Citrus Sinensis ID: 029640

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGELGG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHcccccEEEEccccccccccccEEEEcccccccccHHcccHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHcccEEEEEccccHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHcccccEEEEEccccccEEEEEHEEEEcccccccccccccccEEEHHHHHHHHHHHHHHHHcccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maqeisngnhnsaskppptpsplrfskFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDnyftgskdnlrkwighprfelirhdvtepllieVDQIyhlacpaspifykynpvktiKTNVIGTLNMLGLAKRVGARILLTstsevygdplvhpqdesywgnvnpigMFSFVLKDGIMKLIGELGG
Flexible Loop (DISEMBL)
maqeisngnhnsaskppptpSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDnyftgskdnlrkWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGELGG
Low Complexity Region (SEG)
MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGELGG
Disordered region (IsUnstruct)
************************FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIG****
Disordered Region (DISOPRED)
*****************************QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGELGG
Disordered Region (DISEMBL)
*******************PSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGELGG
Disordered Region (DISPRO)
*******************PSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGELGG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGELGG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
Q6DF08	421	UDP-glucuronic acid decar	yes	no	0.857	0.387	0.647	3e-57
Q6GMI9	418	UDP-glucuronic acid decar	yes	no	0.721	0.327	0.760	7e-57
Q8NBZ7	420	UDP-glucuronic acid decar	yes	no	0.721	0.326	0.760	1e-56
Q5R885	420	UDP-glucuronic acid decar	yes	no	0.721	0.326	0.760	1e-56
Q91XL3	420	UDP-glucuronic acid decar	yes	no	0.721	0.326	0.760	1e-56
Q5PQX0	420	UDP-glucuronic acid decar	yes	no	0.721	0.326	0.760	1e-56
Q57664	305	Putative UDP-glucose 4-ep	yes	no	0.731	0.455	0.360	2e-15
Q6D2F1	673	Bifunctional polymyxin re	yes	no	0.647	0.182	0.308	5e-12
C6DAW5	672	Bifunctional polymyxin re	yes	no	0.647	0.183	0.308	5e-12
A0R5C5	313	UDP-glucose 4-epimerase O	no	no	0.731	0.444	0.333	7e-12

>sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1

 Score =  221 bits (562), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 112/173 (64%), Positives = 127/173 (73%), Gaps = 10/173 (5%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFF--QSNMRILVTGGAGFIGSHLVDKLMENEKN 58
           + ++I N   +   K PP        KF   +   RIL+TGGAGF+GSHL DKLM  + +
Sbjct: 63  LREKIQNLERSFTQKYPPV-------KFLSEKDRKRILITGGAGFVGSHLTDKLM-MDGH 114

Query: 59  EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 118
           EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+
Sbjct: 115 EVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPI 174

Query: 119 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
           KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct: 175 KTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEEYWGHVNPIG 227

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis.
Xenopus tropicalis (taxid: 8364)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5

>sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2

 Score =  219 bits (559), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 116/138 (84%), Gaps = 1/138 (0%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 88  RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 146

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 147 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 206

Query: 154 PLVHPQDESYWGNVNPIG 171
           P VHPQ+E YWG+VNPIG
Sbjct: 207 PEVHPQNEDYWGHVNPIG 224

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis (By similarity). Essential during embryogenesis for craniofacial development.

Danio rerio (taxid: 7955)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1

 Score =  219 bits (557), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 115/138 (83%), Gaps = 1/138 (0%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 90  RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208

Query: 154 PLVHPQDESYWGNVNPIG 171
           P VHPQ E YWG+VNPIG
Sbjct: 209 PEVHPQSEDYWGHVNPIG 226

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1

 Score =  219 bits (557), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 115/138 (83%), Gaps = 1/138 (0%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 90  RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208

Query: 154 PLVHPQDESYWGNVNPIG 171
           P VHPQ E YWG+VNPIG
Sbjct: 209 PEVHPQSEDYWGHVNPIG 226

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis.

Pongo abelii (taxid: 9601)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1

 Score =  219 bits (557), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 115/138 (83%), Gaps = 1/138 (0%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 90  RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208

Query: 154 PLVHPQDESYWGNVNPIG 171
           P VHPQ E YWG+VNPIG
Sbjct: 209 PEVHPQSEDYWGHVNPIG 226

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1

 Score =  218 bits (556), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 115/138 (83%), Gaps = 1/138 (0%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 90  RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208

Query: 154 PLVHPQDESYWGNVNPIG 171
           P VHPQ E YWG+VNPIG
Sbjct: 209 PEVHPQSEDYWGHVNPIG 226

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0211 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 22/161 (13%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           ILVTGGAGFIGSH+VDKL+EN   +VI++DN  TG+K+N+     +P+ E +  D+ +  
Sbjct: 2   ILVTGGAGFIGSHIVDKLIENNY-DVIILDNLTTGNKNNI-----NPKAEFVNADIRDKD 55

Query: 95  LIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILLTS 146
           L E      V+ + H A   +      NPV     NV+GT+N+L + ++  +   +  +S
Sbjct: 56  LDEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASS 115

Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGE 187
              VYG+P   P DE++   +NP+  +      G+ K +GE
Sbjct: 116 GGAVYGEPNYLPVDENH--PINPLSPY------GLSKYVGE 148

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|Q6D2F1|ARNA_ERWCT Bifunctional polymyxin resistance protein ArnA OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=arnA PE=3 SV=1

 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 10/133 (7%)

Query: 26  SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
           S+  +   R+L+ G  GFIG+HL ++L+ +++ E+  +D     S D + +++G PRF  
Sbjct: 316 SRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHF 371

Query: 86  IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
           +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    R  
Sbjct: 372 VEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYN 431

Query: 140 ARILLTSTSEVYG 152
            RI+  STSEVYG
Sbjct: 432 KRIVFPSTSEVYG 444

Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides.

Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: 5

>sp|C6DAW5|ARNA_PECCP Bifunctional polymyxin resistance protein ArnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1

 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 10/133 (7%)

Query: 26  SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
           S+  +   R+L+ G  GFIG+HL ++L+ +++ E+  +D     S D + +++G PRF  
Sbjct: 315 SRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHF 370

Query: 86  IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
           +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    R  
Sbjct: 371 VEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYN 430

Query: 140 ARILLTSTSEVYG 152
            RI+  STSEVYG
Sbjct: 431 KRIVFPSTSEVYG 443

Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides.

Pectobacterium carotovorum subsp. carotovorum (strain PC1) (taxid: 561230)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: 5

>sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 11/150 (7%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MR LVTG AGFIGS LVD+L+ +  + V+ +D+  +G  +NL       +FE ++ D+ +
Sbjct: 1   MRTLVTGAAGFIGSTLVDRLLAD-GHGVVGLDDLSSGRAENLHSAENSDKFEFVKADIVD 59

Query: 93  P----LLIEV--DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
                LL E   + I+HLA   S      +P      NV+GT+ +   A+  G R ++ +
Sbjct: 60  ADLTGLLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAARLAGVRKVVHT 119

Query: 147 TS--EVYGDPLVHPQDESYWGNVNPIGMFS 174
           +S   VYG P  +P  E     VNP   ++
Sbjct: 120 SSGGSVYGTPPAYPTSEDM--PVNPASPYA 147

Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) (taxid: 246196)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
255575062	346	dtdp-glucose 4-6-dehydratase, putative [	0.915	0.502	0.954	3e-94
224100953	346	predicted protein [Populus trichocarpa]	0.915	0.502	0.936	4e-93
225449563	345	PREDICTED: UDP-glucuronic acid decarboxy	0.915	0.504	0.936	1e-92
224109544	346	predicted protein [Populus trichocarpa]	0.915	0.502	0.913	1e-91
192338748	346	UDP-D-glucuronate carboxy-lyase [Eucalyp	0.915	0.502	0.902	1e-89
356550259	348	PREDICTED: UDP-glucuronic acid decarboxy	0.915	0.5	0.903	7e-88
358248590	348	uncharacterized protein LOC100790835 [Gl	0.915	0.5	0.903	7e-88
449459910	344	PREDICTED: UDP-glucuronic acid decarboxy	0.915	0.505	0.885	2e-87
388495536	346	unknown [Lotus japonicus]	0.915	0.502	0.885	2e-87
60932273	343	UDP-glucuronic acid decarboxylase 3 [Pop	0.889	0.492	0.917	9e-87

>gi|255575062|ref|XP_002528436.1| dtdp-glucose 4-6-dehydratase, putative [Ricinus communis] gi|223532112|gb|EEF33919.1| dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]

 Score =  349 bits (895), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 166/174 (95%), Positives = 173/174 (99%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA+E+SNG+H+SASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV
Sbjct: 1   MAKEVSNGDHSSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IVVDNYFTGSKDNL+KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVVDNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ+ESYWGNVNPIG+ S
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQEESYWGNVNPIGVRS 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100953|ref|XP_002312082.1| predicted protein [Populus trichocarpa] gi|118487220|gb|ABK95438.1| unknown [Populus trichocarpa] gi|222851902|gb|EEE89449.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (886), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 163/174 (93%), Positives = 170/174 (97%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA+E SNGNHNSA+K PPTPSPLRFSK+FQSNMRILVTGGAGFIGSHLVD+LMENEKNEV
Sbjct: 1   MAKEASNGNHNSATKAPPTPSPLRFSKYFQSNMRILVTGGAGFIGSHLVDRLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG+ S
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449563|ref|XP_002283871.1| PREDICTED: UDP-glucuronic acid decarboxylase 1 [Vitis vinifera] gi|147766093|emb|CAN65700.1| hypothetical protein VITISV_010481 [Vitis vinifera] gi|296086255|emb|CBI31696.3| unnamed protein product [Vitis vinifera]

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 163/174 (93%), Positives = 170/174 (97%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA+E+SNG+HNS +KPPPTPSPLR SKFFQSNMRILVTGGAGFIGSHLVDKLM+NEKNEV
Sbjct: 1   MAKEVSNGDHNSVTKPPPTPSPLRNSKFFQSNMRILVTGGAGFIGSHLVDKLMQNEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ+ESYWGNVNPIG+ S
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQEESYWGNVNPIGVRS 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109544|ref|XP_002315231.1| predicted protein [Populus trichocarpa] gi|118483816|gb|ABK93800.1| unknown [Populus trichocarpa] gi|118485318|gb|ABK94518.1| unknown [Populus trichocarpa] gi|222864271|gb|EEF01402.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (873), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 159/174 (91%), Positives = 170/174 (97%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           M++E SNG+HNSA+K PPTPSPLRFSKFFQSNMRIL+TGGAGFIGSHLVD+LMENEKNEV
Sbjct: 1   MSKEASNGDHNSAAKAPPTPSPLRFSKFFQSNMRILITGGAGFIGSHLVDRLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQ+ESYWGNVNPIG+ S
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQNESYWGNVNPIGVRS 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192338748|gb|ACF04279.1| UDP-D-glucuronate carboxy-lyase [Eucalyptus grandis]

 Score =  333 bits (855), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 157/174 (90%), Positives = 168/174 (96%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA++ SNG ++S +KPPPTPSPLRFSKFFQ NMRILVTGGAGFIGSHLVDKLMENEKNEV
Sbjct: 1   MAKQASNGENHSVAKPPPTPSPLRFSKFFQPNMRILVTGGAGFIGSHLVDKLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DN+FTG+K+NL+KWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNFFTGTKENLKKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG+ S
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS 174

Source: Eucalyptus grandis

Species: Eucalyptus grandis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550259|ref|XP_003543505.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Glycine max]

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 159/176 (90%), Positives = 165/176 (93%), Gaps = 2/176 (1%)

Query: 1   MAQEISNGN--HNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKN 58
           MA + SNGN  H + +K PP PSPLRFSKFFQSNMRILVTGGAGFIGSHLVD+LMENEKN
Sbjct: 1   MATDSSNGNGHHQTTTKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKN 60

Query: 59  EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 118
           EVIV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV
Sbjct: 61  EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 120

Query: 119 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ ESYWGNVNPIG+ S
Sbjct: 121 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRS 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248590|ref|NP_001239907.1| uncharacterized protein LOC100790835 [Glycine max] gi|255641885|gb|ACU21211.1| unknown [Glycine max]

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 159/176 (90%), Positives = 165/176 (93%), Gaps = 2/176 (1%)

Query: 1   MAQEISNGN--HNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKN 58
           MA + SNGN  H + +K PP PSPLRFSKFFQSNMRILVTGGAGFIGSHLVD+LMENEKN
Sbjct: 1   MATDSSNGNGHHQTTTKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKN 60

Query: 59  EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 118
           EVIV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV
Sbjct: 61  EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 120

Query: 119 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ ESYWGNVNPIG+ S
Sbjct: 121 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRS 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459910|ref|XP_004147689.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Cucumis sativus] gi|449523904|ref|XP_004168963.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Cucumis sativus]

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 154/174 (88%), Positives = 165/174 (94%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA++ SNG+  +++K PP PSPLR +KFFQ+NMRILVTGGAGFIGSHLVD+LMENEKNEV
Sbjct: 1   MAKQSSNGDFYTSTKAPPPPSPLRSAKFFQANMRILVTGGAGFIGSHLVDRLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
            KTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG+ S
Sbjct: 121 TKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS 174

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495536|gb|AFK35834.1| unknown [Lotus japonicus]

 Score =  326 bits (836), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 154/174 (88%), Positives = 163/174 (93%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA + SNG+H  A K PP PSPLRFSKFFQ+NMRILVTGGAGFIGSHLVD+LMENEKNEV
Sbjct: 1   MATDSSNGDHQKAGKQPPLPSPLRFSKFFQANMRILVTGGAGFIGSHLVDRLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DN+FTGSKDNL+KWIGHPRFELIRHDVTE LL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNFFTGSKDNLKKWIGHPRFELIRHDVTEQLLVEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQ ESYWGNVNPIG+ S
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPESYWGNVNPIGVRS 174

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60932273|gb|AAX37336.1| UDP-glucuronic acid decarboxylase 3 [Populus tomentosa]

 Score =  324 bits (831), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 155/169 (91%), Positives = 160/169 (94%)

Query: 6   SNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65
           SNG+H +  KPPP+PSPLR SKF QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIV DN
Sbjct: 3   SNGDHQTTVKPPPSPSPLRNSKFSQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62

Query: 66  YFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNV 125
           YFTGSKDNLRKWIG PRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKTIKTNV
Sbjct: 63  YFTGSKDNLRKWIGQPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKTIKTNV 122

Query: 126 IGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           IGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ ESYWGNVNPIG+ S
Sbjct: 123 IGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRS 171

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2053275	343	UXS6 "UDP-XYL synthase 6" [Ara	0.905	0.501	0.890	3.2e-81
TAIR|locus:2078206	341	UXS5 "UDP-XYL synthase 5" [Ara	0.894	0.498	0.876	9.7e-80
TAIR|locus:2168539	357	UXS3 "UDP-glucuronic acid deca	0.857	0.456	0.889	4.8e-78
TAIR|locus:2081675	445	AUD1 "AT3G62830" [Arabidopsis	0.757	0.323	0.731	8.6e-56
FB|FBgn0035848	441	CG7979 [Drosophila melanogaste	0.8	0.344	0.636	3.7e-54
UNIPROTKB|E1BV28	421	UXS1 "Uncharacterized protein"	0.778	0.351	0.713	4.3e-54
ZFIN|ZDB-GENE-020419-37	418	uxs1 "UDP-glucuronic acid deca	0.778	0.354	0.713	4.3e-54
UNIPROTKB|E1BMI4	420	UXS1 "Uncharacterized protein"	0.778	0.352	0.72	5.5e-54
UNIPROTKB|F1PU61	414	UXS1 "Uncharacterized protein"	0.778	0.357	0.713	5.5e-54
UNIPROTKB|B3KV61	363	UXS1 "UDP-glucuronate decarbox	0.778	0.407	0.713	5.5e-54

TAIR|locus:2053275 UXS6 "UDP-XYL synthase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 155/174 (89%), Positives = 161/174 (92%)

Query:     1 MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
             MA   SNG   + +KPPP PSPLR SKFFQSNMRILVTGGAGFIGSHLVDKLM+NEKNEV
Sbjct:     1 MASNSSNGT--TTTKPPPMPSPLRNSKFFQSNMRILVTGGAGFIGSHLVDKLMQNEKNEV 58

Query:    61 IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
             IV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPL +EVDQIYHLACPASPIFYKYNPVKT
Sbjct:    59 IVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLFVEVDQIYHLACPASPIFYKYNPVKT 118

Query:   121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
             IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ ESYWGNVNPIG+ S
Sbjct:   119 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQTESYWGNVNPIGVRS 172

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2078206 UXS5 "UDP-XYL synthase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 149/170 (87%), Positives = 161/170 (94%)

Query:     5 ISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD 64
             +++ +  ++ KPPP+PSPLR SKF QSNMRIL++GGAGFIGSHLVDKLMENEKNEVIV D
Sbjct:     1 MASSDKQTSPKPPPSPSPLRNSKFCQSNMRILISGGAGFIGSHLVDKLMENEKNEVIVAD 60

Query:    65 NYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN 124
             NYFTGSKDNL+KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN
Sbjct:    61 NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN 120

Query:   125 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
             VIGTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQ ESYWGNVNPIG+ S
Sbjct:   121 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPESYWGNVNPIGVRS 170

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0042732 "D-xylose metabolic process" evidence=RCA;TAS

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2168539 UXS3 "UDP-glucuronic acid decarboxylase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 145/163 (88%), Positives = 156/163 (95%)

Query:    12 SASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK 71
             + +KPPP+PSPLR SKF Q NMRIL++GGAGFIGSHLVDKLMENEKNEV+V DNYFTGSK
Sbjct:    24 NTTKPPPSPSPLRNSKFCQPNMRILISGGAGFIGSHLVDKLMENEKNEVVVADNYFTGSK 83

Query:    72 DNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM 131
             +NL+KWIGHPRFELIRHDVTEPLLIEVD+IYHLACPASPIFYKYNPVKTIKTNVIGTLNM
Sbjct:    84 ENLKKWIGHPRFELIRHDVTEPLLIEVDRIYHLACPASPIFYKYNPVKTIKTNVIGTLNM 143

Query:   132 LGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
             LGLAKRVGARILLTSTSEVYGDPL+HPQ ESYWGNVNPIG+ S
Sbjct:   144 LGLAKRVGARILLTSTSEVYGDPLIHPQPESYWGNVNPIGVRS 186

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042732 "D-xylose metabolic process" evidence=RCA;IDA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IDA

TAIR|locus:2081675 AUD1 "AT3G62830" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 106/145 (73%), Positives = 125/145 (86%)

Query:    30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
             +  +R++VTGGAGF+GSHLVD+LM    + VIVVDN+FTG K+N+     +P FE+IRHD
Sbjct:   116 RKGLRVVVTGGAGFVGSHLVDRLMARG-DTVIVVDNFFTGRKENVMHHFSNPNFEMIRHD 174

Query:    90 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149
             V EP+L+EVDQIYHLACPASP+ YK+NPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSE
Sbjct:   175 VVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 234

Query:   150 VYGDPLVHPQDESYWGNVNPIGMFS 174
             VYGDPL HPQ E+YWGNVNPIG+ S
Sbjct:   235 VYGDPLQHPQVETYWGNVNPIGVRS 259

GO:0003824 "catalytic activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS

GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=ISS

GO:0019305 "dTDP-rhamnose biosynthetic process" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0042732 "D-xylose metabolic process" evidence=IDA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

FB|FBgn0035848 CG7979 [Drosophila melanogaster (taxid:7227)]

 Score = 540 (195.1 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
 Identities = 100/157 (63%), Positives = 124/157 (78%)

Query:    19 TPSPLRFSKF----FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL 74
             T +P ++ K     +++  RIL+TGGAGF+GSHLVD LM  + +EVIVVDN+FTG K N+
Sbjct:    98 TSTPRKYPKVKYLNYKNRKRILITGGAGFVGSHLVDDLMV-QGHEVIVVDNFFTGRKRNV 156

Query:    75 RKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
               W+GH  FELI HD+  PL IE+D+IYHLA PASP  Y YNPVKTIKTN +GT+N+LGL
Sbjct:   157 EHWLGHENFELIHHDIVNPLFIEIDEIYHLASPASPPHYMYNPVKTIKTNTMGTINVLGL 216

Query:   135 AKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
             AKRV A++L+ STSEVYGDP VHPQ E+YWG+VNPIG
Sbjct:   217 AKRVMAKVLIASTSEVYGDPTVHPQPETYWGHVNPIG 253

GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

UNIPROTKB|E1BV28 UXS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 107/150 (71%), Positives = 121/150 (80%)

Query:    22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
             P++F    +   RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH 
Sbjct:    80 PVKFLSE-KDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 137

Query:    82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
              FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct:   138 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 197

Query:   142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
             +LL STSEVYGDP VHPQ+E YWG+VNPIG
Sbjct:   198 LLLASTSEVYGDPEVHPQNEDYWGHVNPIG 227

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-020419-37 uxs1 "UDP-glucuronic acid decarboxylase 1" [Danio rerio (taxid:7955)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 107/150 (71%), Positives = 121/150 (80%)

Query:    22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
             P++F    +   RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH 
Sbjct:    77 PVKFLSE-KDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 134

Query:    82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
              FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct:   135 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 194

Query:   142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
             +LL STSEVYGDP VHPQ+E YWG+VNPIG
Sbjct:   195 LLLASTSEVYGDPEVHPQNEDYWGHVNPIG 224

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0051216 "cartilage development" evidence=IMP

GO:0001503 "ossification" evidence=IMP

GO:0030166 "proteoglycan biosynthetic process" evidence=IMP

GO:0030206 "chondroitin sulfate biosynthetic process" evidence=IMP

GO:0015012 "heparan sulfate proteoglycan biosynthetic process" evidence=IGI;IMP

GO:0030198 "extracellular matrix organization" evidence=IGI;IMP

GO:0050650 "chondroitin sulfate proteoglycan biosynthetic process" evidence=IGI;IMP

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

UNIPROTKB|E1BMI4 UXS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 108/150 (72%), Positives = 120/150 (80%)

Query:    22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
             P++F    +   RILVTGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH 
Sbjct:    79 PVKFLSE-KDRKRILVTGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 136

Query:    82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
              FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct:   137 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 196

Query:   142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
             +LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct:   197 LLLASTSEVYGDPEVHPQTEDYWGHVNPIG 226

GO:0050662 "coenzyme binding" evidence=IEA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1PU61 UXS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 107/150 (71%), Positives = 120/150 (80%)

Query:    22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
             P++F    +   RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH 
Sbjct:    73 PVKFLSE-KDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 130

Query:    82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
              FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct:   131 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 190

Query:   142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
             +LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct:   191 LLLASTSEVYGDPEVHPQSEDYWGHVNPIG 220

GO:0005739 "mitochondrion" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|B3KV61 UXS1 "UDP-glucuronate decarboxylase 1, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 107/150 (71%), Positives = 120/150 (80%)

Query:    22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
             P++F    +   RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH 
Sbjct:    22 PVKFLSE-KDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 79

Query:    82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
              FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct:    80 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 139

Query:   142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
             +LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct:   140 LLLASTSEVYGDPEVHPQSEDYWGHVNPIG 169

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R885	UXS1_PONAB	4, ., 1, ., 1, ., 3, 5	0.7608	0.7210	0.3261	yes	no
Q8NBZ7	UXS1_HUMAN	4, ., 1, ., 1, ., 3, 5	0.7608	0.7210	0.3261	yes	no
Q6GMI9	UXS1_DANRE	4, ., 1, ., 1, ., 3, 5	0.7608	0.7210	0.3277	yes	no
Q5PQX0	UXS1_RAT	4, ., 1, ., 1, ., 3, 5	0.7608	0.7210	0.3261	yes	no
Q91XL3	UXS1_MOUSE	4, ., 1, ., 1, ., 3, 5	0.7608	0.7210	0.3261	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
cd05230	305	cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase	6e-99
PLN02206	442	PLN02206, PLN02206, UDP-glucuronate decarboxylase	1e-81
PLN02166	436	PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase	1e-80
cd05256	304	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e	1e-35
cd05234	305	cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase,	2e-34
cd05257	316	cd05257, Arna_like_SDR_e, Arna decarboxylase_like,	9e-33
COG0451	314	COG0451, WcaG, Nucleoside-diphosphate-sugar epimer	6e-32
cd08946	200	cd08946, SDR_e, extended (e) SDRs	2e-26
cd05246	315	cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra	2e-25
cd05258	337	cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e	1e-23
pfam01370	233	pfam01370, Epimerase, NAD dependent epimerase/dehy	2e-22
COG1088	340	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel	2e-21
TIGR04180	297	TIGR04180, EDH_00030, NAD dependent epimerase/dehy	2e-19
cd05247	323	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase,	3e-19
COG1087	329	COG1087, GalE, UDP-glucose 4-epimerase [Cell envel	5e-19
cd05260	316	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase	1e-18
TIGR01179	328	TIGR01179, galE, UDP-glucose-4-epimerase GalE	3e-18
TIGR01181	317	TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd	3e-17
cd05248	317	cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto	1e-15
cd05253	332	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera	1e-15
cd08957	307	cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic	4e-15
cd05264	300	cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase	1e-14
cd05273	328	cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-	3e-14
cd05228	318	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr	3e-13
cd05237	287	cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l	3e-13
PLN02427	386	PLN02427, PLN02427, UDP-apiose/xylose synthase	4e-13
COG1086	588	COG1086, COG1086, Predicted nucleoside-diphosphate	5e-13
PRK10084	352	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase;	1e-12
PRK11908	347	PRK11908, PRK11908, NAD-dependent epimerase/dehydr	1e-12
TIGR02197	314	TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep	2e-12
cd05241	331	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d	3e-12
cd05263	293	cd05263, MupV_like_SDR_e, Pseudomonas fluorescens	3e-11
pfam02719	280	pfam02719, Polysacc_synt_2, Polysaccharide biosynt	4e-11
PRK08125	660	PRK08125, PRK08125, bifunctional UDP-glucuronic ac	5e-11
PRK10217	355	PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase;	5e-11
pfam07993	245	pfam07993, NAD_binding_4, Male sterility protein	9e-11
PRK07201	657	PRK07201, PRK07201, short chain dehydrogenase; Pro	1e-10
COG1089	345	COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve	6e-10
pfam01073	280	pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr	1e-09
PRK10675	338	PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro	2e-09
cd05238	305	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n	3e-09
cd05227	301	cd05227, AR_SDR_e, aldehyde reductase, extended (e	5e-09
cd05252	336	cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata	6e-09
cd05240	306	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase	7e-09
cd09813	335	cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD	2e-08
cd09811	354	cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD	2e-08
PLN02240	352	PLN02240, PLN02240, UDP-glucose 4-epimerase	4e-08
PLN02260	668	PLN02260, PLN02260, probable rhamnose biosynthetic	6e-08
cd08958	293	cd08958, FR_SDR_e, flavonoid reductase (FR), exten	7e-08
PRK15181	348	PRK15181, PRK15181, Vi polysaccharide biosynthesis	8e-08
cd05193	295	cd05193, AR_like_SDR_e, aldehyde reductase, flavon	8e-08
cd05232	303	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase,	1e-07
COG1091	281	COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C	2e-07
TIGR03589	324	TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd	4e-07
cd05272	308	cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext	4e-07
TIGR03466	328	TIGR03466, HpnA, hopanoid-associated sugar epimera	6e-07
cd05239	300	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte	9e-07
PRK11150	308	PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epi	1e-06
TIGR01214	287	TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase	1e-06
TIGR04130	337	TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehyd	2e-06
TIGR02622	349	TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra	4e-06
cd05235	290	cd05235, SDR_e1, extended (e) SDRs, subgroup 1	5e-06
cd05226	176	cd05226, SDR_e_a, Extended (e) and atypical (a) SD	1e-05
cd05236	320	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F	1e-05
COG3320	382	COG3320, COG3320, Putative dehydrogenase domain of	1e-05
COG0702	275	COG0702, COG0702, Predicted nucleoside-diphosphate	2e-05
cd05254	280	cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4	4e-05
cd02266	186	cd02266, SDR, Short-chain dehydrogenases/reductase	6e-05
TIGR01472	343	TIGR01472, gmd, GDP-mannose 4,6-dehydratase	1e-04
cd05255	382	cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth	1e-04
cd05245	293	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	1e-04
cd05229	302	cd05229, SDR_a3, atypical (a) SDRs, subgroup 3	0.001
cd05262	291	cd05262, SDR_a7, atypical (a) SDRs, subgroup 7	0.001
PLN02695	370	PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase	0.001
cd05261	248	cd05261, CAPF_like_SDR_e, capsular polysaccharide	0.002
pfam04321	284	pfam04321, RmlD_sub_bind, RmlD substrate binding d	0.004

>gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

 Score =  287 bits (738), Expect = 6e-99
 Identities = 107/142 (75%), Positives = 122/142 (85%), Gaps = 1/142 (0%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
            RIL+TGGAGF+GSHL D+L+  + +EVI VDN+FTG K N+   IGHP FE IRHDVTE
Sbjct: 1   KRILITGGAGFLGSHLCDRLL-EDGHEVICVDNFFTGRKRNIEHLIGHPNFEFIRHDVTE 59

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
           PL +EVDQIYHLACPASP+ Y+YNP+KT+KTNV+GTLNMLGLAKRVGAR+LL STSEVYG
Sbjct: 60  PLYLEVDQIYHLACPASPVHYQYNPIKTLKTNVLGTLNMLGLAKRVGARVLLASTSEVYG 119

Query: 153 DPLVHPQDESYWGNVNPIGMFS 174
           DP VHPQ ESYWGNVNPIG  S
Sbjct: 120 DPEVHPQPESYWGNVNPIGPRS 141

UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase

 Score =  248 bits (635), Expect = 1e-81
 Identities = 107/142 (75%), Positives = 124/142 (87%), Gaps = 1/142 (0%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           +R++VTGGAGF+GSHLVD+LM    + VIVVDN+FTG K+N+     +P FELIRHDV E
Sbjct: 120 LRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDNFFTGRKENVMHHFSNPNFELIRHDVVE 178

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
           P+L+EVDQIYHLACPASP+ YK+NPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSEVYG
Sbjct: 179 PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 238

Query: 153 DPLVHPQDESYWGNVNPIGMFS 174
           DPL HPQ E+YWGNVNPIG+ S
Sbjct: 239 DPLQHPQVETYWGNVNPIGVRS 260

Length = 442

>gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase

 Score =  245 bits (627), Expect = 1e-80
 Identities = 112/145 (77%), Positives = 127/145 (87%), Gaps = 1/145 (0%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +  +RI+VTGGAGF+GSHLVDKL+    +EVIV+DN+FTG K+NL    G+PRFELIRHD
Sbjct: 118 RKRLRIVVTGGAGFVGSHLVDKLI-GRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHD 176

Query: 90  VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149
           V EP+L+EVDQIYHLACPASP+ YKYNPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSE
Sbjct: 177 VVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSE 236

Query: 150 VYGDPLVHPQDESYWGNVNPIGMFS 174
           VYGDPL HPQ E+YWGNVNPIG  S
Sbjct: 237 VYGDPLEHPQKETYWGNVNPIGERS 261

Length = 436

>gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs

 Score =  126 bits (318), Expect = 1e-35
 Identities = 67/163 (41%), Positives = 94/163 (57%), Gaps = 21/163 (12%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
           R+LVTGGAGFIGSHLV++L+E   +EVIV+DN  TG K+NL +    P  + I  D+   
Sbjct: 1   RVLVTGGAGFIGSHLVERLLERG-HEVIVLDNLSTGKKENLPE--VKPNVKFIEGDIRDD 57

Query: 92  ---EPLLIEVDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
              E     VD ++H A  AS P   + +P+K  + NV+GTLN+L  A++ G  R +  S
Sbjct: 58  ELVEFAFEGVDYVFHQAAQASVPRSIE-DPIKDHEVNVLGTLNLLEAARKAGVKRFVYAS 116

Query: 147 TSEVYGDPLVHPQDESYWGN-VNPIGMFSFVLKDGIMKLIGEL 188
           +S VYGDP   P+DE +  N ++P           + K  GEL
Sbjct: 117 SSSVYGDPPYLPKDEDHPPNPLSPY---------AVSKYAGEL 150

This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304

>gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs

 Score =  122 bits (309), Expect = 2e-34
 Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 6/135 (4%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RILVTGGAGFIGSHLVD+L+E E NEV+VVDN  +G ++N+     +  F  ++ D+ + 
Sbjct: 1   RILVTGGAGFIGSHLVDRLLE-EGNEVVVVDNLSSGRRENIEPEFENKAFRFVKRDLLDT 59

Query: 94  L----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
                  + D ++HLA          +P   ++ NV+ T N+L   +  G  RI+  S+S
Sbjct: 60  ADKVAKKDGDTVFHLAANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVKRIVFASSS 119

Query: 149 EVYGDPLVHPQDESY 163
            VYG+  V P  E Y
Sbjct: 120 TVYGEAKVIPTPEDY 134

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs

 Score =  118 bits (299), Expect = 9e-33
 Identities = 51/135 (37%), Positives = 72/135 (53%), Gaps = 7/135 (5%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
            +LVTG  GFIGSHL ++L+  E +EV  +D Y + +   L     H RF  I  DV + 
Sbjct: 1   NVLVTGADGFIGSHLTERLLR-EGHEVRALDIYNSFNSWGLLDNAVHDRFHFISGDVRDA 59

Query: 94  LLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTST 147
             +E      D ++HLA   +  +    P+  ++TNV GTLN+L  A  +   R++ TST
Sbjct: 60  SEVEYLVKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKRVVHTST 119

Query: 148 SEVYGDPLVHPQDES 162
           SEVYG     P DE 
Sbjct: 120 SEVYGTAQDVPIDED 134

Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316

>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score =  116 bits (292), Expect = 6e-32
 Identities = 57/160 (35%), Positives = 79/160 (49%), Gaps = 13/160 (8%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MRILVTGGAGFIGSHLV++L+    ++V  +D    G        +     +L   D+ +
Sbjct: 1   MRILVTGGAGFIGSHLVERLLA-AGHDVRGLDRLRDGLDPL-LSGVEFVVLDLTDRDLVD 58

Query: 93  PLLIEV-DQIYHLACPASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVG-ARILLTST-S 148
            L   V D + HLA  +S       +P + +  NV GTLN+L  A+  G  R +  S+ S
Sbjct: 59  ELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVS 118

Query: 149 EVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
            VYGDP   P DE   G   P+  +      G+ KL  E 
Sbjct: 119 VVYGDPPPLPIDEDL-GPPRPLNPY------GVSKLAAEQ 151

Length = 314

>gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs

 Score = 99.7 bits (249), Expect = 2e-26
 Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 34/133 (25%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           ILVTGGAGFIGSHLV +L     +EV+V+D                              
Sbjct: 1   ILVTGGAGFIGSHLVRRL-LERGHEVVVIDRL---------------------------- 31

Query: 95  LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD 153
               D + HLA          NP +  +TNV+GTLN+L  A++ G  R +  S++ VYG 
Sbjct: 32  ----DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRFVYASSASVYGS 87

Query: 154 PLVHPQDESYWGN 166
           P   P++E     
Sbjct: 88  PEGLPEEEETPPR 100

Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200

>gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

 Score = 99.2 bits (248), Expect = 2e-25
 Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 18/135 (13%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDV 90
           M+ILVTGGAGFIGS+ V  L+    + ++I +D   + G+ +NL      PR+  ++ D+
Sbjct: 1   MKILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYAGNLENLEDVSSSPRYRFVKGDI 60

Query: 91  TEPLLI-------EVDQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
            +  L+       ++D + H A       S I    +P   I+TNV+GT  +L  A++ G
Sbjct: 61  CDAELVDRLFEEEKIDAVIHFAAESHVDRS-I---SDPEPFIRTNVLGTYTLLEAARKYG 116

Query: 140 A-RILLTSTSEVYGD 153
             R +  ST EVYGD
Sbjct: 117 VKRFVHISTDEVYGD 131

This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315

>gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs

 Score = 95.4 bits (238), Expect = 1e-23
 Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 14/133 (10%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN----YFTGSKDNLRKWIGHPRFELIRH 88
           MR+L+TGGAGFIGS+L    ++    EVI  DN       G+   L+          +  
Sbjct: 1   MRVLITGGAGFIGSNLARFFLKQG-WEVIGFDNLMRRGSFGNLAWLKANREDGGVRFVHG 59

Query: 89  DV-----TEPLLIEVDQIYHLAC-PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A 140
           D+      E L  ++D I H A  P+       +P    +TN +GTLN+L  A++    A
Sbjct: 60  DIRNRNDLEDLFEDIDLIIHTAAQPSVTTSAS-SPRLDFETNALGTLNVLEAARQHAPNA 118

Query: 141 RILLTSTSEVYGD 153
             + TST++VYGD
Sbjct: 119 PFIFTSTNKVYGD 131

CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337

>gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family

 Score = 90.0 bits (224), Expect = 2e-22
 Identities = 48/141 (34%), Positives = 64/141 (45%), Gaps = 23/141 (16%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           ILVTGG GFIGSHLV +L++        V       +      +   R      D+T+P 
Sbjct: 1   ILVTGGTGFIGSHLVRRLLQEG----YEVIVLGRRRRSES---LNTGRIRFHEGDLTDPD 53

Query: 95  LIE-------VDQIYHLA----CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RI 142
            +E        D + HLA      AS      +P   I+ NV+GTL +L  A+R G  R 
Sbjct: 54  ALERLLAEVQPDAVIHLAAQSGVGAS----FEDPADFIRANVLGTLRLLEAARRAGVKRF 109

Query: 143 LLTSTSEVYGDPLVHPQDESY 163
           +  S+SEVYGD    P  E  
Sbjct: 110 VFASSSEVYGDVADPPITEDT 130

This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233

>gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

 Score = 88.8 bits (221), Expect = 2e-21
 Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 19/136 (13%)

Query: 33  MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVD--NYFTGSKDNLRKWIGHPRFELIRHD 89
           M+ILVTGGAGFIGS+ V  ++     + V+ +D   Y  G+ +NL      PR+  ++ D
Sbjct: 1   MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTY-AGNLENLADVEDSPRYRFVQGD 59

Query: 90  VTEPLLIE-------VDQIYHLACPAS---PIFYKYNPVKTIKTNVIGTLNMLGLAKR-- 137
           + +  L++        D + H A  +     I     P   I+TNV+GT  +L  A++  
Sbjct: 60  ICDRELVDRLFKEYQPDAVVHFAAESHVDRSI---DGPAPFIQTNVVGTYTLLEAARKYW 116

Query: 138 VGARILLTSTSEVYGD 153
              R    ST EVYGD
Sbjct: 117 GKFRFHHISTDEVYGD 132

Length = 340

>gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family

 Score = 82.7 bits (205), Expect = 2e-19
 Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 12/139 (8%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFT--GSKDNLRKWIGHPRFELIRHDVT 91
           +LVTG  GFIGSHLV+ L+         V+ N F   G  D     +   + E++  D+ 
Sbjct: 1   VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPEV-KDKIEVVTGDIR 59

Query: 92  EPLLIE-----VDQIYHLACPASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVG-ARILL 144
           +P  +       D ++HLA   + I Y Y  P   + TNV GTLN+L  A+ +G  +++ 
Sbjct: 60  DPDSVRKAMKGCDVVFHLAALIA-IPYSYIAPDSYVDTNVTGTLNVLQAARDLGVEKVVH 118

Query: 145 TSTSEVYGDPLVHPQDESY 163
           TSTSEVYG     P DE +
Sbjct: 119 TSTSEVYGTAQYVPIDEKH 137

This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297

>gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs

 Score = 83.0 bits (206), Expect = 3e-19
 Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 22/143 (15%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           ++LVTGGAG+IGSH V +L+E    +V+V+DN   G ++ L   I   R E    D+ + 
Sbjct: 1   KVLVTGGAGYIGSHTVVELLE-AGYDVVVLDNLSNGHREAL-PRIEKIRIEFYEGDIRDR 58

Query: 94  LLIE-------VDQIYHLACPASPIFYKY------NPVKTIKTNVIGTLNMLGLAKRVGA 140
             ++       +D + H A        K        P+K    NV+GTLN+L   +  G 
Sbjct: 59  AALDKVFAEHKIDAVIHFAA------LKAVGESVQKPLKYYDNNVVGTLNLLEAMRAHGV 112

Query: 141 -RILLTSTSEVYGDPLVHPQDES 162
              + +S++ VYG+P   P  E 
Sbjct: 113 KNFVFSSSAAVYGEPETVPITEE 135

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323

>gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

 Score = 82.2 bits (204), Expect = 5e-19
 Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 25/144 (17%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
           M++LVTGGAG+IGSH V +L++   +EV+V+DN   G K  L K       +    D+  
Sbjct: 1   MKVLVTGGAGYIGSHTVRQLLKT-GHEVVVLDNLSNGHKIALLKLQF----KFYEGDLLD 55

Query: 92  EPLLIEV------DQIYHLACPASPIFYKY------NPVKTIKTNVIGTLNMLGLAKRVG 139
             LL  V      D + H A                NP+K    NV+GTLN++    + G
Sbjct: 56  RALLTAVFEENKIDAVVHFAA------SISVGESVQNPLKYYDNNVVGTLNLIEAMLQTG 109

Query: 140 AR-ILLTSTSEVYGDPLVHPQDES 162
            +  + +ST+ VYG+P   P  E+
Sbjct: 110 VKKFIFSSTAAVYGEPTTSPISET 133

Length = 329

>gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs

 Score = 81.1 bits (201), Expect = 1e-18
 Identities = 44/143 (30%), Positives = 61/143 (42%), Gaps = 18/143 (12%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIRH 88
           R L+TG  G  GS+L + L+E    EV  +      S       I H      R  L   
Sbjct: 1   RALITGITGQDGSYLAEFLLEK-GYEVHGIV---RRSSSFNTDRIDHLYINKDRITLHYG 56

Query: 89  DVTEPL-LIEV------DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK--RVG 139
           D+T+   L         D+IYHLA  +       +P  T + N +GTLN+L   +   + 
Sbjct: 57  DLTDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILGLD 116

Query: 140 ARILLTSTSEVYGDPLVHPQDES 162
           AR    S+SE YG     PQ E+
Sbjct: 117 ARFYQASSSEEYGKVQELPQSET 139

GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316

>gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE

 Score = 80.1 bits (198), Expect = 3e-18
 Identities = 51/160 (31%), Positives = 84/160 (52%), Gaps = 16/160 (10%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPR-FELIRHDVTE 92
           +ILVTGGAG+IGSH V +L+E+   EV+++DN   GS++ L            +  D+ +
Sbjct: 1   KILVTGGAGYIGSHTVRQLLESGH-EVVILDNLSNGSREAL-PRGERITPVTFVEGDLRD 58

Query: 93  PLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL 144
             L+       ++D + H A   +       P+K  + NV+GTLN+L   ++ G  + + 
Sbjct: 59  RELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKKFIF 118

Query: 145 TSTSEVYGDPLVHPQDESY-WGNVNPIG----MFSFVLKD 179
           +S++ VYG+P   P  E    G +NP G    M   +L+D
Sbjct: 119 SSSAAVYGEPSSIPISEDSPLGPINPYGRSKLMSEQILRD 158

Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328

>gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase

 Score = 77.4 bits (191), Expect = 3e-17
 Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 13/132 (9%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDV 90
           RILVTGGAGFIGS+ V + + NE    EVIV+D   + G+ +NL     +PR+  ++ D+
Sbjct: 1   RILVTGGAGFIGSNFV-RYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDI 59

Query: 91  TEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGAR 141
            +  L+       + D + H A  +        P   I+TNV+GT  +L   ++     R
Sbjct: 60  GDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFR 119

Query: 142 ILLTSTSEVYGD 153
               ST EVYGD
Sbjct: 120 FHHISTDEVYGD 131

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317

>gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 14/149 (9%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRK-----WIGHPRF-ELIR 87
           I+VTGGAGFIGS+LV  L E    +++VVDN   G K  NL       +I    F + +R
Sbjct: 2   IIVTGGAGFIGSNLVKALNERGITDILVVDNLSNGEKFKNLVGLKIADYIDKDDFKDWVR 61

Query: 88  HDVTEPLLIEVDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
               E   IE   I+H  AC  +      +    +  N   T  +L        R +  S
Sbjct: 62  KG-DENFKIEA--IFHQGACSDTTET---DGKYMMDNNYQYTKELLHYCLEKKIRFIYAS 115

Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGMFSF 175
           ++ VYG+  +   ++    N+ P+ ++ +
Sbjct: 116 SAAVYGNGSLGFAEDIETPNLRPLNVYGY 144

This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317

>gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 14/133 (10%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN---YFTGS--KDNLRKWIGHPRFELIR 87
           M+ILVTG AGFIG H+  +L+E   +EV+ +DN   Y+     +  L        F+ ++
Sbjct: 1   MKILVTGAAGFIGFHVAKRLLE-RGDEVVGIDNLNDYYDVRLKEARLELLGKSGGFKFVK 59

Query: 88  HDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA 140
            D+ +   +       E D + HLA  A   +   NP   + +N++G LN+L L +  G 
Sbjct: 60  GDLEDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYVDSNIVGFLNLLELCRHFGV 119

Query: 141 R-ILLTSTSEVYG 152
           + ++  S+S VYG
Sbjct: 120 KHLVYASSSSVYG 132

This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332

>gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs

 Score = 71.4 bits (175), Expect = 4e-15
 Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 21/133 (15%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M++L+TGGAG IGSHL++ L+E   ++V+V+DN+ TG +++L     HP   ++   + +
Sbjct: 1   MKVLITGGAGQIGSHLIEHLLER-GHQVVVIDNFATGRREHLPD---HPNLTVVEGSIAD 56

Query: 93  PLLIEV-------DQIYHLACPASPIFYKYNP---VKTIKTNVIGTLNMLGLAKRVGA-R 141
             L++        D + H A  A+   YK +P    +   TNV+G  N++  AK+ G  R
Sbjct: 57  KALVDKLFGDFKPDAVVHTA--AA---YK-DPDDWYEDTLTNVVGGANVVQAAKKAGVKR 110

Query: 142 ILLTSTSEVYGDP 154
           ++   T+  YG  
Sbjct: 111 LIYFQTALCYGLK 123

Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307

>gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 46/136 (33%), Positives = 61/136 (44%), Gaps = 14/136 (10%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           R+L+ GG GFIGSHLVD L+E     V V D         L         + I+ D    
Sbjct: 1   RVLIVGGNGFIGSHLVDALLEEGPQ-VRVFDRSI--PPYELPLG----GVDYIKGDYENR 53

Query: 94  LLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL--AKRVGARILLTS 146
             +E     +D + HLA   +P     NP+  I+TNV  T+ +L    A  +G  I  +S
Sbjct: 54  ADLESALVGIDTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKIIFASS 113

Query: 147 TSEVYGDPLVHPQDES 162
              VYG P   P  ES
Sbjct: 114 GGTVYGVPEQLPISES 129

This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs

 Score = 69.4 bits (170), Expect = 3e-14
 Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 3/120 (2%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           R LVTG  GFIGSHL ++L   E + V   D                   +L   +    
Sbjct: 2   RALVTGAGGFIGSHLAERLKA-EGHYVRGADWKSPEHMTQPTDDDEFHLVDLREMENCLK 60

Query: 94  LLIEVDQIYHLACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY 151
               VD ++HLA     + Y + N    +  N +   NML  A+  G  R L  S++ VY
Sbjct: 61  ATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVERFLFASSACVY 120

This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328

>gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 16/127 (12%)

Query: 35  ILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           ILVTG  GF+GS+LV  L+    +   +V      GS   L         E++  D+T+ 
Sbjct: 1   ILVTGATGFLGSNLVRALLAQGYRVRALVRS----GSDAVLLD---GLPVEVVEGDLTDA 53

Query: 94  LLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 147
             +       D+++HLA   S  + K    +  +TNV GT N+L  A   G  R++ TS+
Sbjct: 54  ASLAAAMKGCDRVFHLAAFTSL-WAKDRK-ELYRTNVEGTRNVLDAALEAGVRRVVHTSS 111

Query: 148 SEVYGDP 154
               G P
Sbjct: 112 IAALGGP 118

This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318

>gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 23/134 (17%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS---KDNLRKWIGHPRFELIR 87
               ILVTGGAG IGS LV ++++    ++IV D            LR    H +   I 
Sbjct: 1   KGKTILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLHELVRELRSRFPHDKLRFII 60

Query: 88  HDVTEPLLI-------EVDQIYHLACPASPIFYK------YNPVKTIKTNVIGTLNMLGL 134
            DV +   +         D ++H A        K       NP + IKTNV+GT N++  
Sbjct: 61  GDVRDKERLRRAFKERGPDIVFHAAA------LKHVPSMEDNPEEAIKTNVLGTKNVIDA 114

Query: 135 AKRVG-ARILLTST 147
           A   G  + +  ST
Sbjct: 115 AIENGVEKFVCIST 128

UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287

>gnl|CDD|178047 PLN02427, PLN02427, UDP-apiose/xylose synthase

 Score = 66.0 bits (161), Expect = 4e-13
 Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 15/147 (10%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK----WIGHPRFEL--I 86
           + I + G  GFIGSHL +KLM    ++V+ +D Y    K  L      W G  +F    I
Sbjct: 15  LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINI 74

Query: 87  RHDVTEPLLIEV-DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLT 145
           +HD     LI++ D   +LA   +P  Y   P+ TI +N I  L ++        R++  
Sbjct: 75  KHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHF 134

Query: 146 STSEVYGD------PLVHP--QDESYW 164
           ST EVYG       P  HP  QD +++
Sbjct: 135 STCEVYGKTIGSFLPKDHPLRQDPAFY 161

Length = 386

>gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 66.1 bits (162), Expect = 5e-13
 Identities = 42/164 (25%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 15  KPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN--------- 65
           +PP                 +LVTGG G IGS L  ++++    E+I+            
Sbjct: 234 RPPVALDTELIGAMLT-GKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLID 292

Query: 66  -YFTGSKDNLRKW--IGHPR-FELIRHDVTEPLLIEVDQIYHLACPASPIFYK------Y 115
                    L+    IG  R  + +   +      +VD ++H A        K      Y
Sbjct: 293 MELREKFPELKLRFYIGDVRDRDRVERAMEG---HKVDIVFHAAA------LKHVPLVEY 343

Query: 116 NPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVHP 158
           NP + IKTNV+GT N+   A + G  + +L ST     D  V+P
Sbjct: 344 NPEEAIKTNVLGTENVAEAAIKNGVKKFVLIST-----DKAVNP 382

Length = 588

>gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 23/148 (15%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVT 91
           M+ILVTGGAGFIGS +V  ++ N ++ V+ VD   + G+ ++L       R+     D+ 
Sbjct: 1   MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADIC 60

Query: 92  EPLLIEVDQIY---------HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA------- 135
           +    E+D+I+         HLA  +        P   I+TN++GT  +L  A       
Sbjct: 61  D--RAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSAL 118

Query: 136 ---KRVGARILLTSTSEVYGDPLVHPQD 160
              K+   R    ST EVYGD L HP +
Sbjct: 119 DEDKKNAFRFHHISTDEVYGD-LPHPDE 145

Length = 352

>gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family protein; Provisional

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 10/126 (7%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
            ++L+ G  GFIG HL  +++E    EV  +D       D L   + HPR      D+T 
Sbjct: 2   KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM----QTDRLGDLVNHPRMHFFEGDITI 57

Query: 92  -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
                E  + + D I  L   A+P  Y   P++  + +    L ++  A + G  ++  S
Sbjct: 58  NKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPS 117

Query: 147 TSEVYG 152
           TSEVYG
Sbjct: 118 TSEVYG 123

Length = 347

>gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 21/130 (16%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEP 93
           I+VTGGAGFIGS+LV  L E    +++VVDN   G K  NL          +I   + + 
Sbjct: 1   IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHKFLNLAD-------LVIADYIDKE 53

Query: 94  LLIE---------VDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
             ++         ++ I+H  AC  +    + +    ++ N   +  +L      G   +
Sbjct: 54  DFLDRLEKGAFGKIEAIFHQGACSDT---TETDGEYMMENNYQYSKRLLDWCAEKGIPFI 110

Query: 144 LTSTSEVYGD 153
             S++  YGD
Sbjct: 111 YASSAATYGD 120

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314

>gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 15/137 (10%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
            +LVTGG+GF G  LV +L+E     V   D    G    L  W  HP  E ++ D+T+ 
Sbjct: 1   SVLVTGGSGFFGERLVKQLLERGGTYVRSFDIAPPGEA--LSAW-QHPNIEFLKGDITDR 57

Query: 94  LLIE-----VDQIYHLACPASPIFYKYNPVKTI-KTNVIGTLNMLGLAKRVGARILL-TS 146
             +E      D ++H A           P     + NV GT N+L   +R G +  + TS
Sbjct: 58  NDVEQALSGADCVFHTAAIVPL----AGPRDLYWEVNVGGTQNVLDACQRCGVQKFVYTS 113

Query: 147 TSEV-YGDPLVHPQDES 162
           +S V +G   +H  DE+
Sbjct: 114 SSSVIFGGQNIHNGDET 130

Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331

>gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 20/122 (16%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDV 90
           + VTGG GF+G HLV +L+EN    +++V +      +   +         R  ++  D+
Sbjct: 1   VFVTGGTGFLGRHLVKRLLENGFKVLVLVRS--ESLGEAHERIEEAGLEADRVRVLEGDL 58

Query: 91  TEP-----------LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
           T+P           L  +VD + H A  AS   ++       +TN+ GT ++L LA R+ 
Sbjct: 59  TQPNLGLSAAASRELAGKVDHVIHCA--ASY-DFQAPNEDAWRTNIDGTEHVLELAARLD 115

Query: 140 AR 141
            +
Sbjct: 116 IQ 117

This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein

 Score = 59.8 bits (146), Expect = 4e-11
 Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 23/130 (17%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLRKWIGHPRFELIRHDVT 91
           +LVTGG G IGS L  ++++    ++I+         +    LR+    P+      DV 
Sbjct: 1   VLVTGGGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIRQELRQEYNDPKLRFFIGDVR 60

Query: 92  EPLLIE-------VDQIYHLACPASPIFYK------YNPVKTIKTNVIGTLNMLGLAKRV 138
           +   +E       VD ++H A        K      YNP++ IKTNV+GT N+   A   
Sbjct: 61  DRERLERAMEQHGVDTVFHAAA------LKHVPLVEYNPMEAIKTNVLGTENVAEAAIEN 114

Query: 139 GA-RILLTST 147
           G  + +L ST
Sbjct: 115 GVEKFVLIST 124

This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280

>gnl|CDD|236156 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 18/129 (13%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           R+L+ G  GFIG+HL ++L+ ++  EV  +D    GS D + +++GHPRF  +  D++  
Sbjct: 317 RVLILGVNGFIGNHLTERLLRDDNYEVYGLD---IGS-DAISRFLGHPRFHFVEGDIS-- 370

Query: 94  LLIEVDQI-YH---------LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
             I  + I YH         L   A+PI Y  NP++  + +    L ++    +   RI+
Sbjct: 371 --IHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRII 428

Query: 144 LTSTSEVYG 152
             STSEVYG
Sbjct: 429 FPSTSEVYG 437

Length = 660

>gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional

 Score = 60.0 bits (145), Expect = 5e-11
 Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 20/148 (13%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTE 92
           +IL+TGGAGFIGS LV  ++    + V+VVD   + G+  +L       RF   + D+ +
Sbjct: 3   KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62

Query: 93  PLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA---------- 135
              +         D + HLA  +        P   I+TN++GT  +L  A          
Sbjct: 63  RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122

Query: 136 KRVGARILLTSTSEVYGDPLVHPQDESY 163
           K+   R    ST EVYGD  +H  D+ +
Sbjct: 123 KKSAFRFHHISTDEVYGD--LHSTDDFF 148

Length = 355

>gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein

 Score = 58.4 bits (142), Expect = 9e-11
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 30/151 (19%)

Query: 37  VTGGAGFIGSHLVDKLMENEKNEVIVV----DNYFTGSKDNLRKWIGHPRFELIRH---- 88
           +TG  GF+G  L++KL+ +     I       +  +  +   ++ + +  F+ ++     
Sbjct: 1   LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERI 60

Query: 89  -----DVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIK-TNVIGTLNM 131
                D++EP L            EVD I H A  A+  F +  P   ++ TNV+GT  +
Sbjct: 61  IPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNA--ATVNFVE--PYSDLRATNVLGTREV 116

Query: 132 LGLAKRVGARILL-TSTSEVYGDPLVHPQDE 161
           L LAK++        ST+ V G+     +++
Sbjct: 117 LRLAKQMKKLPFHHVSTAYVNGERGGLLEEK 147

This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245

>gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 36/129 (27%), Positives = 51/129 (39%), Gaps = 27/129 (20%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF---TGSKDNLRKWI---GHPRFELI 86
           MR  VTGG GFIG  LV +L++  +   +    +      S   L       G  R   +
Sbjct: 1   MRYFVTGGTGFIGRRLVSRLLDRRREATV----HVLVRRQSLSRLEALAAYWGADRVVPL 56

Query: 87  RHDVTEPLL----------IEVDQIYHLACPASPIFYKYNP--VKTIKTNVIGTLNMLGL 134
             D+TEP L           ++D + HLA       Y            NV GT N++ L
Sbjct: 57  VGDLTEPGLGLSEADIAELGDIDHVVHLAA-----IYDLTADEEAQRAANVDGTRNVVEL 111

Query: 135 AKRVGARIL 143
           A+R+ A   
Sbjct: 112 AERLQAATF 120

Length = 657

>gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 18/145 (12%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEV--IVVDNY-FTGSKDNLRK--WIGHPRFELIRH 88
             L+TG  G  GS+L  +L+  +  EV  I   +  F   + +L +   +  PR  L   
Sbjct: 4   VALITGITGQDGSYLA-ELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYG 62

Query: 89  DVTEP-----LLIEV--DQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVG- 139
           D+T+      +L EV  D+IY+LA  +   + ++  P  T   + IGTL +L   + +G 
Sbjct: 63  DLTDSSNLLRILEEVQPDEIYNLAAQSHVGVSFE-QPEYTADVDAIGTLRLLEAIRILGE 121

Query: 140 --ARILLTSTSEVYGDPLVHPQDES 162
              R    STSE+YG     PQ E+
Sbjct: 122 KKTRFYQASTSELYGLVQEIPQKET 146

Length = 345

>gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 47/139 (33%), Positives = 63/139 (45%), Gaps = 16/139 (11%)

Query: 36  LVTGGAGFIGSHLVDKLM-ENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP- 93
           LVTGG GF+G H+V  L+ E E  EV V D  F+         +       I  DVT+  
Sbjct: 1   LVTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPELLEDFSKLQ--VITYIEGDVTDKQ 58

Query: 94  ----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL-TSTS 148
                L   D + H A     +F K      +K NV GT N+L    + G R+L+ TS+ 
Sbjct: 59  DLRRALQGSDVVIHTAA-IIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLVYTSSM 117

Query: 149 EV-----YGDPLVHPQDES 162
           EV     YG P +   DE+
Sbjct: 118 EVVGPNSYGQP-IVNGDET 135

The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280

>gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 31/151 (20%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIR 87
           MR+LVTGG+G+IGSH   +L++N  ++V+++DN    SK ++   I       P F  + 
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVVILDN-LCNSKRSVLPVIERLGGKHPTF--VE 56

Query: 88  HDV-TEPLLIE------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLG 133
            D+  E LL E      +D + H A           P+ Y  N       NV GTL ++ 
Sbjct: 57  GDIRNEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-------NVNGTLRLIS 109

Query: 134 LAKRVGAR-ILLTSTSEVYGDPLVHPQDESY 163
             +    + ++ +S++ VYGD    P  ES+
Sbjct: 110 AMRAANVKNLIFSSSATVYGDQPKIPYVESF 140

Length = 338

>gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 14/134 (10%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M++L+TG +GF+G  L ++L+ +  NE +++ +  +    +     G PR   I  D+  
Sbjct: 1   MKVLITGASGFVGQRLAERLLSDVPNERLILIDVVSPKAPS-----GAPRVTQIAGDLAV 55

Query: 93  PLLIEV------DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILL 144
           P LIE       D ++HLA   S      +     + NV GT N+L   ++ G   R + 
Sbjct: 56  PALIEALANGRPDVVFHLAAIVSGGAEA-DFDLGYRVNVDGTRNLLEALRKNGPKPRFVF 114

Query: 145 TSTSEVYGDPLVHP 158
           TS+  VYG PL +P
Sbjct: 115 TSSLAVYGLPLPNP 128

Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 23/153 (15%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHD 89
            +LVTG  GFI SH+V++L++        V +        L+  +       R E +  D
Sbjct: 1   LVLVTGATGFIASHIVEQLLKAGYKVRGTVRS--LSKSAKLKALLKAAGYNDRLEFVIVD 58

Query: 90  VT------EPLLIEVDQIYHLACPASPIFYKYNPVKT--IKTNVIGTLNMLGLAKRVGA- 140
                   +  L  VD + H+   ASP  +     +   I   V GTLN+L  AK  G+ 
Sbjct: 59  DLTAPNAWDEALKGVDYVIHV---ASPFPFTGPDAEDDVIDPAVEGTLNVLEAAKAAGSV 115

Query: 141 -RILLTSTSEVYGDPLVHPQ----DESYWGNVN 168
            R++LTS+    GDP          E  W ++ 
Sbjct: 116 KRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLT 148

This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301

>gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 27/152 (17%)

Query: 28  FFQSNMRILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYF-TGSKDNL-RKWIG 79
           F+Q   R+LVTG  GF GS L   L E          +     N F   + DN      G
Sbjct: 1   FWQ-GKRVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTNPNLFELANLDNKISSTRG 59

Query: 80  HPR-FELIRHDVTEPLLIEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLA 135
             R    +R  + E    E + ++HLA  A P+    YK +PV+T +TNV+GT+N+L   
Sbjct: 60  DIRDLNALREAIRE---YEPEIVFHLA--AQPLVRLSYK-DPVETFETNVMGTVNLLEAI 113

Query: 136 KRVG-ARILLTSTSE-VYGDPLVHPQDESYWG 165
           +  G  + ++  TS+  Y +       E  WG
Sbjct: 114 RETGSVKAVVNVTSDKCYEN------KEWGWG 139

This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336

>gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 25/141 (17%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTE 92
           ILVTG AG +G  L  +L  + +   V  +D          R+  G  P+ E +R D+ +
Sbjct: 1   ILVTGAAGGLGRLLARRLAASPRVIGVDGLD---------RRRPPGSPPKVEYVRLDIRD 51

Query: 93  PLLI------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT 145
           P         E D + HLA    P     +  +  + NV GT N+L      G  R+++T
Sbjct: 52  PAAADVFREREADAVVHLAFILDPP---RDGAERHRINVDGTQNVLDACAAAGVPRVVVT 108

Query: 146 STSEVYG----DPLVHPQDES 162
           S+  VYG    +P    +D  
Sbjct: 109 SSVAVYGAHPDNPAPLTEDAP 129

Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306

>gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 25/142 (17%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
             LV GG+GF+G HLV++L+      V V D   T   D         R +    D+T+P
Sbjct: 1   SCLVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELDPSS----SGRVQFHTGDLTDP 56

Query: 94  LLIE-------VDQIYHLACPAS----PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARI 142
             +E        + ++H A P       ++Y        K NV GT N++   ++ G + 
Sbjct: 57  QDLEKAFNEKGPNVVFHTASPDHGSNDDLYY--------KVNVQGTRNVIEACRKCGVKK 108

Query: 143 LL--TSTSEVYGDPLVHPQDES 162
           L+  +S S V+    +   DES
Sbjct: 109 LVYTSSASVVFNGQDIINGDES 130

This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335

>gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 14/130 (10%)

Query: 36  LVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNL---RKWIGHPRFELIRHDV 90
           LVTGG GF+G H++  L+E ++   E+ V+D  F    + +    K  G      I  D+
Sbjct: 3   LVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAF--GPELIEHFEKSQGKTYVTDIEGDI 60

Query: 91  TEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL- 144
            +   +      V  + H A     +F   N  +  + NV GT  +L    +   + L+ 
Sbjct: 61  KDLSFLFRACQGVSVVIHTAAIVD-VFGPPNYEELEEVNVNGTQAVLEACVQNNVKRLVY 119

Query: 145 TSTSEVYGDP 154
           TS+ EV G  
Sbjct: 120 TSSIEVAGPN 129

This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354

>gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 28/141 (19%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---FTGSKDNLRKWIGHPRFELIRHDV 90
            ILVTGGAG+IGSH V +L+     +V+V+DN       +   +++  G     L+ H V
Sbjct: 7   TILVTGGAGYIGSHTVLQLLL-AGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKV 65

Query: 91  T-------EPLLIE--VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
                   E +      D + H A         A P+ Y  N       N++GT+N+L +
Sbjct: 66  DLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDN-------NLVGTINLLEV 118

Query: 135 AKRVGARILLTSTS-EVYGDP 154
             + G + L+ S+S  VYG P
Sbjct: 119 MAKHGCKKLVFSSSATVYGQP 139

Length = 352

>gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme

 Score = 51.3 bits (123), Expect = 6e-08
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 13/131 (9%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKN-EVIVVD--NYFTGSKDNLRKWIGHPRFELIRHDVT 91
           IL+TG AGFI SH+ ++L+ N  + +++V+D  +Y +  K NL      P F+ ++ D+ 
Sbjct: 9   ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLK-NLNPSKSSPNFKFVKGDIA 67

Query: 92  EP-----LLI--EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RI 142
                  LLI   +D I H A          N  +  K N+ GT  +L   K  G   R 
Sbjct: 68  SADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRF 127

Query: 143 LLTSTSEVYGD 153
           +  ST EVYG+
Sbjct: 128 IHVSTDEVYGE 138

Length = 668

>gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs

 Score = 50.7 bits (122), Expect = 7e-08
 Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 20/148 (13%)

Query: 37  VTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP----RFELIRHDVTE 92
           VTG +GFIGS LV +L++        V +   G +  +   +       R +L + D+ +
Sbjct: 3   VTGASGFIGSWLVKRLLQRGYTVRATVRD--PGDEKKVAHLLELEGAKERLKLFKADLLD 60

Query: 93  PLLIE-----VDQIYHLACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA--RILL 144
               +      D ++H+A P    F  +    + I+  V GTLN+L    +  +  R++ 
Sbjct: 61  YGSFDAAIDGCDGVFHVASP--VDFDSEDPEEEMIEPAVKGTLNVLEACAKAKSVKRVVF 118

Query: 145 T-STSEVYGDPLVHPQ---DESYWGNVN 168
           T S + V  +P        DES W +++
Sbjct: 119 TSSVAAVVWNPNRGEGKVVDESCWSDLD 146

This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional

 Score = 50.9 bits (121), Expect = 8e-08
 Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 22/148 (14%)

Query: 26  SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RK 76
           +K   +  R L+TG AGFIGS L+++L+   +  VI +DN+ TG + NL          +
Sbjct: 9   TKLVLAPKRWLITGVAGFIGSGLLEELLFLNQT-VIGLDNFSTGYQHNLDDVRTSVSEEQ 67

Query: 77  WIGHPRFELIRHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM 131
           W    RF  I+ D+      +     VD + H A   S      +P+ T   N+ G LNM
Sbjct: 68  W---SRFIFIQGDIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNM 124

Query: 132 LGLAKRVG-ARILLTSTSEVYGDPLVHP 158
           L  A+    +     ++S  YGD   HP
Sbjct: 125 LTAARDAHVSSFTYAASSSTYGD---HP 149

Length = 348

>gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs

 Score = 50.7 bits (121), Expect = 8e-08
 Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 37/154 (24%)

Query: 35  ILVTGGAGFIGSHLVDKLME-------------NEKNEVIVVDNYFTGSKDNLRKWIGHP 81
           +LVTG +GF+ SH+V++L+E               K    ++D         L    G  
Sbjct: 1   VLVTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVNHLLD---------LDAKPGR- 50

Query: 82  RFELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
             EL   D+T+    +        ++H+A P S  F   +P + IK  + GTLN L  A 
Sbjct: 51  -LELAVADLTDEQSFDEVIKGCAGVFHVATPVS--FSSKDPNEVIKPAIGGTLNALKAAA 107

Query: 137 RVGA--RILLTSTSEVYGDPLVHPQ----DESYW 164
              +  R +LTS++     P  + +    DE  W
Sbjct: 108 AAKSVKRFVLTSSAGSVLIPKPNVEGIVLDEKSW 141

This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295

>gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 22/133 (16%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           ++LVTG  GFIG  LVDKL+   +   I V N                  EL   D    
Sbjct: 1   KVLVTGANGFIGRALVDKLLSRGEEVRIAVRN-------AENAEPSVVLAELPDIDSFTD 53

Query: 94  LLIEVDQIYHLAC------PASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGAR--ILL 144
           L + VD + HLA                Y  V     N   T  +   A R G +  + L
Sbjct: 54  LFLGVDAVVHLAARVHVMNDQGADPLSDYRKV-----NTELTRRLARAAARQGVKRFVFL 108

Query: 145 TSTSEVYGDPLVH 157
            S+ +V G+  V 
Sbjct: 109 -SSVKVNGEGTVG 120

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303

>gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 23/123 (18%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M+IL+TG  G +G+ L   L      EVI  D                   ++   D   
Sbjct: 1   MKILITGANGQLGTELRRALPGEF--EVIATD---------------RAELDITDPDAVL 43

Query: 93  PLLIEV--DQIYHLACPASPIFYK--YNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 148
            ++ E   D + + A  A     K    P      N  G  N+   A  VGAR++  ST 
Sbjct: 44  EVIRETRPDVVINAA--AYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTD 101

Query: 149 EVY 151
            V+
Sbjct: 102 YVF 104

Length = 281

>gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 23/118 (19%)

Query: 29  FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-----GHPRF 83
             +N  IL+TGG G  G   + +L+EN   + I++  Y   S+D L++W        P  
Sbjct: 1   MFNNKSILITGGTGSFGKAFISRLLENYNPKKIII--Y---SRDELKQWEMQQKFPAPCL 55

Query: 84  ELIRHDVT-----EPLLIEVDQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNML 132
                DV         L  VD + H A     PA+    +YNP + I+TN+ G  N++
Sbjct: 56  RFFIGDVRDKERLTRALRGVDYVVHAAALKQVPAA----EYNPFECIRTNINGAQNVI 109

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324

>gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 20/130 (15%)

Query: 34  RILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFE--LIRHDV 90
           RIL+TGG G IGS L   L +   K+ VI  D         +RK   H          DV
Sbjct: 1   RILITGGLGQIGSELAKLLRKRYGKDNVIASD---------IRKPPAHVVLSGPFEYLDV 51

Query: 91  TEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
            +   +E       +  I HLA   S +  K NP      N+ G  N+L LA+    RI 
Sbjct: 52  LDFKSLEEIVVNHKITWIIHLAALLSAVGEK-NPPLAWDVNMNGLHNVLELAREHNLRIF 110

Query: 144 LTSTSEVYGD 153
           + ST   +G 
Sbjct: 111 VPSTIGAFGP 120

This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308

>gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)

Query: 33  MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           M++LVTG  GF+GS +V  L+E  E+  V+V          + R   G    E++  D+ 
Sbjct: 1   MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPT------SDRRNLEGLD-VEIVEGDLR 53

Query: 92  EPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT 145
           +P  +         ++H+A  A    +  +P +    NV GT N+L  A   G  R++ T
Sbjct: 54  DPASLRKAVAGCRALFHVA--ADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYT 111

Query: 146 ST 147
           S+
Sbjct: 112 SS 113

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328

>gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs

 Score = 47.6 bits (114), Expect = 9e-07
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 21/135 (15%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-NLRKWIGHPRFELIRHDVTE 92
           +ILVTG  G +GS +V  L       V+     F  SK+ +L              +   
Sbjct: 1   KILVTGHRGLVGSAIVRVLARRGYENVV-----FRTSKELDLTDQ-----------EAVR 44

Query: 93  PLLIEV--DQIYHLACPASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVGARILLT-STS 148
               +   D + HLA     I      P   ++ N++   N++  A R G + L+   +S
Sbjct: 45  AFFEKEKPDYVIHLAAKVGGIVANMTYPADFLRDNLLINDNVIHAAHRFGVKKLVFLGSS 104

Query: 149 EVYGDPLVHPQDESY 163
            +Y D    P DES 
Sbjct: 105 CIYPDLAPQPIDESD 119

GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK 71
          I+VTGGAGFIGS++V  L +    +++VVDN   G+K
Sbjct: 2  IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK 38

Length = 308

>gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 40/161 (24%), Positives = 60/161 (37%), Gaps = 34/161 (21%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TG  G +G  LV +L   E   V+ +                  + +L   +  E 
Sbjct: 1   RILITGANGQLGRELVQQLS-PEGRVVVALT---------------RSQLDLTDPEALER 44

Query: 94  LL--IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 151
           LL  I  D + + A        + +P K    N +   N+   A R GAR++  ST  V+
Sbjct: 45  LLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVF 104

Query: 152 ----GDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
                 P     D       NP+ ++      G  KL GE 
Sbjct: 105 DGEGKRPY-REDDA-----TNPLNVY------GQSKLAGEQ 133

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287

>gnl|CDD|200381 TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 8/124 (6%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           +L+TGG G  G+ ++ + ++ +  E+ +        +D++RK   + + +    DV +  
Sbjct: 7   LLITGGTGSFGNAVLRRFLDTDIKEIRIFSRD-EKKQDDMRKKYNNSKLKFYIGDVRDYR 65

Query: 95  LI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNML--GLAKRVGARILLTST 147
            I      VD IYH A        +++P++ +KTNV+GT N+L   +A  V   + L++ 
Sbjct: 66  SILNATRGVDFIYHAAALKQVPSCEFHPMEAVKTNVLGTENVLEAAIANGVKRVVCLSTD 125

Query: 148 SEVY 151
             VY
Sbjct: 126 KAVY 129

The FnlA enzyme is the first step in the biosynthesis of UDP-FucNAc from UDP-GlcNAc in E. coli (along with FnlB and FnlC). The proteins identified by this model include FnlA homologs in the O-antigen clusters of O4, O25, O26, O29 (Shigella D11), O118, O145 and O172 serotype strains, all of which produce O-antigens containing FucNAc (or the further modified FucNAm). A homolog from Pseudomonas aerugiosa serotype O11, WbjB, also involved in the biosynthesis of UDP-FucNAc has been characterized and is now believed to carry out both the initial 4,6-dehydratase reaction and the subsequent epimerization of the resulting methyl group at C-5. A phylogenetic tree of related sequences shows a distinct clade of enzymes involved in the biosynthesis of UDP-QuiNAc (Qui=qinovosamine). This clade appears to be descendant from the common ancestor of the Pseudomonas and E. coli fucose-biosynthesis enzymes. It has been hypothesized that the first step in the biosynthesis of these two compounds may be the same, and thus that these enzymes all have the same function. At present, lacking sufficient confirmation of this, the current model trusted cutoff only covers the tree segment surrounding the E. coli genes. The clades containing the Pseudomonas and QuiNAc biosynthesis enzymes score above the noise cutoff. Immediately below the noise cutoff are enzymes involved in the biosynthesis of UDP-RhaNAc (Rha=rhamnose), which again may or may not produce the same product. Length = 337

>gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 28/152 (18%)

Query: 29  FQSNMRILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYFT--GSKDNLRKWIGH 80
           F    ++LVTG  GF GS L   L+E          +     N F        +    G 
Sbjct: 1   FWQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGD 60

Query: 81  PR-FELIRHDVTEPLLIEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK 136
            R    +R  + E    + + ++HLA  A P+    Y   P++T +TNV+GT+N+L   +
Sbjct: 61  IRDAAKLRKAIAE---FKPEIVFHLA--AQPLVRKSYAD-PLETFETNVMGTVNLLEAIR 114

Query: 137 RVG---ARILLTSTSEVYGDPLVHPQDESYWG 165
            +G   A + +T + + Y +      DE  WG
Sbjct: 115 AIGSVKAVVNVT-SDKCYRN------DEWVWG 139

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349

>gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 36/131 (27%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVV------------------DNYFTGSKDNLR 75
            +L+TG  GF+G++L+ +L++ +    I                      Y         
Sbjct: 1   TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGL--NLWDE 58

Query: 76  KWIGHPRFELIRHDVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTN 124
             +   R +++  D+++P L            EVD I H    A+ + + Y   +    N
Sbjct: 59  LEL--SRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIH--NGAN-VNWVYPYEELKPAN 113

Query: 125 VIGTLNMLGLA 135
           V+GT  +L LA
Sbjct: 114 VLGTKELLKLA 124

This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290

>gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 20/127 (15%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW-IGHPRFELIRHDVTEP 93
           IL+ G  GFIG  L  +L+  + +EV ++       ++  R          ++  D+ + 
Sbjct: 1   ILILGATGFIGRALARELL-EQGHEVTLLV------RNTKRLSKEDQEPVAVVEGDLRDL 53

Query: 94  LLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 147
             +      VD + HLA   +P   +       + +V GT N+L  AK  G    +  S+
Sbjct: 54  DSLSDAVQGVDVVIHLA--GAPRDTRDF----CEVDVEGTRNVLEAAKEAGVKHFIFISS 107

Query: 148 SEVYGDP 154
              YGD 
Sbjct: 108 LGAYGDL 114

Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176

>gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 34/152 (22%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKN-EVIVV----DNYFTGSKD--NLRKWIGHPRFEL 85
             +L+TG  GF+G  L++KL+ +  +   I +     +  +  +    L K     R   
Sbjct: 1   KSVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGRN 60

Query: 86  -----------IRHDVTEP-----------LLIEVDQIYHLACPASPIFYKYNPVKTIKT 123
                      I  D++EP           L+ EV+ I H A  A+  F +    + +  
Sbjct: 61  LNPLFESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCA--ATVTFDERLD-EALSI 117

Query: 124 NVIGTLNMLGLAKRV--GARILLTSTSEVYGD 153
           NV+GTL +L LAKR       +  ST+ V GD
Sbjct: 118 NVLGTLRLLELAKRCKKLKAFVHVSTAYVNGD 149

SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320

>gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 28/149 (18%)

Query: 33  MRILVTGGAGFIGSHLVDKLMEN----------EKNE----------VIVVDNYFTGSKD 72
             +L+TG  GF+G++L+ +L++            +++            +  ++   S D
Sbjct: 1   RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSAD 60

Query: 73  NLRKWIGH---PRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTL 129
            +    G    P   L      E L   VD I H    A+ + + +   +    NV+GT 
Sbjct: 61  RVEVVAGDLAEPDLGLSERTWQE-LAENVDLIIH---NAALVNHVFPYSELRGANVLGTA 116

Query: 130 NMLGLAKRVGARIL-LTSTSEVYGDPLVH 157
            +L LA     + L   S+  V       
Sbjct: 117 EVLRLAATGKPKPLHYVSSISVGETEYYS 145

Length = 382

>gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65
          M+ILVTG  GF+G  +V +L+   +   +    
Sbjct: 1  MKILVTGATGFVGGAVVRELL--ARGHEVRAAV 31

Length = 275

>gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 37/132 (28%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           +IL+TG  G +G  LV  L E    EVI                 G  R  L + D+T+P
Sbjct: 1   KILITGATGMLGRALVRLLKERGY-EVIG---------------TGRSRASLFKLDLTDP 44

Query: 94  L-LIEV------DQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
             + E       D I + A       C + P           + NV+   N+   AK VG
Sbjct: 45  DAVEEAIRDYKPDVIINCAAYTRVDKCESDPE-------LAYRVNVLAPENLARAAKEVG 97

Query: 140 ARILLTSTSEVY 151
           AR++  ST  V+
Sbjct: 98  ARLIHISTDYVF 109

dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280

>gnl|CDD|187535 cd02266, SDR, Short-chain dehydrogenases/reductases (SDR)

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 33/124 (26%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           +LVTGG+G IG  +   L      +V+VV                  R +++ H+     
Sbjct: 1   VLVTGGSGGIGGAIARWLASRGSPKVLVVS-----------------RRDVVVHNAAILD 43

Query: 95  LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK-----RVGARILLTSTSE 149
              +  +                 + I+ NV+GT  +L  A+     +   R +L S+  
Sbjct: 44  DGRLIDL-----------TGSRIERAIRANVVGTRRLLEAARELMKAKRLGRFILISSVA 92

Query: 150 VYGD 153
               
Sbjct: 93  GLFG 96

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase (KR) domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 186

>gnl|CDD|233427 TIGR01472, gmd, GDP-mannose 4,6-dehydratase

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 23/96 (23%)

Query: 73  NLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNML 132
           NLR+ I          D  +P      +IY+LA  +        P  T   + IGTL +L
Sbjct: 69  NLRRII----------DEIKP-----TEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLL 113

Query: 133 ------GLAKRVGARILLTSTSEVYGDPLVHPQDES 162
                 GL K V  +    STSE+YG     PQ+E+
Sbjct: 114 EAVRTLGLIKSV--KFYQASTSELYGKVQEIPQNET 147

Alternate name: GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of E. coli. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 343

>gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 41/158 (25%), Positives = 55/158 (34%), Gaps = 43/158 (27%)

Query: 33  MRILVTGGAGFIG----SHLVDKLMENEKNEVIVVDNYFTGSKDN--------------- 73
           M++L+ GG G+ G     HL  +      +EV +VDN      D                
Sbjct: 1   MKVLILGGDGYCGWPTALHLSKR-----GHEVCIVDNLVRRRIDVELGLESLTPIASIHE 55

Query: 74  -LRKW---IGHPRFELIRHDVTEPLL-------IEVDQIYHLA----CPASPIFYKYNPV 118
            LR W    G    E    D  +           E D + H A     P S I  + +  
Sbjct: 56  RLRAWKELTGK-TIEFYVGDACDYEFLAELLASHEPDAVVHFAEQRSAPYSMI-DREHAN 113

Query: 119 KTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDP 154
            T   NVIGTLN+L   K       ++   T   YG P
Sbjct: 114 YTQHNNVIGTLNLLFAIKEFDPDCHLVKLGTMGEYGTP 151

Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382

>gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 10/75 (13%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP- 93
           +LVTG  G++G  LV +L++ E ++V         S + L       R  ++R D+ +P 
Sbjct: 1   VLVTGATGYVGGRLVPRLLQ-EGHQVRA----LVRSPEKLADRPWSERVTVVRGDLEDPE 55

Query: 94  ----LLIEVDQIYHL 104
                L  +D  Y+L
Sbjct: 56  SLRAALEGIDTAYYL 70

This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 21/132 (15%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
             V G +G IG  +  + +     +V +V         +  K    P  E++  D  +  
Sbjct: 2   AHVLGASGPIGREVA-RELRRRGWDVRLVSR-------SGSKLAWLPGVEIVAADAMDAS 53

Query: 95  LIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149
            +       D IYH A PA   + +  P   +  NV+        A+  GA+++L     
Sbjct: 54  SVIAAARGADVIYHCANPAYTRWEELFP--PLMENVVAA------AEANGAKLVLPGNVY 105

Query: 150 VYGDPLVHPQDE 161
           +YG     P  E
Sbjct: 106 MYGPQAGSPITE 117

These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302

>gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 33 MRILVTGGAGFIGSHLVDKLMEN 55
          M++ VTG  GFIGS +V +L+  
Sbjct: 1  MKVFVTGATGFIGSAVVRELVAA 23

This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291

>gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD 64
             +RI +TG  GFI SH+  +L   E + +I  D
Sbjct: 19 SEKLRICITGAGGFIASHIARRLKA-EGHYIIASD 52

Length = 370

>gnl|CDD|187571 cd05261, CAPF_like_SDR_e, capsular polysaccharide assembling protein (CAPF) like, extended (e) SDRs

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 25/123 (20%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M+IL+TG  GFIG +L+ +L E + +++   D                   EL      +
Sbjct: 1   MKILITGAKGFIGKNLIARLKEQKDDDIFFYD-------------RESDESEL------D 41

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR--ILLTSTSEV 150
             L   D I+HLA    P     +  +    NV  T  +L    R G +  ILL+S+ + 
Sbjct: 42  DFLQGADFIFHLAGVNRP----KDEAEFESGNVGLTERLLDALTRNGKKPPILLSSSIQA 97

Query: 151 YGD 153
             D
Sbjct: 98  ALD 100

This subgroup of extended SDRs, includes some members which have been identified as capsular polysaccharide assembling proteins, such as Staphylococcus aureus Cap5F which is involved in the biosynthesis of N-acetyl-l-fucosamine, a constituent of surface polysaccharide structures of S. aureus. This subgroup has the characteristic active site tetrad and NAD-binding motif of extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 248

>gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 35/164 (21%), Positives = 53/164 (32%), Gaps = 44/164 (26%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           ILVTG  G +G  L   L   E+   +V               +  P  +L   +    L
Sbjct: 1   ILVTGANGQLGRELTRLL--AERGVEVVA--------------LDRPELDLTDPEAVAAL 44

Query: 95  LIEV--DQIYHLACPASPIFY------KYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
           + E   D + + A       Y      +  P      N +G  N+       GA ++  S
Sbjct: 45  VREARPDVVVNAA------AYTAVDKAESEPELAYAVNALGPGNLAEACAARGAPLIHIS 98

Query: 147 TSEVY-GDPLV--HPQDESYWGNVNPIGMFSFVLKDGIMKLIGE 187
           T  V+ G         D        P+ ++      G  KL GE
Sbjct: 99  TDYVFDGAKGGPYREDDP-----TGPLNVY------GRTKLAGE 131

L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	99.95
PLN02166	436	dTDP-glucose 4,6-dehydratase	99.93
PLN02206	442	UDP-glucuronate decarboxylase	99.93
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	99.92
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	99.91
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	99.9
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	99.9
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	99.89
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	99.89
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	99.89
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.88
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	99.88
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	99.88
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	99.88
PLN02427	386	UDP-apiose/xylose synthase	99.88
PLN02240	352	UDP-glucose 4-epimerase	99.87
PLN02653	340	GDP-mannose 4,6-dehydratase	99.87
PLN02214	342	cinnamoyl-CoA reductase	99.87
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	99.87
PLN02572	442	UDP-sulfoquinovose synthase	99.86
PLN02896	353	cinnamyl-alcohol dehydrogenase	99.86
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	99.86
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	99.86
PLN00198	338	anthocyanidin reductase; Provisional	99.85
PRK10675	338	UDP-galactose-4-epimerase; Provisional	99.85
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	99.85
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	99.84
PLN02778	298	3,5-epimerase/4-reductase	99.84
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	99.84
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	99.83
PLN02260	668	probable rhamnose biosynthetic enzyme	99.83
PLN02650	351	dihydroflavonol-4-reductase	99.83
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	99.83
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	99.83
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	99.83
PLN02695	370	GDP-D-mannose-3',5'-epimerase	99.82
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	99.82
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	99.82
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	99.82
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	99.81
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	99.81
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	99.8
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	99.79
PLN02686	367	cinnamoyl-CoA reductase	99.79
PLN02583	297	cinnamoyl-CoA reductase	99.78
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.78
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	99.77
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	99.77
PLN02996	491	fatty acyl-CoA reductase	99.77
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.76
PRK07201	657	short chain dehydrogenase; Provisional	99.75
PLN02260	668	probable rhamnose biosynthetic enzyme	99.74
TIGR01746	367	Thioester-redct thioester reductase domain. It has	99.74
COG3320	382	Putative dehydrogenase domain of multifunctional n	99.73
KOG0747	331	consensus Putative NAD+-dependent epimerases [Carb	99.72
PRK06197	306	short chain dehydrogenase; Provisional	99.72
PRK05854	313	short chain dehydrogenase; Provisional	99.71
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	99.71
PRK07453	322	protochlorophyllide oxidoreductase; Validated	99.7
PLN02503	605	fatty acyl-CoA reductase 2	99.69
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.68
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	99.68
PRK05717	255	oxidoreductase; Validated	99.67
PRK07774	250	short chain dehydrogenase; Provisional	99.67
PRK06196	315	oxidoreductase; Provisional	99.67
PRK06194	287	hypothetical protein; Provisional	99.67
PRK06482	276	short chain dehydrogenase; Provisional	99.66
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	99.66
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.65
PLN02253	280	xanthoxin dehydrogenase	99.65
CHL00194	317	ycf39 Ycf39; Provisional	99.65
COG0300	265	DltE Short-chain dehydrogenases of various substra	99.64
PRK06180	277	short chain dehydrogenase; Provisional	99.64
PRK09186	256	flagellin modification protein A; Provisional	99.64
PRK08213	259	gluconate 5-dehydrogenase; Provisional	99.64
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	99.64
PRK07806	248	short chain dehydrogenase; Provisional	99.64
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	99.64
PRK08263	275	short chain dehydrogenase; Provisional	99.63
PLN03209	576	translocon at the inner envelope of chloroplast su	99.63
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	99.63
PRK07024	257	short chain dehydrogenase; Provisional	99.63
PRK07890	258	short chain dehydrogenase; Provisional	99.63
PRK12827	249	short chain dehydrogenase; Provisional	99.63
PRK07814	263	short chain dehydrogenase; Provisional	99.62
PRK05866	293	short chain dehydrogenase; Provisional	99.62
PRK12746	254	short chain dehydrogenase; Provisional	99.62
PRK06138	252	short chain dehydrogenase; Provisional	99.62
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.61
PRK07523	255	gluconate 5-dehydrogenase; Provisional	99.61
PRK05993	277	short chain dehydrogenase; Provisional	99.61
PRK06179	270	short chain dehydrogenase; Provisional	99.61
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	99.6
PRK08267	260	short chain dehydrogenase; Provisional	99.6
PRK06914	280	short chain dehydrogenase; Provisional	99.6
PLN00016	378	RNA-binding protein; Provisional	99.6
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	99.6
PRK06128	300	oxidoreductase; Provisional	99.6
PRK09135	249	pteridine reductase; Provisional	99.59
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	99.59
PRK06182	273	short chain dehydrogenase; Validated	99.59
KOG1208	314	consensus Dehydrogenases with different specificit	99.59
PRK07063	260	short chain dehydrogenase; Provisional	99.59
PRK06500	249	short chain dehydrogenase; Provisional	99.59
PRK07478	254	short chain dehydrogenase; Provisional	99.59
PRK05876	275	short chain dehydrogenase; Provisional	99.59
PRK06398	258	aldose dehydrogenase; Validated	99.59
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.58
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	99.58
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.58
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.58
PRK10538	248	malonic semialdehyde reductase; Provisional	99.58
PRK08589	272	short chain dehydrogenase; Validated	99.58
PRK06523	260	short chain dehydrogenase; Provisional	99.58
PRK08277	278	D-mannonate oxidoreductase; Provisional	99.58
PRK08251	248	short chain dehydrogenase; Provisional	99.58
PRK07985	294	oxidoreductase; Provisional	99.57
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	99.57
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	99.57
PRK08643	256	acetoin reductase; Validated	99.57
PRK05872	296	short chain dehydrogenase; Provisional	99.57
PRK07326	237	short chain dehydrogenase; Provisional	99.57
PRK05875	276	short chain dehydrogenase; Provisional	99.57
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	99.57
PRK07035	252	short chain dehydrogenase; Provisional	99.57
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.57
PRK07775	274	short chain dehydrogenase; Provisional	99.56
PRK06181	263	short chain dehydrogenase; Provisional	99.56
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	99.56
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.56
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	99.56
PRK07856	252	short chain dehydrogenase; Provisional	99.56
PRK08339	263	short chain dehydrogenase; Provisional	99.56
PRK08264	238	short chain dehydrogenase; Validated	99.56
PRK06701	290	short chain dehydrogenase; Provisional	99.56
PRK08265	261	short chain dehydrogenase; Provisional	99.56
PRK07067	257	sorbitol dehydrogenase; Provisional	99.56
PRK08219	227	short chain dehydrogenase; Provisional	99.56
PRK12935	247	acetoacetyl-CoA reductase; Provisional	99.55
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	99.55
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.55
PRK07102	243	short chain dehydrogenase; Provisional	99.55
PRK08628	258	short chain dehydrogenase; Provisional	99.55
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.55
PRK06841	255	short chain dehydrogenase; Provisional	99.55
PRK12742	237	oxidoreductase; Provisional	99.55
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.55
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	99.55
PRK07825	273	short chain dehydrogenase; Provisional	99.55
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.54
PRK09134	258	short chain dehydrogenase; Provisional	99.54
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	99.54
PRK09242	257	tropinone reductase; Provisional	99.54
PRK07454	241	short chain dehydrogenase; Provisional	99.54
PRK12747	252	short chain dehydrogenase; Provisional	99.54
PRK07577	234	short chain dehydrogenase; Provisional	99.54
PRK07097	265	gluconate 5-dehydrogenase; Provisional	99.54
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	99.54
PRK09291	257	short chain dehydrogenase; Provisional	99.54
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	99.54
PRK08085	254	gluconate 5-dehydrogenase; Provisional	99.54
PRK12829	264	short chain dehydrogenase; Provisional	99.54
PRK05650	270	short chain dehydrogenase; Provisional	99.54
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	99.54
PRK08226	263	short chain dehydrogenase; Provisional	99.54
PRK12937	245	short chain dehydrogenase; Provisional	99.54
PRK07904	253	short chain dehydrogenase; Provisional	99.54
PRK12939	250	short chain dehydrogenase; Provisional	99.54
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.53
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	99.53
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.53
PRK07677	252	short chain dehydrogenase; Provisional	99.53
PLN02780	320	ketoreductase/ oxidoreductase	99.53
PRK08278	273	short chain dehydrogenase; Provisional	99.53
PRK06172	253	short chain dehydrogenase; Provisional	99.53
PRK12828	239	short chain dehydrogenase; Provisional	99.53
PRK06114	254	short chain dehydrogenase; Provisional	99.52
PRK07074	257	short chain dehydrogenase; Provisional	99.52
PRK07576	264	short chain dehydrogenase; Provisional	99.52
PRK06124	256	gluconate 5-dehydrogenase; Provisional	99.52
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	99.52
PRK12367	245	short chain dehydrogenase; Provisional	99.52
PRK07060	245	short chain dehydrogenase; Provisional	99.52
PRK12743	256	oxidoreductase; Provisional	99.52
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	99.52
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.52
PRK12320	699	hypothetical protein; Provisional	99.52
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.51
PRK05867	253	short chain dehydrogenase; Provisional	99.51
PRK06123	248	short chain dehydrogenase; Provisional	99.51
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.51
KOG2774	366	consensus NAD dependent epimerase [General functio	99.51
PRK09072	263	short chain dehydrogenase; Provisional	99.51
PRK12744	257	short chain dehydrogenase; Provisional	99.51
PRK07109	334	short chain dehydrogenase; Provisional	99.51
PRK08936	261	glucose-1-dehydrogenase; Provisional	99.5
PRK08703	239	short chain dehydrogenase; Provisional	99.5
PRK06057	255	short chain dehydrogenase; Provisional	99.5
PRK06483	236	dihydromonapterin reductase; Provisional	99.5
PRK06949	258	short chain dehydrogenase; Provisional	99.5
PRK07062	265	short chain dehydrogenase; Provisional	99.5
PRK07023	243	short chain dehydrogenase; Provisional	99.5
PRK06101	240	short chain dehydrogenase; Provisional	99.5
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	99.5
PRK05693	274	short chain dehydrogenase; Provisional	99.5
PRK12824	245	acetoacetyl-CoA reductase; Provisional	99.5
PRK06947	248	glucose-1-dehydrogenase; Provisional	99.5
PRK07791	286	short chain dehydrogenase; Provisional	99.5
TIGR02415	254	23BDH acetoin reductases. One member of this famil	99.5
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.49
PRK12938	246	acetyacetyl-CoA reductase; Provisional	99.49
PRK08340	259	glucose-1-dehydrogenase; Provisional	99.49
PRK05855	582	short chain dehydrogenase; Validated	99.49
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	99.49
PRK06139	330	short chain dehydrogenase; Provisional	99.49
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.48
PRK07041	230	short chain dehydrogenase; Provisional	99.48
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	99.48
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	99.48
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	99.48
PRK06940	275	short chain dehydrogenase; Provisional	99.47
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	99.47
KOG2865	391	consensus NADH:ubiquinone oxidoreductase, NDUFA9/3	99.46
PRK06484	520	short chain dehydrogenase; Validated	99.46
PRK07831	262	short chain dehydrogenase; Provisional	99.46
PRK07201	657	short chain dehydrogenase; Provisional	99.46
PRK08017	256	oxidoreductase; Provisional	99.45
PRK07069	251	short chain dehydrogenase; Validated	99.45
PRK06198	260	short chain dehydrogenase; Provisional	99.45
PRK05865	854	hypothetical protein; Provisional	99.45
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	99.44
PRK08177	225	short chain dehydrogenase; Provisional	99.44
PRK08324	681	short chain dehydrogenase; Validated	99.44
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	99.43
PRK06953	222	short chain dehydrogenase; Provisional	99.43
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	99.43
PRK06125	259	short chain dehydrogenase; Provisional	99.43
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	99.43
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.43
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.43
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	99.43
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	99.42
PRK05884	223	short chain dehydrogenase; Provisional	99.42
PRK06924	251	short chain dehydrogenase; Provisional	99.42
PLN00015	308	protochlorophyllide reductase	99.42
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	99.42
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	99.42
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	99.42
PRK07832	272	short chain dehydrogenase; Provisional	99.42
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	99.41
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.41
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	99.41
PRK06484	520	short chain dehydrogenase; Validated	99.4
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	99.4
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.4
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	99.39
PRK08303	305	short chain dehydrogenase; Provisional	99.38
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.37
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.36
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.36
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.35
PRK05599	246	hypothetical protein; Provisional	99.35
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	99.34
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	99.34
PRK07578	199	short chain dehydrogenase; Provisional	99.34
KOG0725	270	consensus Reductases with broad range of substrate	99.34
PRK09009	235	C factor cell-cell signaling protein; Provisional	99.33
COG1028	251	FabG Dehydrogenases with different specificities (	99.33
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	99.33
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	99.3
PRK08862	227	short chain dehydrogenase; Provisional	99.29
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	99.28
KOG1431	315	consensus GDP-L-fucose synthetase [Carbohydrate tr	99.27
KOG1372	376	consensus GDP-mannose 4,6 dehydratase [Carbohydrat	99.25
KOG1611	249	consensus Predicted short chain-type dehydrogenase	99.23
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	99.23
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	99.22
COG2910	211	Putative NADH-flavin reductase [General function p	99.13
PRK06720	169	hypothetical protein; Provisional	99.12
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.12
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	99.02
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	99.0
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	98.95
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	98.94
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	98.93
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	98.91
PTZ00325	321	malate dehydrogenase; Provisional	98.87
PRK08309	177	short chain dehydrogenase; Provisional	98.86
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	98.86
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	98.85
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	98.83
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	98.79
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	98.68
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	98.68
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	98.61
PLN00106	323	malate dehydrogenase	98.55
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.55
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	98.46
KOG1478	341	consensus 3-keto sterol reductase [Lipid transport	98.44
PRK09620	229	hypothetical protein; Provisional	98.43
PRK05086	312	malate dehydrogenase; Provisional	98.42
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.35
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.35
KOG1204	253	consensus Predicted dehydrogenase [Secondary metab	98.29
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	98.2
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	98.18
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	98.17
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	98.17
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.15
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.12
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	98.04
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	98.02
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	98.02
PRK14982	340	acyl-ACP reductase; Provisional	97.99
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.99
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	97.98
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.94
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	97.94
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	97.93
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.91
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	97.89
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.83
KOG2733	423	consensus Uncharacterized membrane protein [Functi	97.82
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.79
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.78
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	97.76
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.71
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.71
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.66
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.65
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.63
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.62
PLN02383	344	aspartate semialdehyde dehydrogenase	97.61
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.56
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.54
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	97.54
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	97.51
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.5
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	97.49
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.48
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.47
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.46
KOG4288	283	consensus Predicted oxidoreductase [General functi	97.45
PRK06223	307	malate dehydrogenase; Reviewed	97.45
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.45
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.44
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.44
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	97.41
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	97.41
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.39
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.39
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	97.39
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.38
PRK05442	326	malate dehydrogenase; Provisional	97.37
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	97.36
PLN02602	350	lactate dehydrogenase	97.36
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	97.34
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	97.3
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.29
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	97.28
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.27
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.26
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.24
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.24
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.23
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.22
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	97.21
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	97.2
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.19
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.19
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	97.17
PTZ00117	319	malate dehydrogenase; Provisional	97.17
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	97.17
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.16
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	97.13
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.12
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	97.09
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.07
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.05
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	97.02
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.02
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.02
PRK08328	231	hypothetical protein; Provisional	96.99
COG3268	382	Uncharacterized conserved protein [Function unknow	96.98
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	96.96
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.96
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.95
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.92
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.89
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.88
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.86
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	96.83
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.81
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.78
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	96.77
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	96.77
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	96.76
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.75
PRK04148	134	hypothetical protein; Provisional	96.73
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.71
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.71
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	96.69
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.68
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.66
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.61
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	96.61
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.6
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.58
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.56
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.55
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	96.54
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.54
PRK08223	287	hypothetical protein; Validated	96.52
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.51
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.5
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.49
PRK07411	390	hypothetical protein; Validated	96.47
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.46
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.45
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.43
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	96.42
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.42
PRK09496	453	trkA potassium transporter peripheral membrane com	96.39
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.36
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	96.32
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.27
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.26
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	96.24
PRK08655	437	prephenate dehydrogenase; Provisional	96.12
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.12
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.11
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.11
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.07
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.04
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	96.04
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.01
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.0
PLN00203	519	glutamyl-tRNA reductase	95.95
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.95
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.94
TIGR00036	266	dapB dihydrodipicolinate reductase.	95.9
PRK13303	265	L-aspartate dehydrogenase; Provisional	95.85
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.84
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.84
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.83
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.8
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	95.79
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	95.76
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.75
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.74
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.72
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	95.71
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.65
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.62
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.57
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	95.49
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.47
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.41
PRK08291	330	ectoine utilization protein EutC; Validated	95.36
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	95.35
KOG3019	315	consensus Predicted nucleoside-diphosphate sugar e	95.34
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	95.32
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.31
PRK07417	279	arogenate dehydrogenase; Reviewed	95.26
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	95.26
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.25
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.24
PRK13304	265	L-aspartate dehydrogenase; Reviewed	95.24
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.18
PRK08818	370	prephenate dehydrogenase; Provisional	95.18
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.18
PRK08618	325	ornithine cyclodeaminase; Validated	95.16
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	95.16
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.13
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.12
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.1
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	95.09
PLN02494	477	adenosylhomocysteinase	95.07
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.07
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	95.07
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	95.06
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.05
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.97
PRK14851	679	hypothetical protein; Provisional	94.97
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	94.97
PRK09496	453	trkA potassium transporter peripheral membrane com	94.97
PRK14852	989	hypothetical protein; Provisional	94.96
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.94
PRK13243	333	glyoxylate reductase; Reviewed	94.94
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	94.93
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	94.93
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	94.89
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.88
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	94.85
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.84
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.83
PTZ00075	476	Adenosylhomocysteinase; Provisional	94.77
COG2130	340	Putative NADP-dependent oxidoreductases [General f	94.77
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	94.75
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	94.75

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=99.95  E-value=6.3e-27  Score=179.99  Aligned_cols=144  Identities=37%  Similarity=0.590  Sum_probs=127.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~~a  105 (190)
                      |+||||||+||||++.+..|++. |++|.+++.-.......+...    ...++++|+.|.+.       .++|.|||+|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~-G~~vvV~DNL~~g~~~~v~~~----~~~f~~gDi~D~~~L~~vf~~~~idaViHFA   75 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKT-GHEVVVLDNLSNGHKIALLKL----QFKFYEGDLLDRALLTAVFEENKIDAVVHFA   75 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCCHHHhhhc----cCceEEeccccHHHHHHHHHhcCCCEEEECc
Confidence            67999999999999999999998 999999988777666555432    26899999999754       3699999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHH
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKL  184 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~  184 (190)
                      |...+..+-+.|.++|+.|+.+|.+|+++|++.++ ++||-||+.+||.+...|++|+     .|..+.++|   |.||+
T Consensus        76 a~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~-----~~~~p~NPY---G~sKl  147 (329)
T COG1087          76 ASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISET-----SPLAPINPY---GRSKL  147 (329)
T ss_pred             cccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCC-----CCCCCCCcc---hhHHH
Confidence            98888888899999999999999999999999998 8999999999999999999999     677788999   88899


Q ss_pred             hhhhc
Q 029640          185 IGELG  189 (190)
Q Consensus       185 ~~E~~  189 (190)
                      ..|+.
T Consensus       148 m~E~i  152 (329)
T COG1087         148 MSEEI  152 (329)
T ss_pred             HHHHH
Confidence            99973

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=99.93  E-value=5.3e-25  Score=182.73  Aligned_cols=154  Identities=74%  Similarity=1.184  Sum_probs=124.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP  110 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~  110 (190)
                      ..|+|+||||+||||++|++.|+++ |++|++++|...........+.....++++..|+.+....++|+|||+|+...+
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~-G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~D~ViHlAa~~~~  197 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGR-GDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIYHLACPASP  197 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCCCccHhHhhhhccCCceEEEECccccccccCCCEEEECceeccc
Confidence            3489999999999999999999999 899999987643322222222223468889999998888899999999987665


Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhhhh
Q 029640          111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      ..+..++.+.+++|+.++.+++++|++.+.++||+||.++||.....+.+|+.|...+|..+.+.|   +.+|+.+|+
T Consensus       198 ~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Y---g~SK~~aE~  272 (436)
T PLN02166        198 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCY---DEGKRTAET  272 (436)
T ss_pred             hhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhCCCCCCCCCccccccCCCCCCCCch---HHHHHHHHH
Confidence            444556788899999999999999999888999999999999776667888866555666666778   888999986

>PLN02206 UDP-glucuronate decarboxylase

Probab=99.93  E-value=6.4e-25  Score=182.50  Aligned_cols=154  Identities=71%  Similarity=1.150  Sum_probs=124.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP  110 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~  110 (190)
                      ++|+|+||||+||||++|++.|+++ |++|++++|................+++++..|+.+..+.++|+|||+|+...+
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~-G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~ViHlAa~~~~  196 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMAR-GDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIYHLACPASP  196 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHC-cCEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEEEeeeecch
Confidence            4589999999999999999999999 899999877533322222222234578889999999888899999999987665


Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhhhh
Q 029640          111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      .....++.+.+++|+.++.+++++|++.++|+||+||..+|+.....+.+|+.|...+|..+.+.|   +.+|..+|+
T Consensus       197 ~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y---~~SK~~aE~  271 (442)
T PLN02206        197 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCY---DEGKRTAET  271 (442)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhCCCCCCCCCccccccCCCCCccchH---HHHHHHHHH
Confidence            444557788999999999999999999988999999999999776667888866555565555677   888999986

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=99.92  E-value=6.9e-24  Score=171.80  Aligned_cols=150  Identities=32%  Similarity=0.374  Sum_probs=117.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh------cCCceEEEeccccccc-----cCCc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI------GHPRFELIRHDVTEPL-----LIEV   98 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~-----~~~~   98 (190)
                      +.+|+|+||||+||||++|++.|+++ +++|++++|........+....      ...++.++.+|+.|..     +.++
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~   91 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFL-NQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV   91 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence            46799999999999999999999999 7999999886543322222111      1135788999999864     3579


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchh
Q 029640           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVL  177 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~  177 (190)
                      |+|||+|+......+..++...+++|+.++.+++++|++.++ ++||+||..+||.....+..|+     .+..+.+.| 
T Consensus        92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~-----~~~~p~~~Y-  165 (348)
T PRK15181         92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEE-----RIGRPLSPY-  165 (348)
T ss_pred             CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCC-----CCCCCCChh-
Confidence            999999997655445566778899999999999999999987 8999999999997555566666     344455677 


Q ss_pred             hhhHHHHhhhh
Q 029640          178 KDGIMKLIGEL  188 (190)
Q Consensus       178 ~~~~sK~~~E~  188 (190)
                        +.||..+|+
T Consensus       166 --~~sK~~~e~  174 (348)
T PRK15181        166 --AVTKYVNEL  174 (348)
T ss_pred             --hHHHHHHHH
Confidence              888999986

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=99.91  E-value=1e-23  Score=165.69  Aligned_cols=155  Identities=25%  Similarity=0.316  Sum_probs=121.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh--hhhhhhc-CCceEEEeccccccc-----cCCcCEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD--NLRKWIG-HPRFELIRHDVTEPL-----LIEVDQIY  102 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~--~~~~~~~-~~~~~~~~~D~~~~~-----~~~~d~vi  102 (190)
                      .+++|+||||+||||+|+++.|+++ |+.|.++.|++++...  ++.++.. ..+...+..|+.|+.     ..+||+||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~r-GY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVf   83 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSR-GYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVF   83 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhC-CCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEE
Confidence            5689999999999999999999999 9999999998877443  3544432 346899999999874     46899999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecceecCCC-----CCCCCCCCCccCCCCCCcccc
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDP-----LVHPQDESYWGNVNPIGMFSF  175 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~~~~~~-----~~~~~~e~~~~~~~~~~~~~~  175 (190)
                      |.|.+....... ...+.++..+.|+.|++++|++.+ + |+|++||+.+...+     ....++|+.|.+.+-..... 
T Consensus        84 H~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~-  161 (327)
T KOG1502|consen   84 HTASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKK-  161 (327)
T ss_pred             EeCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhH-
Confidence            999877654322 344789999999999999999998 5 99999998854422     34578999886655443322 


Q ss_pred             hhhhhHHHHhhhhc
Q 029640          176 VLKDGIMKLIGELG  189 (190)
Q Consensus       176 y~~~~~sK~~~E~~  189 (190)
                       .+|..||.++|+.
T Consensus       162 -~~Y~~sK~lAEka  174 (327)
T KOG1502|consen  162 -LWYALSKTLAEKA  174 (327)
T ss_pred             -HHHHHHHHHHHHH
Confidence             3348889999974

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=99.90  E-value=2.3e-23  Score=165.51  Aligned_cols=130  Identities=25%  Similarity=0.213  Sum_probs=107.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~~a  105 (190)
                      |+||||||+||||+++++.|+++ | +|++++|...                .+.+|+.|.+.       .++|+|||+|
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~-g-~V~~~~~~~~----------------~~~~Dl~d~~~~~~~~~~~~~D~Vih~A   62 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPL-G-NLIALDVHST----------------DYCGDFSNPEGVAETVRKIRPDVIVNAA   62 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhcc-C-CEEEeccccc----------------cccCCCCCHHHHHHHHHhcCCCEEEECC
Confidence            57999999999999999999998 5 6888877421                23468877532       2589999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHh
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      +...+..++.+++..+.+|+.++.+++++|++.+.++||+||.++|+.....+++|+     ++..|.+.|   +.+|+.
T Consensus        63 a~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy~~~~~~p~~E~-----~~~~P~~~Y---g~sK~~  134 (299)
T PRK09987         63 AHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYSTDYVFPGTGDIPWQET-----DATAPLNVY---GETKLA  134 (299)
T ss_pred             ccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEccceEECCCCCCCcCCC-----CCCCCCCHH---HHHHHH
Confidence            988776667778888999999999999999999999999999999987666678888     456666778   888999


Q ss_pred             hhh
Q 029640          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      +|+
T Consensus       135 ~E~  137 (299)
T PRK09987        135 GEK  137 (299)
T ss_pred             HHH
Confidence            997

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=99.90  E-value=3.6e-23  Score=157.75  Aligned_cols=155  Identities=77%  Similarity=1.202  Sum_probs=142.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      ..+++|+||||+||||++|++.|+.+ |++|++++....+....+..+.....++.+..|+..+.+..+|.|+|+|++..
T Consensus        25 ~~~lrI~itGgaGFIgSHLvdkLm~e-gh~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~pl~~evD~IyhLAapas  103 (350)
T KOG1429|consen   25 SQNLRILITGGAGFIGSHLVDKLMTE-GHEVIALDNYFTGRKENLEHWIGHPNFELIRHDVVEPLLKEVDQIYHLAAPAS  103 (350)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHhc-CCeEEEEecccccchhhcchhccCcceeEEEeechhHHHHHhhhhhhhccCCC
Confidence            36699999999999999999999999 79999999988877777777888889999999999999999999999999998


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhhhh
Q 029640          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      +.....++-+++..|..++.+.+..|++.+.|+++.||+.|||.+..++..|++|....|..+...|   +.-|..+|-
T Consensus       104 p~~y~~npvktIktN~igtln~lglakrv~aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cy---degKr~aE~  179 (350)
T KOG1429|consen  104 PPHYKYNPVKTIKTNVIGTLNMLGLAKRVGARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCY---DEGKRVAET  179 (350)
T ss_pred             CcccccCccceeeecchhhHHHHHHHHHhCceEEEeecccccCCcccCCCccccccccCcCCchhhh---hHHHHHHHH
Confidence            8877888999999999999999999999999999999999999999999999999999999988888   555988873

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=99.89  E-value=3.1e-22  Score=161.98  Aligned_cols=150  Identities=26%  Similarity=0.350  Sum_probs=113.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccc-ccc-----cCCcCEEEEcc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-EPL-----LIEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~-----~~~~d~vi~~a  105 (190)
                      ||+|+||||+||||++|++.|++.++++|+++.|+...    ...+.....+.++.+|+. +..     ..++|+|||+|
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~a   76 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDR----LGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLV   76 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHH----HHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECc
Confidence            47899999999999999999998746899999875422    222222346899999997 432     24799999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccC-CCCC-CcccchhhhhHHH
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-VNPI-GMFSFVLKDGIMK  183 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~-~~~~-~~~~~y~~~~~sK  183 (190)
                      +...+.....++...+++|+.++.+++++|++.+.++||+||..+||.....+++|+..+. ..+. .+.+.|   +.+|
T Consensus        77 a~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y---~~sK  153 (347)
T PRK11908         77 AIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIY---ACSK  153 (347)
T ss_pred             ccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeeccCCCcCcCccccccccCcCCCccchH---HHHH
Confidence            8766544556788889999999999999999887899999999999975555667664211 1121 234567   8889


Q ss_pred             Hhhhh
Q 029640          184 LIGEL  188 (190)
Q Consensus       184 ~~~E~  188 (190)
                      ..+|+
T Consensus       154 ~~~e~  158 (347)
T PRK11908        154 QLMDR  158 (347)
T ss_pred             HHHHH
Confidence            99885

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=99.89  E-value=2.8e-22  Score=162.00  Aligned_cols=147  Identities=27%  Similarity=0.272  Sum_probs=112.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhhc------CCceEEEecccccccc-----C--Cc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG------HPRFELIRHDVTEPLL-----I--EV   98 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~~------~~~~~~~~~D~~~~~~-----~--~~   98 (190)
                      |+|+||||+||||+++++.|++. |++|++++|+.... ...+..+..      ...+.++.+|+.|...     .  ++
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~   79 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEK-GYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKP   79 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHC-CCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCC
Confidence            58999999999999999999999 89999998875421 111222110      2358899999998642     2  47


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC----eEEEEecceecCCCCCCCCCCCCccCCCCCCccc
Q 029640           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS  174 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~  174 (190)
                      |+|||+|+......+...+...+++|+.++.+++++|++.++    ++||+||..+||.....+++|+     .+..+.+
T Consensus        80 d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~  154 (343)
T TIGR01472        80 TEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNET-----TPFYPRS  154 (343)
T ss_pred             CEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCC-----CCCCCCC
Confidence            999999997654434445667788999999999999998763    7999999999997655567777     4556667


Q ss_pred             chhhhhHHHHhhhh
Q 029640          175 FVLKDGIMKLIGEL  188 (190)
Q Consensus       175 ~y~~~~~sK~~~E~  188 (190)
                      .|   +.||..+|.
T Consensus       155 ~Y---~~sK~~~e~  165 (343)
T TIGR01472       155 PY---AAAKLYAHW  165 (343)
T ss_pred             hh---HHHHHHHHH
Confidence            78   888999985

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=99.89  E-value=4.2e-22  Score=156.75  Aligned_cols=143  Identities=36%  Similarity=0.449  Sum_probs=105.5

Q ss_pred             EEEcccchHHHHHHHHHHhcCC--CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCCC
Q 029640           36 LVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACPA  108 (190)
Q Consensus        36 lItG~~G~iG~~l~~~L~~~~~--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~~  108 (190)
                      |||||+||||+++++.|+++ +  ++|.++++.......  ..........++++|++|..     +.++|+|||+|++.
T Consensus         1 LVTGgsGflG~~iv~~Ll~~-g~~~~Vr~~d~~~~~~~~--~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~   77 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLER-GYIYEVRVLDRSPPPKFL--KDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPV   77 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHC-CCceEEEEcccccccccc--hhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccc
Confidence            69999999999999999999 6  788888876543321  11122233448999999863     56899999999876


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCC-CCCC---CCCCccCCCCCCcccchhhhhHHH
Q 029640          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL-VHPQ---DESYWGNVNPIGMFSFVLKDGIMK  183 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~-~~~~---~e~~~~~~~~~~~~~~y~~~~~sK  183 (190)
                      ... .....+..+++|+.||.+++++|++.++ |+||+||.++++.+. ..++   +|..+   .+......|   +.||
T Consensus        78 ~~~-~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~---~~~~~~~~Y---~~SK  150 (280)
T PF01073_consen   78 PPW-GDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTP---YPSSPLDPY---AESK  150 (280)
T ss_pred             ccc-CcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCc---ccccccCch---HHHH
Confidence            543 2456778999999999999999999998 899999999888622 2222   44422   222233456   8889


Q ss_pred             Hhhhh
Q 029640          184 LIGEL  188 (190)
Q Consensus       184 ~~~E~  188 (190)
                      +.+|+
T Consensus       151 ~~AE~  155 (280)
T PF01073_consen  151 ALAEK  155 (280)
T ss_pred             HHHHH
Confidence            99997

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.88  E-value=6.2e-22  Score=172.26  Aligned_cols=156  Identities=28%  Similarity=0.422  Sum_probs=119.5

Q ss_pred             hcccccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------cCCc
Q 029640           25 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEV   98 (190)
Q Consensus        25 ~~~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~~   98 (190)
                      ++.++ .+|+|+||||+||||++|++.|+++++++|++++|......    ......+++++.+|++|..      +.++
T Consensus       309 ~~~~~-~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~----~~~~~~~~~~~~gDl~d~~~~l~~~l~~~  383 (660)
T PRK08125        309 ACSAK-RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAIS----RFLGHPRFHFVEGDISIHSEWIEYHIKKC  383 (660)
T ss_pred             hhhhh-cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhh----hhcCCCceEEEeccccCcHHHHHHHhcCC
Confidence            44443 67899999999999999999999865799999998653321    1222346889999998742      3479


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccC-CCCC-Ccccch
Q 029640           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-VNPI-GMFSFV  176 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~-~~~~-~~~~~y  176 (190)
                      |+|||+|+...+..+..++...+++|+.++.+++++|++.+.++||+||.++||.....+++|+.+.. ..+. .+.+.|
T Consensus       384 D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Y  463 (660)
T PRK08125        384 DVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIY  463 (660)
T ss_pred             CEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccch
Confidence            99999999776544556677889999999999999999988899999999999976555678875321 1222 234567


Q ss_pred             hhhhHHHHhhhh
Q 029640          177 LKDGIMKLIGEL  188 (190)
Q Consensus       177 ~~~~~sK~~~E~  188 (190)
                         +.||+.+|+
T Consensus       464 ---g~sK~~~E~  472 (660)
T PRK08125        464 ---SVSKQLLDR  472 (660)
T ss_pred             ---HHHHHHHHH
Confidence               888999986

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=99.88  E-value=8.5e-23  Score=161.29  Aligned_cols=127  Identities=33%  Similarity=0.411  Sum_probs=98.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-------cCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-------~~~~d~vi~~a  105 (190)
                      |||+|+|++|+||+++.+.|.++ +++|+.+.|.                    ..|+.|..       ..++|+|||||
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~~r~--------------------~~dl~d~~~~~~~~~~~~pd~Vin~a   59 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKER-GYEVIATSRS--------------------DLDLTDPEAVAKLLEAFKPDVVINCA   59 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTT-SEEEEEESTT--------------------CS-TTSHHHHHHHHHHH--SEEEE--
T ss_pred             CEEEEECCCCHHHHHHHHHHhhC-CCEEEEeCch--------------------hcCCCCHHHHHHHHHHhCCCeEeccc
Confidence            78999999999999999999997 7899998774                    34555542       23699999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHh
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      |...+..++.+++..+.+|+.++.+|+++|+..+.++||+||.+||+.....+++|+     ++..|.+.|   |.+|+.
T Consensus        60 a~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~~~~~y~E~-----d~~~P~~~Y---G~~K~~  131 (286)
T PF04321_consen   60 AYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGDKGGPYTED-----DPPNPLNVY---GRSKLE  131 (286)
T ss_dssp             ----HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SSTSSSB-TT-----S----SSHH---HHHHHH
T ss_pred             eeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCCcccccccC-----CCCCCCCHH---HHHHHH
Confidence            998888899999999999999999999999999999999999999988777789998     566777888   888999


Q ss_pred             hhh
Q 029640          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      +|+
T Consensus       132 ~E~  134 (286)
T PF04321_consen  132 GEQ  134 (286)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            996

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=99.88  E-value=1.3e-21  Score=158.43  Aligned_cols=150  Identities=25%  Similarity=0.282  Sum_probs=114.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIY  102 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi  102 (190)
                      +++|+|+||||+||||+++++.|+++ |++|++++|+..........+....++.++.+|+.+...       .++|+||
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi   80 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLEL-GAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVF   80 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHC-CCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence            46799999999999999999999999 899999988765443222222112357788899998642       2579999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecceecCCCC-CCCCCCCCccCCCCCCcccchhhh
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPL-VHPQDESYWGNVNPIGMFSFVLKD  179 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~~~~~~~-~~~~~e~~~~~~~~~~~~~~y~~~  179 (190)
                      |+||......+..++...+++|+.++.+++++++..+ . ++|++||..+|+... ..+++|+     .+..+.+.|   
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~-----~~~~p~~~Y---  152 (349)
T TIGR02622        81 HLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRET-----DPLGGHDPY---  152 (349)
T ss_pred             ECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccC-----CCCCCCCcc---
Confidence            9999655444556778899999999999999998876 4 899999999998643 2346666     345555677   


Q ss_pred             hHHHHhhhh
Q 029640          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      +.+|..+|.
T Consensus       153 ~~sK~~~e~  161 (349)
T TIGR02622       153 SSSKACAEL  161 (349)
T ss_pred             hhHHHHHHH
Confidence            888998875

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=99.88  E-value=4.9e-22  Score=153.94  Aligned_cols=126  Identities=29%  Similarity=0.347  Sum_probs=111.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~~a  105 (190)
                      |+++|||++|.+|.+|.+.|. . +.+|+.+.|..                    +|++|.+.       .++|+|||+|
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~-~~~v~a~~~~~--------------------~Ditd~~~v~~~i~~~~PDvVIn~A   58 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-G-EFEVIATDRAE--------------------LDITDPDAVLEVIRETRPDVVINAA   58 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-C-CceEEeccCcc--------------------ccccChHHHHHHHHhhCCCEEEECc
Confidence            459999999999999999998 3 68898887732                    56666542       3699999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHh
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      +.+.++.++..++..|.+|..++.+++++|++.+.++||+||.+||....+.+|.|+     ++..|.+.|   |.||++
T Consensus        59 Ayt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~-----D~~~P~nvY---G~sKl~  130 (281)
T COG1091          59 AYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKET-----DTPNPLNVY---GRSKLA  130 (281)
T ss_pred             cccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCC-----CCCCChhhh---hHHHHH
Confidence            999999999999999999999999999999999999999999999998888899999     677777888   999999


Q ss_pred             hhh
Q 029640          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      +|+
T Consensus       131 GE~  133 (281)
T COG1091         131 GEE  133 (281)
T ss_pred             HHH
Confidence            996

>PLN02427 UDP-apiose/xylose synthase

Probab=99.88  E-value=1.5e-21  Score=160.22  Aligned_cols=132  Identities=28%  Similarity=0.395  Sum_probs=98.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh--hcCCceEEEeccccccc-----cCCcCEEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~-----~~~~d~vi~  103 (190)
                      +.|+|+||||+||||++|++.|+++++++|++++|+...........  ....+++++.+|+.|..     +.++|+|||
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViH   92 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTIN   92 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEE
Confidence            45889999999999999999999985589999987643322111100  00136899999999864     346999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCC
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDES  162 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~  162 (190)
                      +|+...+.....++.+.+..|+.++.+++++|++.+.|+||+||.++||.....+++|+
T Consensus        93 lAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg~~~~~~~~e~  151 (386)
T PLN02427         93 LAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKD  151 (386)
T ss_pred             cccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeCCCcCCCCCcc
Confidence            99876543333455667789999999999999887779999999999997544344443

>PLN02240 UDP-glucose 4-epimerase

Probab=99.87  E-value=2.7e-21  Score=156.54  Aligned_cols=150  Identities=29%  Similarity=0.427  Sum_probs=115.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh---hhhhhhc--CCceEEEecccccccc-------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLRKWIG--HPRFELIRHDVTEPLL-------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~---~~~~~~~--~~~~~~~~~D~~~~~~-------~~   97 (190)
                      +++++|+||||+|+||+++++.|+++ +++|++++|.......   .+.....  ..++.++.+|+.+...       .+
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~   81 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLA-GYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR   81 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence            46789999999999999999999999 7899998875432221   1221111  2367889999998642       26


Q ss_pred             cCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccch
Q 029640           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFV  176 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y  176 (190)
                      +|+|||+|+..........+...+++|+.++.+++++|++.++ ++|++||+++|+.....+++|+     .+..+...|
T Consensus        82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~-----~~~~~~~~Y  156 (352)
T PLN02240         82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEE-----FPLSATNPY  156 (352)
T ss_pred             CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC-----CCCCCCCHH
Confidence            8999999986543333456778899999999999999998886 8999999999987666678887     455555667


Q ss_pred             hhhhHHHHhhhh
Q 029640          177 LKDGIMKLIGEL  188 (190)
Q Consensus       177 ~~~~~sK~~~E~  188 (190)
                         +.||+.+|+
T Consensus       157 ---~~sK~~~e~  165 (352)
T PLN02240        157 ---GRTKLFIEE  165 (352)
T ss_pred             ---HHHHHHHHH
Confidence               888999986

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=99.87  E-value=1.8e-21  Score=157.08  Aligned_cols=148  Identities=23%  Similarity=0.272  Sum_probs=114.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhh-----cCCceEEEeccccccccC-------C
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWI-----GHPRFELIRHDVTEPLLI-------E   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~-----~~~~~~~~~~D~~~~~~~-------~   97 (190)
                      ++++|+||||+||||+++++.|+++ |++|+++.|+.... ...+..+.     ...++.++.+|+.|....       +
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   83 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSK-GYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK   83 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHC-CCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence            6789999999999999999999999 89999988764321 11222211     123588999999986421       4


Q ss_pred             cCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC------eEEEEecceecCCCCCCCCCCCCccCCCCCC
Q 029640           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA------RILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~  171 (190)
                      +|+|||+|+......+..++...+++|+.++.+++++|.+.++      ++|++||..+||.... +++|+     .+..
T Consensus        84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~-----~~~~  157 (340)
T PLN02653         84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSET-----TPFH  157 (340)
T ss_pred             CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCC-----CCCC
Confidence            7999999997654444456677889999999999999988763      7999999999997654 67777     4566


Q ss_pred             cccchhhhhHHHHhhhh
Q 029640          172 MFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       172 ~~~~y~~~~~sK~~~E~  188 (190)
                      +.+.|   +.||..+|+
T Consensus       158 p~~~Y---~~sK~~~e~  171 (340)
T PLN02653        158 PRSPY---AVAKVAAHW  171 (340)
T ss_pred             CCChh---HHHHHHHHH
Confidence            66778   888999986

>PLN02214 cinnamoyl-CoA reductase

Probab=99.87  E-value=4.3e-21  Score=155.16  Aligned_cols=150  Identities=25%  Similarity=0.382  Sum_probs=112.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh-hhhhhhc-CCceEEEeccccccc-----cCCcCEEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-NLRKWIG-HPRFELIRHDVTEPL-----LIEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~-~~~~~~~-~~~~~~~~~D~~~~~-----~~~~d~vi~  103 (190)
                      ++++|+||||+||||+++++.|+++ |++|.++.|+...... .+..+.. ..++.++.+|+.+..     +.++|+|||
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih   87 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLER-GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH   87 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence            6789999999999999999999999 8999999886543221 1222211 235788899999864     346999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecc-eecCCCCC---CCCCCCCccCCC-CCCcccchh
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS-EVYGDPLV---HPQDESYWGNVN-PIGMFSFVL  177 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~-~~~~~~~~---~~~~e~~~~~~~-~~~~~~~y~  177 (190)
                      +|+...     .++...+++|+.++.+++++|++.++ |+|++||. .+|+....   .+++|+.|.+.. +..+.+.| 
T Consensus        88 ~A~~~~-----~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y-  161 (342)
T PLN02214         88 TASPVT-----DDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWY-  161 (342)
T ss_pred             ecCCCC-----CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHH-
Confidence            998642     35678899999999999999999887 89999996 58875332   357888764332 33344567 


Q ss_pred             hhhHHHHhhhhc
Q 029640          178 KDGIMKLIGELG  189 (190)
Q Consensus       178 ~~~~sK~~~E~~  189 (190)
                        +.||+.+|+.
T Consensus       162 --~~sK~~aE~~  171 (342)
T PLN02214        162 --CYGKMVAEQA  171 (342)
T ss_pred             --HHHHHHHHHH
Confidence              8889999863

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.87  E-value=2e-21  Score=149.28  Aligned_cols=148  Identities=32%  Similarity=0.483  Sum_probs=121.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCC-CCChhhhhhhhcCCceEEEeccccccccC-------CcCEEEE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-------~~d~vi~  103 (190)
                      |++|||||.||||+.+++.++++.. .+|+++++-- ......+..+.+.+...++++|+.|.++.       ++|+|+|
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            5799999999999999999999843 4466665421 12234455566678999999999997542       5999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEecceecCCCCCC--CCCCCCccCCCCCCcccchhhh
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVH--PQDESYWGNVNPIGMFSFVLKD  179 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS~~~~~~~~~~--~~~e~~~~~~~~~~~~~~y~~~  179 (190)
                      +|+-..++.+..+|..++++|+.||.+|++++++...  |+++|||..|||.-...  .++|.     +|+.|.++|   
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~-----tp~~PsSPY---  152 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTET-----TPYNPSSPY---  152 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccC-----CCCCCCCCc---
Confidence            9999888889999999999999999999999999884  99999999999975442  57787     799999999   


Q ss_pred             hHHHHhhhh
Q 029640          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      .+||+.+++
T Consensus       153 SASKAasD~  161 (340)
T COG1088         153 SASKAASDL  161 (340)
T ss_pred             chhhhhHHH
Confidence            777988754

>PLN02572 UDP-sulfoquinovose synthase

Probab=99.86  E-value=8.1e-21  Score=158.20  Aligned_cols=154  Identities=27%  Similarity=0.351  Sum_probs=107.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh----------------hhhhhhh--cCCceEEEecccc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------DNLRKWI--GHPRFELIRHDVT   91 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~----------------~~~~~~~--~~~~~~~~~~D~~   91 (190)
                      .++|+|+||||+||||++|++.|+++ |++|++++|......                ..+..+.  ...+++++.+|+.
T Consensus        45 ~~~k~VLVTGatGfIGs~Lv~~L~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~  123 (442)
T PLN02572         45 SKKKKVMVIGGDGYCGWATALHLSKR-GYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDIC  123 (442)
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHHC-CCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCC
Confidence            47899999999999999999999999 899999764321110                1111111  1236889999999


Q ss_pred             cccc-------CCcCEEEEccCCCCCcccccC---chhHHHHHHHHHHHHHHHHHHcCC--eEEEEecceecCCCCCCCC
Q 029640           92 EPLL-------IEVDQIYHLACPASPIFYKYN---PVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQ  159 (190)
Q Consensus        92 ~~~~-------~~~d~vi~~ag~~~~~~~~~~---~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS~~~~~~~~~~~~  159 (190)
                      |...       .++|+|||+|+......+..+   .+..+++|+.++.+++++|++.++  ++|++||..+||... .++
T Consensus       124 d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~-~~~  202 (442)
T PLN02572        124 DFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN-IDI  202 (442)
T ss_pred             CHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC-CCC
Confidence            8642       258999999976544333323   245678999999999999998874  799999999999643 233


Q ss_pred             CCCCcc---------CCCCCCcccchhhhhHHHHhhhh
Q 029640          160 DESYWG---------NVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       160 ~e~~~~---------~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      +|...+         ...+..+.+.|   +.||+.+|.
T Consensus       203 ~E~~i~~~~~~~e~~~~~~~~P~s~Y---g~SK~a~E~  237 (442)
T PLN02572        203 EEGYITITHNGRTDTLPYPKQASSFY---HLSKVHDSH  237 (442)
T ss_pred             cccccccccccccccccCCCCCCCcc---hhHHHHHHH
Confidence            433110         01244555678   888999885

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=99.86  E-value=8.1e-21  Score=154.08  Aligned_cols=154  Identities=25%  Similarity=0.245  Sum_probs=109.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~a  105 (190)
                      .+|+|+||||+||||+++++.|+++ |++|+++.|+..........+.....+.++.+|+.+..     +.++|+|||+|
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A   87 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQR-GYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA   87 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence            5689999999999999999999999 88999988865433332222222346888999999864     34699999999


Q ss_pred             CCCCCcc--cccCchhH-----HHHHHHHHHHHHHHHHHcC-C-eEEEEecceecCCCC-----CCCCCCCCccCCC---
Q 029640          106 CPASPIF--YKYNPVKT-----IKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPL-----VHPQDESYWGNVN---  168 (190)
Q Consensus       106 g~~~~~~--~~~~~~~~-----~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~~~~~~~-----~~~~~e~~~~~~~---  168 (190)
                      +......  ...+++..     ++.|+.++.+++++|++.+ + ++|++||.++|+...     ..+++|+.+.+.+   
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~~~  167 (353)
T PLN02896         88 ASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHVW  167 (353)
T ss_pred             ccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHHHhh
Confidence            9765432  22334433     4555699999999998875 5 899999999998532     1356776432221   


Q ss_pred             -CCCcccchhhhhHHHHhhhh
Q 029640          169 -PIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       169 -~~~~~~~y~~~~~sK~~~E~  188 (190)
                       +..+...|   +.||+.+|+
T Consensus       168 ~~~~~~~~Y---~~sK~~~E~  185 (353)
T PLN02896        168 NTKASGWVY---VLSKLLTEE  185 (353)
T ss_pred             ccCCCCccH---HHHHHHHHH
Confidence             12233467   889999996

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=99.86  E-value=3.5e-21  Score=149.70  Aligned_cols=148  Identities=29%  Similarity=0.402  Sum_probs=124.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh---h-cCCceEEEeccccccccC-------CcCE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---I-GHPRFELIRHDVTEPLLI-------EVDQ  100 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~~~D~~~~~~~-------~~d~  100 (190)
                      .++|+||||.||||++.+-.|+++ |+.|++++.-.......+...   . ...++.+.++|++|..+.       ++|.
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~-gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~   80 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKR-GYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDA   80 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhC-CCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCce
Confidence            478999999999999999999999 899999876554443333322   1 136899999999997543       5999


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCC-cccchhh
Q 029640          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG-MFSFVLK  178 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~-~~~~y~~  178 (190)
                      |+|+|+.-....+.+++..++..|+.++.++++.++++++ .+||.||+.+||.+...|++|+.     +.. +.+.|  
T Consensus        81 V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~~-----~t~~p~~py--  153 (343)
T KOG1371|consen   81 VMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEED-----PTDQPTNPY--  153 (343)
T ss_pred             EEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCcC-----CCCCCCCcc--
Confidence            9999998888888888999999999999999999999997 89999999999999999999994     443 66778  


Q ss_pred             hhHHHHhhhh
Q 029640          179 DGIMKLIGEL  188 (190)
Q Consensus       179 ~~~sK~~~E~  188 (190)
                       |.+|...|.
T Consensus       154 -g~tK~~iE~  162 (343)
T KOG1371|consen  154 -GKTKKAIEE  162 (343)
T ss_pred             -hhhhHHHHH
Confidence             777998875

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=99.86  E-value=1.6e-20  Score=152.21  Aligned_cols=148  Identities=31%  Similarity=0.381  Sum_probs=107.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCe-EEEEcCCCCCCh-hhhhhhhcCCceEEEecccccccc-----C--CcCEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNE-VIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIY  102 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~-v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~-----~--~~d~vi  102 (190)
                      |++|+||||+||||+++++.|+++ +++ +.+++|...... ..+..+....++.++.+|+.|...     .  ++|+||
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi   79 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINE-TSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM   79 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHc-CCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence            478999999999999999999999 655 445554322111 111111122367888999998642     1  489999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc---------CC-eEEEEecceecCCCC--CCCCCCCCccCCCCC
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---------GA-RILLTSTSEVYGDPL--VHPQDESYWGNVNPI  170 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~-~~i~vSS~~~~~~~~--~~~~~e~~~~~~~~~  170 (190)
                      |+||......+...+..++++|+.++.+++++|.+.         ++ ++|++||.++|+...  ..+++|+     .+.
T Consensus        80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~-----~~~  154 (355)
T PRK10217         80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTET-----TPY  154 (355)
T ss_pred             ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCC-----CCC
Confidence            999976544344567789999999999999999762         34 899999999999542  3357776     455


Q ss_pred             CcccchhhhhHHHHhhhh
Q 029640          171 GMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       171 ~~~~~y~~~~~sK~~~E~  188 (190)
                      .+.+.|   +.||+.+|.
T Consensus       155 ~p~s~Y---~~sK~~~e~  169 (355)
T PRK10217        155 APSSPY---SASKASSDH  169 (355)
T ss_pred             CCCChh---HHHHHHHHH
Confidence            556677   888999875

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.85  E-value=2.9e-20  Score=149.91  Aligned_cols=152  Identities=22%  Similarity=0.252  Sum_probs=108.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh--hhhhhcCCceEEEecccccccc-----CCcCEEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN--LRKWIGHPRFELIRHDVTEPLL-----IEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~--~~~~~~~~~~~~~~~D~~~~~~-----~~~d~vi~  103 (190)
                      .+++|+||||+||||+++++.|+++ |++|+++.|+.......  +..+.....+.++.+|+.|...     .++|+|||
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   86 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQK-GYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH   86 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence            5689999999999999999999999 88998887764332211  1111111357889999998642     46999999


Q ss_pred             ccCCCCCcccccCc-hhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecceecCCCC----CCCCCCCCccCC----CCCCc
Q 029640          104 LACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDPL----VHPQDESYWGNV----NPIGM  172 (190)
Q Consensus       104 ~ag~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~~~~~~~~----~~~~~e~~~~~~----~~~~~  172 (190)
                      +|+....  ...++ ...+++|+.++.++++++.+. ++ ++||+||..+|+...    ..+++|+.|...    .+..+
T Consensus        87 ~A~~~~~--~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p  164 (338)
T PLN00198         87 VATPVNF--ASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPP  164 (338)
T ss_pred             eCCCCcc--CCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCc
Confidence            9985421  12233 346799999999999999876 45 999999999998532    345677654321    12334


Q ss_pred             ccchhhhhHHHHhhhh
Q 029640          173 FSFVLKDGIMKLIGEL  188 (190)
Q Consensus       173 ~~~y~~~~~sK~~~E~  188 (190)
                      .+.|   +.||+.+|+
T Consensus       165 ~~~Y---~~sK~~~E~  177 (338)
T PLN00198        165 TWGY---PASKTLAEK  177 (338)
T ss_pred             cchh---HHHHHHHHH
Confidence            5567   888999986

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=99.85  E-value=2.5e-20  Score=150.06  Aligned_cols=147  Identities=30%  Similarity=0.457  Sum_probs=110.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc-------CCcCEEEE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL-------IEVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~-------~~~d~vi~  103 (190)
                      |+|+||||+||||+++++.|+++ |++|++++|...........+.  ...++.++.+|+.|...       .++|+|||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh   79 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIH   79 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHC-CCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEE
Confidence            57999999999999999999999 8899988764333222221111  12356778899988642       25899999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCC-CcccchhhhhH
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI-GMFSFVLKDGI  181 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~-~~~~~y~~~~~  181 (190)
                      +|+..........+.+.+++|+.++.+++++|++.++ ++|++||+++|+.....+++|+.     +. .+...|   +.
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~~-----~~~~p~~~Y---~~  151 (338)
T PRK10675         80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVESF-----PTGTPQSPY---GK  151 (338)
T ss_pred             CCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCcccccc-----CCCCCCChh---HH
Confidence            9986543333345667899999999999999999887 89999999999976556778873     33 344566   88


Q ss_pred             HHHhhhh
Q 029640          182 MKLIGEL  188 (190)
Q Consensus       182 sK~~~E~  188 (190)
                      +|..+|+
T Consensus       152 sK~~~E~  158 (338)
T PRK10675        152 SKLMVEQ  158 (338)
T ss_pred             HHHHHHH
Confidence            8999885

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=99.85  E-value=1.6e-20  Score=143.62  Aligned_cols=141  Identities=36%  Similarity=0.501  Sum_probs=113.3

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccC-------CcCEEEEccCC
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACP  107 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-------~~d~vi~~ag~  107 (190)
                      |+||||+||||+++++.|+++ ++.|+.+.|+..........    ..+.++.+|+.+....       ++|+|||+|+.
T Consensus         1 IlI~GatG~iG~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~----~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~   75 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKK-GHEVIVLSRSSNSESFEEKK----LNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAF   75 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TTEEEEEESCSTGGHHHHHH----TTEEEEESETTSHHHHHHHHHHHTESEEEEEBSS
T ss_pred             EEEEccCCHHHHHHHHHHHHc-CCcccccccccccccccccc----ceEEEEEeeccccccccccccccCceEEEEeecc
Confidence            799999999999999999999 88888888865544332221    1789999999986432       57999999987


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhh
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIG  186 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~  186 (190)
                      .............++.|+.++.+++++|++.++ ++|++||+.+|+.....+++|+     .+..+.+.|   +.+|...
T Consensus        76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~-----~~~~~~~~Y---~~~K~~~  147 (236)
T PF01370_consen   76 SSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDED-----SPINPLSPY---GASKRAA  147 (236)
T ss_dssp             SSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETT-----SGCCHSSHH---HHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccc---ccccccc
Confidence            542223356778899999999999999999998 9999999999998877788888     444555667   8889998


Q ss_pred             hh
Q 029640          187 EL  188 (190)
Q Consensus       187 E~  188 (190)
                      |+
T Consensus       148 e~  149 (236)
T PF01370_consen  148 EE  149 (236)
T ss_dssp             HH
T ss_pred             cc
Confidence            85

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=99.84  E-value=3.5e-20  Score=150.11  Aligned_cols=148  Identities=31%  Similarity=0.392  Sum_probs=105.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC-CChhhhhhhhcCCceEEEecccccccc-------CCcCEEEEc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHL  104 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~~  104 (190)
                      |+|+||||+||||+++++.|++++...|+++++... .....+..+.....+.++.+|+.|.+.       .++|+|||+
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   80 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMHL   80 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEEC
Confidence            579999999999999999999993344655554321 111222222223457888999998642       258999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc---------CC-eEEEEecceecCCCCC----------CCCCCCCc
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---------GA-RILLTSTSEVYGDPLV----------HPQDESYW  164 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~-~~i~vSS~~~~~~~~~----------~~~~e~~~  164 (190)
                      ||..........++.++++|+.++.+++++|++.         ++ ++|++||.++|+....          .+++|+  
T Consensus        81 A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~--  158 (352)
T PRK10084         81 AAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTET--  158 (352)
T ss_pred             CcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCcccc--
Confidence            9876543334567789999999999999999874         34 8999999999985311          134555  


Q ss_pred             cCCCCCCcccchhhhhHHHHhhhh
Q 029640          165 GNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       165 ~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                         .+..+.+.|   +.||+.+|+
T Consensus       159 ---~~~~p~~~Y---~~sK~~~E~  176 (352)
T PRK10084        159 ---TAYAPSSPY---SASKASSDH  176 (352)
T ss_pred             ---CCCCCCChh---HHHHHHHHH
Confidence               455666677   888999885

>PLN02778 3,5-epimerase/4-reductase

Probab=99.84  E-value=8.4e-20  Score=145.05  Aligned_cols=134  Identities=19%  Similarity=0.238  Sum_probs=97.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP  110 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~  110 (190)
                      ..|+|+||||+||||++|++.|+++ |++|+...++... ...            +..|+.   ..++|+|||+||....
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~-g~~V~~~~~~~~~-~~~------------v~~~l~---~~~~D~ViH~Aa~~~~   70 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQ-GIDFHYGSGRLEN-RAS------------LEADID---AVKPTHVFNAAGVTGR   70 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhC-CCEEEEecCccCC-HHH------------HHHHHH---hcCCCEEEECCcccCC
Confidence            3478999999999999999999999 7888754322111 111            112222   1368999999997653


Q ss_pred             c---ccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCC------CCCCCCCCccCCCCCCcccchhhhhH
Q 029640          111 I---FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL------VHPQDESYWGNVNPIGMFSFVLKDGI  181 (190)
Q Consensus       111 ~---~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~------~~~~~e~~~~~~~~~~~~~~y~~~~~  181 (190)
                      .   +++.++.+.+++|+.++.+++++|++.+++++++||.++|+...      ..+++|++    .+..+.+.|   +.
T Consensus        71 ~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~----~p~~~~s~Y---g~  143 (298)
T PLN02778         71 PNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNYATGCIFEYDDAHPLGSGIGFKEED----TPNFTGSFY---SK  143 (298)
T ss_pred             CCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecceEeCCCCCCCcccCCCCCcCC----CCCCCCCch---HH
Confidence            2   34567888999999999999999999998888899989887532      22466664    233334678   88


Q ss_pred             HHHhhhh
Q 029640          182 MKLIGEL  188 (190)
Q Consensus       182 sK~~~E~  188 (190)
                      +|+.+|+
T Consensus       144 sK~~~E~  150 (298)
T PLN02778        144 TKAMVEE  150 (298)
T ss_pred             HHHHHHH
Confidence            8999996

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=99.84  E-value=1.2e-19  Score=145.49  Aligned_cols=153  Identities=22%  Similarity=0.299  Sum_probs=109.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---c-CCceEEEeccccccc-----cCCcCEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---G-HPRFELIRHDVTEPL-----LIEVDQI  101 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~-~~~~~~~~~D~~~~~-----~~~~d~v  101 (190)
                      .+|+++||||+||||+++++.|+++ |++|+++.|+....... ..+.   . ..+++++.+|+++..     +.++|+|
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   81 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFR-GYTINATVRDPKDRKKT-DHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV   81 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEEcCCcchhhH-HHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence            4689999999999999999999999 88998887765443221 1111   1 246889999999875     2469999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecceecCCC-----CCCCCCCCCccCCCC-CCcc
Q 029640          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDP-----LVHPQDESYWGNVNP-IGMF  173 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~~~~~~~-----~~~~~~e~~~~~~~~-~~~~  173 (190)
                      ||+||........+.+.+.+++|+.++.+++++|.+. +. ++|++||..+|+.+     ...+++|+.+..... ..+.
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~  161 (325)
T PLN02989         82 FHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERK  161 (325)
T ss_pred             EEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhcccc
Confidence            9999965433333455678999999999999999875 34 89999998876542     233577775322111 1123


Q ss_pred             cchhhhhHHHHhhhh
Q 029640          174 SFVLKDGIMKLIGEL  188 (190)
Q Consensus       174 ~~y~~~~~sK~~~E~  188 (190)
                      +.|   +.||+.+|+
T Consensus       162 ~~Y---~~sK~~~E~  173 (325)
T PLN02989        162 QWY---VLSKTLAED  173 (325)
T ss_pred             cch---HHHHHHHHH
Confidence            456   888999985

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=99.83  E-value=1.9e-19  Score=144.29  Aligned_cols=152  Identities=23%  Similarity=0.345  Sum_probs=108.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh----cCCceEEEeccccccc-----cCCcCEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----GHPRFELIRHDVTEPL-----LIEVDQI  101 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~-----~~~~d~v  101 (190)
                      ++++|+||||+||||+++++.|+++ |++|+++.|+...... ...+.    ...++.++.+|+.+..     +.++|+|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v   81 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLR-GYTVKATVRDLTDRKK-TEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAV   81 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCCcchHH-HHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEE
Confidence            5789999999999999999999999 8899988886554321 11111    1246889999999875     3469999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecceec--CCC---CCCCCCCCCccCCC-CCCcc
Q 029640          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVY--GDP---LVHPQDESYWGNVN-PIGMF  173 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~~~~--~~~---~~~~~~e~~~~~~~-~~~~~  173 (190)
                      ||+|+..... ..+.....+++|+.++.+++++|++. ++ |+|++||.++|  +..   ...+++|+.|.... +..+.
T Consensus        82 ih~A~~~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~  160 (322)
T PLN02986         82 FHTASPVFFT-VKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETK  160 (322)
T ss_pred             EEeCCCcCCC-CCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhccc
Confidence            9999865322 12223457899999999999999886 55 89999998754  432   23457787653221 11233


Q ss_pred             cchhhhhHHHHhhhh
Q 029640          174 SFVLKDGIMKLIGEL  188 (190)
Q Consensus       174 ~~y~~~~~sK~~~E~  188 (190)
                      +.|   +.||..+|+
T Consensus       161 ~~Y---~~sK~~aE~  172 (322)
T PLN02986        161 NWY---PLSKILAEN  172 (322)
T ss_pred             cch---HHHHHHHHH
Confidence            567   888999985

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.83  E-value=1.4e-19  Score=157.93  Aligned_cols=150  Identities=29%  Similarity=0.379  Sum_probs=111.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCCCh-hhhhhhhcCCceEEEecccccccc-------CCcCEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLL-------IEVDQI  101 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~v  101 (190)
                      ++|+|+||||+||||+++++.|++++ +++|++++|...... ..+.......++.++.+|+.|...       .++|+|
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V   84 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI   84 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence            56899999999999999999999973 578888877421111 111111123478899999998532       469999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecceecCCCCCCC---CCCCCccCCCCCCcccch
Q 029640          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHP---QDESYWGNVNPIGMFSFV  176 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~~~~~~~~~~---~~e~~~~~~~~~~~~~~y  176 (190)
                      ||+|+......+..++.+.+++|+.++.+++++|++.+ + |+||+||..+||.....+   .+|+     .+..+.+.|
T Consensus        85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~-----~~~~p~~~Y  159 (668)
T PLN02260         85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEA-----SQLLPTNPY  159 (668)
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCcccc-----CCCCCCCCc
Confidence            99999766544445667788999999999999999987 5 899999999999754432   2343     344455678


Q ss_pred             hhhhHHHHhhhh
Q 029640          177 LKDGIMKLIGEL  188 (190)
Q Consensus       177 ~~~~~sK~~~E~  188 (190)
                         +.+|+.+|+
T Consensus       160 ---~~sK~~aE~  168 (668)
T PLN02260        160 ---SATKAGAEM  168 (668)
T ss_pred             ---HHHHHHHHH
Confidence               888999986

>PLN02650 dihydroflavonol-4-reductase

Probab=99.83  E-value=1.8e-19  Score=146.10  Aligned_cols=151  Identities=24%  Similarity=0.313  Sum_probs=107.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc----CCceEEEeccccccc-----cCCcCEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPL-----LIEVDQIY  102 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~-----~~~~d~vi  102 (190)
                      .++|+||||+||||+++++.|+++ |++|+++.|+...... +..+..    ...+.++.+|+.+..     +.++|+||
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~~-G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi   82 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLER-GYTVRATVRDPANVKK-VKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF   82 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHC-CCEEEEEEcCcchhHH-HHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence            478999999999999999999999 8999988886443322 111111    125788999999864     23699999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecceecCCCC-CCC-CCCCCccCCC----CCCccc
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPL-VHP-QDESYWGNVN----PIGMFS  174 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~~~~~~~-~~~-~~e~~~~~~~----~~~~~~  174 (190)
                      |+|+..... ........+++|+.++.+++++|.+.+ + |+||+||.++|+... ..+ ++|+.|.+.+    +..+.+
T Consensus        83 H~A~~~~~~-~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~  161 (351)
T PLN02650         83 HVATPMDFE-SKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGW  161 (351)
T ss_pred             EeCCCCCCC-CCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccc
Confidence            999864321 122234688999999999999999876 5 899999998776432 223 5777553221    112234


Q ss_pred             chhhhhHHHHhhhh
Q 029640          175 FVLKDGIMKLIGEL  188 (190)
Q Consensus       175 ~y~~~~~sK~~~E~  188 (190)
                      .|   +.||..+|+
T Consensus       162 ~Y---~~sK~~~E~  172 (351)
T PLN02650        162 MY---FVSKTLAEK  172 (351)
T ss_pred             hH---HHHHHHHHH
Confidence            56   888999986

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=99.83  E-value=2.3e-19  Score=143.51  Aligned_cols=151  Identities=23%  Similarity=0.310  Sum_probs=106.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---c-CCceEEEeccccccc-----cCCcCEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---G-HPRFELIRHDVTEPL-----LIEVDQI  101 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~-~~~~~~~~~D~~~~~-----~~~~d~v  101 (190)
                      .+++|+||||+||||+++++.|+++ |++|.++.|+...... ...+.   . ..++.++.+|+.+..     +.++|+|
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~-g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V   80 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQR-GYTVKATVRDPNDPKK-TEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV   80 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHC-CCEEEEEEcCCCchhh-HHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence            4689999999999999999999999 8999988886543221 11111   1 246889999999864     3579999


Q ss_pred             EEccCCCCCcccccCc-hhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecce--ecCCC---CCCCCCCCCccCCC-CCCc
Q 029640          102 YHLACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSE--VYGDP---LVHPQDESYWGNVN-PIGM  172 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~~--~~~~~---~~~~~~e~~~~~~~-~~~~  172 (190)
                      ||+|+....  ....+ ..++++|+.++.+++++|++. ++ |+|++||.+  +|+..   ...+++|+.+.... +...
T Consensus        81 ih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~  158 (322)
T PLN02662         81 FHTASPFYH--DVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEES  158 (322)
T ss_pred             EEeCCcccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhcc
Confidence            999986532  22234 378899999999999999887 66 899999976  46532   22356776321100 0111


Q ss_pred             ccchhhhhHHHHhhhh
Q 029640          173 FSFVLKDGIMKLIGEL  188 (190)
Q Consensus       173 ~~~y~~~~~sK~~~E~  188 (190)
                      ...|   +.+|+.+|+
T Consensus       159 ~~~Y---~~sK~~~E~  171 (322)
T PLN02662        159 KLWY---VLSKTLAEE  171 (322)
T ss_pred             cchH---HHHHHHHHH
Confidence            2356   888999885

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.83  E-value=1.3e-19  Score=144.08  Aligned_cols=143  Identities=37%  Similarity=0.482  Sum_probs=108.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----CCc-CEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----IEV-DQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~-d~vi~~ag  106 (190)
                      |+|+||||+||||++|++.|+++ |++|.+++|.........      ..+.++.+|+.+...     ... |+|||+|+
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa   73 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAA-GHDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAA   73 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhC-CCeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEccc
Confidence            34999999999999999999999 999999998665543322      356788888887532     234 99999999


Q ss_pred             CCCCccccc-CchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCC-CCCCCCCCCccCCCCCCcccchhhhhHHH
Q 029640          107 PASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LVHPQDESYWGNVNPIGMFSFVLKDGIMK  183 (190)
Q Consensus       107 ~~~~~~~~~-~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~-~~~~~~e~~~~~~~~~~~~~~y~~~~~sK  183 (190)
                      ......... ++...+.+|+.++.+++++|++.++ ++||.||.++|+.. ...+++|+.    .+..+.+.|   +.+|
T Consensus        74 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~----~~~~p~~~Y---g~sK  146 (314)
T COG0451          74 QSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDL----GPPRPLNPY---GVSK  146 (314)
T ss_pred             cCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCccccc----CCCCCCCHH---HHHH
Confidence            766443322 3566899999999999999999776 89998887877765 333677773    234443466   8889


Q ss_pred             Hhhhhc
Q 029640          184 LIGELG  189 (190)
Q Consensus       184 ~~~E~~  189 (190)
                      +.+|+.
T Consensus       147 ~~~E~~  152 (314)
T COG0451         147 LAAEQL  152 (314)
T ss_pred             HHHHHH
Confidence            999963

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=99.83  E-value=7.2e-20  Score=145.75  Aligned_cols=134  Identities=22%  Similarity=0.323  Sum_probs=94.8

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc---------c-----cCCcCE
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP---------L-----LIEVDQ  100 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~---------~-----~~~~d~  100 (190)
                      |+||||+||||++|++.|++. |++++++.|+...... ..        .+..+|+.|.         .     ..++|+
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~-g~~~v~~~~~~~~~~~-~~--------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~   71 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDK-GITDILVVDNLKDGTK-FV--------NLVDLDIADYMDKEDFLAQIMAGDDFGDIEA   71 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhC-CCceEEEecCCCcchH-HH--------hhhhhhhhhhhhHHHHHHHHhcccccCCccE
Confidence            799999999999999999999 7755555443322111 10        1112233221         1     126899


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhh
Q 029640          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDG  180 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~  180 (190)
                      |||+||.....  ..++...++.|+.++.+++++|++.++++||+||.++|+.....+++|+     .+..+.+.|   +
T Consensus        72 Vih~A~~~~~~--~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y---~  141 (308)
T PRK11150         72 IFHEGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTDDFIEER-----EYEKPLNVY---G  141 (308)
T ss_pred             EEECceecCCc--CCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcchHHhCcCCCCCCccC-----CCCCCCCHH---H
Confidence            99999854432  2234567899999999999999998889999999999997655456665     344555667   8


Q ss_pred             HHHHhhhh
Q 029640          181 IMKLIGEL  188 (190)
Q Consensus       181 ~sK~~~E~  188 (190)
                      .+|+.+|+
T Consensus       142 ~sK~~~E~  149 (308)
T PRK11150        142 YSKFLFDE  149 (308)
T ss_pred             HHHHHHHH
Confidence            88999885

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=99.82  E-value=1.9e-19  Score=147.06  Aligned_cols=146  Identities=25%  Similarity=0.273  Sum_probs=107.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~a  105 (190)
                      .+|+|+||||+||||+++++.|+++ |++|++++|........     ......++.+|+.+..     ..++|+|||+|
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~-G~~V~~v~r~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAE-GHYIIASDWKKNEHMSE-----DMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhC-CCEEEEEEecccccccc-----ccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            5689999999999999999999999 89999998854321110     0113567788998753     34799999999


Q ss_pred             CCCCCc-ccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCC----CCCCCCCccCCCCCCcccchhhh
Q 029640          106 CPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV----HPQDESYWGNVNPIGMFSFVLKD  179 (190)
Q Consensus       106 g~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~----~~~~e~~~~~~~~~~~~~~y~~~  179 (190)
                      +..... ....++...+..|+.++.+++++|++.++ ++||+||..+|+....    .++.|+..   .+..+.+.|   
T Consensus        94 a~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~---~p~~p~s~Y---  167 (370)
T PLN02695         94 ADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDA---WPAEPQDAY---  167 (370)
T ss_pred             cccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccC---CCCCCCCHH---
Confidence            865422 11234455678899999999999999887 8999999999996532    13555421   245566677   


Q ss_pred             hHHHHhhhh
Q 029640          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      +.+|..+|+
T Consensus       168 g~sK~~~E~  176 (370)
T PLN02695        168 GLEKLATEE  176 (370)
T ss_pred             HHHHHHHHH
Confidence            888999985

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=99.82  E-value=1.8e-19  Score=144.21  Aligned_cols=151  Identities=32%  Similarity=0.388  Sum_probs=114.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCCChhhhhhh-hcCCceEEEeccccccc-----cCCcCEEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKW-IGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~-----~~~~d~vi~  103 (190)
                      ++.+++||||+||+|+++++.|++++ ..++.+++..+......-... ..+..+..+++|+.+..     +.++ .|+|
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~-~Vvh   81 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQGA-VVVH   81 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccCc-eEEE
Confidence            56789999999999999999999994 378999888654222111111 12568899999999874     4467 7888


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCC-CCCCCCCccCCCCCCcccchhhhhH
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV-HPQDESYWGNVNPIGMFSFVLKDGI  181 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~-~~~~e~~~~~~~~~~~~~~y~~~~~  181 (190)
                      +|+...+.....+++..+++|+.+|.++++.|.+.++ ++||+||.+|...... ..-+|+.+   .|......|   +.
T Consensus        82 ~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p---~p~~~~d~Y---~~  155 (361)
T KOG1430|consen   82 CAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLP---YPLKHIDPY---GE  155 (361)
T ss_pred             eccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCC---Ccccccccc---ch
Confidence            8877777666667889999999999999999999998 9999999998776655 34455422   223333567   77


Q ss_pred             HHHhhhh
Q 029640          182 MKLIGEL  188 (190)
Q Consensus       182 sK~~~E~  188 (190)
                      ||+.+|+
T Consensus       156 sKa~aE~  162 (361)
T KOG1430|consen  156 SKALAEK  162 (361)
T ss_pred             HHHHHHH
Confidence            7999996

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=99.82  E-value=1.6e-19  Score=142.25  Aligned_cols=126  Identities=29%  Similarity=0.383  Sum_probs=100.4

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----c--CCcCEEEEccC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----L--IEVDQIYHLAC  106 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~--~~~d~vi~~ag  106 (190)
                      +|+||||+||||+++++.|+++ |++|+++.|+                    .+|+.+.+     +  .++|+|||+|+
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~-g~~v~~~~r~--------------------~~d~~~~~~~~~~~~~~~~d~vi~~a~   59 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPE-GRVVVALTSS--------------------QLDLTDPEALERLLRAIRPDAVVNTAA   59 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhc-CCEEEEeCCc--------------------ccCCCCHHHHHHHHHhCCCCEEEECCc
Confidence            5899999999999999999999 8999999884                    23444432     1  24799999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhh
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIG  186 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~  186 (190)
                      ..........+...+++|+.++.++++++++.+.++|++||.++|+.....+++|+.     +..+.+.|   +.+|..+
T Consensus        60 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~Ss~~vy~~~~~~~~~E~~-----~~~~~~~Y---~~~K~~~  131 (287)
T TIGR01214        60 YTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVFDGEGKRPYREDD-----ATNPLNVY---GQSKLAG  131 (287)
T ss_pred             cccccccccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecCCCCCCCCCCC-----CCCCcchh---hHHHHHH
Confidence            665433344567789999999999999999888899999999999876666788883     44455677   8889999


Q ss_pred             hh
Q 029640          187 EL  188 (190)
Q Consensus       187 E~  188 (190)
                      |+
T Consensus       132 E~  133 (287)
T TIGR01214       132 EQ  133 (287)
T ss_pred             HH
Confidence            85

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=99.82  E-value=4.4e-19  Score=141.62  Aligned_cols=146  Identities=35%  Similarity=0.576  Sum_probs=111.1

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEEEccC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLAC  106 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~~ag  106 (190)
                      +|+||||+|+||+++++.|+++ +++|++++|.................+.++.+|+.+...       .++|+|||+||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~-g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag   79 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLES-GHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAG   79 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhC-CCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECcc
Confidence            5899999999999999999999 888888866443333222222111257788899998742       26999999999


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHh
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      ..........+.+.+..|+.++.+++++|.+.++ ++|++||.++|+.....+++|+     ++..+...|   +.+|..
T Consensus        80 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~-----~~~~~~~~y---~~sK~~  151 (328)
T TIGR01179        80 LIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISED-----SPLGPINPY---GRSKLM  151 (328)
T ss_pred             ccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCcccc-----CCCCCCCch---HHHHHH
Confidence            7654434456677899999999999999998886 8999999999987665577887     344455667   888999


Q ss_pred             hhh
Q 029640          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      +|+
T Consensus       152 ~e~  154 (328)
T TIGR01179       152 SER  154 (328)
T ss_pred             HHH
Confidence            885

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=99.81  E-value=6.7e-19  Score=140.03  Aligned_cols=147  Identities=33%  Similarity=0.456  Sum_probs=108.3

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCC-ChhhhhhhhcCCceEEEecccccccc-----C--CcCEEEEc
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHL  104 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~-----~--~~d~vi~~  104 (190)
                      +|+||||+|+||+++++.|+++++ .+|+++.|.... ....+..+.....+.++.+|+.|...     .  ++|+|||+
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~   80 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF   80 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence            589999999999999999999832 688888763211 11222222223467888999998642     2  38999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--CeEEEEecceecCCCCCC-CCCCCCccCCCCCCcccchhhhhH
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDPLVH-PQDESYWGNVNPIGMFSFVLKDGI  181 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~i~vSS~~~~~~~~~~-~~~e~~~~~~~~~~~~~~y~~~~~  181 (190)
                      |+......+...++..+++|+.++.+++++|++.+  .++|++||..+|+..... +++|.     .+..+...|   +.
T Consensus        81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~-----~~~~~~~~Y---~~  152 (317)
T TIGR01181        81 AAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTET-----TPLAPSSPY---SA  152 (317)
T ss_pred             ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCC-----CCCCCCCch---HH
Confidence            98765444455677889999999999999998863  499999999999965432 56676     344455567   88


Q ss_pred             HHHhhhh
Q 029640          182 MKLIGEL  188 (190)
Q Consensus       182 sK~~~E~  188 (190)
                      +|+.+|.
T Consensus       153 sK~~~e~  159 (317)
T TIGR01181       153 SKAASDH  159 (317)
T ss_pred             HHHHHHH
Confidence            8999885

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=99.81  E-value=1e-18  Score=140.40  Aligned_cols=136  Identities=26%  Similarity=0.370  Sum_probs=102.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----CCcCEEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----IEVDQIYH  103 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~d~vi~  103 (190)
                      +++|+++||||+|+||+++++.|++++ +++|++++|+..... .+........+.++.+|+.|...     .++|+|||
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~-~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih   80 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQW-EMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVH   80 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHH-HHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEE
Confidence            367999999999999999999999983 378988887644321 12222223468899999999753     46999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHH
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIM  182 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~s  182 (190)
                      +||.......+.++.+.+++|+.++.++++++.+.++ ++|++||...                   ..+.+.|   +.|
T Consensus        81 ~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~-------------------~~p~~~Y---~~s  138 (324)
T TIGR03589        81 AAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKA-------------------ANPINLY---GAT  138 (324)
T ss_pred             CcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCC-------------------CCCCCHH---HHH
Confidence            9997554444556778999999999999999999886 8999998421                   1122456   888


Q ss_pred             HHhhhh
Q 029640          183 KLIGEL  188 (190)
Q Consensus       183 K~~~E~  188 (190)
                      |+.+|+
T Consensus       139 K~~~E~  144 (324)
T TIGR03589       139 KLASDK  144 (324)
T ss_pred             HHHHHH
Confidence            999885

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=99.80  E-value=1.1e-18  Score=139.70  Aligned_cols=143  Identities=28%  Similarity=0.420  Sum_probs=108.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~  107 (190)
                      |+++||||+|+||+++++.|+++ +++|++++|+...... +    ...++.++.+|+.+..     ..++|+|||+|+.
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~-~----~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~   74 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQ-GEEVRVLVRPTSDRRN-L----EGLDVEIVEGDLRDPASLRKAVAGCRALFHVAAD   74 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHC-CCEEEEEEecCccccc-c----ccCCceEEEeeCCCHHHHHHHHhCCCEEEEecee
Confidence            57999999999999999999999 8999999986544221 1    1236788999999864     3468999999975


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCC-CCCCCCCCCCccCCCCCCcccchhhhhHHHHh
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD-PLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~-~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      ...  ....++..+++|+.++.++++++.+.++ ++|++||.++|+. ....+++|+.     +..+...++.|+.+|..
T Consensus        75 ~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~-----~~~~~~~~~~Y~~sK~~  147 (328)
T TIGR03466        75 YRL--WAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETT-----PSSLDDMIGHYKRSKFL  147 (328)
T ss_pred             ccc--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccC-----CCCcccccChHHHHHHH
Confidence            422  2345678899999999999999998886 8999999999985 3445677773     33322222234888998


Q ss_pred             hhh
Q 029640          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      +|+
T Consensus       148 ~e~  150 (328)
T TIGR03466       148 AEQ  150 (328)
T ss_pred             HHH
Confidence            875

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=99.79  E-value=6e-19  Score=140.03  Aligned_cols=129  Identities=22%  Similarity=0.214  Sum_probs=96.3

Q ss_pred             EEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEEEccCCC
Q 029640           36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLACPA  108 (190)
Q Consensus        36 lItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~~ag~~  108 (190)
                      |||||+||||++|++.|++. ++.|+++.+..                   .+|+.+...       .++|+|||+|+..
T Consensus         1 lItGa~GfiG~~l~~~L~~~-g~~v~~~~~~~-------------------~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~   60 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEAL-GFTNLVLRTHK-------------------ELDLTRQADVEAFFAKEKPTYVILAAAKV   60 (306)
T ss_pred             CcccCCCcccHHHHHHHHhC-CCcEEEeeccc-------------------cCCCCCHHHHHHHHhccCCCEEEEeeeee
Confidence            69999999999999999998 66666554321                   256655421       2589999999865


Q ss_pred             CC-cccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCccc-chhhhhHHHHh
Q 029640          109 SP-IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS-FVLKDGIMKLI  185 (190)
Q Consensus       109 ~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~-~y~~~~~sK~~  185 (190)
                      .. ..+...+.+.+++|+.++.+++++|+++++ ++|++||+.+|+.....+++|+++.. .+..+.+ .|   +.+|..
T Consensus        61 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y---~~sK~~  136 (306)
T PLN02725         61 GGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLT-GPPEPTNEWY---AIAKIA  136 (306)
T ss_pred             cccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhcc-CCCCCCcchH---HHHHHH
Confidence            42 223345677899999999999999999987 89999999999976667888875321 1333322 47   888999


Q ss_pred             hhh
Q 029640          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      +|+
T Consensus       137 ~e~  139 (306)
T PLN02725        137 GIK  139 (306)
T ss_pred             HHH
Confidence            985

>PLN02686 cinnamoyl-CoA reductase

Probab=99.79  E-value=2.2e-18  Score=140.66  Aligned_cols=156  Identities=18%  Similarity=0.185  Sum_probs=109.4

Q ss_pred             cccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-------CCceEEEeccccccc-----c
Q 029640           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-------HPRFELIRHDVTEPL-----L   95 (190)
Q Consensus        28 ~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~-----~   95 (190)
                      ..+++++|+||||+||||+++++.|+++ |++|+++.|+..... .+..+..       ...+.++.+|+.|..     +
T Consensus        49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~-G~~V~~~~r~~~~~~-~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i  126 (367)
T PLN02686         49 ADAEARLVCVTGGVSFLGLAIVDRLLRH-GYSVRIAVDTQEDKE-KLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAF  126 (367)
T ss_pred             cCCCCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HHHHHhhhccccccCCceEEEEcCCCCHHHHHHHH
Confidence            3457899999999999999999999999 899988777543211 1222110       125788899999864     3


Q ss_pred             CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecc--eecCCC--C--CCCCCCCCccCC
Q 029640           96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTS--EVYGDP--L--VHPQDESYWGNV  167 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~--~~~~~~--~--~~~~~e~~~~~~  167 (190)
                      .++|+|||+|+...+...........++|+.++.+++++|++. ++ |+||+||.  .+|+..  .  +.+++|+.|...
T Consensus       127 ~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~  206 (367)
T PLN02686        127 DGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDE  206 (367)
T ss_pred             HhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCCh
Confidence            4699999999876443211122355688999999999999886 56 89999996  477642  1  234677754322


Q ss_pred             -CCCCcccchhhhhHHHHhhhh
Q 029640          168 -NPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       168 -~~~~~~~~y~~~~~sK~~~E~  188 (190)
                       .+..+.+.|   +.||+.+|+
T Consensus       207 ~~~~~p~~~Y---~~sK~~~E~  225 (367)
T PLN02686        207 SFCRDNKLWY---ALGKLKAEK  225 (367)
T ss_pred             hhcccccchH---HHHHHHHHH
Confidence             233344556   888999986

>PLN02583 cinnamoyl-CoA reductase

Probab=99.78  E-value=4.2e-18  Score=135.19  Aligned_cols=153  Identities=18%  Similarity=0.221  Sum_probs=106.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh--hhhhhhh-cCCceEEEeccccccc-----cCCcCEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK--DNLRKWI-GHPRFELIRHDVTEPL-----LIEVDQIY  102 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~--~~~~~~~-~~~~~~~~~~D~~~~~-----~~~~d~vi  102 (190)
                      ++++|+||||+|+||+++++.|+++ |++|+++.|+.....  ..+..+. ...++.++.+|++|..     +.++|+|+
T Consensus         5 ~~k~vlVTGatG~IG~~lv~~Ll~~-G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~   83 (297)
T PLN02583          5 SSKSVCVMDASGYVGFWLVKRLLSR-GYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLF   83 (297)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEE
Confidence            5689999999999999999999999 899999888532211  1122221 1236888999999864     35799999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecceec--CCC---CCCCCCCCCccCCCCC-Cccc
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVY--GDP---LVHPQDESYWGNVNPI-GMFS  174 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~~~~--~~~---~~~~~~e~~~~~~~~~-~~~~  174 (190)
                      |.++.....  ....+.++++|+.++.+++++|.+. ++ |+|++||..++  +..   ...+++|+.|.+.... ....
T Consensus        84 ~~~~~~~~~--~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  161 (297)
T PLN02583         84 CCFDPPSDY--PSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKL  161 (297)
T ss_pred             EeCccCCcc--cccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhccc
Confidence            987644321  1235678999999999999999886 45 89999998764  311   2235777755322111 1112


Q ss_pred             chhhhhHHHHhhhhc
Q 029640          175 FVLKDGIMKLIGELG  189 (190)
Q Consensus       175 ~y~~~~~sK~~~E~~  189 (190)
                      .|   +.||..+|+.
T Consensus       162 ~Y---~~sK~~aE~~  173 (297)
T PLN02583        162 WH---ALAKTLSEKT  173 (297)
T ss_pred             HH---HHHHHHHHHH
Confidence            45   8889999873

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.78  E-value=3.4e-18  Score=141.79  Aligned_cols=143  Identities=26%  Similarity=0.328  Sum_probs=115.2

Q ss_pred             hhcccccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh---hcCCceEEEecccccccc-----
Q 029640           24 RFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPLL-----   95 (190)
Q Consensus        24 ~~~~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~-----   95 (190)
                      ..-..+..+|+|+||||+|.||+.+++.+++.+-.++++++|+......--.++   ++..++.++-+|+.|.+.     
T Consensus       242 ~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~  321 (588)
T COG1086         242 ELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAM  321 (588)
T ss_pred             HHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHH
Confidence            333445689999999999999999999999995578888888655443332222   234788999999999753     


Q ss_pred             C--CcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCc
Q 029640           96 I--EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGM  172 (190)
Q Consensus        96 ~--~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~  172 (190)
                      .  ++|+|||+|+.-.++.++.+|.+.+++|+.||.|++++|.++++ ++|++||.                   .-.+|
T Consensus       322 ~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTD-------------------KAV~P  382 (588)
T COG1086         322 EGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTD-------------------KAVNP  382 (588)
T ss_pred             hcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecC-------------------cccCC
Confidence            2  49999999998888888999999999999999999999999998 89999982                   23334


Q ss_pred             ccchhhhhHHHHhhhh
Q 029640          173 FSFVLKDGIMKLIGEL  188 (190)
Q Consensus       173 ~~~y~~~~~sK~~~E~  188 (190)
                      .+.|   |.+|..+|+
T Consensus       383 tNvm---GaTKr~aE~  395 (588)
T COG1086         383 TNVM---GATKRLAEK  395 (588)
T ss_pred             chHh---hHHHHHHHH
Confidence            4678   888999885

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=99.77  E-value=1.7e-18  Score=134.22  Aligned_cols=145  Identities=27%  Similarity=0.298  Sum_probs=87.9

Q ss_pred             EEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCCh--hhhhhh---------h---cCCceEEEecccccccc------
Q 029640           37 VTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSK--DNLRKW---------I---GHPRFELIRHDVTEPLL------   95 (190)
Q Consensus        37 ItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~--~~~~~~---------~---~~~~~~~~~~D~~~~~~------   95 (190)
                      |||||||||+++++.|++++. .+|+++.|......  +.+...         .   ...++.++.+|+.++.+      
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            799999999999999999943 28999999653311  112110         0   15699999999998753      


Q ss_pred             -----CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCC-----Cc
Q 029640           96 -----IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDES-----YW  164 (190)
Q Consensus        96 -----~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~-----~~  164 (190)
                           .++|+|||||+.+...   .+..+.+++|+.++.++++.|..... +++|+||+.+.+.... .+.|.     ..
T Consensus        81 ~~~L~~~v~~IiH~Aa~v~~~---~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~-~~~~~~~~~~~~  156 (249)
T PF07993_consen   81 YQELAEEVDVIIHCAASVNFN---APYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPG-TIEEKVYPEEED  156 (249)
T ss_dssp             HHHHHHH--EEEE--SS-SBS----S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TT-T--SSS-HHH--
T ss_pred             hhccccccceeeecchhhhhc---ccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCC-cccccccccccc
Confidence                 2599999999876532   24556789999999999999996554 9999999666554332 22221     11


Q ss_pred             cCCCCCCcccchhhhhHHHHhhhh
Q 029640          165 GNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       165 ~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      .........+.|   .+||+.+|+
T Consensus       157 ~~~~~~~~~~gY---~~SK~~aE~  177 (249)
T PF07993_consen  157 DLDPPQGFPNGY---EQSKWVAER  177 (249)
T ss_dssp             EEE--TTSEE-H---HHHHHHHHH
T ss_pred             cchhhccCCccH---HHHHHHHHH
Confidence            112233334577   888999997

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=99.77  E-value=5.2e-18  Score=135.09  Aligned_cols=137  Identities=24%  Similarity=0.326  Sum_probs=99.5

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc---------CCcCEEEEc
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL---------IEVDQIYHL  104 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---------~~~d~vi~~  104 (190)
                      |+||||+||||+++++.|+++ ++ +|.+++|.....  .+..+    ....+..|+.+.+.         .++|+|||+
T Consensus         1 ilItGatG~iG~~l~~~L~~~-g~~~v~~~~~~~~~~--~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~   73 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNER-GITDILVVDNLRDGH--KFLNL----ADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQ   73 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHc-CCceEEEEecCCCch--hhhhh----hheeeeccCcchhHHHHHHhhccCCCCEEEEC
Confidence            689999999999999999999 65 788887654322  11111    11234566665421         469999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHH
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKL  184 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~  184 (190)
                      |+....  ...++...+++|+.++.+++++|.+.++++|++||+++|+.... +++|+.    .+..+.+.|   +.+|.
T Consensus        74 A~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~-~~~e~~----~~~~p~~~Y---~~sK~  143 (314)
T TIGR02197        74 GACSDT--TETDGEYMMENNYQYSKRLLDWCAEKGIPFIYASSAATYGDGEA-GFREGR----ELERPLNVY---GYSKF  143 (314)
T ss_pred             ccccCc--cccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEccHHhcCCCCC-Cccccc----CcCCCCCHH---HHHHH
Confidence            986432  34456778999999999999999998889999999999997543 455653    122344567   88899


Q ss_pred             hhhh
Q 029640          185 IGEL  188 (190)
Q Consensus       185 ~~E~  188 (190)
                      .+|+
T Consensus       144 ~~e~  147 (314)
T TIGR02197       144 LFDQ  147 (314)
T ss_pred             HHHH
Confidence            8884

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PLN02996 fatty acyl-CoA reductase

Probab=99.77  E-value=1.4e-17  Score=140.37  Aligned_cols=123  Identities=24%  Similarity=0.347  Sum_probs=93.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcC--CCeEEEEcCCCCCChh--hhh-hhhc-------------------CCceEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKD--NLR-KWIG-------------------HPRFEL   85 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~--~~~v~~~~r~~~~~~~--~~~-~~~~-------------------~~~~~~   85 (190)
                      ..+++|+|||||||||+++++.|+...  -.+|+++.|.......  .+. .+..                   ..++.+
T Consensus         9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~   88 (491)
T PLN02996          9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP   88 (491)
T ss_pred             hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence            488999999999999999999999762  2468888886543221  111 1100                   157899


Q ss_pred             Eecccccc-------c-----cCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecceec
Q 029640           86 IRHDVTEP-------L-----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVY  151 (190)
Q Consensus        86 ~~~D~~~~-------~-----~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~~~~  151 (190)
                      +.+|+.++       .     ..++|+|||+|+.+..   ..++...+++|+.++.+++++|++. ++ ++|++||+++|
T Consensus        89 i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vy  165 (491)
T PLN02996         89 VPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNF---DERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVC  165 (491)
T ss_pred             EecccCCcCCCCChHHHHHHHHhCCCEEEECccccCC---cCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEe
Confidence            99999843       1     2369999999987653   2467788999999999999999986 45 89999999999


Q ss_pred             CCCC
Q 029640          152 GDPL  155 (190)
Q Consensus       152 ~~~~  155 (190)
                      |...
T Consensus       166 G~~~  169 (491)
T PLN02996        166 GEKS  169 (491)
T ss_pred             cCCC
Confidence            8743

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.76  E-value=2e-18  Score=134.68  Aligned_cols=132  Identities=28%  Similarity=0.398  Sum_probs=94.3

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEE----Eeccccccc-----cC--CcCE
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFEL----IRHDVTEPL-----LI--EVDQ  100 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~----~~~D~~~~~-----~~--~~d~  100 (190)
                      |+||||+|.||+.|++.|++.+-..+++++++.........++.   +..++.+    +-+|+.|..     +.  ++|+
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi   80 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI   80 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence            79999999999999999999944789999986544433333331   2334443    468998864     23  7999


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhh
Q 029640          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKD  179 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~  179 (190)
                      |||+|+.-.++..+.++.+.+++|+.|+.|++++|.++++ ++|++||.-                   -.+|.+.|   
T Consensus        81 VfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDK-------------------Av~Ptnvm---  138 (293)
T PF02719_consen   81 VFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDK-------------------AVNPTNVM---  138 (293)
T ss_dssp             EEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECG-------------------CSS--SHH---
T ss_pred             EEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc-------------------cCCCCcHH---
Confidence            9999998777778999999999999999999999999998 999999821                   22344678   


Q ss_pred             hHHHHhhhh
Q 029640          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      |.||..+|+
T Consensus       139 GatKrlaE~  147 (293)
T PF02719_consen  139 GATKRLAEK  147 (293)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999986

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.75  E-value=2.7e-17  Score=143.22  Aligned_cols=144  Identities=31%  Similarity=0.342  Sum_probs=106.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHh--cCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEeccccccc----------cCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLME--NEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL----------LIE   97 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~--~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~----------~~~   97 (190)
                      |+|+||||+||||+++++.|++  . +++|.++.|+..  ...+..+.   ...+++++.+|+.+..          ..+
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~-g~~V~~l~R~~~--~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~   77 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRR-EATVHVLVRRQS--LSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGD   77 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCC-CCEEEEEECcch--HHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcC
Confidence            5799999999999999999995  5 789999998532  22222221   1247899999998842          157


Q ss_pred             cCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccch
Q 029640           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFV  176 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y  176 (190)
                      +|+|||+||.....   ......+++|+.++.+++++|++.++ ++||+||..+|+.... +++|+.++.  +..+.+.|
T Consensus        78 ~D~Vih~Aa~~~~~---~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~-~~~e~~~~~--~~~~~~~Y  151 (657)
T PRK07201         78 IDHVVHLAAIYDLT---ADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEG-VFREDDFDE--GQGLPTPY  151 (657)
T ss_pred             CCEEEECceeecCC---CCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccC-ccccccchh--hcCCCCch
Confidence            99999999865432   24566789999999999999999876 8999999999986433 455654321  12223467


Q ss_pred             hhhhHHHHhhhh
Q 029640          177 LKDGIMKLIGEL  188 (190)
Q Consensus       177 ~~~~~sK~~~E~  188 (190)
                         +.+|+.+|+
T Consensus       152 ---~~sK~~~E~  160 (657)
T PRK07201        152 ---HRTKFEAEK  160 (657)
T ss_pred             ---HHHHHHHHH
Confidence               888999986

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.74  E-value=3.4e-17  Score=143.03  Aligned_cols=133  Identities=19%  Similarity=0.209  Sum_probs=95.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEE-EEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVI-VVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~-~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      ..|+|+||||+||||++|++.|.++ +++|. ...+  -.....+..            ++   ...++|+|||+|+.+.
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~-g~~v~~~~~~--l~d~~~v~~------------~i---~~~~pd~Vih~Aa~~~  440 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQ-GIAYEYGKGR--LEDRSSLLA------------DI---RNVKPTHVFNAAGVTG  440 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhC-CCeEEeeccc--cccHHHHHH------------HH---HhhCCCEEEECCcccC
Confidence            3478999999999999999999998 77773 2211  001111110            00   1136899999999764


Q ss_pred             ---CcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCC------CCCCCCCCCccCCCCCCcccchhhhh
Q 029640          110 ---PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDP------LVHPQDESYWGNVNPIGMFSFVLKDG  180 (190)
Q Consensus       110 ---~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~------~~~~~~e~~~~~~~~~~~~~~y~~~~  180 (190)
                         .++++.++...+++|+.++.+++++|++.++++|++||.++|+..      ...+++|++    .+..+.+.|   |
T Consensus       441 ~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~----~~~~~~~~Y---g  513 (668)
T PLN02260        441 RPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNFATGCIFEYDAKHPEGSGIGFKEED----KPNFTGSFY---S  513 (668)
T ss_pred             CCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEEcccceecCCcccccccCCCCCcCC----CCCCCCChh---h
Confidence               334567888999999999999999999999988999999998642      123677774    222233678   8


Q ss_pred             HHHHhhhh
Q 029640          181 IMKLIGEL  188 (190)
Q Consensus       181 ~sK~~~E~  188 (190)
                      .||+.+|+
T Consensus       514 ~sK~~~E~  521 (668)
T PLN02260        514 KTKAMVEE  521 (668)
T ss_pred             HHHHHHHH
Confidence            88999996

>TIGR01746 Thioester-redct thioester reductase domain

Probab=99.74  E-value=7.1e-17  Score=130.67  Aligned_cols=148  Identities=27%  Similarity=0.335  Sum_probs=103.6

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCC--CeEEEEcCCCCCCh--hhhhhhh----------cCCceEEEecccccccc----
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSK--DNLRKWI----------GHPRFELIRHDVTEPLL----   95 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~--~~v~~~~r~~~~~~--~~~~~~~----------~~~~~~~~~~D~~~~~~----   95 (190)
                      +|+||||+||||+++++.|+++ +  .+|+++.|......  ..+....          ...++.++.+|+.++.+    
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~-g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~   79 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRR-STQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSD   79 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhC-CCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCH
Confidence            5899999999999999999998 5  67999988654221  1111100          00478999999876531    


Q ss_pred             -------CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCC
Q 029640           96 -------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (190)
Q Consensus        96 -------~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~  167 (190)
                             .++|+|||+|+....   .......+++|+.++.+++++|.+.+. +++++||.++|+.....++.|+.....
T Consensus        80 ~~~~~~~~~~d~vih~a~~~~~---~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~~  156 (367)
T TIGR01746        80 AEWERLAENVDTIVHNGALVNW---VYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIVT  156 (367)
T ss_pred             HHHHHHHhhCCEEEeCCcEecc---CCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCccccccccc
Confidence                   359999999986542   224456778999999999999998887 699999999998644333344422111


Q ss_pred             CCCCcccchhhhhHHHHhhhh
Q 029640          168 NPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       168 ~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      ........|   +.||+.+|+
T Consensus       157 ~~~~~~~~Y---~~sK~~~E~  174 (367)
T TIGR01746       157 PPPGLAGGY---AQSKWVAEL  174 (367)
T ss_pred             cccccCCCh---HHHHHHHHH
Confidence            112223456   888999885

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.73  E-value=4.3e-17  Score=129.71  Aligned_cols=150  Identities=24%  Similarity=0.272  Sum_probs=108.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh--hhhhh---------hcCCceEEEecccccccc------
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD--NLRKW---------IGHPRFELIRHDVTEPLL------   95 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~--~~~~~---------~~~~~~~~~~~D~~~~~~------   95 (190)
                      ++|++||||||+|.+++.+|+.+...+|+++.|.+.....  .+...         ....++..+.+|+..+.+      
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~   80 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT   80 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence            5799999999999999999999855699999986553321  11111         123689999999996643      


Q ss_pred             -----CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCC----cc
Q 029640           96 -----IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESY----WG  165 (190)
Q Consensus        96 -----~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~----~~  165 (190)
                           ..+|.|||+++.+..   -.+..+....|+.|+..+++.|...+. .++||||++++........+++.    ..
T Consensus        81 ~~~La~~vD~I~H~gA~Vn~---v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~  157 (382)
T COG3320          81 WQELAENVDLIIHNAALVNH---VFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPT  157 (382)
T ss_pred             HHHHhhhcceEEecchhhcc---cCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCcccccccccc
Confidence                 249999999986653   234567789999999999999998776 59999999998765443333221    11


Q ss_pred             CCCCCCcccchhhhhHHHHhhhh
Q 029640          166 NVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       166 ~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      ..........|   ++|||.+|+
T Consensus       158 ~~~~~~~~~GY---~~SKwvaE~  177 (382)
T COG3320         158 RNVGQGLAGGY---GRSKWVAEK  177 (382)
T ss_pred             ccccCccCCCc---chhHHHHHH
Confidence            11222234577   899999995

>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]

Probab=99.72  E-value=2.3e-17  Score=126.17  Aligned_cols=149  Identities=25%  Similarity=0.359  Sum_probs=118.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhc-CCCeEEEEcCCC-CCChhhhhhhhcCCceEEEecccccccc-------CCcCEEEE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~-~~~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~  103 (190)
                      ++++||||.||||++.+..+... ...+.+.++.-. ......+......+...+++.|+.+...       ..+|.|||
T Consensus         7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~vih   86 (331)
T KOG0747|consen    7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDTVIH   86 (331)
T ss_pred             ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchhhhhh
Confidence            88999999999999999999997 223444433211 1112334444556899999999998743       36999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecceecCCCCCCCCC-CCCccCCCCCCcccchhhhh
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHPQD-ESYWGNVNPIGMFSFVLKDG  180 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~~~~~~~~~~~~-e~~~~~~~~~~~~~~y~~~~  180 (190)
                      +|+......+..++.+..+.|+.++..|++.+...+ + ++|++||..|||.....+.. |.     ...+|.++|   +
T Consensus        87 faa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~-----s~~nPtnpy---A  158 (331)
T KOG0747|consen   87 FAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEA-----SLLNPTNPY---A  158 (331)
T ss_pred             hHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCcccccccccc-----ccCCCCCch---H
Confidence            999888777777888899999999999999999996 4 89999999999987766655 55     577788899   8


Q ss_pred             HHHHhhhhc
Q 029640          181 IMKLIGELG  189 (190)
Q Consensus       181 ~sK~~~E~~  189 (190)
                      .+|+++|+.
T Consensus       159 asKaAaE~~  167 (331)
T KOG0747|consen  159 ASKAAAEML  167 (331)
T ss_pred             HHHHHHHHH
Confidence            889999973

>PRK06197 short chain dehydrogenase; Provisional

Probab=99.72  E-value=1.1e-16  Score=127.45  Aligned_cols=152  Identities=18%  Similarity=0.100  Sum_probs=101.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~-----------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.|+.+........+.   ....+.++.+|+.|...           
T Consensus        14 ~~~k~vlItGas~gIG~~~a~~l~~~-G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   92 (306)
T PRK06197         14 QSGRVAVVTGANTGLGYETAAALAAK-GAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA   92 (306)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence            37799999999999999999999999 8899999886544333222222   23468889999998642           


Q ss_pred             -CCcCEEEEccCCCCCcc--cccCchhHHHHHHHHHHH----HHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCC
Q 029640           96 -IEVDQIYHLACPASPIF--YKYNPVKTIKTNVIGTLN----MLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~--~~~~~~~~~~~n~~~~~~----l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~  167 (190)
                       .++|+||||||...+..  ..+..+..+++|+.++..    +++.+++.+. ++|++||...+.... ...++..+  .
T Consensus        93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~-~~~~~~~~--~  169 (306)
T PRK06197         93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAA-IHFDDLQW--E  169 (306)
T ss_pred             CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCC-CCccccCc--c
Confidence             35999999999654322  234556789999999554    5555555554 999999987443111 11222211  1


Q ss_pred             CCCCcccchhhhhHHHHhhhh
Q 029640          168 NPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       168 ~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      .++.+...|   +.||++.+.
T Consensus       170 ~~~~~~~~Y---~~SK~a~~~  187 (306)
T PRK06197        170 RRYNRVAAY---GQSKLANLL  187 (306)
T ss_pred             cCCCcHHHH---HHHHHHHHH
Confidence            233333455   888987653

>PRK05854 short chain dehydrogenase; Provisional

Probab=99.71  E-value=1.7e-16  Score=126.87  Aligned_cols=150  Identities=15%  Similarity=0.048  Sum_probs=105.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||+++||+++++.|+++ |++|++..|+.+.....+.++.   ....+.++.+|+.+...           
T Consensus        12 l~gk~~lITGas~GIG~~~a~~La~~-G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~   90 (313)
T PRK05854         12 LSGKRAVVTGASDGLGLGLARRLAAA-GAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE   90 (313)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            47899999999999999999999999 8999999987654444333332   23468899999998632           


Q ss_pred             -CCcCEEEEccCCCCCcc---cccCchhHHHHHHHHHHHHHHHHH----HcCCeEEEEecceecCC-CCCCCCCCCCccC
Q 029640           96 -IEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGD-PLVHPQDESYWGN  166 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~vSS~~~~~~-~~~~~~~e~~~~~  166 (190)
                       .++|+||||||......   ..+..+..+++|+.+...+.+.+.    +...++|++||...+.. .....+.++    
T Consensus        91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~~----  166 (313)
T PRK05854         91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNWE----  166 (313)
T ss_pred             CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCccccccc----
Confidence             35999999999765322   335567789999999988877664    22348999999765432 111122222    


Q ss_pred             CCCCCcccchhhhhHHHHhhhh
Q 029640          167 VNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       167 ~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                       .++.....|   +.||++.+.
T Consensus       167 -~~~~~~~~Y---~~SK~a~~~  184 (313)
T PRK05854        167 -RSYAGMRAY---SQSKIAVGL  184 (313)
T ss_pred             -ccCcchhhh---HHHHHHHHH
Confidence             233333455   888987653

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.71  E-value=8.9e-17  Score=123.09  Aligned_cols=147  Identities=29%  Similarity=0.333  Sum_probs=122.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh-h--hhh--hcCCceEEEeccccccc-------cCCc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-L--RKW--IGHPRFELIRHDVTEPL-------LIEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-~--~~~--~~~~~~~~~~~D~~~~~-------~~~~   98 (190)
                      ++|+.||||-||.-|.+|++.|++. |++|..+.|+....... +  .+.  .+..++.+..+|++|..       ..++
T Consensus         1 ~~K~ALITGITGQDGsYLa~lLLek-GY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~P   79 (345)
T COG1089           1 MGKVALITGITGQDGSYLAELLLEK-GYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQP   79 (345)
T ss_pred             CCceEEEecccCCchHHHHHHHHhc-CcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCc
Confidence            3588999999999999999999999 99999998874433221 1  111  22346889999999974       3479


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC---CeEEEEecceecCCCCCCCCCCCCccCCCCCCcccc
Q 029640           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSF  175 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~  175 (190)
                      |-|+|+|+...+..+.+.|+.+.+++..|+.+++++.+..+   +|+...||+..||.....|.+|.     +|+.|.++
T Consensus        80 dEIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~-----TPFyPrSP  154 (345)
T COG1089          80 DEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSP  154 (345)
T ss_pred             hhheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccC-----CCCCCCCH
Confidence            99999999888888889999999999999999999998764   38999999999998888899999     89999999


Q ss_pred             hhhhhHHHHhh
Q 029640          176 VLKDGIMKLIG  186 (190)
Q Consensus       176 y~~~~~sK~~~  186 (190)
                      |   +.+|+.+
T Consensus       155 Y---AvAKlYa  162 (345)
T COG1089         155 Y---AVAKLYA  162 (345)
T ss_pred             H---HHHHHHH
Confidence            9   6669875

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=99.70  E-value=2.1e-16  Score=126.78  Aligned_cols=121  Identities=14%  Similarity=0.138  Sum_probs=90.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------CC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      .+++++||||+|+||+++++.|+++ |++|+++.|+..........+. ....+.++.+|+.+...            .+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~   83 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKR-GWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKP   83 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999999999 7999999886544333333321 23468889999998642            24


Q ss_pred             cCEEEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHHHH----cC---CeEEEEecceecC
Q 029640           98 VDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG---ARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~---~~~i~vSS~~~~~  152 (190)
                      +|+||||||.....     .+.+.++..+++|+.++.++++++..    .+   .|+|++||...+.
T Consensus        84 iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~  150 (322)
T PRK07453         84 LDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANP  150 (322)
T ss_pred             ccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCc
Confidence            99999999965431     12334667899999999998877753    22   3999999987653

>PLN02503 fatty acyl-CoA reductase 2

Probab=99.69  E-value=7.4e-16  Score=131.76  Aligned_cols=131  Identities=23%  Similarity=0.290  Sum_probs=98.2

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCC--CeEEEEcCCCCCCh--hhhh-hhh------------c-------CCceE
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSK--DNLR-KWI------------G-------HPRFE   84 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~--~~v~~~~r~~~~~~--~~~~-~~~------------~-------~~~~~   84 (190)
                      +..+++|+|||||||||++|++.|++...  .+|+++.|......  +.+. .+.            +       ..++.
T Consensus       116 f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~  195 (605)
T PLN02503        116 FLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLV  195 (605)
T ss_pred             hhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEE
Confidence            45789999999999999999999998632  47888888644321  1111 110            0       24788


Q ss_pred             EEecccccccc-----------CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecceec
Q 029640           85 LIRHDVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVY  151 (190)
Q Consensus        85 ~~~~D~~~~~~-----------~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~~~  151 (190)
                      .+.+|+.++.+           .++|+|||+|+....   ..+++..+++|+.++.+++++|++.+ . ++||+||+++|
T Consensus       196 ~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f---~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVy  272 (605)
T PLN02503        196 PVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTF---DERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVN  272 (605)
T ss_pred             EEEeeCCCcccCCCHHHHHHHHhcCCEEEECcccccc---ccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceee
Confidence            99999998631           359999999986652   34677889999999999999998875 4 79999999999


Q ss_pred             CCCCCCCCCCCC
Q 029640          152 GDPLVHPQDESY  163 (190)
Q Consensus       152 ~~~~~~~~~e~~  163 (190)
                      |...+ .+.|..
T Consensus       273 G~~~G-~i~E~~  283 (605)
T PLN02503        273 GQRQG-RIMEKP  283 (605)
T ss_pred             cCCCC-eeeeee
Confidence            97543 444543

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.68  E-value=1e-15  Score=125.91  Aligned_cols=122  Identities=24%  Similarity=0.293  Sum_probs=91.3

Q ss_pred             hcccccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh--hhhh-hcCCceEEEecccccccc-----C
Q 029640           25 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN--LRKW-IGHPRFELIRHDVTEPLL-----I   96 (190)
Q Consensus        25 ~~~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~--~~~~-~~~~~~~~~~~D~~~~~~-----~   96 (190)
                      +......+++|+||||+|+||+++++.|+++ |++|+++.|+.......  .... ....++.++.+|++|.+.     .
T Consensus        53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~-G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~  131 (390)
T PLN02657         53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRR-GYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLF  131 (390)
T ss_pred             ccccCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHH
Confidence            3344457899999999999999999999999 89999999875432110  0001 112468899999998642     2


Q ss_pred             ----CcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecC
Q 029640           97 ----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ----~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~  152 (190)
                          ++|+||||++....     .....+++|+.++.++++++++.++ ++|++||.+++.
T Consensus       132 ~~~~~~D~Vi~~aa~~~~-----~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~  187 (390)
T PLN02657        132 SEGDPVDVVVSCLASRTG-----GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQK  187 (390)
T ss_pred             HhCCCCcEEEECCccCCC-----CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccC
Confidence                59999999874321     1234578899999999999999987 899999988764

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=99.68  E-value=5.7e-16  Score=122.01  Aligned_cols=123  Identities=18%  Similarity=0.206  Sum_probs=86.7

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCCc--c
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI--F  112 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~~--~  112 (190)
                      |+||||+||||+++++.|+++ +++|+++.|+.........     ..+.....+.....+.++|+|||+||.....  +
T Consensus         1 vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~D~Vvh~a~~~~~~~~~   74 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKD-GHEVTILTRSPPAGANTKW-----EGYKPWAPLAESEALEGADAVINLAGEPIADKRW   74 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHc-CCEEEEEeCCCCCCCcccc-----eeeecccccchhhhcCCCCEEEECCCCCcccccC
Confidence            689999999999999999999 8999999997665432110     0111111112223446799999999865432  2


Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHcCC---eEEEEecceecCCCCCCCCCCCC
Q 029640          113 YKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESY  163 (190)
Q Consensus       113 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~vSS~~~~~~~~~~~~~e~~  163 (190)
                      ....+...+++|+.++.+++++|+++++   ++|++||.++|+.....+++|+.
T Consensus        75 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~  128 (292)
T TIGR01777        75 TEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEED  128 (292)
T ss_pred             CHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCccc
Confidence            2234556789999999999999999875   35556666789976666788874

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK05717 oxidoreductase; Validated

Probab=99.67  E-value=1e-15  Score=118.77  Aligned_cols=120  Identities=17%  Similarity=0.093  Sum_probs=89.1

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------C
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~   96 (190)
                      .+++++++||||+|+||+++++.|+++ |++|++++|+..........+  ...+.++.+|+.+...            .
T Consensus         7 ~~~~k~vlItG~sg~IG~~~a~~l~~~-g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   83 (255)
T PRK05717          7 GHNGRVALVTGAARGIGLGIAAWLIAE-GWQVVLADLDRERGSKVAKAL--GENAWFIAMDVADEAQVAAGVAEVLGQFG   83 (255)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHHc--CCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            357899999999999999999999999 889999887644332222222  2367889999998632            2


Q ss_pred             CcCEEEEccCCCCCcc------cccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceec
Q 029640           97 EVDQIYHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~  151 (190)
                      ++|+|||+||...+..      ..+.++..+++|+.++.++++++.+    .+.++|++||...+
T Consensus        84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~  148 (255)
T PRK05717         84 RLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR  148 (255)
T ss_pred             CCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc
Confidence            4899999999754321      1223457899999999999999853    23489999986644

>PRK07774 short chain dehydrogenase; Provisional

Probab=99.67  E-value=7.6e-16  Score=118.87  Aligned_cols=122  Identities=20%  Similarity=0.180  Sum_probs=89.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|...........+.. ...+.++.+|+.+...            .
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~-g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALARE-GASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFG   82 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            36789999999999999999999999 89999999865433222222221 2357788999998742            2


Q ss_pred             CcCEEEEccCCCCCc-------ccccCchhHHHHHHHHHHHHHHHHHHc----C-CeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPI-------FYKYNPVKTIKTNVIGTLNMLGLAKRV----G-ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~i~vSS~~~~~  152 (190)
                      .+|+|||+||.....       ...+..+..+++|+.++.++++++...    + .++|++||...|.
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~  150 (250)
T PRK07774         83 GIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL  150 (250)
T ss_pred             CCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC
Confidence            589999999965321       112234457899999999998887643    2 3899999977653

>PRK06196 oxidoreductase; Provisional

Probab=99.67  E-value=1.5e-15  Score=121.48  Aligned_cols=148  Identities=18%  Similarity=0.090  Sum_probs=99.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.|+.+........+   ..+.++.+|+.|...            .+
T Consensus        24 l~~k~vlITGasggIG~~~a~~L~~~-G~~Vv~~~R~~~~~~~~~~~l---~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~   99 (315)
T PRK06196         24 LSGKTAIVTGGYSGLGLETTRALAQA-GAHVIVPARRPDVAREALAGI---DGVEVVMLDLADLESVRAFAERFLDSGRR   99 (315)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh---hhCeEEEccCCCHHHHHHHHHHHHhcCCC
Confidence            47799999999999999999999999 899999998754433322222   247889999998642            35


Q ss_pred             cCEEEEccCCCCCcc--cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceecCCCCCCCCCCCCccCCCCC
Q 029640           98 VDQIYHLACPASPIF--YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~  170 (190)
                      +|+||||||......  ..+..+..+++|+.++.++++.+    ++.+ .++|++||.......    ...+......++
T Consensus       100 iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~----~~~~~~~~~~~~  175 (315)
T PRK06196        100 IDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSP----IRWDDPHFTRGY  175 (315)
T ss_pred             CCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCC----CCccccCccCCC
Confidence            999999999654321  22345677999999987776654    4444 499999997543211    111111111233


Q ss_pred             CcccchhhhhHHHHhhhh
Q 029640          171 GMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       171 ~~~~~y~~~~~sK~~~E~  188 (190)
                      .+...|   +.||+..+.
T Consensus       176 ~~~~~Y---~~SK~a~~~  190 (315)
T PRK06196        176 DKWLAY---GQSKTANAL  190 (315)
T ss_pred             ChHHHH---HHHHHHHHH
Confidence            333345   888987653

>PRK06194 hypothetical protein; Provisional

Probab=99.67  E-value=1e-15  Score=120.66  Aligned_cols=122  Identities=11%  Similarity=0.023  Sum_probs=88.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|+.|.+.            .
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g   82 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAAL-GMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFG   82 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            35689999999999999999999999 89999998865443333333322 3467889999998632            2


Q ss_pred             CcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcC-------CeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVG-------ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~-------~~~i~vSS~~~~~  152 (190)
                      ++|+|||+||.......    .+.+...+++|+.++.++++++    .+.+       .++|++||...+.
T Consensus        83 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~  153 (287)
T PRK06194         83 AVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLL  153 (287)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc
Confidence            48999999997654221    2334456899999999877764    3322       3799999977664

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.66  E-value=2.1e-15  Score=118.24  Aligned_cols=115  Identities=21%  Similarity=0.257  Sum_probs=85.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCcC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD   99 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~d   99 (190)
                      .++++||||+|+||+++++.|+++ |+.|+++.|+.+.... +.... ..++.++.+|++|...            .++|
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~-g~~v~~~~r~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   78 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLAR-GDRVAATVRRPDALDD-LKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRID   78 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH-HHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            378999999999999999999999 8899999886432221 11111 2468889999998642            3589


Q ss_pred             EEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecce
Q 029640          100 QIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSE  149 (190)
Q Consensus       100 ~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~  149 (190)
                      +|||+||.......    .+.....+++|+.++.++++++    ++.+. ++|++||..
T Consensus        79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~  137 (276)
T PRK06482         79 VVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEG  137 (276)
T ss_pred             EEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcc
Confidence            99999997653321    2234567889999999999887    44454 899999964

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=99.66  E-value=9e-16  Score=118.98  Aligned_cols=143  Identities=21%  Similarity=0.316  Sum_probs=99.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-c-----c-CCcCEEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-L-----L-IEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~-----~-~~~d~vi~  103 (190)
                      .+|+|+||||+|+||+.+++.|+++ +++|+++.|+.........   ....+.++.+|+.+. .     + .++|+|||
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~   91 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAK-GFAVKAGVRDVDKAKTSLP---QDPSLQIVRADVTEGSDKLVEAIGDDSDAVIC   91 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhcc---cCCceEEEEeeCCCCHHHHHHHhhcCCCEEEE
Confidence            4689999999999999999999998 8999998886543222111   123688899999873 1     2 36999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHH
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIM  182 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~s  182 (190)
                      ++|....    .++...+++|..++.++++++++.+. |+|++||..+|+...+.+..+.       +...+.|..+..+
T Consensus        92 ~~g~~~~----~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~~~-------~~~~~~~~~~~~~  160 (251)
T PLN00141         92 ATGFRRS----FDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQILNPA-------YIFLNLFGLTLVA  160 (251)
T ss_pred             CCCCCcC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccccCcc-------hhHHHHHHHHHHH
Confidence            9875321    12233457888999999999998886 8999999999985433232221       1112334444566


Q ss_pred             HHhhhh
Q 029640          183 KLIGEL  188 (190)
Q Consensus       183 K~~~E~  188 (190)
                      |...|.
T Consensus       161 k~~~e~  166 (251)
T PLN00141        161 KLQAEK  166 (251)
T ss_pred             HHHHHH
Confidence            776663

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.65  E-value=2.4e-15  Score=115.99  Aligned_cols=122  Identities=16%  Similarity=0.082  Sum_probs=90.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.|+..........+.....+.++.+|+.+...            .+
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAE-GARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGS   81 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            36789999999999999999999999 889999999765444333333223468899999998643            25


Q ss_pred             cCEEEEccCCCCCcc-----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~~  152 (190)
                      +|+|||++|......     ..+.++..+++|+.++..+++.+..    .+. ++|++||...+.
T Consensus        82 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~  146 (251)
T PRK07231         82 VDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLR  146 (251)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcC
Confidence            899999998643221     2233556799999998887776643    443 899999977655

>PLN02253 xanthoxin dehydrogenase

Probab=99.65  E-value=2.3e-15  Score=118.27  Aligned_cols=119  Identities=23%  Similarity=0.153  Sum_probs=88.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+....++.++++|+.|...            .+
T Consensus        16 l~~k~~lItGas~gIG~~la~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~   94 (280)
T PLN02253         16 LLGKVALVTGGATGIGESIVRLFHKH-GAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGT   94 (280)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            46799999999999999999999999 899999988654333323333223468899999998642            25


Q ss_pred             cCEEEEccCCCCCc---c---cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecce
Q 029640           98 VDQIYHLACPASPI---F---YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSE  149 (190)
Q Consensus        98 ~d~vi~~ag~~~~~---~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~  149 (190)
                      +|+||||||.....   .   ..+.++..+++|+.++.++++++..    .+ .++|++||..
T Consensus        95 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~  157 (280)
T PLN02253         95 LDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVA  157 (280)
T ss_pred             CCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChh
Confidence            99999999965321   1   1234567899999999998887753    22 3789998865

>CHL00194 ycf39 Ycf39; Provisional

Probab=99.65  E-value=1.4e-15  Score=121.80  Aligned_cols=106  Identities=20%  Similarity=0.270  Sum_probs=84.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~  107 (190)
                      |+|+||||+||||+++++.|+++ |++|+++.|+..... .+.    ..+++++.+|+.|..     +.++|+|||+++.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~-g~~V~~l~R~~~~~~-~l~----~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~   74 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDE-GYQVRCLVRNLRKAS-FLK----EWGAELVYGDLSLPETLPPSFKGVTAIIDASTS   74 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCeEEEEEcChHHhh-hHh----hcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence            58999999999999999999999 899999998643221 111    236889999999864     4579999999753


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecce
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE  149 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~  149 (190)
                      .     ..++...+++|+.++.+++++|++.++ |+|++||.+
T Consensus        75 ~-----~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~  112 (317)
T CHL00194         75 R-----PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILN  112 (317)
T ss_pred             C-----CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecccc
Confidence            2     123445778899999999999999997 899999854

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=99.64  E-value=2.1e-15  Score=116.43  Aligned_cols=122  Identities=17%  Similarity=0.175  Sum_probs=94.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC--CceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH--PRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||++.||.++++.|+++ |++++++.|+.+.......++...  ..++.+.+|+++...            
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~-g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~   82 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARR-GYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG   82 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence            46789999999999999999999999 899999999877776666655443  467889999998642            


Q ss_pred             CCcCEEEEccCCCCCc-ccc---cCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPI-FYK---YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~-~~~---~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      ..+|++|||||..... +.+   +..++.+++|+.++..+.++.    .+++. +||.++|...|-
T Consensus        83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~  148 (265)
T COG0300          83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLI  148 (265)
T ss_pred             CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcC
Confidence            2599999999976643 222   334467999999987776555    44554 899999977554

>PRK06180 short chain dehydrogenase; Provisional

Probab=99.64  E-value=5.6e-15  Score=116.07  Aligned_cols=119  Identities=16%  Similarity=0.035  Sum_probs=86.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      ++++++||||+|+||+++++.|+++ |++|+++.|+.+.... +... ...++..+.+|+.|.+.            .++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~-l~~~-~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~   79 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAA-GHRVVGTVRSEAARAD-FEAL-HPDRALARLLDVTDFDAIDAVVADAEATFGPI   79 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhC-cCEEEEEeCCHHHHHH-HHhh-cCCCeeEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            5688999999999999999999999 8999999986543221 1111 12367888999998642            258


Q ss_pred             CEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      |+|||+||........    +.....+++|+.++.++++++.    +.+. ++|++||...+.
T Consensus        80 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~  142 (277)
T PRK06180         80 DVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLI  142 (277)
T ss_pred             CEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccC
Confidence            9999999975432222    2234568999999999998853    3343 899999976543

>PRK09186 flagellin modification protein A; Provisional

Probab=99.64  E-value=5.6e-15  Score=114.39  Aligned_cols=122  Identities=20%  Similarity=0.211  Sum_probs=85.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+........+.   ....+.++.+|+.|.+.           
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~   80 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEA-GGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEK   80 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence            46799999999999999999999999 8899999887654433333321   12356677899998642           


Q ss_pred             -CCcCEEEEccCCCCC----cc---cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           96 -IEVDQIYHLACPASP----IF---YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~----~~---~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                       ..+|+|||||+....    ..   ..+.....+++|+.++..+++++    ++.+. ++|++||...+.
T Consensus        81 ~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~  150 (256)
T PRK09186         81 YGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVV  150 (256)
T ss_pred             cCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhc
Confidence             238999999974321    11   11234456888988887666555    34454 899999976543

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=99.64  E-value=5.6e-15  Score=114.76  Aligned_cols=122  Identities=20%  Similarity=0.111  Sum_probs=89.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||.++++.|+++ |++|+++.|+....+.....+.. ..++.++.+|+.|...            .
T Consensus        10 ~~~k~ilItGa~g~IG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~   88 (259)
T PRK08213         10 LSGKTALVTGGSRGLGLQIAEALGEA-GARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFG   88 (259)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46799999999999999999999998 88999998865433322222221 2367889999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc-----CC-eEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-----GA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~-----~~-~~i~vSS~~~~~  152 (190)
                      .+|+|||+||......    ..+..++.+++|+.++.++++++...     +. ++|++||...+.
T Consensus        89 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~  154 (259)
T PRK08213         89 HVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLG  154 (259)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhcc
Confidence            5899999998643221    12234567889999999999987554     44 899999976544

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.64  E-value=3.1e-15  Score=116.16  Aligned_cols=121  Identities=18%  Similarity=0.023  Sum_probs=87.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++|||++|+||+++++.|+++ |++|+++.|+.+........+.. ...+.++++|+.+...            .
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   83 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARA-GAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFG   83 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            35789999999999999999999999 88999999876544433333322 2357788999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHH----HHHHHHHH-HHcCC-eEEEEecceec
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIG----TLNMLGLA-KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~----~~~l~~~~-~~~~~-~~i~vSS~~~~  151 (190)
                      .+|+||||||......    ..+..+..+++|+.+    +..+++.+ +..+. ++|++||...+
T Consensus        84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~  148 (262)
T PRK13394         84 SVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSH  148 (262)
T ss_pred             CCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhc
Confidence            4899999999754321    122345668899999    45556666 55555 89999996543

>PRK07806 short chain dehydrogenase; Provisional

Probab=99.64  E-value=2.8e-15  Score=115.62  Aligned_cols=117  Identities=16%  Similarity=0.130  Sum_probs=86.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh-hhhhc-CCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWIG-HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~------------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.|+.......+ ..+.. ..++.++.+|+.+.+.            
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~-G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGA-GAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEF   82 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHC-CCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            35689999999999999999999999 889988888643222221 11111 2357889999998642            


Q ss_pred             CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640           96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      .++|+|||+||....  ....+...+++|+.++.++++.+.+.   +.++|++||..
T Consensus        83 ~~~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~  137 (248)
T PRK07806         83 GGLDALVLNASGGME--SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQ  137 (248)
T ss_pred             CCCcEEEECCCCCCC--CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCch
Confidence            258999999985432  22345667899999999999999764   23899999954

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=99.64  E-value=5.5e-15  Score=111.59  Aligned_cols=117  Identities=19%  Similarity=0.044  Sum_probs=92.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      .+|.++||||++.||.++++.|.+. |++|++..|+.+..+....++.+ ..+..+..|++|...            .++
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~-G~~vvl~aRR~drL~~la~~~~~-~~~~~~~~DVtD~~~~~~~i~~~~~~~g~i   82 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEA-GAKVVLAARREERLEALADEIGA-GAALALALDVTDRAAVEAAIEALPEEFGRI   82 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHC-CCeEEEEeccHHHHHHHHHhhcc-CceEEEeeccCCHHHHHHHHHHHHHhhCcc
Confidence            5688999999999999999999999 89999999987766655555543 578899999999742            359


Q ss_pred             CEEEEccCCCCCcc-c---ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecce
Q 029640           99 DQIYHLACPASPIF-Y---KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~~-~---~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~  149 (190)
                      |++|||||..-... .   .++++..+++|+.|..+..++.    .+++. .+|.+||..
T Consensus        83 DiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiA  142 (246)
T COG4221          83 DILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIA  142 (246)
T ss_pred             cEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccc
Confidence            99999999765422 1   2345667999999999888776    33443 999999966

>PRK08263 short chain dehydrogenase; Provisional

Probab=99.63  E-value=4.3e-15  Score=116.54  Aligned_cols=119  Identities=17%  Similarity=0.125  Sum_probs=88.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      ++++++||||+|+||+++++.|+++ |++|++++|+...........  ...+..+++|+.+...            .++
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   78 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALER-GDRVVATARDTATLADLAEKY--GDRLLPLALDVTDRAAVFAAVETAVEHFGRL   78 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhc--cCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5688999999999999999999999 899999988644322211111  2367888999998632            358


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      |+||||||......    ..+...+.+++|+.++.++++.+    ++.+. ++|++||...+.
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~  141 (275)
T PRK08263         79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGIS  141 (275)
T ss_pred             CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcC
Confidence            99999999765322    22345667999999998888776    44454 899999977654

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.63  E-value=3.5e-15  Score=125.97  Aligned_cols=120  Identities=13%  Similarity=0.155  Sum_probs=92.2

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh----------cCCceEEEeccccccc----
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----------GHPRFELIRHDVTEPL----   94 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~D~~~~~----   94 (190)
                      ...+++++||||+|+||+++++.|+++ |++|+++.|+..........+.          ...++.++.+|+.+.+    
T Consensus        77 ~~~gKvVLVTGATGgIG~aLAr~LLk~-G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~  155 (576)
T PLN03209         77 TKDEDLAFVAGATGKVGSRTVRELLKL-GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP  155 (576)
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence            346789999999999999999999999 8999999987554332222111          0135788999999864    


Q ss_pred             -cCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceec
Q 029640           95 -LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY  151 (190)
Q Consensus        95 -~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~  151 (190)
                       +.++|+|||++|.....  ..+....+++|+.++.++++++...++ |||++||.+++
T Consensus       156 aLggiDiVVn~AG~~~~~--v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~  212 (576)
T PLN03209        156 ALGNASVVICCIGASEKE--VFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTN  212 (576)
T ss_pred             HhcCCCEEEEcccccccc--ccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhc
Confidence             45799999999864321  123456789999999999999998886 99999997753

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=99.63  E-value=3.8e-15  Score=114.79  Aligned_cols=121  Identities=25%  Similarity=0.165  Sum_probs=90.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+..........+.. ...+.++.+|+.|...            .
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAAD-GAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFG   82 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            36789999999999999999999999 88999999975443333333322 2358889999998632            2


Q ss_pred             CcCEEEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029640           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                      .+|+|||++|...+.    ...+.+...+++|+.++.++++.+.    +.+. ++|++||...+
T Consensus        83 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~  146 (251)
T PRK12826         83 RLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGP  146 (251)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhh
Confidence            589999999866541    1223445678999999999988873    3343 89999997655

>PRK07024 short chain dehydrogenase; Provisional

Probab=99.63  E-value=4.1e-15  Score=115.54  Aligned_cols=119  Identities=12%  Similarity=0.066  Sum_probs=86.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCcC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD   99 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~d   99 (190)
                      +++++||||+|+||+++++.|+++ |++|++++|+.+........+....++.++.+|+++.+.            ..+|
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id   80 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQ-GATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPD   80 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence            478999999999999999999999 889999998754433222222112268899999998632            2489


Q ss_pred             EEEEccCCCCCccc-----ccCchhHHHHHHHHHHHHHHH----HHHcCC-eEEEEecceec
Q 029640          100 QIYHLACPASPIFY-----KYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVY  151 (190)
Q Consensus       100 ~vi~~ag~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~----~~~~~~-~~i~vSS~~~~  151 (190)
                      +|||+||.......     .+..+..+++|+.++.++++.    +++.+. ++|++||...+
T Consensus        81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~  142 (257)
T PRK07024         81 VVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGV  142 (257)
T ss_pred             EEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhc
Confidence            99999996543211     123556799999999987764    444544 89999986643

>PRK07890 short chain dehydrogenase; Provisional

Probab=99.63  E-value=5.7e-15  Score=114.47  Aligned_cols=121  Identities=16%  Similarity=0.120  Sum_probs=90.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|+++.+.            .
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARA-GADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFG   81 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999999 88999999876543333332221 2467889999998642            3


Q ss_pred             CcCEEEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceec
Q 029640           97 EVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~  151 (190)
                      ++|+|||+||.....     ...+.++..+++|+.++..+++++..    .+.++|++||...+
T Consensus        82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~  145 (258)
T PRK07890         82 RVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLR  145 (258)
T ss_pred             CccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhc
Confidence            589999999864321     12234556799999999999988864    23489999996543

>PRK12827 short chain dehydrogenase; Provisional

Probab=99.63  E-value=1.2e-14  Score=111.79  Aligned_cols=122  Identities=20%  Similarity=0.138  Sum_probs=89.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh----h-cCCceEEEecccccccc---------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW----I-GHPRFELIRHDVTEPLL---------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~----~-~~~~~~~~~~D~~~~~~---------   95 (190)
                      +++|+++||||+|+||+++++.|+++ |++|+++.|...........+    . ....+.++.+|+.+...         
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   82 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLAAD-GADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGV   82 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            36789999999999999999999999 888988776543333222221    1 12468889999998642         


Q ss_pred             ---CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH-----HcCC-eEEEEecceecC
Q 029640           96 ---IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK-----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ---~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~-~~i~vSS~~~~~  152 (190)
                         .++|+|||+||......    ..+.....+++|+.++.++++++.     +.+. ++|++||...+.
T Consensus        83 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~  152 (249)
T PRK12827         83 EEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVR  152 (249)
T ss_pred             HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcC
Confidence               35899999999765321    122345678999999999999887     3443 899999977554

>PRK07814 short chain dehydrogenase; Provisional

Probab=99.62  E-value=7.2e-15  Score=114.56  Aligned_cols=119  Identities=13%  Similarity=0.117  Sum_probs=89.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||.++++.|+++ |++|++++|+.+........+.. ..++.++.+|+.++..            .
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~-G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   86 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEA-GADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFG   86 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999 88999999975443332222211 3468889999998743            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH-----cC-CeEEEEecce
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR-----VG-ARILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~-----~~-~~~i~vSS~~  149 (190)
                      ++|+|||+||......    ..+.....+++|+.++.++++++..     .+ .++|++||..
T Consensus        87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~  149 (263)
T PRK07814         87 RLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTM  149 (263)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcccc
Confidence            6899999998644321    1234556799999999999998863     23 3899999854

>PRK05866 short chain dehydrogenase; Provisional

Probab=99.62  E-value=1.2e-14  Score=115.32  Aligned_cols=122  Identities=16%  Similarity=0.104  Sum_probs=88.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------cC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ...+.++.+|+.|.+            ..
T Consensus        38 ~~~k~vlItGasggIG~~la~~La~~-G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  116 (293)
T PRK05866         38 LTGKRILLTGASSGIGEAAAEQFARR-GATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIG  116 (293)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46789999999999999999999999 89999999975443332222211 245778899999864            23


Q ss_pred             CcCEEEEccCCCCCcccc------cCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIFYK------YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~~------~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      ++|+||||||........      +..+..+++|+.++.++++.+.    +.+. ++|++||.+.+.
T Consensus       117 ~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  183 (293)
T PRK05866        117 GVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLS  183 (293)
T ss_pred             CCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcC
Confidence            699999999976432211      2234578999999888877653    4444 899999966543

>PRK12746 short chain dehydrogenase; Provisional

Probab=99.62  E-value=8.6e-15  Score=113.29  Aligned_cols=121  Identities=17%  Similarity=0.129  Sum_probs=87.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhhc-CCceEEEecccccccc-------------
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-------------   95 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~-------------   95 (190)
                      ++++++|||++|+||+++++.|+++ |+.|.++ .|+.+........+.. ...+.++.+|+.|...             
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~-G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~   83 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLAND-GALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQ   83 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence            5689999999999999999999999 7888775 5544332222222221 2467889999998642             


Q ss_pred             -----CCcCEEEEccCCCCCcccccC----chhHHHHHHHHHHHHHHHHHHc--C-CeEEEEecceecC
Q 029640           96 -----IEVDQIYHLACPASPIFYKYN----PVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVYG  152 (190)
Q Consensus        96 -----~~~d~vi~~ag~~~~~~~~~~----~~~~~~~n~~~~~~l~~~~~~~--~-~~~i~vSS~~~~~  152 (190)
                           .++|+|||+||........+.    ....+++|+.++.++++.+.+.  . .++|++||..++.
T Consensus        84 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~  152 (254)
T PRK12746         84 IRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRL  152 (254)
T ss_pred             cccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcC
Confidence                 258999999997554322222    2456789999999999988653  2 3899999977654

>PRK06138 short chain dehydrogenase; Provisional

Probab=99.62  E-value=7.1e-15  Score=113.47  Aligned_cols=121  Identities=17%  Similarity=0.074  Sum_probs=89.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+........+....++.++++|+.|...            .+
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~   81 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFARE-GARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGR   81 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHC-CCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            36789999999999999999999999 899999998755433333333223468899999998642            36


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      +|+|||++|......    ..+..+..+++|+.++.++.+.+    ++.+. ++|++||...+
T Consensus        82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~  144 (252)
T PRK06138         82 LDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLAL  144 (252)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhc
Confidence            999999999654322    12234456899999998776655    44454 89999997643

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.61  E-value=1.5e-14  Score=111.10  Aligned_cols=121  Identities=19%  Similarity=0.138  Sum_probs=88.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc------------C
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~------------~   96 (190)
                      ++++++||||+|+||+++++.|+++ |+.|+++.|+.......+....  ...++.++.+|+.+...            .
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~   83 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARA-GADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFG   83 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcC
Confidence            5689999999999999999999999 8888776665443322222211  13468889999998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      ++|+|||+||......    ..+.....+++|+.++.++++.+    ++.+. ++|++||...+.
T Consensus        84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~  148 (249)
T PRK12825         84 RIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLP  148 (249)
T ss_pred             CCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence            5899999999654432    12234567899999999998887    34454 899999977653

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=99.61  E-value=2.2e-14  Score=111.20  Aligned_cols=119  Identities=20%  Similarity=0.145  Sum_probs=88.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+........+.. ..++.++++|+.+...            .
T Consensus         8 ~~~k~vlItGa~g~iG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   86 (255)
T PRK07523          8 LTGRRALVTGSSQGIGYALAEGLAQA-GAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIG   86 (255)
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999999 88999998875433332222222 2357889999998642            3


Q ss_pred             CcCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHHHc----CC-eEEEEecce
Q 029640           97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~vSS~~  149 (190)
                      .+|+|||+||...+....    +..+..+.+|+.++.++++.+.+.    +. ++|++||..
T Consensus        87 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~  148 (255)
T PRK07523         87 PIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQ  148 (255)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccch
Confidence            589999999975432221    223557889999999999888643    33 899999854

>PRK05993 short chain dehydrogenase; Provisional

Probab=99.61  E-value=9.8e-15  Score=114.71  Aligned_cols=114  Identities=18%  Similarity=0.154  Sum_probs=83.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------------CC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------------IE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------------~~   97 (190)
                      ++++++||||+|+||+++++.|+++ |++|++++|+.+...    .+. ..++.++.+|+.|.+.             .+
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~-G~~Vi~~~r~~~~~~----~l~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~   76 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSD-GWRVFATCRKEEDVA----ALE-AEGLEAFQLDYAEPESIAALVAQVLELSGGR   76 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHH----HHH-HCCceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999999999999999999998 899999998644322    222 2357888999998631             25


Q ss_pred             cCEEEEccCCCCCcccc----cCchhHHHHHHHHHH----HHHHHHHHcCC-eEEEEeccee
Q 029640           98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTL----NMLGLAKRVGA-RILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~----~l~~~~~~~~~-~~i~vSS~~~  150 (190)
                      +|+||||||........    +.....+++|+.++.    .+++.+++.+. ++|++||...
T Consensus        77 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~  138 (277)
T PRK05993         77 LDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILG  138 (277)
T ss_pred             ccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhh
Confidence            89999999865543222    223457899999954    55566666665 8999999653

>PRK06179 short chain dehydrogenase; Provisional

Probab=99.61  E-value=2.4e-14  Score=111.84  Aligned_cols=114  Identities=24%  Similarity=0.196  Sum_probs=86.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      ++++++||||+|+||+++++.|+++ |++|+++.|+......       ..++.++++|+.|.+.            ..+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~-g~~V~~~~r~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~   74 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARA-GYRVFGTSRNPARAAP-------IPGVELLELDVTDDASVQAAVDEVIARAGRI   74 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeCChhhccc-------cCCCeeEEeecCCHHHHHHHHHHHHHhCCCC
Confidence            4678999999999999999999999 8999999986543221       2367889999998642            358


Q ss_pred             CEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        99 d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      |+||||||.......    .+..+..+++|+.++.++++.+    ++.+. ++|++||...+.
T Consensus        75 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~  137 (270)
T PRK06179         75 DVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFL  137 (270)
T ss_pred             CEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccC
Confidence            999999997543221    2234567999999998888775    44554 899999966543

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=99.60  E-value=1.7e-14  Score=106.39  Aligned_cols=101  Identities=33%  Similarity=0.532  Sum_probs=84.0

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCCCC
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACPAS  109 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~~~  109 (190)
                      |+|+||+|++|+.+++.|+++ +++|+++.|++.....       ..+++++.+|+.|..     +.++|+||+++|...
T Consensus         1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~~~~~-------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~   72 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPSKAED-------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP   72 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGGGHHH-------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred             eEEECCCChHHHHHHHHHHHC-CCEEEEEecCchhccc-------ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence            789999999999999999999 7999999997553332       568999999999874     357999999996432


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCC
Q 029640          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV  156 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~  156 (190)
                      .             +...+.++++++++.++ |+|++|+.++|.....
T Consensus        73 ~-------------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~  107 (183)
T PF13460_consen   73 K-------------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPG  107 (183)
T ss_dssp             T-------------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTS
T ss_pred             c-------------cccccccccccccccccccceeeeccccCCCCCc
Confidence            2             16677899999999997 9999999999885444

...

>PRK08267 short chain dehydrogenase; Provisional

Probab=99.60  E-value=1.7e-14  Score=112.18  Aligned_cols=116  Identities=22%  Similarity=0.081  Sum_probs=86.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-------------cCCc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------------LIEV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-------------~~~~   98 (190)
                      |++++||||+|+||+++++.|+++ |+.|.+++|+.+...+....+ ....+.++++|+.+..             ..++
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAE-GWRVGAYDINEAGLAALAAEL-GAGNAWTGALDVTDRAAWDAALADFAAATGGRL   78 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            478999999999999999999999 899999988654333222222 2346889999999853             2357


Q ss_pred             CEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecce
Q 029640           99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~  149 (190)
                      |+||||||.......    .+..+..+++|+.++.++++++.+    .+ .++|++||..
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~  138 (260)
T PRK08267         79 DVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSAS  138 (260)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchh
Confidence            999999997653221    223556799999999999888743    33 4899999865

>PRK06914 short chain dehydrogenase; Provisional

Probab=99.60  E-value=2.3e-14  Score=112.59  Aligned_cols=119  Identities=18%  Similarity=0.131  Sum_probs=87.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc-----------C
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL-----------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~-----------~   96 (190)
                      ++++++||||+|+||+++++.|+++ |++|++++|+.+..........   ...++.++.+|+.|.+.           .
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~   80 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKK-GYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG   80 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence            5688999999999999999999999 8999999887544333222221   12468899999998642           2


Q ss_pred             CcCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEeccee
Q 029640           97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEV  150 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~  150 (190)
                      ++|+||||||...+....    +.....+++|+.++.++++.+    ++.+. ++|++||...
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~  143 (280)
T PRK06914         81 RIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISG  143 (280)
T ss_pred             CeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccc
Confidence            589999999865543222    234456889999998888775    44554 8999998643

>PLN00016 RNA-binding protein; Provisional

Probab=99.60  E-value=9.2e-15  Score=119.79  Aligned_cols=114  Identities=20%  Similarity=0.256  Sum_probs=86.5

Q ss_pred             CCCEEEEE----cccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh-------hhhhhcCCceEEEeccccccc----c
Q 029640           31 SNMRILVT----GGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-------LRKWIGHPRFELIRHDVTEPL----L   95 (190)
Q Consensus        31 ~~~~vlIt----G~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~----~   95 (190)
                      ++++|+||    ||+||||+++++.|+++ |++|+++.|+.......       +..+. ..++.++.+|+.|..    .
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~-G~~V~~l~R~~~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~~~~~  128 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKA-GHEVTLFTRGKEPSQKMKKEPFSRFSELS-SAGVKTVWGDPADVKSKVAG  128 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHC-CCEEEEEecCCcchhhhccCchhhhhHhh-hcCceEEEecHHHHHhhhcc
Confidence            45789999    99999999999999999 89999999976532110       11111 235788999998732    2


Q ss_pred             CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCC
Q 029640           96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDES  162 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~  162 (190)
                      .++|+|||+++.                +..++.+++++|++.++ ++||+||.++|+.....++.|+
T Consensus       129 ~~~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~  180 (378)
T PLN00016        129 AGFDVVYDNNGK----------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEG  180 (378)
T ss_pred             CCccEEEeCCCC----------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCC
Confidence            369999999752                13357789999999997 8999999999997655566666

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=99.60  E-value=2.4e-14  Score=111.22  Aligned_cols=121  Identities=15%  Similarity=0.074  Sum_probs=84.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------cC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.. .......+.. ...+.++.+|+.+.+            ..
T Consensus         6 ~~~k~vlVtGas~gIG~~la~~l~~~-G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (260)
T PRK12823          6 FAGKVVVVTGAAQGIGRGVALRAAAE-GARVVLVDRSEL-VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFG   83 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            46789999999999999999999999 889999988632 1122222211 246778899999853            13


Q ss_pred             CcCEEEEccCCCCC--c---ccccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           97 EVDQIYHLACPASP--I---FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~--~---~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      ++|+||||||....  .   ...+.....+++|+.++..+++.+    ++.+. ++|++||...++
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~  149 (260)
T PRK12823         84 RIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRG  149 (260)
T ss_pred             CCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccC
Confidence            58999999985321  1   122334566889998887665544    44554 899999977653

>PRK06128 oxidoreductase; Provisional

Probab=99.60  E-value=3e-14  Score=113.29  Aligned_cols=122  Identities=16%  Similarity=0.110  Sum_probs=89.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhh-hhh-cCCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLR-KWI-GHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~-~~~-~~~~~~~~~~D~~~~~~-----------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++..++.+... ..+. .+. ...++.++.+|+.+...           
T Consensus        53 l~~k~vlITGas~gIG~~~a~~l~~~-G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  131 (300)
T PRK06128         53 LQGRKALITGADSGIGRATAIAFARE-GADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE  131 (300)
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHHHc-CCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999 888888776543211 1121 111 12467888999998632           


Q ss_pred             -CCcCEEEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecC
Q 029640           96 -IEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~  152 (190)
                       .++|+||||||.....     ...+.++..+++|+.++.++++++...   +.++|++||...|.
T Consensus       132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~  197 (300)
T PRK06128        132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQ  197 (300)
T ss_pred             hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccC
Confidence             3699999999964321     123446678999999999999998753   34899999987764

>PRK09135 pteridine reductase; Provisional

Probab=99.59  E-value=1.6e-14  Score=111.17  Aligned_cols=138  Identities=17%  Similarity=0.121  Sum_probs=94.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhh-hh--cCCceEEEecccccccc------------
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-WI--GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~-~~--~~~~~~~~~~D~~~~~~------------   95 (190)
                      .+++++|||++|+||+++++.|+++ |++|+++.|+.......+.. +.  ....+.++.+|+.+...            
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   83 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAA-GYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF   83 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5588999999999999999999999 89999998864432222211 11  12357889999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc----CCeEEEEecceecCCCCCCCCCCCCccCC
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLVHPQDESYWGNV  167 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~vSS~~~~~~~~~~~~~e~~~~~~  167 (190)
                      .++|+|||+||......    ..+.++.++++|+.++.++++++.+.    +..++.+++..           +.     
T Consensus        84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~-----  147 (249)
T PRK09135         84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIH-----------AE-----  147 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChh-----------hc-----
Confidence            25899999998644321    12345678999999999999998642    22555555421           11     


Q ss_pred             CCCCcccchhhhhHHHHhhhh
Q 029640          168 NPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       168 ~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      .+..+...|   +.+|...|.
T Consensus       148 ~~~~~~~~Y---~~sK~~~~~  165 (249)
T PRK09135        148 RPLKGYPVY---CAAKAALEM  165 (249)
T ss_pred             CCCCCchhH---HHHHHHHHH
Confidence            233334566   888988774

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.59  E-value=2.6e-14  Score=110.61  Aligned_cols=122  Identities=20%  Similarity=0.070  Sum_probs=88.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++|||++|+||+++++.|+++ |++|+++.|+..........+. ...++.++.+|+.+...            .
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   80 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKE-GAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG   80 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46789999999999999999999999 8999999997655444333332 13468889999998642            2


Q ss_pred             CcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      .+|+|||+||.......    ....+..+++|+.++..+++.+    ++.+. ++|++||...+.
T Consensus        81 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~  145 (258)
T PRK12429         81 GVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLV  145 (258)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhcc
Confidence            58999999986544221    1224456788999866655544    44555 899999976443

>PRK06182 short chain dehydrogenase; Validated

Probab=99.59  E-value=3e-14  Score=111.64  Aligned_cols=113  Identities=17%  Similarity=0.105  Sum_probs=83.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      .+++++|||++|+||+++++.|+++ |++|+++.|+.+.    +..+. ..++.++.+|++|.+.            .++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~-G~~V~~~~r~~~~----l~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~i   75 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQ-GYTVYGAARRVDK----MEDLA-SLGVHPLSLDVTDEASIKAAVDTIIAEEGRI   75 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHH----HHHHH-hCCCeEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            5689999999999999999999998 8999999886433    22222 1357889999998642            269


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHH----HHHHHcCC-eEEEEecce
Q 029640           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNML----GLAKRVGA-RILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~----~~~~~~~~-~~i~vSS~~  149 (190)
                      |+|||+||......    ..+.++..+++|+.++..++    ..+++.+. ++|++||..
T Consensus        76 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~  135 (273)
T PRK06182         76 DVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMG  135 (273)
T ss_pred             CEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchh
Confidence            99999999754321    22345667899998865554    45556654 899999965

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.59  E-value=1.4e-14  Score=115.29  Aligned_cols=121  Identities=21%  Similarity=0.168  Sum_probs=97.0

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc----------
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~----------   95 (190)
                      ...+++++|||++..||.++++.|+.+ |.+|+...|+.+........+.   ....+.+.++|+.+...          
T Consensus        32 ~~~~~~~vVTGansGIG~eta~~La~~-Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~  110 (314)
T KOG1208|consen   32 DLSGKVALVTGATSGIGFETARELALR-GAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK  110 (314)
T ss_pred             cCCCcEEEEECCCCchHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence            357799999999999999999999999 7999999998755554444443   35688889999998642          


Q ss_pred             --CCcCEEEEccCCCCCcc--cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEeccee
Q 029640           96 --IEVDQIYHLACPASPIF--YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEV  150 (190)
Q Consensus        96 --~~~d~vi~~ag~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~  150 (190)
                        ...|++|||||++.+..  .++..+..+.+|+.|.+.+.+.+    +... .|+|++||...
T Consensus       111 ~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~  174 (314)
T KOG1208|consen  111 KEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG  174 (314)
T ss_pred             cCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc
Confidence              35999999999888654  34567889999999998887665    4443 59999999775

>PRK07063 short chain dehydrogenase; Provisional

Probab=99.59  E-value=2.5e-14  Score=111.18  Aligned_cols=121  Identities=16%  Similarity=0.075  Sum_probs=89.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc---CCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~-----------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+..   ..++.++++|+.+++.           
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFARE-GAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA   83 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            36799999999999999999999999 88999999876544443333322   3468889999998642           


Q ss_pred             -CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecceec
Q 029640           96 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~~  151 (190)
                       .++|+||||||......    ..+..+..+++|+.++.++++++..    .+ .++|++||...+
T Consensus        84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  149 (260)
T PRK07063         84 FGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAF  149 (260)
T ss_pred             hCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhc
Confidence             35999999999643211    1234556789999999988887643    33 389999996543

>PRK06500 short chain dehydrogenase; Provisional

Probab=99.59  E-value=3.2e-14  Score=109.66  Aligned_cols=116  Identities=17%  Similarity=0.126  Sum_probs=85.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      ++++++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++++|+.+...            .++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAE-GARVAITGRDPASLEAARAEL--GESALVIRADAGDVAAQKALAQALAEAFGRL   81 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEecCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999999999 889999988643322222222  2367888999987532            358


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH---cCCeEEEEecce
Q 029640           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR---VGARILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~i~vSS~~  149 (190)
                      |+|||+||......    ..+.++..+++|+.++.++++++.+   ...++|++||..
T Consensus        82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~  139 (249)
T PRK06500         82 DAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSIN  139 (249)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechH
Confidence            99999998654321    2234557899999999999999974   234788777744

>PRK07478 short chain dehydrogenase; Provisional

Probab=99.59  E-value=3.2e-14  Score=110.23  Aligned_cols=120  Identities=14%  Similarity=0.049  Sum_probs=87.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------cCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LIE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~~~   97 (190)
                      ++++++||||+|+||.++++.|+++ |++|++++|+.+.......++.. ..++.++.+|+.+..            ..+
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFARE-GAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG   83 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            5789999999999999999999999 88999999875544333333321 246788899999863            236


Q ss_pred             cCEEEEccCCCCC--cc---cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASP--IF---YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~--~~---~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      +|+|||+||....  ..   ..+..+..+++|+.++..+.+.+    .+.+. ++|++||...+
T Consensus        84 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~  147 (254)
T PRK07478         84 LDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGH  147 (254)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhh
Confidence            9999999996532  11   12335567999999888776654    33443 89999996644

>PRK05876 short chain dehydrogenase; Provisional

Probab=99.59  E-value=2.9e-14  Score=112.06  Aligned_cols=122  Identities=15%  Similarity=0.074  Sum_probs=89.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|++..|+.+........+.. ..++.++.+|+.|...            .
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~-G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARR-GARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLG   82 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            46789999999999999999999999 88999988875444333333322 2357888999998642            2


Q ss_pred             CcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHH----HcC--CeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~i~vSS~~~~~  152 (190)
                      ++|+||||||.......    .+..+..+++|+.++.++++.+.    +.+  .++|++||...+.
T Consensus        83 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~  148 (275)
T PRK05876         83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLV  148 (275)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhcc
Confidence            58999999997543221    22344578999999999988874    333  4899999976553

>PRK06398 aldose dehydrogenase; Validated

Probab=99.59  E-value=6.9e-14  Score=108.82  Aligned_cols=112  Identities=21%  Similarity=0.167  Sum_probs=85.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+....          ..+.++++|+.++..            .+
T Consensus         4 l~gk~vlItGas~gIG~~ia~~l~~~-G~~Vi~~~r~~~~~----------~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   72 (258)
T PRK06398          4 LKDKVAIVTGGSQGIGKAVVNRLKEE-GSNVINFDIKEPSY----------NDVDYFKVDVSNKEQVIKGIDYVISKYGR   72 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCcccc----------CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999 89999998865432          257889999998632            35


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecceecC
Q 029640           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~~~  152 (190)
                      +|+||||||.......    .+..+..+++|+.++.++++++.+    .+ .++|++||...+.
T Consensus        73 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  136 (258)
T PRK06398         73 IDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFA  136 (258)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhcc
Confidence            9999999996543221    123445689999999998877743    33 3899999976543

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.58  E-value=3.4e-14  Score=110.17  Aligned_cols=118  Identities=22%  Similarity=0.167  Sum_probs=84.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |+.|+++.++.+.....+.   . .++.++.+|+.|+..            .+
T Consensus         5 l~~k~~lItGas~gIG~~~a~~l~~~-G~~v~~~~~~~~~~~~~l~---~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   79 (255)
T PRK06463          5 FKGKVALITGGTRGIGRAIAEAFLRE-GAKVAVLYNSAENEAKELR---E-KGVFTIKCDVGNRDQVKKSKEVVEKEFGR   79 (255)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCcHHHHHHHH---h-CCCeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            36799999999999999999999999 7888887665432222222   1 257889999998642            35


Q ss_pred             cCEEEEccCCCCCc-c---cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceecC
Q 029640           98 VDQIYHLACPASPI-F---YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~-~---~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~~  152 (190)
                      +|+||||||..... .   ..+..+..+++|+.++..+.+.+    ++.+ .++|++||...++
T Consensus        80 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~  143 (255)
T PRK06463         80 VDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIG  143 (255)
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCC
Confidence            89999999865321 1   22335567899999976665444    4344 3899999977664

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.58  E-value=4.2e-14  Score=110.10  Aligned_cols=119  Identities=22%  Similarity=0.242  Sum_probs=89.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh---hhhhhcCCceEEEeccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN---LRKWIGHPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~------------   94 (190)
                      +.+|.|+||||+..||.+++..|+++ |.++.++.|+....+..   +.+.....++..+++|++|.+            
T Consensus        10 ~~~kvVvITGASsGIG~~lA~~la~~-G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~   88 (282)
T KOG1205|consen   10 LAGKVVLITGASSGIGEALAYELAKR-GAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH   88 (282)
T ss_pred             hCCCEEEEeCCCcHHHHHHHHHHHhC-CCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence            47899999999999999999999999 77766666655554433   333333336999999999974            


Q ss_pred             cCCcCEEEEccCCCCCcccccC----chhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecce
Q 029640           95 LIEVDQIYHLACPASPIFYKYN----PVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSE  149 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~~~~~~~----~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~  149 (190)
                      +.++|++|||||.......+..    ....+++|+.|+..+.+++    ++.+ .+||.+||..
T Consensus        89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSia  152 (282)
T KOG1205|consen   89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIA  152 (282)
T ss_pred             cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccc
Confidence            3469999999997764332222    2247999999998887766    4555 5999999966

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.58  E-value=3.8e-14  Score=109.75  Aligned_cols=119  Identities=14%  Similarity=0.067  Sum_probs=86.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh-hhhhh-cCCceEEEecccccccc------------CC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWI-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-~~~~~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++||||+|+||+++++.|+++ |++|+++.|+....... ...+. ...++.++.+|+++...            ..
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~-g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAA-GFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGR   80 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHC-CCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            478999999999999999999999 88999988764432222 22221 12468899999998642            35


Q ss_pred             cCEEEEccCCCCCcc------cccCchhHHHHHHHHHHHHHHHHHHc-----C-----C-eEEEEecceec
Q 029640           98 VDQIYHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKRV-----G-----A-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~-----~-----~-~~i~vSS~~~~  151 (190)
                      +|+||||||...+..      ..+.++..+++|+.++.++++.+.+.     +     . ++|++||...+
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~  151 (256)
T PRK12745         81 IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAI  151 (256)
T ss_pred             CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhc
Confidence            899999998653211      12345567999999999998887432     1     2 69999997654

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.58  E-value=3.5e-14  Score=109.69  Aligned_cols=120  Identities=19%  Similarity=0.100  Sum_probs=87.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEeccccccc------------cCCc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LIEV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~------------~~~~   98 (190)
                      +++++|||++|+||+++++.|+++ |++|+++.|+..........+. ...++.++.+|+.+.+            ..++
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   79 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAA-GANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL   79 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            468999999999999999999999 8899999987543332222221 1246888999999864            2358


Q ss_pred             CEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        99 d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      |+|||++|.......    ....+..++.|+.++..+++.+    ++.+. ++|++||...+.
T Consensus        80 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~  142 (255)
T TIGR01963        80 DILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLV  142 (255)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcC
Confidence            999999986543221    1224456889999988887776    45555 899999976544

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=99.58  E-value=3e-14  Score=110.06  Aligned_cols=115  Identities=17%  Similarity=0.135  Sum_probs=83.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCcCE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVDQ  100 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~d~  100 (190)
                      |+++||||+|+||.++++.|+++ |++|+++.|+.+........+  ..++.++.+|+.+...            .++|+
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   77 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQ-GHKVIATGRRQERLQELKDEL--GDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDV   77 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh--ccceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            57999999999999999999999 899999998654332221111  2367889999998632            26999


Q ss_pred             EEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEeccee
Q 029640          101 IYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEV  150 (190)
Q Consensus       101 vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~  150 (190)
                      |||+||.....     ...+.....+++|+.++..+++.+    .+.+. ++|++||...
T Consensus        78 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~  137 (248)
T PRK10538         78 LVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAG  137 (248)
T ss_pred             EEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCccc
Confidence            99999864311     122345567899999977766655    44554 8999999654

>PRK08589 short chain dehydrogenase; Validated

Probab=99.58  E-value=5e-14  Score=110.41  Aligned_cols=120  Identities=18%  Similarity=0.121  Sum_probs=87.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+ +........+.. ..++..+.+|+.+...            .
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~-G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQE-GAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            36789999999999999999999999 8999999887 333333333321 2368889999998632            3


Q ss_pred             CcCEEEEccCCCCC-c-cc---ccCchhHHHHHHHHHHHHHHHHH----HcCCeEEEEecceec
Q 029640           97 EVDQIYHLACPASP-I-FY---KYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~-~-~~---~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~vSS~~~~  151 (190)
                      ++|+||||||.... . ..   .+..+..+++|+.++..+++.+.    +.+.++|++||...+
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  145 (272)
T PRK08589         82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQ  145 (272)
T ss_pred             CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhc
Confidence            58999999997532 1 11   12344578899999987776653    334589999996644

>PRK06523 short chain dehydrogenase; Provisional

Probab=99.58  E-value=5.6e-14  Score=109.15  Aligned_cols=113  Identities=19%  Similarity=0.193  Sum_probs=85.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.....        ...+.++++|+.|.+.            .+
T Consensus         7 ~~~k~vlItGas~gIG~~ia~~l~~~-G~~v~~~~r~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   77 (260)
T PRK06523          7 LAGKRALVTGGTKGIGAATVARLLEA-GARVVTTARSRPDDL--------PEGVEFVAADLTTAEGCAAVARAVLERLGG   77 (260)
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHC-CCEEEEEeCChhhhc--------CCceeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999 889999988643211        2367889999998642            35


Q ss_pred             cCEEEEccCCCCCc------ccccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      +|+|||+||.....      ...+.++..+++|+.++.++.+.+    ++.+. ++|++||...+
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~  142 (260)
T PRK06523         78 VDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRR  142 (260)
T ss_pred             CCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEeccccc
Confidence            89999999854211      123345667899999998776655    34443 89999996544

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=99.58  E-value=4.5e-14  Score=110.84  Aligned_cols=122  Identities=16%  Similarity=0.149  Sum_probs=87.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------cC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |+.|++++|+.+........+.. ..++.++++|+.+..            +.
T Consensus         8 ~~~k~vlVtGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (278)
T PRK08277          8 LKGKVAVITGGGGVLGGAMAKELARA-GAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFG   86 (278)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            36789999999999999999999999 88999999875443333333322 236788999999863            13


Q ss_pred             CcCEEEEccCCCCCcc-------------------cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF-------------------YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~-------------------~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~~  152 (190)
                      ++|+||||||...+..                   ..+.....+++|+.++..+++.+    .+.+ .++|++||...+.
T Consensus        87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~  166 (278)
T PRK08277         87 PCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAFT  166 (278)
T ss_pred             CCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcC
Confidence            6999999999643321                   12234567899999998776554    3344 3899999977654

>PRK08251 short chain dehydrogenase; Provisional

Probab=99.58  E-value=6.6e-14  Score=107.96  Aligned_cols=118  Identities=14%  Similarity=0.159  Sum_probs=87.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc------------C
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++||||+|+||+++++.|+++ +++|+++.|+.+........+.   +...+.++.+|+.+.+.            .
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAK-GRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999 7899999887554333222222   13468889999998742            3


Q ss_pred             CcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEeccee
Q 029640           97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEV  150 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~  150 (190)
                      ++|+|||+||.......    .+.....+++|+.++.++++.+.    +.+. ++|++||...
T Consensus        81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~  143 (248)
T PRK08251         81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSA  143 (248)
T ss_pred             CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            59999999997553221    12334578999999988887764    3344 8999999654

>PRK07985 oxidoreductase; Provisional

Probab=99.57  E-value=1.4e-13  Score=109.26  Aligned_cols=122  Identities=21%  Similarity=0.191  Sum_probs=88.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC-Chhhhhhhh--cCCceEEEeccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWI--GHPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~-~~~~~~~~~--~~~~~~~~~~D~~~~~------------   94 (190)
                      +++++++||||+|+||+++++.|+++ |++|++..|+... ..+.+....  ...++.++.+|+.+.+            
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~-G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~  125 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYARE-GADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA  125 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHC-CCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999 8899888764322 122222221  1235778899999863            


Q ss_pred             cCCcCEEEEccCCCCC-----cccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecC
Q 029640           95 LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~  152 (190)
                      +.++|++||+||....     ....+++++.+++|+.++.++++++...   +.++|++||...+.
T Consensus       126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~  191 (294)
T PRK07985        126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQ  191 (294)
T ss_pred             hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhcc
Confidence            2358999999985421     1123345678999999999999888653   34899999987664

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=99.57  E-value=2.7e-14  Score=110.11  Aligned_cols=122  Identities=21%  Similarity=0.126  Sum_probs=88.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ++++++||||+|+||+++++.|+++ |++|+++.|+..........+.. ...+.++.+|+.+...            .+
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   80 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEE-GAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP   80 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            6789999999999999999999999 88999998865433322222221 2468889999998632            25


Q ss_pred             cCEEEEccCCCCCcc-cc---cCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecCC
Q 029640           98 VDQIYHLACPASPIF-YK---YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGD  153 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~-~~---~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~~  153 (190)
                      +|+|||++|...... ..   ...+..+++|+.++.++++.+.    +.+. ++|++||...+..
T Consensus        81 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~  145 (250)
T TIGR03206        81 VDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVG  145 (250)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccC
Confidence            899999998643221 11   2234569999999999888774    3444 8999999876653

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.57  E-value=5.2e-14  Score=108.60  Aligned_cols=121  Identities=17%  Similarity=0.079  Sum_probs=84.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEE-EcCCCCCChhhhhhhhc-CCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~-~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++ ..|+.+........+.. ..++.++.+|+.+++.            
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~-g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEE-GYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEF   80 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35689999999999999999999999 777766 45654333222222211 3467889999998742            


Q ss_pred             CCcCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceec
Q 029640           96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~  151 (190)
                      ..+|+|||+||........    +.....+++|+.++.++++++.+    .+. ++|++||...+
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~  145 (250)
T PRK08063         81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSI  145 (250)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhc
Confidence            2589999999864432211    12334678999999999887754    333 89999996543

>PRK08643 acetoin reductase; Validated

Probab=99.57  E-value=3.9e-14  Score=109.76  Aligned_cols=118  Identities=19%  Similarity=0.166  Sum_probs=85.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CCc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      +++++||||+|+||+++++.|+++ |++|++++|+.+.......++.. ..++.++++|+.+++.            .++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   80 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVED-GFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL   80 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999 88999999875543333333321 2467889999998642            358


Q ss_pred             CEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEeccee
Q 029640           99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEV  150 (190)
Q Consensus        99 d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~  150 (190)
                      |+||||||.......    .+..+..+++|+.++..+++.+..    .+  .++|++||...
T Consensus        81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~  142 (256)
T PRK08643         81 NVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAG  142 (256)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcccc
Confidence            999999986432211    223456789999998877766643    22  48999998664

>PRK05872 short chain dehydrogenase; Provisional

Probab=99.57  E-value=5e-14  Score=111.80  Aligned_cols=122  Identities=20%  Similarity=0.134  Sum_probs=89.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.....+..+.+|++|.+.            .+
T Consensus         7 l~gk~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   85 (296)
T PRK05872          7 LAGKVVVVTGAARGIGAELARRLHAR-GAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGG   85 (296)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999 889999998655433333333223456667799998632            35


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+..+..+++|+.++.++++.+..    .+.++|++||...+.
T Consensus        86 id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~  148 (296)
T PRK05872         86 IDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFA  148 (296)
T ss_pred             CCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcC
Confidence            999999999754321    1223456789999999999888753    234899999976554

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.57  E-value=4e-14  Score=108.37  Aligned_cols=120  Identities=17%  Similarity=0.080  Sum_probs=87.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      ++++++||||+|+||+++++.|+++ |++|+++.|++.........+....++.++++|+.+...            .++
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   83 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAE-GYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL   83 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHC-CCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999998 889999998654333333333222568889999998632            269


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc---C-CeEEEEecceec
Q 029640           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---G-ARILLTSTSEVY  151 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~-~~~i~vSS~~~~  151 (190)
                      |+|||++|......    ..+..++.+++|+.++.++++++.+.   + .++|++||...+
T Consensus        84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~  144 (237)
T PRK07326         84 DVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGT  144 (237)
T ss_pred             CEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhc
Confidence            99999998654321    12234567899999999988887542   3 379999986543

>PRK05875 short chain dehydrogenase; Provisional

Probab=99.57  E-value=4.2e-14  Score=110.84  Aligned_cols=121  Identities=21%  Similarity=0.146  Sum_probs=87.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc---CCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++|||++|+||+++++.|+++ |++|+++.|+.+........+..   ..++.++.+|+.++..           
T Consensus         5 ~~~k~vlItGasg~IG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (276)
T PRK05875          5 FQDRTYLVTGGGSGIGKGVAAGLVAA-GAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAW   83 (276)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46799999999999999999999999 88999999875443332222221   2467888999998642           


Q ss_pred             -CCcCEEEEccCCCCC--cc---cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecceec
Q 029640           96 -IEVDQIYHLACPASP--IF---YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~--~~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~~  151 (190)
                       .++|+|||+||....  ..   ..+.....+++|+.++.++++.+.+    .+ .+++++||...+
T Consensus        84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~  150 (276)
T PRK05875         84 HGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAAS  150 (276)
T ss_pred             cCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhc
Confidence             258999999985432  11   1223456789999999999877643    23 389999997654

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=99.57  E-value=4e-14  Score=109.20  Aligned_cols=120  Identities=13%  Similarity=0.101  Sum_probs=88.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |+.|+++.|+..  ......+.. ..++..+.+|+++.+.            .
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~-G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEA-GADIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFG   79 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999 889999988542  111111111 2468889999998632            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~~  152 (190)
                      ++|+|||+||......    ..+..++.+++|+.++.++++.+.+    .+  .++|++||...+.
T Consensus        80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~  145 (248)
T TIGR01832        80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQ  145 (248)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhcc
Confidence            5999999999754321    1233556789999999999888743    33  3899999987665

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07035 short chain dehydrogenase; Provisional

Probab=99.57  E-value=6.3e-14  Score=108.37  Aligned_cols=119  Identities=20%  Similarity=0.142  Sum_probs=86.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||.++++.|+++ |++|++++|+.+........+.. ...+.++++|+.+...            .
T Consensus         6 l~~k~vlItGas~gIG~~l~~~l~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK07035          6 LTGKIALVTGASRGIGEAIAKLLAQQ-GAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG   84 (252)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999999 88999999865443333333221 2357788999988642            2


Q ss_pred             CcCEEEEccCCCCC-----cccccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecce
Q 029640           97 EVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~  149 (190)
                      ++|+|||+||....     ....+..+..+++|+.++..+++++    ++.+. ++|++||..
T Consensus        85 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~  147 (252)
T PRK07035         85 RLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVN  147 (252)
T ss_pred             CCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchh
Confidence            58999999985421     1112234567999999998887766    33343 899999864

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.57  E-value=4.5e-14  Score=109.06  Aligned_cols=117  Identities=21%  Similarity=0.193  Sum_probs=82.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC-
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE-   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~-   97 (190)
                      ++++++||||+|+||+++++.|+++ |++|++..++.......+.... ..++.++++|+.+...            .. 
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~-G~~vv~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   81 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFARE-GARVVVNYHQSEDAAEALADEL-GDRAIALQADVTDREQVQAMFATATEHFGKP   81 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            5689999999999999999999999 7888776554322222222211 2467889999988532            13 


Q ss_pred             cCEEEEccCCCCC-------cc---cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecce
Q 029640           98 VDQIYHLACPASP-------IF---YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSE  149 (190)
Q Consensus        98 ~d~vi~~ag~~~~-------~~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~  149 (190)
                      +|++||+||....       ..   +.+...+.+++|+.++.++++++..    .+. ++|++||..
T Consensus        82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~  148 (253)
T PRK08642         82 ITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNL  148 (253)
T ss_pred             CeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence            8999999985321       01   1223456799999999999988853    333 899999843

>PRK07775 short chain dehydrogenase; Provisional

Probab=99.56  E-value=6.9e-14  Score=109.74  Aligned_cols=121  Identities=12%  Similarity=0.042  Sum_probs=87.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------CC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      .+++++||||+|+||+++++.|+++ |+.|+++.|+.+........+. ...++.++.+|+.+.+.            .+
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   87 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAA-GFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGE   87 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            5589999999999999999999999 8899888886443222222221 12367888999998642            25


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      +|+|||+||.......    .+.....+++|+.++.++++.+.    +.+. ++|++||...+.
T Consensus        88 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~  151 (274)
T PRK07775         88 IEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALR  151 (274)
T ss_pred             CCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcC
Confidence            8999999986543221    12344568999999999988764    2333 799999976654

>PRK06181 short chain dehydrogenase; Provisional

Probab=99.56  E-value=8.6e-14  Score=108.29  Aligned_cols=120  Identities=13%  Similarity=0.095  Sum_probs=87.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CCc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      +++++||||+|+||+++++.|+++ |++|++++|+..........+.. ...+.++.+|+.+...            .++
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~-g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   79 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARA-GAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI   79 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999998 78999999875443332222221 2467888999998642            268


Q ss_pred             CEEEEccCCCCCccccc-----CchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceecC
Q 029640           99 DQIYHLACPASPIFYKY-----NPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYG  152 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~-----~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~~  152 (190)
                      |+||||||........+     ...+.+++|+.++.++++.+..    ...++|++||...+.
T Consensus        80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~  142 (263)
T PRK06181         80 DILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLT  142 (263)
T ss_pred             CEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccC
Confidence            99999998655332221     2345689999999999988853    234899999977654

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=99.56  E-value=9.5e-14  Score=111.12  Aligned_cols=121  Identities=15%  Similarity=0.147  Sum_probs=87.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhh-cCCceEEEeccccccc------------cC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~------------~~   96 (190)
                      ++++++||||++.||+++++.|+++ | ++|+++.|+.+........+. ....+.++.+|+.+..            ..
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~-G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   80 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAAT-GEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGR   80 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999999 7 899999886544333222221 1246788899999863            23


Q ss_pred             CcCEEEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHH----HHcC---CeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLA----KRVG---ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~---~~~i~vSS~~~~~  152 (190)
                      ++|++|||||...+.     ...+..+..+++|+.++..+++.+    ++.+   .+||++||...+.
T Consensus        81 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~  148 (314)
T TIGR01289        81 PLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNT  148 (314)
T ss_pred             CCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCcccc
Confidence            599999999964321     122345567999999988886655    3332   4999999987654

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.56  E-value=8.7e-14  Score=130.13  Aligned_cols=150  Identities=23%  Similarity=0.255  Sum_probs=103.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcC---CCeEEEEcCCCCCChhhhhhhh------------cCCceEEEecccccccc-
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENE---KNEVIVVDNYFTGSKDNLRKWI------------GHPRFELIRHDVTEPLL-   95 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~---~~~v~~~~r~~~~~~~~~~~~~------------~~~~~~~~~~D~~~~~~-   95 (190)
                      .++|+|||++||||.++++.|++++   ..+|+++.|....... ...+.            ...++.++.+|+.++.+ 
T Consensus       971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~-~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443       971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAG-LERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred             CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHH-HHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence            5889999999999999999999883   3788888886433221 11110            01368899999986532 


Q ss_pred             ----------CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCC--------
Q 029640           96 ----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV--------  156 (190)
Q Consensus        96 ----------~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~--------  156 (190)
                                .++|+|||+|+....   ..........|+.++.+++++|.+.+. +++|+||..+|+....        
T Consensus      1050 l~~~~~~~l~~~~d~iiH~Aa~~~~---~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~~ 1126 (1389)
T TIGR03443      1050 LSDEKWSDLTNEVDVIIHNGALVHW---VYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDELV 1126 (1389)
T ss_pred             cCHHHHHHHHhcCCEEEECCcEecC---ccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhhh
Confidence                      369999999986542   123344456899999999999998876 8999999999974211        


Q ss_pred             ----CCCCCCCccCCCCCCcccchhhhhHHHHhhhh
Q 029640          157 ----HPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       157 ----~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                          ..+.|+.+....+......|   +.||+.+|+
T Consensus      1127 ~~~~~~~~e~~~~~~~~~~~~~~Y---~~sK~~aE~ 1159 (1389)
T TIGR03443      1127 QAGGAGIPESDDLMGSSKGLGTGY---GQSKWVAEY 1159 (1389)
T ss_pred             hccCCCCCcccccccccccCCCCh---HHHHHHHHH
Confidence                12334322112222233456   888999985

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=99.56  E-value=5.7e-14  Score=108.38  Aligned_cols=120  Identities=18%  Similarity=0.111  Sum_probs=86.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccc--------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEP--------------   93 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~--------------   93 (190)
                      +++++++|||++|+||.++++.|++. |+.|++++|+.........++..  ..++.++.+|+.+.              
T Consensus        10 ~~~k~vlItG~~g~iG~~la~~l~~~-G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (247)
T PRK08945         10 LKDRIILVTGAGDGIGREAALTYARH-GATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE   88 (247)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence            47899999999999999999999998 88999999876443333333322  23567777788631              


Q ss_pred             ccCCcCEEEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEeccee
Q 029640           94 LLIEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEV  150 (190)
Q Consensus        94 ~~~~~d~vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~  150 (190)
                      ...++|+|||+||.....     ...+..+..+++|+.++.++++++.    +.+. ++|++||...
T Consensus        89 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~  155 (247)
T PRK08945         89 QFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVG  155 (247)
T ss_pred             HhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhh
Confidence            123589999999865431     1123456679999999888888764    3444 8999998653

>PRK07856 short chain dehydrogenase; Provisional

Probab=99.56  E-value=8e-14  Score=107.91  Aligned_cols=114  Identities=18%  Similarity=0.177  Sum_probs=86.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+.   .    .....+.++++|+.+.+.            .+
T Consensus         4 ~~~k~~lItGas~gIG~~la~~l~~~-g~~v~~~~r~~~~---~----~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   75 (252)
T PRK07856          4 LTGRVVLVTGGTRGIGAGIARAFLAA-GATVVVCGRRAPE---T----VDGRPAEFHAADVRDPDQVAALVDAIVERHGR   75 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCChhh---h----hcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999 8899999886543   0    113467889999998632            35


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----c-C-CeEEEEecceec
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----V-G-ARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~-~-~~~i~vSS~~~~  151 (190)
                      +|+||||||......    ..+..+..+++|+.++..+++.+..    . + .++|++||...+
T Consensus        76 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~  139 (252)
T PRK07856         76 LDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGR  139 (252)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccC
Confidence            899999998654221    1223456789999999999988753    2 2 389999996644

>PRK08339 short chain dehydrogenase; Provisional

Probab=99.56  E-value=8.6e-14  Score=108.65  Aligned_cols=121  Identities=17%  Similarity=0.121  Sum_probs=88.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccccc-----------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL-----------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~-----------~   96 (190)
                      +.+++++||||+|.||+++++.|+++ |++|++++|+..........+..  ..++.++.+|+.|+..           .
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g   84 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARA-GADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG   84 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence            46799999999999999999999999 88999999875443333222221  3468889999998632           3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceec
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~  151 (190)
                      ++|++|||||......    ..+.++..+++|+.++..+.+.+    ++.+ .++|++||...+
T Consensus        85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~  148 (263)
T PRK08339         85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIK  148 (263)
T ss_pred             CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCcccc
Confidence            5999999999654321    22345567899988887776555    3444 389999997643

>PRK08264 short chain dehydrogenase; Validated

Probab=99.56  E-value=1e-13  Score=106.25  Aligned_cols=115  Identities=22%  Similarity=0.195  Sum_probs=86.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------CCcCEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQI  101 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d~v  101 (190)
                      .+++++||||+|+||+++++.|+++ |+ .|+++.|+.+....      ....+.++.+|+.+.+.        ..+|+|
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~-G~~~V~~~~r~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~id~v   77 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLAR-GAAKVYAAARDPESVTD------LGPRVVPLQLDVTDPASVAAAAEAASDVTIL   77 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CcccEEEEecChhhhhh------cCCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence            5689999999999999999999999 76 99999987554322      13468889999998642        248999


Q ss_pred             EEccCCCC-Ccc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640          102 YHLACPAS-PIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus       102 i~~ag~~~-~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      ||++|... ...    ..+.....+++|+.++.++++++.    ..+. ++|++||...+.
T Consensus        78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~  138 (238)
T PRK08264         78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV  138 (238)
T ss_pred             EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc
Confidence            99998732 211    123345678999999999988864    3343 799999976554

>PRK06701 short chain dehydrogenase; Provisional

Probab=99.56  E-value=9.1e-14  Score=110.06  Aligned_cols=123  Identities=20%  Similarity=0.194  Sum_probs=90.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||.++++.|+++ |++|+++.|+.............  ..++.++.+|+.+...            
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~-G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~  122 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKE-GADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL  122 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46789999999999999999999999 89999988865432222222211  2357789999998642            


Q ss_pred             CCcCEEEEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecCC
Q 029640           96 IEVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGD  153 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~~  153 (190)
                      .++|+|||+||.....  .   ..+.....+++|+.++.++++++...   ..++|++||...|..
T Consensus       123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~  188 (290)
T PRK06701        123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEG  188 (290)
T ss_pred             CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCC
Confidence            2589999999864321  1   12234567999999999999988653   248999999877653

>PRK08265 short chain dehydrogenase; Provisional

Probab=99.56  E-value=1e-13  Score=108.01  Aligned_cols=118  Identities=20%  Similarity=0.232  Sum_probs=87.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++++|+.+++.            ..
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   80 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAA-GARVAIVDIDADNGAAVAASL--GERARFIATDITDDAAIERAVATVVARFGR   80 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--CCeeEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            36789999999999999999999999 899999998754333322222  2468889999998742            35


Q ss_pred             cCEEEEccCCCCCc---ccccCchhHHHHHHHHHHHHHHHHHH---c-CCeEEEEeccee
Q 029640           98 VDQIYHLACPASPI---FYKYNPVKTIKTNVIGTLNMLGLAKR---V-GARILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~---~-~~~~i~vSS~~~  150 (190)
                      +|+||||||.....   ...+.+.+.+++|+.++..+++.+..   . +.++|++||...
T Consensus        81 id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~  140 (261)
T PRK08265         81 VDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISA  140 (261)
T ss_pred             CCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhh
Confidence            89999999864321   12234556789999999988887653   2 248999999664

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=99.56  E-value=6.6e-14  Score=108.61  Aligned_cols=116  Identities=17%  Similarity=0.173  Sum_probs=87.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      .+++++||||+|+||+++++.|+++ |++|+++.|+.+........+  ...+.++.+|+.+...            ..+
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAE-GARVVIADIKPARARLAALEI--GPAAIAVSLDVTRQDSIDRIVAAAVERFGGI   81 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5689999999999999999999999 899999988655433322222  2357889999998632            358


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc------CCeEEEEecce
Q 029640           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV------GARILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~------~~~~i~vSS~~  149 (190)
                      |+|||+||......    ..+..+..+++|+.++.++++++...      +.++|++||..
T Consensus        82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~  142 (257)
T PRK07067         82 DILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQA  142 (257)
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHH
Confidence            99999998654321    12345567999999999999888532      24799999954

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.56  E-value=4.9e-14  Score=107.08  Aligned_cols=117  Identities=16%  Similarity=0.142  Sum_probs=81.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------CCcCEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQIY  102 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d~vi  102 (190)
                      ++|+++||||+|+||+++++.|+++  ++|+++.|+...... +...  ...+.++++|+.|...        .++|+||
T Consensus         2 ~~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r~~~~~~~-~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi   76 (227)
T PRK08219          2 ERPTALITGASRGIGAAIARELAPT--HTLLLGGRPAERLDE-LAAE--LPGATPFPVDLTDPEAIAAAVEQLGRLDVLV   76 (227)
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHhh--CCEEEEeCCHHHHHH-HHHH--hccceEEecCCCCHHHHHHHHHhcCCCCEEE
Confidence            4579999999999999999999987  789999886433221 1111  2357889999998632        2599999


Q ss_pred             EccCCCCCccc----ccCchhHHHHHHHHHHH----HHHHHHHcCCeEEEEecceecC
Q 029640          103 HLACPASPIFY----KYNPVKTIKTNVIGTLN----MLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus       103 ~~ag~~~~~~~----~~~~~~~~~~n~~~~~~----l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      |++|.......    .+.....+++|+.+...    +++.+++...++|++||...++
T Consensus        77 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~  134 (227)
T PRK08219         77 HNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINSGAGLR  134 (227)
T ss_pred             ECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcchHhcC
Confidence            99987543211    12234457888888544    4445555556999999977654

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=99.55  E-value=1.4e-13  Score=106.14  Aligned_cols=120  Identities=18%  Similarity=0.100  Sum_probs=86.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      .+++++||||+|+||+++++.|+++ |+.|++..++.+.. +.....+.. ..++.++.+|+.+...            .
T Consensus         5 ~~~~~lItG~s~~iG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (247)
T PRK12935          5 NGKVAIVTGGAKGIGKAITVALAQE-GAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFG   83 (247)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999999999998 78887765543222 222222222 2468889999998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecceec
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~~  151 (190)
                      .+|+|||+||......    ..+..++.+++|+.++.++++++..    .+ .++|++||...+
T Consensus        84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~  147 (247)
T PRK12935         84 KVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQ  147 (247)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhc
Confidence            4899999999754321    1234567799999999999888864    23 389999996543

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=99.55  E-value=4.8e-14  Score=108.00  Aligned_cols=121  Identities=18%  Similarity=0.243  Sum_probs=91.1

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-cCCcCEEEEccCCCC--Cc
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-LIEVDQIYHLACPAS--PI  111 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~d~vi~~ag~~~--~~  111 (190)
                      |+||||||+||++|+..|.+. +|+|+++.|++......+..     .+.  ..+-.+.. ..++|+|||.||..-  -.
T Consensus         1 IliTGgTGlIG~~L~~~L~~~-gh~v~iltR~~~~~~~~~~~-----~v~--~~~~~~~~~~~~~DavINLAG~~I~~rr   72 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKG-GHQVTILTRRPPKASQNLHP-----NVT--LWEGLADALTLGIDAVINLAGEPIAERR   72 (297)
T ss_pred             CeEeccccchhHHHHHHHHhC-CCeEEEEEcCCcchhhhcCc-----ccc--ccchhhhcccCCCCEEEECCCCcccccc
Confidence            589999999999999999999 89999999987766543321     112  12222222 237999999999443  23


Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHcCC---eEEEEecceecCCCCCCCCCCCC
Q 029640          112 FYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESY  163 (190)
Q Consensus       112 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~vSS~~~~~~~~~~~~~e~~  163 (190)
                      |.+...+.+++--+..|..+.++.++...   .+|.-|.++.||......++|+.
T Consensus        73 Wt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~  127 (297)
T COG1090          73 WTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEES  127 (297)
T ss_pred             CCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCC
Confidence            56667788899999999999999886553   46666677789999888999984

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.55  E-value=8.2e-14  Score=106.92  Aligned_cols=121  Identities=15%  Similarity=0.018  Sum_probs=88.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ++++++|||++|+||+++++.|+++ |++|+++.|+.....+....+.. ..++.++.+|+.+...            .+
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKE-GVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGS   84 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5689999999999999999999999 78999999875543332222221 2468889999988642            36


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~~  152 (190)
                      +|+|||++|......    ..+...+.+++|+.++.++++.+..    .+. ++|++||...+.
T Consensus        85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~  148 (239)
T PRK07666         85 IDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQK  148 (239)
T ss_pred             ccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhcc
Confidence            999999998654321    1223456789999999988887753    333 799999876443

>PRK07102 short chain dehydrogenase; Provisional

Probab=99.55  E-value=8.9e-14  Score=107.05  Aligned_cols=117  Identities=13%  Similarity=0.092  Sum_probs=86.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc---------CCcCE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL---------IEVDQ  100 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~---------~~~d~  100 (190)
                      ||+++||||+|+||+++++.|+++ |++|++++|+.+........+.  ...++.++++|+.+...         .++|+
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~   79 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAA-GARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI   79 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence            478999999999999999999999 8999999997654433333222  23478899999998642         24799


Q ss_pred             EEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecce
Q 029640          101 IYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSE  149 (190)
Q Consensus       101 vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~  149 (190)
                      |||++|.......    .+.....+++|+.++..+++.+..    .+. ++|++||..
T Consensus        80 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~  137 (243)
T PRK07102         80 VLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVA  137 (243)
T ss_pred             EEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEeccc
Confidence            9999986543211    122345789999999999887754    343 899999864

>PRK08628 short chain dehydrogenase; Provisional

Probab=99.55  E-value=8.8e-14  Score=107.93  Aligned_cols=120  Identities=18%  Similarity=0.180  Sum_probs=88.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |+.|+++.|+.... .....+. ...++.++.+|+.+.+.            .
T Consensus         5 l~~~~ilItGasggiG~~la~~l~~~-G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK08628          5 LKDKVVIVTGGASGIGAAISLRLAEE-GAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFG   82 (258)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHc-CCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            57899999999999999999999999 88898888876543 2222221 13468899999998642            2


Q ss_pred             CcCEEEEccCCCCCcccc---cCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceec
Q 029640           97 EVDQIYHLACPASPIFYK---YNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~  151 (190)
                      .+|+|||+||.......+   +..+..+++|+.++.++.+.+.+    ...++|++||...+
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~  144 (258)
T PRK08628         83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTAL  144 (258)
T ss_pred             CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhc
Confidence            589999999964322111   33456789999999998887753    22489999996644

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.55  E-value=8.9e-14  Score=108.00  Aligned_cols=120  Identities=15%  Similarity=0.179  Sum_probs=87.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~------------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |+.|+++.|+ ...+ .+....  ...++.++.+|+.+.+.            
T Consensus        13 l~~k~vlItGas~gIG~~ia~~l~~~-G~~v~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~   89 (258)
T PRK06935         13 LDGKVAIVTGGNTGLGQGYAVALAKA-GADIIITTHG-TNWD-ETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF   89 (258)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCC-cHHH-HHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            36799999999999999999999999 8999998886 2222 222221  12468889999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      ..+|++||+||......    ..+..+..+++|+.++..+.+.+.    +.+. ++|++||...+.
T Consensus        90 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  155 (258)
T PRK06935         90 GKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQ  155 (258)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhcc
Confidence            25899999999654321    122455678999999888876664    3343 899999976553

>PRK06841 short chain dehydrogenase; Provisional

Probab=99.55  E-value=2.4e-13  Score=105.24  Aligned_cols=118  Identities=20%  Similarity=0.136  Sum_probs=87.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |+.|+++.|+... ......+ ....+..+.+|+.+...            .+
T Consensus        13 ~~~k~vlItGas~~IG~~la~~l~~~-G~~Vi~~~r~~~~-~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   89 (255)
T PRK06841         13 LSGKVAVVTGGASGIGHAIAELFAAK-GARVALLDRSEDV-AEVAAQL-LGGNAKGLVCDVSDSQSVEAAVAAVISAFGR   89 (255)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHH-HHHHHHh-hCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            46799999999999999999999998 8899999886542 1112222 23456788999998641            25


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEeccee
Q 029640           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~  150 (190)
                      +|+|||+||.......    .+..+..+++|+.++.++++.+..    .+ .++|++||...
T Consensus        90 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~  151 (255)
T PRK06841         90 IDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAG  151 (255)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhh
Confidence            8999999996543211    223455789999999999988754    23 38999999653

>PRK12742 oxidoreductase; Provisional

Probab=99.55  E-value=2e-13  Score=104.54  Aligned_cols=116  Identities=16%  Similarity=0.114  Sum_probs=82.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc--------cCCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~d~v  101 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.++....   ...+.....+.++.+|+.|..        ..++|++
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~-G~~v~~~~~~~~~~---~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~l   79 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTD-GANVRFTYAGSKDA---AERLAQETGATAVQTDSADRDAVIDVVRKSGALDIL   79 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEecCCCHHH---HHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEE
Confidence            36789999999999999999999999 78887776543221   112211224567889998753        2358999


Q ss_pred             EEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640          102 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus       102 i~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      ||+||......    ..+..+..+++|+.++.++++.+...   ..++|++||..
T Consensus        80 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~  134 (237)
T PRK12742         80 VVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVN  134 (237)
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            99998654211    12345678999999999987666543   24899999954

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.55  E-value=1.4e-13  Score=105.52  Aligned_cols=119  Identities=18%  Similarity=0.179  Sum_probs=87.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------CC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ++++++|||++|+||+++++.|+++ |+.|+++.|+..........+. ...++.++.+|+.|...            ..
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAAD-GAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGA   82 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5689999999999999999999999 8889999987554332222222 13468889999998642            24


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEeccee
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~  150 (190)
                      +|+|||++|......    ..+.....+++|+.++.++++.+.    +.+. ++|++||...
T Consensus        83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~  144 (246)
T PRK05653         83 LDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSG  144 (246)
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHh
Confidence            799999998654321    122345578999999999988884    4454 8999998653

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=99.55  E-value=1.5e-13  Score=106.63  Aligned_cols=119  Identities=17%  Similarity=0.147  Sum_probs=87.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |..|++++|+.+........+.. ..++.++.+|+.+.+.            .
T Consensus         9 l~~k~vlVtG~s~gIG~~la~~l~~~-G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   87 (255)
T PRK06113          9 LDGKCAIITGAGAGIGKEIAITFATA-GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLG   87 (255)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999999 88888888865443332222211 2367888999998642            3


Q ss_pred             CcCEEEEccCCCCCccc---ccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecce
Q 029640           97 EVDQIYHLACPASPIFY---KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~---~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~  149 (190)
                      ++|+|||+||...+...   .+..+..+++|+.++.++++++.    +.+. ++|++||..
T Consensus        88 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~  148 (255)
T PRK06113         88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMA  148 (255)
T ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEeccc
Confidence            58999999996543211   23345568999999999998885    3333 899999965

>PRK07825 short chain dehydrogenase; Provisional

Probab=99.55  E-value=1.6e-13  Score=107.45  Aligned_cols=118  Identities=19%  Similarity=0.064  Sum_probs=86.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++..|+.+........+   ..+.++.+|+.+.+.            .+
T Consensus         3 ~~~~~ilVtGasggiG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (273)
T PRK07825          3 LRGKVVAITGGARGIGLATARALAAL-GARVAIGDLDEALAKETAAEL---GLVVGGPLDVTDPASFAAFLDAVEADLGP   78 (273)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh---ccceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            35789999999999999999999999 889999888654332222221   147788999998642            35


Q ss_pred             cCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                      +|++|||||........    +.....+++|+.++.++++.+.    +.+. ++|++||...+
T Consensus        79 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~  141 (273)
T PRK07825         79 IDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGK  141 (273)
T ss_pred             CCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCcccc
Confidence            89999999975432211    2244578999999888776653    4454 89999997644

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.54  E-value=7.7e-14  Score=108.12  Aligned_cols=120  Identities=12%  Similarity=0.046  Sum_probs=87.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+++||+++++.|+++ |++|+++.|+..  +.....+. ...++.++.+|+.+++.            .
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~-G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   82 (251)
T PRK12481          6 LNGKVAIITGCNTGLGQGMAIGLAKA-GADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMG   82 (251)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999999 899988877532  11111111 13467889999998742            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~~  152 (190)
                      ++|++|||||......    ..+.++..+++|+.++..+.+.+..    .+  .++|++||...+.
T Consensus        83 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~  148 (251)
T PRK12481         83 HIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQ  148 (251)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcC
Confidence            5999999999654321    2234556789999999888876642    32  4899999977554

>PRK09134 short chain dehydrogenase; Provisional

Probab=99.54  E-value=2.1e-13  Score=105.90  Aligned_cols=119  Identities=15%  Similarity=0.026  Sum_probs=83.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhhhhh-cCCceEEEecccccccc------------C
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      .+++++||||+|+||+++++.|+++ |+.|+++.++..... .....+. ....+.++.+|++|...            .
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   86 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAH-GFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALG   86 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5689999999999999999999998 788877665432221 1112221 13468889999998532            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc----C-CeEEEEeccee
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G-ARILLTSTSEV  150 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~i~vSS~~~  150 (190)
                      ++|+||||||......    ..+..+..+++|+.++.++++.+...    . .++|+++|...
T Consensus        87 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~  149 (258)
T PRK09134         87 PITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRV  149 (258)
T ss_pred             CCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhh
Confidence            4899999998654321    22345667999999999999887643    2 26788876443

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=99.54  E-value=2.1e-13  Score=105.81  Aligned_cols=117  Identities=21%  Similarity=0.172  Sum_probs=85.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc------------C
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++||||+|+||+++++.|+++ |+.|++++|+..........+.   ....+.++.+|+.+...            .
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~-g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEE-GYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999 8999999887544333222221   12468899999998632            3


Q ss_pred             CcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecce
Q 029640           97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~  149 (190)
                      ++|+|||+||.......    .+..+..+++|+.++.++++.+.+    .+  .++|++||..
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~  143 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKS  143 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcc
Confidence            58999999986553221    223456689999998888776643    34  3899999854

>PRK09242 tropinone reductase; Provisional

Probab=99.54  E-value=1.3e-13  Score=107.04  Aligned_cols=122  Identities=11%  Similarity=0.085  Sum_probs=90.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEeccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~------------   94 (190)
                      +.+++++|||++|+||+.+++.|+++ |++|+++.|+.+.......++.   ...++.++.+|+.+..            
T Consensus         7 ~~~k~~lItGa~~gIG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (257)
T PRK09242          7 LDGQTALITGASKGIGLAIAREFLGL-GADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH   85 (257)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999 8999999987544333332222   1346888899999853            


Q ss_pred             cCCcCEEEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecceecC
Q 029640           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVYG  152 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~~~  152 (190)
                      +.++|+|||+||.....    ...+..+..+.+|+.++.++++++.    +.+ .++|++||...+.
T Consensus        86 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~  152 (257)
T PRK09242         86 WDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLT  152 (257)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCC
Confidence            23699999999864321    1233455679999999999988774    344 3899999976554

>PRK07454 short chain dehydrogenase; Provisional

Probab=99.54  E-value=1.1e-13  Score=106.38  Aligned_cols=121  Identities=15%  Similarity=0.023  Sum_probs=88.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ++++++||||+|+||+.+++.|+++ |++|+++.|+.+........+.. ..++.++.+|+++...            .+
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKA-GWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5689999999999999999999999 78999999865433322222211 2468889999998642            25


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      +|+|||+||......    ..+.....+++|+.++.++++.+    .+.+. ++|++||...+.
T Consensus        84 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~  147 (241)
T PRK07454         84 PDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARN  147 (241)
T ss_pred             CCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCc
Confidence            899999998654321    11234556899999998887766    33443 899999987664

>PRK12747 short chain dehydrogenase; Provisional

Probab=99.54  E-value=1.4e-13  Score=106.45  Aligned_cols=121  Identities=15%  Similarity=0.081  Sum_probs=84.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEc-CCCCCChhhhhhhhc-CCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD-NYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~-r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|++. |+.|.+.. |+.+........+.. ...+..+.+|+.+...            
T Consensus         2 ~~~k~~lItGas~gIG~~ia~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (252)
T PRK12747          2 LKGKVALVTGASRGIGRAIAKRLAND-GALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL   80 (252)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHh
Confidence            46799999999999999999999999 88888764 332222222222211 2356778889987420            


Q ss_pred             ------CCcCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceec
Q 029640           96 ------IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVY  151 (190)
Q Consensus        96 ------~~~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~  151 (190)
                            .++|+||||||........    +..+..+++|+.++..+++++...   ..++|++||...+
T Consensus        81 ~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~  149 (252)
T PRK12747         81 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATR  149 (252)
T ss_pred             hhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccc
Confidence                  1699999999964322111    224567889999999999877543   2389999997654

>PRK07577 short chain dehydrogenase; Provisional

Probab=99.54  E-value=1.5e-13  Score=105.08  Aligned_cols=111  Identities=23%  Similarity=0.155  Sum_probs=82.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----------CCcC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----------IEVD   99 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----------~~~d   99 (190)
                      .+++++||||+|+||+++++.|+++ |++|+++.|+.....          ...++.+|+.+.+.           .++|
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~-G~~v~~~~r~~~~~~----------~~~~~~~D~~~~~~~~~~~~~~~~~~~~d   70 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANL-GHQVIGIARSAIDDF----------PGELFACDLADIEQTAATLAQINEIHPVD   70 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHC-CCEEEEEeCCccccc----------CceEEEeeCCCHHHHHHHHHHHHHhCCCc
Confidence            4689999999999999999999999 899999988654310          12567889988642           1589


Q ss_pred             EEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640          100 QIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus       100 ~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      +|||++|.......    .+.....+++|+.++.++.+.+    ++.+. ++|++||...|+
T Consensus        71 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~  132 (234)
T PRK07577         71 AIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFG  132 (234)
T ss_pred             EEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccC
Confidence            99999997554221    2234557899999988876665    34444 899999977654

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=99.54  E-value=1.2e-13  Score=107.82  Aligned_cols=119  Identities=13%  Similarity=0.006  Sum_probs=88.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++|||++|+||+++++.|+++ |+.|+++.|+..........+.. ..++.++.+|+.+...            .
T Consensus         8 ~~~k~~lItGa~~~iG~~ia~~l~~~-G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   86 (265)
T PRK07097          8 LKGKIALITGASYGIGFAIAKAYAKA-GATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVG   86 (265)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            57799999999999999999999999 88899888865544333333322 2368889999998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecce
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~  149 (190)
                      .+|+||||||......    ..+..+..+++|+.++..+.+.+..    .+ .++|++||..
T Consensus        87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~  148 (265)
T PRK07097         87 VIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMM  148 (265)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCcc
Confidence            5899999999755321    2233556789999999888776643    34 3899999854

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=99.54  E-value=8.2e-14  Score=108.50  Aligned_cols=120  Identities=18%  Similarity=0.142  Sum_probs=86.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+........+  ..++.++++|+.+..            +.+
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   80 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAE-GARVAVLERSAEKLASLRQRF--GDHVLVVEGDVTSYADNQRAVDQTVDAFGK   80 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--CCcceEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            36789999999999999999999999 899999988654332222211  235788899999863            235


Q ss_pred             cCEEEEccCCCCCc--c---ccc----CchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceecC
Q 029640           98 VDQIYHLACPASPI--F---YKY----NPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~--~---~~~----~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~~  152 (190)
                      +|++||+||.....  .   ..+    .++..+++|+.++..+++.+..    .+.++|++||...+.
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~  148 (263)
T PRK06200         81 LDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFY  148 (263)
T ss_pred             CCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcC
Confidence            99999999964321  1   111    1345678999999888877753    234799999976553

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.54  E-value=9.4e-14  Score=107.57  Aligned_cols=117  Identities=18%  Similarity=0.139  Sum_probs=82.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------CCcCEEEEc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------IEVDQIYHL  104 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------~~~d~vi~~  104 (190)
                      +++++||||+|+||+++++.|+++ |+.|+++.|+............ ...++.++.+|+.|...      .++|+||||
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~   80 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARK-GHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN   80 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence            578999999999999999999999 8999999886433222111111 12357888899998642      279999999


Q ss_pred             cCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecce
Q 029640          105 ACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSE  149 (190)
Q Consensus       105 ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~  149 (190)
                      ||.......    .+..+..+++|+.++.++.+.+    .+.+. ++|++||..
T Consensus        81 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~  134 (257)
T PRK09291         81 AGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMA  134 (257)
T ss_pred             CCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChh
Confidence            996543221    1224456888998887666544    44444 899999865

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=99.54  E-value=2.1e-13  Score=106.38  Aligned_cols=113  Identities=22%  Similarity=0.215  Sum_probs=86.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.....        ..++.++.+|+.+...            ..
T Consensus         7 l~~k~vlItG~s~gIG~~la~~l~~~-G~~v~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   77 (266)
T PRK06171          7 LQGKIIIVTGGSSGIGLAIVKELLAN-GANVVNADIHGGDGQ--------HENYQFVPTDVSSAEEVNHTVAEIIEKFGR   77 (266)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCccccc--------cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999 899999988654432        2367888999998642            35


Q ss_pred             cCEEEEccCCCCCc-------------ccccCchhHHHHHHHHHHHHHHHHHHc----C-CeEEEEecceec
Q 029640           98 VDQIYHLACPASPI-------------FYKYNPVKTIKTNVIGTLNMLGLAKRV----G-ARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~-------------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~i~vSS~~~~  151 (190)
                      +|+|||+||...+.             ...+.++..+++|+.++.++++++...    + .++|++||...+
T Consensus        78 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~  149 (266)
T PRK06171         78 IDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGL  149 (266)
T ss_pred             CCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEcccccc
Confidence            89999999964321             112334567899999999998887542    3 379999997654

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=99.54  E-value=3.1e-13  Score=104.67  Aligned_cols=119  Identities=18%  Similarity=0.078  Sum_probs=88.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+.......++.. ..++.++.+|+.+.+.            .
T Consensus         7 l~~k~~lItGas~giG~~ia~~L~~~-G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (254)
T PRK08085          7 LAGKNILITGSAQGIGFLLATGLAEY-GAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIG   85 (254)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence            46789999999999999999999999 89999999875544333333322 2357788899998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecce
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~  149 (190)
                      ++|+|||+||......    ..+.++..+++|+.++.++++.+..    .+ .++|++||..
T Consensus        86 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~  147 (254)
T PRK08085         86 PIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQ  147 (254)
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccch
Confidence            5899999999653211    1234556799999999888887653    33 3899999864

>PRK12829 short chain dehydrogenase; Provisional

Probab=99.54  E-value=1.6e-13  Score=106.64  Aligned_cols=118  Identities=23%  Similarity=0.234  Sum_probs=85.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+..... .......++.++.+|+.++..            .+
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~-g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEA-GARVHVCDVSEAALAAT-AARLPGAKVTATVADVADPAQVERVFDTAVERFGG   86 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHH-HHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            47799999999999999999999999 88999999865433322 221222256888999998642            36


Q ss_pred             cCEEEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHHH----HcCC--eEEEEecce
Q 029640           98 VDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA--RILLTSTSE  149 (190)
Q Consensus        98 ~d~vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~--~~i~vSS~~  149 (190)
                      +|+|||+||...+.     ...+.....+++|+.++..+++.+.    ..+.  +++++||..
T Consensus        87 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~  149 (264)
T PRK12829         87 LDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVA  149 (264)
T ss_pred             CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccc
Confidence            89999999965221     1223456789999999999888763    3333  577777644

>PRK05650 short chain dehydrogenase; Provisional

Probab=99.54  E-value=2.2e-13  Score=106.58  Aligned_cols=119  Identities=20%  Similarity=0.137  Sum_probs=86.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CCcC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~~d   99 (190)
                      |+++||||+|+||+++++.|+++ |.+|++++|+.+........+.. ...+.++.+|+.+...            .++|
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id   79 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWARE-GWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID   79 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            57999999999999999999999 88999998876554443333322 3467889999998632            3599


Q ss_pred             EEEEccCCCCCccccc----CchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640          100 QIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      +|||+||.......++    ..+..+++|+.++.++.+.+    .+.+. ++|++||...+.
T Consensus        80 ~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~  141 (270)
T PRK05650         80 VIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLM  141 (270)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcC
Confidence            9999999765432222    23446889988888766654    45554 899999976543

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=99.54  E-value=1.4e-13  Score=105.78  Aligned_cols=118  Identities=15%  Similarity=0.090  Sum_probs=86.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |+.|.+..|+.+........+  ..++.++.+|+.+...            .+
T Consensus         4 ~~~~~vlItGa~g~iG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T PRK12936          4 LSGRKALVTGASGGIGEEIARLLHAQ-GAIVGLHGTRVEKLEALAAEL--GERVKIFPANLSDRDEVKALGQKAEADLEG   80 (245)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            36789999999999999999999999 788888877544333222222  2467888999998642            35


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEeccee
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~  150 (190)
                      +|+||||||...+..    ..+.++..+++|+.++.++++++.+    .+ .++|++||...
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~  142 (245)
T PRK12936         81 VDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVG  142 (245)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHh
Confidence            999999999754321    2234556789999999988887642    33 38999999653

>PRK08226 short chain dehydrogenase; Provisional

Probab=99.54  E-value=2.7e-13  Score=105.44  Aligned_cols=118  Identities=17%  Similarity=0.142  Sum_probs=85.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.. .......+. ...++.++.+|+.+...            .
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~-G~~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARH-GANLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            36799999999999999999999999 889999988653 222222222 13467889999998632            3


Q ss_pred             CcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecce
Q 029640           97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~  149 (190)
                      ++|+|||+||.......    .+..++.+++|+.++.++++.+..    .+ .++|++||..
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~  143 (263)
T PRK08226         82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVT  143 (263)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHH
Confidence            58999999996543221    223445789999999998887653    23 3899999854

>PRK12937 short chain dehydrogenase; Provisional

Probab=99.54  E-value=1.5e-13  Score=105.68  Aligned_cols=121  Identities=25%  Similarity=0.164  Sum_probs=86.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh-hhhh-cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      .++++++||||+|+||+++++.|+++ |+.++++.|+.......+ ..+. ...++.++.+|+.+...            
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAAD-GFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAF   81 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            36789999999999999999999999 788877766543222211 1121 13468899999998632            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc--C-CeEEEEecceec
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~-~~~i~vSS~~~~  151 (190)
                      .++|+|||+||......    ..+..+..+++|+.++.++++.+.+.  . .++|++||...+
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~  144 (245)
T PRK12937         82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIA  144 (245)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeecccc
Confidence            25999999999654211    12234567899999999998887653  2 389999986543

>PRK07904 short chain dehydrogenase; Provisional

Probab=99.54  E-value=3.5e-13  Score=104.68  Aligned_cols=119  Identities=16%  Similarity=0.131  Sum_probs=85.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC-Chhhhhhhhc--CCceEEEecccccccc-----------C
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIG--HPRFELIRHDVTEPLL-----------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~-~~~~~~~~~~--~~~~~~~~~D~~~~~~-----------~   96 (190)
                      .+++++||||+|+||+++++.|+++++++|+++.|+.+. ......++..  ..++.++.+|+.|...           .
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g   86 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG   86 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence            568999999999999999999999955899999987664 3333333322  2368899999998542           2


Q ss_pred             CcCEEEEccCCCCCccc-ccCc---hhHHHHHHHHHHHH----HHHHHHcCC-eEEEEecce
Q 029640           97 EVDQIYHLACPASPIFY-KYNP---VKTIKTNVIGTLNM----LGLAKRVGA-RILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~-~~~~---~~~~~~n~~~~~~l----~~~~~~~~~-~~i~vSS~~  149 (190)
                      ++|++||++|....... ....   .+.+++|+.++..+    ++.+.+.+. ++|++||..
T Consensus        87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~  148 (253)
T PRK07904         87 DVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVA  148 (253)
T ss_pred             CCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechh
Confidence            69999999987543211 1111   24689999988764    555566554 899999965

>PRK12939 short chain dehydrogenase; Provisional

Probab=99.54  E-value=1.4e-13  Score=106.08  Aligned_cols=121  Identities=22%  Similarity=0.186  Sum_probs=88.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++|||++|+||+++++.|+++ |++|+++.|+.+........+.. ..++.++.+|+.+...            .
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   83 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEA-GATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALG   83 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            36799999999999999999999999 88999988865443333333221 2468889999998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceec
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~  151 (190)
                      ++|+|||++|......    .....+..+++|+.++.++++.+.+    .+. ++|++||...+
T Consensus        84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~  147 (250)
T PRK12939         84 GLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTAL  147 (250)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhc
Confidence            6999999999654321    1223445688999999999887743    223 89999996644

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.53  E-value=2.5e-13  Score=104.87  Aligned_cols=121  Identities=15%  Similarity=0.009  Sum_probs=84.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC-CChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT-GSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~-~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      .+++++||||+|+||+++++.|+++ +++|++..|+.. ........+.. ...+.++.+|+.+...            .
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKE-GSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYG   83 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence            5689999999999999999999998 788777665332 11222222211 2356788899988642            3


Q ss_pred             CcCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~  152 (190)
                      ++|+|||+||........    ...+..+++|+.+..++++++.+.   ..++|++||...+.
T Consensus        84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~  146 (252)
T PRK06077         84 VADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR  146 (252)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC
Confidence            589999999964432211    123467899999999998888653   23899999977653

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=99.53  E-value=1.2e-13  Score=107.08  Aligned_cols=120  Identities=13%  Similarity=0.080  Sum_probs=87.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++|||++|.||+++++.|++. |+.|+++.+...  .+....+.. ..++..+++|+.|.+.            .
T Consensus         8 l~~k~~lItG~~~gIG~a~a~~l~~~-G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (253)
T PRK08993          8 LEGKVAVVTGCDTGLGQGMALGLAEA-GCDIVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFG   84 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            47899999999999999999999999 889888766432  222222221 2467888999998532            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~~  152 (190)
                      ++|++|||||......    ..++++..+++|+.++.++++++..    .+  .++|++||...+.
T Consensus        85 ~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~  150 (253)
T PRK08993         85 HIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQ  150 (253)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhcc
Confidence            5999999999654321    2234667899999999988887743    22  3899999977654

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.53  E-value=2.5e-13  Score=104.27  Aligned_cols=119  Identities=19%  Similarity=0.152  Sum_probs=86.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhh-hh-cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-WI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~-~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      +.+++++|||++|+||+++++.|+++ |+.|+++.|+.......... +. ...++.++.+|+.+.+.            
T Consensus         3 ~~~~~vlItG~sg~iG~~l~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (248)
T PRK05557          3 LEGKVALVTGASRGIGRAIAERLAAQ-GANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEF   81 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46689999999999999999999999 88887777765432222222 21 23468888899998642            


Q ss_pred             CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHHc----CC-eEEEEecce
Q 029640           96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~vSS~~  149 (190)
                      .++|+|||+||.......    .+.++..+++|+.++.++++.+...    +. ++|++||..
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~  144 (248)
T PRK05557         82 GGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVV  144 (248)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccc
Confidence            358999999986553221    2234567889999999998888643    33 799999864

>PRK07677 short chain dehydrogenase; Provisional

Probab=99.53  E-value=1.4e-13  Score=106.51  Aligned_cols=118  Identities=14%  Similarity=0.119  Sum_probs=85.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------CCc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      +++++||||+|+||+++++.|+++ |+.|++++|+..........+. ...++.++++|+++++.            ..+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEE-GANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI   79 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            478999999999999999999999 8899999887543332222221 12468889999998632            358


Q ss_pred             CEEEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEeccee
Q 029640           99 DQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEV  150 (190)
Q Consensus        99 d~vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~  150 (190)
                      |+|||+||.....    .+.+.++..+++|+.++.++++++.+    .+  .++|++||...
T Consensus        80 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~  141 (252)
T PRK07677         80 DALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYA  141 (252)
T ss_pred             cEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhh
Confidence            9999999854321    12223456799999999999988842    22  37999998653

>PLN02780 ketoreductase/ oxidoreductase

Probab=99.53  E-value=1.6e-13  Score=110.16  Aligned_cols=120  Identities=18%  Similarity=0.142  Sum_probs=86.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc---CCceEEEecccccc--c--------c--
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEP--L--------L--   95 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~--~--------~--   95 (190)
                      .++.++||||+|+||+++++.|+++ |++|++++|+.+.......++..   ...+..+.+|+.+.  +        .  
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~  130 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARK-GLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG  130 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence            5789999999999999999999999 88999999976554433333321   24677788898742  1        1  


Q ss_pred             CCcCEEEEccCCCCCc---cc---ccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecceec
Q 029640           96 IEVDQIYHLACPASPI---FY---KYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~---~~---~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~~  151 (190)
                      .++|++|||||...+.   ..   .+..+..+++|+.++..+.+++.    +.+ .++|++||...+
T Consensus       131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~  197 (320)
T PLN02780        131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAI  197 (320)
T ss_pred             CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhc
Confidence            1366999999975421   11   12344579999999998888764    334 389999997654

>PRK08278 short chain dehydrogenase; Provisional

Probab=99.53  E-value=4.9e-13  Score=104.87  Aligned_cols=118  Identities=14%  Similarity=0.043  Sum_probs=85.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh---hhh----hhh-cCCceEEEecccccccc------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLR----KWI-GHPRFELIRHDVTEPLL------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~---~~~----~~~-~~~~~~~~~~D~~~~~~------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+....   .+.    .+. ...++.++.+|+++.+.      
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~   82 (273)
T PRK08278          4 LSGKTLFITGASRGIGLAIALRAARD-GANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA   82 (273)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence            35789999999999999999999999 8899999887543211   111    111 12467889999998642      


Q ss_pred             ------CCcCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecc
Q 029640           96 ------IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTS  148 (190)
Q Consensus        96 ------~~~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~  148 (190)
                            .++|+|||+||........    +..+..+++|+.++.++++++..    .+ .++|++||.
T Consensus        83 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~  150 (273)
T PRK08278         83 KAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPP  150 (273)
T ss_pred             HHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence                  2699999999965432222    23456789999999999998853    22 378888873

>PRK06172 short chain dehydrogenase; Provisional

Probab=99.53  E-value=2.3e-13  Score=105.32  Aligned_cols=122  Identities=20%  Similarity=0.145  Sum_probs=88.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++|||++|+||.++++.|+++ |++|+++.|+.+........+.. ..++..+.+|+.+...            .
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g   83 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFARE-GAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYG   83 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            36799999999999999999999999 78999999876543333332221 2468889999998632            2


Q ss_pred             CcCEEEEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           97 EVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      ++|+|||++|.....  .   ..+.+++.+++|+.++..+++.+    .+.+. ++|++||...+.
T Consensus        84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~  149 (253)
T PRK06172         84 RLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLG  149 (253)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcc
Confidence            579999999864321  1   22345567899999998776654    33443 899999976554

>PRK12828 short chain dehydrogenase; Provisional

Probab=99.53  E-value=1.2e-13  Score=105.50  Aligned_cols=122  Identities=17%  Similarity=0.085  Sum_probs=89.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++|||++|+||+++++.|+++ |+.|+++.|+.....+....+. ...+..+.+|+.|...            .+
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAAR-GARVALIGRGAAPLSQTLPGVP-ADALRIGGIDLVDPQAARRAVDEVNRQFGR   82 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHC-CCeEEEEeCChHhHHHHHHHHh-hcCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            35789999999999999999999999 8899999997655444333332 2356778899988532            25


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecCC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGD  153 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~~  153 (190)
                      +|+|||++|......    ..+...+.+++|+.++.++++++.    +.+. ++|++||...+..
T Consensus        83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~  147 (239)
T PRK12828         83 LDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKA  147 (239)
T ss_pred             cCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccC
Confidence            899999998643221    122234568899999999888774    3344 8999999876653

>PRK06114 short chain dehydrogenase; Provisional

Probab=99.52  E-value=3.4e-13  Score=104.55  Aligned_cols=121  Identities=16%  Similarity=0.050  Sum_probs=87.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhhc-CCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG-HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~~-~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+.. ......+.. ..++.++.+|+.++..            
T Consensus         6 ~~~k~~lVtG~s~gIG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~   84 (254)
T PRK06114          6 LDGQVAFVTGAGSGIGQRIAIGLAQA-GADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAEL   84 (254)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46799999999999999999999999 88999998865432 222222221 2367888999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                      .++|+||||||......    ..+..+..+++|+.++..+++++.    +.+. ++|++||...+
T Consensus        85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~  149 (254)
T PRK06114         85 GALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGI  149 (254)
T ss_pred             CCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhc
Confidence            35899999999654321    123455678999999988877653    3343 89999986643

>PRK07074 short chain dehydrogenase; Provisional

Probab=99.52  E-value=2.9e-13  Score=104.97  Aligned_cols=116  Identities=18%  Similarity=0.148  Sum_probs=84.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCcC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD   99 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~d   99 (190)
                      +++++||||+|+||+++++.|+++ |++|++++|+..........+ ...++.++.+|+.+.+.            .++|
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~-g~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   79 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAA-GDRVLALDIDAAALAAFADAL-GDARFVPVACDLTDAASLAAALANAAAERGPVD   79 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            578999999999999999999998 889999998654433322222 23468889999998742            2489


Q ss_pred             EEEEccCCCCCccc-ccC---chhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecce
Q 029640          100 QIYHLACPASPIFY-KYN---PVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSE  149 (190)
Q Consensus       100 ~vi~~ag~~~~~~~-~~~---~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~  149 (190)
                      +|||++|....... +.+   ....+.+|+.++.++++.+.    +.+. ++|++||..
T Consensus        80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~  138 (257)
T PRK07074         80 VLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVN  138 (257)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchh
Confidence            99999986543211 112   23457799999998888773    3343 799999854

>PRK07576 short chain dehydrogenase; Provisional

Probab=99.52  E-value=2.4e-13  Score=106.09  Aligned_cols=120  Identities=18%  Similarity=0.157  Sum_probs=86.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+.+ |+.|+++.|+.+........+.. ..++.++.+|+++...            .
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~   85 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFARA-GANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFG   85 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            36789999999999999999999998 89999999875443322222211 2356788999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEeccee
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEV  150 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~  150 (190)
                      ++|+|||+||......    ..+.....+++|+.++.++++++..    .+.++|++||...
T Consensus        86 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~  147 (264)
T PRK07576         86 PIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQA  147 (264)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhh
Confidence            5899999998543211    1223455788999999999887754    2348999999653

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=99.52  E-value=3.2e-13  Score=104.69  Aligned_cols=121  Identities=15%  Similarity=0.100  Sum_probs=89.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+.+++.|+++ |+.|+++.|+.+........+.. ..++.++.+|+.++..            .
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   87 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGA-GAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHG   87 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            57899999999999999999999998 89999999975433332222221 3468889999998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceec
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~  151 (190)
                      ++|+|||++|......    ..+..++.+++|+.++.++++.+.+    .+. ++|++||...+
T Consensus        88 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~  151 (256)
T PRK06124         88 RLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQ  151 (256)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhc
Confidence            5899999999654321    1223456789999999998876643    444 89999996543

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=99.52  E-value=2e-13  Score=106.27  Aligned_cols=119  Identities=20%  Similarity=0.158  Sum_probs=85.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+.... +... ...++.++.+|+.+...            .+
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~-l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAE-GARVAVLDKSAAGLQE-LEAA-HGDAVVGVEGDVRSLDDHKEAVARCVAAFGK   79 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHH-HHhh-cCCceEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence            36799999999999999999999999 8999999886533222 1111 12357888999998531            35


Q ss_pred             cCEEEEccCCCCCc--c---cc----cCchhHHHHHHHHHHHHHHHHHHc----CCeEEEEecceec
Q 029640           98 VDQIYHLACPASPI--F---YK----YNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~--~---~~----~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~vSS~~~~  151 (190)
                      +|++|||||.....  .   ..    +.++..+++|+.++.++++++.+.    +.++|++||...+
T Consensus        80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~  146 (262)
T TIGR03325        80 IDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGF  146 (262)
T ss_pred             CCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEecccee
Confidence            89999999864211  1   11    124567999999999998888542    2378888886543

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.52  E-value=4.3e-13  Score=103.77  Aligned_cols=104  Identities=17%  Similarity=0.123  Sum_probs=76.2

Q ss_pred             cccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEE
Q 029640           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIY  102 (190)
Q Consensus        28 ~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi  102 (190)
                      +.+++++++||||+|+||+++++.|+++ |++|+++.|+......   ..... ....+.+|+.+.+     +.++|++|
T Consensus        10 ~~l~~k~~lITGas~gIG~ala~~l~~~-G~~Vi~~~r~~~~~~~---~~~~~-~~~~~~~D~~~~~~~~~~~~~iDilV   84 (245)
T PRK12367         10 STWQGKRIGITGASGALGKALTKAFRAK-GAKVIGLTHSKINNSE---SNDES-PNEWIKWECGKEESLDKQLASLDVLI   84 (245)
T ss_pred             HhhCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEECCchhhhh---hhccC-CCeEEEeeCCCHHHHHHhcCCCCEEE
Confidence            3357799999999999999999999999 8899988886522111   11111 2256788998764     34699999


Q ss_pred             EccCCCCCc-ccccCchhHHHHHHHHHHHHHHHHH
Q 029640          103 HLACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAK  136 (190)
Q Consensus       103 ~~ag~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~  136 (190)
                      ||||..... ...+.+...+++|+.++.++++.+.
T Consensus        85 nnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~  119 (245)
T PRK12367         85 LNHGINPGGRQDPENINKALEINALSSWRLLELFE  119 (245)
T ss_pred             ECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence            999964322 2234566789999999999988774

>PRK07060 short chain dehydrogenase; Provisional

Probab=99.52  E-value=3.9e-13  Score=103.32  Aligned_cols=118  Identities=20%  Similarity=0.150  Sum_probs=86.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------CCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d~v  101 (190)
                      +++++++|||++|+||+++++.|+++ |++|+++.|+.+...    .+.......++.+|+.+...        .++|+|
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~~~-g~~V~~~~r~~~~~~----~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~v   81 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALAQR-GARVVAAARNAAALD----RLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGL   81 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHC-CCEEEEEeCCHHHHH----HHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEE
Confidence            46789999999999999999999999 889999998654322    22112245778899988642        258999


Q ss_pred             EEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc----C--CeEEEEecceecC
Q 029640          102 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G--ARILLTSTSEVYG  152 (190)
Q Consensus       102 i~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~i~vSS~~~~~  152 (190)
                      ||+||......    ..+..++.+.+|+.++.++++++.+.    +  .++|++||...+.
T Consensus        82 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~  142 (245)
T PRK07060         82 VNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALV  142 (245)
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcC
Confidence            99998654321    12334556789999999998887542    2  4899999976554

>PRK12743 oxidoreductase; Provisional

Probab=99.52  E-value=2.6e-13  Score=105.34  Aligned_cols=117  Identities=15%  Similarity=0.045  Sum_probs=84.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh-hhhh-cCCceEEEecccccccc------------CC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++||||+|+||+++++.|+++ |++|+++.++.......+ ..+. ....+.++.+|+.+.+.            ..
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQ-GFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR   80 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999 889888765433222222 2221 13468899999998642            35


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc----C--CeEEEEecce
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G--ARILLTSTSE  149 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~i~vSS~~  149 (190)
                      +|+|||++|......    ..+..+..+.+|+.++..+++++...    +  .++|++||..
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~  142 (256)
T PRK12743         81 IDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVH  142 (256)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecc
Confidence            899999998654321    12345567999999999998877542    2  3899999853

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=99.52  E-value=1.6e-13  Score=99.64  Aligned_cols=119  Identities=18%  Similarity=0.200  Sum_probs=88.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC--CCCChhhhhhhh-cCCceEEEecccccccc------------CC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY--FTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~--~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      |+++||||++.||+++++.|+++++..|+++.|+  .+........+. ...++.++++|+.+.+.            ..
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5799999999999999999999955688888886  222222222222 24688999999998742            35


Q ss_pred             cCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~  151 (190)
                      +|++|||+|........    +..+..+++|+.+...+.+.+...+. ++|++||....
T Consensus        81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~  139 (167)
T PF00106_consen   81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGV  139 (167)
T ss_dssp             ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGT
T ss_pred             ccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhc
Confidence            99999999977643222    23446799999999999998887544 89999996543

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.52  E-value=3.1e-13  Score=107.76  Aligned_cols=121  Identities=19%  Similarity=0.068  Sum_probs=87.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhhhhhc-CCceEEEeccccccc-----------cC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIG-HPRFELIRHDVTEPL-----------LI   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~~-~~~~~~~~~D~~~~~-----------~~   96 (190)
                      +++++++||||+|+||+++++.|+++ |..|++.++...... .....+.. ..++.++.+|+.+.+           +.
T Consensus        10 l~~k~~lVTGas~gIG~~ia~~L~~~-Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g   88 (306)
T PRK07792         10 LSGKVAVVTGAAAGLGRAEALGLARL-GATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLG   88 (306)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            57899999999999999999999999 888888877543222 22222221 346888999999852           23


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----c-------C-CeEEEEecceec
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----V-------G-ARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~-------~-~~~i~vSS~~~~  151 (190)
                      ++|+||||||......    ..+.+...+++|+.++.++++++..    .       . .++|++||...+
T Consensus        89 ~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  159 (306)
T PRK07792         89 GLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGL  159 (306)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccc
Confidence            5899999999765421    2234556789999999999887642    1       1 379999986543

>PRK12320 hypothetical protein; Provisional

Probab=99.52  E-value=1.2e-13  Score=119.70  Aligned_cols=99  Identities=26%  Similarity=0.397  Sum_probs=80.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc----CCcCEEEEccCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL----IEVDQIYHLACPA  108 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~----~~~d~vi~~ag~~  108 (190)
                      |+|+||||+||||+++++.|+++ |++|++++|.....        ....++++.+|+.+...    .++|+|||+|+..
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~-G~~Vi~ldr~~~~~--------~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~   71 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAA-GHTVSGIAQHPHDA--------LDPRVDYVCASLRNPVLQELAGEADAVIHLAPVD   71 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-CCEEEEEeCChhhc--------ccCCceEEEccCCCHHHHHHhcCCCEEEEcCccC
Confidence            57999999999999999999999 89999998854321        12367889999988642    4799999999753


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecc
Q 029640          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS  148 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~  148 (190)
                      ..        ....+|+.++.+++++|++.++|+||+||.
T Consensus        72 ~~--------~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~  103 (699)
T PRK12320         72 TS--------APGGVGITGLAHVANAAARAGARLLFVSQA  103 (699)
T ss_pred             cc--------chhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            21        113589999999999999999999999986

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.51  E-value=3.9e-13  Score=104.28  Aligned_cols=122  Identities=16%  Similarity=0.074  Sum_probs=86.1

Q ss_pred             cCCCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCCC-----------CChhhhhhhh-cCCceEEEecccccccc
Q 029640           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFT-----------GSKDNLRKWI-GHPRFELIRHDVTEPLL   95 (190)
Q Consensus        30 ~~~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~~-----------~~~~~~~~~~-~~~~~~~~~~D~~~~~~   95 (190)
                      +++++++||||+|  .||.++++.|+++ |++|+++.|+..           ........+. ...++.++.+|+.+...
T Consensus         3 l~~k~vlItGas~~~giG~~la~~l~~~-G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   81 (256)
T PRK12748          3 LMKKIALVTGASRLNGIGAAVCRRLAAK-GIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYA   81 (256)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHc-CCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence            3678999999995  7999999999999 789999988621           1111111111 12468899999998642


Q ss_pred             ------------CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHHc----C-CeEEEEecceecC
Q 029640           96 ------------IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV----G-ARILLTSTSEVYG  152 (190)
Q Consensus        96 ------------~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~i~vSS~~~~~  152 (190)
                                  ..+|+|||+||.......    .+..+..+++|+.++.++++++...    + .++|++||...+.
T Consensus        82 ~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~  159 (256)
T PRK12748         82 PNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLG  159 (256)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccC
Confidence                        358999999986543211    2234567899999999999887542    3 3899999976544

>PRK05867 short chain dehydrogenase; Provisional

Probab=99.51  E-value=2.7e-13  Score=105.05  Aligned_cols=119  Identities=17%  Similarity=0.081  Sum_probs=86.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.|+.+........+.. ..++..+.+|+.++..            .
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEA-GAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELG   85 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46799999999999999999999999 89999998865443333222221 2467888999998642            3


Q ss_pred             CcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecce
Q 029640           97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~  149 (190)
                      ++|+||||||.......    .+..+..+++|+.++..+++++..    .+  .++|++||..
T Consensus        86 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~  148 (253)
T PRK05867         86 GIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMS  148 (253)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHH
Confidence            69999999996543211    223445689999999999887742    22  3688998854

>PRK06123 short chain dehydrogenase; Provisional

Probab=99.51  E-value=3.4e-13  Score=103.88  Aligned_cols=118  Identities=15%  Similarity=0.072  Sum_probs=81.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh-hhhh-cCCceEEEecccccccc------------CC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++||||+|+||+++++.|+++ |+.|.+..++.+.....+ ..+. ....+.++.+|+.|...            ..
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~-G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAER-GYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR   80 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHC-CCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence            468999999999999999999999 777777664432221112 1121 12357789999998642            25


Q ss_pred             cCEEEEccCCCCCcc-----cccCchhHHHHHHHHHHHHHHHHHHc--------CCeEEEEeccee
Q 029640           98 VDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV--------GARILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~--------~~~~i~vSS~~~  150 (190)
                      +|+|||+||......     ..+.....+++|+.++.++++.+.+.        +.++|++||...
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~  146 (248)
T PRK06123         81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAA  146 (248)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhh
Confidence            899999999754321     11234467999999999988877542        126999999754

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.51  E-value=1.8e-13  Score=105.22  Aligned_cols=122  Identities=16%  Similarity=0.082  Sum_probs=88.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhhc-CCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++ .|+..........+.. ..++.++.+|+.+...            
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~-g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKE-GAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKF   81 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            36789999999999999999999998 8888888 7765443332222221 3468889999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~~  152 (190)
                      .++|+|||++|......    ..+..+..+++|+.++.++++.+..    .+. ++|++||...+.
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~  147 (247)
T PRK05565         82 GKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLI  147 (247)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhcc
Confidence            26999999999763221    1223456789999998888877753    333 799999976443

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=99.51  E-value=1.3e-14  Score=108.84  Aligned_cols=145  Identities=21%  Similarity=0.215  Sum_probs=105.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIY  102 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi  102 (190)
                      .--+|+|||+-|.+|..+++.|..+-|. .|++.+-. +.....+      ..-.++..|+.|...       .++|.+|
T Consensus        43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~-KPp~~V~------~~GPyIy~DILD~K~L~eIVVn~RIdWL~  115 (366)
T KOG2774|consen   43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIV-KPPANVT------DVGPYIYLDILDQKSLEEIVVNKRIDWLV  115 (366)
T ss_pred             CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhcc-CCchhhc------ccCCchhhhhhccccHHHhhcccccceee
Confidence            4468999999999999999999998454 44444332 2222211      133556677777532       3699999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHH
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIM  182 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~s  182 (190)
                      |..+..+. ..+.+-....++|+.|..|+++.+++++.++...|+.++||+..+..-+.+.    +..++...|   |.|
T Consensus       116 HfSALLSA-vGE~NVpLA~~VNI~GvHNil~vAa~~kL~iFVPSTIGAFGPtSPRNPTPdl----tIQRPRTIY---GVS  187 (366)
T KOG2774|consen  116 HFSALLSA-VGETNVPLALQVNIRGVHNILQVAAKHKLKVFVPSTIGAFGPTSPRNPTPDL----TIQRPRTIY---GVS  187 (366)
T ss_pred             eHHHHHHH-hcccCCceeeeecchhhhHHHHHHHHcCeeEeecccccccCCCCCCCCCCCe----eeecCceee---chh
Confidence            99764332 2355666678999999999999999999999999999999986654433332    677788888   888


Q ss_pred             HHhhhhcC
Q 029640          183 KLIGELGG  190 (190)
Q Consensus       183 K~~~E~~~  190 (190)
                      |..+|..|
T Consensus       188 KVHAEL~G  195 (366)
T KOG2774|consen  188 KVHAELLG  195 (366)
T ss_pred             HHHHHHHH
Confidence            99999754

>PRK09072 short chain dehydrogenase; Provisional

Probab=99.51  E-value=4.8e-13  Score=104.20  Aligned_cols=120  Identities=13%  Similarity=0.083  Sum_probs=88.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----------CCc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----------IEV   98 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----------~~~   98 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+....++.++.+|+.|...           ..+
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i   81 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAA-GARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGI   81 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCC
Confidence            35789999999999999999999999 899999998754433333333224578899999998642           358


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEeccee
Q 029640           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEV  150 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~  150 (190)
                      |+|||+||......    ..+.....+++|+.++.++++.+.+    .+ .++|++||...
T Consensus        82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~  142 (263)
T PRK09072         82 NVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFG  142 (263)
T ss_pred             CEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhh
Confidence            99999998654321    1123456788999999999888753    33 37888888553

>PRK12744 short chain dehydrogenase; Provisional

Probab=99.51  E-value=5.2e-13  Score=103.64  Aligned_cols=117  Identities=14%  Similarity=0.108  Sum_probs=80.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhh----hhhc-CCceEEEecccccccc---------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR----KWIG-HPRFELIRHDVTEPLL---------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~----~~~~-~~~~~~~~~D~~~~~~---------   95 (190)
                      +++++++|||++|+||+++++.|+++ |+.|.++.++.........    .+.. ..++.++++|+.+.+.         
T Consensus         6 l~~k~vlItGa~~gIG~~~a~~l~~~-G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~   84 (257)
T PRK12744          6 LKGKVVLIAGGAKNLGGLIARDLAAQ-GAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK   84 (257)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHC-CCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH
Confidence            36789999999999999999999998 7776666544332222211    1111 2368889999998632         


Q ss_pred             ---CCcCEEEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEec
Q 029640           96 ---IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTST  147 (190)
Q Consensus        96 ---~~~d~vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS  147 (190)
                         .++|+|||+||.....    ...+..+..+++|+.++..+++.+...   ..++++++|
T Consensus        85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~s  146 (257)
T PRK12744         85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVT  146 (257)
T ss_pred             HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEec
Confidence               3589999999964321    122345567999999999999888653   236666643

>PRK07109 short chain dehydrogenase; Provisional

Probab=99.51  E-value=3.3e-13  Score=108.93  Aligned_cols=122  Identities=10%  Similarity=0.024  Sum_probs=87.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+........+.. ..++.++.+|+.|.+.            .
T Consensus         6 l~~k~vlITGas~gIG~~la~~la~~-G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g   84 (334)
T PRK07109          6 IGRQVVVITGASAGVGRATARAFARR-GAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG   84 (334)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence            36789999999999999999999999 88999999865443333322221 3467889999998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHH----HHHcCC-eEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~----~~~~~~-~~i~vSS~~~~~  152 (190)
                      ++|++|||||......    ..+..+..+++|+.+..++.+.    +++.+. ++|++||...+.
T Consensus        85 ~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~  149 (334)
T PRK07109         85 PIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYR  149 (334)
T ss_pred             CCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhcc
Confidence            5999999999654321    1223455788988877765544    445443 899999987664

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=99.50  E-value=4.3e-13  Score=104.34  Aligned_cols=119  Identities=15%  Similarity=0.088  Sum_probs=83.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhh-hhhc-CCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR-KWIG-HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~-~~~~-~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |+.|++..|+......... .+.. ..++.++.+|+.+.+.            
T Consensus         5 ~~~k~~lItGa~~gIG~~ia~~l~~~-G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~   83 (261)
T PRK08936          5 LEGKVVVITGGSTGLGRAMAVRFGKE-KAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEF   83 (261)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            47899999999999999999999999 7888887775432222221 2211 2467788999998642            


Q ss_pred             CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHH----HHHHcC--CeEEEEecce
Q 029640           96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLG----LAKRVG--ARILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~----~~~~~~--~~~i~vSS~~  149 (190)
                      .++|++||+||.......    .+..+..+++|+.++..+++    .+.+.+  .++|++||..
T Consensus        84 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~  147 (261)
T PRK08936         84 GTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVH  147 (261)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Confidence            258999999996544222    12345678999888876554    445444  3899999853

>PRK08703 short chain dehydrogenase; Provisional

Probab=99.50  E-value=3.9e-13  Score=103.20  Aligned_cols=119  Identities=19%  Similarity=0.169  Sum_probs=83.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEeccccccc-------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL-------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~-------------   94 (190)
                      +.+++++||||+|+||+++++.|+++ |+.|++++|+..........+..  ...+.++.+|+.+..             
T Consensus         4 l~~k~vlItG~sggiG~~la~~l~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~   82 (239)
T PRK08703          4 LSDKTILVTGASQGLGEQVAKAYAAA-GATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAE   82 (239)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHc-CCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHH
Confidence            46789999999999999999999998 88999999976544333332221  234567778886521             


Q ss_pred             -c-CCcCEEEEccCCCCC--ccc---ccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecce
Q 029640           95 -L-IEVDQIYHLACPASP--IFY---KYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSE  149 (190)
Q Consensus        95 -~-~~~d~vi~~ag~~~~--~~~---~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~  149 (190)
                       . .++|+|||+||....  ...   .+...+.+++|+.++.++++++.+    .+ .++|++||..
T Consensus        83 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~  149 (239)
T PRK08703         83 ATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESH  149 (239)
T ss_pred             HhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccc
Confidence             1 358999999996432  111   223445789999999888877743    33 3899998843

>PRK06057 short chain dehydrogenase; Provisional

Probab=99.50  E-value=2e-13  Score=105.87  Aligned_cols=118  Identities=21%  Similarity=0.115  Sum_probs=84.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+..........+    ...++++|+.+...            .+
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~   79 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAE-GATVVVGDIDPEAGKAAADEV----GGLFVPTDVTDEDAVNALFDTAAETYGS   79 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHc----CCcEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999 899999988644322222221    22578899998642            35


Q ss_pred             cCEEEEccCCCCCcc------cccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecce-ecC
Q 029640           98 VDQIYHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSE-VYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~-~~~  152 (190)
                      +|+|||+||...+..      ..+..+..+++|+.++.++++.+.    +.+ .++|++||.. +++
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g  146 (255)
T PRK06057         80 VDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMG  146 (255)
T ss_pred             CCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccC
Confidence            899999998653211      112355678999999988777653    333 3899998854 444

>PRK06483 dihydromonapterin reductase; Provisional

Probab=99.50  E-value=3e-13  Score=103.64  Aligned_cols=113  Identities=19%  Similarity=0.114  Sum_probs=82.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCcC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD   99 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~d   99 (190)
                      +++++||||+|+||+++++.|+++ |++|+++.|+.......+..    .++.++.+|+.+.+.            .++|
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   76 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQ-GQPVIVSYRTHYPAIDGLRQ----AGAQCIQADFSTNAGIMAFIDELKQHTDGLR   76 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCchhHHHHHHH----cCCEEEEcCCCCHHHHHHHHHHHHhhCCCcc
Confidence            478999999999999999999999 89999999876543333222    236788999998632            3599


Q ss_pred             EEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC---CeEEEEecce
Q 029640          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG---ARILLTSTSE  149 (190)
Q Consensus       100 ~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~---~~~i~vSS~~  149 (190)
                      ++|||||......    ..+..+..+++|+.++..+.+.+..    .+   .++|++||..
T Consensus        77 ~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~  137 (236)
T PRK06483         77 AIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYV  137 (236)
T ss_pred             EEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchh
Confidence            9999998643321    1234556789999999877666643    22   3799998854

>PRK06949 short chain dehydrogenase; Provisional

Probab=99.50  E-value=2.7e-13  Score=105.04  Aligned_cols=121  Identities=15%  Similarity=0.097  Sum_probs=87.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.|+.+........+. ...++.++.+|+.+.+.            .
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~-G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQA-GAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAG   85 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            46799999999999999999999999 8899999887554333222221 12467889999987632            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc-------------CCeEEEEecceec
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-------------GARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~-------------~~~~i~vSS~~~~  151 (190)
                      ++|+|||++|......    ..+.++..+++|+.++.++++.+...             +.++|++||...+
T Consensus        86 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~  157 (258)
T PRK06949         86 TIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGL  157 (258)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECccccc
Confidence            5899999999644321    12345567899999999888876421             1389999987654

>PRK07062 short chain dehydrogenase; Provisional

Probab=99.50  E-value=4.8e-13  Score=104.22  Aligned_cols=121  Identities=17%  Similarity=0.087  Sum_probs=87.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc---CCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+........+..   ..++..+.+|+.|...           
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEA-GASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR   84 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            47899999999999999999999999 88999999976544333222221   2367788999998632           


Q ss_pred             -CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceec
Q 029640           96 -IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~  151 (190)
                       .++|+||||||.......    .+.+...+++|+.+...+++.+    ++.+ .++|++||...+
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  150 (265)
T PRK07062         85 FGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLAL  150 (265)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEecccccc
Confidence             358999999996543211    2234556888988887776655    3333 389999997644

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.50  E-value=1.7e-13  Score=105.48  Aligned_cols=115  Identities=19%  Similarity=0.202  Sum_probs=81.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc----------------
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL----------------   95 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~----------------   95 (190)
                      ||+++||||+|+||+++++.|+++ |++|+++.|+.....  ..  ....++.++.+|+.+.+.                
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~-G~~v~~~~r~~~~~~--~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~   75 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQP-GIAVLGVARSRHPSL--AA--AAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDG   75 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhC-CCEEEEEecCcchhh--hh--ccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccC
Confidence            468999999999999999999998 889999888644211  11  112367888999998531                


Q ss_pred             CCcCEEEEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecceec
Q 029640           96 IEVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~~  151 (190)
                      ..+|++|||||...+.  .   ..+.+...+++|+.++..+.+.+.    +.+ .++|++||...+
T Consensus        76 ~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~  141 (243)
T PRK07023         76 ASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAAR  141 (243)
T ss_pred             CCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhc
Confidence            1478999999865431  1   122345678999999777666554    333 389999996644

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.50  E-value=2.6e-13  Score=104.41  Aligned_cols=114  Identities=17%  Similarity=0.121  Sum_probs=83.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc---------CCcCEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL---------IEVDQIY  102 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---------~~~d~vi  102 (190)
                      +++++||||+|+||+++++.|+++ |++|+++.|+.+.... +..  ...++.++++|+.+.+.         ..+|++|
T Consensus         1 ~~~vlItGas~giG~~la~~L~~~-G~~V~~~~r~~~~~~~-~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i   76 (240)
T PRK06101          1 MTAVLITGATSGIGKQLALDYAKQ-GWQVIACGRNQSVLDE-LHT--QSANIFTLAFDVTDHPGTKAALSQLPFIPELWI   76 (240)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHH-HHH--hcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEE
Confidence            368999999999999999999999 8999999986433221 111  12357888999998642         2378999


Q ss_pred             EccCCCCC-cc---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640          103 HLACPASP-IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus       103 ~~ag~~~~-~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      |+||.... ..   ..+..++.+++|+.++.++++.+...   +.++|++||..
T Consensus        77 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~  130 (240)
T PRK06101         77 FNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIA  130 (240)
T ss_pred             EcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechh
Confidence            99985432 11   11224467999999999999988753   34799998854

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=99.50  E-value=5.6e-13  Score=102.95  Aligned_cols=112  Identities=21%  Similarity=0.160  Sum_probs=85.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++|||++|+||+.+++.|+++ |++|+++.|+.      ...  ....+.++++|+.+...            .+
T Consensus         6 ~~~k~vlItGas~~iG~~la~~l~~~-G~~v~~~~~~~------~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (252)
T PRK08220          6 FSGKTVWVTGAAQGIGYAVALAFVEA-GAKVIGFDQAF------LTQ--EDYPFATFVLDVSDAAAVAQVCQRLLAETGP   76 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEecch------hhh--cCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            46789999999999999999999999 89999998865      111  13467889999998632            24


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEeccee
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~  150 (190)
                      +|+||||+|......    ..+.....+++|+.++.++++.+..    .+ .++|++||...
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~  138 (252)
T PRK08220         77 LDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAA  138 (252)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchh
Confidence            899999999754322    2234556799999999999888743    33 38999998653

>PRK05693 short chain dehydrogenase; Provisional

Probab=99.50  E-value=3.4e-13  Score=105.69  Aligned_cols=113  Identities=15%  Similarity=0.052  Sum_probs=83.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCcC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD   99 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~d   99 (190)
                      ||+++||||+|+||+++++.|+++ |++|++++|+....    ..+. ..++.++.+|+.+.+.            .++|
T Consensus         1 mk~vlItGasggiG~~la~~l~~~-G~~V~~~~r~~~~~----~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   74 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAA-GYEVWATARKAEDV----EALA-AAGFTAVQLDVNDGAALARLAEELEAEHGGLD   74 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHC-CCEEEEEeCCHHHH----HHHH-HCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            478999999999999999999998 89999998864322    2221 1246788899998532            3689


Q ss_pred             EEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEeccee
Q 029640          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEV  150 (190)
Q Consensus       100 ~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~  150 (190)
                      +|||+||......    ..+..+..+++|+.++.++++.+..    ...++|++||...
T Consensus        75 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~  133 (274)
T PRK05693         75 VLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSG  133 (274)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccc
Confidence            9999999654321    1233456789999999988887743    2247999998653

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=99.50  E-value=7.5e-13  Score=101.69  Aligned_cols=119  Identities=21%  Similarity=0.092  Sum_probs=84.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh-h-cCCceEEEecccccccc------------CCc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW-I-GHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~-~-~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      ++++|||++|+||+++++.|+++ |+.|+++.|+........... . ...++.++.+|+.+...            .++
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~-g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i   81 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLND-GYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPV   81 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            68999999999999999999999 799999988743111111111 1 12368899999998642            259


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      |+|||++|......    ..+..+..+++|+.++.++.+.+    ++.+. ++|++||...+.
T Consensus        82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~  144 (245)
T PRK12824         82 DILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLK  144 (245)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhcc
Confidence            99999998654321    22345567899999998885544    44444 899999976553

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=99.50  E-value=5.8e-13  Score=102.68  Aligned_cols=118  Identities=18%  Similarity=0.090  Sum_probs=80.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC-CCChhhhhhhh-cCCceEEEecccccccc------------CC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~-~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++||||+|+||+.+++.|+++ |++|.++.++. +........+. ...++.++.+|+.+...            .+
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAAR-GWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGR   80 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999999 77877664432 22222222221 12468899999997632            35


Q ss_pred             cCEEEEccCCCCCcc-----cccCchhHHHHHHHHHHHHHHHHHHc--------CCeEEEEeccee
Q 029640           98 VDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV--------GARILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~--------~~~~i~vSS~~~  150 (190)
                      +|+|||+||......     ..+.....+++|+.++..+++.+.+.        +.++|++||...
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~  146 (248)
T PRK06947         81 LDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIAS  146 (248)
T ss_pred             CCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhh
Confidence            999999999654311     11233456899999998887544321        126999998653

>PRK07791 short chain dehydrogenase; Provisional

Probab=99.50  E-value=5.5e-13  Score=105.36  Aligned_cols=120  Identities=18%  Similarity=0.122  Sum_probs=85.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC---------CCChhhhhhhhc-CCceEEEeccccccc-----
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF---------TGSKDNLRKWIG-HPRFELIRHDVTEPL-----   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~---------~~~~~~~~~~~~-~~~~~~~~~D~~~~~-----   94 (190)
                      +++++++||||++.||+++++.|+++ |+.|++++|+.         +.......++.. ..++.++.+|+.|.+     
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~-G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~   82 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAE-GARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL   82 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence            46799999999999999999999999 88888887754         211222222221 236778889999853     


Q ss_pred             -------cCCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----c---C----CeEEEEeccee
Q 029640           95 -------LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----V---G----ARILLTSTSEV  150 (190)
Q Consensus        95 -------~~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~---~----~~~i~vSS~~~  150 (190)
                             +.++|++|||||......    ..+.++..+++|+.++..+.+++..    .   +    .++|++||...
T Consensus        83 ~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~  160 (286)
T PRK07791         83 VDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAG  160 (286)
T ss_pred             HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhh
Confidence                   236999999999754321    1234566799999999888876632    1   1    37999998654

>TIGR02415 23BDH acetoin reductases

Probab=99.50  E-value=2.9e-13  Score=104.65  Aligned_cols=117  Identities=22%  Similarity=0.159  Sum_probs=84.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CCcC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~~d   99 (190)
                      ++++|||++|+||+++++.|+++ |++|+++.|+..........+.. ...+.++.+|+.|+..            ..+|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id   79 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKD-GFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD   79 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            57999999999999999999998 88999998864433333333222 3467889999998642            2589


Q ss_pred             EEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC--CeEEEEeccee
Q 029640          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEV  150 (190)
Q Consensus       100 ~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~i~vSS~~~  150 (190)
                      +|||+||......    ..+..+..+++|+.++..+++.+.    +.+  .++|++||...
T Consensus        80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~  140 (254)
T TIGR02415        80 VMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAG  140 (254)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhh
Confidence            9999998654321    123345679999999987776664    333  38999998654

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.49  E-value=5.5e-13  Score=102.84  Aligned_cols=122  Identities=15%  Similarity=0.084  Sum_probs=85.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++|||++|+||+.+++.|+++ |+.|++++|+..........+.. ..++.++++|+.+...            .
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~-G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQK-GAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFG   81 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            36789999999999999999999999 78899998865443333332221 3467889999988532            2


Q ss_pred             CcCEEEEccCCCCCcc-------------cccCchhHHHHHHHHHHHHHHHHH----Hc-C-CeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF-------------YKYNPVKTIKTNVIGTLNMLGLAK----RV-G-ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~-------------~~~~~~~~~~~n~~~~~~l~~~~~----~~-~-~~~i~vSS~~~~~  152 (190)
                      .+|+|||+||......             ..+.....+++|+.++..+.+.+.    +. . .++|++||...|+
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~  156 (253)
T PRK08217         82 QLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAG  156 (253)
T ss_pred             CCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccC
Confidence            4899999998543211             112344578899999987766543    22 2 3689999876654

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=99.49  E-value=4.8e-13  Score=103.01  Aligned_cols=118  Identities=20%  Similarity=0.137  Sum_probs=82.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC-CCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~-~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      ++++++|||++|+||+++++.|+++ |+.|++..++ .......+..+.. ...+..+.+|+.|.+.            .
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~-G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKD-GFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVG   80 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHc-CCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            5789999999999999999999999 7877775432 2222222222221 2357778899998632            3


Q ss_pred             CcCEEEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecce
Q 029640           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~  149 (190)
                      ++|+||||||.....    ...+.++..+++|+.++.++++.+    .+.+. ++|++||..
T Consensus        81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~  142 (246)
T PRK12938         81 EIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVN  142 (246)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechh
Confidence            589999999965421    122345567899999988776655    34454 899999864

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=99.49  E-value=4.6e-13  Score=104.13  Aligned_cols=118  Identities=14%  Similarity=0.126  Sum_probs=81.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCCcCE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVDQ  100 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~d~  100 (190)
                      |+++||||+|.||+++++.|+++ |++|+++.|+.+........+.....+.++++|+.|.+            +.++|+
T Consensus         1 m~vlItGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~   79 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKK-GARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDA   79 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            57999999999999999999999 88999998875543333333332346788999999863            236999


Q ss_pred             EEEccCCCCCc---ccc---cCchhHHHHHHHHHHHHHHHH----H-HcC-CeEEEEecceec
Q 029640          101 IYHLACPASPI---FYK---YNPVKTIKTNVIGTLNMLGLA----K-RVG-ARILLTSTSEVY  151 (190)
Q Consensus       101 vi~~ag~~~~~---~~~---~~~~~~~~~n~~~~~~l~~~~----~-~~~-~~~i~vSS~~~~  151 (190)
                      ||||||.....   ..+   +.....+.+|+.++..+.+.+    . +.+ .++|++||...+
T Consensus        80 li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~  142 (259)
T PRK08340         80 LVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVK  142 (259)
T ss_pred             EEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccC
Confidence            99999964311   111   123345677877766554432    2 223 389999997653

>PRK05855 short chain dehydrogenase; Validated

Probab=99.49  E-value=6.3e-13  Score=113.97  Aligned_cols=122  Identities=16%  Similarity=0.080  Sum_probs=89.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ...+.++.+|++|.+.            .
T Consensus       313 ~~~~~~lv~G~s~giG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g  391 (582)
T PRK05855        313 FSGKLVVVTGAGSGIGRETALAFARE-GAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHG  391 (582)
T ss_pred             CCCCEEEEECCcCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            35689999999999999999999999 88999999865443332222211 2367889999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC--CeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~i~vSS~~~~~  152 (190)
                      ++|+||||||......    ..+.....+++|+.++.++++++.    +.+  .++|++||...|.
T Consensus       392 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~  457 (582)
T PRK05855        392 VPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYA  457 (582)
T ss_pred             CCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc
Confidence            5899999999754321    123345678899999998887653    333  4899999987765

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.49  E-value=3.4e-13  Score=104.58  Aligned_cols=117  Identities=19%  Similarity=0.125  Sum_probs=85.1

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+  +.||+++++.|++. |++|++.+|+. .....+.++. ...+.++++|+++.+.            
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~-G~~Vi~~~r~~-~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   81 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQ-GATVIYTYQND-RMKKSLQKLV-DEEDLLVECDVASDESIERAFATIKERV   81 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHC-CCEEEEecCch-HHHHHHHhhc-cCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence            467999999999  79999999999999 89999998863 2222233332 2367889999998632            


Q ss_pred             CCcCEEEEccCCCCC-----cc---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640           96 IEVDQIYHLACPASP-----IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~-----~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      .++|++|||||...+     ..   ..+..+..+++|+.++..+.+.+...   +.++|++||..
T Consensus        82 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~  146 (252)
T PRK06079         82 GKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFG  146 (252)
T ss_pred             CCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccC
Confidence            359999999996532     11   12234557899999998888777543   24899999854

>PRK06139 short chain dehydrogenase; Provisional

Probab=99.49  E-value=5e-13  Score=107.67  Aligned_cols=120  Identities=13%  Similarity=0.122  Sum_probs=88.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~   97 (190)
                      .+++++||||+|+||+++++.|+++ |++|+++.|+.+...+....+.. ...+.++.+|+.|.+.            .+
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~-G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARR-GARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR   84 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            5789999999999999999999999 88999999875544333333221 3467788899998632            35


Q ss_pred             cCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceec
Q 029640           98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~  151 (190)
                      +|++|||||........    +..+..+++|+.++.++.+.+    .+.+ .++|++||...+
T Consensus        85 iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~  147 (330)
T PRK06139         85 IDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGF  147 (330)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhc
Confidence            89999999965543222    234457999999998887765    3344 389999986644

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.48  E-value=8.8e-13  Score=100.89  Aligned_cols=113  Identities=16%  Similarity=0.106  Sum_probs=85.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc------ccCCcCEEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP------LLIEVDQIYH  103 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~------~~~~~d~vi~  103 (190)
                      +++++++|||++|+||+++++.|+++ |++|+++.|+.....        ..++.++.+|+.++      ...++|+|||
T Consensus         3 l~~k~~lVtGas~~iG~~ia~~l~~~-G~~v~~~~r~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~id~lv~   73 (235)
T PRK06550          3 FMTKTVLITGAASGIGLAQARAFLAQ-GAQVYGVDKQDKPDL--------SGNFHFLQLDLSDDLEPLFDWVPSVDILCN   73 (235)
T ss_pred             CCCCEEEEcCCCchHHHHHHHHHHHC-CCEEEEEeCCccccc--------CCcEEEEECChHHHHHHHHHhhCCCCEEEE
Confidence            46789999999999999999999999 889999988643321        23578889999875      1246999999


Q ss_pred             ccCCCCC-----cccccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecceec
Q 029640          104 LACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVY  151 (190)
Q Consensus       104 ~ag~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~~  151 (190)
                      +||....     ....+..+..+++|+.++.++++++..    .+ .++|++||...+
T Consensus        74 ~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~  131 (235)
T PRK06550         74 TAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASF  131 (235)
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhc
Confidence            9985421     112234556799999999999887753    33 389999997654

>PRK07041 short chain dehydrogenase; Provisional

Probab=99.48  E-value=4.4e-13  Score=102.26  Aligned_cols=116  Identities=15%  Similarity=0.088  Sum_probs=85.8

Q ss_pred             EEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------CCcCEEEEccCC
Q 029640           36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQIYHLACP  107 (190)
Q Consensus        36 lItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d~vi~~ag~  107 (190)
                      +||||+|+||+++++.|+++ |+.|+++.|+.+........+....+++++.+|+.+...        .++|++||++|.
T Consensus         1 lItGas~~iG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~   79 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAE-GARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD   79 (230)
T ss_pred             CeecCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence            59999999999999999999 899999998654333222222223468889999998742        358999999986


Q ss_pred             CCCcc----cccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecC
Q 029640          108 ASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG  152 (190)
Q Consensus       108 ~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~  152 (190)
                      .....    ..+.....+++|+.++.++.++....+. ++|++||...+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~  129 (230)
T PRK07041         80 TPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVR  129 (230)
T ss_pred             CCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcC
Confidence            54321    1234566799999999999996655444 899999977664

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=99.48  E-value=6.6e-13  Score=102.12  Aligned_cols=119  Identities=17%  Similarity=0.097  Sum_probs=81.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhhc-CCceEEEecccccccc------------CC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~   97 (190)
                      |++++||||+|+||+++++.|+++ |+.|+++ .|+..........+.. ...+..+.+|+.|.+.            .+
T Consensus         1 ~~~~lItGa~g~iG~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~   79 (247)
T PRK09730          1 MAIALVTGGSRGIGRATALLLAQE-GYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEP   79 (247)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            368999999999999999999999 7888764 4543322222222221 2357889999998642            35


Q ss_pred             cCEEEEccCCCCCcc-----cccCchhHHHHHHHHHHHHHHHHHHc--------CCeEEEEecceec
Q 029640           98 VDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV--------GARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~--------~~~~i~vSS~~~~  151 (190)
                      +|+|||++|......     ..+.....+++|+.++.++++.+...        +.++|++||...+
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~  146 (247)
T PRK09730         80 LAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASR  146 (247)
T ss_pred             CCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhc
Confidence            899999999653211     11224467899999998877665332        2369999997643

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.48  E-value=9.4e-13  Score=102.47  Aligned_cols=119  Identities=15%  Similarity=0.113  Sum_probs=81.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhhc--CCceEEEeccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG--HPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~~--~~~~~~~~~D~~~~~------------   94 (190)
                      +++++++||||+++||+++++.|++. |++|+++.|+.... ......+..  ..++.++.+|++|.+            
T Consensus         6 l~~k~vlItGas~gIG~~ia~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (260)
T PRK08416          6 MKGKTLVISGGTRGIGKAIVYEFAQS-GVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED   84 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            47899999999999999999999999 88888876543222 221222211  246789999999863            


Q ss_pred             cCCcCEEEEccCCCCC-------ccc---ccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecce
Q 029640           95 LIEVDQIYHLACPASP-------IFY---KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSE  149 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~-------~~~---~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~  149 (190)
                      +.++|++|||||....       ...   .+.....+++|+.+...+.+.+.    +.+. ++|++||..
T Consensus        85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~  154 (260)
T PRK08416         85 FDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTG  154 (260)
T ss_pred             cCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccc
Confidence            2358999999985421       111   12234568888888776665553    3333 899999954

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.48  E-value=1.5e-12  Score=100.96  Aligned_cols=119  Identities=14%  Similarity=0.117  Sum_probs=94.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ..|+.|+||||++.||+.++.+++++ +..+.+.+.+.....+.........++..+.||+++.+.            ..
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~  114 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGD  114 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            47899999999999999999999999 888888888887777666666544579999999998642            35


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHH----Hc-CCeEEEEecce
Q 029640           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RV-GARILLTSTSE  149 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~-~~~~i~vSS~~  149 (190)
                      +|++|||||++....-    ++.-+..+++|+.+...+.++..    +. +.++|.++|..
T Consensus       115 V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~a  175 (300)
T KOG1201|consen  115 VDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVA  175 (300)
T ss_pred             ceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhh
Confidence            9999999998775322    22334579999999998877763    32 34899999865

>PRK06940 short chain dehydrogenase; Provisional

Probab=99.47  E-value=1.6e-12  Score=102.19  Aligned_cols=114  Identities=17%  Similarity=0.161  Sum_probs=83.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc-----------CCcC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-----------IEVD   99 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~-----------~~~d   99 (190)
                      ++.++|||+ |+||+++++.|. + |++|++++|+.+........+.. ..++.++++|+.|.+.           .++|
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~-G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-A-GKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-C-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            478899997 799999999995 6 89999999865433332222221 2367889999998632           3599


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceec
Q 029640          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVY  151 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~  151 (190)
                      +||||||....   ...+...+++|+.++.++++.+...   +.++|++||....
T Consensus        79 ~li~nAG~~~~---~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~  130 (275)
T PRK06940         79 GLVHTAGVSPS---QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGH  130 (275)
T ss_pred             EEEECCCcCCc---hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccc
Confidence            99999996532   3457788999999999999888543   2367777876543

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.47  E-value=1.4e-12  Score=101.47  Aligned_cols=118  Identities=18%  Similarity=0.053  Sum_probs=83.7

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------
Q 029640           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------   94 (190)
                      +++++++||||+  +.||+++++.|+++ |++|.+.+|+.+.. ..+..+.. .....++++|+.+.+            
T Consensus         8 ~~~k~~lItGas~g~GIG~a~a~~la~~-G~~v~l~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   85 (258)
T PRK07533          8 LAGKRGLVVGIANEQSIAWGCARAFRAL-GAELAVTYLNDKAR-PYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEE   85 (258)
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHc-CCEEEEEeCChhhH-HHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHH
Confidence            467999999998  59999999999999 88998888864321 12222211 123467889999863            


Q ss_pred             cCCcCEEEEccCCCCCc--------ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640           95 LIEVDQIYHLACPASPI--------FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      +.++|++|||||.....        ...+.++..+++|+.++.++.+.+...   +.++|++||..
T Consensus        86 ~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~  151 (258)
T PRK07533         86 WGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYG  151 (258)
T ss_pred             cCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence            23599999999864321        112345668999999999998877432   24799999854

>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]

Probab=99.46  E-value=1.8e-13  Score=105.26  Aligned_cols=115  Identities=19%  Similarity=0.208  Sum_probs=99.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccC-----CcCEEEEc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-----EVDQIYHL  104 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-----~~d~vi~~  104 (190)
                      ..|-.+.|+|||||+|+.+++.|.+. |.+|++..|.++...-+++-..+...+-+...|+.|++..     ..++|||.
T Consensus        59 ~sGiVaTVFGAtGFlGryvvnklak~-GSQviiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~sNVVINL  137 (391)
T KOG2865|consen   59 VSGIVATVFGATGFLGRYVVNKLAKM-GSQVIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHSNVVINL  137 (391)
T ss_pred             ccceEEEEecccccccHHHHHHHhhc-CCeEEEeccCCccchhheeecccccceeeeccCCCCHHHHHHHHHhCcEEEEe
Confidence            36778999999999999999999999 8999999999888887777666778899999999998754     48999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecce
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE  149 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~  149 (190)
                      .|--    .+.....+.++|..++.+|++.|++.|+ |+|++|+..
T Consensus       138 IGrd----~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lg  179 (391)
T KOG2865|consen  138 IGRD----YETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLG  179 (391)
T ss_pred             eccc----cccCCcccccccchHHHHHHHHHHhhChhheeehhhcc
Confidence            9732    2344556779999999999999999998 999999866

>PRK06484 short chain dehydrogenase; Validated

Probab=99.46  E-value=7.3e-13  Score=112.65  Aligned_cols=119  Identities=18%  Similarity=0.210  Sum_probs=88.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ..+++++||||+|+||+++++.|+++ |++|++++|+..........+  ..++..+.+|+.|++.            ..
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~  343 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAA-GDRLLIIDRDAEGAKKLAEAL--GDEHLSVQADITDEAAVESAFAQIQARWGR  343 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--CCceeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            37899999999999999999999999 889999988654333222222  2356778999998642            35


Q ss_pred             cCEEEEccCCCCC--cc---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceec
Q 029640           98 VDQIYHLACPASP--IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~--~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~  151 (190)
                      +|+||||||....  ..   ..+.++..+++|+.++.++++.+...   +.++|++||...+
T Consensus       344 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  405 (520)
T PRK06484        344 LDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASL  405 (520)
T ss_pred             CCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhc
Confidence            9999999996532  11   12345567999999999998887653   2489999997644

>PRK07831 short chain dehydrogenase; Provisional

Probab=99.46  E-value=2.7e-12  Score=99.95  Aligned_cols=121  Identities=21%  Similarity=0.183  Sum_probs=86.1

Q ss_pred             cccCCCEEEEEcccc-hHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEeccccccc---------
Q 029640           28 FFQSNMRILVTGGAG-FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL---------   94 (190)
Q Consensus        28 ~~~~~~~vlItG~~G-~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~---------   94 (190)
                      .++.+++++||||+| .||+++++.|+++ |+.|++++|+..........+.   ...++.++++|+.+..         
T Consensus        13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   91 (262)
T PRK07831         13 GLLAGKVVLVTAAAGTGIGSATARRALEE-GARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAA   91 (262)
T ss_pred             cccCCCEEEEECCCcccHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence            345789999999997 7999999999999 8889998886544333333221   2246888999999863         


Q ss_pred             ---cCCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecce
Q 029640           95 ---LIEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSE  149 (190)
Q Consensus        95 ---~~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~  149 (190)
                         +.++|+||||||.......    .+.....+++|+.++..+++.+..    .+  .++|++||..
T Consensus        92 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~  159 (262)
T PRK07831         92 VERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVL  159 (262)
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchh
Confidence               1358999999996443211    123445688999999888777643    32  3788888854

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.46  E-value=8e-13  Score=115.31  Aligned_cols=122  Identities=16%  Similarity=0.069  Sum_probs=89.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.|+.+........+. ...++.++.+|+.|.+.            .
T Consensus       369 ~~~k~vlItGas~giG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g  447 (657)
T PRK07201        369 LVGKVVLITGASSGIGRATAIKVAEA-GATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHG  447 (657)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            46789999999999999999999999 8899999987554333332222 13468889999998642            2


Q ss_pred             CcCEEEEccCCCCCccc------ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIFY------KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~------~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      ++|+||||||.......      .+.....+++|+.++.++++.+    ++.+. ++|++||...+.
T Consensus       448 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  514 (657)
T PRK07201        448 HVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQT  514 (657)
T ss_pred             CCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcC
Confidence            59999999996432111      1235567999999998887665    33444 899999987665

>PRK08017 oxidoreductase; Provisional

Probab=99.45  E-value=1.6e-12  Score=100.55  Aligned_cols=111  Identities=20%  Similarity=0.129  Sum_probs=80.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------------CCcC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------------IEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------------~~~d   99 (190)
                      ++++|||++|+||+++++.|+++ |++|+++.|+.+....    +. ..+++.+.+|+.+...             ..+|
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~~~~~~~----~~-~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~   76 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRR-GYRVLAACRKPDDVAR----MN-SLGFTGILLDLDDPESVERAADEVIALTDNRLY   76 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHhHH----HH-hCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCe
Confidence            68999999999999999999999 7899999886543221    11 1246788899987531             3478


Q ss_pred             EEEEccCCCCCcc----cccCchhHHHHHHHHHHHH----HHHHHHcCC-eEEEEecce
Q 029640          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNM----LGLAKRVGA-RILLTSTSE  149 (190)
Q Consensus       100 ~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l----~~~~~~~~~-~~i~vSS~~  149 (190)
                      .+||++|......    ..+..+..+++|+.++.++    ++.+++.+. ++|++||..
T Consensus        77 ~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~  135 (256)
T PRK08017         77 GLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVM  135 (256)
T ss_pred             EEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcc
Confidence            9999998644221    1223446789999988776    455555664 899999864

>PRK07069 short chain dehydrogenase; Validated

Probab=99.45  E-value=1.3e-12  Score=100.74  Aligned_cols=119  Identities=18%  Similarity=0.121  Sum_probs=81.9

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhh-hhhc---CCceEEEecccccccc------------CC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR-KWIG---HPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~-~~~~---~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++||||+|+||+++++.|+++ |++|++++|+.......+. .+..   ...+..+.+|+.+.+.            .+
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   79 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQ-GAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGG   79 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            3899999999999999999999 8999999886322222221 2211   1234567889998642            35


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHH----HHHHHHHHHHHcCC-eEEEEecceecCC
Q 029640           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVI----GTLNMLGLAKRVGA-RILLTSTSEVYGD  153 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~----~~~~l~~~~~~~~~-~~i~vSS~~~~~~  153 (190)
                      +|+|||+||.......    .+.....+++|+.    .+..+++.+++.+. ++|++||...+..
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~  144 (251)
T PRK07069         80 LSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKA  144 (251)
T ss_pred             ccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccC
Confidence            8999999986553211    1223456788888    55666677766654 8999999776553

>PRK06198 short chain dehydrogenase; Provisional

Probab=99.45  E-value=8.5e-13  Score=102.45  Aligned_cols=122  Identities=12%  Similarity=0.079  Sum_probs=87.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCe-EEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNE-VIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~-v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++|||++|+||+.+++.|+++ |+. |+++.|+.+........+. ....+.++.+|+.++..            
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~-G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAER-GAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF   82 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            47799999999999999999999999 666 9999886543332222221 12357788899998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~~  152 (190)
                      .++|+|||++|......    ..+..+..+++|+.++.++++.+.+    .+  .++|++||...++
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~  149 (260)
T PRK06198         83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHG  149 (260)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCccccc
Confidence            25899999998654221    1223345689999999999877743    22  3799999977665

>PRK05865 hypothetical protein; Provisional

Probab=99.45  E-value=6.6e-13  Score=117.34  Aligned_cols=98  Identities=29%  Similarity=0.420  Sum_probs=80.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~  107 (190)
                      |+|+||||+||||+++++.|+++ |++|++++|+....   .     ...+.++.+|+.|..     +.++|+|||+|+.
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~-G~~Vv~l~R~~~~~---~-----~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~   71 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQ-GHEVVGIARHRPDS---W-----PSSADFIAADIRDATAVESAMTGADVVAHCAWV   71 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-cCEEEEEECCchhh---c-----ccCceEEEeeCCCHHHHHHHHhCCCEEEECCCc
Confidence            57999999999999999999999 89999998863221   1     125788899999863     3469999999975


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecc
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS  148 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~  148 (190)
                      ..+         .+++|+.++.+++++|++.++ ++|++||.
T Consensus        72 ~~~---------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~  104 (854)
T PRK05865         72 RGR---------NDHINIDGTANVLKAMAETGTGRIVFTSSG  104 (854)
T ss_pred             ccc---------hHHHHHHHHHHHHHHHHHcCCCeEEEECCc
Confidence            321         468999999999999999887 89999995

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.44  E-value=1.3e-12  Score=102.48  Aligned_cols=118  Identities=14%  Similarity=0.070  Sum_probs=83.6

Q ss_pred             cCCCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||++  .||+++++.|+++ |++|++.+|+... ...+..+.. ......+++|+.|.+.           
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~-Ga~V~~~~r~~~~-~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~   82 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQ-GAELAFTYQGEAL-GKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKK   82 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhC-CCEEEEecCchHH-HHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            4679999999997  9999999999999 8999998876422 222222211 1223568899998642           


Q ss_pred             -CCcCEEEEccCCCCC-----cc---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640           96 -IEVDQIYHLACPASP-----IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~-----~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                       .++|++|||||....     ..   ..+.++..+++|+.++.++.+++...   +.++|++||..
T Consensus        83 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~  148 (271)
T PRK06505         83 WGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGG  148 (271)
T ss_pred             hCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCC
Confidence             369999999996532     11   12345567899999999888776432   24899999864

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.44  E-value=1.5e-12  Score=99.12  Aligned_cols=112  Identities=19%  Similarity=0.212  Sum_probs=81.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc----------CCcCEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL----------IEVDQI  101 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~----------~~~d~v  101 (190)
                      +++++|||++|+||+++++.|+++ |++|++++|+...... +..   ..++.++.+|+.|.+.          .++|+|
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~-~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~v   75 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLER-GWQVTATVRGPQQDTA-LQA---LPGVHIEKLDMNDPASLDQLLQRLQGQRFDLL   75 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHhC-CCEEEEEeCCCcchHH-HHh---ccccceEEcCCCCHHHHHHHHHHhhcCCCCEE
Confidence            378999999999999999999999 8999999997655332 222   2356778899988632          259999


Q ss_pred             EEccCCCCCcc------cccCchhHHHHHHHHHHHHHHHHHHc---C-CeEEEEecc
Q 029640          102 YHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKRV---G-ARILLTSTS  148 (190)
Q Consensus       102 i~~ag~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~---~-~~~i~vSS~  148 (190)
                      ||+||...+..      ..+.....+.+|+.++..+++.+...   + .+++++||.
T Consensus        76 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~  132 (225)
T PRK08177         76 FVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQ  132 (225)
T ss_pred             EEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccC
Confidence            99998754311      11234456788999999888877543   2 368888774

>PRK08324 short chain dehydrogenase; Validated

Probab=99.44  E-value=1.4e-12  Score=114.23  Aligned_cols=121  Identities=21%  Similarity=0.132  Sum_probs=89.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |.+|++++|+..........+.....+.++.+|+++...            .+
T Consensus       420 l~gk~vLVTGasggIG~~la~~L~~~-Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~  498 (681)
T PRK08324        420 LAGKVALVTGAAGGIGKATAKRLAAE-GACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGG  498 (681)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHC-cCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            36799999999999999999999999 789999998765433333323222468889999998642            26


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC--CeEEEEecceec
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~i~vSS~~~~  151 (190)
                      +|+||||||......    ..+.+...+++|+.++..+++.+.    +.+  .++|++||...+
T Consensus       499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~  562 (681)
T PRK08324        499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAV  562 (681)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCcccc
Confidence            999999999654322    122345678999999999977664    333  489999997644

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=99.43  E-value=2.4e-12  Score=112.60  Aligned_cols=120  Identities=20%  Similarity=0.212  Sum_probs=85.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~-----------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+..........+.   ....+..+++|+++...           
T Consensus       412 l~gkvvLVTGasggIG~aiA~~La~~-Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~  490 (676)
T TIGR02632       412 LARRVAFVTGGAGGIGRETARRLAAE-GAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALA  490 (676)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            36799999999999999999999999 8999999886544332222222   22357788999998642           


Q ss_pred             -CCcCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHH----HHcC--CeEEEEeccee
Q 029640           96 -IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVG--ARILLTSTSEV  150 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~--~~~i~vSS~~~  150 (190)
                       .++|+||||||........    +.....+++|+.+...+.+.+    ++.+  .++|++||...
T Consensus       491 ~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a  556 (676)
T TIGR02632       491 YGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNA  556 (676)
T ss_pred             cCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhh
Confidence             2699999999965432211    224456888988887766444    3333  48999999653

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.43  E-value=1.8e-12  Score=98.51  Aligned_cols=112  Identities=19%  Similarity=0.203  Sum_probs=82.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc----------CCcCEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL----------IEVDQI  101 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~----------~~~d~v  101 (190)
                      |++++|||++|+||+++++.|+++ |++|+++.|+.+...    .+.. ..+.++.+|+.+...          .++|+|
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~~-G~~v~~~~r~~~~~~----~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~v   74 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRAD-GWRVIATARDAAALA----ALQA-LGAEALALDVADPASVAGLAWKLDGEALDAA   74 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHhC-CCEEEEEECCHHHHH----HHHh-ccceEEEecCCCHHHHHHHHHHhcCCCCCEE
Confidence            478999999999999999999998 889999988644322    2211 245688999998632          248999


Q ss_pred             EEccCCCCCcc------cccCchhHHHHHHHHHHHHHHHHHHc----CCeEEEEecce
Q 029640          102 YHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSE  149 (190)
Q Consensus       102 i~~ag~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~vSS~~  149 (190)
                      ||++|......      ..+..+..+++|+.++.++++++.+.    +.+++++||..
T Consensus        75 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~  132 (222)
T PRK06953         75 VYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRM  132 (222)
T ss_pred             EECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcc
Confidence            99998753211      22345668999999999999888642    23788998864

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.43  E-value=3.3e-12  Score=100.24  Aligned_cols=118  Identities=17%  Similarity=0.068  Sum_probs=84.0

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEEeccccccc------------
Q 029640           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~------------   94 (190)
                      +.+++++||||+  +.||+++++.|+++ |++|+++.|+.. ..+.+..+... .....+++|+.+.+            
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~-G~~V~l~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   85 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAA-GAELAFTYQGDA-LKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK   85 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEcCchH-HHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh
Confidence            467999999997  89999999999999 889988877522 22223322211 23556889999863            


Q ss_pred             cCCcCEEEEccCCCCC-----c---ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640           95 LIEVDQIYHLACPASP-----I---FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~-----~---~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      +.++|++|||||....     .   ...+.++..+++|+.++..+++.+...   +.++|++||..
T Consensus        86 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~  151 (272)
T PRK08159         86 WGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYG  151 (272)
T ss_pred             cCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            2359999999996532     1   112345567999999999998887543   24899999854

>PRK06125 short chain dehydrogenase; Provisional

Probab=99.43  E-value=2.1e-12  Score=100.31  Aligned_cols=119  Identities=15%  Similarity=0.096  Sum_probs=86.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEeccccccc--------cCCcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL--------LIEVD   99 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~--------~~~~d   99 (190)
                      +++++++|||++|.||+++++.|+++ |++|++++|+.+........+..  ..++.++.+|+.+++        ..++|
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   83 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAE-GCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDID   83 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence            36799999999999999999999998 88999999875543332222221  236788899999864        24699


Q ss_pred             EEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecce
Q 029640          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSE  149 (190)
Q Consensus       100 ~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~  149 (190)
                      ++|||+|......    ..+.....+++|+.+...+++.+    .+.+ .++|++||..
T Consensus        84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~  142 (259)
T PRK06125         84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAA  142 (259)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence            9999998653221    12234567899999998888776    3333 3799998853

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=99.43  E-value=3.4e-12  Score=97.82  Aligned_cols=116  Identities=21%  Similarity=0.129  Sum_probs=80.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC-Chhhhhhhh-cCCceEEEecccccccc------------CCc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWI-GHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~-~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      ++++|||++|+||+++++.|+++ |+.|+++.|+... ......... ...++.++.+|+.++..            ..+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKD-GYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPI   79 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            57999999999999999999999 8888888773221 111111111 12468899999998642            358


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecce
Q 029640           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~  149 (190)
                      |+|||+||......    ..+.++..+++|+.++..+++.+    ++.+. ++|++||..
T Consensus        80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~  139 (242)
T TIGR01829        80 DVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVN  139 (242)
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchh
Confidence            99999998654321    12234566889999987765544    45554 899999854

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.43  E-value=1.8e-12  Score=99.12  Aligned_cols=117  Identities=21%  Similarity=0.161  Sum_probs=84.1

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhhhhhc-CCceEEEecccccccc------------CCcCE
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIG-HPRFELIRHDVTEPLL------------IEVDQ  100 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~~-~~~~~~~~~D~~~~~~------------~~~d~  100 (190)
                      ++|||++|+||+++++.|+++ |++|+++.|+..... .....+.. ...+.++.+|+.|...            ..+|+
T Consensus         1 vlItG~~g~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   79 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKE-GAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDI   79 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            589999999999999999999 889999988652221 22222211 2357889999998642            24899


Q ss_pred             EEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecce-ecC
Q 029640          101 IYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSE-VYG  152 (190)
Q Consensus       101 vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~-~~~  152 (190)
                      |||++|.....    ...+.++..+++|+.++.++++.+..    .+. ++|++||.. .++
T Consensus        80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g  141 (239)
T TIGR01830        80 LVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMG  141 (239)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCC
Confidence            99999975432    12234567889999999999988864    233 899999965 444

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.43  E-value=2.7e-12  Score=98.29  Aligned_cols=118  Identities=12%  Similarity=0.052  Sum_probs=84.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCCc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~   98 (190)
                      .+++++|||++|+||+++++.|+++ |++|+++.|+.+..+.....+.....+.++.+|+.+..            ..++
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   82 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKE-GAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI   82 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            5689999999999999999999999 88999999975433322222222346788999999863            2347


Q ss_pred             CEEEEccCCCCCc--ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640           99 DQIYHLACPASPI--FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      |.+||++|.....  ...+..+..++.|+.+...+++.+.+.   +.++|++||..
T Consensus        83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~  138 (238)
T PRK05786         83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMS  138 (238)
T ss_pred             CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecch
Confidence            9999999854321  111234456889999988887776543   34799999854

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.43  E-value=4e-12  Score=98.85  Aligned_cols=116  Identities=18%  Similarity=0.150  Sum_probs=81.3

Q ss_pred             cCCCEEEEEcc--cchHHHHHHHHHHhcCCCeEEEEcCCCC-CChhhhhhhhcCCceEEEeccccccc------------
Q 029640           30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~--~G~iG~~l~~~L~~~~~~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~------------   94 (190)
                      +.+++++|||+  ++.||+++++.|+++ |+.|++.+|+.. ...+.+.... ...+.++++|+.|.+            
T Consensus         5 ~~~k~~lItGa~~s~GIG~a~a~~la~~-G~~v~l~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~   82 (256)
T PRK07889          5 LEGKRILVTGVITDSSIAFHVARVAQEQ-GAEVVLTGFGRALRLTERIAKRL-PEPAPVLELDVTNEEHLASLADRVREH   82 (256)
T ss_pred             ccCCEEEEeCCCCcchHHHHHHHHHHHC-CCEEEEecCccchhHHHHHHHhc-CCCCcEEeCCCCCHHHHHHHHHHHHHH
Confidence            36789999999  899999999999999 889999887532 1112222111 125678899999864            


Q ss_pred             cCCcCEEEEccCCCCC-----cccc---cCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEec
Q 029640           95 LIEVDQIYHLACPASP-----IFYK---YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTST  147 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~-----~~~~---~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS  147 (190)
                      +.++|++|||||....     ...+   +.....+++|+.++.++.+.+...   +.++|++|+
T Consensus        83 ~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~  146 (256)
T PRK07889         83 VDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDF  146 (256)
T ss_pred             cCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEee
Confidence            2359999999997532     1112   223446899999999888777532   237888875

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.42  E-value=3.2e-12  Score=100.46  Aligned_cols=117  Identities=18%  Similarity=0.097  Sum_probs=83.3

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEeccccccc-----------
Q 029640           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL-----------   94 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~-----------   94 (190)
                      +.+|+++||||+  +.||+++++.|+++ |+.|++.+|+.+ ..+.+..+..  ... ..+++|+.|.+           
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la~~-G~~Vil~~r~~~-~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~   79 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACFEQ-GAELAFTYLNEA-LKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKK   79 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHHHC-CCEEEEEecCHH-HHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHH
Confidence            467999999997  79999999999999 889998888642 1222222211  112 57889999864           


Q ss_pred             -cCCcCEEEEccCCCCC-----c---ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640           95 -LIEVDQIYHLACPASP-----I---FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        95 -~~~~d~vi~~ag~~~~-----~---~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                       +.++|++|||||....     .   ...+..+..+++|+.++..+.+.+...   +.++|++||..
T Consensus        80 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~  146 (274)
T PRK08415         80 DLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLG  146 (274)
T ss_pred             HcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCC
Confidence             2359999999996431     1   112335567999999999988877542   24899999854

>PRK05884 short chain dehydrogenase; Provisional

Probab=99.42  E-value=4.5e-12  Score=96.67  Aligned_cols=112  Identities=16%  Similarity=0.228  Sum_probs=81.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc---------CCcCEEEE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL---------IEVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---------~~~d~vi~  103 (190)
                      |+++||||+|+||+++++.|+++ |++|+++.|+.+.......    ..++.++++|+.+...         .++|++||
T Consensus         1 m~vlItGas~giG~~ia~~l~~~-g~~v~~~~r~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~   75 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRND-GHKVTLVGARRDDLEVAAK----ELDVDAIVCDNTDPASLEEARGLFPHHLDTIVN   75 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----hccCcEEecCCCCHHHHHHHHHHHhhcCcEEEE
Confidence            47999999999999999999998 8899999886433222111    2246788899998642         25899999


Q ss_pred             ccCCCCC----c---c--cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640          104 LACPASP----I---F--YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus       104 ~ag~~~~----~---~--~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      |||....    .   .  ..+.....+++|+.++.++++++...   +.++|++||..
T Consensus        76 ~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~  133 (223)
T PRK05884         76 VPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN  133 (223)
T ss_pred             CCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC
Confidence            9984211    0   1  12345567999999999999887542   24899999843

>PRK06924 short chain dehydrogenase; Provisional

Probab=99.42  E-value=1.5e-12  Score=100.59  Aligned_cols=117  Identities=15%  Similarity=0.191  Sum_probs=78.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccC--------------C
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI--------------E   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--------------~   97 (190)
                      |++++||||+|+||+++++.|+++ |++|+++.|+..+....+... ...++.++.+|+.+....              +
T Consensus         1 ~k~vlItGasggiG~~ia~~l~~~-g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK06924          1 MRYVIITGTSQGLGEAIANQLLEK-GTHVISISRTENKELTKLAEQ-YNSNLTFHSLDLQDVHELETNFNEILSSIQEDN   78 (251)
T ss_pred             CcEEEEecCCchHHHHHHHHHHhc-CCEEEEEeCCchHHHHHHHhc-cCCceEEEEecCCCHHHHHHHHHHHHHhcCccc
Confidence            378999999999999999999999 889999988652221111111 124688899999986321              1


Q ss_pred             c--CEEEEccCCCCCcc-----cccCchhHHHHHHHHHHHHHHHH----HHcC--CeEEEEeccee
Q 029640           98 V--DQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLA----KRVG--ARILLTSTSEV  150 (190)
Q Consensus        98 ~--d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~--~~~i~vSS~~~  150 (190)
                      .  .++||+||...+..     ..+.....+++|+.++..+++.+    ++.+  .++|++||...
T Consensus        79 ~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~  144 (251)
T PRK06924         79 VSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAA  144 (251)
T ss_pred             CCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhh
Confidence            1  27899998654311     12334456888988877666555    3322  37999999653

>PLN00015 protochlorophyllide reductase

Probab=99.42  E-value=1.7e-12  Score=103.54  Aligned_cols=115  Identities=15%  Similarity=0.135  Sum_probs=82.7

Q ss_pred             EEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------CCcCEE
Q 029640           36 LVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IEVDQI  101 (190)
Q Consensus        36 lItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~~~d~v  101 (190)
                      +||||++.||.++++.|+++ | +.|++..|+.+........+. ....+.++.+|+.+.+.            .++|+|
T Consensus         1 lITGas~GIG~aia~~l~~~-G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l   79 (308)
T PLN00015          1 IITGASSGLGLATAKALAET-GKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVL   79 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEE
Confidence            59999999999999999999 7 899998886543333332221 12367888999998642            358999


Q ss_pred             EEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHH----HHcC---CeEEEEecceec
Q 029640          102 YHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLA----KRVG---ARILLTSTSEVY  151 (190)
Q Consensus       102 i~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~----~~~~---~~~i~vSS~~~~  151 (190)
                      |||||...+.  .   ..+..+..+++|+.++..+++.+    .+.+   .+||++||...+
T Consensus        80 InnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~  141 (308)
T PLN00015         80 VCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGN  141 (308)
T ss_pred             EECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccc
Confidence            9999975321  1   22345568999999988886655    3333   489999997654

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.42  E-value=2.4e-12  Score=100.39  Aligned_cols=119  Identities=16%  Similarity=0.051  Sum_probs=81.4

Q ss_pred             cCCCEEEEEcc--cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~--~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||  ++.||+++++.|+++ |.+|++.+|.. ...+...++... .....+++|+.|.+.           
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~-G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQ-GAELAFTYVVD-KLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKH   81 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEcCcH-HHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHH
Confidence            46789999996  679999999999999 88998887753 222333333211 234578899998642           


Q ss_pred             -CCcCEEEEccCCCCCc-----c-c---ccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEeccee
Q 029640           96 -IEVDQIYHLACPASPI-----F-Y---KYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEV  150 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~-----~-~---~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~  150 (190)
                       .++|++|||||.....     . .   .+.....+++|+.++..+.+.+..    .+.++|++||...
T Consensus        82 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~  150 (261)
T PRK08690         82 WDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGA  150 (261)
T ss_pred             hCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccc
Confidence             3599999999975421     0 1   112334578899888887776532    2247999998553

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=99.42  E-value=1e-12  Score=96.64  Aligned_cols=120  Identities=21%  Similarity=0.217  Sum_probs=90.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ++|.+|+||||+..||..+++.+.+. |.+|++..|+.+...+...   ..+.+....||+.|...            ..
T Consensus         3 ~tgnTiLITGG~sGIGl~lak~f~el-gN~VIi~gR~e~~L~e~~~---~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~   78 (245)
T COG3967           3 TTGNTILITGGASGIGLALAKRFLEL-GNTVIICGRNEERLAEAKA---ENPEIHTEVCDVADRDSRRELVEWLKKEYPN   78 (245)
T ss_pred             ccCcEEEEeCCcchhhHHHHHHHHHh-CCEEEEecCcHHHHHHHHh---cCcchheeeecccchhhHHHHHHHHHhhCCc
Confidence            46889999999999999999999999 8999999997665554433   25688889999998752            35


Q ss_pred             cCEEEEccCCCCCccc---cc---CchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecceecCC
Q 029640           98 VDQIYHLACPASPIFY---KY---NPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVYGD  153 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~---~~---~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~~~~  153 (190)
                      .+++|||||.......   ++   ..++-+.+|+.++..+..+.-    +.+ .-+|.|||.-.|-+
T Consensus        79 lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvP  145 (245)
T COG3967          79 LNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVP  145 (245)
T ss_pred             hheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCc
Confidence            9999999997764221   11   123457889999887766553    333 37999999665543

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.42  E-value=5.9e-12  Score=98.36  Aligned_cols=118  Identities=18%  Similarity=0.084  Sum_probs=82.7

Q ss_pred             cCCCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------
Q 029640           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------   94 (190)
                      +++++++||||++  .||+++++.|+++ |+.|++.+|+. ...+....+.. ......+.+|+.|.+            
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~-G~~vil~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   81 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHRE-GAELAFTYQND-KLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKV   81 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHC-CCEEEEEecch-hHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhh
Confidence            4679999999985  9999999999999 88898888762 22233333322 234567889999863            


Q ss_pred             cCCcCEEEEccCCCCCcc---------cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640           95 LIEVDQIYHLACPASPIF---------YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~~~---------~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      +.++|++|||||......         ..+.++..+++|+.++..+.+.+...   +.++|++||..
T Consensus        82 ~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~  148 (262)
T PRK07984         82 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLG  148 (262)
T ss_pred             cCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence            235999999999643211         11234456899999988888776432   23799999854

>PRK07832 short chain dehydrogenase; Provisional

Probab=99.42  E-value=4.4e-12  Score=99.30  Aligned_cols=117  Identities=16%  Similarity=0.133  Sum_probs=82.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccccc------------CCc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      |+++||||+|+||+++++.|+++ |+.|++++|+.+........+..  ...+.++.+|+.+.+.            .++
T Consensus         1 k~vlItGas~giG~~la~~la~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQ-GAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSM   79 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            47999999999999999999998 78899988865433322222221  2234567899988532            358


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----c--CCeEEEEeccee
Q 029640           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----V--GARILLTSTSEV  150 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~--~~~~i~vSS~~~  150 (190)
                      |+|||++|......    ..+..+..+++|+.++.++++++..    .  +.++|++||...
T Consensus        80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~  141 (272)
T PRK07832         80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAG  141 (272)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccc
Confidence            99999998653221    1233456799999999999988642    2  248999999653

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.41  E-value=9.7e-12  Score=96.79  Aligned_cols=118  Identities=14%  Similarity=0.075  Sum_probs=83.5

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh---hcCCceEEEeccccccc----------
Q 029640           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL----------   94 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~----------   94 (190)
                      +.+++++||||+  +.||+++++.|+++ |++|++..|+... .+.+..+   ....++.++++|+.|++          
T Consensus         5 ~~~k~~lItGa~~s~GIG~aia~~la~~-G~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   82 (257)
T PRK08594          5 LEGKTYVVMGVANKRSIAWGIARSLHNA-GAKLVFTYAGERL-EKEVRELADTLEGQESLLLPCDVTSDEEITACFETIK   82 (257)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHC-CCEEEEecCcccc-hHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHH
Confidence            467999999997  89999999999999 8899888775322 2222222   12346788999999864          


Q ss_pred             --cCCcCEEEEccCCCCC-----cc---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640           95 --LIEVDQIYHLACPASP-----IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        95 --~~~~d~vi~~ag~~~~-----~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                        +.++|++|||||....     ..   ..+.+...+++|+.++..+.+.+...   +.++|++||..
T Consensus        83 ~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~  150 (257)
T PRK08594         83 EEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLG  150 (257)
T ss_pred             HhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccC
Confidence              2359999999986431     11   11223456789999988887776542   24899999854

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.41  E-value=5.3e-12  Score=98.37  Aligned_cols=118  Identities=15%  Similarity=0.058  Sum_probs=82.5

Q ss_pred             cCCCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEEeccccccc------------
Q 029640           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~------------   94 (190)
                      +++++++||||++  .||+++++.|+++ |+.|++.+|+. ...+.+..+... ....++++|+.|++            
T Consensus         6 ~~~k~~lITGas~~~GIG~a~a~~la~~-G~~v~~~~r~~-~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (260)
T PRK06603          6 LQGKKGLITGIANNMSISWAIAQLAKKH-GAELWFTYQSE-VLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEK   83 (260)
T ss_pred             cCCcEEEEECCCCCcchHHHHHHHHHHc-CCEEEEEeCch-HHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHH
Confidence            3678999999997  8999999999999 88898887753 222223333221 22345789999863            


Q ss_pred             cCCcCEEEEccCCCCC-----cc---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640           95 LIEVDQIYHLACPASP-----IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~-----~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      +.++|++|||||....     ..   ..+.+...+++|+.++..+++.+...   +.++|++||..
T Consensus        84 ~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~  149 (260)
T PRK06603         84 WGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYG  149 (260)
T ss_pred             cCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCc
Confidence            2359999999986431     11   12335567999999999988876432   24899999855

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=99.41  E-value=5.2e-12  Score=96.84  Aligned_cols=115  Identities=17%  Similarity=0.114  Sum_probs=81.8

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhhc-CCceEEEecccccccc------------CCcCE
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG-HPRFELIRHDVTEPLL------------IEVDQ  100 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~~d~  100 (190)
                      ++||||+|+||.++++.|+++ |++|.++.|+.... ......+.. ..++.++.+|+.+...            ..+|+
T Consensus         1 vlItGas~giG~~~a~~l~~~-G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~   79 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAAD-GFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYG   79 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            589999999999999999999 88888887653322 222222221 2468899999998642            25899


Q ss_pred             EEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH-----HcC-CeEEEEeccee
Q 029640          101 IYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK-----RVG-ARILLTSTSEV  150 (190)
Q Consensus       101 vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~-----~~~-~~~i~vSS~~~  150 (190)
                      +||++|......    ..+.+...+++|+.++.++++.+.     +.+ .++|++||...
T Consensus        80 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~  139 (239)
T TIGR01831        80 VVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSG  139 (239)
T ss_pred             EEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhh
Confidence            999998654321    233456689999999999988652     233 38999999653

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK06484 short chain dehydrogenase; Validated

Probab=99.40  E-value=3e-12  Score=108.95  Aligned_cols=118  Identities=20%  Similarity=0.244  Sum_probs=87.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      .+++++|||++++||+++++.|+++ |++|+++.|+.+........+  ...+.++.+|+.+++.            .++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARA-GDQVVVADRNVERARERADSL--GPDHHALAMDVSDEAQIREGFEQLHREFGRI   80 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--CCceeEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence            6789999999999999999999999 899999988655443333322  2356788999998642            359


Q ss_pred             CEEEEccCCCCC------cccccCchhHHHHHHHHHHHHHHHHHHc----C--CeEEEEecceec
Q 029640           99 DQIYHLACPASP------IFYKYNPVKTIKTNVIGTLNMLGLAKRV----G--ARILLTSTSEVY  151 (190)
Q Consensus        99 d~vi~~ag~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~i~vSS~~~~  151 (190)
                      |+||||||...+      ....+..+..+++|+.++..+++++...    +  .++|++||....
T Consensus        81 D~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~  145 (520)
T PRK06484         81 DVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGL  145 (520)
T ss_pred             CEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccC
Confidence            999999986322      1122345668999999999988877532    2  389999996643

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=99.40  E-value=6.2e-12  Score=98.23  Aligned_cols=103  Identities=15%  Similarity=0.082  Sum_probs=71.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC-CChhhhhhhhc--CCceEEEecccccccc--------------
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT-GSKDNLRKWIG--HPRFELIRHDVTEPLL--------------   95 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~-~~~~~~~~~~~--~~~~~~~~~D~~~~~~--------------   95 (190)
                      ..++||||+|+||+++++.|+++ |++|+++.|+.. ........+..  ...+..+.+|++|.+.              
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~   80 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQE-GYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFR   80 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhC-CCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence            46899999999999999999999 888888765432 22222222211  2356678899998641              


Q ss_pred             --CCcCEEEEccCCCCCccc-cc--------------CchhHHHHHHHHHHHHHHHHH
Q 029640           96 --IEVDQIYHLACPASPIFY-KY--------------NPVKTIKTNVIGTLNMLGLAK  136 (190)
Q Consensus        96 --~~~d~vi~~ag~~~~~~~-~~--------------~~~~~~~~n~~~~~~l~~~~~  136 (190)
                        .++|+||||||...+... +.              .....+++|+.++..+.+.+.
T Consensus        81 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~  138 (267)
T TIGR02685        81 AFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFA  138 (267)
T ss_pred             ccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence              359999999996543211 11              133568999999999988764

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.40  E-value=6.5e-12  Score=103.41  Aligned_cols=104  Identities=14%  Similarity=0.123  Sum_probs=76.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~  104 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+........  ....+..+.+|+.|.+     +.++|++|||
T Consensus       176 l~gK~VLITGASgGIG~aLA~~La~~-G~~Vi~l~r~~~~l~~~~~~--~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInn  252 (406)
T PRK07424        176 LKGKTVAVTGASGTLGQALLKELHQQ-GAKVVALTSNSDKITLEING--EDLPVKTLHWQVGQEAALAELLEKVDILIIN  252 (406)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhh--cCCCeEEEEeeCCCHHHHHHHhCCCCEEEEC
Confidence            36799999999999999999999999 88999988865432221111  1124667889999864     3579999999


Q ss_pred             cCCCCC-cccccCchhHHHHHHHHHHHHHHHHH
Q 029640          105 ACPASP-IFYKYNPVKTIKTNVIGTLNMLGLAK  136 (190)
Q Consensus       105 ag~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~  136 (190)
                      ||.... ..+.+..++.+++|+.++.++++++.
T Consensus       253 AGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~l  285 (406)
T PRK07424        253 HGINVHGERTPEAINKSYEVNTFSAWRLMELFF  285 (406)
T ss_pred             CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            986432 12233456789999999999988874

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=99.39  E-value=6.8e-12  Score=97.66  Aligned_cols=119  Identities=16%  Similarity=0.095  Sum_probs=83.9

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCC--ChhhhhhhhcC-CceEEEecccccccc---------
Q 029640           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTG--SKDNLRKWIGH-PRFELIRHDVTEPLL---------   95 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~--~~~~~~~~~~~-~~~~~~~~D~~~~~~---------   95 (190)
                      +.+++++||||+  +.||+++++.|+++ |++|++..|+.+.  ..+.+..+... ..+.++++|+.|++.         
T Consensus         4 l~~k~~lItGas~~~GIG~aia~~la~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~   82 (258)
T PRK07370          4 LTGKKALVTGIANNRSIAWGIAQQLHAA-GAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIK   82 (258)
T ss_pred             cCCcEEEEeCCCCCCchHHHHHHHHHHC-CCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHH
Confidence            367899999986  89999999999999 8888887664332  22223333211 246678899998642         


Q ss_pred             ---CCcCEEEEccCCCCC-----cc---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640           96 ---IEVDQIYHLACPASP-----IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        96 ---~~~d~vi~~ag~~~~-----~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                         .++|++|||||....     ..   ..+.++..+++|+.++..+.+.+...   +.++|++||..
T Consensus        83 ~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~  150 (258)
T PRK07370         83 QKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLG  150 (258)
T ss_pred             HHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccc
Confidence               359999999996531     11   12334567899999999888876432   24899999854

>PRK08303 short chain dehydrogenase; Provisional

Probab=99.38  E-value=1.5e-11  Score=98.11  Aligned_cols=119  Identities=11%  Similarity=0.011  Sum_probs=82.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC----------hhhhhhhhc-CCceEEEeccccccc----
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----------KDNLRKWIG-HPRFELIRHDVTEPL----   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~----------~~~~~~~~~-~~~~~~~~~D~~~~~----   94 (190)
                      +.+++++||||++.||+++++.|++. |+.|++++|+....          ......+.. ..++.++++|+.+++    
T Consensus         6 l~~k~~lITGgs~GIG~aia~~la~~-G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~   84 (305)
T PRK08303          6 LRGKVALVAGATRGAGRGIAVELGAA-GATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA   84 (305)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence            46799999999999999999999999 88999998874211          111111111 235778899999863    


Q ss_pred             --------cCCcCEEEEcc-CCCC-----Ccccc---cCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecce
Q 029640           95 --------LIEVDQIYHLA-CPAS-----PIFYK---YNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSE  149 (190)
Q Consensus        95 --------~~~~d~vi~~a-g~~~-----~~~~~---~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~  149 (190)
                              +.++|++|||| |...     ....+   +...+.+++|+.+...+.+++..    .+ .+||++||..
T Consensus        85 ~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~  161 (305)
T PRK08303         85 LVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGT  161 (305)
T ss_pred             HHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcc
Confidence                    23599999999 7421     11111   22445688999998888776643    33 4899999854

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.37  E-value=1.2e-11  Score=103.55  Aligned_cols=119  Identities=19%  Similarity=0.139  Sum_probs=86.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++|||++|+||..+++.|+++ |.+|+++++...  .+.+..+....+...+.+|+.+...            .+
T Consensus       208 ~~g~~vlItGasggIG~~la~~l~~~-Ga~vi~~~~~~~--~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~  284 (450)
T PRK08261        208 LAGKVALVTGAARGIGAAIAEVLARD-GAHVVCLDVPAA--GEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGG  284 (450)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeCCcc--HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCC
Confidence            47899999999999999999999999 889998877422  2222222222234678899998632            25


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHcC-----CeEEEEecceec
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVG-----ARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~~~i~vSS~~~~  151 (190)
                      +|+|||+||......    ..+..+..+++|+.++.++.+.+....     .++|++||...+
T Consensus       285 id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~  347 (450)
T PRK08261        285 LDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGI  347 (450)
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhc
Confidence            899999999664321    223355678999999999999886532     389999997643

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.36  E-value=1e-11  Score=96.86  Aligned_cols=118  Identities=16%  Similarity=0.030  Sum_probs=82.0

Q ss_pred             cCCCEEEEEcc--cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEEeccccccc------------
Q 029640           30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~--~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~------------   94 (190)
                      +.+++++||||  ++.||+++++.|+++ |++|++.+|... ..+.+..+... .....+.+|+.|++            
T Consensus         4 l~~k~vlItGas~~~GIG~a~a~~l~~~-G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   81 (260)
T PRK06997          4 LAGKRILITGLLSNRSIAYGIAKACKRE-GAELAFTYVGDR-FKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQH   81 (260)
T ss_pred             cCCcEEEEeCCCCCCcHHHHHHHHHHHC-CCeEEEEccchH-HHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHH
Confidence            36799999996  689999999999999 889988765422 12223222211 22346789999864            


Q ss_pred             cCCcCEEEEccCCCCCc---------ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640           95 LIEVDQIYHLACPASPI---------FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      +.++|++|||||.....         ...+.++..+++|+.++..+.+++.+.   +.++|++||..
T Consensus        82 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~  148 (260)
T PRK06997         82 WDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLG  148 (260)
T ss_pred             hCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            23599999999965321         112234457899999999888877543   23899999855

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.36  E-value=2.4e-11  Score=94.38  Aligned_cols=119  Identities=17%  Similarity=0.113  Sum_probs=80.5

Q ss_pred             cCCCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCCC--C-----Chh---hh-hhhh-cCCceEEEecccccccc
Q 029640           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFT--G-----SKD---NL-RKWI-GHPRFELIRHDVTEPLL   95 (190)
Q Consensus        30 ~~~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~~--~-----~~~---~~-~~~~-~~~~~~~~~~D~~~~~~   95 (190)
                      +++++++||||+|  .||+++++.|+++ |..|+++.|...  .     ...   .+ ..+. ....+..+++|+.+.+.
T Consensus         4 l~~k~vlVtGas~~~giG~~~a~~l~~~-G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~   82 (256)
T PRK12859          4 LKNKVAVVTGVSRLDGIGAAICKELAEA-GADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDA   82 (256)
T ss_pred             cCCcEEEEECCCCCCChHHHHHHHHHHC-CCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence            4789999999995  8999999999999 788888653210  0     011   11 1111 12467888999998642


Q ss_pred             ------------CCcCEEEEccCCCCCc-c---cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecce
Q 029640           96 ------------IEVDQIYHLACPASPI-F---YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSE  149 (190)
Q Consensus        96 ------------~~~d~vi~~ag~~~~~-~---~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~  149 (190)
                                  ..+|+|||+||..... .   ..+..+..+++|+.++..+.+.+    ++.+ .++|++||..
T Consensus        83 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~  157 (256)
T PRK12859         83 PKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQ  157 (256)
T ss_pred             HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccc
Confidence                        2489999999865322 1   12234557999999988885444    3333 3899999964

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.35  E-value=1.5e-11  Score=89.29  Aligned_cols=118  Identities=16%  Similarity=0.133  Sum_probs=84.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh---hhhh-cCCceEEEecccccccc------------C
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---RKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~---~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      ++++|+||+|+||.++++.|++++.+.|.++.|+........   ..+. ...++.++.+|+.++..            .
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG   80 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            468999999999999999999983357888877654433211   1221 12467788899987531            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEeccee
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEV  150 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~  150 (190)
                      .+|+|||++|......    ..+..+..+++|+.++.++++++++.+. ++|++||...
T Consensus        81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~  139 (180)
T smart00822       81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAG  139 (180)
T ss_pred             CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHH
Confidence            4799999998654221    1234556799999999999999977665 7898888653

It uses NADPH to reduce the keto group to a hydroxy group.

>PRK05599 hypothetical protein; Provisional

Probab=99.35  E-value=1.6e-11  Score=94.97  Aligned_cols=116  Identities=14%  Similarity=0.104  Sum_probs=80.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccccc------------CCc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      |+++||||++.||+++++.|. + |++|+++.|+.+.......++..  ...+.++.+|+.|.+.            .++
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~-g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   78 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-H-GEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEI   78 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence            579999999999999999998 5 78999998876544443333322  2247889999998632            359


Q ss_pred             CEEEEccCCCCCcc-c---ccCchhHHHHHHHHHHHHHHH----HHHcC--CeEEEEeccee
Q 029640           99 DQIYHLACPASPIF-Y---KYNPVKTIKTNVIGTLNMLGL----AKRVG--ARILLTSTSEV  150 (190)
Q Consensus        99 d~vi~~ag~~~~~~-~---~~~~~~~~~~n~~~~~~l~~~----~~~~~--~~~i~vSS~~~  150 (190)
                      |++|||||...... .   .....+.+.+|+.+...+++.    +.+.+  .++|++||...
T Consensus        79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~  140 (246)
T PRK05599         79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAG  140 (246)
T ss_pred             CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence            99999999754321 1   112334567788877655544    33432  48999999654

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=99.34  E-value=1.6e-11  Score=101.42  Aligned_cols=119  Identities=28%  Similarity=0.334  Sum_probs=90.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcC--CCeEEEEcCCCCCCh--hhhhhh---------hcC-----CceEEEecccc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSK--DNLRKW---------IGH-----PRFELIRHDVT   91 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~--~~~v~~~~r~~~~~~--~~~~~~---------~~~-----~~~~~~~~D~~   91 (190)
                      ..+++|+|||||||+|+.+++.|+...  -..+.++.|...+..  +.+..+         .+.     .++..+.+|+.
T Consensus        10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~   89 (467)
T KOG1221|consen   10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS   89 (467)
T ss_pred             hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence            488999999999999999999999973  247888877655443  222221         111     57888889998


Q ss_pred             cccc-----------CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEecceec
Q 029640           92 EPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVY  151 (190)
Q Consensus        92 ~~~~-----------~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS~~~~  151 (190)
                      ++.+           .++|+|||+|+-+..   .+.......+|+.|+.++++.|++...  -++++||+++.
T Consensus        90 ~~~LGis~~D~~~l~~eV~ivih~AAtvrF---de~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n  159 (467)
T KOG1221|consen   90 EPDLGISESDLRTLADEVNIVIHSAATVRF---DEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSN  159 (467)
T ss_pred             CcccCCChHHHHHHHhcCCEEEEeeeeecc---chhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhhee
Confidence            7643           259999999986542   334455689999999999999999874  69999998876

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=99.34  E-value=4.9e-12  Score=92.41  Aligned_cols=118  Identities=19%  Similarity=0.103  Sum_probs=93.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      +.+.++||||+..||+++++.|.+. |+.|.+.+++....+.....+.....-..+.+|+.++..            ..+
T Consensus        13 ~sk~~~vtGg~sGIGrAia~~la~~-Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~p   91 (256)
T KOG1200|consen   13 MSKVAAVTGGSSGIGRAIAQLLAKK-GARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTP   91 (256)
T ss_pred             hcceeEEecCCchHHHHHHHHHHhc-CcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCC
Confidence            5688999999999999999999999 899999999877666655555544455678899998642            249


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc-------CCeEEEEecce
Q 029640           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-------GARILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~-------~~~~i~vSS~~  149 (190)
                      ++++||||++.+..    ..+++.+.+.+|+.+++.+.+++.+.       +.++|.+||.-
T Consensus        92 svlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIV  153 (256)
T KOG1200|consen   92 SVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIV  153 (256)
T ss_pred             cEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhh
Confidence            99999999887532    34567788999999999887776432       34899999943

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.34  E-value=2.1e-11  Score=91.15  Aligned_cols=99  Identities=25%  Similarity=0.325  Sum_probs=74.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------CCcCEEEEc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQIYHL  104 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d~vi~~  104 (190)
                      |+++|||++|+||+++++.|+++  .+|+++.|+..                .+++|+.+.+.        .++|+|||+
T Consensus         1 ~~vlItGas~giG~~la~~l~~~--~~vi~~~r~~~----------------~~~~D~~~~~~~~~~~~~~~~id~lv~~   62 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR--HEVITAGRSSG----------------DVQVDITDPASIRALFEKVGKVDAVVSA   62 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc--CcEEEEecCCC----------------ceEecCCChHHHHHHHHhcCCCCEEEEC
Confidence            47999999999999999999987  78888887532                34678877532        369999999


Q ss_pred             cCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640          105 ACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus       105 ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      ||......    ..+.+.+.+++|+.++.++++.+.+.   +.+++++||..
T Consensus        63 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~  114 (199)
T PRK07578         63 AGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGIL  114 (199)
T ss_pred             CCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccc
Confidence            99654321    12234556899999999999887653   23788888754

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=99.34  E-value=2.9e-11  Score=94.72  Aligned_cols=121  Identities=18%  Similarity=0.138  Sum_probs=89.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc----CCceEEEeccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPL-----------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~-----------   94 (190)
                      +.++.++|||++..||++++..|++. |.+|.+.+|+.+........+..    ..++..+.+|+.+..           
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~-Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~   84 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKA-GAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE   84 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999 99999999987766555444432    245889999999753           


Q ss_pred             --cCCcCEEEEccCCCCCcc-----cccCchhHHHHHHHH-HHHHHHHHH----HcCC-eEEEEecceec
Q 029640           95 --LIEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIG-TLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        95 --~~~~d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~-~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                        +.++|++|||||......     +++.++.++++|+.+ ...+.+.+.    +.+. .++++||...+
T Consensus        85 ~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~  154 (270)
T KOG0725|consen   85 KFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGV  154 (270)
T ss_pred             HhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccc
Confidence              346999999999665331     234466689999995 555555553    2233 78888886543

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=99.33  E-value=4.9e-11  Score=91.25  Aligned_cols=108  Identities=20%  Similarity=0.213  Sum_probs=76.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc--------cCCcCEEEE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~d~vi~  103 (190)
                      |+++||||+|+||+++++.|++++ +..+....|.....       ....++.++++|+.+..        ..++|+|||
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~   73 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD-------FQHDNVQWHALDVTDEAEIKQLSEQFTQLDWLIN   73 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc-------cccCceEEEEecCCCHHHHHHHHHhcCCCCEEEE
Confidence            589999999999999999999983 34565555543221       12347889999999864        246999999


Q ss_pred             ccCCCCCcc-------cc---cCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEec
Q 029640          104 LACPASPIF-------YK---YNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTST  147 (190)
Q Consensus       104 ~ag~~~~~~-------~~---~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS  147 (190)
                      |||......       ..   +.....+.+|+.++..+++.+..    .+ .+++++||
T Consensus        74 ~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss  132 (235)
T PRK09009         74 CVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISA  132 (235)
T ss_pred             CCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEee
Confidence            999764210       01   12335689999999888777643    23 37888887

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=99.33  E-value=4.1e-11  Score=92.51  Aligned_cols=121  Identities=21%  Similarity=0.197  Sum_probs=85.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhhc-C--CceEEEeccccc-cc----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG-H--PRFELIRHDVTE-PL----------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~~-~--~~~~~~~~D~~~-~~----------   94 (190)
                      +.+++++|||+++.||+.+++.|+++ |+.|++..|+.... .+.+..... .  ..+.+..+|+++ ..          
T Consensus         3 ~~~~~ilITGas~GiG~aia~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~   81 (251)
T COG1028           3 LSGKVALVTGASSGIGRAIARALARE-GARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAE   81 (251)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHH
Confidence            46799999999999999999999977 88888777765541 222221111 1  357778899997 42          


Q ss_pred             --cCCcCEEEEccCCCCC--cc---cccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEecceec
Q 029640           95 --LIEVDQIYHLACPASP--IF---YKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVY  151 (190)
Q Consensus        95 --~~~~d~vi~~ag~~~~--~~---~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS~~~~  151 (190)
                        +.++|++|||||....  ..   ..+..+..+.+|+.+...+.+.+...-.  ++|++||....
T Consensus        82 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~  147 (251)
T COG1028          82 EEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL  147 (251)
T ss_pred             HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc
Confidence              2349999999997542  11   2234566899999999888875544333  89999996644

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=99.33  E-value=2e-11  Score=94.83  Aligned_cols=118  Identities=12%  Similarity=0.052  Sum_probs=82.0

Q ss_pred             EEEEEcccchHHHHHHHHHHhc---CCCeEEEEcCCCCCChhhhhhhhc---CCceEEEeccccccccC-----------
Q 029640           34 RILVTGGAGFIGSHLVDKLMEN---EKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLLI-----------   96 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~---~~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~-----------   96 (190)
                      .++||||+++||+++++.|++.   .|++|+++.|+.+........+..   ...+.++.+|+.+....           
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~   81 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP   81 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence            5899999999999999999972   378999999876544433333322   34688899999986311           


Q ss_pred             -----CcCEEEEccCCCCCc---cc----ccCchhHHHHHHHHHHHHHHHHHH----c-C--CeEEEEecceec
Q 029640           97 -----EVDQIYHLACPASPI---FY----KYNPVKTIKTNVIGTLNMLGLAKR----V-G--ARILLTSTSEVY  151 (190)
Q Consensus        97 -----~~d~vi~~ag~~~~~---~~----~~~~~~~~~~n~~~~~~l~~~~~~----~-~--~~~i~vSS~~~~  151 (190)
                           +.|+||||||.....   ..    .+..+..+++|+.++..+.+.+.+    . +  .++|++||...+
T Consensus        82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~  155 (256)
T TIGR01500        82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAI  155 (256)
T ss_pred             ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhC
Confidence                 126999999964321   11    123456899999999887766532    2 2  379999996543

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=99.30  E-value=1e-11  Score=92.73  Aligned_cols=115  Identities=26%  Similarity=0.273  Sum_probs=86.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh--hhhhhhhcCCceEEEeccccccc------------c
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK--DNLRKWIGHPRFELIRHDVTEPL------------L   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~--~~~~~~~~~~~~~~~~~D~~~~~------------~   95 (190)
                      .+||++++||+.|.||+++.+.|++. +..+.++..+.+..+  .+++.+.+.+++.|+++|+++..            +
T Consensus         3 ~tGKna~vtggagGIGl~~sk~Ll~k-gik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~f   81 (261)
T KOG4169|consen    3 LTGKNALVTGGAGGIGLATSKALLEK-GIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATF   81 (261)
T ss_pred             ccCceEEEecCCchhhHHHHHHHHHc-CchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999 776666665555433  33444556789999999999853            3


Q ss_pred             CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHH----HHHHHHc-C---CeEEEEecce
Q 029640           96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM----LGLAKRV-G---ARILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l----~~~~~~~-~---~~~i~vSS~~  149 (190)
                      ..+|++||.||+..    +.+.+.++.+|+.+..+-    +.+..+. +   .-+|.+||..
T Consensus        82 g~iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~  139 (261)
T KOG4169|consen   82 GTIDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVA  139 (261)
T ss_pred             CceEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEecccc
Confidence            35999999999765    446788899998776554    4444333 2   2588999844

>PRK08862 short chain dehydrogenase; Provisional

Probab=99.29  E-value=4.3e-11  Score=91.60  Aligned_cols=118  Identities=10%  Similarity=0.062  Sum_probs=82.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------cC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~~   96 (190)
                      +++++++|||+++.||+++++.|+++ |++|.++.|+.+...+....+.. ..++..+.+|+.+.+            +.
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~-G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARL-GATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFN   81 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46799999999999999999999999 89999998876544333332221 235777889998863            23


Q ss_pred             -CcCEEEEccCCCCCc--cccc---CchhHHHHHHHHHHHHHHHH----HHcC--CeEEEEecc
Q 029640           97 -EVDQIYHLACPASPI--FYKY---NPVKTIKTNVIGTLNMLGLA----KRVG--ARILLTSTS  148 (190)
Q Consensus        97 -~~d~vi~~ag~~~~~--~~~~---~~~~~~~~n~~~~~~l~~~~----~~~~--~~~i~vSS~  148 (190)
                       ++|++|||||.....  ..+.   ...+.+++|+.++..+.+.+    .+.+  ..+|++||.
T Consensus        82 ~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~  145 (227)
T PRK08862         82 RAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISH  145 (227)
T ss_pred             CCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence             699999999743321  1121   23345677888877665544    3333  389999984

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.28  E-value=4.6e-11  Score=88.34  Aligned_cols=121  Identities=23%  Similarity=0.262  Sum_probs=80.7

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC---hhhhhhhhc-CCceEEEecccccccc------------CC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS---KDNLRKWIG-HPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~---~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++||||.|.||..+++.|++++..+++++.|+....   ...+..+.. ...+.++++|++|++.            ..
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~   81 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP   81 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence            6899999999999999999999667899999983211   223444432 4588999999998642            35


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecce-ecCCC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE-VYGDP  154 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~-~~~~~  154 (190)
                      ++.|||+||......    ..+.....+...+.++.+|.+++...+. .+|++||.. ++|..
T Consensus        82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~~  144 (181)
T PF08659_consen   82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGGP  144 (181)
T ss_dssp             EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-T
T ss_pred             cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccCc
Confidence            899999999765422    1223445688889999999999988887 788889977 45543

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=1.6e-11  Score=91.79  Aligned_cols=130  Identities=25%  Similarity=0.259  Sum_probs=96.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-------cCCcCEEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYH  103 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-------~~~~d~vi~  103 (190)
                      +++|+|||++|.+|+++.+.+..++. .+-.++.-                   .-.+|+++.+       ..++..|||
T Consensus         1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~-------------------skd~DLt~~a~t~~lF~~ekPthVIh   61 (315)
T KOG1431|consen    1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIG-------------------SKDADLTNLADTRALFESEKPTHVIH   61 (315)
T ss_pred             CceEEEecCCchHHHHHHHHHHhcCCCCcceEEec-------------------cccccccchHHHHHHHhccCCceeee
Confidence            47899999999999999999999842 12222211                   1124555432       357999999


Q ss_pred             ccCCCCCcc-cccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhH
Q 029640          104 LACPASPIF-YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGI  181 (190)
Q Consensus       104 ~ag~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~  181 (190)
                      .|+-++.-+ .-..+.+.+..|+.--.|++..|.++++ +++++.|+|+|+...+.|++|.......|......|   .+
T Consensus        62 lAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gY---sy  138 (315)
T KOG1431|consen   62 LAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGY---SY  138 (315)
T ss_pred             hHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHH---HH
Confidence            998555322 2345678899999999999999999998 899999999999999999999976555555555567   44


Q ss_pred             HH
Q 029640          182 MK  183 (190)
Q Consensus       182 sK  183 (190)
                      .|
T Consensus       139 AK  140 (315)
T KOG1431|consen  139 AK  140 (315)
T ss_pred             HH
Confidence            46

>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]

Probab=99.25  E-value=4.3e-11  Score=90.62  Aligned_cols=146  Identities=25%  Similarity=0.291  Sum_probs=117.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC-ChhhhhhhhcC------CceEEEecccccccc-------CC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIGH------PRFELIRHDVTEPLL-------IE   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~-~~~~~~~~~~~------~~~~~~~~D~~~~~~-------~~   97 (190)
                      .+..||||-+|.=|+.|++.|+.. |++|..+.|+... ....+.++...      .......+|++|...       .+
T Consensus        28 rkvALITGItGQDGSYLaEfLL~K-gYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ik  106 (376)
T KOG1372|consen   28 RKVALITGITGQDGSYLAEFLLSK-GYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIK  106 (376)
T ss_pred             ceEEEEecccCCCchHHHHHHHhC-CceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccC
Confidence            367999999999999999999999 8999988776543 33445555432      356677799999743       46


Q ss_pred             cCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC----CeEEEEecceecCCCCCCCCCCCCccCCCCCCcc
Q 029640           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG----ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMF  173 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~  173 (190)
                      ++-|.|.|+...+..+.+-++..-++...|+.+|+++.+.++    +|+...||...||.....|-+|.     +|+.|.
T Consensus       107 PtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~-----TPFyPR  181 (376)
T KOG1372|consen  107 PTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSET-----TPFYPR  181 (376)
T ss_pred             chhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccC-----CCCCCC
Confidence            889999999877766666777778889999999999988775    48999999999998888888888     799999


Q ss_pred             cchhhhhHHHHhh
Q 029640          174 SFVLKDGIMKLIG  186 (190)
Q Consensus       174 ~~y~~~~~sK~~~  186 (190)
                      ++|   +.+|..+
T Consensus       182 SPY---a~aKmy~  191 (376)
T KOG1372|consen  182 SPY---AAAKMYG  191 (376)
T ss_pred             Chh---HHhhhhh
Confidence            999   6668653

>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]

Probab=99.23  E-value=2e-10  Score=85.83  Aligned_cols=118  Identities=20%  Similarity=0.179  Sum_probs=82.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC-CCCChhhhhhh-hcCCceEEEeccccccc--------------c
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKW-IGHPRFELIRHDVTEPL--------------L   95 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~-~~~~~~~~~~~-~~~~~~~~~~~D~~~~~--------------~   95 (190)
                      .+.++||||+..||..|++.|++..+-++++..++ ++.....+..+ ....+++.++.|++..+              .
T Consensus         3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg~   82 (249)
T KOG1611|consen    3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVGS   82 (249)
T ss_pred             CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhccc
Confidence            36699999999999999999999866665555444 44433333332 23579999999999764              2


Q ss_pred             CCcCEEEEccCCCCCcccccC-----chhHHHHHHHHHHHHHHHH-------HHc------CC---eEEEEecce
Q 029640           96 IEVDQIYHLACPASPIFYKYN-----PVKTIKTNVIGTLNMLGLA-------KRV------GA---RILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~~~~-----~~~~~~~n~~~~~~l~~~~-------~~~------~~---~~i~vSS~~  149 (190)
                      .++|++|+|||+.........     .-+.+++|..++..+.+.+       +.+      .+   .+|++||.+
T Consensus        83 ~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~  157 (249)
T KOG1611|consen   83 DGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSA  157 (249)
T ss_pred             CCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccc
Confidence            369999999997765433222     3346899998887766654       111      12   588999865

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=99.23  E-value=2.1e-10  Score=91.32  Aligned_cols=118  Identities=11%  Similarity=0.084  Sum_probs=78.4

Q ss_pred             cCCCEEEEEcc--cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh----------cC----CceEEEecccc--
Q 029640           30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----------GH----PRFELIRHDVT--   91 (190)
Q Consensus        30 ~~~~~vlItG~--~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~----------~~----~~~~~~~~D~~--   91 (190)
                      +++|+++|||+  +..||.++++.|++. |.+|++ .|+.+..+.....+.          ..    .....+.+|+.  
T Consensus         7 l~gk~alITGa~~s~GIG~a~A~~la~~-Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   84 (303)
T PLN02730          7 LRGKRAFIAGVADDNGYGWAIAKALAAA-GAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFD   84 (303)
T ss_pred             CCCCEEEEeCCCCCCcHHHHHHHHHHHC-CCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecC
Confidence            58899999999  799999999999999 888877 444332221111110          00    11355677772  


Q ss_pred             ccc------------------------------cCCcCEEEEccCCCCC---c---ccccCchhHHHHHHHHHHHHHHHH
Q 029640           92 EPL------------------------------LIEVDQIYHLACPASP---I---FYKYNPVKTIKTNVIGTLNMLGLA  135 (190)
Q Consensus        92 ~~~------------------------------~~~~d~vi~~ag~~~~---~---~~~~~~~~~~~~n~~~~~~l~~~~  135 (190)
                      +.+                              +.++|++|||||....   .   ...+.+...+++|+.++..+.+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~  164 (303)
T PLN02730         85 TPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHF  164 (303)
T ss_pred             ccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            111                              2359999999974321   1   123345667999999999998877


Q ss_pred             HHc---CCeEEEEecce
Q 029640          136 KRV---GARILLTSTSE  149 (190)
Q Consensus       136 ~~~---~~~~i~vSS~~  149 (190)
                      ...   ..++|++||..
T Consensus       165 ~p~m~~~G~II~isS~a  181 (303)
T PLN02730        165 GPIMNPGGASISLTYIA  181 (303)
T ss_pred             HHHHhcCCEEEEEechh
Confidence            543   24899999855

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=99.22  E-value=8.3e-11  Score=92.71  Aligned_cols=96  Identities=22%  Similarity=0.324  Sum_probs=72.3

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----c------CC-cCEE
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----L------IE-VDQI  101 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~------~~-~d~v  101 (190)
                      +|+||||||++|+++++.|+++ +++|+++.|++....        ...+..+.+|+.|.+     +      .+ +|.|
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~-g~~V~~~~R~~~~~~--------~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v   71 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAA-SVPFLVASRSSSSSA--------GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAV   71 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhC-CCcEEEEeCCCcccc--------CCCCccccccCCCHHHHHHHHhcccCcCCceeEE
Confidence            4899999999999999999999 899999999765432        124556678888753     2      35 8999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceec
Q 029640          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY  151 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~  151 (190)
                      +|+++...      ..       .....+++++|++.++ |+|++||..++
T Consensus        72 ~~~~~~~~------~~-------~~~~~~~i~aa~~~gv~~~V~~Ss~~~~  109 (285)
T TIGR03649        72 YLVAPPIP------DL-------APPMIKFIDFARSKGVRRFVLLSASIIE  109 (285)
T ss_pred             EEeCCCCC------Ch-------hHHHHHHHHHHHHcCCCEEEEeeccccC
Confidence            99986321      00       1234678999999997 89999986643

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=99.13  E-value=1.6e-09  Score=78.68  Aligned_cols=103  Identities=14%  Similarity=0.204  Sum_probs=79.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----CCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----IEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~d~vi~~ag~  107 (190)
                      |+|.|+|++|.+|+.++++..++ ||+|+++.|++.+....       +.+..++.|+.|.+.     .+.|+||..-+.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~R-GHeVTAivRn~~K~~~~-------~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~   72 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKR-GHEVTAIVRNASKLAAR-------QGVTILQKDIFDLTSLASDLAGHDAVISAFGA   72 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhC-CCeeEEEEeChHhcccc-------ccceeecccccChhhhHhhhcCCceEEEeccC
Confidence            68999999999999999999999 99999999976654431       467888999998754     579999998875


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceec
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY  151 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~  151 (190)
                      ..+.     .++   ........+++..+..++ |++.|+.++..
T Consensus        73 ~~~~-----~~~---~~~k~~~~li~~l~~agv~RllVVGGAGSL  109 (211)
T COG2910          73 GASD-----NDE---LHSKSIEALIEALKGAGVPRLLVVGGAGSL  109 (211)
T ss_pred             CCCC-----hhH---HHHHHHHHHHHHHhhcCCeeEEEEcCccce
Confidence            4321     111   122335678888898887 99999987643

>PRK06720 hypothetical protein; Provisional

Probab=99.12  E-value=1e-09  Score=80.21  Aligned_cols=79  Identities=18%  Similarity=0.154  Sum_probs=59.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------cC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~~   96 (190)
                      +++++++||||+++||+.+++.|++. |.+|.+.+|+.+........+.. ...+.++.+|+.+..            +.
T Consensus        14 l~gk~~lVTGa~~GIG~aia~~l~~~-G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G   92 (169)
T PRK06720         14 LAGKVAIVTGGGIGIGRNTALLLAKQ-GAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFS   92 (169)
T ss_pred             cCCCEEEEecCCChHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999998 89999998865433222222211 235677889998753            23


Q ss_pred             CcCEEEEccCCCC
Q 029640           97 EVDQIYHLACPAS  109 (190)
Q Consensus        97 ~~d~vi~~ag~~~  109 (190)
                      ++|++|||||...
T Consensus        93 ~iDilVnnAG~~~  105 (169)
T PRK06720         93 RIDMLFQNAGLYK  105 (169)
T ss_pred             CCCEEEECCCcCC
Confidence            6999999999655

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.12  E-value=4.3e-10  Score=109.00  Aligned_cols=122  Identities=20%  Similarity=0.138  Sum_probs=89.9

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC----------h---------------------------
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----------K---------------------------   71 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~----------~---------------------------   71 (190)
                      +..+++++||||++.||..+++.|+++++++|++++|+....          .                           
T Consensus      1994 l~~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~ 2073 (2582)
T TIGR02813      1994 LNSDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALV 2073 (2582)
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcc
Confidence            346899999999999999999999998668999999872100          0                           


Q ss_pred             ----------hhhhhhh-cCCceEEEecccccccc-----------CCcCEEEEccCCCCCcc----cccCchhHHHHHH
Q 029640           72 ----------DNLRKWI-GHPRFELIRHDVTEPLL-----------IEVDQIYHLACPASPIF----YKYNPVKTIKTNV  125 (190)
Q Consensus        72 ----------~~~~~~~-~~~~~~~~~~D~~~~~~-----------~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~  125 (190)
                                ..+..+. ....+.++.+|++|...           .++|+|||+||......    ..+.+...+++|+
T Consensus      2074 ~~~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv 2153 (2582)
T TIGR02813      2074 RPVLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKV 2153 (2582)
T ss_pred             cccchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHH
Confidence                      0011111 12467889999999632           25999999999755322    2344666899999


Q ss_pred             HHHHHHHHHHHHcCC-eEEEEeccee
Q 029640          126 IGTLNMLGLAKRVGA-RILLTSTSEV  150 (190)
Q Consensus       126 ~~~~~l~~~~~~~~~-~~i~vSS~~~  150 (190)
                      .++.++++++..... +||++||...
T Consensus      2154 ~G~~~Ll~al~~~~~~~IV~~SSvag 2179 (2582)
T TIGR02813      2154 DGLLSLLAALNAENIKLLALFSSAAG 2179 (2582)
T ss_pred             HHHHHHHHHHHHhCCCeEEEEechhh
Confidence            999999999987664 7999999763

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.02  E-value=1.6e-09  Score=84.76  Aligned_cols=116  Identities=22%  Similarity=0.205  Sum_probs=86.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc------------CC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      .+++||||+..||++++..+..+ |+.|.++.|+.++.......+.   ....+.+..+|+.|.+.            ..
T Consensus        34 ~hi~itggS~glgl~la~e~~~~-ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~  112 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECKRE-GADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGP  112 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHHHc-cCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCC
Confidence            68999999999999999999999 9999999997655544443332   22346688899976531            24


Q ss_pred             cCEEEEccCCCCCccccc-C---chhHHHHHHHHHHHHHHHHHH----cC-C-eEEEEecce
Q 029640           98 VDQIYHLACPASPIFYKY-N---PVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSE  149 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~~-~---~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~vSS~~  149 (190)
                      +|.+|||||...+...++ +   .+..+++|+.++.+++++...    .. . +++.+||..
T Consensus       113 ~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~  174 (331)
T KOG1210|consen  113 IDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQL  174 (331)
T ss_pred             cceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhh
Confidence            999999999777655443 2   335689999999999876643    22 2 788898844

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=99.00  E-value=7.2e-09  Score=81.16  Aligned_cols=117  Identities=22%  Similarity=0.218  Sum_probs=86.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccC--------------
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI--------------   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--------------   96 (190)
                      ..+-|+|||.-...|+.+++.|.++ |..|++-.-.++..+ .+......++...++.|+++++..              
T Consensus        28 ~~k~VlITGCDSGfG~~LA~~L~~~-Gf~V~Agcl~~~gae-~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~  105 (322)
T KOG1610|consen   28 SDKAVLITGCDSGFGRLLAKKLDKK-GFRVFAGCLTEEGAE-SLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGED  105 (322)
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHhc-CCEEEEEeecCchHH-HHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcccc
Confidence            4577999999999999999999999 899999874433333 333333367888899999987532              


Q ss_pred             CcCEEEEccCCCCCcc-----cccCchhHHHHHHHHHHHHHHHH----HHcCCeEEEEecce
Q 029640           97 EVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLA----KRVGARILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~i~vSS~~  149 (190)
                      +.=.||||||+.....     ..++....+++|+.|+.++.+..    ++...|+|++||.+
T Consensus       106 gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~  167 (322)
T KOG1610|consen  106 GLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVL  167 (322)
T ss_pred             cceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccc
Confidence            4778999999654321     12345567999999998877665    45556999999954

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=98.95  E-value=7.4e-09  Score=79.28  Aligned_cols=97  Identities=25%  Similarity=0.372  Sum_probs=68.8

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCCCC
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACPAS  109 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~~~  109 (190)
                      |+|+||+|.+|+.+++.|++. +++|.++.|+..  ......+. ..+++.+.+|..|.+     +.++|+||++.+...
T Consensus         1 I~V~GatG~~G~~v~~~L~~~-~~~V~~l~R~~~--~~~~~~l~-~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSA-GFSVRALVRDPS--SDRAQQLQ-ALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TGCEEEEESSSH--HHHHHHHH-HTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred             CEEECCccHHHHHHHHHHHhC-CCCcEEEEeccc--hhhhhhhh-cccceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence            789999999999999999997 899999999752  11222222 236688899998764     568999999886432


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEec
Q 029640          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS  147 (190)
                      .            .......++++++++.+++.+..||
T Consensus        77 ~------------~~~~~~~~li~Aa~~agVk~~v~ss  102 (233)
T PF05368_consen   77 P------------SELEQQKNLIDAAKAAGVKHFVPSS  102 (233)
T ss_dssp             C------------CHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred             h------------hhhhhhhhHHHhhhccccceEEEEE
Confidence            1            1233457899999999984444565

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.94  E-value=4.5e-09  Score=78.12  Aligned_cols=116  Identities=18%  Similarity=0.169  Sum_probs=85.4

Q ss_pred             CCEEEEEc-ccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------------CC
Q 029640           32 NMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------------IE   97 (190)
Q Consensus        32 ~~~vlItG-~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------------~~   97 (190)
                      .+.|+||| +.|.||.+|++++.+. |+.|.+..|+.+...+...    ..++.....|+.+++.             .+
T Consensus         7 ~k~VlItgcs~GGIG~ala~ef~~~-G~~V~AtaR~~e~M~~L~~----~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gk   81 (289)
T KOG1209|consen    7 PKKVLITGCSSGGIGYALAKEFARN-GYLVYATARRLEPMAQLAI----QFGLKPYKLDVSKPEEVVTVSGEVRANPDGK   81 (289)
T ss_pred             CCeEEEeecCCcchhHHHHHHHHhC-CeEEEEEccccchHhhHHH----hhCCeeEEeccCChHHHHHHHHHHhhCCCCc
Confidence            37788886 5799999999999999 9999999998776654432    3367888899998742             24


Q ss_pred             cCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHH----HcCCeEEEEecceecC
Q 029640           98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~vSS~~~~~  152 (190)
                      +|+++||||........    ..-+..|++|+-|..+..++..    +.+..+|++.|...|-
T Consensus        82 ld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~v  144 (289)
T KOG1209|consen   82 LDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVV  144 (289)
T ss_pred             eEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEe
Confidence            99999999965532211    2244578999888777666554    3344899999966543

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=98.93  E-value=1.4e-08  Score=80.83  Aligned_cols=119  Identities=13%  Similarity=0.089  Sum_probs=72.9

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCC---------CCCh-hhhhh--------------h-hcCCc
Q 029640           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYF---------TGSK-DNLRK--------------W-IGHPR   82 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~---------~~~~-~~~~~--------------~-~~~~~   82 (190)
                      +++|+++|||++  ..||+++++.|+++ |.+|.+.++.+         +... .....              + .+...
T Consensus         6 ~~gk~alITGa~~~~GIG~a~A~~la~~-Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~   84 (299)
T PRK06300          6 LTGKIAFIAGIGDDQGYGWGIAKALAEA-GATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDT   84 (299)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHC-CCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcCC
Confidence            478999999995  89999999999999 89988865431         0000 00000              0 00001


Q ss_pred             eEEEeccccc---------c-----------ccCCcCEEEEccCCCC---Ccc---cccCchhHHHHHHHHHHHHHHHHH
Q 029640           83 FELIRHDVTE---------P-----------LLIEVDQIYHLACPAS---PIF---YKYNPVKTIKTNVIGTLNMLGLAK  136 (190)
Q Consensus        83 ~~~~~~D~~~---------~-----------~~~~~d~vi~~ag~~~---~~~---~~~~~~~~~~~n~~~~~~l~~~~~  136 (190)
                      .+-+.+|+.+         +           .+.++|++|||||...   ...   ..+.++..+++|+.++.++.+++.
T Consensus        85 ~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~  164 (299)
T PRK06300         85 PEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFG  164 (299)
T ss_pred             CEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence            1112122222         0           1235999999998532   111   123455678999999999988875


Q ss_pred             Hc---CCeEEEEecce
Q 029640          137 RV---GARILLTSTSE  149 (190)
Q Consensus       137 ~~---~~~~i~vSS~~  149 (190)
                      ..   ..++|++||..
T Consensus       165 p~m~~~G~ii~iss~~  180 (299)
T PRK06300        165 PIMNPGGSTISLTYLA  180 (299)
T ss_pred             HHhhcCCeEEEEeehh
Confidence            43   23788888744

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=98.91  E-value=3.9e-09  Score=81.18  Aligned_cols=110  Identities=22%  Similarity=0.224  Sum_probs=81.4

Q ss_pred             ccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------c-CCcCEEEE
Q 029640           39 GGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------L-IEVDQIYH  103 (190)
Q Consensus        39 G~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~-~~~d~vi~  103 (190)
                      |++  +.||+++++.|+++ |++|++++|+.+.....+..+........+.+|+.+++            + .++|++||
T Consensus         1 g~~~s~GiG~aia~~l~~~-Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~   79 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEE-GANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVN   79 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHT-TEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEE
T ss_pred             CCCCCCChHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEe
Confidence            556  99999999999999 89999999987765444555543334557999999863            3 57999999


Q ss_pred             ccCCCCC-----cc---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640          104 LACPASP-----IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus       104 ~ag~~~~-----~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      |+|....     ..   ..+.....+++|+.+...+++.+.+.   +.++|++||..
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~  136 (241)
T PF13561_consen   80 NAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIA  136 (241)
T ss_dssp             EEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGG
T ss_pred             cccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchh
Confidence            9986553     11   11234567899999999998888543   23799999854

...

>PTZ00325 malate dehydrogenase; Provisional

Probab=98.87  E-value=4.5e-08  Score=78.42  Aligned_cols=116  Identities=16%  Similarity=0.072  Sum_probs=80.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCCChhhhhhhhcC-CceEEEe-ccccc--cccCCcCEEEEc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGH-PRFELIR-HDVTE--PLLIEVDQIYHL  104 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~-~D~~~--~~~~~~d~vi~~  104 (190)
                      .+|++|.|+|++|.||..++..|+.++ ..++.++++.  .......++.+. ....... .|..+  +++.++|+||++
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~--~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVit   83 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV--GAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLIC   83 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC--CCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEEC
Confidence            478899999999999999999998663 3578888882  222211122111 1222221 12122  456789999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecce
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE  149 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~  149 (190)
                      +|....  ...+..+.+..|+..+.++++.+++++. ++|+++|--
T Consensus        84 aG~~~~--~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP  127 (321)
T PTZ00325         84 AGVPRK--PGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP  127 (321)
T ss_pred             CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence            996432  2345677899999999999999999997 899998844

>PRK08309 short chain dehydrogenase; Provisional

Probab=98.86  E-value=7.9e-09  Score=76.11  Aligned_cols=98  Identities=14%  Similarity=0.073  Sum_probs=68.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCcCE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVDQ  100 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~d~  100 (190)
                      |+++||||+|++|. +++.|+++ |++|.++.|+.+........+.....+.++.+|+.|.+.            ..+|+
T Consensus         1 m~vlVtGGtG~gg~-la~~L~~~-G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~   78 (177)
T PRK08309          1 MHALVIGGTGMLKR-VSLWLCEK-GFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDL   78 (177)
T ss_pred             CEEEEECcCHHHHH-HHHHHHHC-cCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeE
Confidence            57999999988775 99999999 899999888654332222222223468888999998642            24777


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCe-----EEEEeccee
Q 029640          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-----ILLTSTSEV  150 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~i~vSS~~~  150 (190)
                      +|+.+-                  ..++.++.++|++.+++     ++++=...+
T Consensus        79 lv~~vh------------------~~~~~~~~~~~~~~gv~~~~~~~~h~~gs~~  115 (177)
T PRK08309         79 AVAWIH------------------SSAKDALSVVCRELDGSSETYRLFHVLGSAA  115 (177)
T ss_pred             EEEecc------------------ccchhhHHHHHHHHccCCCCceEEEEeCCcC
Confidence            776652                  33467899999988754     887765443

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=98.86  E-value=9.3e-09  Score=80.43  Aligned_cols=117  Identities=13%  Similarity=0.077  Sum_probs=85.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC--CceEEEecccccccc-----------CCc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH--PRFELIRHDVTEPLL-----------IEV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~-----------~~~   98 (190)
                      +.=++|||||..||++.+++|+++ |.+|.+++|..++.+....++...  ..++++..|..+...           ..+
T Consensus        49 g~WAVVTGaTDGIGKayA~eLAkr-G~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~V  127 (312)
T KOG1014|consen   49 GSWAVVTGATDGIGKAYARELAKR-GFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDV  127 (312)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence            455889999999999999999999 899999999888877666666544  458888899987652           236


Q ss_pred             CEEEEccCCCCCc--cccc----CchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecce
Q 029640           99 DQIYHLACPASPI--FYKY----NPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~--~~~~----~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~  149 (190)
                      -++|||+|.....  ...+    ....++.+|+.++..+.+....    .+. -++++||..
T Consensus       128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~a  189 (312)
T KOG1014|consen  128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFA  189 (312)
T ss_pred             EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccc
Confidence            6899999966521  1111    2235678888888777666532    232 699999843

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=98.85  E-value=5e-09  Score=75.67  Aligned_cols=118  Identities=17%  Similarity=0.133  Sum_probs=84.7

Q ss_pred             ccccCCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-----ccCCcCE
Q 029640           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQ  100 (190)
Q Consensus        27 ~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~d~  100 (190)
                      ++-+.+|..+|.|++|-.|+.+++.+++++. .+|+++.|+....+..      ...+.....|....     ...++|+
T Consensus        13 Df~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at------~k~v~q~~vDf~Kl~~~a~~~qg~dV   86 (238)
T KOG4039|consen   13 DFRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPAT------DKVVAQVEVDFSKLSQLATNEQGPDV   86 (238)
T ss_pred             HHhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccc------cceeeeEEechHHHHHHHhhhcCCce
Confidence            4446789999999999999999999999854 5888888874332221      12344444555432     3468999


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCC
Q 029640          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD  153 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~  153 (190)
                      .|++.|-+..   ....+..++++-.....+.+++++.++ +++++||.++...
T Consensus        87 ~FcaLgTTRg---kaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~s  137 (238)
T KOG4039|consen   87 LFCALGTTRG---KAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPS  137 (238)
T ss_pred             EEEeeccccc---ccccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcc
Confidence            9999985543   223445566667777788999999998 8999999876543

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.83  E-value=1.3e-09  Score=78.57  Aligned_cols=117  Identities=20%  Similarity=0.135  Sum_probs=88.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccC--------CcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI--------EVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--------~~d~v  101 (190)
                      +.|+.|++||+.-.||+.+++.|.+. |..|+++.|++.......++-  ..-+..+.+|+.+.+..        .+|.+
T Consensus         5 laG~~vlvTgagaGIG~~~v~~La~a-GA~ViAvaR~~a~L~sLV~e~--p~~I~Pi~~Dls~wea~~~~l~~v~pidgL   81 (245)
T KOG1207|consen    5 LAGVIVLVTGAGAGIGKEIVLSLAKA-GAQVIAVARNEANLLSLVKET--PSLIIPIVGDLSAWEALFKLLVPVFPIDGL   81 (245)
T ss_pred             ccceEEEeecccccccHHHHHHHHhc-CCEEEEEecCHHHHHHHHhhC--CcceeeeEecccHHHHHHHhhcccCchhhh
Confidence            47899999999999999999999999 899999999766554443321  23488899999986432        38999


Q ss_pred             EEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecce
Q 029640          102 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSE  149 (190)
Q Consensus       102 i~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~  149 (190)
                      +|+||+.-...    .+++.+..|++|+.+..++.+..++    +.  ..++.+||.+
T Consensus        82 VNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqa  139 (245)
T KOG1207|consen   82 VNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQA  139 (245)
T ss_pred             hccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchh
Confidence            99999654322    2345666789999999888877543    22  2699999955

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=98.79  E-value=1.2e-08  Score=78.68  Aligned_cols=91  Identities=16%  Similarity=0.094  Sum_probs=68.5

Q ss_pred             HHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc---------CCcCEEEEccCCCCCcccccCch
Q 029640           48 LVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL---------IEVDQIYHLACPASPIFYKYNPV  118 (190)
Q Consensus        48 l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---------~~~d~vi~~ag~~~~~~~~~~~~  118 (190)
                      +++.|+++ |++|++++|+.....          ...++++|+.+.+.         .++|+||||||...    ....+
T Consensus         1 ~a~~l~~~-G~~Vv~~~r~~~~~~----------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~~~~   65 (241)
T PRK12428          1 TARLLRFL-GARVIGVDRREPGMT----------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TAPVE   65 (241)
T ss_pred             ChHHHHhC-CCEEEEEeCCcchhh----------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CCCHH
Confidence            46788888 899999988654321          13467889987632         25999999998653    23567


Q ss_pred             hHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecCC
Q 029640          119 KTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGD  153 (190)
Q Consensus       119 ~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~~  153 (190)
                      ..+++|+.++..+++.+.+.   +.++|++||...|+.
T Consensus        66 ~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~  103 (241)
T PRK12428         66 LVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEW  103 (241)
T ss_pred             HhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhcc
Confidence            88999999999999988653   249999999988763

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.68  E-value=1.4e-07  Score=77.14  Aligned_cols=117  Identities=20%  Similarity=0.243  Sum_probs=74.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------c--C--CcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------L--I--EVD   99 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~--~--~~d   99 (190)
                      .+.++|+|+||+|.+|+-+++.|+++ |+.|.++.|+.....+.+..........-+..|.....      .  .  ...
T Consensus        77 ~~~~~VlVvGatG~vG~~iv~~llkr-gf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~~  155 (411)
T KOG1203|consen   77 KKPTTVLVVGATGKVGRRIVKILLKR-GFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKGVV  155 (411)
T ss_pred             CCCCeEEEecCCCchhHHHHHHHHHC-CCeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhccccce
Confidence            35689999999999999999999999 79999999976555444330000111111112221111      0  1  133


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEeccee
Q 029640          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEV  150 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~  150 (190)
                      +++-++|...  . +++....+++...++.|++++|+..++ |++++|+.+.
T Consensus       156 ~v~~~~ggrp--~-~ed~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~  204 (411)
T KOG1203|consen  156 IVIKGAGGRP--E-EEDIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGG  204 (411)
T ss_pred             eEEecccCCC--C-cccCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecC
Confidence            4455554211  1 111223457889999999999999998 9999988553

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.68  E-value=1.6e-07  Score=73.08  Aligned_cols=104  Identities=21%  Similarity=0.235  Sum_probs=73.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~  107 (190)
                      ++|+||||||++|+++++.|+++ +++|.+..|+.+......      ..+.+...|+.+..     ..+.|.++++.+.
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~~~~~~~~~------~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~   73 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRNPEAAAALA------GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGL   73 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhC-CCEEEEEEeCHHHHHhhc------CCcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence            57999999999999999999999 999999999766554332      47888889999864     3579999888864


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEeccee
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEV  150 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~  150 (190)
                      .. .    .. ...........+..+.+. .+. +++++|....
T Consensus        74 ~~-~----~~-~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~  110 (275)
T COG0702          74 LD-G----SD-AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGA  110 (275)
T ss_pred             cc-c----cc-chhHHHHHHHHHHHHHhc-CCceEEEEeccCCC
Confidence            43 1    11 223334444444444444 233 6888876443

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=98.61  E-value=6.6e-07  Score=72.02  Aligned_cols=111  Identities=15%  Similarity=0.114  Sum_probs=71.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcC------CCeEEEEcCCCCC--ChhhhhhhhcCCceEEEecccc---c--cccCCcC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENE------KNEVIVVDNYFTG--SKDNLRKWIGHPRFELIRHDVT---E--PLLIEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~------~~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~D~~---~--~~~~~~d   99 (190)
                      .+|+|||++|+||.+++..|+.++      +.++.++++....  ......++.+..  .....|+.   +  +.+.++|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~--~~~~~~~~~~~~~~~~l~~aD   80 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCA--FPLLKSVVATTDPEEAFKDVD   80 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhcc--ccccCCceecCCHHHHhCCCC
Confidence            469999999999999999999853      2489999885432  111111111000  00011211   1  3456899


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-C-C-eEEEEec
Q 029640          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-G-A-RILLTST  147 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~-~~i~vSS  147 (190)
                      +|||+||....  ...+..+.++.|+.-...+.+...++ + . .+|.+|.
T Consensus        81 iVI~tAG~~~~--~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN  129 (325)
T cd01336          81 VAILVGAMPRK--EGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN  129 (325)
T ss_pred             EEEEeCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            99999996543  23456788999999999998888777 2 2 5666665

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00106 malate dehydrogenase

Probab=98.55  E-value=2.5e-06  Score=68.52  Aligned_cols=113  Identities=12%  Similarity=-0.021  Sum_probs=77.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC-CceEEEe-cccc--ccccCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH-PRFELIR-HDVT--EPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~-~D~~--~~~~~~~d~vi~~a  105 (190)
                      ...+|.|+|++|.||..++..|+.++. .++.+++...  ......++.+. ....... .+-.  -+++.++|+||++|
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitA   94 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPA   94 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeC
Confidence            347899999999999999999997643 4788888755  22111122111 1112211 0111  13567899999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEec
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST  147 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS  147 (190)
                      |....  ......+.+..|+..+.++.+.+++++. .+|+++|
T Consensus        95 G~~~~--~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvS  135 (323)
T PLN00106         95 GVPRK--PGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIIS  135 (323)
T ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            96543  2345677899999999999999999886 6777776

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.55  E-value=3.5e-07  Score=74.64  Aligned_cols=94  Identities=26%  Similarity=0.306  Sum_probs=69.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC  106 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag  106 (190)
                      ||+|+|.|+ |+||+.++..|++++..+|++.+|+.+.........  ..++...++|+.|..     ..+.|+|||++.
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~--~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI--GGKVEALQVDAADVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc--cccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence            578999996 999999999999994489999999644332221111  237899999999873     346899999995


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEe
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS  146 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vS  146 (190)
                      ...                  ..+++++|.+.++.++=+|
T Consensus        78 ~~~------------------~~~i~ka~i~~gv~yvDts   99 (389)
T COG1748          78 PFV------------------DLTILKACIKTGVDYVDTS   99 (389)
T ss_pred             chh------------------hHHHHHHHHHhCCCEEEcc
Confidence            322                  2367888888887777555

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.46  E-value=2.2e-07  Score=67.06  Aligned_cols=120  Identities=23%  Similarity=0.292  Sum_probs=88.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~   97 (190)
                      .++...+||||...+|+..++.|.++ |..|.+++-...+..+..+++.  .++.|...|++.+.            +.+
T Consensus         7 ~kglvalvtggasglg~ataerlakq-gasv~lldlp~skg~~vakelg--~~~vf~padvtsekdv~aala~ak~kfgr   83 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAKQ-GASVALLDLPQSKGADVAKELG--GKVVFTPADVTSEKDVRAALAKAKAKFGR   83 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHhc-CceEEEEeCCcccchHHHHHhC--CceEEeccccCcHHHHHHHHHHHHhhccc
Confidence            36788999999999999999999999 8899888876666666666653  47788889998763            346


Q ss_pred             cCEEEEccCCCCCccc----------ccCchhHHHHHHHHHHHHHHHHHHc---------CCe--EEEEecceecC
Q 029640           98 VDQIYHLACPASPIFY----------KYNPVKTIKTNVIGTLNMLGLAKRV---------GAR--ILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----------~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~--~i~vSS~~~~~  152 (190)
                      .|+.+||||.......          .++....+++|+.+++|+++.....         +-|  +|.+.|..+|.
T Consensus        84 ld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafd  159 (260)
T KOG1199|consen   84 LDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFD  159 (260)
T ss_pred             eeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeec
Confidence            9999999996543211          1233456889999999998866421         224  66666655554

>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]

Probab=98.44  E-value=1e-06  Score=67.35  Aligned_cols=120  Identities=14%  Similarity=0.129  Sum_probs=86.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC----eEEEEcCCCCCChhhhhhhh---c--CCceEEEeccccccc-------
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKN----EVIVVDNYFTGSKDNLRKWI---G--HPRFELIRHDVTEPL-------   94 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~----~v~~~~r~~~~~~~~~~~~~---~--~~~~~~~~~D~~~~~-------   94 (190)
                      +.|.++|||++..||..++..|++....    .+++..|+-++.++....+.   +  ...++++..|+++-.       
T Consensus         2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~   81 (341)
T KOG1478|consen    2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK   81 (341)
T ss_pred             CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence            3477999999999999999999997332    46667887777766555543   3  346888999999853       


Q ss_pred             -----cCCcCEEEEccCCCCCcc-------------------------------cccCchhHHHHHHHHHHHHHHHHHHc
Q 029640           95 -----LIEVDQIYHLACPASPIF-------------------------------YKYNPVKTIKTNVIGTLNMLGLAKRV  138 (190)
Q Consensus        95 -----~~~~d~vi~~ag~~~~~~-------------------------------~~~~~~~~~~~n~~~~~~l~~~~~~~  138 (190)
                           +.++|.|+-|||.+....                               +.++..++|+.|+-|.+-+++.....
T Consensus        82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl  161 (341)
T KOG1478|consen   82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL  161 (341)
T ss_pred             HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence                 346999999999765321                               01122357999999998887766443


Q ss_pred             C-----CeEEEEeccee
Q 029640          139 G-----ARILLTSTSEV  150 (190)
Q Consensus       139 ~-----~~~i~vSS~~~  150 (190)
                      -     -++|++||..+
T Consensus       162 l~~~~~~~lvwtSS~~a  178 (341)
T KOG1478|consen  162 LCHSDNPQLVWTSSRMA  178 (341)
T ss_pred             hhcCCCCeEEEEeeccc
Confidence            2     28999999654

>PRK09620 hypothetical protein; Provisional

Probab=98.43  E-value=8.4e-07  Score=67.93  Aligned_cols=75  Identities=20%  Similarity=0.453  Sum_probs=50.0

Q ss_pred             CCCEEEEEccc----------------chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEec--cccc
Q 029640           31 SNMRILVTGGA----------------GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH--DVTE   92 (190)
Q Consensus        31 ~~~~vlItG~~----------------G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~--D~~~   92 (190)
                      .|++|+||+|.                ||+|+++++.|+.+ |++|+++.+..........   ....+..+..  |+.+
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~-Ga~V~li~g~~~~~~~~~~---~~~~~~~V~s~~d~~~   77 (229)
T PRK09620          2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISK-GAHVIYLHGYFAEKPNDIN---NQLELHPFEGIIDLQD   77 (229)
T ss_pred             CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHC-CCeEEEEeCCCcCCCcccC---CceeEEEEecHHHHHH
Confidence            68999999886                99999999999999 8999988753221111110   0112333444  4443


Q ss_pred             c---cc--CCcCEEEEccCCCC
Q 029640           93 P---LL--IEVDQIYHLACPAS  109 (190)
Q Consensus        93 ~---~~--~~~d~vi~~ag~~~  109 (190)
                      .   .+  .++|+|||+|+..+
T Consensus        78 ~l~~~~~~~~~D~VIH~AAvsD   99 (229)
T PRK09620         78 KMKSIITHEKVDAVIMAAAGSD   99 (229)
T ss_pred             HHHHHhcccCCCEEEECccccc
Confidence            2   12  36899999999755

>PRK05086 malate dehydrogenase; Provisional

Probab=98.42  E-value=8.3e-06  Score=65.36  Aligned_cols=112  Identities=18%  Similarity=0.098  Sum_probs=73.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhc-C-CCeEEEEcCCCCCChhhhhhhhcCC-ceEEEeccccc--cccCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMEN-E-KNEVIVVDNYFTGSKDNLRKWIGHP-RFELIRHDVTE--PLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~-~-~~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~D~~~--~~~~~~d~vi~~ag~  107 (190)
                      |+++|+|++|.+|++++..|... + ++++.+++|++. ......++.+.. .......+-.+  ..+.++|+||.++|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence            68999999999999999988653 2 357788887643 211111221111 11221111222  345679999999986


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEec
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS  147 (190)
                      ...  ......+.+..|......+++.+++++. ++|.+.|
T Consensus        80 ~~~--~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvs  118 (312)
T PRK05086         80 ARK--PGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIIT  118 (312)
T ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            432  2345667899999999999999999876 6666665

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.35  E-value=1.2e-05  Score=57.05  Aligned_cols=113  Identities=12%  Similarity=0.113  Sum_probs=75.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhh---hcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      |||.|+|++|.+|++++..|+..+- .++.+++++.........++   ............-..+++.+.|+||..||..
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~   80 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP   80 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence            6899999999999999999999842 57888888644333222222   1112222222222224567899999999864


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ..  ..++..+.++.|..-...+.+...+..-  .++.+|.
T Consensus        81 ~~--~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtN  119 (141)
T PF00056_consen   81 RK--PGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTN  119 (141)
T ss_dssp             SS--TTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SS
T ss_pred             cc--ccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCC
Confidence            32  2345677889999999999998888763  5666653

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.35  E-value=1.2e-06  Score=72.19  Aligned_cols=90  Identities=26%  Similarity=0.246  Sum_probs=60.1

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCCC
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACPA  108 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~~  108 (190)
                      |+|.|+ |++|+.+++.|+++... +|.+.+|+.+........+ ...++.+.++|+.|..     ..++|+||||+|+.
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~   78 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-LGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF   78 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-cccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence            689999 99999999999999545 8999999655544333222 3568999999999864     34799999999754


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEE
Q 029640          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL  144 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~  144 (190)
                      .                  ...++++|.+.++++|=
T Consensus        79 ~------------------~~~v~~~~i~~g~~yvD   96 (386)
T PF03435_consen   79 F------------------GEPVARACIEAGVHYVD   96 (386)
T ss_dssp             G------------------HHHHHHHHHHHT-EEEE
T ss_pred             h------------------hHHHHHHHHHhCCCeec
Confidence            1                  13466666666665554

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.29  E-value=6.7e-07  Score=67.22  Aligned_cols=117  Identities=19%  Similarity=0.122  Sum_probs=68.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh-hhhhhcCCceEEEeccccccc------------cCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWIGHPRFELIRHDVTEPL------------LIE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~------------~~~   97 (190)
                      .++-+++||++..||..++..+... +.+.....+.....+.. +..-. .........|++...            ..+
T Consensus         5 ~r~villTGaSrgiG~~~v~~i~ae-d~e~~r~g~~r~~a~~~~L~v~~-gd~~v~~~g~~~e~~~l~al~e~~r~k~gk   82 (253)
T KOG1204|consen    5 MRKVILLTGASRGIGTGSVATILAE-DDEALRYGVARLLAELEGLKVAY-GDDFVHVVGDITEEQLLGALREAPRKKGGK   82 (253)
T ss_pred             cceEEEEecCCCCccHHHHHHHHhc-chHHHHHhhhcccccccceEEEe-cCCcceechHHHHHHHHHHHHhhhhhcCCc
Confidence            4467999999999999999988887 44433332222221100 00000 011222233443321            235


Q ss_pred             cCEEEEccCCCCCcc--c-----ccCchhHHHHHHHHHHHHHHHH----HHcC--CeEEEEecce
Q 029640           98 VDQIYHLACPASPIF--Y-----KYNPVKTIKTNVIGTLNMLGLA----KRVG--ARILLTSTSE  149 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~--~-----~~~~~~~~~~n~~~~~~l~~~~----~~~~--~~~i~vSS~~  149 (190)
                      .|+||||||...+..  +     .+.+..+|+.|+.++..+...+    ++.+  .-+|++||..
T Consensus        83 r~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~a  147 (253)
T KOG1204|consen   83 RDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLA  147 (253)
T ss_pred             eeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchh
Confidence            999999999666521  1     1235568999999887776544    3443  2588999854

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=98.20  E-value=5.5e-06  Score=63.52  Aligned_cols=64  Identities=19%  Similarity=0.376  Sum_probs=43.2

Q ss_pred             cccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccc-------cccCCcCEEEEccCCCC
Q 029640           39 GGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-------PLLIEVDQIYHLACPAS  109 (190)
Q Consensus        39 G~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-------~~~~~~d~vi~~ag~~~  109 (190)
                      .++|++|+++++.|+++ |++|+++.|.......      ....+.++.++..+       ....++|+|||+||...
T Consensus        23 ~SSG~iG~aLA~~L~~~-G~~V~li~r~~~~~~~------~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAvsd   93 (229)
T PRK06732         23 HSTGQLGKIIAETFLAA-GHEVTLVTTKTAVKPE------PHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMAVSD   93 (229)
T ss_pred             ccchHHHHHHHHHHHhC-CCEEEEEECcccccCC------CCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCccCC
Confidence            56899999999999999 8999998775322110      01245555443322       12346899999999765

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=98.18  E-value=3.3e-05  Score=53.22  Aligned_cols=95  Identities=18%  Similarity=0.261  Sum_probs=55.4

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEE-EcCCCCCChhhhhhhhc--CCceEEEeccccccccCCcCEEEEccCCCCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLLIEVDQIYHLACPASP  110 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~-~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~  110 (190)
                      ||.|.|++|++|+.+++.|.++...++.. +.++. .....+....+  .......-.+.....+.++|+||.|.+..  
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~--   77 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR-SAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG--   77 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT-TTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH--
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc-ccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh--
Confidence            68999999999999999999986655444 44443 12222222211  11112222223334457899999997411  


Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEec
Q 029640          111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus       111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS  147 (190)
                                      ....+...+.+.++++|=.|+
T Consensus        78 ----------------~~~~~~~~~~~~g~~ViD~s~   98 (121)
T PF01118_consen   78 ----------------ASKELAPKLLKAGIKVIDLSG   98 (121)
T ss_dssp             ----------------HHHHHHHHHHHTTSEEEESSS
T ss_pred             ----------------HHHHHHHHHhhCCcEEEeCCH
Confidence                            124566666777776665554

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>cd00704 MDH Malate dehydrogenase

Probab=98.17  E-value=1.9e-05  Score=63.52  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=71.7

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCC------eEEEEcCCC--CCChhhhhhhhcC-----CceEEEeccccccccCCcCE
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYF--TGSKDNLRKWIGH-----PRFELIRHDVTEPLLIEVDQ  100 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~------~v~~~~r~~--~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~d~  100 (190)
                      +|.|+|++|.+|..++..|+..+-.      ++.+++++.  +...-...++.+.     ..+. +. +-..+.+.++|+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~-i~-~~~~~~~~~aDi   79 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVV-IT-TDPEEAFKDVDV   79 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcE-Ee-cChHHHhCCCCE
Confidence            6999999999999999999986322      488888765  2222111111110     0111 11 112245568999


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CC--eEEEEec
Q 029640          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA--RILLTST  147 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~--~~i~vSS  147 (190)
                      |||.||....  ..+...+.+..|..-...+....+++ +.  .+|.+|.
T Consensus        80 VVitAG~~~~--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN  127 (323)
T cd00704          80 AILVGAFPRK--PGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN  127 (323)
T ss_pred             EEEeCCCCCC--cCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            9999996432  33456778999999999999888877 33  5666664

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=98.17  E-value=2.6e-05  Score=64.12  Aligned_cols=104  Identities=17%  Similarity=0.195  Sum_probs=63.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEE-eccccccccCCcCEEEEccCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELI-RHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~-~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +.++|.|.||||++|+.+++.|.++...++..+.+...... .+...... ...+.. ..++....+.++|+||.+.+..
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~-~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~  115 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQ-SFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG  115 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCC-CchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence            55799999999999999999999997778888776433221 11111000 000111 0122222246799999987521


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCC
Q 029640          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDP  154 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~  154 (190)
                                        ....++..+ +.++++|-.|+.+-+.+.
T Consensus       116 ------------------~s~~i~~~~-~~g~~VIDlSs~fRl~~~  142 (381)
T PLN02968        116 ------------------TTQEIIKAL-PKDLKIVDLSADFRLRDI  142 (381)
T ss_pred             ------------------HHHHHHHHH-hCCCEEEEcCchhccCCc
Confidence                              234555555 356799999997765543

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.15  E-value=1.7e-05  Score=66.63  Aligned_cols=76  Identities=22%  Similarity=0.236  Sum_probs=56.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +++++++|+|+++ +|..+++.|++. |++|+++++.....- .....+ ...++.++..|..+....++|+||+++|..
T Consensus         3 ~~~k~v~iiG~g~-~G~~~A~~l~~~-G~~V~~~d~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~   79 (450)
T PRK14106          3 LKGKKVLVVGAGV-SGLALAKFLKKL-GAKVILTDEKEEDQLKEALEEL-GELGIELVLGEYPEEFLEGVDLVVVSPGVP   79 (450)
T ss_pred             cCCCEEEEECCCH-HHHHHHHHHHHC-CCEEEEEeCCchHHHHHHHHHH-HhcCCEEEeCCcchhHhhcCCEEEECCCCC
Confidence            3679999999777 999999999999 899999988642221 112222 233567888888876666799999999853

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.12  E-value=8e-06  Score=60.94  Aligned_cols=76  Identities=12%  Similarity=0.156  Sum_probs=51.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-----ccCCcCEEEEc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQIYHL  104 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~d~vi~~  104 (190)
                      +++++++|+||+|.+|+.+++.|++. +++|+++.|+.+........+...........|..+.     ...++|+||++
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~a  104 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAA  104 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence            46799999999999999999999998 7899999886544333222221111233344455443     34579999997


Q ss_pred             cC
Q 029640          105 AC  106 (190)
Q Consensus       105 ag  106 (190)
                      ..
T Consensus       105 t~  106 (194)
T cd01078         105 GA  106 (194)
T ss_pred             CC
Confidence            64

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=98.04  E-value=1.8e-05  Score=65.39  Aligned_cols=69  Identities=23%  Similarity=0.261  Sum_probs=51.2

Q ss_pred             cCCCEEEEEcc----------------cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc
Q 029640           30 QSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP   93 (190)
Q Consensus        30 ~~~~~vlItG~----------------~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~   93 (190)
                      +.+++++||||                +|.+|.++++.|..+ |++|+++.+......        ...+  ..+|+.+.
T Consensus       186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~-Ga~V~~v~~~~~~~~--------~~~~--~~~dv~~~  254 (399)
T PRK05579        186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARR-GADVTLVSGPVNLPT--------PAGV--KRIDVESA  254 (399)
T ss_pred             cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHC-CCEEEEeCCCccccC--------CCCc--EEEccCCH
Confidence            58899999999                899999999999999 899999887542110        1122  23566653


Q ss_pred             ---------ccCCcCEEEEccCCCC
Q 029640           94 ---------LLIEVDQIYHLACPAS  109 (190)
Q Consensus        94 ---------~~~~~d~vi~~ag~~~  109 (190)
                               .+.++|++||+||+..
T Consensus       255 ~~~~~~v~~~~~~~DilI~~Aav~d  279 (399)
T PRK05579        255 QEMLDAVLAALPQADIFIMAAAVAD  279 (399)
T ss_pred             HHHHHHHHHhcCCCCEEEEcccccc
Confidence                     2346999999999755

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=98.02  E-value=0.00015  Score=58.11  Aligned_cols=112  Identities=14%  Similarity=0.082  Sum_probs=73.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCC--CCChhhhhhhhc----C-CceEEEe-ccccccccCCcCEEEE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYF--TGSKDNLRKWIG----H-PRFELIR-HDVTEPLLIEVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~--~~~~~~~~~~~~----~-~~~~~~~-~D~~~~~~~~~d~vi~  103 (190)
                      |+|.|+|++|.+|..++..|+..+. .+|.+++|..  +.......++.+    . ....... .|  ...+.+.|+||-
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d--~~~l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD--LSDVAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC--HHHhCCCCEEEE
Confidence            6899999999999999999999832 2588888843  222222111111    1 1122211 23  234678999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--CeEEEEecc
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTS  148 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~i~vSS~  148 (190)
                      ++|....  ...+..+.+..|......+++...+..  .++|.+++.
T Consensus        79 tag~p~~--~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np  123 (309)
T cd05294          79 TAGVPRK--EGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP  123 (309)
T ss_pred             ecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            9985432  223446778889999999988887764  377777773

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=98.02  E-value=2.7e-05  Score=63.63  Aligned_cols=76  Identities=16%  Similarity=0.112  Sum_probs=52.8

Q ss_pred             CCCEEEEEcccchHHHH--HHHHHHhcCCCeEEEEcCCCCCCh-----------hhhhhhhc--CCceEEEeccccccc-
Q 029640           31 SNMRILVTGGAGFIGSH--LVDKLMENEKNEVIVVDNYFTGSK-----------DNLRKWIG--HPRFELIRHDVTEPL-   94 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~--l~~~L~~~~~~~v~~~~r~~~~~~-----------~~~~~~~~--~~~~~~~~~D~~~~~-   94 (190)
                      .+|+++|||+++.+|.+  +++.| .. |..++++.+..+...           ..+.....  ...+..+.+|+.+.+ 
T Consensus        40 ggK~aLVTGaSsGIGlA~~IA~al-~~-GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~  117 (398)
T PRK13656         40 GPKKVLVIGASSGYGLASRIAAAF-GA-GADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI  117 (398)
T ss_pred             CCCEEEEECCCchHhHHHHHHHHH-Hc-CCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence            46899999999999999  89999 77 787777764321111           11222211  224677899999863 


Q ss_pred             -----------cCCcCEEEEccCCC
Q 029640           95 -----------LIEVDQIYHLACPA  108 (190)
Q Consensus        95 -----------~~~~d~vi~~ag~~  108 (190)
                                 +.++|+|||++|..
T Consensus       118 v~~lie~I~e~~G~IDiLVnSaA~~  142 (398)
T PRK13656        118 KQKVIELIKQDLGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCccC
Confidence                       23599999999865

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.99  E-value=9.8e-06  Score=65.38  Aligned_cols=74  Identities=22%  Similarity=0.245  Sum_probs=49.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +.+++|+||||+|+||+.+++.|+.+.+ ..++++.|+.........++ ....  .  .|+ +..+.++|+|||+++..
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el-~~~~--i--~~l-~~~l~~aDiVv~~ts~~  226 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAEL-GGGK--I--LSL-EEALPEADIVVWVASMP  226 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHh-cccc--H--HhH-HHHHccCCEEEECCcCC
Confidence            5789999999999999999999986523 68888888644332221111 1111  1  121 23456799999999864


Q ss_pred             C
Q 029640          109 S  109 (190)
Q Consensus       109 ~  109 (190)
                      .
T Consensus       227 ~  227 (340)
T PRK14982        227 K  227 (340)
T ss_pred             c
Confidence            4

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.99  E-value=2.1e-05  Score=55.32  Aligned_cols=78  Identities=21%  Similarity=0.217  Sum_probs=55.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      +++++++|.| +|..|+.++..|...+-.+|+++.|+.+........+ ....+.....+-......++|+||++.+...
T Consensus        10 l~~~~vlviG-aGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~-~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~   87 (135)
T PF01488_consen   10 LKGKRVLVIG-AGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF-GGVNIEAIPLEDLEEALQEADIVINATPSGM   87 (135)
T ss_dssp             GTTSEEEEES-SSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH-TGCSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred             cCCCEEEEEC-CHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc-CccccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence            4789999999 5889999999999994456999999655444333333 3345666665544445678999999986543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=97.98  E-value=0.00014  Score=58.64  Aligned_cols=112  Identities=13%  Similarity=0.092  Sum_probs=70.3

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCC------eEEEEcCCCCC--ChhhhhhhhcCC--c-eEEEeccccccccCCcCEEE
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYFTG--SKDNLRKWIGHP--R-FELIRHDVTEPLLIEVDQIY  102 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~------~v~~~~r~~~~--~~~~~~~~~~~~--~-~~~~~~D~~~~~~~~~d~vi  102 (190)
                      +|.|+|++|.+|..++..|+..+-.      ++.++++....  ......++.+..  . ......+-..+++.++|+||
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999999999999999986322      58888875432  111111111110  0 00111111124556799999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C--eEEEEec
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTST  147 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--~~i~vSS  147 (190)
                      +.||....  ..++..+.+..|+.-...+.+...++. .  .+|.+|.
T Consensus        81 itAG~~~~--~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN  126 (324)
T TIGR01758        81 LVGAFPRK--EGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN  126 (324)
T ss_pred             EcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence            99986432  223467788999999999999888873 3  5666665

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.94  E-value=0.00016  Score=57.90  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=75.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhc-----CCceEEEeccccccccCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      ++|.|.| +|.+|+.++..|+..+. +++.+++++.+.......++.+     .........|.  ....++|+||+++|
T Consensus         1 ~kI~IIG-aG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~--~~l~~aDIVIitag   77 (306)
T cd05291           1 RKVVIIG-AGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY--SDCKDADIVVITAG   77 (306)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH--HHhCCCCEEEEccC
Confidence            4799999 59999999999999832 5899999976655433333311     11222222222  34578999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ....  ..++..+.++.|..-...+.+.+++++-  .+|.+|.
T Consensus        78 ~~~~--~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN  118 (306)
T cd05291          78 APQK--PGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN  118 (306)
T ss_pred             CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            5432  2345667889999999999988887753  6666665

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.94  E-value=5.9e-05  Score=61.07  Aligned_cols=70  Identities=21%  Similarity=0.250  Sum_probs=45.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCC---eEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKN---EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      +++|+|.|++|++|+.+++.|.++ ++   ++..+.+....... +. + .  .......|+.+....++|+||.++|.
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~-~hp~~~l~~l~s~~~~g~~-l~-~-~--g~~i~v~d~~~~~~~~vDvVf~A~g~   73 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEER-NFPVDKLRLLASARSAGKE-LS-F-K--GKELKVEDLTTFDFSGVDIALFSAGG   73 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC-CCCcceEEEEEccccCCCe-ee-e-C--CceeEEeeCCHHHHcCCCEEEECCCh
Confidence            478999999999999999999996 44   44555554322211 11 1 1  12333345554445689999999863

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=97.93  E-value=5.8e-05  Score=58.76  Aligned_cols=89  Identities=17%  Similarity=0.197  Sum_probs=56.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-------cCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-------~~~~d~vi~~a  105 (190)
                      |+|+|+||||. |+.+++.|.+. |++|++..+........ .    ......+..+..+..       ..++|+||+++
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~-g~~v~~s~~t~~~~~~~-~----~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAt   73 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQ-GIEILVTVTTSEGKHLY-P----IHQALTVHTGALDPQELREFLKRHSIDILVDAT   73 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhC-CCeEEEEEccCCccccc-c----ccCCceEEECCCCHHHHHHHHHhcCCCEEEEcC
Confidence            57999999999 99999999998 79999988866543221 1    111122233333321       23699999998


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEE
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL  143 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i  143 (190)
                      .+..               ...+.++.++|++.++.++
T Consensus        74 HPfA---------------~~is~~a~~a~~~~~ipyl   96 (256)
T TIGR00715        74 HPFA---------------AQITTNATAVCKELGIPYV   96 (256)
T ss_pred             CHHH---------------HHHHHHHHHHHHHhCCcEE
Confidence            5322               1224566667766665333

This enzyme was found to be a monomer by gel filtration.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.91  E-value=0.00034  Score=56.18  Aligned_cols=112  Identities=13%  Similarity=0.162  Sum_probs=77.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC----CceEEEeccccccccCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      .+++|.|+|+ |.+|..++..|+..+- .++.+++++.+.......++.+.    ..+.....|.  +++.+.|+||..|
T Consensus         5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~--~~~~~adivIita   81 (315)
T PRK00066          5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY--SDCKDADLVVITA   81 (315)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH--HHhCCCCEEEEec
Confidence            3579999996 9999999999998843 37999988766554444333221    1333332222  3567899999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      |....  ..++..+.++.|..-...+++.+++++.  .+|.+|-
T Consensus        82 g~~~k--~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN  123 (315)
T PRK00066         82 GAPQK--PGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN  123 (315)
T ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            86432  2345667889999999998888877653  6666664

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.89  E-value=0.00013  Score=59.48  Aligned_cols=99  Identities=12%  Similarity=0.196  Sum_probs=57.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC----------CceEEEeccccccccCCcCE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----------PRFELIRHDVTEPLLIEVDQ  100 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~d~  100 (190)
                      ++++|.|+||+|++|+.+++.|..+...++..+.++.......+....+.          ..+.+...|.  +...++|+
T Consensus         2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~Dv   79 (349)
T PRK08664          2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP--EAVDDVDI   79 (349)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH--HHhcCCCE
Confidence            45899999999999999999999885557777734322222111111000          0111111121  22347899


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      ||.+....                  ....+++.+.+.++++|-.|+..
T Consensus        80 Vf~a~p~~------------------~s~~~~~~~~~~G~~vIDls~~f  110 (349)
T PRK08664         80 VFSALPSD------------------VAGEVEEEFAKAGKPVFSNASAH  110 (349)
T ss_pred             EEEeCChh------------------HHHHHHHHHHHCCCEEEECCchh
Confidence            98876321                  02345566667788777777644

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.83  E-value=0.00014  Score=59.07  Aligned_cols=99  Identities=14%  Similarity=0.224  Sum_probs=59.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CC---ceEEEeccccccccCCcCEEEEccCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HP---RFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~---~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      +++|+|.|++|++|+.+++.|.++.+.++..+.++.... ..+....+ ..   ...+...|  +....++|+||.|...
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g-~~l~~~~~~~~~~~~~~~~~~~--~~~~~~vD~Vf~alP~   78 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAG-KPLSDVHPHLRGLVDLVLEPLD--PEILAGADVVFLALPH   78 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccC-cchHHhCcccccccCceeecCC--HHHhcCCCEEEECCCc
Confidence            479999999999999999999988667776655532221 11111111 00   11122122  1234569999988742


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceec
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~  151 (190)
                      .                  ....++..+.+.++++|=.|+..-+
T Consensus        79 ~------------------~~~~~v~~a~~aG~~VID~S~~fR~  104 (343)
T PRK00436         79 G------------------VSMDLAPQLLEAGVKVIDLSADFRL  104 (343)
T ss_pred             H------------------HHHHHHHHHHhCCCEEEECCcccCC
Confidence            1                  1234555666677788877775544

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=97.82  E-value=2.9e-05  Score=62.14  Aligned_cols=76  Identities=16%  Similarity=0.198  Sum_probs=58.2

Q ss_pred             EEEEEcccchHHHHHHHHHHhc---CCCeEEEEcCCCCCChhhhhhhhcC-----CceEEEecccccccc-----CCcCE
Q 029640           34 RILVTGGAGFIGSHLVDKLMEN---EKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIRHDVTEPLL-----IEVDQ  100 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~---~~~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~-----~~~d~  100 (190)
                      .++|.||+||.|..+++.+++.   .+...-+..|+.++..+.+.....+     ....++.+|..|++.     .++.+
T Consensus         7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~v   86 (423)
T KOG2733|consen    7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQARV   86 (423)
T ss_pred             eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhhEE
Confidence            4899999999999999999993   2667888889887777666655332     233378899988754     46999


Q ss_pred             EEEccCCCC
Q 029640          101 IYHLACPAS  109 (190)
Q Consensus       101 vi~~ag~~~  109 (190)
                      |+||+|+..
T Consensus        87 ivN~vGPyR   95 (423)
T KOG2733|consen   87 IVNCVGPYR   95 (423)
T ss_pred             EEeccccce
Confidence            999998654

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.79  E-value=0.00015  Score=59.02  Aligned_cols=99  Identities=13%  Similarity=0.212  Sum_probs=58.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhhcC--C--ceEEEeccccccccCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIGH--P--RFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~~--~--~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      ++|.|.|+||++|+.+++.|.++...++..+ .++... ...+....+.  .  ...+...|..+ ...++|+||.|.+.
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sa-gk~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~DvVf~alP~   78 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESA-GKPVSEVHPHLRGLVDLNLEPIDEEE-IAEDADVVFLALPH   78 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhc-CCChHHhCccccccCCceeecCCHHH-hhcCCCEEEECCCc
Confidence            5799999999999999999998866777733 433211 1111111110  0  11222222211 12379999998842


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceec
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~  151 (190)
                      .                  ....++..+.+.++++|=.|+..=+
T Consensus        79 ~------------------~s~~~~~~~~~~G~~VIDlS~~fR~  104 (346)
T TIGR01850        79 G------------------VSAELAPELLAAGVKVIDLSADFRL  104 (346)
T ss_pred             h------------------HHHHHHHHHHhCCCEEEeCChhhhc
Confidence            1                  1345666666678889988886533

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.78  E-value=0.00066  Score=54.38  Aligned_cols=112  Identities=16%  Similarity=0.032  Sum_probs=74.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC-CceEEEecccc---ccccCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVT---EPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~---~~~~~~~d~vi~~ag~  107 (190)
                      |+|.|+|++|.+|..++..|+.++- .++.+++.+  ...-...++.+. .........-.   -+++.+.|+||-+||.
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~   78 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV   78 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence            5899999999999999999988733 478888775  222222222222 11122211111   2456789999999986


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEecc
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTS  148 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS~  148 (190)
                      ..  ...+...+.++.|..-...+.+..++++-  .+|.+|..
T Consensus        79 ~~--k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          79 PR--KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             CC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            43  22345677899999999999988887763  67777653

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=97.76  E-value=6.6e-05  Score=57.48  Aligned_cols=83  Identities=14%  Similarity=0.164  Sum_probs=48.9

Q ss_pred             EE-cccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc------------ccCCcCEEEE
Q 029640           37 VT-GGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP------------LLIEVDQIYH  103 (190)
Q Consensus        37 It-G~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~------------~~~~~d~vi~  103 (190)
                      || .++|+||+++++.|+++ |++|.++.+.....     .   .   ....+|+.+.            .+.++|++||
T Consensus        19 itN~SSGgIG~AIA~~la~~-Ga~Vvlv~~~~~l~-----~---~---~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVn   86 (227)
T TIGR02114        19 ITNHSTGHLGKIITETFLSA-GHEVTLVTTKRALK-----P---E---PHPNLSIREIETTKDLLITLKELVQEHDILIH   86 (227)
T ss_pred             ecCCcccHHHHHHHHHHHHC-CCEEEEEcChhhcc-----c---c---cCCcceeecHHHHHHHHHHHHHHcCCCCEEEE
Confidence            44 45899999999999999 89998887531110     0   0   0123455542            1235999999


Q ss_pred             ccCCCCCcc-cccCchhHHHHHHHHHHHH
Q 029640          104 LACPASPIF-YKYNPVKTIKTNVIGTLNM  131 (190)
Q Consensus       104 ~ag~~~~~~-~~~~~~~~~~~n~~~~~~l  131 (190)
                      |||...... ...+.+++.+++..++..+
T Consensus        87 nAgv~d~~~~~~~s~e~~~~~~~~~~~~~  115 (227)
T TIGR02114        87 SMAVSDYTPVYMTDLEQVQASDNLNEFLS  115 (227)
T ss_pred             CCEeccccchhhCCHHHHhhhcchhhhhc
Confidence            999654321 2223344444444444333

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.71  E-value=0.00088  Score=53.99  Aligned_cols=111  Identities=14%  Similarity=0.090  Sum_probs=73.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-C-----eEEEEcCCCCC--ChhhhhhhhcC-----CceEEEeccccccccCCcC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-N-----EVIVVDNYFTG--SKDNLRKWIGH-----PRFELIRHDVTEPLLIEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~-----~v~~~~r~~~~--~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~d   99 (190)
                      ++|.|+|++|.+|..++..|+..+- .     ++.+++.....  ......++.+.     ..+.....  ...++.+.|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~--~~~~~~daD   80 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDD--PNVAFKDAD   80 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecC--cHHHhCCCC
Confidence            6899999999999999999998733 3     68888774332  22222222111     12222211  124567899


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--C-eEEEEec
Q 029640          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTST  147 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~-~~i~vSS  147 (190)
                      +||.+||....  ..++..+.+..|..-...+.....++.  - .+|.+|.
T Consensus        81 ivvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN  129 (322)
T cd01338          81 WALLVGAKPRG--PGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGN  129 (322)
T ss_pred             EEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecC
Confidence            99999986432  234566789999999999998887765  2 6777765

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.71  E-value=0.00069  Score=54.03  Aligned_cols=112  Identities=15%  Similarity=0.084  Sum_probs=74.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcCC----ceEEEeccccccccCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHP----RFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      ++|.|+|+ |.||+.++..|+.+.-. ++.+++...+...-...++.+..    .-..+..|-...++.+.|+|+-.||.
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~   79 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGV   79 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCC
Confidence            57999998 99999999999887434 88898887444433322222111    11122222223456789999999985


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ..  ...+...+.+..|..-...+.+...+..-  .++.++-
T Consensus        80 pr--KpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtN  119 (313)
T COG0039          80 PR--KPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTN  119 (313)
T ss_pred             CC--CCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecC
Confidence            43  23356677889999999999888877764  5555554

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.66  E-value=0.00023  Score=57.58  Aligned_cols=97  Identities=16%  Similarity=0.217  Sum_probs=56.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcC--CCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~--~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      .+++|.|+|+||++|..+++.|.+++  ..++..+... ......+. +. ...+.+...|  ...+.++|+||.+.+..
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~aG~~l~-~~-~~~l~~~~~~--~~~~~~vD~vFla~p~~   77 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESAGHSVP-FA-GKNLRVREVD--SFDFSQVQLAFFAAGAA   77 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccCCCeec-cC-CcceEEeeCC--hHHhcCCCEEEEcCCHH
Confidence            34789999999999999999999752  2233344332 11111111 11 1122332222  22346799999987421


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEeccee
Q 029640          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV  150 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~  150 (190)
                      .                  ...++..+.+.++++|=.|+..=
T Consensus        78 ~------------------s~~~v~~~~~~G~~VIDlS~~fR  101 (336)
T PRK05671         78 V------------------SRSFAEKARAAGCSVIDLSGALP  101 (336)
T ss_pred             H------------------HHHHHHHHHHCCCeEEECchhhc
Confidence            0                  23366677777888887777654

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.65  E-value=0.0006  Score=55.32  Aligned_cols=105  Identities=22%  Similarity=0.283  Sum_probs=68.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh------------------------hhhhhhhcCCceEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK------------------------DNLRKWIGHPRFEL   85 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~------------------------~~~~~~~~~~~~~~   85 (190)
                      +.+++|+|.| .|.+|..+++.|+..|-.++.+++++.-...                        ..+..+-+..++..
T Consensus        22 L~~~~VlIiG-~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~  100 (338)
T PRK12475         22 IREKHVLIVG-AGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP  100 (338)
T ss_pred             hcCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence            4678999999 6889999999999994358888887641110                        11222223345666


Q ss_pred             Eecccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           86 IRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        86 ~~~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      +..|+...    ...++|+||.+..         +.+.        -..+-+.|.+.++.+|+.+..+.+|
T Consensus       101 ~~~~~~~~~~~~~~~~~DlVid~~D---------~~~~--------r~~in~~~~~~~ip~i~~~~~g~~G  154 (338)
T PRK12475        101 VVTDVTVEELEELVKEVDLIIDATD---------NFDT--------RLLINDLSQKYNIPWIYGGCVGSYG  154 (338)
T ss_pred             EeccCCHHHHHHHhcCCCEEEEcCC---------CHHH--------HHHHHHHHHHcCCCEEEEEecccEE
Confidence            66666532    2356899988862         1111        1235577888888999888766555

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.63  E-value=0.00064  Score=57.09  Aligned_cols=76  Identities=18%  Similarity=0.115  Sum_probs=49.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccC-CcCEEEEccCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-EVDQIYHLACPAS  109 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-~~d~vi~~ag~~~  109 (190)
                      .+++++|+|++| +|...++.|++. |+.|.+.++...........+. ..++.+........... ++|.||+++|+..
T Consensus         4 ~~k~v~v~G~g~-~G~s~a~~l~~~-G~~V~~~d~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~   80 (447)
T PRK02472          4 QNKKVLVLGLAK-SGYAAAKLLHKL-GANVTVNDGKPFSENPEAQELL-EEGIKVICGSHPLELLDEDFDLMVKNPGIPY   80 (447)
T ss_pred             CCCEEEEEeeCH-HHHHHHHHHHHC-CCEEEEEcCCCccchhHHHHHH-hcCCEEEeCCCCHHHhcCcCCEEEECCCCCC
Confidence            578999999877 999999999999 8999999876533322222222 22344443222111122 3899999998653

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.62  E-value=0.00042  Score=47.98  Aligned_cols=95  Identities=21%  Similarity=0.325  Sum_probs=54.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEE-EcCCC-CCChhhhhhhhcC--CceEEEeccccccccCCcCEEEEccCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNYF-TGSKDNLRKWIGH--PRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~-~~r~~-~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      ++|.|.|.+|-+|+.+++.+.++.+.++.. +.|+. +.....+..+.+.  ..+... -|+ +..+..+|++|.+..  
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~-~~l-~~~~~~~DVvIDfT~--   76 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT-DDL-EELLEEADVVIDFTN--   76 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB-S-H-HHHTTH-SEEEEES---
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc-hhH-HHhcccCCEEEEcCC--
Confidence            579999999999999999999975766544 45543 1222222222211  112221 222 233445999999862  


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEec
Q 029640          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS  147 (190)
                                      -..+...++.|.++++.+|.-.|
T Consensus        77 ----------------p~~~~~~~~~~~~~g~~~ViGTT   99 (124)
T PF01113_consen   77 ----------------PDAVYDNLEYALKHGVPLVIGTT   99 (124)
T ss_dssp             ----------------HHHHHHHHHHHHHHT-EEEEE-S
T ss_pred             ----------------hHHhHHHHHHHHhCCCCEEEECC
Confidence                            12245678888888877764443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.61  E-value=0.00055  Score=55.63  Aligned_cols=97  Identities=15%  Similarity=0.155  Sum_probs=56.8

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC---eEEEE-cCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKN---EVIVV-DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~---~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      ..++|.|.|++|++|..+++.|.++ ++   ++..+ +++.....-..     . .......++....+.++|+||.+++
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~-~hP~~~l~~las~rsaGk~~~~-----~-~~~~~v~~~~~~~~~~~D~vf~a~p   78 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDR-DFPYSSLKMLASARSAGKKVTF-----E-GRDYTVEELTEDSFDGVDIALFSAG   78 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhC-CCCcceEEEEEccCCCCCeeee-----c-CceeEEEeCCHHHHcCCCEEEECCC
Confidence            4478999999999999999999986 33   33333 22222211111     1 1122222333344567999999885


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ...                  ...+...+.+.++++|=.|+..=+.
T Consensus        79 ~~~------------------s~~~~~~~~~~g~~VIDlS~~fR~~  106 (344)
T PLN02383         79 GSI------------------SKKFGPIAVDKGAVVVDNSSAFRME  106 (344)
T ss_pred             cHH------------------HHHHHHHHHhCCCEEEECCchhhcC
Confidence            321                  2334445555677888777755433

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.56  E-value=0.00027  Score=56.13  Aligned_cols=76  Identities=11%  Similarity=0.093  Sum_probs=50.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCC---CCChhhhhhhhc-CCceEEEeccccccc-----cCCcCE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYF---TGSKDNLRKWIG-HPRFELIRHDVTEPL-----LIEVDQ  100 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~---~~~~~~~~~~~~-~~~~~~~~~D~~~~~-----~~~~d~  100 (190)
                      ++++++|+|+ |.+|++++..|++. |. +|.++.|+.   +...+....+.. ...+....+|+.+..     ....|+
T Consensus       125 ~~k~vlI~GA-GGagrAia~~La~~-G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di  202 (289)
T PRK12548        125 KGKKLTVIGA-GGAATAIQVQCALD-GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI  202 (289)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHC-CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence            5789999997 89999999999999 55 599999875   222222222211 123344556766532     245799


Q ss_pred             EEEccCCC
Q 029640          101 IYHLACPA  108 (190)
Q Consensus       101 vi~~ag~~  108 (190)
                      |||+-...
T Consensus       203 lINaTp~G  210 (289)
T PRK12548        203 LVNATLVG  210 (289)
T ss_pred             EEEeCCCC
Confidence            99987543

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.54  E-value=0.002  Score=53.98  Aligned_cols=111  Identities=9%  Similarity=0.057  Sum_probs=78.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhc-------CC-CeEEEEcCCCCCChhhhhhhhcCC-----ceEEEeccccccccCCcC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMEN-------EK-NEVIVVDNYFTGSKDNLRKWIGHP-----RFELIRHDVTEPLLIEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~-------~~-~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~d   99 (190)
                      -+|.|+|++|.+|.+++..|+..       +- .++.+++++.+...-...++.+..     .+.+...  ..+++.+.|
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~--~ye~~kdaD  178 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGID--PYEVFQDAE  178 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecC--CHHHhCcCC
Confidence            68999999999999999999887       32 368888887766654444443221     2221111  124567899


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHH-cC--CeEEEEec
Q 029640          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR-VG--ARILLTST  147 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~--~~~i~vSS  147 (190)
                      +||-.||...  ...++..+.++.|..-...+.+...+ .+  .++|.+|.
T Consensus       179 iVVitAG~pr--kpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN  227 (444)
T PLN00112        179 WALLIGAKPR--GPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN  227 (444)
T ss_pred             EEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence            9999998643  22345677899999999999999888 44  36777775

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=97.54  E-value=0.00069  Score=55.06  Aligned_cols=101  Identities=14%  Similarity=0.141  Sum_probs=56.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-------CceE-EEeccccccccCCcCEEEEc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-------PRFE-LIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-------~~~~-~~~~D~~~~~~~~~d~vi~~  104 (190)
                      ++|.|+|++|++|+++++.|..+...++..+..+.......+....+.       ..+. ...-++......++|+||.+
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a   80 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA   80 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence            479999999999999999998874457666633221111111111100       0011 01112222233578999988


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceec
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~  151 (190)
                      .....                  ...+...+.+.++++|..|+..=+
T Consensus        81 ~p~~~------------------s~~~~~~~~~~G~~VIDlsg~fR~  109 (341)
T TIGR00978        81 LPSEV------------------AEEVEPKLAEAGKPVFSNASNHRM  109 (341)
T ss_pred             CCHHH------------------HHHHHHHHHHCCCEEEECChhhcc
Confidence            74211                  123445666678888888876533

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.51  E-value=0.00056  Score=54.89  Aligned_cols=99  Identities=13%  Similarity=0.172  Sum_probs=59.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC----CceEEEeccccccccCCcCEEEEccCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      +++|.|.|++|+.|..|++.|..+...++.....+.. ....+.....+    ....+...|.......++|+||.+.-.
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~-~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh   80 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRER-AGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH   80 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhh-cCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence            5789999999999999999999996666555544331 11122222111    112233333333344569999988632


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      ..                  ...++......++++|=.|..+
T Consensus        81 g~------------------s~~~v~~l~~~g~~VIDLSadf  104 (349)
T COG0002          81 GV------------------SAELVPELLEAGCKVIDLSADF  104 (349)
T ss_pred             hh------------------HHHHHHHHHhCCCeEEECCccc
Confidence            11                  2345555555677888888755

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.50  E-value=0.0027  Score=51.17  Aligned_cols=111  Identities=16%  Similarity=0.103  Sum_probs=72.7

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-C-----eEEEEcCCCCC--ChhhhhhhhcCC-----ceEEEeccccccccCCcC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-N-----EVIVVDNYFTG--SKDNLRKWIGHP-----RFELIRHDVTEPLLIEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~-----~v~~~~r~~~~--~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~d   99 (190)
                      .+|.|+|++|.+|..++..|+..+- .     ++.+++.....  ..-...++.+..     .+... .+ ...++.++|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~-~~~~~~daD   81 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-TD-PEEAFKDVD   81 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-cC-hHHHhCCCC
Confidence            5799999999999999999998732 3     68888775422  232222222111     12111 11 124566899


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--C-eEEEEec
Q 029640          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTST  147 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~-~~i~vSS  147 (190)
                      +||..||...  ...++..+.+..|..-...+.+.++++.  . .+|.+|.
T Consensus        82 vVVitAG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN  130 (323)
T TIGR01759        82 AALLVGAFPR--KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN  130 (323)
T ss_pred             EEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence            9999998643  2335667789999999999998887764  3 5666654

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=97.49  E-value=6.4e-05  Score=61.98  Aligned_cols=70  Identities=20%  Similarity=0.269  Sum_probs=48.1

Q ss_pred             cCCCEEEEEcc----------------cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc
Q 029640           30 QSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP   93 (190)
Q Consensus        30 ~~~~~vlItG~----------------~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~   93 (190)
                      +++++++||||                +|.+|.++++.|..+ |++|+++.+......        ...+.  ..|+.+.
T Consensus       183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~-Ga~V~~~~g~~~~~~--------~~~~~--~~~v~~~  251 (390)
T TIGR00521       183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKR-GADVTLITGPVSLLT--------PPGVK--SIKVSTA  251 (390)
T ss_pred             cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHC-CCEEEEeCCCCccCC--------CCCcE--EEEeccH
Confidence            57899999998                367999999999999 899988876433211        11222  2233321


Q ss_pred             ----------ccCCcCEEEEccCCCCC
Q 029640           94 ----------LLIEVDQIYHLACPASP  110 (190)
Q Consensus        94 ----------~~~~~d~vi~~ag~~~~  110 (190)
                                ...++|++|++||+.+.
T Consensus       252 ~~~~~~~~~~~~~~~D~~i~~Aavsd~  278 (390)
T TIGR00521       252 EEMLEAALNELAKDFDIFISAAAVADF  278 (390)
T ss_pred             HHHHHHHHHhhcccCCEEEEccccccc
Confidence                      12358999999997653

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.48  E-value=0.0018  Score=53.31  Aligned_cols=111  Identities=12%  Similarity=0.077  Sum_probs=73.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCe----EEE----EcCCCCCChhhhhhhhcC-----CceEEEeccccccccCCcC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNE----VIV----VDNYFTGSKDNLRKWIGH-----PRFELIRHDVTEPLLIEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~----v~~----~~r~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~d   99 (190)
                      -+|.|+|++|.+|..++..|+..+-..    +.+    ++++.+.......++.+.     ..+.....|  ..++.+.|
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~--y~~~kdaD  122 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDP--YEVFEDAD  122 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCC--HHHhCCCC
Confidence            689999999999999999999884322    333    355555444333333221     122222111  24567899


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC---CeEEEEec
Q 029640          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTST  147 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~vSS  147 (190)
                      +||..||...  ...++..+.+..|..-...+.+...++.   .++|.+|.
T Consensus       123 IVVitAG~pr--kpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN  171 (387)
T TIGR01757       123 WALLIGAKPR--GPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN  171 (387)
T ss_pred             EEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence            9999998643  2334567789999999999999888743   36777775

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.47  E-value=0.0016  Score=52.92  Aligned_cols=106  Identities=24%  Similarity=0.286  Sum_probs=68.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh------------------------hhhhhhhcCCceEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK------------------------DNLRKWIGHPRFEL   85 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~------------------------~~~~~~~~~~~~~~   85 (190)
                      +...+|+|.| .|.+|..+++.|+..|-.++.+++++.-...                        ..+..+-+...+..
T Consensus        22 L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~  100 (339)
T PRK07688         22 LREKHVLIIG-AGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA  100 (339)
T ss_pred             hcCCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence            3668999999 6999999999999994458888887531110                        11111112234555


Q ss_pred             Eecccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCC
Q 029640           86 IRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD  153 (190)
Q Consensus        86 ~~~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~  153 (190)
                      +..+++..    .+.+.|+||.+..         ++        ..-..+-++|.+.++.+|+.++.+.||.
T Consensus       101 ~~~~~~~~~~~~~~~~~DlVid~~D---------n~--------~~r~~ln~~~~~~~iP~i~~~~~g~~G~  155 (339)
T PRK07688        101 IVQDVTAEELEELVTGVDLIIDATD---------NF--------ETRFIVNDAAQKYGIPWIYGACVGSYGL  155 (339)
T ss_pred             EeccCCHHHHHHHHcCCCEEEEcCC---------CH--------HHHHHHHHHHHHhCCCEEEEeeeeeeeE
Confidence            55555432    2356899988852         11        1123466788888889999888776663

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.46  E-value=0.0017  Score=45.46  Aligned_cols=103  Identities=21%  Similarity=0.344  Sum_probs=64.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEecc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIRHD   89 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~D   89 (190)
                      .++|+|.| .|.+|..+++.|+..|-.++.+++...-...+.                      +..+.+..++..+..+
T Consensus         2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            47899999 899999999999999445788876653222111                      1111122455666666


Q ss_pred             cccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           90 VTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        90 ~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      +...    .+.++|+||.+...                 ...-..+.+.|+++++++|..+..+.+|
T Consensus        81 ~~~~~~~~~~~~~d~vi~~~d~-----------------~~~~~~l~~~~~~~~~p~i~~~~~g~~G  130 (135)
T PF00899_consen   81 IDEENIEELLKDYDIVIDCVDS-----------------LAARLLLNEICREYGIPFIDAGVNGFYG  130 (135)
T ss_dssp             CSHHHHHHHHHTSSEEEEESSS-----------------HHHHHHHHHHHHHTT-EEEEEEEETTEE
T ss_pred             cccccccccccCCCEEEEecCC-----------------HHHHHHHHHHHHHcCCCEEEEEeecCEE
Confidence            6322    23479999998631                 1112356778999998998888755444

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>KOG4288 consensus Predicted oxidoreductase [General function prediction only]

Probab=97.45  E-value=0.00041  Score=52.61  Aligned_cols=106  Identities=19%  Similarity=0.241  Sum_probs=76.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEE-----EeccccccccCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL-----IRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~-----~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +-...++.|+.||.|+++++..... ++.|..+.|+..  ++.+..+.  ..+.|     +..|+.+....++.-++-++
T Consensus        51 e~e~tlvlggnpfsgs~vlk~A~~v-v~svgilsen~~--k~~l~sw~--~~vswh~gnsfssn~~k~~l~g~t~v~e~~  125 (283)
T KOG4288|consen   51 EVEWTLVLGGNPFSGSEVLKNATNV-VHSVGILSENEN--KQTLSSWP--TYVSWHRGNSFSSNPNKLKLSGPTFVYEMM  125 (283)
T ss_pred             hHHHHhhhcCCCcchHHHHHHHHhh-ceeeeEeecccC--cchhhCCC--cccchhhccccccCcchhhhcCCcccHHHh
Confidence            3356889999999999999999999 899988888644  22233332  23444     44455556666788888887


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEec
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST  147 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS  147 (190)
                      |...      +...+..+|-....+..+++++.++ +++|+|.
T Consensus       126 ggfg------n~~~m~~ing~ani~a~kaa~~~gv~~fvyISa  162 (283)
T KOG4288|consen  126 GGFG------NIILMDRINGTANINAVKAAAKAGVPRFVYISA  162 (283)
T ss_pred             cCcc------chHHHHHhccHhhHHHHHHHHHcCCceEEEEEh
Confidence            6432      4455667788888888999999998 8999996

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.45  E-value=0.0037  Score=49.99  Aligned_cols=111  Identities=13%  Similarity=0.071  Sum_probs=69.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-----CceEEEe-ccccccccCCcCEEEEcc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIR-HDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~-~D~~~~~~~~~d~vi~~a  105 (190)
                      +++|.|+|+ |.+|..++..++..+..+|.+++++.+.......++...     ....... .|.  .++.+.|+||.++
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~--~~~~~aDiVii~~   78 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY--EDIAGSDVVVITA   78 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH--HHHCCCCEEEECC
Confidence            478999996 999999999999873128999988665443322222111     1112211 233  3467899999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      |...  .......+.+..|+.....+++...+...  .+|.++.
T Consensus        79 ~~p~--~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN  120 (307)
T PRK06223         79 GVPR--KPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN  120 (307)
T ss_pred             CCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            8543  22234455667788777777777766542  4555554

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.45  E-value=0.0039  Score=49.96  Aligned_cols=110  Identities=15%  Similarity=0.168  Sum_probs=71.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC----CceEEEeccccccccCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      |+|.|.|+ |.+|..++..|+.++. .++.+++++.........++.+.    ........|.  ....+.|+||.+++.
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~--~~l~~aDiViita~~   77 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY--ADCKGADVVVITAGA   77 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH--HHhCCCCEEEEccCC
Confidence            57999995 9999999999999832 68999998765443222222211    1122222333  346789999999985


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ...  ...+..+.+..|......+++.+.+.+.  .++.++.
T Consensus        78 ~~~--~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tN  117 (308)
T cd05292          78 NQK--PGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTN  117 (308)
T ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            432  2334556778888888888887776653  4555543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.44  E-value=0.0031  Score=50.64  Aligned_cols=110  Identities=16%  Similarity=0.045  Sum_probs=71.7

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCC-ceEEEe--cc-ccccccCCcCEEEEccCCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHP-RFELIR--HD-VTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~--~D-~~~~~~~~~d~vi~~ag~~  108 (190)
                      ||.|+|++|.+|..++..|+..+- .++.+++++.  ..-...++.+.. ......  .| -..+++.+.|+||.+||..
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~   78 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVP   78 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCC
Confidence            588999999999999999988732 4788887755  221112222111 112221  11 1124677899999999864


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ..  ......+.+..|..-...+.+...+++-  .+|.+|.
T Consensus        79 ~~--~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN  117 (312)
T TIGR01772        79 RK--PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN  117 (312)
T ss_pred             CC--CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            32  2345667789999988888888877653  5666665

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.44  E-value=0.0021  Score=48.37  Aligned_cols=105  Identities=18%  Similarity=0.216  Sum_probs=65.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh----------------------hhhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~   87 (190)
                      +...+|+|.| .|.+|.++++.|+..+-.++.+++.+.-...+                      .+..+-+..++..+.
T Consensus        19 l~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~   97 (202)
T TIGR02356        19 LLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK   97 (202)
T ss_pred             hcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence            3678999999 89999999999999943688888776321111                      111111222344443


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ..+...    .+.++|+||.+...         .        ..-..+-+.|.++++.+|+.+..+.+|
T Consensus        98 ~~i~~~~~~~~~~~~D~Vi~~~d~---------~--------~~r~~l~~~~~~~~ip~i~~~~~g~~G  149 (202)
T TIGR02356        98 ERVTAENLELLINNVDLVLDCTDN---------F--------ATRYLINDACVALGTPLISAAVVGFGG  149 (202)
T ss_pred             hcCCHHHHHHHHhCCCEEEECCCC---------H--------HHHHHHHHHHHHcCCCEEEEEeccCeE
Confidence            344322    24568999888631         1        112346678888888898888655444

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=97.41  E-value=0.0013  Score=49.88  Aligned_cols=79  Identities=19%  Similarity=0.114  Sum_probs=58.2

Q ss_pred             ccCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEEecccccccc----------
Q 029640           29 FQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPLL----------   95 (190)
Q Consensus        29 ~~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~----------   95 (190)
                      +++||+++|+|-.  ..|+..+++.|.++ |.++......+ .....+.++... .....+.||+.+++.          
T Consensus         3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~-GAeL~fTy~~e-~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~   80 (259)
T COG0623           3 LLEGKRILIMGVANNRSIAWGIAKALAEQ-GAELAFTYQGE-RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKK   80 (259)
T ss_pred             ccCCceEEEEEecccccHHHHHHHHHHHc-CCEEEEEeccH-HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHH
Confidence            4689999999864  67999999999999 88888777654 334444444322 234568899998743          


Q ss_pred             --CCcCEEEEccCCCC
Q 029640           96 --IEVDQIYHLACPAS  109 (190)
Q Consensus        96 --~~~d~vi~~ag~~~  109 (190)
                        .++|.|+|+.+...
T Consensus        81 ~~g~lD~lVHsIaFa~   96 (259)
T COG0623          81 KWGKLDGLVHSIAFAP   96 (259)
T ss_pred             hhCcccEEEEEeccCC
Confidence              35999999998654

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=97.41  E-value=0.00049  Score=55.85  Aligned_cols=68  Identities=13%  Similarity=0.222  Sum_probs=42.8

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCe---EEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNE---VIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~---v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      +|+|.|++|++|+.+++.|.++ ++.   +..+.+...... .+. +   ........|+....+.++|+||.++|.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~-~hp~~~l~~~as~~~~g~-~~~-~---~~~~~~~~~~~~~~~~~~D~v~~a~g~   71 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEER-NFPIDKLVLLASDRSAGR-KVT-F---KGKELEVNEAKIESFEGIDIALFSAGG   71 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhC-CCChhhEEEEeccccCCC-eee-e---CCeeEEEEeCChHHhcCCCEEEECCCH
Confidence            5899999999999999999886 444   333334322111 111 1   123444455554556789999999863

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.39  E-value=0.0053  Score=49.17  Aligned_cols=109  Identities=17%  Similarity=0.195  Sum_probs=74.2

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC------CceEEEeccccccccCCcCEEEEccC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH------PRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      ||.|.|+ |.+|..++..|+.++- .++.+++...+.......++.+.      ..+.....|  -+++.+.|+||-.||
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~--y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD--YDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC--HHHhCCCCEEEECCC
Confidence            5789996 9999999999998743 47888888655554443333221      133444333  245678999999998


Q ss_pred             CCCCcccccC--chhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          107 PASPIFYKYN--PVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       107 ~~~~~~~~~~--~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ....  ..+.  ..+.++.|..-...+.+.+.+++-  .+|.+|-
T Consensus        78 ~~~k--pg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN  120 (307)
T cd05290          78 PSID--PGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN  120 (307)
T ss_pred             CCCC--CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            6432  1222  367789999999999988887763  5555555

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.39  E-value=0.0042  Score=49.87  Aligned_cols=111  Identities=13%  Similarity=0.089  Sum_probs=73.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCC----ceEEEe-ccccccccCCcCEEEEcc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHP----RFELIR-HDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~-~D~~~~~~~~~d~vi~~a  105 (190)
                      .+||.|+|+ |.+|..++..|+..+- .++.+++.+.+.......++.+..    ...... .|.  +++.+.|+||.+|
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy--~~~~~adivvita   79 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDY--SVTANSKVVIVTA   79 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCH--HHhCCCCEEEECC
Confidence            368999995 9999999999988843 478888876654443333332211    112222 333  2467899999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      |....  ..+...+.+..|..-...+.+..++++-  .+|.+|.
T Consensus        80 G~~~k--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN  121 (312)
T cd05293          80 GARQN--EGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN  121 (312)
T ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence            86432  2345667788899988888888877752  5666664

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=97.39  E-value=0.0033  Score=49.74  Aligned_cols=105  Identities=14%  Similarity=0.207  Sum_probs=70.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh----------------------hhhhhhcCCceEEEec
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRFELIRH   88 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~   88 (190)
                      ...+|+|.| .|.+|.++++.|+..|-..+.+++...-...+                      .+.++-+..+++.+..
T Consensus        18 ~~s~VLIvG-~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~   96 (286)
T cd01491          18 QKSNVLISG-LGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTG   96 (286)
T ss_pred             hcCcEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence            568899999 89999999999999954678887655322211                      1122222345666655


Q ss_pred             cccccccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCC
Q 029640           89 DVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD  153 (190)
Q Consensus        89 D~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~  153 (190)
                      ++..+.+.++|+||.+..         +.+        ....+-++|+++++.+|...+.+.+|.
T Consensus        97 ~~~~~~l~~fdvVV~~~~---------~~~--------~~~~in~~c~~~~ipfI~a~~~G~~G~  144 (286)
T cd01491          97 PLTTDELLKFQVVVLTDA---------SLE--------DQLKINEFCHSPGIKFISADTRGLFGS  144 (286)
T ss_pred             cCCHHHHhcCCEEEEecC---------CHH--------HHHHHHHHHHHcCCEEEEEeccccEEE
Confidence            555555678999888752         111        123456788888889999988776663

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.38  E-value=0.0045  Score=43.71  Aligned_cols=100  Identities=15%  Similarity=0.164  Sum_probs=62.8

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEecccc
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIRHDVT   91 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~D~~   91 (190)
                      +|+|.| .|.+|.++++.|+..+-.++.+++...-...+.                      +..+.+..++..+..++.
T Consensus         1 ~VliiG-~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~   79 (143)
T cd01483           1 RVLLVG-LGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS   79 (143)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence            488999 699999999999999445788886552211111                      111112234444444444


Q ss_pred             cc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceec
Q 029640           92 EP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (190)
Q Consensus        92 ~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~  151 (190)
                      ..    .+.++|+||.+...                 ......+.+.|+++++.+|.+++.+.+
T Consensus        80 ~~~~~~~~~~~diVi~~~d~-----------------~~~~~~l~~~~~~~~i~~i~~~~~g~~  126 (143)
T cd01483          80 EDNLDDFLDGVDLVIDAIDN-----------------IAVRRALNRACKELGIPVIDAGGLGLG  126 (143)
T ss_pred             hhhHHHHhcCCCEEEECCCC-----------------HHHHHHHHHHHHHcCCCEEEEcCCCcE
Confidence            32    24579999988731                 112345778899998889988875533

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK05442 malate dehydrogenase; Provisional

Probab=97.37  E-value=0.004  Score=50.30  Aligned_cols=113  Identities=12%  Similarity=0.067  Sum_probs=73.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-C-----eEEEEcCCCCC--ChhhhhhhhcC-----CceEEEeccccccccCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-N-----EVIVVDNYFTG--SKDNLRKWIGH-----PRFELIRHDVTEPLLIE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~-----~v~~~~r~~~~--~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~   97 (190)
                      +.++|.|+|++|.+|..++..|+..+- .     ++.+++.....  ......++.+.     ..+.....|  .+++.+
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~--y~~~~d   80 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDP--NVAFKD   80 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecCh--HHHhCC
Confidence            347899999999999999999988632 2     68888774322  22111111111     122222111  245668


Q ss_pred             cCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--C-eEEEEec
Q 029640           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTST  147 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~-~~i~vSS  147 (190)
                      .|+||-+||...  ...++..+.+..|..-...+.+...++.  . .+|.+|.
T Consensus        81 aDiVVitaG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN  131 (326)
T PRK05442         81 ADVALLVGARPR--GPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN  131 (326)
T ss_pred             CCEEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            999999998543  2234667789999999999998888743  2 6666665

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=97.36  E-value=0.0019  Score=52.26  Aligned_cols=97  Identities=18%  Similarity=0.203  Sum_probs=58.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhc--CCCeEEEEcCC-CCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~--~~~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      ..++|.|.||||++|..+++.|.++  ...++..+... .....  +. +. ...+.+.  ++....+.++|++|.+++.
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~--~~-~~-~~~~~v~--~~~~~~~~~~Dvvf~a~p~   76 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGET--LR-FG-GKSVTVQ--DAAEFDWSQAQLAFFVAGR   76 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCce--EE-EC-CcceEEE--eCchhhccCCCEEEECCCH
Confidence            4578999999999999999999994  34455555332 22211  11 11 1122222  4333334679999998852


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceec
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~  151 (190)
                      ..                  ...++..+.+.++++|=.|+.+=+
T Consensus        77 ~~------------------s~~~~~~~~~~g~~VIDlS~~fRl  102 (336)
T PRK08040         77 EA------------------SAAYAEEATNAGCLVIDSSGLFAL  102 (336)
T ss_pred             HH------------------HHHHHHHHHHCCCEEEECChHhcC
Confidence            21                  234555666667788877775533

>PLN02602 lactate dehydrogenase

Probab=97.36  E-value=0.0059  Score=49.78  Aligned_cols=110  Identities=15%  Similarity=0.193  Sum_probs=74.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC----CceEEEe-ccccccccCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIR-HDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~-~D~~~~~~~~~d~vi~~ag  106 (190)
                      ++|.|+| +|.+|..++..|+..+- .++.+++.+.+.......++.+.    ....... .|.  .++.+.|+||-+||
T Consensus        38 ~KI~IIG-aG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy--~~~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVG-VGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY--AVTAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH--HHhCCCCEEEECCC
Confidence            6999999 59999999999998843 47888888665544333333221    1122221 232  33678999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ....  ..++..+.+..|..-...+.+...+++-  .+|.+|-
T Consensus       115 ~~~k--~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN  155 (350)
T PLN02602        115 ARQI--PGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN  155 (350)
T ss_pred             CCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            6432  2345567788899888888888877653  5666664

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=97.34  E-value=0.00097  Score=49.43  Aligned_cols=70  Identities=24%  Similarity=0.366  Sum_probs=42.2

Q ss_pred             CCCEEEEEcc----------------cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-
Q 029640           31 SNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-   93 (190)
Q Consensus        31 ~~~~vlItG~----------------~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-   93 (190)
                      .|++|+||+|                +|-.|.++++.+..+ |++|+++........        ...+..+..+-.++ 
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~-Ga~V~li~g~~~~~~--------p~~~~~i~v~sa~em   72 (185)
T PF04127_consen    2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARR-GAEVTLIHGPSSLPP--------PPGVKVIRVESAEEM   72 (185)
T ss_dssp             TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHT-T-EEEEEE-TTS------------TTEEEEE-SSHHHH
T ss_pred             CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHC-CCEEEEEecCccccc--------cccceEEEecchhhh
Confidence            5677777764                799999999999999 899988876532111        22555655433322 


Q ss_pred             ------ccCCcCEEEEccCCCC
Q 029640           94 ------LLIEVDQIYHLACPAS  109 (190)
Q Consensus        94 ------~~~~~d~vi~~ag~~~  109 (190)
                            .+.+.|++|++|++.+
T Consensus        73 ~~~~~~~~~~~Di~I~aAAVsD   94 (185)
T PF04127_consen   73 LEAVKELLPSADIIIMAAAVSD   94 (185)
T ss_dssp             HHHHHHHGGGGSEEEE-SB--S
T ss_pred             hhhhccccCcceeEEEecchhh
Confidence                  2346899999998765

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=97.30  E-value=0.0048  Score=46.27  Aligned_cols=106  Identities=15%  Similarity=0.266  Sum_probs=65.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh------------------------hhhhhhcCCceEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD------------------------NLRKWIGHPRFEL   85 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~------------------------~~~~~~~~~~~~~   85 (190)
                      ++..+|+|.| .|.+|.++++.|+..|-.++++++.+.-...+                        .+.++-+..+++.
T Consensus        17 L~~s~VlviG-~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~   95 (198)
T cd01485          17 LRSAKVLIIG-AGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI   95 (198)
T ss_pred             HhhCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence            3668999999 55599999999999954678888655221111                        0112222234555


Q ss_pred             Eeccccc------cccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCC
Q 029640           86 IRHDVTE------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD  153 (190)
Q Consensus        86 ~~~D~~~------~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~  153 (190)
                      +..++.+      ..+.++|+||.+-.         +        ......+-+.|+++++.+|+.++.+.||.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~dvVi~~~d---------~--------~~~~~~ln~~c~~~~ip~i~~~~~G~~G~  152 (198)
T cd01485          96 VEEDSLSNDSNIEEYLQKFTLVIATEE---------N--------YERTAKVNDVCRKHHIPFISCATYGLIGY  152 (198)
T ss_pred             EecccccchhhHHHHHhCCCEEEECCC---------C--------HHHHHHHHHHHHHcCCCEEEEEeecCEEE
Confidence            4444431      12346888887642         1        11123466889999999999998776664

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.29  E-value=0.004  Score=52.85  Aligned_cols=76  Identities=20%  Similarity=0.133  Sum_probs=50.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      ..+++|+|+| .|.+|..+++.|.++ |.+|+++++++..............++.+...+-.. ....+|.||...|..
T Consensus        14 ~~~~~v~viG-~G~~G~~~A~~L~~~-G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~~~D~Vv~s~Gi~   89 (480)
T PRK01438         14 WQGLRVVVAG-LGVSGFAAADALLEL-GARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-LPEDTDLVVTSPGWR   89 (480)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccCCCCEEEECCCcC
Confidence            4678999999 688999999999998 889999986543322222222222345554433222 345689999988854

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=97.28  E-value=0.0052  Score=46.01  Aligned_cols=106  Identities=16%  Similarity=0.299  Sum_probs=65.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh----------------------hhhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~   87 (190)
                      +.+.+|+|.| .|.+|.++++.|+..|-.++.+++...-...+                      .+.++-+...++...
T Consensus        19 L~~s~VlIiG-~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~   97 (197)
T cd01492          19 LRSARILLIG-LKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT   97 (197)
T ss_pred             HHhCcEEEEc-CCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence            3678999999 55599999999999944678887654221111                      112222223444444


Q ss_pred             ccccc---cccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCC
Q 029640           88 HDVTE---PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD  153 (190)
Q Consensus        88 ~D~~~---~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~  153 (190)
                      ..+.+   ..+.++|+||.+..         +..        ....+-+.|+++++.+|+.++.+.+|.
T Consensus        98 ~~~~~~~~~~~~~~dvVi~~~~---------~~~--------~~~~ln~~c~~~~ip~i~~~~~G~~G~  149 (197)
T cd01492          98 DDISEKPEEFFSQFDVVVATEL---------SRA--------ELVKINELCRKLGVKFYATGVHGLFGF  149 (197)
T ss_pred             cCccccHHHHHhCCCEEEECCC---------CHH--------HHHHHHHHHHHcCCCEEEEEecCCEEE
Confidence            33332   12357899887752         111        123455788999999999888776663

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.27  E-value=0.0045  Score=42.47  Aligned_cols=70  Identities=16%  Similarity=0.316  Sum_probs=40.9

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhhcCCceE-EE--eccccccccCCcCEEEEccC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIGHPRFE-LI--RHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~~~~~~-~~--~~D~~~~~~~~~d~vi~~ag  106 (190)
                      ++.|+|++|.+|..+++.|.+..+.++..+ .++ ...........  +++. ..  ..+..+....++|+||.+.+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~DvV~~~~~   74 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA-RSAGKRVSEAG--PHLKGEVVLELEPEDFEELAVDIVFLALP   74 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEech-hhcCcCHHHHC--cccccccccccccCChhhcCCCEEEEcCC
Confidence            478999999999999999999756677666 332 21112222211  1111 11  12222222347899988874

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.26  E-value=0.0011  Score=52.39  Aligned_cols=75  Identities=17%  Similarity=0.255  Sum_probs=49.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      ..+++++|+|+ |.+|+.++..|... + .+|+++.|+.+........+.....+.+ ..+. .....+.|+|||+....
T Consensus       121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~-g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~~~-~~~~~~~DivInaTp~g  196 (278)
T PRK00258        121 LKGKRILILGA-GGAARAVILPLLDL-GVAEITIVNRTVERAEELAKLFGALGKAEL-DLEL-QEELADFDLIINATSAG  196 (278)
T ss_pred             CCCCEEEEEcC-cHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhhhccceee-cccc-hhccccCCEEEECCcCC
Confidence            46789999994 99999999999998 6 7999999975544333222211111222 1121 13345789999998644

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.24  E-value=0.003  Score=47.50  Aligned_cols=71  Identities=14%  Similarity=0.283  Sum_probs=52.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.+++|+|.| +|-+|...++.|++. |++|+++.+..   ...+..+.....+.+..-++....+.+.|+||-+.
T Consensus         8 l~~k~vLVIG-gG~va~~ka~~Ll~~-ga~V~VIs~~~---~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT   78 (202)
T PRK06718          8 LSNKRVVIVG-GGKVAGRRAITLLKY-GAHIVVISPEL---TENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAAT   78 (202)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHC-CCeEEEEcCCC---CHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcC
Confidence            5789999999 699999999999999 78999887532   22233444445677766666666667888887765

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.24  E-value=0.0034  Score=48.98  Aligned_cols=32  Identities=22%  Similarity=0.499  Sum_probs=26.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~   64 (190)
                      ++|.|+|++|.+|+.+++.+.+..+.++..+.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~   33 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAV   33 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            68999999999999999998876456666543

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.23  E-value=0.0012  Score=51.85  Aligned_cols=74  Identities=18%  Similarity=0.269  Sum_probs=49.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      .+++++|+|+ |.+|+.++..|++. +.+|.+..|+.+........+.....+...  +..+....++|+||++.+..
T Consensus       116 ~~k~vliiGa-Gg~g~aia~~L~~~-g~~v~v~~R~~~~~~~la~~~~~~~~~~~~--~~~~~~~~~~DivInatp~g  189 (270)
T TIGR00507       116 PNQRVLIIGA-GGAARAVALPLLKA-DCNVIIANRTVSKAEELAERFQRYGEIQAF--SMDELPLHRVDLIINATSAG  189 (270)
T ss_pred             cCCEEEEEcC-cHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHhhcCceEEe--chhhhcccCccEEEECCCCC
Confidence            4689999996 89999999999998 789999988654433332222111222222  22223334689999998754

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.22  E-value=0.0054  Score=47.96  Aligned_cols=110  Identities=16%  Similarity=0.094  Sum_probs=71.6

Q ss_pred             EEEEcccchHHHHHHHHHHhcCC----CeEEEEcCCCCCChhhhhhhhc---CC-ceEEEeccccccccCCcCEEEEccC
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEK----NEVIVVDNYFTGSKDNLRKWIG---HP-RFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~----~~v~~~~r~~~~~~~~~~~~~~---~~-~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      |.|+|++|.+|..++..|+.. +    .++.+++++.+.......++..   .. .......+-..+++.+.|+||..+|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~-~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADG-SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhC-CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCC
Confidence            479999899999999999988 5    6899998876554433322211   11 1222222211355678999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ....  ...........|+.....+.+...+...  .+|.+|-
T Consensus        80 ~~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tN  120 (263)
T cd00650          80 VGRK--PGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN  120 (263)
T ss_pred             CCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            5432  2234445677788888888888877653  5666654

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=97.21  E-value=0.0066  Score=48.46  Aligned_cols=108  Identities=19%  Similarity=0.177  Sum_probs=72.0

Q ss_pred             EEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC----CceEEEe-ccccccccCCcCEEEEccCCC
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIR-HDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~-~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      |.|.| +|.+|..++..|+..+- .++.+++++.+.......++.+.    ....... .|  ..++.++|+||.++|..
T Consensus         1 i~iiG-aG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~--~~~l~~aDiVIitag~p   77 (300)
T cd00300           1 ITIIG-AGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD--YADAADADIVVITAGAP   77 (300)
T ss_pred             CEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC--HHHhCCCCEEEEcCCCC
Confidence            46888 58999999999998832 68999988765544333333211    1122222 22  24667899999999854


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ..  ..++..+.+..|+.-...+.+..+++.-  .+|.+|.
T Consensus        78 ~~--~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN  116 (300)
T cd00300          78 RK--PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN  116 (300)
T ss_pred             CC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            32  2345567788899999989888877753  6666665

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=97.20  E-value=0.0023  Score=51.30  Aligned_cols=83  Identities=16%  Similarity=0.206  Sum_probs=52.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCCc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI  111 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~~  111 (190)
                      +.+|.|.|++|++|..+++.|.++..-++..+..+...            ..     +..+....++|+||.+....   
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~------------~~-----~~~~~~~~~~DvvFlalp~~---   61 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK------------DA-----AARRELLNAADVAILCLPDD---   61 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC------------cc-----cCchhhhcCCCEEEECCCHH---
Confidence            46899999999999999999999854455555432211            00     11112234689998887321   


Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          112 FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       112 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                                     ....+...+.+.++++|=.|+..
T Consensus        62 ---------------~s~~~~~~~~~~g~~VIDlSadf   84 (313)
T PRK11863         62 ---------------AAREAVALIDNPATRVIDASTAH   84 (313)
T ss_pred             ---------------HHHHHHHHHHhCCCEEEECChhh
Confidence                           02334455555677888788755

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.19  E-value=0.0041  Score=47.61  Aligned_cols=105  Identities=18%  Similarity=0.180  Sum_probs=64.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +.+.+|+|.| .|.+|.++++.|+..|-.++.+++.+.-...+.                      +..+-+..++..+.
T Consensus        19 L~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~   97 (228)
T cd00757          19 LKNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN   97 (228)
T ss_pred             HhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence            3668999999 899999999999999446777775542111111                      11111123445554


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      .++...    .+.++|+||.+...         +.        .-..+-+.|.++++.+|+.+..+.+|
T Consensus        98 ~~i~~~~~~~~~~~~DvVi~~~d~---------~~--------~r~~l~~~~~~~~ip~i~~g~~g~~g  149 (228)
T cd00757          98 ERLDAENAEELIAGYDLVLDCTDN---------FA--------TRYLINDACVKLGKPLVSGAVLGFEG  149 (228)
T ss_pred             ceeCHHHHHHHHhCCCEEEEcCCC---------HH--------HHHHHHHHHHHcCCCEEEEEeccCEE
Confidence            444321    23469999998731         11        12346678888888888887655433

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.19  E-value=0.0059  Score=48.90  Aligned_cols=110  Identities=15%  Similarity=0.107  Sum_probs=70.7

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-----CceEEE-eccccccccCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELI-RHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~-~~D~~~~~~~~~d~vi~~ag  106 (190)
                      |+|.|.| +|++|..++..|+.++..+|.+++............+...     ...... ..|..  +..++|+||-++|
T Consensus         2 ~KV~VIG-aG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~--~~~~aDiVIitag   78 (305)
T TIGR01763         2 KKISVIG-AGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYA--DTANSDIVVITAG   78 (305)
T ss_pred             CEEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHH--HhCCCCEEEEcCC
Confidence            6799999 5999999999999983237999888544333222212111     011121 23443  2567999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ....  ...+..+.+..|......+++...++.-  .+|.+|.
T Consensus        79 ~p~~--~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN  119 (305)
T TIGR01763        79 LPRK--PGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN  119 (305)
T ss_pred             CCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            5332  2234556778899988888888777653  5666665

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=97.17  E-value=0.0063  Score=47.17  Aligned_cols=94  Identities=20%  Similarity=0.257  Sum_probs=54.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCe-EEEEcCCCCCCh-hhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNE-VIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~-v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      +++|.|.|++|-.|+.+++.+.+..+.+ +-++.|...... ....++.....+.....|-.......+|++|.+-.+. 
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P~-   80 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTPE-   80 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCch-
Confidence            5789999999999999999999986555 444555433221 1111111111111111121333456789999886421 


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCCeEE
Q 029640          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL  143 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i  143 (190)
                                       ++..+++.|.++++++|
T Consensus        81 -----------------~~~~~l~~~~~~~~~lV   97 (266)
T COG0289          81 -----------------ATLENLEFALEHGKPLV   97 (266)
T ss_pred             -----------------hhHHHHHHHHHcCCCeE
Confidence                             13456777777775554

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.17  E-value=0.0082  Score=48.38  Aligned_cols=112  Identities=11%  Similarity=0.095  Sum_probs=70.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-----CceEEEe-ccccccccCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIR-HDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~-~D~~~~~~~~~d~vi~~  104 (190)
                      ..++|.|+|+ |.+|..++..|+..+-.++.+++++.+.......++...     ....... .|.  +++.+.|+||.+
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~--~~l~~ADiVVit   80 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY--EDIKDSDVVVIT   80 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH--HHhCCCCEEEEC
Confidence            4579999995 999999999998883268888888665433221111111     1122221 232  256789999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      +|....  ......+.+..|..-...+.+.+.+..-  .+|++|.
T Consensus        81 ag~~~~--~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN  123 (319)
T PTZ00117         81 AGVQRK--EEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN  123 (319)
T ss_pred             CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            986432  2234456677788777777777766642  4666654

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.17  E-value=0.0035  Score=50.90  Aligned_cols=97  Identities=14%  Similarity=0.215  Sum_probs=57.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCe---EEEEc-CCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNE---VIVVD-NYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~---v~~~~-r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      ..++|.|.|+||++|+.+++.|.++....   +..+. ++.....-   .+. ...+.+...|.  ..+.++|++|.+++
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~---~~~-~~~l~v~~~~~--~~~~~~Divf~a~~   77 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTV---QFK-GREIIIQEAKI--NSFEGVDIAFFSAG   77 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCe---eeC-CcceEEEeCCH--HHhcCCCEEEECCC
Confidence            34689999999999999999999764545   44443 22222211   111 11333333332  33467999999885


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceec
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~  151 (190)
                      ...                  ...+...+.+.++.+|=.||..=+
T Consensus        78 ~~~------------------s~~~~~~~~~~G~~VID~Ss~fR~  104 (347)
T PRK06728         78 GEV------------------SRQFVNQAVSSGAIVIDNTSEYRM  104 (347)
T ss_pred             hHH------------------HHHHHHHHHHCCCEEEECchhhcC
Confidence            221                  234555566667777777765544

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.16  E-value=0.019  Score=46.33  Aligned_cols=114  Identities=11%  Similarity=0.052  Sum_probs=70.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-----CCceEEEe-ccccccccCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~D~~~~~~~~~d~vi~~  104 (190)
                      +.++|.|+| +|.+|..++..++..+-.++.+++.+++.......++..     ........ .|.  +++.+.|+||.+
T Consensus         5 ~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~--~~l~~aDiVI~t   81 (321)
T PTZ00082          5 KRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY--EDIAGSDVVIVT   81 (321)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH--HHhCCCCEEEEC
Confidence            457899999 699999999999888335788888866543222111111     11223322 343  356789999999


Q ss_pred             cCCCCCccc---ccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          105 ACPASPIFY---KYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       105 ag~~~~~~~---~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      +|.......   +.+..+.+..|..-...+.+.+.+..-  .+|.+|.
T Consensus        82 ag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN  129 (321)
T PTZ00082         82 AGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN  129 (321)
T ss_pred             CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            986432111   013455677787777777777766542  5666655

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=97.13  E-value=0.011  Score=45.76  Aligned_cols=105  Identities=14%  Similarity=0.120  Sum_probs=64.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +.+.+|+|.| .|.+|..+++.|+..|-.++.+++.+.-...+.                      +.++-+..++..+.
T Consensus        22 L~~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~  100 (240)
T TIGR02355        22 LKASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN  100 (240)
T ss_pred             HhCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            3668999999 899999999999999546788876653332211                      11111122344443


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ..+...    .+.+.|+||.+..         +++        .-..+-++|.++++.+|+.++.+.+|
T Consensus       101 ~~i~~~~~~~~~~~~DlVvd~~D---------~~~--------~r~~ln~~~~~~~ip~v~~~~~g~~G  152 (240)
T TIGR02355       101 AKLDDAELAALIAEHDIVVDCTD---------NVE--------VRNQLNRQCFAAKVPLVSGAAIRMEG  152 (240)
T ss_pred             ccCCHHHHHHHhhcCCEEEEcCC---------CHH--------HHHHHHHHHHHcCCCEEEEEecccEe
Confidence            333221    2346888888863         111        12345688888888898877654444

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.12  E-value=0.0018  Score=46.11  Aligned_cols=75  Identities=17%  Similarity=0.228  Sum_probs=47.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      ++++++|+|+ |.+|..+++.|.+.+...|.+.+|+.+........+.. ..+.....|.. ....++|+||++....
T Consensus        18 ~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~Dvvi~~~~~~   92 (155)
T cd01065          18 KGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-LGIAIAYLDLE-ELLAEADLIINTTPVG   92 (155)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-cccceeecchh-hccccCCEEEeCcCCC
Confidence            5689999995 99999999999998447899988865443332222211 00111112221 2246799999998643

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.09  E-value=0.0028  Score=51.89  Aligned_cols=70  Identities=19%  Similarity=0.255  Sum_probs=42.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCe---EEEEcCCCCCChhhhhhhhcCCceEEEeccccc-cccCCcCEEEEccC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNE---VIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PLLIEVDQIYHLAC  106 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~---v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~d~vi~~ag  106 (190)
                      |++|.|.||||++|+.+.+.|+++....   +..+......  .....+.+ .  .....++.+ ..+.++|++|.+++
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg--~~~~~f~g-~--~~~v~~~~~~~~~~~~Divf~a~~   74 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAG--GAAPSFGG-K--EGTLQDAFDIDALKKLDIIITCQG   74 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhC--CcccccCC-C--cceEEecCChhHhcCCCEEEECCC
Confidence            3689999999999999999777764544   5555442111  11111111 1  122233332 34567999999985

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.07  E-value=0.0047  Score=46.57  Aligned_cols=71  Identities=11%  Similarity=0.118  Sum_probs=54.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.+++|+|.| +|-+|..-++.|++. |..|++++....   +.+..+....++.++..+.....+.+.+.||-+-
T Consensus         7 l~gk~vlVvG-gG~va~rk~~~Ll~~-ga~VtVvsp~~~---~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at   77 (205)
T TIGR01470         7 LEGRAVLVVG-GGDVALRKARLLLKA-GAQLRVIAEELE---SELTLLAEQGGITWLARCFDADILEGAFLVIAAT   77 (205)
T ss_pred             cCCCeEEEEC-cCHHHHHHHHHHHHC-CCEEEEEcCCCC---HHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECC
Confidence            4789999999 899999999999998 889999875432   3344444455888888887766667788877654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.05  E-value=0.0074  Score=49.72  Aligned_cols=104  Identities=19%  Similarity=0.167  Sum_probs=63.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh----------------------hhhhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~   87 (190)
                      +..++|+|.| .|.+|..+++.|+..|-.++.++++..-...                      ..+.++.+...+..+.
T Consensus       133 l~~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~  211 (376)
T PRK08762        133 LLEARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ  211 (376)
T ss_pred             HhcCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            3678999998 7899999999999994468888877521110                      1111111222333443


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceec
Q 029640           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~  151 (190)
                      ..+...    .+.++|+||++...         ..        .-..+-++|.+.++.+|+.+..+.+
T Consensus       212 ~~~~~~~~~~~~~~~D~Vv~~~d~---------~~--------~r~~ln~~~~~~~ip~i~~~~~g~~  262 (376)
T PRK08762        212 ERVTSDNVEALLQDVDVVVDGADN---------FP--------TRYLLNDACVKLGKPLVYGAVFRFE  262 (376)
T ss_pred             ccCChHHHHHHHhCCCEEEECCCC---------HH--------HHHHHHHHHHHcCCCEEEEEeccCE
Confidence            333321    23569999998731         11        1123667889999899988765433

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=97.02  E-value=0.017  Score=44.36  Aligned_cols=102  Identities=12%  Similarity=0.139  Sum_probs=62.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEec
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIRH   88 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~   88 (190)
                      .+.+|+|.| .|.+|.++++.|+..|-.++++++...-...+.                      +..+-+..++..+..
T Consensus        10 ~~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~   88 (231)
T cd00755          10 RNAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE   88 (231)
T ss_pred             hCCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence            568899999 899999999999999546888876553221111                      111111223444443


Q ss_pred             ccccc----c-cCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEeccee
Q 029640           89 DVTEP----L-LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV  150 (190)
Q Consensus        89 D~~~~----~-~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~  150 (190)
                      .+..+    . ..++|+||.+...                 ...-..+.+.|.++++++|...+++-
T Consensus        89 ~i~~~~~~~l~~~~~D~VvdaiD~-----------------~~~k~~L~~~c~~~~ip~I~s~g~g~  138 (231)
T cd00755          89 FLTPDNSEDLLGGDPDFVVDAIDS-----------------IRAKVALIAYCRKRKIPVISSMGAGG  138 (231)
T ss_pred             ecCHhHHHHHhcCCCCEEEEcCCC-----------------HHHHHHHHHHHHHhCCCEEEEeCCcC
Confidence            33311    1 1358999888631                 11223577889888888887766443

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.02  E-value=0.0016  Score=48.97  Aligned_cols=70  Identities=19%  Similarity=0.191  Sum_probs=45.5

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      .+.+|+++|+| .|.+|+.+++.|.+. |++|++.+++.+........+    ....  .|..+....++|+++.+|.
T Consensus        25 ~l~gk~v~I~G-~G~vG~~~A~~L~~~-G~~Vvv~D~~~~~~~~~~~~~----g~~~--v~~~~l~~~~~Dv~vp~A~   94 (200)
T cd01075          25 SLEGKTVAVQG-LGKVGYKLAEHLLEE-GAKLIVADINEEAVARAAELF----GATV--VAPEEIYSVDADVFAPCAL   94 (200)
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHc----CCEE--EcchhhccccCCEEEeccc
Confidence            35789999999 579999999999998 899998877543222211111    1222  2222222336888887764

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.02  E-value=0.015  Score=45.02  Aligned_cols=102  Identities=16%  Similarity=0.123  Sum_probs=63.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +...+|+|.| .|.+|..+++.|+..|-.++.+++.+.-...+.                      +..+-+..++..+.
T Consensus        30 L~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~  108 (245)
T PRK05690         30 LKAARVLVVG-LGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN  108 (245)
T ss_pred             hcCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence            4678999999 599999999999999546788876653222111                      11111223445554


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      ..+...    .+.++|+||.+..         +++        .-..+-++|.++++.+|+.++.+
T Consensus       109 ~~i~~~~~~~~~~~~DiVi~~~D---------~~~--------~r~~ln~~~~~~~ip~v~~~~~g  157 (245)
T PRK05690        109 ARLDDDELAALIAGHDLVLDCTD---------NVA--------TRNQLNRACFAAKKPLVSGAAIR  157 (245)
T ss_pred             ccCCHHHHHHHHhcCCEEEecCC---------CHH--------HHHHHHHHHHHhCCEEEEeeecc
Confidence            444432    2356999998862         111        12346678888888888766543

>PRK08328 hypothetical protein; Provisional

Probab=96.99  E-value=0.0065  Score=46.67  Aligned_cols=105  Identities=17%  Similarity=0.217  Sum_probs=63.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh-----------------------hhhhhcCCceEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-----------------------LRKWIGHPRFELI   86 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-----------------------~~~~~~~~~~~~~   86 (190)
                      +.+.+|+|.| .|.+|.++++.|+..|-.++.+++.+.-...+.                       +..+-+...+..+
T Consensus        25 L~~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~  103 (231)
T PRK08328         25 LKKAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF  103 (231)
T ss_pred             HhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEE
Confidence            3668999999 899999999999999546788876543221111                       1111112233333


Q ss_pred             ecccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           87 RHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        87 ~~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ...+...    .+.++|+||.+...         .        ..-..+-+.|.++++.+|+.++.+.+|
T Consensus       104 ~~~~~~~~~~~~l~~~D~Vid~~d~---------~--------~~r~~l~~~~~~~~ip~i~g~~~g~~G  156 (231)
T PRK08328        104 VGRLSEENIDEVLKGVDVIVDCLDN---------F--------ETRYLLDDYAHKKGIPLVHGAVEGTYG  156 (231)
T ss_pred             eccCCHHHHHHHHhcCCEEEECCCC---------H--------HHHHHHHHHHHHcCCCEEEEeeccCEE
Confidence            3333221    13467888877621         1        111235567888888999888776655

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=0.00099  Score=53.15  Aligned_cols=74  Identities=11%  Similarity=0.153  Sum_probs=48.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecc---ccccccCCcCEEEEccCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD---VTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D---~~~~~~~~~d~vi~~ag~~~  109 (190)
                      ..++|-|++||.|.-+++.|+.+ +.+..+-.|+..+....-..+.  .....+.+.   ..+....+.++|+||+|+..
T Consensus         7 ~d~iiYGAtGy~G~lvae~l~~~-g~~~aLAgRs~~kl~~l~~~LG--~~~~~~p~~~p~~~~~~~~~~~VVlncvGPyt   83 (382)
T COG3268           7 YDIIIYGATGYAGGLVAEYLARE-GLTAALAGRSSAKLDALRASLG--PEAAVFPLGVPAALEAMASRTQVVLNCVGPYT   83 (382)
T ss_pred             eeEEEEccccchhHHHHHHHHHc-CCchhhccCCHHHHHHHHHhcC--ccccccCCCCHHHHHHHHhcceEEEecccccc
Confidence            56899999999999999999999 6676666775444332222111  122223222   22334567999999999654

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=96.96  E-value=0.017  Score=46.34  Aligned_cols=101  Identities=16%  Similarity=0.285  Sum_probs=64.6

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEecccc
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIRHDVT   91 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~D~~   91 (190)
                      +|+|.| .|.+|.++++.|+..|-.++.+++.+.-...+.                      +.++-+..++..+..++.
T Consensus         1 kVlIVG-aGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~   79 (312)
T cd01489           1 KVLVVG-AGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK   79 (312)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence            589999 799999999999999546888876653222111                      111112235555656665


Q ss_pred             cc-----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           92 EP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        92 ~~-----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      +.     .+.++|+||.+..         +        ...-..+-+.|..+++.+|..++.+.+|
T Consensus        80 ~~~~~~~f~~~~DvVv~a~D---------n--------~~ar~~in~~c~~~~ip~I~~gt~G~~G  128 (312)
T cd01489          80 DPDFNVEFFKQFDLVFNALD---------N--------LAARRHVNKMCLAADVPLIESGTTGFLG  128 (312)
T ss_pred             CccchHHHHhcCCEEEECCC---------C--------HHHHHHHHHHHHHCCCCEEEEecCccee
Confidence            42     2357899988862         1        1112345678888888888888766555

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.96  E-value=0.013  Score=48.01  Aligned_cols=96  Identities=14%  Similarity=0.122  Sum_probs=56.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCC---eEEEE-cCCCCCChhhhhhhhcCCceEEEecccccc-ccCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKN---EVIVV-DNYFTGSKDNLRKWIGHPRFELIRHDVTEP-LLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~---~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~d~vi~~ag~  107 (190)
                      ++|.|.|+||.+|+.+++.|..+...   +++.+ .++..+....    +.....  ...++.+. .+.++|++|.++|.
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~----f~~~~~--~v~~~~~~~~~~~vDivffa~g~   74 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPS----FGGTTG--TLQDAFDIDALKALDIIITCQGG   74 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCC----CCCCcc--eEEcCcccccccCCCEEEEcCCH
Confidence            47899999999999999999954333   23333 2222222111    111122  33345443 66789999999962


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      .                  .+..+...+++.|..-+.++.++.|.
T Consensus        75 ~------------------~s~~~~p~~~~aG~~~~VIDnSSa~R  101 (366)
T TIGR01745        75 D------------------YTNEIYPKLRESGWQGYWIDAASSLR  101 (366)
T ss_pred             H------------------HHHHHHHHHHhCCCCeEEEECChhhh
Confidence            1                  13456667778885444455555554

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.95  E-value=0.011  Score=50.01  Aligned_cols=76  Identities=16%  Similarity=0.123  Sum_probs=51.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh-hhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      ..+++|+|.| .|..|..+++.|.+. |+.|++.++++...... ...+ ...++.+...+-......++|.||...|..
T Consensus        12 ~~~~~i~v~G-~G~sG~a~a~~L~~~-G~~V~~~D~~~~~~~~~~~~~l-~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~   88 (458)
T PRK01710         12 IKNKKVAVVG-IGVSNIPLIKFLVKL-GAKVTAFDKKSEEELGEVSNEL-KELGVKLVLGENYLDKLDGFDVIFKTPSMR   88 (458)
T ss_pred             hcCCeEEEEc-ccHHHHHHHHHHHHC-CCEEEEECCCCCccchHHHHHH-HhCCCEEEeCCCChHHhccCCEEEECCCCC
Confidence            3578999999 889999999999999 89999998765432211 1122 123455554433323345789999998754

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.92  E-value=0.022  Score=43.13  Aligned_cols=106  Identities=19%  Similarity=0.230  Sum_probs=63.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh---------------------hhhhhhcCCceEEEec
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---------------------NLRKWIGHPRFELIRH   88 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~---------------------~~~~~~~~~~~~~~~~   88 (190)
                      +...+|+|.| .|.+|..+++.|+..+-.++.+++.+.-...+                     .+..+-+..++..+..
T Consensus        26 L~~~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~  104 (212)
T PRK08644         26 LKKAKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE  104 (212)
T ss_pred             HhCCCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence            3668999999 79999999999999944678888775211110                     0111112234444444


Q ss_pred             ccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CCeEEEEecceecCC
Q 029640           89 DVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GARILLTSTSEVYGD  153 (190)
Q Consensus        89 D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~i~vSS~~~~~~  153 (190)
                      .+.+.    .+.++|+||.+..         ++        ..-..+.+.|.+. ++.+|+.+...-|+.
T Consensus       105 ~i~~~~~~~~~~~~DvVI~a~D---------~~--------~~r~~l~~~~~~~~~~p~I~~~~~~~~~~  157 (212)
T PRK08644        105 KIDEDNIEELFKDCDIVVEAFD---------NA--------ETKAMLVETVLEHPGKKLVAASGMAGYGD  157 (212)
T ss_pred             ecCHHHHHHHHcCCCEEEECCC---------CH--------HHHHHHHHHHHHhCCCCEEEeehhhccCC
Confidence            44332    2346899888841         11        1123456777777 778888766554443

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.89  E-value=0.014  Score=47.76  Aligned_cols=105  Identities=15%  Similarity=0.043  Sum_probs=66.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +.+.+|+|.| .|.+|..+++.|+..|-.++.+++.+.-...+.                      +.++-+..++..+.
T Consensus        26 L~~~~VlivG-~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~  104 (355)
T PRK05597         26 LFDAKVAVIG-AGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV  104 (355)
T ss_pred             HhCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence            4678999999 799999999999999446788876653221111                      11111223455554


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ..+..+    .+.++|+||.+...         .        ..-..+-++|.+.++.+|+.+..+.+|
T Consensus       105 ~~i~~~~~~~~~~~~DvVvd~~d~---------~--------~~r~~~n~~c~~~~ip~v~~~~~g~~g  156 (355)
T PRK05597        105 RRLTWSNALDELRDADVILDGSDN---------F--------DTRHLASWAAARLGIPHVWASILGFDA  156 (355)
T ss_pred             eecCHHHHHHHHhCCCEEEECCCC---------H--------HHHHHHHHHHHHcCCCEEEEEEecCeE
Confidence            444432    23579999988731         1        111235678888888899887655443

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.88  E-value=0.0041  Score=49.28  Aligned_cols=74  Identities=16%  Similarity=0.139  Sum_probs=48.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEEeccccccccCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      .+++++|.| +|..|++++..|+..+-.+|.++.|+.++.......+... ..+.....+-......+.|+||++.
T Consensus       126 ~~k~vlIlG-aGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaT  200 (284)
T PRK12549        126 SLERVVQLG-AGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHAT  200 (284)
T ss_pred             cCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECC
Confidence            568999999 6889999999999994358999999765554443333211 1222222221122345689999994

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.86  E-value=0.0036  Score=49.54  Aligned_cols=77  Identities=12%  Similarity=0.010  Sum_probs=48.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEec-cccccccCCcCEEEEccCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~d~vi~~ag~~  108 (190)
                      .+++++|.| +|..|+.++..|.+.+-.+|+++.|+.++.......+.....+..+.. +-......+.|+|||+....
T Consensus       124 ~~k~vlvlG-aGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g  201 (282)
T TIGR01809       124 AGFRGLVIG-AGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD  201 (282)
T ss_pred             CCceEEEEc-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence            578999999 799999999999999446899999975544433332211111211110 10112235689999997644

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=96.83  E-value=0.0034  Score=47.13  Aligned_cols=39  Identities=31%  Similarity=0.324  Sum_probs=31.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD   72 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~   72 (190)
                      ||++.|.| +|.||..+++.|.+. +++|.+-.|+.++...
T Consensus         1 m~~~~i~G-tGniG~alA~~~a~a-g~eV~igs~r~~~~~~   39 (211)
T COG2085           1 MMIIAIIG-TGNIGSALALRLAKA-GHEVIIGSSRGPKALA   39 (211)
T ss_pred             CcEEEEec-cChHHHHHHHHHHhC-CCeEEEecCCChhHHH
Confidence            46666666 999999999999999 8999998776655443

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.81  E-value=0.0039  Score=49.33  Aligned_cols=36  Identities=14%  Similarity=0.277  Sum_probs=32.1

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      .+.+++++|.|++|.+|+.++..|++. +..|+++.|
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~-gatVtv~~~  191 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNA-NATVTICHS  191 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhC-CCEEEEEeC
Confidence            358999999999999999999999998 678888876

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.78  E-value=0.01  Score=42.78  Aligned_cols=68  Identities=16%  Similarity=0.228  Sum_probs=47.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.+++|+|.| +|-+|...++.|++. +++|+++..  +.. ..+..+   ..+.+..-.+......+.|.||-+.
T Consensus        11 l~~~~vlVvG-GG~va~rka~~Ll~~-ga~V~VIsp--~~~-~~l~~l---~~i~~~~~~~~~~dl~~a~lViaaT   78 (157)
T PRK06719         11 LHNKVVVIIG-GGKIAYRKASGLKDT-GAFVTVVSP--EIC-KEMKEL---PYITWKQKTFSNDDIKDAHLIYAAT   78 (157)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEcC--ccC-HHHHhc---cCcEEEecccChhcCCCceEEEECC
Confidence            5789999999 899999999999998 899998842  222 222222   2455555555555566778777654

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=96.77  E-value=0.02  Score=47.45  Aligned_cols=104  Identities=19%  Similarity=0.129  Sum_probs=64.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEec
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIRH   88 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~   88 (190)
                      ...+|+|.| .|.+|..+++.|+..|-.++.+++.+.-...+.                      +.++-+..++..+..
T Consensus        41 ~~~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  119 (392)
T PRK07878         41 KNARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF  119 (392)
T ss_pred             hcCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence            568999999 899999999999999446777776543222111                      111111123444444


Q ss_pred             ccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           89 DVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        89 D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      .+...    .+.++|+||.+..         +        ...-..+-++|.+.++.+|+.+..+.+|
T Consensus       120 ~i~~~~~~~~~~~~D~Vvd~~d---------~--------~~~r~~ln~~~~~~~~p~v~~~~~g~~G  170 (392)
T PRK07878        120 RLDPSNAVELFSQYDLILDGTD---------N--------FATRYLVNDAAVLAGKPYVWGSIYRFEG  170 (392)
T ss_pred             cCChhHHHHHHhcCCEEEECCC---------C--------HHHHHHHHHHHHHcCCCEEEEEeccCEE
Confidence            44332    2346898887762         1        1112345678888888999888766555

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=96.77  E-value=0.006  Score=48.72  Aligned_cols=81  Identities=16%  Similarity=0.204  Sum_probs=51.1

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCCccc
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFY  113 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~~~~  113 (190)
                      +|.|.|++||.|..+++.|..+...++..+..+...              .  ..|. +....++|++|.+.....    
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~--------------~--~~~~-~~~~~~~D~vFlalp~~~----   61 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK--------------D--AAER-AKLLNAADVAILCLPDDA----   61 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc--------------C--cCCH-hHhhcCCCEEEECCCHHH----
Confidence            699999999999999999999965565555332110              0  0011 112246899998874210    


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          114 KYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       114 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                                    +..++..+.+.++++|=.|+..
T Consensus        62 --------------s~~~~~~~~~~g~~VIDlSadf   83 (310)
T TIGR01851        62 --------------AREAVSLVDNPNTCIIDASTAY   83 (310)
T ss_pred             --------------HHHHHHHHHhCCCEEEECChHH
Confidence                          2334455555677888777755

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>cd05295 MDH_like Malate dehydrogenase-like

Probab=96.76  E-value=0.024  Score=47.65  Aligned_cols=111  Identities=12%  Similarity=0.089  Sum_probs=69.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhc---C-CCeE--EEEcCC--CCCChhhhhhhhcC-----CceEEEeccccccccCCcC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMEN---E-KNEV--IVVDNY--FTGSKDNLRKWIGH-----PRFELIRHDVTEPLLIEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~---~-~~~v--~~~~r~--~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~d   99 (190)
                      .+|+||||+|.||.+|+..++.-   | ...|  .+++..  .+...-...++.+.     ..+.... | ...++.++|
T Consensus       124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~-~-~~ea~~daD  201 (452)
T cd05295         124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT-D-LDVAFKDAH  201 (452)
T ss_pred             eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE-C-CHHHhCCCC
Confidence            67999999999999999999983   1 2333  334442  12221111112111     1233321 2 235677899


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC---CeEEEEec
Q 029640          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTST  147 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~vSS  147 (190)
                      +||-.+|...  ...+...+.++.|..-...+.+...++.   .+++.+.|
T Consensus       202 vvIitag~pr--k~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t  250 (452)
T cd05295         202 VIVLLDDFLI--KEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR  250 (452)
T ss_pred             EEEECCCCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence            9999998543  2334566788999999888888887664   46777765

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.75  E-value=0.0036  Score=47.60  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=32.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      |+|.|+||+|.+|..++..|.+. +++|.+..|+++..
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~-G~~V~v~~r~~~~~   37 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKA-GNKIIIGSRDLEKA   37 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhC-CCEEEEEEcCHHHH
Confidence            57999999999999999999998 79999888865443

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK04148 hypothetical protein; Provisional

Probab=96.73  E-value=0.018  Score=40.28  Aligned_cols=88  Identities=24%  Similarity=0.333  Sum_probs=61.8

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccC---CcCEEEEccCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI---EVDQIYHLACP  107 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~---~~d~vi~~ag~  107 (190)
                      +++++++.| .| -|..++..|.+. |++|++++.++..... ..    ...+..+..|+.+....   +.|.|.-+=  
T Consensus        16 ~~~kileIG-~G-fG~~vA~~L~~~-G~~ViaIDi~~~aV~~-a~----~~~~~~v~dDlf~p~~~~y~~a~liysir--   85 (134)
T PRK04148         16 KNKKIVELG-IG-FYFKVAKKLKES-GFDVIVIDINEKAVEK-AK----KLGLNAFVDDLFNPNLEIYKNAKLIYSIR--   85 (134)
T ss_pred             cCCEEEEEE-ec-CCHHHHHHHHHC-CCEEEEEECCHHHHHH-HH----HhCCeEEECcCCCCCHHHHhcCCEEEEeC--
Confidence            457899999 77 899999999998 8999999886553221 11    22578899999987653   567664332  


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEE
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL  143 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i  143 (190)
                              .+.+.       ...+++.+++.+..++
T Consensus        86 --------pp~el-------~~~~~~la~~~~~~~~  106 (134)
T PRK04148         86 --------PPRDL-------QPFILELAKKINVPLI  106 (134)
T ss_pred             --------CCHHH-------HHHHHHHHHHcCCCEE
Confidence                    22232       2468889999888544

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.71  E-value=0.0026  Score=50.48  Aligned_cols=69  Identities=13%  Similarity=0.081  Sum_probs=46.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.+++++|+| .|.+|+.+++.|... |.+|.+..|+......    .. ......+..+-......+.|+||++.
T Consensus       149 l~gk~v~IiG-~G~iG~avA~~L~~~-G~~V~v~~R~~~~~~~----~~-~~g~~~~~~~~l~~~l~~aDiVint~  217 (287)
T TIGR02853       149 IHGSNVMVLG-FGRTGMTIARTFSAL-GARVFVGARSSADLAR----IT-EMGLIPFPLNKLEEKVAEIDIVINTI  217 (287)
T ss_pred             CCCCEEEEEc-ChHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----HH-HCCCeeecHHHHHHHhccCCEEEECC
Confidence            4689999999 688999999999998 7899999886432211    11 11222222222223446799999986

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.71  E-value=0.013  Score=54.09  Aligned_cols=72  Identities=22%  Similarity=0.283  Sum_probs=48.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCe-------------EEEEcCCCCCChhhhhhhhcCCceEEEeccccccc---
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNE-------------VIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---   94 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~-------------v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---   94 (190)
                      .+++|+|.| +|++|+..++.|.+..+.+             |.+.++..+.... +...  ..++..++.|+.|.+   
T Consensus       568 ~~~rIlVLG-AG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~-la~~--~~~~~~v~lDv~D~e~L~  643 (1042)
T PLN02819        568 KSQNVLILG-AGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKE-TVEG--IENAEAVQLDVSDSESLL  643 (1042)
T ss_pred             cCCcEEEEC-CCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHH-HHHh--cCCCceEEeecCCHHHHH
Confidence            468999999 6999999999999874433             6666664332222 1111  125667888887753   


Q ss_pred             --cCCcCEEEEccC
Q 029640           95 --LIEVDQIYHLAC  106 (190)
Q Consensus        95 --~~~~d~vi~~ag  106 (190)
                        ..++|+||.+..
T Consensus       644 ~~v~~~DaVIsalP  657 (1042)
T PLN02819        644 KYVSQVDVVISLLP  657 (1042)
T ss_pred             HhhcCCCEEEECCC
Confidence              246999999985

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=96.69  E-value=0.03  Score=43.10  Aligned_cols=101  Identities=17%  Similarity=0.179  Sum_probs=62.7

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEecccc
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIRHDVT   91 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~D~~   91 (190)
                      +|+|.| .|.+|.++++.|+..|-.++.+++.+.-...+.                      +.++-+..++..+..++.
T Consensus         1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~   79 (234)
T cd01484           1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG   79 (234)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            488999 899999999999999546788876653221111                      111112234555555553


Q ss_pred             c------cccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           92 E------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        92 ~------~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      +      ....++|+||.+..                 |...-..+-+.|...++.+|..++.+.+|
T Consensus        80 ~~~~~~~~f~~~~DvVi~a~D-----------------n~~aR~~ln~~c~~~~iplI~~g~~G~~G  129 (234)
T cd01484          80 PEQDFNDTFFEQFHIIVNALD-----------------NIIARRYVNGMLIFLIVPLIESGTEGFKG  129 (234)
T ss_pred             hhhhchHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEcccCCce
Confidence            2      12356899988752                 12223446677888888888877755444

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.68  E-value=0.012  Score=47.12  Aligned_cols=34  Identities=24%  Similarity=0.252  Sum_probs=30.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ++|.|+| .|.+|..++..|+++ |++|++.+|++.
T Consensus         3 ~~V~VIG-~G~mG~~iA~~la~~-G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIG-AGLIGRAWAIVFARA-GHEVRLWDADPA   36 (308)
T ss_pred             cEEEEEC-ccHHHHHHHHHHHHC-CCeeEEEeCCHH
Confidence            5799999 999999999999999 899999998754

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.66  E-value=0.057  Score=42.42  Aligned_cols=36  Identities=22%  Similarity=0.324  Sum_probs=30.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      +.+.+|+|.| .|.+|.++++.|+..+-.++++++.+
T Consensus        28 L~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         28 FADAHICVVG-IGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             hcCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            3678999999 89999999999999943688888655

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.61  E-value=0.0042  Score=51.79  Aligned_cols=77  Identities=13%  Similarity=0.127  Sum_probs=51.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      ..+++++|.| +|.+|+.+++.|...+...++++.|..+........ .+.  ......|-....+.+.|+||++.+...
T Consensus       179 l~~kkvlviG-aG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~-~~~--~~~~~~~~l~~~l~~aDiVI~aT~a~~  254 (414)
T PRK13940        179 ISSKNVLIIG-AGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSA-FRN--ASAHYLSELPQLIKKADIIIAAVNVLE  254 (414)
T ss_pred             ccCCEEEEEc-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH-hcC--CeEecHHHHHHHhccCCEEEECcCCCC
Confidence            4779999999 699999999999998446899999975443332222 211  222222322234567999999987544


Q ss_pred             C
Q 029640          110 P  110 (190)
Q Consensus       110 ~  110 (190)
                      +
T Consensus       255 ~  255 (414)
T PRK13940        255 Y  255 (414)
T ss_pred             e
Confidence            3

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=96.61  E-value=0.041  Score=43.98  Aligned_cols=106  Identities=14%  Similarity=0.110  Sum_probs=71.2

Q ss_pred             EEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC-----CceEEEeccccccccCCcCEEEEccCCCCC
Q 029640           37 VTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH-----PRFELIRHDVTEPLLIEVDQIYHLACPASP  110 (190)
Q Consensus        37 ItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~  110 (190)
                      |.| .|.+|..++..|+..+- .++.++++..+.......++.+.     ..+.....|  .+.+.+.|+||-.||... 
T Consensus         1 iIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~--~~~~~daDivVitag~~r-   76 (299)
T TIGR01771         1 IIG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGD--YSDCKDADLVVITAGAPQ-   76 (299)
T ss_pred             CCC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCC--HHHHCCCCEEEECCCCCC-
Confidence            456 69999999999988743 47888888665555444443221     122332222  245678999999998643 


Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                       ....+..+.++.|..-...+.+.+++++-  .+|.+|.
T Consensus        77 -k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN  114 (299)
T TIGR01771        77 -KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN  114 (299)
T ss_pred             -CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence             22345667889999999999888877653  6666665

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.60  E-value=0.029  Score=46.16  Aligned_cols=105  Identities=20%  Similarity=0.258  Sum_probs=64.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +...+|+|.| .|.+|..+++.|+..|-.++.+++.+.-...+.                      +..+-+..++..+.
T Consensus        39 l~~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~  117 (370)
T PRK05600         39 LHNARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR  117 (370)
T ss_pred             hcCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence            3568999999 899999999999999446888887653221111                      11111223444444


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ..+...    .+.++|+||.|...                 ...-..+-++|.+.++.+|+.+..+.+|
T Consensus       118 ~~i~~~~~~~~~~~~DlVid~~Dn-----------------~~~r~~in~~~~~~~iP~v~~~~~g~~G  169 (370)
T PRK05600        118 ERLTAENAVELLNGVDLVLDGSDS-----------------FATKFLVADAAEITGTPLVWGTVLRFHG  169 (370)
T ss_pred             eecCHHHHHHHHhCCCEEEECCCC-----------------HHHHHHHHHHHHHcCCCEEEEEEecCEE
Confidence            444321    24569999888731                 1112345578888888888877654333

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.58  E-value=0.007  Score=48.26  Aligned_cols=99  Identities=14%  Similarity=0.155  Sum_probs=61.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEE-eccccccccCCcCEEEEccCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELI-RHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      .|+++.|+|+.| ||.--++.-... |.+|+++++...+.++.+..+....-+... ..|.......-.|.++|++....
T Consensus       181 pG~~vgI~GlGG-LGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~a  258 (360)
T KOG0023|consen  181 PGKWVGIVGLGG-LGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNLA  258 (360)
T ss_pred             CCcEEEEecCcc-cchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeecc
Confidence            789999999888 999888888888 999999999877777776655432222222 22332222233566666553111


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEec
Q 029640          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS  147 (190)
                          +..           ...++++++..+ ++|+++-
T Consensus       259 ----~~~-----------~~~~~~~lk~~G-t~V~vg~  280 (360)
T KOG0023|consen  259 ----EHA-----------LEPLLGLLKVNG-TLVLVGL  280 (360)
T ss_pred             ----ccc-----------hHHHHHHhhcCC-EEEEEeC
Confidence                111           123555666544 8888874

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.56  E-value=0.0049  Score=47.13  Aligned_cols=69  Identities=20%  Similarity=0.327  Sum_probs=51.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------CCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------~~~d~vi~~ag  106 (190)
                      |+++|.| .|-+|+.+++.|.++ |++|.++.++.+.......   .....+.+.+|-++...      .++|+++-.-+
T Consensus         1 m~iiIiG-~G~vG~~va~~L~~~-g~~Vv~Id~d~~~~~~~~~---~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~   75 (225)
T COG0569           1 MKIIIIG-AGRVGRSVARELSEE-GHNVVLIDRDEERVEEFLA---DELDTHVVIGDATDEDVLEEAGIDDADAVVAATG   75 (225)
T ss_pred             CEEEEEC-CcHHHHHHHHHHHhC-CCceEEEEcCHHHHHHHhh---hhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence            5788888 899999999999999 8999999886544333221   12467888899988643      45888887664

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.55  E-value=0.024  Score=48.14  Aligned_cols=72  Identities=24%  Similarity=0.185  Sum_probs=48.8

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      .+++|+|.| .|..|..+++.|++. |..|++.+++.....    ++....++.+...+-......++|.||...|+.
T Consensus        14 ~~~~v~v~G-~G~sG~a~a~~L~~~-G~~V~~~D~~~~~~~----~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~   85 (473)
T PRK00141         14 LSGRVLVAG-AGVSGRGIAAMLSEL-GCDVVVADDNETARH----KLIEVTGVADISTAEASDQLDSFSLVVTSPGWR   85 (473)
T ss_pred             cCCeEEEEc-cCHHHHHHHHHHHHC-CCEEEEECCChHHHH----HHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCC
Confidence            678899999 889999999999999 789999887543221    111122455544322222345689999998865

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=96.54  E-value=0.017  Score=45.21  Aligned_cols=115  Identities=19%  Similarity=0.083  Sum_probs=69.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCC-CCCChhhhhhhhcCCceEEEe-ccccccccCCcCEEEEccCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNY-FTGSKDNLRKWIGHPRFELIR-HDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~d~vi~~ag~  107 (190)
                      .+-+|.|.|+.|.||+.|.-.|..... .+..+.+-. -+.....+-++-....+..+. .|-....+.+.|+|+--||.
T Consensus        27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGV  106 (345)
T KOG1494|consen   27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPAGV  106 (345)
T ss_pred             CcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecCCC
Confidence            567899999999999999877665522 122222211 112222222221122333322 22223345679999999985


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEec
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS  147 (190)
                      ..  ......++.|.+|..-...+..++.+.. . .+.++|.
T Consensus       107 PR--KPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN  146 (345)
T KOG1494|consen  107 PR--KPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISN  146 (345)
T ss_pred             CC--CCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence            43  3345567889999999999988887764 3 5666765

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.54  E-value=0.0076  Score=43.99  Aligned_cols=36  Identities=19%  Similarity=0.388  Sum_probs=31.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      +.+++++|.|+++.+|..+++.|.++ +.+|.++.|.
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~   77 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK   77 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence            58899999998777899999999998 7788888875

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08223 hypothetical protein; Validated

Probab=96.52  E-value=0.068  Score=42.34  Aligned_cols=104  Identities=13%  Similarity=0.052  Sum_probs=63.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +...+|+|.| .|.+|..+++.|+..|-.++.+++.+.-...+.                      +.++-+..++..+.
T Consensus        25 L~~s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~  103 (287)
T PRK08223         25 LRNSRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP  103 (287)
T ss_pred             HhcCCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            3678999999 899999999999999546787776653222111                      11111223455554


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      ..++.+    .+.++|+||.+.-         ++      +...-..+-++|.++++.+|+.+...
T Consensus       104 ~~l~~~n~~~ll~~~DlVvD~~D---------~~------~~~~r~~ln~~c~~~~iP~V~~~~~g  154 (287)
T PRK08223        104 EGIGKENADAFLDGVDVYVDGLD---------FF------EFDARRLVFAACQQRGIPALTAAPLG  154 (287)
T ss_pred             cccCccCHHHHHhCCCEEEECCC---------CC------cHHHHHHHHHHHHHcCCCEEEEeccC
Confidence            444432    2346898886652         11      01112456688999998888876533

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.51  E-value=0.0081  Score=47.49  Aligned_cols=108  Identities=16%  Similarity=0.080  Sum_probs=65.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCC-ceEEEeccccccccC-CcCEEEEccCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP-RFELIRHDVTEPLLI-EVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~-~~d~vi~~ag~~  108 (190)
                      ++++++|.| +|..+++++..|++.+-.+++++.|..+........+.... .+..  .+..+.... ..|+|||+-...
T Consensus       125 ~~~~vlilG-AGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~--~~~~~~~~~~~~dliINaTp~G  201 (283)
T COG0169         125 TGKRVLILG-AGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEA--AALADLEGLEEADLLINATPVG  201 (283)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccccc--ccccccccccccCEEEECCCCC
Confidence            578999999 78899999999999943789999997665444333322111 1112  223222323 589999997544


Q ss_pred             CCcccccC--ch-------hHHHHHHH-HHHHHHHHHHHcCCe
Q 029640          109 SPIFYKYN--PV-------KTIKTNVI-GTLNMLGLAKRVGAR  141 (190)
Q Consensus       109 ~~~~~~~~--~~-------~~~~~n~~-~~~~l~~~~~~~~~~  141 (190)
                      .......+  +.       -.+++.+. ..-.+++.|++++++
T Consensus       202 m~~~~~~~~~~~~~l~~~~~v~D~vY~P~~TplL~~A~~~G~~  244 (283)
T COG0169         202 MAGPEGDSPVPAELLPKGAIVYDVVYNPLETPLLREARAQGAK  244 (283)
T ss_pred             CCCCCCCCCCcHHhcCcCCEEEEeccCCCCCHHHHHHHHcCCe
Confidence            32210010  01       12333443 234678899998877

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.50  E-value=0.032  Score=46.85  Aligned_cols=75  Identities=19%  Similarity=0.096  Sum_probs=54.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      +|+|+|.| -|--|..+++.|.+. |..|++.+.++.. ............+....+...+.....+|.||-+.|+..
T Consensus         7 ~~kv~V~G-LG~sG~a~a~~L~~~-G~~v~v~D~~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~   81 (448)
T COG0771           7 GKKVLVLG-LGKSGLAAARFLLKL-GAEVTVSDDRPAP-EGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPP   81 (448)
T ss_pred             CCEEEEEe-cccccHHHHHHHHHC-CCeEEEEcCCCCc-cchhhhhhhccCceeecCccchhccccCCEEEECCCCCC
Confidence            89999999 899999999999999 8999999866554 211111112345566555555555677999999998654

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.49  E-value=0.049  Score=43.44  Aligned_cols=107  Identities=13%  Similarity=0.079  Sum_probs=65.3

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcC-----CceEEEe-ccccccccCCcCEEEEccCC
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGH-----PRFELIR-HDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~-~D~~~~~~~~~d~vi~~ag~  107 (190)
                      |.|+|+ |.+|..++..|+.+ +. +|.+++++.+.......++...     ....+.. .|  ..++.+.|+||.++|.
T Consensus         1 I~IIGa-G~vG~~ia~~la~~-~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d--~~~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALK-ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND--YEDIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhC-CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC--HHHhCCCCEEEEecCC
Confidence            468996 99999999999987 43 9999988755332111111110     1122221 33  2346789999999985


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ...  ......+.+..|+.....+++...+...  .+|.+|.
T Consensus        77 p~~--~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN  116 (300)
T cd01339          77 PRK--PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN  116 (300)
T ss_pred             CCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            432  2233345566777777777777766543  4555554

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK07411 hypothetical protein; Validated

Probab=96.47  E-value=0.04  Score=45.69  Aligned_cols=105  Identities=14%  Similarity=0.060  Sum_probs=65.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +...+|+|.| .|.+|..+++.|+..|-.++.+++.+.-...+.                      +..+-+..++..+.
T Consensus        36 L~~~~VlivG-~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~  114 (390)
T PRK07411         36 LKAASVLCIG-TGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYE  114 (390)
T ss_pred             HhcCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEe
Confidence            3668999999 899999999999999546788776653222111                      11111223455555


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ..+...    .+.++|+||.+...         .+        .-..+-++|.+.++.+|+.+..+-+|
T Consensus       115 ~~~~~~~~~~~~~~~D~Vvd~~d~---------~~--------~r~~ln~~~~~~~~p~v~~~~~g~~g  166 (390)
T PRK07411        115 TRLSSENALDILAPYDVVVDGTDN---------FP--------TRYLVNDACVLLNKPNVYGSIFRFEG  166 (390)
T ss_pred             cccCHHhHHHHHhCCCEEEECCCC---------HH--------HHHHHHHHHHHcCCCEEEEEEccCEE
Confidence            545432    23569999988731         11        11235578888888888877655444

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.46  E-value=0.078  Score=38.86  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=27.4

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      +|+|.| .|.+|..+++.|+..+-.++.+++.+.
T Consensus         1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            488999 799999999999999435788887764

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.45  E-value=0.017  Score=46.45  Aligned_cols=97  Identities=15%  Similarity=0.213  Sum_probs=53.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhc-CCCe-EEE--EcCCCCCChhhhhhhhcCCceEEEeccccc-cccCCcCEEEEccC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMEN-EKNE-VIV--VDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PLLIEVDQIYHLAC  106 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~-~~~~-v~~--~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~d~vi~~ag  106 (190)
                      +++|.|.|+||.+|+.+++.|.++ .... +.+  ..|+.....-.+..    ..+... -+..+ ....++|++|.++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~----~~~~v~-~~~~~~~~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGG----KSIGVP-EDAADEFVFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccC----ccccCc-cccccccccccCCEEEEeCc
Confidence            368999999999999999999995 2222 222  23322222111111    011111 11111 23447999999996


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCC
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD  153 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~  153 (190)
                      ...                  +..+...+.+.|  .+.++.++.|..
T Consensus        76 ~~~------------------s~~~~p~~~~~G--~~VIdnsSa~Rm  102 (334)
T COG0136          76 GSV------------------SKEVEPKAAEAG--CVVIDNSSAFRM  102 (334)
T ss_pred             hHH------------------HHHHHHHHHHcC--CEEEeCCccccc
Confidence            321                  244666777777  444555555543

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.43  E-value=0.034  Score=45.29  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=27.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      +.+|.|.|. |.||+.+++.+.++.+.++..+..
T Consensus         1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d   33 (341)
T PRK04207          1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAK   33 (341)
T ss_pred             CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEEC
Confidence            368999997 999999999999876677777654

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=96.42  E-value=0.0057  Score=49.85  Aligned_cols=75  Identities=16%  Similarity=0.163  Sum_probs=45.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc----ccCCcCEEEEc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP----LLIEVDQIYHL  104 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~----~~~~~d~vi~~  104 (190)
                      .+++.|||.||+|.+|+++++.+... + ..|.+.++  ....+..+.+....-+++-..|+.+.    ...++|+|+.|
T Consensus       156 ~~g~~vLv~ggsggVG~~aiQlAk~~-~~~~v~t~~s--~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~  232 (347)
T KOG1198|consen  156 SKGKSVLVLGGSGGVGTAAIQLAKHA-GAIKVVTACS--KEKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDC  232 (347)
T ss_pred             CCCCeEEEEeCCcHHHHHHHHHHHhc-CCcEEEEEcc--cchHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEEC
Confidence            46789999999999999999998888 5 55555544  22233333332111122211122211    13369999999


Q ss_pred             cCC
Q 029640          105 ACP  107 (190)
Q Consensus       105 ag~  107 (190)
                      .|.
T Consensus       233 vg~  235 (347)
T KOG1198|consen  233 VGG  235 (347)
T ss_pred             CCC
Confidence            985

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.42  E-value=0.0059  Score=48.65  Aligned_cols=69  Identities=16%  Similarity=0.109  Sum_probs=46.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.+++++|+| .|.+|+.++..|... |.+|++.+|+..... ...    .....++..+-......+.|+||++.
T Consensus       150 l~g~kvlViG-~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~-~~~----~~G~~~~~~~~l~~~l~~aDiVI~t~  218 (296)
T PRK08306        150 IHGSNVLVLG-FGRTGMTLARTLKAL-GANVTVGARKSAHLA-RIT----EMGLSPFHLSELAEEVGKIDIIFNTI  218 (296)
T ss_pred             CCCCEEEEEC-CcHHHHHHHHHHHHC-CCEEEEEECCHHHHH-HHH----HcCCeeecHHHHHHHhCCCCEEEECC
Confidence            3679999999 588999999999998 789999988643211 111    11233332222223346799999986

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.39  E-value=0.021  Score=48.04  Aligned_cols=67  Identities=22%  Similarity=0.377  Sum_probs=49.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------cCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~~d~vi~~a  105 (190)
                      |+++|+|+ |.+|+.+++.|.++ +++|.+++++++.    ...+.....+.++.+|..+..      ..++|.||.+.
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~-g~~v~vid~~~~~----~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~   73 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGE-NNDVTVIDTDEER----LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT   73 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhC-CCcEEEEECCHHH----HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence            57999995 99999999999998 8899999875443    322222236788888887652      34688877765

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.36  E-value=0.0064  Score=48.78  Aligned_cols=73  Identities=19%  Similarity=0.276  Sum_probs=48.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      ..+++|+|.| +|-+|..+++.|...+..+|+++.|+.+........+ +   ......+-......+.|+||.+.+.
T Consensus       176 l~~~~V~ViG-aG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g---~~~~~~~~~~~~l~~aDvVi~at~~  248 (311)
T cd05213         176 LKGKKVLVIG-AGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-G---GNAVPLDELLELLNEADVVISATGA  248 (311)
T ss_pred             ccCCEEEEEC-cHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-C---CeEEeHHHHHHHHhcCCEEEECCCC
Confidence            3689999999 5999999999999875578999988654433332222 1   1222222112234568999999864

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=96.32  E-value=0.02  Score=52.76  Aligned_cols=104  Identities=11%  Similarity=0.096  Sum_probs=68.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh----------------------hhhhhhhcCCceEEEec
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIRH   88 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~~   88 (190)
                      ...+|+|.| .|.+|.++++.|+..|-..+.+++...-...                      ..+.++-+...+.....
T Consensus        23 ~~s~VLIiG-~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~  101 (1008)
T TIGR01408        23 AKSNVLISG-MGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSV  101 (1008)
T ss_pred             hhCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEecc
Confidence            557899999 6889999999999995467887765422111                      11122212235555555


Q ss_pred             cccccccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--CeEEEEecceecC
Q 029640           89 DVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYG  152 (190)
Q Consensus        89 D~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~i~vSS~~~~~  152 (190)
                      ++..+.+.++|+||.+-.         +..        ....+-++|++++  +.+|+.++.+.||
T Consensus       102 ~l~~e~l~~fdvVV~t~~---------~~~--------~~~~in~~cr~~~~~I~fI~~~~~G~~G  150 (1008)
T TIGR01408       102 PFNEEFLDKFQCVVLTEM---------SLP--------LQKEINDFCHSQCPPIAFISADVRGLFG  150 (1008)
T ss_pred             cCCHHHHcCCCEEEECCC---------CHH--------HHHHHHHHHHHcCCCeEEEEEeecceEE
Confidence            565555668999988642         111        1235668999998  6799888877666

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.27  E-value=0.012  Score=50.66  Aligned_cols=74  Identities=15%  Similarity=0.125  Sum_probs=46.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEec-cccccccCCcCEEEEccCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +.+++++|+|+ |.+|++++..|++. |.+|.++.|+.+........+ ..   ..+.. |+.+......|+|||+....
T Consensus       377 ~~~k~vlIlGa-GGagrAia~~L~~~-G~~V~i~nR~~e~a~~la~~l-~~---~~~~~~~~~~~~~~~~diiINtT~vG  450 (529)
T PLN02520        377 LAGKLFVVIGA-GGAGKALAYGAKEK-GARVVIANRTYERAKELADAV-GG---QALTLADLENFHPEEGMILANTTSVG  450 (529)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHh-CC---ceeeHhHhhhhccccCeEEEecccCC
Confidence            36789999996 89999999999999 679999888644333322222 11   11111 11111122468888887644


Q ss_pred             C
Q 029640          109 S  109 (190)
Q Consensus       109 ~  109 (190)
                      .
T Consensus       451 m  451 (529)
T PLN02520        451 M  451 (529)
T ss_pred             C
Confidence            3

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.26  E-value=0.13  Score=34.12  Aligned_cols=64  Identities=22%  Similarity=0.305  Sum_probs=44.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +++++|+|.| +|-+|..-++.|++. |.+|+++....    ....     ..+.+..-+.. ..+.+.+.||-+-
T Consensus         5 l~~~~vlVvG-gG~va~~k~~~Ll~~-gA~v~vis~~~----~~~~-----~~i~~~~~~~~-~~l~~~~lV~~at   68 (103)
T PF13241_consen    5 LKGKRVLVVG-GGPVAARKARLLLEA-GAKVTVISPEI----EFSE-----GLIQLIRREFE-EDLDGADLVFAAT   68 (103)
T ss_dssp             -TT-EEEEEE-ESHHHHHHHHHHCCC-TBEEEEEESSE----HHHH-----TSCEEEESS-G-GGCTTESEEEE-S
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEECCch----hhhh-----hHHHHHhhhHH-HHHhhheEEEecC
Confidence            5789999999 699999999999999 89999998754    1111     35566655553 5566788777544

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=96.24  E-value=0.0051  Score=49.72  Aligned_cols=74  Identities=20%  Similarity=0.167  Sum_probs=46.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc----c-CCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----L-IEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~----~-~~~d~vi~~a  105 (190)
                      .+.+|||+||+|.+|...++.+...+...|.+..+ +++.. .+..+....-+.+..-|+.+..    . .++|+|+...
T Consensus       142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s-~~k~~-~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v  219 (326)
T COG0604         142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS-SEKLE-LLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV  219 (326)
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecC-HHHHH-HHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence            47999999999999999999999993344444444 33322 3333332223333333433321    1 2599999998


Q ss_pred             C
Q 029640          106 C  106 (190)
Q Consensus       106 g  106 (190)
                      |
T Consensus       220 G  220 (326)
T COG0604         220 G  220 (326)
T ss_pred             C
Confidence            6

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.12  E-value=0.0098  Score=50.01  Aligned_cols=66  Identities=24%  Similarity=0.254  Sum_probs=43.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |+|.|+||.|.+|.++++.|.+. |++|.+.+|+.+........    .++.. ..|. .....++|+||-+.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~-G~~V~v~~r~~~~~~~~a~~----~gv~~-~~~~-~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEK-GFEVIVTGRDPKKGKEVAKE----LGVEY-ANDN-IDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHC-CCEEEEEECChHHHHHHHHH----cCCee-ccCH-HHHhccCCEEEEec
Confidence            57999999999999999999998 78999998864332221111    12221 1121 12345689988876

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.12  E-value=0.018  Score=45.56  Aligned_cols=37  Identities=14%  Similarity=0.260  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      .+.|++++|+|+++.+|+.++..|.++ +..|+++.++
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~-gatVtv~~s~  191 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQK-NASVTILHSR  191 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHC-CCeEEEEeCC
Confidence            468999999999999999999999998 7888888664

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.11  E-value=0.096  Score=44.08  Aligned_cols=74  Identities=19%  Similarity=0.150  Sum_probs=49.8

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccccCCcCEEEEccCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      .+++++|+|. |.+|..+++.|.++ |+.|.+.+......  ....+.. ..++.+......+....++|.||...|+.
T Consensus         4 ~~~~~~v~G~-g~~G~~~a~~l~~~-g~~v~~~d~~~~~~--~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~   78 (445)
T PRK04308          4 QNKKILVAGL-GGTGISMIAYLRKN-GAEVAAYDAELKPE--RVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGIS   78 (445)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEeCCCCch--hHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence            5689999995 68999999999999 88999987654421  1112211 12455554443333345789999998864

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.11  E-value=0.044  Score=46.76  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=49.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      ..+++|+|.| .|-.|...++.|... |.+|++.+++...    ...+. ..++.++..+-....+.++|+||...|+..
T Consensus        10 ~~~~~v~V~G-~G~sG~aa~~~L~~~-G~~v~~~D~~~~~----~~~l~-~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~   82 (488)
T PRK03369         10 LPGAPVLVAG-AGVTGRAVLAALTRF-GARPTVCDDDPDA----LRPHA-ERGVATVSTSDAVQQIADYALVVTSPGFRP   82 (488)
T ss_pred             cCCCeEEEEc-CCHHHHHHHHHHHHC-CCEEEEEcCCHHH----HHHHH-hCCCEEEcCcchHhHhhcCCEEEECCCCCC
Confidence            3678999999 889999999988888 8999998864322    22221 124445433322233456899999998653

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.07  E-value=0.09  Score=44.66  Aligned_cols=75  Identities=11%  Similarity=0.019  Sum_probs=49.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      .+++|+|.| -|--|...++.|.+. |.+|++.+.+..........+..  .+..+...-....+.++|.||...|+..
T Consensus         7 ~~~~v~v~G-~G~sG~~~~~~l~~~-g~~v~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~d~vV~SpgI~~   81 (468)
T PRK04690          7 EGRRVALWG-WGREGRAAYRALRAH-LPAQALTLFCNAVEAREVGALAD--AALLVETEASAQRLAAFDVVVKSPGISP   81 (468)
T ss_pred             CCCEEEEEc-cchhhHHHHHHHHHc-CCEEEEEcCCCcccchHHHHHhh--cCEEEeCCCChHHccCCCEEEECCCCCC
Confidence            578999999 588999999999999 89999988544322222222221  2233333222233457899999988653

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.04  E-value=0.0043  Score=45.65  Aligned_cols=38  Identities=21%  Similarity=0.154  Sum_probs=33.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      +.+++|.|.| .|-||+.+++.|..- |.+|.+.+|....
T Consensus        34 l~g~tvgIiG-~G~IG~~vA~~l~~f-G~~V~~~d~~~~~   71 (178)
T PF02826_consen   34 LRGKTVGIIG-YGRIGRAVARRLKAF-GMRVIGYDRSPKP   71 (178)
T ss_dssp             STTSEEEEES-TSHHHHHHHHHHHHT-T-EEEEEESSCHH
T ss_pred             cCCCEEEEEE-EcCCcCeEeeeeecC-CceeEEecccCCh
Confidence            4789999999 899999999999998 8999999986553

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.04  E-value=0.037  Score=44.37  Aligned_cols=104  Identities=11%  Similarity=0.073  Sum_probs=60.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCC---eEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKN---EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      .+|.| |+||-+|+.+.+.|.++ ..   ++.++.....-....+.  +  .+-.+..-++.+..+.++|++|. +|.. 
T Consensus         4 ~~iAi-GATg~VG~~~l~~Leer-~fpv~~l~l~~s~~~s~gk~i~--f--~g~~~~V~~l~~~~f~~vDia~f-ag~~-   75 (322)
T PRK06901          4 LNIAI-AAEFELSEKLLEALEQS-DLEIEQISIVEIEPFGEEQGIR--F--NNKAVEQIAPEEVEWADFNYVFF-AGKM-   75 (322)
T ss_pred             ceEEE-ecCcHHHHHHHHHHHhc-CCchhheeecccccccCCCEEE--E--CCEEEEEEECCccCcccCCEEEE-cCHH-
Confidence            57999 99999999999999888 43   34443322011111111  1  12233334666667789999998 7521 


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCC
Q 029640          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDE  161 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e  161 (190)
                                       ........+.+.|+.+|=-||..=+.++-+..+.|
T Consensus        76 -----------------~s~~~ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPE  110 (322)
T PRK06901         76 -----------------AQAEHLAQAAEAGCIVIDLYGICAALANVPVVVPS  110 (322)
T ss_pred             -----------------HHHHHHHHHHHCCCEEEECChHhhCCCCCCeeccc
Confidence                             12345556777787777666655444433333333

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.01  E-value=0.012  Score=49.24  Aligned_cols=75  Identities=16%  Similarity=0.294  Sum_probs=48.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      ..+++++|.| +|.+|..+++.|...+..+|++..|+.+........+    +...+..+-......+.|+||.+.+...
T Consensus       178 l~~~~VlViG-aG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~----g~~~i~~~~l~~~l~~aDvVi~aT~s~~  252 (417)
T TIGR01035       178 LKGKKALLIG-AGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKEL----GGEAVKFEDLEEYLAEADIVISSTGAPH  252 (417)
T ss_pred             ccCCEEEEEC-ChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc----CCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence            4679999999 5999999999999983378999988654332222221    1122222211233457999999976443

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.00  E-value=0.051  Score=34.86  Aligned_cols=35  Identities=20%  Similarity=0.421  Sum_probs=29.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      +.+++++|.|. |.+|+.++..|.+.++.++.+.+|
T Consensus        21 ~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46789999995 999999999999985567777655

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PLN00203 glutamyl-tRNA reductase

Probab=95.95  E-value=0.016  Score=49.70  Aligned_cols=79  Identities=19%  Similarity=0.269  Sum_probs=50.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      +.+++|+|.|+ |-+|..+++.|...+-.+|+++.|+.+........+ +...+.+...+-......+.|+||.+.+...
T Consensus       264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~-~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~  341 (519)
T PLN00203        264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF-PDVEIIYKPLDEMLACAAEADVVFTSTSSET  341 (519)
T ss_pred             CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh-CCCceEeecHhhHHHHHhcCCEEEEccCCCC
Confidence            35799999995 999999999999983357999988655443332222 1112222222222234567999999876444


Q ss_pred             C
Q 029640          110 P  110 (190)
Q Consensus       110 ~  110 (190)
                      +
T Consensus       342 p  342 (519)
T PLN00203        342 P  342 (519)
T ss_pred             C
Confidence            3

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.95  E-value=0.015  Score=46.00  Aligned_cols=77  Identities=13%  Similarity=0.103  Sum_probs=47.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEEeccccc--cccCCcCEEEEccCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTE--PLLIEVDQIYHLACP  107 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~--~~~~~~d~vi~~ag~  107 (190)
                      .+++++|.| +|..|++++-.|++.+-.+++++.|..++.......+... ........+..+  .....+|+|||+-..
T Consensus       126 ~~k~vlilG-aGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~  204 (283)
T PRK14027        126 KLDSVVQVG-AGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM  204 (283)
T ss_pred             CCCeEEEEC-CcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence            568999999 6999999999999984468999988755444333222111 110011123221  123468999998754


Q ss_pred             C
Q 029640          108 A  108 (190)
Q Consensus       108 ~  108 (190)
                      .
T Consensus       205 G  205 (283)
T PRK14027        205 G  205 (283)
T ss_pred             C
Confidence            3

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.94  E-value=0.039  Score=43.86  Aligned_cols=38  Identities=8%  Similarity=0.045  Sum_probs=30.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ..+++++|.|+ |..+++++..|+..+-.++.++.|+.+
T Consensus       122 ~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        122 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            36789999995 666999999999984468999999753

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=95.90  E-value=0.12  Score=40.49  Aligned_cols=32  Identities=22%  Similarity=0.455  Sum_probs=27.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~   64 (190)
                      ++|.|.|++|.+|+.+++.+.+..+.++....
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~   33 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAF   33 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            68999999999999999999987566666543

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=95.85  E-value=0.076  Score=41.65  Aligned_cols=71  Identities=20%  Similarity=0.178  Sum_probs=41.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      |++|.|.| .|.||+.+++.|.+..+.++..+...... .......... .+.. ..|+.+. ..++|+|+-|++.
T Consensus         1 m~rVgIiG-~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~~~~-~~~~-~~d~~~l-~~~~DvVve~t~~   71 (265)
T PRK13303          1 MMKVAMIG-FGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRALGE-AVRV-VSSVDAL-PQRPDLVVECAGH   71 (265)
T ss_pred             CcEEEEEC-CCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhhhcc-CCee-eCCHHHh-ccCCCEEEECCCH
Confidence            36899999 59999999999988745555554422221 1111111111 2222 2344333 4568999999864

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.84  E-value=0.082  Score=40.36  Aligned_cols=70  Identities=10%  Similarity=0.161  Sum_probs=53.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      ++++|+|.| +|-++..=++.|++. +.+|+++...   ....+..+.....+.+.+-+.....+.+.+.||-+.
T Consensus        24 ~~~~VLVVG-GG~VA~RK~~~Ll~~-gA~VtVVap~---i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaAT   93 (223)
T PRK05562         24 NKIKVLIIG-GGKAAFIKGKTFLKK-GCYVYILSKK---FSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIAT   93 (223)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEcCC---CCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECC
Confidence            578999999 799999999999998 8899998643   223344455566889988777666667777777664

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.84  E-value=0.017  Score=37.64  Aligned_cols=65  Identities=23%  Similarity=0.266  Sum_probs=40.5

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCC---CeEEEE-cCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEK---NEVIVV-DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~---~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |+.|+| +|-+|..+++.|++. +   ++|.+. .|+++.......    .-.+.....|.. +.....|+||.+.
T Consensus         1 kI~iIG-~G~mg~al~~~l~~~-g~~~~~v~~~~~r~~~~~~~~~~----~~~~~~~~~~~~-~~~~~advvilav   69 (96)
T PF03807_consen    1 KIGIIG-AGNMGSALARGLLAS-GIKPHEVIIVSSRSPEKAAELAK----EYGVQATADDNE-EAAQEADVVILAV   69 (96)
T ss_dssp             EEEEES-TSHHHHHHHHHHHHT-TS-GGEEEEEEESSHHHHHHHHH----HCTTEEESEEHH-HHHHHTSEEEE-S
T ss_pred             CEEEEC-CCHHHHHHHHHHHHC-CCCceeEEeeccCcHHHHHHHHH----hhccccccCChH-HhhccCCEEEEEE
Confidence            577886 999999999999999 7   888855 664443322222    112333322222 2334689999887

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.83  E-value=0.1  Score=39.53  Aligned_cols=70  Identities=19%  Similarity=0.267  Sum_probs=50.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~  104 (190)
                      +.+++|+|.| +|-+|..=++.|++. |.+|+++....   ...+..+....++.++..+.......+.+.||-+
T Consensus        10 l~~k~VlvvG-gG~va~rKa~~ll~~-ga~v~Vvs~~~---~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaA   79 (210)
T COG1648          10 LEGKKVLVVG-GGSVALRKARLLLKA-GADVTVVSPEF---EPELKALIEEGKIKWIEREFDAEDLDDAFLVIAA   79 (210)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHhc-CCEEEEEcCCc---cHHHHHHHHhcCcchhhcccChhhhcCceEEEEe
Confidence            4789999999 899999999999999 88999987654   4555666666677777644433344444544433

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.80  E-value=0.018  Score=48.28  Aligned_cols=75  Identities=23%  Similarity=0.302  Sum_probs=47.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      ..+++++|+| +|-+|..+++.|...+..+|++..|+..........+ +   ...+..+-......+.|+||.+.+...
T Consensus       180 ~~~~~vlViG-aG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~-g---~~~~~~~~~~~~l~~aDvVI~aT~s~~  254 (423)
T PRK00045        180 LSGKKVLVIG-AGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF-G---GEAIPLDELPEALAEADIVISSTGAPH  254 (423)
T ss_pred             ccCCEEEEEC-chHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc-C---CcEeeHHHHHHHhccCCEEEECCCCCC
Confidence            4679999999 6999999999999883248888888654433222221 1   122221111223457899999986443

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=95.79  E-value=0.19  Score=42.18  Aligned_cols=101  Identities=16%  Similarity=0.151  Sum_probs=62.2

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCC-----CeEEEEcCCCCCChhhh----------------------hhhhcCCceEEE
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEK-----NEVIVVDNYFTGSKDNL----------------------RKWIGHPRFELI   86 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~-----~~v~~~~r~~~~~~~~~----------------------~~~~~~~~~~~~   86 (190)
                      +|+|.| .|.||.++++.|+..|-     .++.+++.+.-...+.-                      ..+-+..++..+
T Consensus         1 kVlvVG-aGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~   79 (435)
T cd01490           1 KVFLVG-AGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL   79 (435)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence            588999 89999999999999943     47888766532221111                      111112344555


Q ss_pred             eccccc--------cccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           87 RHDVTE--------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        87 ~~D~~~--------~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ...+..        .-+.++|+||++.-                 |..+-..+-+.|...++.+|..++.+.+|
T Consensus        80 ~~~v~~~~~~~~~~~f~~~~DvVi~alD-----------------n~~aR~~vn~~C~~~~iPli~~gt~G~~G  136 (435)
T cd01490          80 QNRVGPETEHIFNDEFWEKLDGVANALD-----------------NVDARMYVDRRCVYYRKPLLESGTLGTKG  136 (435)
T ss_pred             ecccChhhhhhhhHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHhCCCEEEEeccccee
Confidence            443321        11346888888752                 12222356678888888888888766555

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=95.76  E-value=0.16  Score=42.66  Aligned_cols=106  Identities=10%  Similarity=0.117  Sum_probs=64.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh----------------------hhhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~   87 (190)
                      +...+|+|.| .|.+|.++++.|+..|=..+++++...-...+                      .+.++-+...+.++.
T Consensus        18 L~~s~VlliG-~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~   96 (425)
T cd01493          18 LESAHVCLLN-ATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVE   96 (425)
T ss_pred             HhhCeEEEEc-CcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence            3668999999 66699999999999943677777654221111                      011111123344444


Q ss_pred             ccccc------cccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCC
Q 029640           88 HDVTE------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD  153 (190)
Q Consensus        88 ~D~~~------~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~  153 (190)
                      -++.+      .-+.++|+||.+-.         +.        .....+.+.|.+.++.+|+++|.+.||.
T Consensus        97 e~~~~ll~~~~~f~~~fdiVI~t~~---------~~--------~~~~~L~~~c~~~~iPlI~~~s~G~~G~  151 (425)
T cd01493          97 ESPEALLDNDPSFFSQFTVVIATNL---------PE--------STLLRLADVLWSANIPLLYVRSYGLYGY  151 (425)
T ss_pred             cccchhhhhHHHHhcCCCEEEECCC---------CH--------HHHHHHHHHHHHcCCCEEEEecccCEEE
Confidence            33321      11346788875421         11        1123466888999999999999888773

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=95.75  E-value=0.049  Score=39.42  Aligned_cols=39  Identities=15%  Similarity=0.265  Sum_probs=30.2

Q ss_pred             cccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        28 ~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ..+.||+++|.|.+..+|+.++..|.++ +..|.+.....
T Consensus        32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~-~atVt~~h~~T   70 (160)
T PF02882_consen   32 IDLEGKKVVVVGRSNIVGKPLAMLLLNK-GATVTICHSKT   70 (160)
T ss_dssp             -STTT-EEEEE-TTTTTHHHHHHHHHHT-T-EEEEE-TTS
T ss_pred             CCCCCCEEEEECCcCCCChHHHHHHHhC-CCeEEeccCCC
Confidence            3468999999999999999999999999 88888876543

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.74  E-value=0.11  Score=44.06  Aligned_cols=72  Identities=15%  Similarity=0.092  Sum_probs=48.4

Q ss_pred             CCCEEEEEcccchHHHH-HHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           31 SNMRILVTGGAGFIGSH-LVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~-l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      .+++|+|.| -|..|.. +++.|.++ |++|++.+.+....   ...+. ..++.+.... ....+.++|.||...|+..
T Consensus         6 ~~~~v~viG-~G~sG~s~~a~~L~~~-G~~V~~~D~~~~~~---~~~l~-~~gi~~~~~~-~~~~~~~~d~vv~spgi~~   78 (461)
T PRK00421          6 RIKRIHFVG-IGGIGMSGLAEVLLNL-GYKVSGSDLKESAV---TQRLL-ELGAIIFIGH-DAENIKDADVVVYSSAIPD   78 (461)
T ss_pred             CCCEEEEEE-EchhhHHHHHHHHHhC-CCeEEEECCCCChH---HHHHH-HCCCEEeCCC-CHHHCCCCCEEEECCCCCC
Confidence            568899999 6679999 79999998 89999998765432   22222 2245554322 2233447899999988643

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.72  E-value=0.038  Score=34.79  Aligned_cols=35  Identities=34%  Similarity=0.510  Sum_probs=31.0

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      +++|.| +|++|-.++..|... +.+|+++.|.+...
T Consensus         1 ~vvViG-gG~ig~E~A~~l~~~-g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIG-GGFIGIELAEALAEL-GKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEES-SSHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHh-CcEEEEEeccchhh
Confidence            578888 899999999999998 89999998877655

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=95.71  E-value=0.0076  Score=43.55  Aligned_cols=72  Identities=19%  Similarity=0.237  Sum_probs=42.0

Q ss_pred             ccccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        27 ~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      ..++.+|+++|+| -|++|+.+++.|... |..|++...++...   ++...  ..+...  + .++.....|++|.+-|
T Consensus        18 ~~~l~Gk~vvV~G-YG~vG~g~A~~lr~~-Ga~V~V~e~DPi~a---lqA~~--dGf~v~--~-~~~a~~~adi~vtaTG   87 (162)
T PF00670_consen   18 NLMLAGKRVVVIG-YGKVGKGIARALRGL-GARVTVTEIDPIRA---LQAAM--DGFEVM--T-LEEALRDADIFVTATG   87 (162)
T ss_dssp             -S--TTSEEEEE---SHHHHHHHHHHHHT-T-EEEEE-SSHHHH---HHHHH--TT-EEE----HHHHTTT-SEEEE-SS
T ss_pred             ceeeCCCEEEEeC-CCcccHHHHHHHhhC-CCEEEEEECChHHH---HHhhh--cCcEec--C-HHHHHhhCCEEEECCC
Confidence            4456899999999 999999999999999 89999987744222   21111  233332  1 2334566788888776


Q ss_pred             CC
Q 029640          107 PA  108 (190)
Q Consensus       107 ~~  108 (190)
                      ..
T Consensus        88 ~~   89 (162)
T PF00670_consen   88 NK   89 (162)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.65  E-value=0.032  Score=40.32  Aligned_cols=65  Identities=22%  Similarity=0.191  Sum_probs=40.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |++|.+.| .|-+|+.+++.|++. +++|.+.+|+++..    ..+... ....  +|-..+...++|+||-+.
T Consensus         1 m~~Ig~IG-lG~mG~~~a~~L~~~-g~~v~~~d~~~~~~----~~~~~~-g~~~--~~s~~e~~~~~dvvi~~v   65 (163)
T PF03446_consen    1 MMKIGFIG-LGNMGSAMARNLAKA-GYEVTVYDRSPEKA----EALAEA-GAEV--ADSPAEAAEQADVVILCV   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHT-TTEEEEEESSHHHH----HHHHHT-TEEE--ESSHHHHHHHBSEEEE-S
T ss_pred             CCEEEEEc-hHHHHHHHHHHHHhc-CCeEEeeccchhhh----hhhHHh-hhhh--hhhhhhHhhcccceEeec
Confidence            57899999 899999999999999 89999998854332    222222 2222  222223334567777665

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.62  E-value=0.04  Score=43.89  Aligned_cols=39  Identities=21%  Similarity=0.276  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      .+.|++|.|.|.+|.+|+.++..|+++ |+.|++..|+..
T Consensus       156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~-gatVtv~~~~t~  194 (301)
T PRK14194        156 DLTGKHAVVIGRSNIVGKPMAALLLQA-HCSVTVVHSRST  194 (301)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHC-CCEEEEECCCCC
Confidence            458999999999999999999999999 899999866543

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.57  E-value=0.026  Score=47.15  Aligned_cols=67  Identities=16%  Similarity=0.111  Sum_probs=45.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +.+++++|+| .|.||+.+++.|... |.+|+++.+++........     .++...  ++ ++...+.|+||.+.|
T Consensus       210 l~Gk~VlViG-~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~-----~G~~v~--~l-~eal~~aDVVI~aTG  276 (425)
T PRK05476        210 IAGKVVVVAG-YGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAM-----DGFRVM--TM-EEAAELGDIFVTATG  276 (425)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHh-----cCCEec--CH-HHHHhCCCEEEECCC
Confidence            5789999999 799999999999999 7899998876543221111     122221  22 233457888888765

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=95.49  E-value=0.06  Score=45.64  Aligned_cols=71  Identities=17%  Similarity=0.217  Sum_probs=47.8

Q ss_pred             cCCCEEEEEcc----------------cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccc--
Q 029640           30 QSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT--   91 (190)
Q Consensus        30 ~~~~~vlItG~----------------~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~--   91 (190)
                      +.|++|+||+|                ||-.|.+|++.+..+ |++|+++.-.....        ....+..+..+-.  
T Consensus       254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~-GA~VtlI~Gp~~~~--------~p~~v~~i~V~ta~e  324 (475)
T PRK13982        254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAA-GAEVTLISGPVDLA--------DPQGVKVIHVESARQ  324 (475)
T ss_pred             cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHC-CCcEEEEeCCcCCC--------CCCCceEEEecCHHH
Confidence            58999999975                799999999999999 89998885321110        1223444433222  


Q ss_pred             --ccc--cCCcCEEEEccCCCC
Q 029640           92 --EPL--LIEVDQIYHLACPAS  109 (190)
Q Consensus        92 --~~~--~~~~d~vi~~ag~~~  109 (190)
                        +..  ....|++|++|++.+
T Consensus       325 M~~av~~~~~~Di~I~aAAVaD  346 (475)
T PRK13982        325 MLAAVEAALPADIAIFAAAVAD  346 (475)
T ss_pred             HHHHHHhhCCCCEEEEeccccc
Confidence              211  124799999998765

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.47  E-value=0.13  Score=42.41  Aligned_cols=33  Identities=36%  Similarity=0.425  Sum_probs=30.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      |+|.|.| +||+|...+--|++. ||+|++++..+
T Consensus         1 MkI~viG-tGYVGLv~g~~lA~~-GHeVv~vDid~   33 (414)
T COG1004           1 MKITVIG-TGYVGLVTGACLAEL-GHEVVCVDIDE   33 (414)
T ss_pred             CceEEEC-CchHHHHHHHHHHHc-CCeEEEEeCCH
Confidence            6899999 999999999999999 89999998753

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.41  E-value=0.062  Score=42.53  Aligned_cols=37  Identities=16%  Similarity=0.283  Sum_probs=32.6

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      .+.|++++|.|.+..+|+-++..|+++ +..|+++-++
T Consensus       156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~-~atVtv~hs~  192 (285)
T PRK10792        156 DTYGLNAVVVGASNIVGRPMSLELLLA-GCTVTVCHRF  192 (285)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHC-CCeEEEEECC
Confidence            358999999999999999999999998 7888887654

>PRK08291 ectoine utilization protein EutC; Validated

Probab=95.36  E-value=0.051  Score=44.00  Aligned_cols=76  Identities=14%  Similarity=0.017  Sum_probs=48.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHh-cCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~-~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      .++++|.| +|..|++.+..|.. .+..+|.+..|+.+........+.....+.+...+-.+....+.|+||++....
T Consensus       132 ~~~v~IiG-aG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~  208 (330)
T PRK08291        132 ASRAAVIG-AGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE  208 (330)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC
Confidence            47899999 78889999898886 434789999987665555444332222333333332233445789998887543

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=95.35  E-value=0.099  Score=41.56  Aligned_cols=37  Identities=27%  Similarity=0.310  Sum_probs=32.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ..+.+++|+|++|.+|..+++.+... |..|+++.+++
T Consensus       161 ~~~~~vlI~ga~g~vG~~~~~~a~~~-g~~v~~~~~~~  197 (332)
T cd08259         161 KKGDTVLVTGAGGGVGIHAIQLAKAL-GARVIAVTRSP  197 (332)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEeCCH
Confidence            35789999999999999999999998 78888887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism]

Probab=95.34  E-value=0.012  Score=44.85  Aligned_cols=121  Identities=12%  Similarity=0.007  Sum_probs=76.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHH-----hc---CCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLM-----EN---EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIY  102 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~-----~~---~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi  102 (190)
                      ++++.++-+++|+|+..|.....     +-   ..|.|+++.|.+...           +++|-..|..-.. ..|+..+
T Consensus        11 ~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~-----------ritw~el~~~Gip-~sc~a~v   78 (315)
T KOG3019|consen   11 KSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKA-----------RITWPELDFPGIP-ISCVAGV   78 (315)
T ss_pred             ccccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCc-----------ccccchhcCCCCc-eehHHHH
Confidence            44667788899999988776332     21   137899999865543           4455444433211 1355555


Q ss_pred             EccCCC----CCcccccCchhHHHHHHHHHHHHHHHHHHcCC---eEEEEecceecCCCCCCCCCCCC
Q 029640          103 HLACPA----SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESY  163 (190)
Q Consensus       103 ~~ag~~----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~vSS~~~~~~~~~~~~~e~~  163 (190)
                      |.+|..    -..|+++-..+++.-.+..+..++++..+.+.   ..|++|...+|-+.....|+|++
T Consensus        79 na~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~~  146 (315)
T KOG3019|consen   79 NAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEKI  146 (315)
T ss_pred             hhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEecccccccccccc
Confidence            555422    12333333334455556667888888887762   59999999999988888899984

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=95.32  E-value=0.058  Score=45.96  Aligned_cols=70  Identities=14%  Similarity=0.180  Sum_probs=45.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEe-ccccccccCCcCEEEEccCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR-HDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~d~vi~~ag~  107 (190)
                      +.+++++|+| +|.+|+.++..|.+. |.+|.+..|+.+........ ..   ..... .++.  ...++|+||++...
T Consensus       330 ~~~k~vlIiG-aGgiG~aia~~L~~~-G~~V~i~~R~~~~~~~la~~-~~---~~~~~~~~~~--~l~~~DiVInatP~  400 (477)
T PRK09310        330 LNNQHVAIVG-AGGAAKAIATTLARA-GAELLIFNRTKAHAEALASR-CQ---GKAFPLESLP--ELHRIDIIINCLPP  400 (477)
T ss_pred             cCCCEEEEEc-CcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHH-hc---cceechhHhc--ccCCCCEEEEcCCC
Confidence            4678999999 589999999999998 77888888754332222111 11   11111 1111  23578999999754

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.31  E-value=0.094  Score=37.07  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      .++|++++|.|.+.-+|+.++..|.++ +..|.+..++
T Consensus        25 ~~~gk~v~VvGrs~~vG~pla~lL~~~-gatV~~~~~~   61 (140)
T cd05212          25 RLDGKKVLVVGRSGIVGAPLQCLLQRD-GATVYSCDWK   61 (140)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEeCCC
Confidence            358999999999999999999999998 8899888654

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=95.26  E-value=0.07  Score=42.09  Aligned_cols=65  Identities=23%  Similarity=0.219  Sum_probs=41.7

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |+|.|.| .|.+|..++..|.+. |++|.+.+|+.+....    ......+.....+.  ....++|+||-+.
T Consensus         1 m~I~IIG-~G~mG~sla~~L~~~-g~~V~~~d~~~~~~~~----a~~~g~~~~~~~~~--~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVG-LGLIGGSLGLDLRSL-GHTVYGVSRRESTCER----AIERGLVDEASTDL--SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEe-ecHHHHHHHHHHHHC-CCEEEEEECCHHHHHH----HHHCCCcccccCCH--hHhcCCCEEEEcC
Confidence            4799999 899999999999998 8899999885433221    11111111111111  1345688888876

>cd08293 PTGR2 Prostaglandin reductase

Probab=95.26  E-value=0.023  Score=45.79  Aligned_cols=34  Identities=21%  Similarity=0.047  Sum_probs=29.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~   67 (190)
                      .+|+|.|++|.+|..+++.+... |. +|+++.++.
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~  190 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSD  190 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCH
Confidence            79999999999999999988887 76 788887643

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.25  E-value=0.059  Score=44.97  Aligned_cols=68  Identities=18%  Similarity=0.163  Sum_probs=46.2

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      .+.+++|+|.| .|.||+.+++.+... |.+|+++.+++...... ..    .++...  ++ ++...+.|+||.+.|
T Consensus       199 ~l~GktVvViG-~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A-~~----~G~~~~--~~-~e~v~~aDVVI~atG  266 (413)
T cd00401         199 MIAGKVAVVAG-YGDVGKGCAQSLRGQ-GARVIVTEVDPICALQA-AM----EGYEVM--TM-EEAVKEGDIFVTTTG  266 (413)
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECChhhHHHH-Hh----cCCEEc--cH-HHHHcCCCEEEECCC
Confidence            35789999999 899999999999998 77898887754432211 11    122222  22 233456899998876

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.24  E-value=0.18  Score=33.87  Aligned_cols=64  Identities=25%  Similarity=0.409  Sum_probs=45.8

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------CCcCEEEEcc
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLA  105 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------~~~d~vi~~a  105 (190)
                      |+|.| .|-+|+.+++.|.+. +..|.++.++++.    ...+. ...+.++.+|..+...      .+.+.||-+.
T Consensus         1 vvI~G-~g~~~~~i~~~L~~~-~~~vvvid~d~~~----~~~~~-~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~   70 (116)
T PF02254_consen    1 VVIIG-YGRIGREIAEQLKEG-GIDVVVIDRDPER----VEELR-EEGVEVIYGDATDPEVLERAGIEKADAVVILT   70 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHT-TSEEEEEESSHHH----HHHHH-HTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred             eEEEc-CCHHHHHHHHHHHhC-CCEEEEEECCcHH----HHHHH-hcccccccccchhhhHHhhcCccccCEEEEcc
Confidence            57888 689999999999996 7789999875433    22222 2247899999998743      4688887776

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=95.24  E-value=0.092  Score=41.16  Aligned_cols=67  Identities=18%  Similarity=0.294  Sum_probs=39.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcC-CCeEE-EEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENE-KNEVI-VVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~-~~~v~-~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +++.|.| .|.+|+.+++.|.+.+ +.++. +.+|+.+.    ...+........+ .|+.+ ...++|+|+.|+.
T Consensus         2 mrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~----a~~~a~~~~~~~~-~~~~e-ll~~~DvVvi~a~   70 (265)
T PRK13304          2 LKIGIVG-CGAIASLITKAILSGRINAELYAFYDRNLEK----AENLASKTGAKAC-LSIDE-LVEDVDLVVECAS   70 (265)
T ss_pred             CEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEECCCHHH----HHHHHHhcCCeeE-CCHHH-HhcCCCEEEEcCC
Confidence            6899999 7999999999998863 34544 44443222    1111111112211 23222 2257999999875

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.18  E-value=0.078  Score=41.97  Aligned_cols=36  Identities=14%  Similarity=0.238  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      .+.|++++|.|.+..+|+-++..|.++ +..|+++..
T Consensus       161 ~l~Gk~vvViGrs~iVGkPla~lL~~~-~atVtv~hs  196 (287)
T PRK14176        161 DIEGKNAVIVGHSNVVGKPMAAMLLNR-NATVSVCHV  196 (287)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHC-CCEEEEEec
Confidence            358999999999999999999999998 788888754

>PRK08818 prephenate dehydrogenase; Provisional

Probab=95.18  E-value=0.067  Score=44.00  Aligned_cols=36  Identities=28%  Similarity=0.230  Sum_probs=30.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      ..++|+|.|.+|.||.++++.|.+..+++|++.++.
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~   38 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPA   38 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence            347899999889999999999997647888888774

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.18  E-value=0.06  Score=43.52  Aligned_cols=75  Identities=8%  Similarity=0.015  Sum_probs=49.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHh-cCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~-~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      .++++|+| +|..|++.++.|+. .+-.+|.+..|+.+........+.....+.+...+-..+...+.|+||++-..
T Consensus       129 ~~~v~iiG-aG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s  204 (326)
T TIGR02992       129 SSVVAIFG-AGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPS  204 (326)
T ss_pred             CcEEEEEC-CCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCC
Confidence            46899999 89999999999975 42368999999776655544443222123333333223344678999988754

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.16  E-value=0.051  Score=43.91  Aligned_cols=76  Identities=12%  Similarity=0.108  Sum_probs=48.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhc-CCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~-~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      .++++|+| +|.+|+..+..++.. +-.+|.+.+|+.+........+.....+.....+-.++...+.|+||++-...
T Consensus       127 ~~~v~iiG-aG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~  203 (325)
T PRK08618        127 AKTLCLIG-TGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK  203 (325)
T ss_pred             CcEEEEEC-CcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC
Confidence            47899999 899999988887653 23689999887665554444332222233322322233446789999887543

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=95.16  E-value=0.25  Score=38.13  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=29.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      +..+|+|.| -|.+|+|.+++|++.|=.++.+++..
T Consensus        29 ~~~~V~VvG-iGGVGSw~veALaRsGig~itlID~D   63 (263)
T COG1179          29 KQAHVCVVG-IGGVGSWAVEALARSGIGRITLIDMD   63 (263)
T ss_pred             hhCcEEEEe-cCchhHHHHHHHHHcCCCeEEEEecc
Confidence            568899999 89999999999999943677777654

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.13  E-value=0.12  Score=41.22  Aligned_cols=97  Identities=14%  Similarity=0.230  Sum_probs=57.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh-hhhhhhcCCceEEEecccc----ccccCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-NLRKWIGHPRFELIRHDVT----EPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~D~~----~~~~~~~d~vi~~a  105 (190)
                      +..++.|.| +|.||..++..+.+..+.++..+...+..... .....   .++.....|+.    +..+.++|+||.+.
T Consensus         3 ~klrVAIIG-tG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~---~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT   78 (302)
T PRK08300          3 SKLKVAIIG-SGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARR---LGVATSAEGIDGLLAMPEFDDIDIVFDAT   78 (302)
T ss_pred             CCCeEEEEc-CcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHH---cCCCcccCCHHHHHhCcCCCCCCEEEECC
Confidence            457899999 99999999988887645666655433322211 11111   12222211211    22346799999887


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      +..                  ........+.+.|+++|--+++.
T Consensus        79 ~a~------------------~H~e~a~~a~eaGk~VID~sPA~  104 (302)
T PRK08300         79 SAG------------------AHVRHAAKLREAGIRAIDLTPAA  104 (302)
T ss_pred             CHH------------------HHHHHHHHHHHcCCeEEECCccc
Confidence            521                  12345666777787777766655

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.12  E-value=0.085  Score=42.41  Aligned_cols=65  Identities=14%  Similarity=0.155  Sum_probs=44.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceE-EEeccccccccCCcCEEEEccC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFE-LIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +.++++.|.| .|.||+.+++.|... |.+|.+.+|..+...          .+. +...+-.++.+.++|+|+.+..
T Consensus       134 l~g~tvgIvG-~G~IG~~vA~~l~af-G~~V~~~~~~~~~~~----------~~~~~~~~~~l~e~l~~aDvvv~~lP  199 (312)
T PRK15469        134 REDFTIGILG-AGVLGSKVAQSLQTW-GFPLRCWSRSRKSWP----------GVQSFAGREELSAFLSQTRVLINLLP  199 (312)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCCCCCC----------CceeecccccHHHHHhcCCEEEECCC
Confidence            4789999999 999999999999988 899999887543211          111 1112222334457888877763

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.10  E-value=0.039  Score=40.88  Aligned_cols=33  Identities=39%  Similarity=0.524  Sum_probs=26.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      |+|.|.| .||+|..++..|++. |++|++++.++
T Consensus         1 M~I~ViG-lGyvGl~~A~~lA~~-G~~V~g~D~~~   33 (185)
T PF03721_consen    1 MKIAVIG-LGYVGLPLAAALAEK-GHQVIGVDIDE   33 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHT-TSEEEEE-S-H
T ss_pred             CEEEEEC-CCcchHHHHHHHHhC-CCEEEEEeCCh
Confidence            7899998 999999999999999 89999998753

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=95.09  E-value=0.077  Score=44.14  Aligned_cols=75  Identities=17%  Similarity=0.270  Sum_probs=55.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      +.+++++|.| .|-+|.-+++.|..++-..|++..|..+.......++    +...+..|-........|+||-+-|...
T Consensus       176 L~~~~vlvIG-AGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~----~~~~~~l~el~~~l~~~DvVissTsa~~  250 (414)
T COG0373         176 LKDKKVLVIG-AGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKL----GAEAVALEELLEALAEADVVISSTSAPH  250 (414)
T ss_pred             cccCeEEEEc-ccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHh----CCeeecHHHHHHhhhhCCEEEEecCCCc
Confidence            4789999999 8999999999999994488999988665544433332    3455555555556678999999876444

>PLN02494 adenosylhomocysteinase

Probab=95.07  E-value=0.069  Score=45.16  Aligned_cols=40  Identities=15%  Similarity=0.135  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029640           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        28 ~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      ..+.+++++|+| .|.||+.+++.+... |.+|+++.+++..
T Consensus       250 i~LaGKtVvViG-yG~IGr~vA~~aka~-Ga~VIV~e~dp~r  289 (477)
T PLN02494        250 VMIAGKVAVICG-YGDVGKGCAAAMKAA-GARVIVTEIDPIC  289 (477)
T ss_pred             CccCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCchh
Confidence            345789999999 899999999999988 7899998776543

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.07  E-value=0.065  Score=42.24  Aligned_cols=66  Identities=15%  Similarity=0.177  Sum_probs=43.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +++++|.| +|..+++++..|.+.+..+|.++.|+.+........+    .+.+. .++   .....|+|||+-.
T Consensus       122 ~~~vlilG-aGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~----~~~~~-~~~---~~~~~dlvINaTp  187 (272)
T PRK12550        122 DLVVALRG-SGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELY----GYEWR-PDL---GGIEADILVNVTP  187 (272)
T ss_pred             CCeEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHh----CCcch-hhc---ccccCCEEEECCc
Confidence            46899999 6999999999999984457999999765443322221    11110 011   1245899999964

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=95.07  E-value=0.34  Score=38.55  Aligned_cols=32  Identities=34%  Similarity=0.485  Sum_probs=26.8

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      +|+|.| .|.+|.++++.|+..|-.++.+++.+
T Consensus         1 kVlVVG-aGGlG~eilknLal~Gvg~I~IvD~D   32 (291)
T cd01488           1 KILVIG-AGGLGCELLKNLALSGFRNIHVIDMD   32 (291)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            588999 89999999999999954678887654

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=95.06  E-value=0.42  Score=38.84  Aligned_cols=98  Identities=18%  Similarity=0.247  Sum_probs=55.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCCChhhhhhhhc----------------------CCceEEEe-c
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIG----------------------HPRFELIR-H   88 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~~~~~~~~~----------------------~~~~~~~~-~   88 (190)
                      .+|.|-|. |-||+.+.+.|.+++ ..++.++.-++....+.+..++.                      ...+...+ -
T Consensus         2 ~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~   80 (336)
T PRK13535          2 IRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHER   80 (336)
T ss_pred             eEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcC
Confidence            57999998 999999999999862 13455553332222222222211                      11222321 1


Q ss_pred             ccccccc--CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640           89 DVTEPLL--IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus        89 D~~~~~~--~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      |..+...  .++|+||-|+|...                  +...+....+.|.+.|.+|+..
T Consensus        81 ~p~~~~w~~~gvDiVle~tG~~~------------------s~~~a~~~l~aGAk~V~iSap~  125 (336)
T PRK13535         81 DIASLPWRELGVDVVLDCTGVYG------------------SREDGEAHIAAGAKKVLFSHPG  125 (336)
T ss_pred             CcccCcccccCCCEEEEccchhh------------------hHHHHHHHHHcCCEEEEecCCc
Confidence            3333323  57999999997432                  1234444555678888888764

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.05  E-value=0.18  Score=40.02  Aligned_cols=37  Identities=22%  Similarity=0.295  Sum_probs=32.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK   71 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~   71 (190)
                      ++|.|.| .|.+|..++..|+.. |++|++.+++++..+
T Consensus         6 ~~V~ViG-aG~mG~~iA~~~a~~-G~~V~l~d~~~~~~~   42 (286)
T PRK07819          6 QRVGVVG-AGQMGAGIAEVCARA-GVDVLVFETTEELAT   42 (286)
T ss_pred             cEEEEEc-ccHHHHHHHHHHHhC-CCEEEEEECCHHHHH
Confidence            5899999 699999999999999 899999998766544

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.97  E-value=0.09  Score=41.89  Aligned_cols=35  Identities=17%  Similarity=0.346  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEc
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~   64 (190)
                      .+.|++|+|.|.++.+|+.++..|++. ++.|++..
T Consensus       155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~-g~tVtv~~  189 (296)
T PRK14188        155 DLSGLNAVVIGRSNLVGKPMAQLLLAA-NATVTIAH  189 (296)
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHhC-CCEEEEEC
Confidence            368999999999999999999999998 89999884

>PRK14851 hypothetical protein; Provisional

Probab=94.97  E-value=0.49  Score=42.12  Aligned_cols=102  Identities=9%  Similarity=0.029  Sum_probs=62.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +.+.+|+|.| .|.+|..++..|+..|-.++.+++.+.-...+.                      +.++-+..+++.+.
T Consensus        41 L~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~  119 (679)
T PRK14851         41 LAEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP  119 (679)
T ss_pred             HhcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence            3678999999 899999999999999546777765442111111                      11111223566665


Q ss_pred             ccccccc----cCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEec
Q 029640           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus        88 ~D~~~~~----~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS  147 (190)
                      ..+....    +.++|+||.+.-..         .      +..-..+.+.|.+.++.+|..+.
T Consensus       120 ~~i~~~n~~~~l~~~DvVid~~D~~---------~------~~~r~~l~~~c~~~~iP~i~~g~  168 (679)
T PRK14851        120 AGINADNMDAFLDGVDVVLDGLDFF---------Q------FEIRRTLFNMAREKGIPVITAGP  168 (679)
T ss_pred             cCCChHHHHHHHhCCCEEEECCCCC---------c------HHHHHHHHHHHHHCCCCEEEeec
Confidence            5555332    35799998776210         0      11112466788888888887664

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=94.97  E-value=0.2  Score=39.45  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=56.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhc-CCCeEEEE-cCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVV-DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~-~~~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +.++|.|.| .|.||+.+++.|.+. .+.++..+ +|+.+. ...+....   .......|+.+ ...++|+|+-++...
T Consensus         5 ~~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~-a~~~a~~~---g~~~~~~~~ee-ll~~~D~Vvi~tp~~   78 (271)
T PRK13302          5 PELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDPQR-HADFIWGL---RRPPPVVPLDQ-LATHADIVVEAAPAS   78 (271)
T ss_pred             CeeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCHHH-HHHHHHhc---CCCcccCCHHH-HhcCCCEEEECCCcH
Confidence            457899999 899999999999873 46676644 443222 11111111   11111122222 234689998887532


Q ss_pred             CCccc-c---cCchhHHHHH---HHHHHHHHHHHHHcCCeEEEEe
Q 029640          109 SPIFY-K---YNPVKTIKTN---VIGTLNMLGLAKRVGARILLTS  146 (190)
Q Consensus       109 ~~~~~-~---~~~~~~~~~n---~~~~~~l~~~~~~~~~~~i~vS  146 (190)
                      ..... .   .....++...   +.-...+.+++++++.++...|
T Consensus        79 ~h~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~s  123 (271)
T PRK13302         79 VLRAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPT  123 (271)
T ss_pred             HHHHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcc
Confidence            21000 0   0000011011   1124677788888887765543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.97  E-value=0.12  Score=43.53  Aligned_cols=69  Identities=20%  Similarity=0.249  Sum_probs=49.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------cCCcCEEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------LIEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------~~~~d~vi~  103 (190)
                      ..++++|.| .|.+|+.+++.|.+. +++|.++.++++.    ...+.. ...+..+.+|.++..      ..+.|.||-
T Consensus       230 ~~~~iiIiG-~G~~g~~l~~~L~~~-~~~v~vid~~~~~----~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~  303 (453)
T PRK09496        230 PVKRVMIVG-GGNIGYYLAKLLEKE-GYSVKLIERDPER----AEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIA  303 (453)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhC-CCeEEEEECCHHH----HHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence            468899999 599999999999998 8899999875432    222211 135677888988764      235788775


Q ss_pred             cc
Q 029640          104 LA  105 (190)
Q Consensus       104 ~a  105 (190)
                      +.
T Consensus       304 ~~  305 (453)
T PRK09496        304 LT  305 (453)
T ss_pred             CC
Confidence            54

>PRK14852 hypothetical protein; Provisional

Probab=94.96  E-value=0.45  Score=43.84  Aligned_cols=107  Identities=11%  Similarity=0.014  Sum_probs=64.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +...+|+|.| .|.+|..++..|+..|-.++.+++.+.-...+.                      +.++-+..++..+.
T Consensus       330 L~~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~  408 (989)
T PRK14852        330 LLRSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP  408 (989)
T ss_pred             HhcCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence            3668999999 899999999999999545777765542221111                      11111123555555


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ..+..+    -+.++|+||.+.-...               +..-..+.+.|.+.++.+|..++.+.+|
T Consensus       409 ~~I~~en~~~fl~~~DiVVDa~D~~~---------------~~~rr~l~~~c~~~~IP~I~ag~~G~~g  462 (989)
T PRK14852        409 EGVAAETIDAFLKDVDLLVDGIDFFA---------------LDIRRRLFNRALELGIPVITAGPLGYSC  462 (989)
T ss_pred             cCCCHHHHHHHhhCCCEEEECCCCcc---------------HHHHHHHHHHHHHcCCCEEEeeccccCe
Confidence            444332    2357899987762110               1112345667888888999888755333

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.94  E-value=0.4  Score=40.37  Aligned_cols=75  Identities=24%  Similarity=0.192  Sum_probs=48.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEEeccccccccCCcCEEEEccCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +....|+|.| -|..|..+++.|.+. |++|.+.+......  ....+... .++.+....-....+.++|.||...|+.
T Consensus         4 ~~~~~~~v~G-~G~sG~s~a~~L~~~-G~~v~~~D~~~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~   79 (448)
T PRK03803          4 QSDGLHIVVG-LGKTGLSVVRFLARQ-GIPFAVMDSREQPP--GLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLA   79 (448)
T ss_pred             ccCCeEEEEe-ecHhHHHHHHHHHhC-CCeEEEEeCCCCch--hHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCC
Confidence            4567899999 677999999999998 89999998754321  11122111 2455544322222345689999988764

>PRK13243 glyoxylate reductase; Reviewed

Probab=94.94  E-value=0.048  Score=44.26  Aligned_cols=66  Identities=17%  Similarity=0.069  Sum_probs=44.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +.++++.|.| .|.||+.+++.|... |.+|.+.+|......  ...    ..+.+  .+ .++.+.+.|+|+.+.-
T Consensus       148 L~gktvgIiG-~G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~--~~~----~~~~~--~~-l~ell~~aDiV~l~lP  213 (333)
T PRK13243        148 VYGKTIGIIG-FGRIGQAVARRAKGF-GMRILYYSRTRKPEA--EKE----LGAEY--RP-LEELLRESDFVSLHVP  213 (333)
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHHHC-CCEEEEECCCCChhh--HHH----cCCEe--cC-HHHHHhhCCEEEEeCC
Confidence            4789999999 899999999999988 889999888543211  110    01121  12 2234567898877763

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=94.93  E-value=0.27  Score=39.12  Aligned_cols=108  Identities=12%  Similarity=-0.000  Sum_probs=64.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEe-cccccc----ccCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR-HDVTEP----LLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~D~~~~----~~~~~d~vi~~a  105 (190)
                      ++.+++|.||+|.+|+-+-+.-.-. |+.|+...-++++..-...++.-...+.+-. .|+...    .-.++|+-|-|.
T Consensus       153 ~geTv~VSaAsGAvGql~GQ~Ak~~-Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNV  231 (343)
T KOG1196|consen  153 KGETVFVSAASGAVGQLVGQFAKLM-GCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENV  231 (343)
T ss_pred             CCCEEEEeeccchhHHHHHHHHHhc-CCEEEEecCChhhhhhhHhccCCccceeccCccCHHHHHHHhCCCcceEEEecc
Confidence            5789999999999999888877777 8888887654443322211111111111111 011110    113589999888


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCC
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHP  158 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~  158 (190)
                      |...                  ...++..++.++ |+++++-.+.|..+.+.+
T Consensus       232 GG~~------------------lDavl~nM~~~g-ri~~CG~ISqYN~~~~~~  265 (343)
T KOG1196|consen  232 GGKM------------------LDAVLLNMNLHG-RIAVCGMISQYNLENPEG  265 (343)
T ss_pred             CcHH------------------HHHHHHhhhhcc-ceEeeeeehhccccCCcc
Confidence            6321                  123445555555 999999988887654433

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=94.93  E-value=0.12  Score=37.44  Aligned_cols=33  Identities=33%  Similarity=0.476  Sum_probs=27.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      ..+|+|.||-|.+|+++++.+..+ ++-|.-++-
T Consensus         3 agrVivYGGkGALGSacv~~Fkan-nywV~siDl   35 (236)
T KOG4022|consen    3 AGRVIVYGGKGALGSACVEFFKAN-NYWVLSIDL   35 (236)
T ss_pred             CceEEEEcCcchHhHHHHHHHHhc-CeEEEEEee
Confidence            468999999999999999999998 666555544

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=94.89  E-value=0.05  Score=44.87  Aligned_cols=35  Identities=17%  Similarity=0.339  Sum_probs=31.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      ..++|.|.||.|.+|..+++.|.+. |+.|.+.+|+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~-G~~V~~~d~~  131 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLS-GYQVRILEQD  131 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHC-CCeEEEeCCC
Confidence            4588999999999999999999999 8999999874

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.88  E-value=0.097  Score=41.44  Aligned_cols=36  Identities=14%  Similarity=0.252  Sum_probs=31.8

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      .+.|++++|.|.++.+|+.++..|.++ +..|+++-+
T Consensus       155 ~l~Gk~vvViGrs~iVGkPla~lL~~~-~atVt~~hs  190 (285)
T PRK14189        155 PLRGAHAVVIGRSNIVGKPMAMLLLQA-GATVTICHS  190 (285)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHC-CCEEEEecC
Confidence            358999999999999999999999998 788887644

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=94.85  E-value=0.041  Score=44.33  Aligned_cols=37  Identities=11%  Similarity=0.067  Sum_probs=31.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ..+.+++|+|++|.+|..+++.+... |.+|+++.++.
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~  186 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSD  186 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCH
Confidence            46789999999999999999988888 77888877653

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.84  E-value=0.033  Score=45.85  Aligned_cols=73  Identities=14%  Similarity=0.143  Sum_probs=44.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecc--ccccccCCcCEEEEccCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD--VTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D--~~~~~~~~~d~vi~~ag~  107 (190)
                      ...+++|+| .|-+|+.+++.+... |.+|++++|+...... +...... .+.....+  .......+.|+||++++.
T Consensus       166 ~~~~VlViG-aG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~-l~~~~g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~  240 (370)
T TIGR00518       166 EPGDVTIIG-GGVVGTNAAKMANGL-GATVTILDINIDRLRQ-LDAEFGG-RIHTRYSNAYEIEDAVKRADLLIGAVLI  240 (370)
T ss_pred             CCceEEEEc-CCHHHHHHHHHHHHC-CCeEEEEECCHHHHHH-HHHhcCc-eeEeccCCHHHHHHHHccCCEEEEcccc
Confidence            446799998 589999999999999 7789999885433221 1111111 11111111  111223579999999854

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.83  E-value=0.33  Score=40.93  Aligned_cols=72  Identities=18%  Similarity=0.045  Sum_probs=46.0

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh-hhhhcCCceEEEeccccc-----cccCCcCEEEEccCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWIGHPRFELIRHDVTE-----PLLIEVDQIYHLACP  107 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~-~~~~~~~~~~~~~~D~~~-----~~~~~~d~vi~~ag~  107 (190)
                      +|+|.| .|..|...++.|.+. |+.|.+.++......... ..+. ..++.+....-.+     ....++|.||...|.
T Consensus         2 ~v~viG-~G~sG~s~a~~l~~~-G~~V~~~D~~~~~~~~~~~~~l~-~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi   78 (459)
T PRK02705          2 IAHVIG-LGRSGIAAARLLKAQ-GWEVVVSDRNDSPELLERQQELE-QEGITVKLGKPLELESFQPWLDQPDLVVVSPGI   78 (459)
T ss_pred             eEEEEc-cCHHHHHHHHHHHHC-CCEEEEECCCCchhhHHHHHHHH-HcCCEEEECCccchhhhhHHhhcCCEEEECCCC
Confidence            589999 788999999999998 899999987644322211 1121 2244444322112     124568999998875


Q ss_pred             C
Q 029640          108 A  108 (190)
Q Consensus       108 ~  108 (190)
                      .
T Consensus        79 ~   79 (459)
T PRK02705         79 P   79 (459)
T ss_pred             C
Confidence            4

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=94.77  E-value=0.06  Score=45.54  Aligned_cols=38  Identities=18%  Similarity=0.190  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      .+.+++++|+| .|.||+.+++.|... |.+|++..+++.
T Consensus       251 ~LaGKtVgVIG-~G~IGr~vA~rL~a~-Ga~ViV~e~dp~  288 (476)
T PTZ00075        251 MIAGKTVVVCG-YGDVGKGCAQALRGF-GARVVVTEIDPI  288 (476)
T ss_pred             CcCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCch
Confidence            45899999999 889999999999998 789988876543

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=94.77  E-value=0.13  Score=40.84  Aligned_cols=104  Identities=14%  Similarity=0.104  Sum_probs=61.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc----ccCCcCEEEEccC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP----LLIEVDQIYHLAC  106 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~----~~~~~d~vi~~ag  106 (190)
                      .|.+|+|++|+|.+|+-+.+.-.-. |++|+.+.-.+++-.-....+.-...+++-.-|+...    .-.++|+.|-|.|
T Consensus       150 ~GetvvVSaAaGaVGsvvgQiAKlk-G~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeNVG  228 (340)
T COG2130         150 AGETVVVSAAAGAVGSVVGQIAKLK-GCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVG  228 (340)
T ss_pred             CCCEEEEEecccccchHHHHHHHhh-CCeEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCeEEEEEcCC
Confidence            6789999999999999888766666 8999998654433222211111112233322333211    1246999999987


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCC
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDP  154 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~  154 (190)
                      ...           +       ..++..+... .|+++++-++.|..+
T Consensus       229 g~v-----------~-------DAv~~~ln~~-aRi~~CG~IS~YN~~  257 (340)
T COG2130         229 GEV-----------L-------DAVLPLLNLF-ARIPVCGAISQYNAP  257 (340)
T ss_pred             chH-----------H-------HHHHHhhccc-cceeeeeehhhcCCC
Confidence            321           0       1122222221 389999998888865

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=94.75  E-value=0.12  Score=40.85  Aligned_cols=36  Identities=22%  Similarity=0.371  Sum_probs=30.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      .++|+|.| .|.||+++++.|... |+.+.++.++...
T Consensus         3 ~~~v~IvG-~GliG~s~a~~l~~~-g~~v~i~g~d~~~   38 (279)
T COG0287           3 SMKVGIVG-LGLMGGSLARALKEA-GLVVRIIGRDRSA   38 (279)
T ss_pred             CcEEEEEC-CchHHHHHHHHHHHc-CCeEEEEeecCcH
Confidence            46787777 999999999999999 8888888775444

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=94.75  E-value=0.38  Score=40.30  Aligned_cols=72  Identities=18%  Similarity=0.053  Sum_probs=46.2

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccccCCcCEEEEccCCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      ++.|.| -|..|..+++.|.++ |++|.+.+............+.. ..++.+....- .....++|.||...|+.
T Consensus         1 ~~~~iG-~G~~G~a~a~~l~~~-G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~   73 (433)
T TIGR01087         1 KILILG-LGKTGRAVARFLHKK-GAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIP   73 (433)
T ss_pred             CEEEEE-eCHhHHHHHHHHHHC-CCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCC
Confidence            378888 778999999999999 89999998765433222111111 12455543311 22345689999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
4ef7_B	337	Udp-Xylose Synthase Length = 337		1e-57
2b69_A	343	Crystal Structure Of Human Udp-Glucoronic Acid Deca		3e-56
3ehe_A	313	Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-		2e-16
3icp_A	312	Crystal Structure Of Udp-Galactose 4-Epimerase Leng		7e-16
3aw9_A	308	Structure Of Udp-Galactose 4-Epimerase Mutant Lengt		4e-13
1r66_A	337	Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr		3e-12
2bll_A	345	Apo-Structure Of The C-Terminal Decarboxylase Domai		6e-12
1r6d_A	337	Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc		6e-12
1kep_A	348	The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra		2e-11
1z74_A	358	Crystal Structure Of E.Coli Arna Dehydrogenase (Dec		2e-11
1u9j_A	358	Crystal Structure Of E. Coli Arna (Pmri) Decarboxyl		2e-11
1z7b_A	358	Crystal Structure Of E.Coli Arna Dehydrogenase (Dec		2e-11
1z75_A	358	Crystal Structure Of Arna Dehydrogenase (decarboxyl		2e-11
1z7e_A	660	Crystal Structure Of Full Length Arna Length = 660		3e-11
1z73_A	358	Crystal Structure Of E. Coli Arna Dehydrogenase (de		5e-11
2hun_A	336	Crystal Structure Of Hypothetical Protein Ph0414 Fr		6e-11
4egb_A	346	3.0 Angstrom Resolution Crystal Structure Of Dtdp-G		2e-10
1g1a_A	361	The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra		2e-10
3sxp_A	362	Crystal Structure Of Helicobacter Pylori Adp-L-Glyc		3e-09
2pzk_A	330	Crystal Structure Of The Bordetella Bronchiseptica		4e-09
1kvs_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		9e-09
1bxk_A	355	Dtdp-Glucose 4,6-Dehydratase From E. Coli Length =		1e-08
1orr_A	347	Crystal Structure Of Cdp-tyvelose 2-epimerase Compl		1e-08
1kvu_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		2e-08
2udp_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		2e-08
2pzj_A	377	Crystal Structure Of The Bordetella Bronchiseptica		2e-08
1lrk_A	338	Crystal Structure Of Escherichia Coli Udp-Galactose		2e-08
1a9y_A	338	Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX		2e-08
1lrj_A	338	Crystal Structure Of E. Coli Udp-Galactose 4-Epimer		2e-08
1kvr_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		2e-08
1a9z_A	338	Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX		3e-08
1kvq_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		3e-08
1kvt_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		4e-08
3vps_A	321	Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5		4e-08
2p5u_A	311	Crystal Structure Of Thermus Thermophilus Hb8 Udp-G		5e-08
1z45_A	699	Crystal Structure Of The Gal10 Fusion Protein Galac		6e-08
1hzj_A	348	Human Udp-Galactose 4-Epimerase: Accommodation Of U		6e-08
1ek5_A	348	Structure Of Human Udp-Galactose 4-Epimerase In Com		6e-08
1i3k_A	348	Molecular Basis For Severe Epimerase-Deficiency Gal		7e-08
2pk3_A	321	Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose		9e-08
3slg_A	372	Crystal Structure Of Pbgp3 Protein From Burkholderi		1e-07
2c20_A	330	Crystal Structure Of Udp-Glucose 4-Epimerase Length		3e-07
1sb8_A	352	Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A		3e-07
3lu1_A	364	Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-		6e-07
3ruc_A	351	Specific Recognition Of N-Acetylated Substrates And		7e-07
3ru9_A	351	Specific Recognition Of N-Acetylated Substrates And		7e-07
3ru7_A	351	Specific Recognition Of N-Acetylated Substrates And		7e-07
1gy8_A	397	Trypanosoma Brucei Udp-Galactose 4' Epimerase Lengt		8e-06
2gn4_A	344	Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehyd		3e-05
2q1w_A	333	Crystal Structure Of The Bordetella Bronchiseptica		4e-05
1wvg_A	359	Structure Of Cdp-D-Glucose 4,6-Dehydratase From Sal		8e-04

>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343

Iteration: 1
 Score =  214 bits (545), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 106/153 (69%), Positives = 119/153 (77%), Gaps = 6/153 (3%)
Query: 24  RFSKFFQSNM-----RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI 78
           R + +FQ +      RIL+TGGAGF+GSHL DKL   + +EV VVDN+FTG K N+  WI
Sbjct: 14  RENLYFQGHXEKDRKRILITGGAGFVGSHLTDKLXX-DGHEVTVVDNFFTGRKRNVEHWI 72
Query: 79  GHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
           GH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLN LGLAKRV
Sbjct: 73  GHENFELINHDVVEPLYIEVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRV 132
Query: 139 GARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
           GAR+LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct: 133 GARLLLASTSEVYGDPEVHPQSEDYWGHVNPIG 165

>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 83/140 (59%), Gaps = 6/140 (4%)
Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           I+VTGGAGFIGSH+VDKL  +E NE++V+DN  +G+++ + +     + +L   D+ +  
Sbjct: 4   IVVTGGAGFIGSHVVDKL--SESNEIVVIDNLSSGNEEFVNEAARLVKADLAADDIKD-Y 60
Query: 95  LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD 153
           L   ++++H+A          NP +  + NV+ T  +L   ++ G +RI+ TSTS VYG+
Sbjct: 61  LKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGE 120
Query: 154 PLVHPQDESYWGNVNPIGMF 173
             V P  E Y    +PI ++
Sbjct: 121 AKVIPTPEDY--PTHPISLY 138

>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 86/162 (53%), Gaps = 22/162 (13%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MRI+VTGGAGFIGSHLVDKL+E    EV+VVDN  +G ++ +     +P  EL   D+ +
Sbjct: 1   MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKD 54
Query: 93  PLL---IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTS 148
                 I+ D ++H A           P+     NV+ T N+L  A++ G R ++  S+S
Sbjct: 55  YSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSS 114
Query: 149 EVYGDPLV--HPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
            VYGD  V   P++E Y     PI ++      G  K  GE+
Sbjct: 115 TVYGDADVIPTPEEEPY----KPISVY------GAAKAAGEV 146

>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 24/161 (14%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVD--NYFTGSKDNLRKWIGHPRFELIRHDV 90
           MRI+VTGGAGFIGSHLVDKL+E    EV+VVD     TG    L     H R +L   D 
Sbjct: 1   MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDIVQRDTGGSAEL-----HVR-DL--KDY 51
Query: 91  TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSE 149
           +    I+ D ++H A           P+     NV+ T N+L  A++ G R ++  S+S 
Sbjct: 52  SWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSST 111
Query: 150 VYGDPLV--HPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
           VYGD  V   P++E Y     PI ++      G  K  GE+
Sbjct: 112 VYGDADVIPTPEEEPY----KPISVY------GAAKAAGEV 142

>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 71/150 (47%), Gaps = 17/150 (11%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENE-----KNEVIVVDNY-FTGSKDNLRKWIGHPRFELI 86
           MR+LVTGGAGFIGSH V +L+         +EVIV+D+  + G++ NL      PR   +
Sbjct: 1   MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 87  RHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A 140
             D+ +  L+      VD I H A  +             +TNV GT  +L  A   G  
Sbjct: 61  HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 141 RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170
           R++  ST EVYG       D   W   +P+
Sbjct: 121 RVVHVSTDEVYGSI-----DSGSWTESSPL 145

>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of Arna Length = 345

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
           MR+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++ 
Sbjct: 1   MRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISI 56
Query: 92  -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
                E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  S
Sbjct: 57  HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116
Query: 147 TSEVYG 152
           TSEVYG
Sbjct: 117 TSEVYG 122

>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 17/150 (11%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENE-----KNEVIVVDNY-FTGSKDNLRKWIGHPRFELI 86
           MR+LVTGGAGFIGSH V +L+         +EVIV+D+  + G++ NL      PR   +
Sbjct: 1   MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 87  RHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A 140
             D+ +  L+      VD I H A  +             +TNV GT  +L  A   G  
Sbjct: 61  HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 141 RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170
           R++  ST++VYG       D   W   +P+
Sbjct: 121 RVVHVSTNQVYGSI-----DSGSWTESSPL 145

>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound Length = 348

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 35  ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTE 92
           I+VTGGAGFIGS+ V  +  N  +  V V+D   + G+K NL   +G  R EL+  D+ +
Sbjct: 7   IIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILG-DRVELVVGDIAD 65
Query: 93  PLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
             L++      D I H A  +       +P   I TN IGT  +L  A++   R    ST
Sbjct: 66  AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVST 125
Query: 148 SEVYGD 153
            EVYGD
Sbjct: 126 DEVYGD 131

>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619y Mutant Length = 358

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +   R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D
Sbjct: 11  RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGD 66
Query: 90  VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
           ++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+
Sbjct: 67  ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 126
Query: 144 LTSTSEVYG 152
             STSEVYG
Sbjct: 127 FPSTSEVYG 135

>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase Domain Length = 358

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +   R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D
Sbjct: 11  RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGD 66
Query: 90  VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
           ++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+
Sbjct: 67  ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 126
Query: 144 LTSTSEVYG 152
             STSEVYG
Sbjct: 127 FPSTSEVYG 135

>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619e Mutant Length = 358

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +   R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D
Sbjct: 11  RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGD 66
Query: 90  VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
           ++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+
Sbjct: 67  ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 126
Query: 144 LTSTSEVYG 152
             STSEVYG
Sbjct: 127 FPSTSEVYG 135

>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase) Domain, R619m Mutant Length = 358

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +   R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D
Sbjct: 11  RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGD 66
Query: 90  VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
           ++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+
Sbjct: 67  ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 126
Query: 144 LTSTSEVYG 152
             STSEVYG
Sbjct: 127 FPSTSEVYG 135

>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +   R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D
Sbjct: 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGD 368
Query: 90  VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
           ++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 428
Query: 144 LTSTSEVYG 152
             STSEVYG
Sbjct: 429 FPSTSEVYG 437

>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase (decarboxylase) Domain, S433a Mutant Length = 358

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +   R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D
Sbjct: 11  RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGD 66
Query: 90  VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
           ++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+
Sbjct: 67  ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 126
Query: 144 LTSTSEVYG 152
             ST+EVYG
Sbjct: 127 FPSTAEVYG 135

>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSK-DNLRKWIGHPRFELIRHD 89
           +M++LVTGG GFIGS+ +  ++E   + EVI +D    GS   NL+     PR+  ++ D
Sbjct: 3   SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGD 62
Query: 90  VTE-----PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARI 142
           V +      L+ +VD + HLA  +       +P   + +NVIGT  +L   +R     R 
Sbjct: 63  VADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRF 122
Query: 143 LLTSTSEVYGDPL 155
           +  ST EVYGD L
Sbjct: 123 VHVSTDEVYGDIL 135

>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames In Complex With Nad Length = 346

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 11/136 (8%)
Query: 28  FFQSNM-RILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNY-FTGSKDNLRKWIGHPRFE 84
           +FQSN   ILVTGGAGFIGS+ V   +++ E  ++I  D   ++G+ +N++    HP + 
Sbjct: 19  YFQSNAXNILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYY 78
Query: 85  LIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR 137
            ++ ++    L+E       V  I + A  +       NP+    TNVIGT+ +L L K+
Sbjct: 79  FVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKK 138
Query: 138 V-GARILLTSTSEVYG 152
               +++  ST EVYG
Sbjct: 139 YPHIKLVQVSTDEVYG 154

>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 19/146 (13%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVT 91
           M+IL+TGGAGFIGS +V  +++N ++ V+ +D   + G+ ++L       R+     D+ 
Sbjct: 1   MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60
Query: 92  EPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---- 140
           +   I       + D + HLA  +        P   I+TN++GT  +L +A++  +    
Sbjct: 61  DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120
Query: 141 ------RILLTSTSEVYGDPLVHPQD 160
                 R    ST EVYGD L HP +
Sbjct: 121 DKKNNFRFHHISTDEVYGD-LPHPDE 145

>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad, Hp0859) Length = 362

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 17/137 (12%)
Query: 32  NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGS--KDNLRKWIGHPRF----- 83
           N  IL+TGGAGF+GS+L     EN  K +V+V+D + + +   +N    +GH +      
Sbjct: 10  NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFK 69
Query: 84  -ELIRHDVTEPL------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
            E+I  D+  PL       +  D ++H A  +       N    +KTN    LN+L +A+
Sbjct: 70  GEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTM--LNQELVMKTNYQAFLNLLEIAR 127
Query: 137 RVGARILLTSTSEVYGD 153
              A+++  S++ VYG+
Sbjct: 128 SKKAKVIYASSAGVYGN 144

>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 11/134 (8%)
Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           S+MRIL+TGGAG +GS+L++  +  + +E++V+DN+ TG ++ L    G     +I   V
Sbjct: 19  SHMRILITGGAGCLGSNLIEHWLP-QGHEILVIDNFATGKREVLPPVAG---LSVIEGSV 74
Query: 91  TEPLLIE--VDQIYHLACPASPIFYKYNP---VKTIKTNVIGTLNMLGLAKRVGARILLT 145
           T+  L+E   D         S   YK +P    +   TNV G++N+   A + G + LL 
Sbjct: 75  TDAGLLERAFDSFKPTHVVHSAAAYK-DPDDWAEDAATNVQGSINVAKAASKAGVKRLLN 133
Query: 146 -STSEVYGDPLVHP 158
             T+  YG P   P
Sbjct: 134 FQTALCYGRPATVP 147

>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +ST+ VYGD    P  ES+
Sbjct: 118 NFIFSSTATVYGDNPKIPYVESF 140

>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTE 92
           +IL+TGGAGFIGS LV  ++    + V+VVD   + G+  +L       RF   + D+ +
Sbjct: 3   KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 93  PLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA---------- 135
              +       + D + HLA  +        P   I+TN++GT  +L  A          
Sbjct: 63  RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 136 KRVGARILLTSTSEVYGDPLVHPQDE 161
           K+   R    ST EVYGD  +H  D+
Sbjct: 123 KKSAFRFHHISTDEVYGD--LHSTDD 146

>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 11/139 (7%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWIGHPRFELI------ 86
           ++L+TGG GF+GS+L    + ++  ++IV DN    G+ DNL        FE +      
Sbjct: 3   KLLITGGCGFLGSNLASFAL-SQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 61
Query: 87  RHDVTEPLLIEV-DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RIL 143
           ++DVT  +   + D  +HLA   +      NP    + NV GTLN+L   ++  +   I+
Sbjct: 62  KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 121
Query: 144 LTSTSEVYGDPLVHPQDES 162
            +ST++VYGD   +  +E+
Sbjct: 122 YSSTNKVYGDLEQYKYNET 140

>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S++ VYGD    P  ES+
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESF 140

>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S++ VYGD    P  ES+
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESF 140

>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmf In Complex With Nad+ Length = 377

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           +N  ++V GGAGF+GS+LV +L+E   N+V VVDN  +  K N+     HP        +
Sbjct: 31  ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPD---HPAVRFSETSI 87
Query: 91  TEPLLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM 131
           T+  L+     E D ++HLA         ++P+   + N + TL +
Sbjct: 88  TDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKL 133

>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S++ VYGD    P  ES+
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESF 140

>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S + VYGD    P  ES+
Sbjct: 118 NFIFSSAATVYGDQPKIPYVESF 140

>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S++ VYGD    P  ES+
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESF 140

>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S + VYGD    P  ES+
Sbjct: 118 NFIFSSAATVYGDQPKIPYVESF 140

>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S + VYGD    P  ES+
Sbjct: 118 NFIFSSAATVYGDNPKIPYVESF 140

>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S + VYGD    P  ES+
Sbjct: 118 NFIFSSAATVYGDNPKIPYVESF 140

>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S + VYGD    P  ES+
Sbjct: 118 NFIFSSVATVYGDNPKIPYVESF 140

>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 15/134 (11%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG---SKDNLRKWIGHPRFELIRHDV 90
           RIL+TGGAGFIG HL   L+ +   EV V+D+         +   K++  P  EL   D+
Sbjct: 9   RILITGGAGFIGGHLARALVAS-GEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDL 67
Query: 91  TEPLLIEVDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
           +     +V  +YHLA   S P  +K  P+  +  NV    ++L L   VG  ++++ ST 
Sbjct: 68  S-----DVRLVYHLASHKSVPRSFK-QPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTC 120
Query: 149 EVYG--DPLVHPQD 160
           EVYG  D L  P+D
Sbjct: 121 EVYGQADTLPTPED 134

>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MR+LVTGGAGFIGSH+V+ L+     EV V+DN  TG ++N+ K +   R +L   +  E
Sbjct: 1   MRVLVTGGAGFIGSHIVEDLLAR-GLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVE 59
Query: 93  PLLIEV--DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS-- 148
               E     + H A  AS      +PV   + N++G LN+L   ++ G   L+ +++  
Sbjct: 60  RAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGG 119
Query: 149 EVYGDPLVHPQDESYW 164
            +YG+     + E  W
Sbjct: 120 AIYGEVPEGERAEETW 135

>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 16/160 (10%)
Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW-------IGHPRFELIR 87
           +LVTGGAG+IGSH V +L+EN   + +V DN    + D++ +        I     +L  
Sbjct: 14  VLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD 72
Query: 88  HDVTEPLLIE--VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILL 144
               E +  E  +D + H A   +       P++    N++GT+ +L L ++   ++ + 
Sbjct: 73  RKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVF 132
Query: 145 TSTSEVYGDPLVHPQ-----DESYWGNVNPIGMFSFVLKD 179
           +S++ VYGD    P      +E   G  NP G   + +++
Sbjct: 133 SSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIEN 172

>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---FTGSK---DNLRK-------WIGH 80
           ++LVTGGAG+IGSH V +L+E     V V+DN+   F G     ++LR+        +  
Sbjct: 4   KVLVTGGAGYIGSHTVLELLEAGYLPV-VIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 81  PRFELIRHDVTEPLLIEVD--QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
              +++     + L  +     + H A   +       P+   + N+ GT+ +L + K  
Sbjct: 63  EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 139 GAR-ILLTSTSEVYGDPLVHPQDESY--WGNVNPIGMFSFVLKDGIMKLI 185
           G + ++ +S++ VYG+P   P DE++   G  NP G   F +++ I  L 
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLC 172

>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---FTGSK---DNLRK-------WIGH 80
           ++LVTGGAG+IGSH V +L+E     V V+DN+   F G     ++LR+        +  
Sbjct: 4   KVLVTGGAGYIGSHTVLELLEAGYLPV-VIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 81  PRFELIRHDVTEPLLIEVD--QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
              +++     + L  +     + H A   +       P+   + N+ GT+ +L + K  
Sbjct: 63  EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 139 GAR-ILLTSTSEVYGDPLVHPQDESY--WGNVNPIGMFSFVLKDGIMKLI 185
           G + ++ +S++ VYG+P   P DE++   G  NP G   F +++ I  L 
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLC 172

>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---FTGSK---DNLRK-------WIGH 80
           ++LVTGGAG+IGSH V +L+E     V V+DN+   F G     ++LR+        +  
Sbjct: 4   KVLVTGGAGYIGSHTVLELLEAGYLPV-VIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 81  PRFELIRHDVTEPLLIEVD--QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
              +++     + L  +     + H A   +       P+   + N+ GT+ +L + K  
Sbjct: 63  EEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 139 GAR-ILLTSTSEVYGDPLVHPQDESY--WGNVNPIGMFSFVLKDGIMKLI 185
           G + ++ +S++ VYG+P   P DE++   G  NP G   F +++ I  L 
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLC 172

>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 19/130 (14%)
Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           +MR L+TG AGF+G +L + L E +  EV      F  S++N  K    P  E+I  D+ 
Sbjct: 12  SMRALITGVAGFVGKYLANHLTE-QNVEV------FGTSRNNEAKL---PNVEMISLDIM 61
Query: 92  EPLL-------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK--RVGARI 142
           +          I+ D I+HLA  +S      N   T  TNV GTL++L   +   +  RI
Sbjct: 62  DSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRI 121
Query: 143 LLTSTSEVYG 152
           L   +SE YG
Sbjct: 122 LTIGSSEEYG 131

>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia Pseudomallei Length = 372

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
           ++L+ G  GFIG HL  +++E    EV  +D       D L   + H R      D+T  
Sbjct: 26  KVLILGVNGFIGHHLSKRILETTDWEVFGMDM----QTDRLGDLVKHERMHFFEGDITIN 81
Query: 92  ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
               E  + + D I  L   A+P  Y   P++  + +    L ++  A + G  ++  ST
Sbjct: 82  KEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPST 141
Query: 148 SEVYG 152
           SEVYG
Sbjct: 142 SEVYG 146

>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK----WIGHPRFELIRHDV 90
           IL+ GGAG+IGSH V KL++ E   V+VVDN  TG +D + +    + G  R +    DV
Sbjct: 4   ILICGGAGYIGSHAVKKLVD-EGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDV 62
Query: 91  TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE 149
                IE   + H A  +        P++    NV G L +L +       + + +ST+ 
Sbjct: 63  FTQENIEA--VMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAA 120
Query: 150 VYGD 153
            YG+
Sbjct: 121 TYGE 124

>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 22/138 (15%)
Query: 36  LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
           L+TG AGFIGS+L++ L++ ++ +V+ +DN+ TG + NL         ++W     F+ I
Sbjct: 31  LITGVAGFIGSNLLETLLKLDQ-KVVGLDNFATGHQRNLDEVRSLVSEKQW---SNFKFI 86
Query: 87  RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           + D+            VD + H A   S      +P+ +  TN+ G LNML  A+    +
Sbjct: 87  QGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ 146
Query: 142 -ILLTSTSEVYGDPLVHP 158
                ++S  YGD   HP
Sbjct: 147 SFTYAASSSTYGD---HP 161

>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 20/157 (12%)
Query: 36  LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
           L+TG AGFIGS+L++KL++  +  VI +DN+ TG + NL          +W    RF  I
Sbjct: 42  LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 97
Query: 87  RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
             D+      E ++  VD + H A   S      +P+ T  TN+ G LN+L  AK    +
Sbjct: 98  EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 157
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGN-VNPIGMFSFV 176
                ++S  YGD    P+ E   GN ++P  +  +V
Sbjct: 158 SFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYV 194

>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 20/157 (12%)
Query: 36  LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
           L+TG AGFIGS+L++KL++  +  VI +DN+ TG + NL          +W    RF  I
Sbjct: 29  LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 84
Query: 87  RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
             D+      E ++  VD + H A   S      +P+ T  TN+ G LN+L  AK    +
Sbjct: 85  EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 144
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGN-VNPIGMFSFV 176
                ++S  YGD    P+ E   GN ++P  +  +V
Sbjct: 145 SFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYV 181

>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 20/157 (12%)
Query: 36  LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
           L+TG AGFIGS+L++KL++  +  VI +DN+ TG + NL          +W    RF  I
Sbjct: 29  LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 84
Query: 87  RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
             D+      E ++  VD + H A   S      +P+ T  TN+ G LN+L  AK    +
Sbjct: 85  EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 144
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGN-VNPIGMFSFV 176
                ++S  YGD    P+ E   GN ++P  +  +V
Sbjct: 145 SFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYV 181

>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 20/157 (12%)
Query: 36  LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
           L+TG AGFIGS+L++KL++  +  VI +DN+ TG + NL          +W    RF  I
Sbjct: 23  LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 78
Query: 87  RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
             D+      E ++  VD + H A   S      +P+ T  TN+ G LN+L  AK    +
Sbjct: 79  EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 138
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGN-VNPIGMFSFV 176
                ++S  YGD    P+ E   GN ++P  +  +V
Sbjct: 139 SFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYV 175

>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase Length = 397

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 29/152 (19%)
Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT--GSKDNLRKWIGHPRFELIRH 88
           S+MR+LV GGAG+IGSH V  L+ +  + V++VD+     G  D++       R +L + 
Sbjct: 1   SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVAR-KLQQS 59
Query: 89  DVTEPLLIE-------------------------VDQIYHLACPASPIFYKYNPVKTIKT 123
           D  +P   +                         +D + H+    +      +P+K    
Sbjct: 60  DGPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDN 119
Query: 124 NVIGTLNML-GLAKRVGARILLTSTSEVYGDP 154
           NV+G L +L  +      +I+ +S++ ++G+P
Sbjct: 120 NVVGILRLLQAMLLHKCDKIIFSSSAAIFGNP 151

>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase In Complex With Nadph And Udp-Glcnac Length = 344

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 5/129 (3%)
Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           N  IL+TGG G  G   V K+++    + I+V +     +  +      PR      DV 
Sbjct: 21  NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVR 80
Query: 92  EP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
           +       L  VD   H A        +YNP++ IKTN++G  N++    +     ++  
Sbjct: 81  DLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIAL 140
Query: 147 TSEVYGDPL 155
           +++   +P+
Sbjct: 141 STDKAANPI 149

>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           ++ +TG  G IGSH+ + L+E   ++V+ +DN+ TG +++L+    HP    +   + + 
Sbjct: 23  KVFITGICGQIGSHIAELLLE-RGDKVVGIDNFATGRREHLKD---HPNLTFVEGSIADH 78
Query: 94  LLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILL 144
            L+       + D + H A         YN      TN +G  N++  AK+  VG R + 
Sbjct: 79  ALVNQLIGDLQPDAVVHTAASYKDPDDWYN---DTLTNCVGGSNVVQAAKKNNVG-RFVY 134
Query: 145 TSTSEVYG-DPLVHP 158
             T+  YG  P+  P
Sbjct: 135 FQTALCYGVKPIQQP 149

>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella Typhi Length = 359

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 22/127 (17%)
Query: 27  KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS------------KDNL 74
           K F    R+ VTG  GF GS L   L E       +V  Y   +             D +
Sbjct: 4   KNFWQGKRVFVTGHTGFKGSWLSLWLTEMGA----IVKGYALDAPTVPSLFEIVRLNDLM 59
Query: 75  RKWIGHPR-FELIRHDVTEPLLIEVDQIYHLAC-PASPIFYKYNPVKTIKTNVIGTLNML 132
              IG  R FE +R  + E    + + ++H+A  P   + Y+  P+KT  TNV+GT+++L
Sbjct: 60  ESHIGDIRDFEKLRSSIAE---FKPEIVFHMAAQPLVRLSYE-QPIKTYSTNVMGTVHLL 115
Query: 133 GLAKRVG 139
              K+VG
Sbjct: 116 ETVKQVG 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	3e-93
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	2e-84
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	2e-80
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	5e-74
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	1e-71
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	5e-61
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	3e-54
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	5e-40
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	7e-39
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	7e-38
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	7e-36
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	3e-35
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	5e-35
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	1e-33
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	2e-33
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	9e-33
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	1e-32
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	2e-32
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	5e-32
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	6e-32
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	6e-31
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	2e-30
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	1e-29
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	1e-27
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	4e-27
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	3e-24
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	3e-24
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	1e-23
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	4e-23
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	2e-22
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	3e-22
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	1e-21
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	7e-19
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	8e-18
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	1e-16
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	2e-16
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	6e-15
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	2e-13
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	2e-13
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	4e-13
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	1e-12
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	3e-12
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	2e-11
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	3e-11
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	5e-11
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	1e-10
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	2e-10
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	8e-10
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	7e-09
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	1e-08
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	4e-08
1xq6_A	253	Unknown protein; structural genomics, protein stru	8e-07
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	1e-06
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	1e-06
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	2e-06
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	8e-06
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	2e-05
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	2e-05
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	2e-05
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	2e-05
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	5e-05
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	7e-05
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	1e-04
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	1e-04
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	2e-04
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	4e-04

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343

 Score =  274 bits (702), Expect = 3e-93
 Identities = 109/166 (65%), Positives = 123/166 (74%), Gaps = 4/166 (2%)

Query: 6   SNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65
           S+ +H+ +S            K      RIL+TGGAGF+GSHL DKLM  + +EV VVDN
Sbjct: 4   SHHHHHHSSGRENLYFQGHMEK---DRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDN 59

Query: 66  YFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNV 125
           +FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN 
Sbjct: 60  FFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNT 119

Query: 126 IGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
           IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct: 120 IGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIG 165

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345

 Score =  251 bits (644), Expect = 2e-84
 Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 11/146 (7%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
           MR+L+ G  GFIG+HL ++L+  +  EV  +D       D + +++ HP F  +  D++ 
Sbjct: 1   MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEGDISI 56

Query: 92  -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
                E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  S
Sbjct: 57  HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116

Query: 147 TSEVYGDPLVHPQDESYWG-NVNPIG 171
           TSEVYG       DE +    V P+ 
Sbjct: 117 TSEVYGMCSDKYFDEDHSNLIVGPVN 142

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372

 Score =  242 bits (620), Expect = 2e-80
 Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 19/175 (10%)

Query: 6   SNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65
            + +H+  +    T  P           ++L+ G  GFIG HL  +++E   +  +   +
Sbjct: 3   HHHHHHMGTLEAQTQGPGSMKA-----KKVLILGVNGFIGHHLSKRILE-TTDWEVFGMD 56

Query: 66  YFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVK 119
             T    +L   + H R      D+T      E  + + D I  L   A+P  Y   P++
Sbjct: 57  MQTDRLGDL---VKHERMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLR 113

Query: 120 TIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESY-WGNVNPI 170
             + +    L ++  A + G  ++  STSEVYG   D    P   +  +G +N  
Sbjct: 114 VFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKP 168

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379

 Score =  226 bits (578), Expect = 5e-74
 Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 12/174 (6%)

Query: 6   SNGNHNSASKPPPTPSPLRFSKFF-QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD 64
           + G  N       T   L   +++   N++I +TG  GFI SH+  +L   E + VI  D
Sbjct: 2   AMGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKH-EGHYVIASD 60

Query: 65  NYFTGSKDNLRKWIGHPRFELIRHDVTE---PLLIEVDQIYHLACPASPI-FYKYNPVKT 120
                  +++ + +    F L+   V E    +   VD +++LA     + F + N    
Sbjct: 61  ---WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVI 117

Query: 121 IKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVHPQDESY--WGNVNPIG 171
           +  N + + NM+  A+  G  R    S++ +Y +              +  P  
Sbjct: 118 MYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAE 171

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377

 Score =  220 bits (562), Expect = 1e-71
 Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 14/196 (7%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           M     + +H+S   P  +  P+  +    +N  ++V GGAGF+GS+LV +L+E   N+V
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-----EVDQIYHLACPASPIFYKY 115
            VVDN  +  K N+     HP        +T+  L+     E D ++HLA         +
Sbjct: 61  HVVDNLLSAEKINVP---DHPAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIH 117

Query: 116 NPVKTIKTNVIGTLNMLGLA---KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGM 172
           +P+   + N + TL +       KR+   +   +   +        +       V+    
Sbjct: 118 DPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNN 177

Query: 173 FSFVLKDGIMKLIGEL 188
            S      + K+ GE 
Sbjct: 178 DSPY---SMSKIFGEF 190

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321

 Score =  191 bits (487), Expect = 5e-61
 Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 16/145 (11%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR---KWIGHPRFELIR 87
              RIL+TGGAGFIG HL   L+     EV V+D+             K++  P  EL  
Sbjct: 6   LKHRILITGGAGFIGGHLARALVA-SGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEE 64

Query: 88  HDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
            D++     +V  +YHLA   S       P+  +  NV    ++L L   VG  ++++ S
Sbjct: 65  RDLS-----DVRLVYHLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCTSVGVPKVVVGS 118

Query: 147 TSEVYGDPLVHPQDESYWGNVNPIG 171
           T EVYG     P  E      +P+ 
Sbjct: 119 TCEVYGQADTLPTPED-----SPLS 138

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312

 Score =  173 bits (442), Expect = 3e-54
 Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 12/142 (8%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MRI+VTGGAGFIGSHLVDKL+E    EV+VVDN  +G ++ +     +P  EL   D+ +
Sbjct: 1   MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKD 54

Query: 93  PLL---IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
                 I+ D ++H A           P+     NV+ T N+L  A++ G   ++  S+S
Sbjct: 55  YSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSS 114

Query: 149 EVYGDPLVHPQDESYWGNVNPI 170
            VYGD  V P  E       PI
Sbjct: 115 TVYGDADVIPTPEEE--PYKPI 134

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313

 Score =  137 bits (347), Expect = 5e-40
 Identities = 50/144 (34%), Positives = 82/144 (56%), Gaps = 16/144 (11%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
             I+VTGGAGFIGSH+VDKL E+  NE++V+DN  +G+++ +     +    L++ D+  
Sbjct: 2   SLIVVTGGAGFIGSHVVDKLSES--NEIVVIDNLSSGNEEFV-----NEAARLVKADLAA 54

Query: 93  PLLIE----VDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
             + +     ++++H+A      I  + NP +  + NV+ T  +L   ++ G  RI+ TS
Sbjct: 55  DDIKDYLKGAEEVWHIAANPDVRIGAE-NPDEIYRNNVLATYRLLEAMRKAGVSRIVFTS 113

Query: 147 TSEVYGDPLVHPQDESYWGNVNPI 170
           TS VYG+  V P  E Y    +PI
Sbjct: 114 TSTVYGEAKVIPTPEDY--PTHPI 135

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311

 Score =  134 bits (339), Expect = 7e-39
 Identities = 33/141 (23%), Positives = 51/141 (36%), Gaps = 20/141 (14%)

Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           +++I VTGG GF+G ++V+ +   + N  I++         N         +E    D T
Sbjct: 2   SLKIAVTGGTGFLGQYVVESIKN-DGNTPIILTRSIGNKAIND--------YEYRVSDYT 52

Query: 92  EPLLIE----VDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLT 145
              LI     VD + HLA             +     N I T N+         + I+  
Sbjct: 53  LEDLINQLNDVDAVVHLAATRGSQ-----GKISEFHDNEILTQNLYDACYENNISNIVYA 107

Query: 146 STSEVYGDPLVHPQDESYWGN 166
           ST   Y D    P +E     
Sbjct: 108 STISAYSDETSLPWNEKELPL 128

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352

 Score =  132 bits (334), Expect = 7e-38
 Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 13/170 (7%)

Query: 9   NHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68
           +H+  S    +       +        L+TG AGFIGS+L++ L++    +V+ +DN+ T
Sbjct: 4   HHHHGSMGMMSRYEELRKELPAQPKVWLITGVAGFIGSNLLETLLK-LDQKVVGLDNFAT 62

Query: 69  GSKDNLRKW------IGHPRFELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKYNP 117
           G + NL +            F+ I+ D+            VD + H A   S      +P
Sbjct: 63  GHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDP 122

Query: 118 VKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166
           + +  TN+ G LNML  A+          ++S  YGD    P+ E   G 
Sbjct: 123 ITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGK 172

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362

 Score =  127 bits (321), Expect = 7e-36
 Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 28/174 (16%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNL--------RKWIGHP 81
            N  IL+TGGAGF+GS+L     E + K +V+V+D + + +  +          K +   
Sbjct: 9   ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGF 68

Query: 82  RFELIRHDVTEPLLIE------VDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
           + E+I  D+  PL +        D ++H  A   + +    N    +KTN    LN+L +
Sbjct: 69  KGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTM---LNQELVMKTNYQAFLNLLEI 125

Query: 135 AKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
           A+   A+++  S++ VYG+    P       N +P  ++      G  KL  + 
Sbjct: 126 ARSKKAKVIYASSAGVYGNTKA-PNVVGK--NESPENVY------GFSKLCMDE 170

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660

 Score =  129 bits (326), Expect = 3e-35
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 11/151 (7%)

Query: 29  FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH 88
            +   R+L+ G  GFIG+HL ++L+  +  EV  +D       D + +++ HP F  +  
Sbjct: 312 ARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEG 367

Query: 89  DVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARI 142
           D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI
Sbjct: 368 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI 427

Query: 143 LLTSTSEVYGDPLVHPQDESYWGNV-NPIGM 172
           +  STSEVYG       DE +   +  P+  
Sbjct: 428 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK 458

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333

 Score =  124 bits (314), Expect = 5e-35
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 20/148 (13%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
            ++ +TG  G IGSH+ + L+E   ++V+ +DN+ TG +++L+    HP    +   + +
Sbjct: 22  KKVFITGICGQIGSHIAELLLE-RGDKVVGIDNFATGRREHLK---DHPNLTFVEGSIAD 77

Query: 93  PLLIE-------VDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RIL 143
             L+         D + H A     P     +      TN +G  N++  AK+    R +
Sbjct: 78  HALVNQLIGDLQPDAVVHTAASYKDP----DDWYNDTLTNCVGGSNVVQAAKKNNVGRFV 133

Query: 144 LTSTSEVYGD-PLVHPQDESYWGNVNPI 170
              T+  YG  P+  P    +    NP 
Sbjct: 134 YFQTALCYGVKPIQQPVRLDH--PRNPA 159

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351

 Score =  121 bits (305), Expect = 1e-33
 Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 19/148 (12%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW------IGHPRF 83
            S    L+TG AGFIGS+L++KL++     VI +DN+ TG + NL +           RF
Sbjct: 23  FSPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRF 81

Query: 84  ELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKY---NPVKTIKTNVIGTLNMLGLA 135
             I  D+ +    E     VD + H A   S         +P+ T  TN+ G LN+L  A
Sbjct: 82  CFIEGDIRDLTTCEQVMKGVDHVLHQAALGS---VPRSIVDPITTNATNITGFLNILHAA 138

Query: 136 KRVGA-RILLTSTSEVYGDPLVHPQDES 162
           K          ++S  YGD    P+ E 
Sbjct: 139 KNAQVQSFTYAASSSTYGDHPALPKVEE 166

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357

 Score =  120 bits (304), Expect = 2e-33
 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 18/164 (10%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHD 89
               I+VTGGAGFIGS++V  L +    +++VVDN   G+K  NL     +    + + D
Sbjct: 45  EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL--NIADYMDKED 102

Query: 90  VTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL 144
               ++       V+ I+H    +S   +    +  +  N   +  +L          L 
Sbjct: 103 FLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCLEREIPFLY 160

Query: 145 TSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
            S++  YG       +        P+ +F      G  K + + 
Sbjct: 161 ASSAATYGGRTSDFIESRE--YEKPLNVF------GYSKFLFDE 196

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310

 Score =  118 bits (297), Expect = 9e-33
 Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 20/161 (12%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEP 93
           I+VTGGAGFIGS++V  L +    +++VVDN   G+K  NL     +    + + D    
Sbjct: 2   IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD--LNIADYMDKEDFLIQ 59

Query: 94  LLIE-----VDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
           ++       V+ I+H  AC ++    +++    +  N   +  +L          L  S+
Sbjct: 60  IMAGEEFGDVEAIFHEGACSSTT---EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASS 116

Query: 148 SEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
           +  YG       +        P+ +       G  K + + 
Sbjct: 117 AATYGGRTSDFIESR--EYEKPLNV------YGYSKFLFDE 149

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369

 Score =  119 bits (299), Expect = 1e-32
 Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 23/122 (18%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M I++TG  GF+G +L   L     + +  V       ++ L   +              
Sbjct: 1   MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTK--EEELESALL------------- 45

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
               + D I HLA    P     +  +    NV    ++L +  R   +  +  +S +  
Sbjct: 46  ----KADFIVHLAGVNRPE----HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQA 97

Query: 153 DP 154
             
Sbjct: 98  TQ 99

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342

 Score =  117 bits (296), Expect = 2e-32
 Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 32/178 (17%)

Query: 29  FQSNMRILVTGGAGFIGSHLVDKLME------NEKNEVIVVDNYFTGSKDNLRKWIGHPR 82
           +   M I + G AG +G  L  +L++          +  ++D +   +            
Sbjct: 11  YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGF-----SGA 65

Query: 83  FELIRHDVTEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
            +    D++ P   E       D I+HLA   S      +  K  + N+ GT  +    +
Sbjct: 66  VDARAADLSAPGEAEKLVEARPDVIFHLAAIVSGEAEL-DFDKGYRINLDGTRYLFDAIR 124

Query: 137 RVGA------RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
                     R++ TS+  V+G PL +P  + +     P+  +      G  K I EL
Sbjct: 125 IANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFH--TTPLTSY------GTQKAICEL 174

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267

 Score =  115 bits (289), Expect = 5e-32
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           R+LVTG AG +GS +   L     +EV + D    G+ +           E++  D+ + 
Sbjct: 4   RLLVTGAAGGVGSAIRPHLGT-LAHEVRLSDIVDLGAAEAH--------EEIVACDLADA 54

Query: 94  LLIE-----VDQIYHLACPASPIFYKYNPV-KTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
             +       D I HL   +        P    ++ N+IG  N+   A+ +G  RI+  S
Sbjct: 55  QAVHDLVKDCDGIIHLGGVSVE-----RPWNDILQANIIGAYNLYEAARNLGKPRIVFAS 109

Query: 147 TSEVYGD-PLVHPQDESY 163
           ++   G  P     D   
Sbjct: 110 SNHTIGYYPRTTRIDTEV 127

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330

 Score =  116 bits (293), Expect = 6e-32
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 23/144 (15%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           S+MRIL+TGGAG +GS+L++  +  + +E++V+DN+ TG ++ L          +I   V
Sbjct: 19  SHMRILITGGAGCLGSNLIEHWLP-QGHEILVIDNFATGKREVLPP---VAGLSVIEGSV 74

Query: 91  TEPLLIE-------VDQIYHLA----CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
           T+  L+E          + H A     P                NV G++N+   A + G
Sbjct: 75  TDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAAT-------NVQGSINVAKAASKAG 127

Query: 140 A-RILLTSTSEVYGDPLVHPQDES 162
             R+L   T+  YG P   P    
Sbjct: 128 VKRLLNFQTALCYGRPATVPIPID 151

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317

 Score =  113 bits (285), Expect = 6e-31
 Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 27/163 (16%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           ILVTG +G IG+ LV  L E    + ++  +                  + I  DV+   
Sbjct: 2   ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRD---------TGGIKFITLDVSNRD 52

Query: 95  LIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
            I+       +D I+HLA   S    K +P    K N+ GT N+L  AK+    ++++ S
Sbjct: 53  EIDRAVEKYSIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRVEKVVIPS 111

Query: 147 TSEVYGDPL-VHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
           T  V+G     +           P  MF      G+ K+  EL
Sbjct: 112 TIGVFGPETPKNKVPSITI--TRPRTMF------GVTKIAAEL 146

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312

 Score =  111 bits (281), Expect = 2e-30
 Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 22/165 (13%)

Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           N +IL+ G  G IG+ L  KL +    E ++  +    + D +              +  
Sbjct: 2   NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNS------GPFEVVNAL 55

Query: 92  EPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARIL 143
           +   IE       +  IY +A   S    + NP      N+    ++L LAK     +I 
Sbjct: 56  DFNQIEHLVEVHKITDIYLMAALLSAT-AEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIF 114

Query: 144 LTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
             S+  V+G          Y   + P  ++      GI K  GE 
Sbjct: 115 WPSSIAVFGPTTPKENTPQY-TIMEPSTVY------GISKQAGER 152

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311

 Score =  109 bits (276), Expect = 1e-29
 Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 24/144 (16%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MR+LVTGGAGFIGSH+V+ L+     EV V+DN  TG ++N+            R D+ +
Sbjct: 1   MRVLVTGGAGFIGSHIVEDLLA-RGLEVAVLDNLATGKRENV-----PKGVPFFRVDLRD 54

Query: 93  PLLIE-------VDQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA- 140
              +E          + H A       S      +PV   + N++G LN+L   ++ G  
Sbjct: 55  KEGVERAFREFRPTHVSHQAAQASVKVSVE----DPVLDFEVNLLGGLNLLEACRQYGVE 110

Query: 141 RILLTSTSE-VYGD-PLVHPQDES 162
           +++  ST   +YG+ P     +E+
Sbjct: 111 KLVFASTGGAIYGEVPEGERAEET 134

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267

 Score =  103 bits (259), Expect = 1e-27
 Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 20/140 (14%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           +  R+LVTG AG +G  + ++L      E++ + +               P  E ++ D+
Sbjct: 2   AMKRLLVTGAAGQLGRVMRERLA--PMAEILRLADLSPLDPA-------GPNEECVQCDL 52

Query: 91  TEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL 144
            +      ++   D I HL   +          + ++ N+IG  N+   A+  G  RI+ 
Sbjct: 53  ADANAVNAMVAGCDGIVHLGGISVE----KPFEQILQGNIIGLYNLYEAARAHGQPRIVF 108

Query: 145 TSTSEVYGD-PLVHPQDESY 163
            S++   G  P         
Sbjct: 109 ASSNHTIGYYPQTERLGPDV 128

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347

 Score =  103 bits (260), Expect = 4e-27
 Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 25/160 (15%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN-YFTGSKDNLRKWIGHPRFELIRHDVT 91
            ++L+TGG GF+GS+L    +     ++IV DN    G+ DNL        FE +  D+ 
Sbjct: 2   AKLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIR 60

Query: 92  EPLLIE-------VDQIYHLACPA------SPIFYKYNPVKTIKTNVIGTLNMLGLAKR- 137
               +         D  +HLA         S I    NP    + NV GTLN+L   ++ 
Sbjct: 61  NKNDVTRLITKYMPDSCFHLA--GQVAMTTS-I---DNPCMDFEINVGGTLNLLEAVRQY 114

Query: 138 -VGARILLTSTSEVYGD--PLVHPQDESYWGNVNPIGMFS 174
                I+ +ST++VYGD     + + E+ +  V+    + 
Sbjct: 115 NSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYD 154

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404

 Score = 96.8 bits (241), Expect = 3e-24
 Identities = 36/166 (21%), Positives = 56/166 (33%), Gaps = 36/166 (21%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN---------------- 73
               R++V GG G+ G      L +    EV +VDN      D+                
Sbjct: 9   HHGSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDR 67

Query: 74  LRKW--IGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASP-----IFYKYNPVK 119
           + +W  +     EL   D+ +   +         D + H            +  +   V 
Sbjct: 68  ISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFG--EQRSAPYSMIDRSRAVY 125

Query: 120 TIKTNVIGTLNMLGLAKR--VGARILLTSTSEVYGDPLVHPQDESY 163
           T   NVIGTLN+L   K       ++   T   YG P +   +E Y
Sbjct: 126 TQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIEEGY 170

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337

 Score = 96.0 bits (240), Expect = 3e-24
 Identities = 49/144 (34%), Positives = 66/144 (45%), Gaps = 34/144 (23%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKN-----EVIVVDN--YFTGSKDNLRKWIGHPRFEL 85
           MR+LVTGGAGFIGSH V +L+          EVIV+D+  Y  G++ NL      PR   
Sbjct: 1   MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTY-AGNRANLAPVDADPRLRF 59

Query: 86  IRHDVT-----EPLLIEVDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLN 130
           +  D+         L  VD I H A            +  +F         +TNV GT  
Sbjct: 60  VHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGAS--VF--------TETNVQGTQT 109

Query: 131 MLGLAKRVGA-RILLTSTSEVYGD 153
           +L  A   G  R++  ST++VYG 
Sbjct: 110 LLQCAVDAGVGRVVHVSTNQVYGS 133

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336

 Score = 94.5 bits (236), Expect = 1e-23
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 31/143 (21%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDN--YFTGSKDNLRKWIGHPRFELIR 87
            +M++LVTGG GFIGS+ +  ++E   + EVI +D   Y   +  NL+     PR+  ++
Sbjct: 2   HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGY-GSNPANLKDLEDDPRYTFVK 60

Query: 88  HDVT-----EPLLIEVDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLNML 132
            DV      + L+ +VD + HLA           P   IF        + +NVIGT  +L
Sbjct: 61  GDVADYELVKELVRKVDGVVHLAAESHVDRSISSPE--IF--------LHSNVIGTYTLL 110

Query: 133 GLAKR--VGARILLTSTSEVYGD 153
              +R     R +  ST EVYGD
Sbjct: 111 ESIRRENPEVRFVHVSTDEVYGD 133

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348

 Score = 93.4 bits (233), Expect = 4e-23
 Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 32/160 (20%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDN--YFTGSKDNLRKWIGHPRFELIRHD 89
             I+VTGGAGFIGS+ V  +  N  +  V V+D   Y  G+K NL   I   R EL+  D
Sbjct: 5   KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTY-AGNKANLEA-ILGDRVELVVGD 62

Query: 90  VT-----EPLLIEVDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLNMLGL 134
           +      + L  + D I H A           P+   F        I TN IGT  +L  
Sbjct: 63  IADAELVDKLAAKADAIVHYAAESHNDNSLNDPS--PF--------IHTNFIGTYTLLEA 112

Query: 135 AKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           A++   R    ST EVYGD  +  +++       P   F+
Sbjct: 113 ARKYDIRFHHVSTDEVYGD--LPLREDLPGHGEGPGEKFT 150

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346

 Score = 91.4 bits (228), Expect = 2e-22
 Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 24/144 (16%)

Query: 27  KFFQSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDN--YFTGSKDNLRKWIGHPRF 83
            F  + M ILVTGGAGFIGS+ V  ++++ +  ++I  D   Y +G+ +N++    HP +
Sbjct: 19  YFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTY-SGNLNNVKSIQDHPNY 77

Query: 84  ELIRHDVTEPLLIE-------VDQIYHLACPA------SPIFYKYNPVKTIKTNVIGTLN 130
             ++ ++    L+E       V  I + A  A      S I    NP+    TNVIGT+ 
Sbjct: 78  YFVKGEIQNGELLEHVIKERDVQVIVNFA--AESHVDRS-I---ENPIPFYDTNVIGTVT 131

Query: 131 MLGLAKRVGA-RILLTSTSEVYGD 153
           +L L K+    +++  ST EVYG 
Sbjct: 132 LLELVKKYPHIKLVQVSTDEVYGS 155

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361

 Score = 90.7 bits (226), Expect = 3e-22
 Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 40/150 (26%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN--YFTGSKDNLRKWIGHPRFELIRHDV 90
           M+IL+TGGAGFIGS +V  +++N ++ V+ +D   Y  G+ ++L       R+     D+
Sbjct: 1   MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTY-AGNLESLSDISESNRYNFEHADI 59

Query: 91  TEPLLIE-------VDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLNML- 132
            +   I         D + HLA           PA   F        I+TN++GT  +L 
Sbjct: 60  CDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPA--AF--------IETNIVGTYALLE 109

Query: 133 ---------GLAKRVGARILLTSTSEVYGD 153
                    G  K+   R    ST EVYGD
Sbjct: 110 VARKYWSALGEDKKNNFRFHHISTDEVYGD 139

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342

 Score = 89.3 bits (222), Expect = 1e-21
 Identities = 18/146 (12%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           ++++  V G  G +G H    +     ++++++  +   S+    + + +   E    ++
Sbjct: 12  AHVKYAVLGATGLLGHHAARAIRA-AGHDLVLI--HRPSSQ---IQRLAYLEPECRVAEM 65

Query: 91  TEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL 144
            +   +E     +D +   A             + + + +  T        +    RIL 
Sbjct: 66  LDHAGLERALRGLDGVIFSAGYYP--SRPRRWQEEVASALGQTNPFYAACLQARVPRILY 123

Query: 145 TSTSEVYG-DPLVHPQDESYWGNVNP 169
             ++      P   P  E  + +  P
Sbjct: 124 VGSAYAMPRHPQGLPGHEGLFYDSLP 149

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330

 Score = 81.3 bits (202), Expect = 7e-19
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 26/144 (18%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
             IL+ GGAG+IGSH V KL++ E   V+VVDN  TG +D +         +    D+  
Sbjct: 2   NSILICGGAGYIGSHAVKKLVD-EGLSVVVVDNLQTGHEDAI-----TEGAKFYNGDLRD 55

Query: 92  EPLLIEV------DQIYHLACPASPIFYKY------NPVKTIKTNVIGTLNMLGLAKRVG 139
           +  L +V      + + H A                 P++    NV G L +L +     
Sbjct: 56  KAFLRDVFTQENIEAVMHFAA------DSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFK 109

Query: 140 A-RILLTSTSEVYGDPLVHPQDES 162
             + + +ST+  YG+  V    E 
Sbjct: 110 VDKFIFSSTAATYGEVDVDLITEE 133

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397

 Score = 78.9 bits (195), Expect = 8e-18
 Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 35/162 (21%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           S+MR+LV GGAG+IGSH V  L+ +  + V++VD+       +            ++   
Sbjct: 1   SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60

Query: 91  TEPL--------LIEVDQIYHLACPA--SPIFYKYNPVKTI------------------- 121
                       L   D    +      + +F ++ P+  +                   
Sbjct: 61  GPKPPWADRYAALEVGD----VRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKY 116

Query: 122 -KTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVHPQDE 161
              NV+G L +L         +I+ +S++ ++G+P +     
Sbjct: 117 YDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVST 158

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338

 Score = 75.2 bits (186), Expect = 1e-16
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 25/147 (17%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRHDV 90
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L   + +G      +  D+
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDI 59

Query: 91  TEPLLIE-------VDQIYHLAC-------PASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
               L+        +D + H A           P+ Y  N       NV GTL ++   +
Sbjct: 60  RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-------NVNGTLRLISAMR 112

Query: 137 RVGARILLTSTSE-VYGDPLVHPQDES 162
               +  + S+S  VYGD    P  ES
Sbjct: 113 AANVKNFIFSSSATVYGDNPKIPYVES 139

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341

 Score = 74.8 bits (185), Expect = 2e-16
 Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 26/159 (16%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRH 88
           +   ILVTGGAG+IGSH   +L+ +   +V++ DN     ++ +   + I          
Sbjct: 4   TKGTILVTGGAGYIGSHTAVELLAHG-YDVVIADNLVNSKREAIARIEKITGKTPAFHET 62

Query: 89  DVTEPLLIE-------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
           DV++   +        +    H A         A PI Y  N       N+   L++L +
Sbjct: 63  DVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRN-------NLDSLLSLLRV 115

Query: 135 AKRVGARILLTSTS-EVYGDPLVHPQDESY-WGNVNPIG 171
            +    + ++ S+S  VYG P   P DE++     NP G
Sbjct: 116 MRERAVKRIVFSSSATVYGVPERSPIDETFPLSATNPYG 154

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699

 Score = 71.3 bits (175), Expect = 6e-15
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 30/163 (18%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRH 88
           ++  +LVTGGAG+IGSH V +L+EN   + +V DN    + D++   + +          
Sbjct: 10  TSKIVLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEV 68

Query: 89  DVTEPLLIE-------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
           D+ +   +E       +D + H A           P+ Y Y        N++GT+ +L L
Sbjct: 69  DLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRY-Y------HNNILGTVVLLEL 121

Query: 135 AKRVGARILLTSTSE-VYGDPLVHPQ----DESY-WGNVNPIG 171
            ++      + S+S  VYGD    P      E    G  NP G
Sbjct: 122 MQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYG 164

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 20/142 (14%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +   +I++ G +GF+GS L+++ +     EV  V        + ++    +   ++ + D
Sbjct: 2   EKVKKIVLIGASGFVGSALLNEALN-RGFEVTAV----VRHPEKIKI--ENEHLKVKKAD 54

Query: 90  VTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RIL 143
           V+       +    D +     P        N        +   L ++   K+ G  R L
Sbjct: 55  VSSLDEVCEVCKGADAVISAFNPGW------NNPDIYDETIKVYLTIIDGVKKAGVNRFL 108

Query: 144 LTST-SEVYGDPLVHPQDESYW 164
           +      ++  P +   D    
Sbjct: 109 MVGGAGSLFIAPGLRLMDSGEV 130

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322

 Score = 66.1 bits (162), Expect = 2e-13
 Identities = 33/156 (21%), Positives = 53/156 (33%), Gaps = 31/156 (19%)

Query: 34  RILVTGGAGFIGSHLVDKLME-----------NEKNEVIVVDNYFTGSKDNLRKWIGHP- 81
           R+ VTGG GF+GS ++  L+E           + + +  V           L    G   
Sbjct: 3   RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDV---------SFLTNLPGASE 53

Query: 82  RFELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
           +      D++ P      +     I+H A P              K  V G L +L    
Sbjct: 54  KLHFFNADLSNPDSFAAAIEGCVGIFHTASP-IDFAVSEPEEIVTKRTVDGALGILKACV 112

Query: 137 RVGA--RILLTST--SEVYGDPLVHPQDESYWGNVN 168
                 R + TS+  +  +        DES W +V+
Sbjct: 113 NSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVD 148

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348

 Score = 65.6 bits (161), Expect = 4e-13
 Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 33/155 (21%)

Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-----FTGSK----DNLRKWIGHPR 82
             ++LVTGGAG+IGSH V +L+E      +V+DN+       GS       +++  G   
Sbjct: 2   AEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGR-S 59

Query: 83  FELIRHDVTEPLLIE-------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGT 128
            E    D+ +   ++          + H A           P+ Y          N+ GT
Sbjct: 60  VEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRV-------NLTGT 112

Query: 129 LNMLGLAKRVGARILLTSTSE-VYGDPLVHPQDES 162
           + +L + K  G + L+ S+S  VYG+P   P DE+
Sbjct: 113 IQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEA 147

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321

 Score = 63.7 bits (156), Expect = 1e-12
 Identities = 45/149 (30%), Positives = 65/149 (43%), Gaps = 31/149 (20%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRH 88
             +MR L+TG AGF+G +L + L   E+N EV        G+          P  E+I  
Sbjct: 10  HGSMRALITGVAGFVGKYLANHLT--EQNVEVF-------GTS--RNNEAKLPNVEMISL 58

Query: 89  DVTEP-----LLIEV--DQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNMLGLAKR 137
           D+ +      ++ ++  D I+HLA       S  +   N   T  TNV GTL++L   + 
Sbjct: 59  DIMDSQRVKKVISDIKPDYIFHLAAKSSVKDS--W--LNKKGTFSTNVFGTLHVLDAVRD 114

Query: 138 VG--ARILLTSTSEVYGDPLVH--PQDES 162
                RIL   +SE YG  L    P  E 
Sbjct: 115 SNLDCRILTIGSSEEYGMILPEESPVSEE 143

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338

 Score = 63.0 bits (154), Expect = 3e-12
 Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 31/156 (19%)

Query: 34  RILVTGGAGFIGSHLVDKLME----------NEKNEVIVVDNYFTGSKDNLRKWIGHPRF 83
              V GG GF+ S LV  L++          +  N+  V          +L +       
Sbjct: 11  TACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKV---------SHLLELQELGDL 61

Query: 84  ELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
           ++ R D+T+       +   D ++H+A P      +      IK  + G +N++    R 
Sbjct: 62  KIFRADLTDELSFEAPIAGCDFVFHVATPV-HFASEDPENDMIKPAIQGVVNVMKACTRA 120

Query: 139 GA--RILLT-STSEVYGDPLVHPQ---DESYWGNVN 168
            +  R++LT S + V  + L       DE  W ++ 
Sbjct: 121 KSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIE 156

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 37/162 (22%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-------TGSKDNLRKWIGHP-- 81
               +LVTG  GF+ SH+V++L+E+          Y             NL+K       
Sbjct: 10  EGSLVLVTGANGFVASHVVEQLLEH---------GYKVRGTARSASKLANLQKRWDAKYP 60

Query: 82  -RFE-LIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
            RFE  +  D+ +      ++     + H+   AS + +     + +   + GTLN L  
Sbjct: 61  GRFETAVVEDMLKQGAYDEVIKGAAGVAHI---ASVVSFSNKYDEVVTPAIGGTLNALRA 117

Query: 135 AKRVGA--RILLT-STSEVYGDPLVHPQ---DESYWGNVNPI 170
           A    +  R +LT ST               DE  W   N  
Sbjct: 118 AAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSW---NLE 156

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 32/159 (20%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLME----------NEKNEVIVVDNY-FTGSKDNLRKWIG 79
            +  + VTG +GFIGS LV +L+E          +  N   V        ++ +L     
Sbjct: 4   QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHL----- 58

Query: 80  HPRFELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVK-TIKTNVIGTLNMLG 133
                L + D+ +       +     ++H+A P    F   +P    IK  + G L ++ 
Sbjct: 59  ----TLWKADLADEGSFDEAIKGCTGVFHVATPM--DFESKDPENEVIKPTIEGMLGIMK 112

Query: 134 LAKRVGA--RILLTST--SEVYGDPLVHPQDESYWGNVN 168
                    R++ TS+  +    +  +   DES W ++ 
Sbjct: 113 SCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDME 151

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478

 Score = 59.5 bits (144), Expect = 5e-11
 Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 44/173 (25%)

Query: 10  HNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENE--KNEVI------ 61
             + + P P+P              +L+TG  GF+G +LV +L+        +I      
Sbjct: 61  ATAVNLPGPSPEL----------RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAE 110

Query: 62  --------VVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEP-----------LLIEVDQ 100
                   +   + +G  + LR +  +   R E++  D +EP           L   VD 
Sbjct: 111 SDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDL 170

Query: 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYG 152
           I   A  A    + Y   +    NV GT  ++ +A           ST++V  
Sbjct: 171 IVDSA--AMVNAFPY--HELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGA 219

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364

 Score = 58.6 bits (141), Expect = 1e-10
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 20/135 (14%)

Query: 36  LVTGGAGFIGSHLVDKL----MENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           L+ G  G IG+ L + L          +V  V      ++     W        ++ D++
Sbjct: 5   LIVGVTGIIGNSLAEILPLADTPGGPWKVYGV------ARRTRPAWHEDNPINYVQCDIS 58

Query: 92  EP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RIL 143
           +P      L  +  + H+         +    +  + N     N+L            I 
Sbjct: 59  DPDDSQAKLSPLTDVTHVFYVTWAN--RSTEQENCEANSKMFRNVLDAVIPNCPNLKHIS 116

Query: 144 LTSTSEVYGDPLVHP 158
           L +  + Y  P    
Sbjct: 117 LQTGRKHYMGPFESY 131

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 24/141 (17%)

Query: 22  PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-----NLRK 76
            +   +    N  IL+TGG G  G   V K+++    + I+V   +  S+D      +  
Sbjct: 11  SMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIV---Y--SRDELKQSEMAM 65

Query: 77  WIGHPRFELIRHDV-----TEPLLIEVDQIYHLAC----PASPIFYKYNPVKTIKTNVIG 127
               PR      DV         L  VD   H A     P +    +YNP++ IKTN++G
Sbjct: 66  EFNDPRMRFFIGDVRDLERLNYALEGVDICIHAAALKHVPIA----EYNPLECIKTNIMG 121

Query: 128 TLNMLGLAKRVG-ARILLTST 147
             N++    +   ++++  ST
Sbjct: 122 ASNVINACLKNAISQVIALST 142

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236

 Score = 52.7 bits (127), Expect = 7e-09
 Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 13/121 (10%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
             MR+LV G  G +  +L+ +L   + +E +        +++   +       +++  ++
Sbjct: 20  QGMRVLVVGANGKVARYLLSELKN-KGHEPVA----MVRNEEQGPELRERGASDIVVANL 74

Query: 91  TEPL---LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
            E        +D +   A  + P        KTI  ++ G +  +  A++ G  R ++ S
Sbjct: 75  EEDFSHAFASIDAVVFAAG-SGP---HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVS 130

Query: 147 T 147
           +
Sbjct: 131 S 131

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 21/144 (14%)

Query: 25  FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-------DNYFTGSKDNLRKW 77
            + F+Q   R+ VTG  GF G  L   L +     V           + F  +   +   
Sbjct: 3   NNSFWQ-GKRVFVTGHTGFKGGWLSLWL-QTMGATVKGYSLTAPTVPSLFETA--RVADG 58

Query: 78  IGHPRFELIRHDVTEPLLIEV--DQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNML 132
           +     ++   +     + E   + ++H+A  A P+    Y   PV+T  TNV+GT+ +L
Sbjct: 59  MQSEIGDIRDQNKLLESIREFQPEIVFHMA--AQPLVRLSYS-EPVETYSTNVMGTVYLL 115

Query: 133 GLAKRVG--ARILLTSTSEVYGDP 154
              + VG    ++  ++ + Y + 
Sbjct: 116 EAIRHVGGVKAVVNITSDKCYDNK 139

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221

 Score = 50.4 bits (120), Expect = 4e-08
 Identities = 14/128 (10%), Positives = 40/128 (31%), Gaps = 14/128 (10%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M+I + G  G  GS ++++      +EV         +   +     H    +++ D+ +
Sbjct: 1   MKIGIIGATGRAGSRILEEAKN-RGHEVTA----IVRNAGKIT--QTHKDINILQKDIFD 53

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVY 151
             L ++     +                 + +V    +++ +       R+L+   +   
Sbjct: 54  LTLSDLSDQNVVVDAYGI------SPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASL 107

Query: 152 GDPLVHPQ 159
                   
Sbjct: 108 QIDEDGNT 115

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253

 Score = 46.8 bits (111), Expect = 8e-07
 Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 24/136 (17%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           +   +LVTG +G  G  +  KL E     V         S     K       ++   D+
Sbjct: 3   NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG---LVRSAQGKEKI--GGEADVFIGDI 57

Query: 91  TEPLLIE-----VDQIYHLA-------------CPASPIFYKYNPVKTIKTNVIGTLNML 132
           T+   I      +D +  L                  P F   +     + + IG  N +
Sbjct: 58  TDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQI 117

Query: 133 GLAKRVG-ARILLTST 147
             AK  G   I++  +
Sbjct: 118 DAAKVAGVKHIVVVGS 133

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 13/131 (9%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVI-VVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           M+I V G  G  GS +V +      +EV+ VV +     K   R              +T
Sbjct: 1   MKIAVLGATGRAGSAIVAEARR-RGHEVLAVVRD---PQKAADRLGATVATLVKEPLVLT 56

Query: 92  EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEV 150
           E  L  VD +             Y        ++    +++ L +      + +  ++ +
Sbjct: 57  EADLDSVDAVVDALSVPWGSGRGY-------LHLDFATHLVSLLRNSDTLAVFILGSASL 109

Query: 151 YGDPLVHPQDE 161
                 HP   
Sbjct: 110 AMPGADHPMIL 120

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 12/83 (14%)

Query: 24  RFSKFFQSN-MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPR 82
           R S  F  + + + +TG  G +G  L  +L     +EVI +       +    K    P 
Sbjct: 138 RTSTLFDGSPLTVAITGSRGLVGRALTAQLQT-GGHEVIQL----VRKEPKPGKRFWDPL 192

Query: 83  FELIRHDVTEPLLIEVDQIYHLA 105
                      LL   D + HLA
Sbjct: 193 NPASD------LLDGADVLVHLA 209

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 6/61 (9%)

Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
            I V G AG IG  +   L  +    V V D+        L   +        + D  +
Sbjct: 6  WNICVVG-AGKIGQMIAALLKTSSNYSVTVADH----DLAALAV-LNRMGVATKQVDAKD 59

Query: 93 P 93
           
Sbjct: 60 E 60

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 23/122 (18%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
           M+I + G  G +G  L+  L   +                 + +   +   + +  DV  
Sbjct: 1   MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGA--------RKVEQVPQYNNVKAVHFDVDW 52

Query: 92  -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT 145
                   L  +D I +++               +K ++ G + ++  A++    R +L 
Sbjct: 53  TPEEMAKQLHGMDAIINVSGSG--------GKSLLKVDLYGAVKLMQAAEKAEVKRFILL 104

Query: 146 ST 147
           ST
Sbjct: 105 ST 106

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 27/150 (18%)

Query: 12  SASKPPPTPSPLRFSKFFQSNM-RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS 70
           S+       S  R + +FQ +M  +L+ G  G I  H++++L + +  +  +    F   
Sbjct: 3   SSHHHHHHSSG-RENLYFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTL----FARQ 57

Query: 71  KDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNV 125
              + K       ++I  DV         +   D +Y                 T +   
Sbjct: 58  PAKIHK-PYPTNSQIIMGDVLNHAALKQAMQGQDIVYANL--------------TGEDLD 102

Query: 126 IGTLNMLGLAKRVG-ARILLTSTSEVYGDP 154
           I   +++   K     R++   +  +Y + 
Sbjct: 103 IQANSVIAAMKACDVKRLIFVLSLGIYDEV 132

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 19/132 (14%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
            +I + G  G  G   + + ++    EV V           L    G     ++  DV +
Sbjct: 4   KKIAIFGATGQTGLTTLAQAVQ-AGYEVTV----LVRDSSRLPS-EGPRPAHVVVGDVLQ 57

Query: 93  P-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
                  +   D +  L           N +        G  N++   K  G  +++  +
Sbjct: 58  AADVDKTVAGQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDKVVACT 110

Query: 147 TSEVYGDPLVHP 158
           ++ +  DP   P
Sbjct: 111 SAFLLWDPTKVP 122

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} Length = 467

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           +L+  G+GF+   ++D L  N+   V V       +  N +        + I  DVT+ 
Sbjct: 25 NVLL-LGSGFVAQPVIDTLAANDDINVTVACR----TLANAQALAKPSGSKAISLDVTDD 79

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 11/131 (8%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
            +IL+ G  G +G  L  +L   + +EV  +      S   +   +     ++ R D   
Sbjct: 4   SKILIAG-CGDLGLELARRLTA-QGHEVTGL----RRSAQPMPAGVQTLIADVTRPDTLA 57

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY 151
            ++    +I      AS    +Y+      + V G  N L   +      +   S++ VY
Sbjct: 58  SIVHLRPEILVYCVAAS----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVY 113

Query: 152 GDPLVHPQDES 162
           G  +    DE 
Sbjct: 114 GQEVEEWLDED 124

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 2/64 (3%)

Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           I + G AG I   L   L+      + +             + I H R  +I      P
Sbjct: 7  YITILGAAGQIAQXLTATLLTYTDMHITLYGR--QLKTRIPPEIIDHERVTVIEGSFQNP 64

Query: 94 LLIE 97
            +E
Sbjct: 65 GXLE 68

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 37/168 (22%)

Query: 27  KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----LRKWIGHPR 82
             F  + +IL+T         + D L       + +  +  T + D     L K++    
Sbjct: 260 NAFNLSCKILLTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 83  FELIRHDV--TEPLLI----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
            +L   +V  T P  +    E  +       A+   +K+     + T +  +LN+L  A 
Sbjct: 316 QDL-PREVLTTNPRRLSIIAESIRDG----LATWDNWKHVNCDKLTTIIESSLNVLEPA- 369

Query: 137 RVGARILLTSTSEVYGDPLVHPQD--------ESYWGNVNPIGMFSFV 176
                       +++    V P             W +V    +   V
Sbjct: 370 ---------EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 7/44 (15%), Positives = 16/44 (36%)

Query: 20 PSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV 63
                  F   N  + + G +G  G  L+ +++E      + +
Sbjct: 6  ALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTL 49

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335

 Score = 41.4 bits (98), Expect = 7e-05
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 17/96 (17%)

Query: 80  HPRFELIRHDVTEP-----LLIEV--DQIYHLAC----PASPIFYKYNPVKTIKTNVIGT 128
               +    D+ +       +I+    ++Y+LA      AS  +    PV T   + +G 
Sbjct: 62  EGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGAS--WN--QPVTTGVVDGLGV 117

Query: 129 LNMLGLAKRVG--ARILLTSTSEVYGDPLVHPQDES 162
            ++L   ++     R    STSE++G      QDE+
Sbjct: 118 THLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN 153

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 38/130 (29%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MR L+TG +G +G  L   L  +E++EVI V                   ++L   D+T+
Sbjct: 1   MRTLITGASGQLGIELSRLL--SERHEVIKVY----------NSSEIQGGYKL---DLTD 45

Query: 93  PLLIE-------VDQIYHLACPASPIFYKY--------NPVKTIKTNVIGTLNMLGLAKR 137
              +E        D I + A  A                  K  K N     +++   K 
Sbjct: 46  FPRLEDFIIKKRPDVIINAA--A------MTDVDKCEIEKEKAYKINAEAVRHIVRAGKV 97

Query: 138 VGARILLTST 147
           + + I+  ST
Sbjct: 98  IDSYIVHIST 107

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 8/31 (25%), Positives = 18/31 (58%)

Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVV 63
          M I++TG  G +G+H+ ++ + N  +   + 
Sbjct: 1  MNIMLTGATGHLGTHITNQAIANHIDHFHIG 31

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRH 88
           +  R+L+ G  G  G HL+D+++      +VI             +    HPR +    
Sbjct: 3  STPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPAR---------KALAEHPRLDNPVG 53

Query: 89 DVTE 92
           + E
Sbjct: 54 PLAE 57

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 23/131 (17%), Positives = 41/131 (31%), Gaps = 37/131 (28%)

Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           N R+LVTG  G +G  +  +  +N  + V           + +              ++ 
Sbjct: 2   NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQV--------------NLL 47

Query: 92  EPLLIE-------VDQIYHLACPASPIFYKY--------NPVKTIKTNVIGTLNMLGLAK 136
           +   +           I H  C A                P    + NV  + N+   A 
Sbjct: 48  DSNAVHHIIHDFQPHVIVH--CAA------ERRPDVVENQPDAASQLNVDASGNLAKEAA 99

Query: 137 RVGARILLTST 147
            VGA ++  S+
Sbjct: 100 AVGAFLIYISS 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	99.94
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	99.93
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	99.92
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	99.91
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	99.91
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	99.91
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	99.91
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	99.91
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	99.91
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	99.9
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	99.9
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	99.9
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	99.9
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	99.9
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	99.9
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	99.9
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	99.9
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	99.9
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	99.9
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	99.9
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	99.89
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	99.89
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	99.89
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	99.89
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	99.89
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	99.89
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	99.88
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	99.88
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	99.88
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	99.88
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	99.88
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	99.88
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	99.88
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	99.88
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	99.88
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	99.88
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	99.88
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	99.87
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	99.87
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	99.87
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	99.87
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	99.87
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	99.87
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	99.86
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	99.86
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	99.86
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.86
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	99.86
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	99.85
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	99.85
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	99.85
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	99.85
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	99.85
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.84
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	99.84
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.84
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	99.84
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	99.84
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	99.84
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	99.83
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	99.83
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	99.83
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	99.81
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	99.81
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.81
4f6c_A	427	AUSA reductase domain protein; thioester reductase	99.81
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	99.81
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	99.8
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.8
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	99.8
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	99.79
4f6l_B	508	AUSA reductase domain protein; thioester reductase	99.79
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	99.79
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	99.78
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	99.77
1xq6_A	253	Unknown protein; structural genomics, protein stru	99.76
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	99.76
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	99.75
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	99.75
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	99.75
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	99.75
3rih_A	293	Short chain dehydrogenase or reductase; structural	99.74
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	99.74
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	99.74
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	99.74
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	99.74
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	99.74
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	99.74
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	99.73
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	99.73
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	99.73
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	99.73
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	99.73
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	99.73
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	99.73
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	99.73
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	99.73
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	99.73
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	99.72
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	99.72
1xq1_A	266	Putative tropinone reducatse; structural genomics,	99.72
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	99.72
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	99.72
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	99.72
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	99.72
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	99.72
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	99.72
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	99.72
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	99.72
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	99.72
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	99.72
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	99.72
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.72
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	99.72
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	99.72
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	99.72
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	99.72
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	99.71
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	99.71
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.71
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	99.71
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	99.71
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	99.71
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.71
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	99.71
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	99.71
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	99.71
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	99.71
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.71
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	99.71
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	99.71
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	99.71
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	99.71
4dqx_A	277	Probable oxidoreductase protein; structural genomi	99.71
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	99.71
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	99.71
1spx_A	278	Short-chain reductase family member (5L265); paral	99.71
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	99.71
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	99.7
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	99.7
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	99.7
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	99.7
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	99.7
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	99.7
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	99.7
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	99.7
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	99.7
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	99.7
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	99.7
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	99.7
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	99.7
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	99.7
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	99.7
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	99.7
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	99.7
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	99.7
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	99.7
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	99.7
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	99.7
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	99.7
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	99.7
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	99.7
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	99.7
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	99.7
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	99.7
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	99.7
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	99.7
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	99.7
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	99.7
3imf_A	257	Short chain dehydrogenase; structural genomics, in	99.69
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	99.69
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	99.69
3cxt_A	291	Dehydrogenase with different specificities; rossma	99.69
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	99.69
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	99.69
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	99.69
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	99.69
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.69
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	99.69
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	99.69
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	99.69
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	99.69
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	99.69
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	99.69
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	99.69
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	99.69
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	99.69
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	99.69
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	99.69
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	99.69
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	99.69
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	99.69
1xkq_A	280	Short-chain reductase family member (5D234); parra	99.69
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.69
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	99.69
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	99.68
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	99.68
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	99.68
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	99.68
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	99.68
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	99.68
1xhl_A	297	Short-chain dehydrogenase/reductase family member	99.68
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	99.68
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	99.68
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	99.68
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	99.68
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	99.68
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	99.68
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	99.68
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	99.68
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	99.68
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	99.68
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	99.68
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	99.68
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	99.68
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	99.68
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.68
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	99.68
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	99.68
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	99.68
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	99.67
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	99.67
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	99.67
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	99.67
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	99.67
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	99.67
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	99.67
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	99.67
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	99.67
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	99.67
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.67
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	99.67
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.67
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	99.67
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	99.67
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	99.67
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	99.67
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.67
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	99.67
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	99.67
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	99.66
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	99.66
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	99.66
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	99.66
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	99.66
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	99.66
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	99.66
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	99.66
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	99.66
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	99.65
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	99.65
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	99.65
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	99.65
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	99.65
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	99.65
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	99.65
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	99.65
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	99.65
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	99.65
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	99.65
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	99.64
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	99.64
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	99.64
4e4y_A	244	Short chain dehydrogenase family protein; structur	99.64
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.64
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	99.64
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	99.64
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	99.64
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	99.63
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	99.63
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	99.63
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	99.63
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	99.62
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	99.62
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	99.62
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	99.62
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	99.61
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	99.61
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	99.61
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	99.61
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	99.6
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	99.6
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	99.59
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	99.59
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	99.57
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	99.57
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	99.57
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	99.56
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	99.55
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	99.54
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	99.54
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	99.53
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	99.52
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	99.51
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	99.46
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	99.46
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	99.45
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	99.44
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	99.41
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	99.4
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	99.38
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	99.36
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	99.32
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.31
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	99.31
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	99.28
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	99.28
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.25
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.24
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	99.22
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	99.21
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	99.09
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	99.07
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.04
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.99
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	98.89
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	98.89
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	98.85
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	98.84
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	98.7
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	98.6
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.45
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.43
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	98.42
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.38
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	98.31
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	98.31
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.27
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.22
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.2
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.18
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	98.15
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	98.12
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.11
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.09
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	98.02
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	98.01
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.0
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.93
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.89
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.88
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	97.87
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.86
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.85
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.83
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.82
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.81
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.81
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.79
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.77
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	97.75
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.74
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	97.73
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.71
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	97.71
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.7
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.68
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.68
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	97.66
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.64
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.61
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.61
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	97.59
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	97.58
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	97.57
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.56
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	97.56
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.55
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.54
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.54
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.53
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	97.52
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.52
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.49
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.48
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	97.48
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.46
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.43
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	97.41
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.4
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.35
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.33
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	97.31
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.28
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.27
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.26
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.25
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	97.24
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.24
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	97.23
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	97.23
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	97.2
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.2
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.19
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.19
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	97.18
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.18
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.17
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.16
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.15
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	97.13
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	97.12
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	97.12
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	97.1
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.1
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.1
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.09
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.09
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.08
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	97.04
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.04
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	97.01
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.99
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.95
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.94
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.92
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.9
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.89
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.88
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.88
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	96.88
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.88
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	96.84
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.82
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.81
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.8
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.79
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.79
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.78
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.77
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	96.75
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	96.75
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	96.74
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.73
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.72
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.72
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.69
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	96.65
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.61
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	96.61
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	96.58
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.57
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.54
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	96.53
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	96.49
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.47
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	96.47
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.46
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	96.44
3cmm_A	1015	Ubiquitin-activating enzyme E1 1; UBA1, protein tu	96.42
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	96.42
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.39
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	96.37
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	96.37
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	96.36
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	96.34
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.34
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.33
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.31
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.3
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.29
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	96.28
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	96.28
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	96.24
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	96.23
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.22
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	96.21
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.19
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	96.19
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.18
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	96.18
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.13
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.12
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	96.1
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.03
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.02
3gxh_A	157	Putative phosphatase (DUF442); YP_001181608.1, str	96.0
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.97
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	95.95
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.93
4ezb_A	317	Uncharacterized conserved protein; structural geno	95.92
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.91
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.91
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.91
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.89
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	95.89
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	95.88
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	95.86
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	95.85
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.79
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	95.71
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	95.7
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	95.7
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.69
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.68
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	95.65
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	95.64
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.62
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.6
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.59

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=99.94  E-value=1.7e-25  Score=179.05  Aligned_cols=155  Identities=69%  Similarity=1.099  Sum_probs=126.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      +++|+|+||||+||||+++++.|+++ |++|++++|........+..+....+++++.+|+.+..+.++|+|||+||...
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vih~A~~~~  103 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMD-GHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPAS  103 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCCS
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHC-CCEEEEEeCCCccchhhhhhhccCCceEEEeCccCChhhcCCCEEEECccccC
Confidence            47799999999999999999999999 89999999876544443444433457899999999998889999999999765


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhhhh
Q 029640          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      ...+..++...+++|+.++.+++++|++.++++||+||.++|+.....+++|+.|....+..+...|   +.+|+.+|+
T Consensus       104 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y---~~sK~~~E~  179 (343)
T 2b69_A          104 PPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACY---DEGKRVAET  179 (343)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHH---HHHHHHHHH
T ss_pred             chhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcHHHhCCCCCCCCcccccccCCCCCCCCch---HHHHHHHHH
Confidence            4334456778899999999999999998888999999999999876678888876555566666667   888999886

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=99.93  E-value=6.9e-25  Score=175.85  Aligned_cols=150  Identities=33%  Similarity=0.422  Sum_probs=126.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC------CceEEEeccccccc-----cCCc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH------PRFELIRHDVTEPL-----LIEV   98 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~-----~~~~   98 (190)
                      +++|+|+||||+||||+++++.|+++ |++|+++.|........+..+...      .++.++.+|+.|..     +.++
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKL-NQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            46799999999999999999999999 899999999877665554444322      58999999999864     3479


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchh
Q 029640           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVL  177 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~  177 (190)
                      |+|||+||......+..++...+++|+.++.+++++|++.++ ++||+||.++|+.....+++|+     .+..+.+.| 
T Consensus       102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y-  175 (351)
T 3ruf_A          102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEE-----NIGNPLSPY-  175 (351)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCSHH-
T ss_pred             CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccC-----CCCCCCChh-
Confidence            999999997665555667788999999999999999999987 9999999999998877788888     455666778 


Q ss_pred             hhhHHHHhhhh
Q 029640          178 KDGIMKLIGEL  188 (190)
Q Consensus       178 ~~~~sK~~~E~  188 (190)
                        +.+|+.+|+
T Consensus       176 --~~sK~~~E~  184 (351)
T 3ruf_A          176 --AVTKYVNEI  184 (351)
T ss_dssp             --HHHHHHHHH
T ss_pred             --HHHHHHHHH
Confidence              888999985

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=99.92  E-value=4e-24  Score=171.09  Aligned_cols=150  Identities=30%  Similarity=0.451  Sum_probs=114.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCC--CeEEEEcCCC-CCChhhhhhhhcCCceEEEecccccccc-----C--CcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVD   99 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~--~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~--~~d   99 (190)
                      +.+|+|+||||+||||+++++.|+++ |  +.|++++|.. ......+..+....++.++.+|+.|...     .  ++|
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~-g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d  100 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQS-YETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQ  100 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHH-CTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCC
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhh-CCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCC
Confidence            46789999999999999999999999 6  6777777764 2333334444444689999999998643     2  499


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCC-CCCCCCCCCccCCCCCCcccchh
Q 029640          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LVHPQDESYWGNVNPIGMFSFVL  177 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~-~~~~~~e~~~~~~~~~~~~~~y~  177 (190)
                      +|||+||......+..++...+++|+.++.+++++|++.++ ++||+||.++|+.. ...+++|+     .+..+...| 
T Consensus       101 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~-----~~~~p~~~Y-  174 (346)
T 4egb_A          101 VIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEE-----TPLAPNSPY-  174 (346)
T ss_dssp             EEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTT-----SCCCCCSHH-
T ss_pred             EEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCC-----CCCCCCChh-
Confidence            99999997765555667888999999999999999999987 79999999999976 45578888     456666778 


Q ss_pred             hhhHHHHhhhh
Q 029640          178 KDGIMKLIGEL  188 (190)
Q Consensus       178 ~~~~sK~~~E~  188 (190)
                        +.+|+.+|+
T Consensus       175 --~~sK~~~E~  183 (346)
T 4egb_A          175 --SSSKASADM  183 (346)
T ss_dssp             --HHHHHHHHH
T ss_pred             --HHHHHHHHH
Confidence              888999985

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.91  E-value=6.3e-24  Score=169.50  Aligned_cols=149  Identities=26%  Similarity=0.400  Sum_probs=122.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc-------CCcCEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL-------IEVDQI  101 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~-------~~~d~v  101 (190)
                      ++|+|+||||+||||+++++.|+++ |++|++++|+..........+.  ...++.++.+|+.|...       .++|+|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   82 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAH-GYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAA   82 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHC-CCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEE
Confidence            5689999999999999999999999 8999999998766554443331  13478899999998642       279999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhh
Q 029640          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDG  180 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~  180 (190)
                      ||+||..........+.+.+++|+.++.++++++++.+. ++|++||.++|+.....+++|+     .+..+.+.|   +
T Consensus        83 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~-----~~~~~~~~Y---~  154 (341)
T 3enk_A           83 IHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDET-----FPLSATNPY---G  154 (341)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTT-----SCCBCSSHH---H
T ss_pred             EECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCC-----CCCCCCChh---H
Confidence            999997665445566778899999999999999999886 9999999999998877788888     455566677   8


Q ss_pred             HHHHhhhh
Q 029640          181 IMKLIGEL  188 (190)
Q Consensus       181 ~sK~~~E~  188 (190)
                      .+|+.+|+
T Consensus       155 ~sK~~~e~  162 (341)
T 3enk_A          155 QTKLMAEQ  162 (341)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88999885

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=99.91  E-value=2.6e-23  Score=164.02  Aligned_cols=142  Identities=40%  Similarity=0.615  Sum_probs=118.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccC---CcCEEEEccCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI---EVDQIYHLACPAS  109 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~---~~d~vi~~ag~~~  109 (190)
                      |+|+||||+||||+++++.|+++ |++|++++|.........     ...+.++.+|+.|....   .-|+|||+||...
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~d~vih~A~~~~   74 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVEL-GYEVVVVDNLSSGRREFV-----NPSAELHVRDLKDYSWGAGIKGDVVFHFAANPE   74 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEECCCSSCCGGGS-----CTTSEEECCCTTSTTTTTTCCCSEEEECCSSCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhC-CCEEEEEeCCCCCchhhc-----CCCceEEECccccHHHHhhcCCCEEEECCCCCC
Confidence            68999999999999999999999 899999999766544322     34788999999986521   1299999999766


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhhhh
Q 029640          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      ...+..++...+++|+.++.+++++|++.++ ++||+||.++|+.....+++|+     .+..+.+.|   +.+|+.+|+
T Consensus        75 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-----~~~~p~~~Y---~~sK~~~e~  146 (312)
T 3ko8_A           75 VRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEE-----EPYKPISVY---GAAKAAGEV  146 (312)
T ss_dssp             SSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHH---HHHHHHHHH
T ss_pred             chhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCC-----CCCCCCChH---HHHHHHHHH
Confidence            5566777888999999999999999999887 8999999999998877788888     456666778   888999886

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=99.91  E-value=2e-23  Score=168.25  Aligned_cols=146  Identities=29%  Similarity=0.437  Sum_probs=117.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHh--cCCCeEEEEcCCCCCCh---------hhhhhhhcCCceEEEeccccccc----
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLME--NEKNEVIVVDNYFTGSK---------DNLRKWIGHPRFELIRHDVTEPL----   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~--~~~~~v~~~~r~~~~~~---------~~~~~~~~~~~~~~~~~D~~~~~----   94 (190)
                      +++|+|+||||+||||+++++.|++  . |++|++++|......         ..... ....++.++.+|+.|..    
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~   85 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHP-KAKVVVLDKFRSNTLFSNNRPSSLGHFKN-LIGFKGEVIAADINNPLDLRR   85 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCT-TSEEEEEECCCCC-------CCCCCCGGG-GTTCCSEEEECCTTCHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCC-CCeEEEEECCCccccccccchhhhhhhhh-ccccCceEEECCCCCHHHHHH
Confidence            4679999999999999999999999  6 899999998654110         01111 12346789999999863    


Q ss_pred             --cCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCc
Q 029640           95 --LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGM  172 (190)
Q Consensus        95 --~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~  172 (190)
                        ..++|+|||+||....  +..++...+++|+.++.+++++|++.++++||+||.++|+.... +++|+     .+..+
T Consensus        86 ~~~~~~D~vih~A~~~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS~~vyg~~~~-~~~E~-----~~~~p  157 (362)
T 3sxp_A           86 LEKLHFDYLFHQAAVSDT--TMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAGVYGNTKA-PNVVG-----KNESP  157 (362)
T ss_dssp             HTTSCCSEEEECCCCCGG--GCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGGCSCCS-SBCTT-----SCCCC
T ss_pred             hhccCCCEEEECCccCCc--cccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCcHHHhCCCCC-CCCCC-----CCCCC
Confidence              4579999999996543  45678889999999999999999999889999999999998766 88888     45666


Q ss_pred             ccchhhhhHHHHhhhh
Q 029640          173 FSFVLKDGIMKLIGEL  188 (190)
Q Consensus       173 ~~~y~~~~~sK~~~E~  188 (190)
                      .+.|   +.+|+.+|+
T Consensus       158 ~~~Y---~~sK~~~E~  170 (362)
T 3sxp_A          158 ENVY---GFSKLCMDE  170 (362)
T ss_dssp             SSHH---HHHHHHHHH
T ss_pred             CChh---HHHHHHHHH
Confidence            6778   888999986

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=99.91  E-value=7.9e-24  Score=171.02  Aligned_cols=152  Identities=25%  Similarity=0.329  Sum_probs=121.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccc-ccc-----cCCcCEEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-EPL-----LIEVDQIYH  103 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~-----~~~~d~vi~  103 (190)
                      +++|+|+||||+||||+++++.|+++++++|++++|+.......    ....++.++.+|+. +..     +.++|+|||
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~----~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih   97 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDL----VKHERMHFFEGDITINKEWVEYHVKKCDVILP   97 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGG----GGSTTEEEEECCTTTCHHHHHHHHHHCSEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhh----ccCCCeEEEeCccCCCHHHHHHHhccCCEEEE
Confidence            46789999999999999999999998668999999976544332    23458999999999 653     246999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccC-CCCC-CcccchhhhhH
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-VNPI-GMFSFVLKDGI  181 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~-~~~~-~~~~~y~~~~~  181 (190)
                      +|+...+..+..++...+++|+.++.+++++|++.+.|+||+||.++|+.....+++|+.++. ..+. .+.+.|   +.
T Consensus        98 ~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~~Y---~~  174 (372)
T 3slg_A           98 LVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIY---AC  174 (372)
T ss_dssp             CBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTHHH---HH
T ss_pred             cCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCcHHHhCCCCCCCCCccccccccCCCCCCCCcH---HH
Confidence            999776555556778899999999999999999888899999999999987777888875321 1122 344567   88


Q ss_pred             HHHhhhh
Q 029640          182 MKLIGEL  188 (190)
Q Consensus       182 sK~~~E~  188 (190)
                      +|+.+|+
T Consensus       175 sK~~~E~  181 (372)
T 3slg_A          175 SKQLMDR  181 (372)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8999986

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=99.91  E-value=2.2e-23  Score=166.26  Aligned_cols=149  Identities=28%  Similarity=0.278  Sum_probs=118.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhhhhhcCCceEEEecccccccc-----C--CcCEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIY  102 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~-----~--~~d~vi  102 (190)
                      ++|+|+||||+||||+++++.|+++ |++|++++|+..... ..+..+....++.++.+|+.|...     .  ++|+||
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEK-GYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            5789999999999999999999999 899999999765432 223322223478999999998642     1  479999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--CeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhh
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDG  180 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~  180 (190)
                      |+||......+..++...+++|+.++.+++++|.+.+  .++|++||.++||.....+++|+     .+..+...|   +
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-----~~~~~~~~Y---~  152 (345)
T 2z1m_A           81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEK-----TPFYPRSPY---A  152 (345)
T ss_dssp             ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHH---H
T ss_pred             ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCcc-----CCCCCCChh---H
Confidence            9999765443456778899999999999999999877  48999999999998776677887     455555677   8


Q ss_pred             HHHHhhhh
Q 029640          181 IMKLIGEL  188 (190)
Q Consensus       181 ~sK~~~E~  188 (190)
                      .+|+.+|.
T Consensus       153 ~sK~~~e~  160 (345)
T 2z1m_A          153 VAKLFGHW  160 (345)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88999885

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=99.91  E-value=3.6e-24  Score=169.28  Aligned_cols=143  Identities=34%  Similarity=0.485  Sum_probs=114.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC---CChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT---GSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      ++|+|+||||+||||+++++.|+++ |++|+++.|+..   .....+..+....++.++.+|+.     ++|+|||+|+.
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-----~~d~vi~~a~~   79 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVAS-GEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS-----DVRLVYHLASH   79 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT-TCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT-----TEEEEEECCCC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHC-CCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc-----cCCEEEECCcc
Confidence            5789999999999999999999999 899999999766   22222322223345666666765     89999999997


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhh
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIG  186 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~  186 (190)
                      .....+...+...++ |+.++.+++++|++.++ ++||+||.++|+.....+++|+     .+..+.+.|   +.+|+.+
T Consensus        80 ~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~-----~~~~p~~~Y---~~sK~~~  150 (321)
T 3vps_A           80 KSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPED-----SPLSPRSPY---AASKVGL  150 (321)
T ss_dssp             CCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHH---HHHHHHH
T ss_pred             CChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCC-----CCCCCCChh---HHHHHHH
Confidence            765445566777788 99999999999999996 9999999999998877788888     456666778   8889998


Q ss_pred             hh
Q 029640          187 EL  188 (190)
Q Consensus       187 E~  188 (190)
                      |+
T Consensus       151 E~  152 (321)
T 3vps_A          151 EM  152 (321)
T ss_dssp             HH
T ss_pred             HH
Confidence            85

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=99.90  E-value=3e-23  Score=165.29  Aligned_cols=150  Identities=32%  Similarity=0.451  Sum_probs=116.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCC-CChhhhhhhhcCCceEEEecccccccc-----CCcCEEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPLL-----IEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~d~vi~  103 (190)
                      ++|+|+||||+||||+++++.|++++ +++|++++|... .....+..+....++.++.+|+.|...     .++|+|||
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   81 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVH   81 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEE
Confidence            46789999999999999999999994 389999988642 222233333224578999999998643     47999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhH
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGI  181 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~  181 (190)
                      +||......+..++...+++|+.++.+++++|.+.+.  ++||+||.++|+.....+++|+     .+..+...|   +.
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y---~~  153 (336)
T 2hun_A           82 LAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTEN-----DRLMPSSPY---SA  153 (336)
T ss_dssp             CCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTT-----BCCCCCSHH---HH
T ss_pred             CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCC-----CCCCCCCcc---HH
Confidence            9997653334456778899999999999999998763  9999999999997656678887     345555677   88


Q ss_pred             HHHhhhh
Q 029640          182 MKLIGEL  188 (190)
Q Consensus       182 sK~~~E~  188 (190)
                      +|+.+|+
T Consensus       154 sK~~~e~  160 (336)
T 2hun_A          154 TKAASDM  160 (336)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8999885

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=99.90  E-value=2.6e-23  Score=166.91  Aligned_cols=150  Identities=30%  Similarity=0.371  Sum_probs=119.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc------CCceEEEeccccccc-----cCCc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG------HPRFELIRHDVTEPL-----LIEV   98 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~-----~~~~   98 (190)
                      +++|+|+||||+||||+++++.|+++ |++|++++|+.......+..+..      ..++.++.+|+.|..     +.++
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKL-DQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            57899999999999999999999999 89999999976544333322210      247899999999864     3479


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchh
Q 029640           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVL  177 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~  177 (190)
                      |+|||+||......+..++...+++|+.++.+++++|.+.++ ++||+||.++|+.....+++|+.     +..+...| 
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~~-----~~~~~~~Y-  177 (352)
T 1sb8_A          104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDT-----IGKPLSPY-  177 (352)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTC-----CCCCCSHH-
T ss_pred             CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCCC-----CCCCCChh-
Confidence            999999997553334456778899999999999999999886 89999999999987666788883     44555677 


Q ss_pred             hhhHHHHhhhh
Q 029640          178 KDGIMKLIGEL  188 (190)
Q Consensus       178 ~~~~sK~~~E~  188 (190)
                        +.+|+.+|.
T Consensus       178 --~~sK~~~e~  186 (352)
T 1sb8_A          178 --AVTKYVNEL  186 (352)
T ss_dssp             --HHHHHHHHH
T ss_pred             --HHHHHHHHH
Confidence              888999885

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=99.90  E-value=3.1e-23  Score=165.88  Aligned_cols=148  Identities=29%  Similarity=0.422  Sum_probs=116.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC------Chhhhhhhh--cCCceEEEecccccccc-----C--
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG------SKDNLRKWI--GHPRFELIRHDVTEPLL-----I--   96 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~------~~~~~~~~~--~~~~~~~~~~D~~~~~~-----~--   96 (190)
                      +|+|+||||+||||+++++.|+++ |++|++++|....      ....+..+.  ...++.++.+|+.|...     .  
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~   80 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEA-GYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY   80 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHT-TCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence            589999999999999999999999 8999999886543      222222221  13468899999998642     2  


Q ss_pred             CcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCc-cc
Q 029640           97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGM-FS  174 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~-~~  174 (190)
                      ++|+|||+||......+...+...+++|+.++.+++++|++.++ ++||+||.++|+.....+++|+.     +..+ ..
T Consensus        81 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~~-----~~~p~~~  155 (348)
T 1ek6_A           81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH-----PTGGCTN  155 (348)
T ss_dssp             CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTS-----CCCCCSS
T ss_pred             CCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCCC-----CCCCCCC
Confidence            69999999997654334456778899999999999999999886 89999999999977667888884     4334 45


Q ss_pred             chhhhhHHHHhhhh
Q 029640          175 FVLKDGIMKLIGEL  188 (190)
Q Consensus       175 ~y~~~~~sK~~~E~  188 (190)
                      .|   +.+|+.+|+
T Consensus       156 ~Y---~~sK~~~e~  166 (348)
T 1ek6_A          156 PY---GKSKFFIEE  166 (348)
T ss_dssp             HH---HHHHHHHHH
T ss_pred             ch---HHHHHHHHH
Confidence            67   888999885

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=99.90  E-value=5.8e-23  Score=162.28  Aligned_cols=135  Identities=27%  Similarity=0.351  Sum_probs=112.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC  106 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag  106 (190)
                      +|+|+||||+||||+++++.|+++ |++|+++.|+... .. +.      ++.++.+|+. ..     +.++|+|||+|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~-~~-~~------~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~   71 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKND-GNTPIILTRSIGN-KA-IN------DYEYRVSDYT-LEDLINQLNDVDAVVHLAA   71 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCCC-------------CCEEEECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhC-CCEEEEEeCCCCc-cc-CC------ceEEEEcccc-HHHHHHhhcCCCEEEEccc
Confidence            589999999999999999999999 8999999997222 22 21      6889999998 53     357999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHh
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      .....    ++...+++|+.++.+++++|++.++ |+||+||.++|+.....+++|+     .+..+.+.|   +.+|+.
T Consensus        72 ~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y---~~sK~~  139 (311)
T 3m2p_A           72 TRGSQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEK-----ELPLPDLMY---GVSKLA  139 (311)
T ss_dssp             CCCSS----SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTT-----SCCCCSSHH---HHHHHH
T ss_pred             cCCCC----ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC-----CCCCCCchh---HHHHHH
Confidence            76543    6677899999999999999999987 7999999999998777788888     456666778   888999


Q ss_pred             hhh
Q 029640          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      +|+
T Consensus       140 ~E~  142 (311)
T 3m2p_A          140 CEH  142 (311)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            986

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=99.90  E-value=8e-23  Score=163.54  Aligned_cols=148  Identities=32%  Similarity=0.388  Sum_probs=115.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCC-ChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~  104 (190)
                      ||+|+||||+||||+++++.|++++ +++|++++|.... ....+..+. ..++.++.+|+.|..     +.++|+|||+
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   82 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAIL-GDRVELVVGDIADAELVDKLAAKADAIVHY   82 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGC-SSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhc-cCCeEEEECCCCCHHHHHHHhhcCCEEEEC
Confidence            5799999999999999999999984 5899999886532 222222222 357899999999864     3468999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCC------------CCCCCCCccCCCCCCc
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLV------------HPQDESYWGNVNPIGM  172 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~------------~~~~e~~~~~~~~~~~  172 (190)
                      ||......+..+++..+++|+.++.+++++|.+.++++||+||..+|+....            .+++|+     .+..+
T Consensus        83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~-----~~~~~  157 (348)
T 1oc2_A           83 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAE-----TNYNP  157 (348)
T ss_dssp             CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTT-----SCCCC
T ss_pred             CcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEecccceeCCCcccccccccccccCCCcCCC-----CCCCC
Confidence            9976543344567889999999999999999988889999999999986432            456666     45555


Q ss_pred             ccchhhhhHHHHhhhh
Q 029640          173 FSFVLKDGIMKLIGEL  188 (190)
Q Consensus       173 ~~~y~~~~~sK~~~E~  188 (190)
                      ...|   +.+|+.+|+
T Consensus       158 ~~~Y---~~sK~~~e~  170 (348)
T 1oc2_A          158 SSPY---SSTKAASDL  170 (348)
T ss_dssp             CSHH---HHHHHHHHH
T ss_pred             CCcc---HHHHHHHHH
Confidence            5677   888999885

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=99.90  E-value=4.1e-23  Score=164.12  Aligned_cols=143  Identities=28%  Similarity=0.406  Sum_probs=115.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----C--CcCEEEEc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHL  104 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~--~~d~vi~~  104 (190)
                      ||+|+||||+||||+++++.|+++ |++|++++|........+     ..++.++.+|+.|...     .  ++|+|||+
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~   74 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDE-GLSVVVVDNLQTGHEDAI-----TEGAKFYNGDLRDKAFLRDVFTQENIEAVMHF   74 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCGGGS-----CTTSEEEECCTTCHHHHHHHHHHSCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhC-CCEEEEEeCCCcCchhhc-----CCCcEEEECCCCCHHHHHHHHhhcCCCEEEEC
Confidence            478999999999999999999999 899999988655433221     1268889999998642     3  79999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHH
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMK  183 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK  183 (190)
                      ||......+..++...+++|+.++.+++++|++.++ ++||+||.++|+.....+++|+     ++..+...|   +.+|
T Consensus        75 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~-----~~~~~~~~Y---~~sK  146 (330)
T 2c20_A           75 AADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEE-----TMTNPTNTY---GETK  146 (330)
T ss_dssp             CCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTT-----SCCCCSSHH---HHHH
T ss_pred             CcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcC-----CCCCCCChH---HHHH
Confidence            997654334456778899999999999999999886 8999999999997766788888     344555677   8889


Q ss_pred             Hhhhh
Q 029640          184 LIGEL  188 (190)
Q Consensus       184 ~~~E~  188 (190)
                      +.+|+
T Consensus       147 ~~~e~  151 (330)
T 2c20_A          147 LAIEK  151 (330)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99886

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.90  E-value=5.3e-23  Score=163.77  Aligned_cols=149  Identities=25%  Similarity=0.232  Sum_probs=116.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhhhhhcCCceEEEecccccccc-----C--CcCEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIY  102 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~-----~--~~d~vi  102 (190)
                      ++|+|+||||+||||+++++.|+++ |++|+++.|+..... ..+..+....++.++.+|+.|...     .  ++|+||
T Consensus        13 ~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vi   91 (335)
T 1rpn_A           13 MTRSALVTGITGQDGAYLAKLLLEK-GYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVY   91 (335)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             cCCeEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEEE
Confidence            6799999999999999999999999 899999998765422 222222123478899999998642     2  479999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--CeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhh
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDG  180 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~  180 (190)
                      |+||......+..++...+++|+.++.+++++|++.+  .++|++||.++|+.....+++|+     .+..+.+.|   +
T Consensus        92 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y---~  163 (335)
T 1rpn_A           92 NLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN-----TPFYPRSPY---G  163 (335)
T ss_dssp             ECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHH---H
T ss_pred             ECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcc-----cCCCCCChh---H
Confidence            9999765443456778899999999999999999887  38999999999998766678888     455555677   8


Q ss_pred             HHHHhhhh
Q 029640          181 IMKLIGEL  188 (190)
Q Consensus       181 ~sK~~~E~  188 (190)
                      .+|+.+|+
T Consensus       164 ~sK~~~e~  171 (335)
T 1rpn_A          164 VAKLYGHW  171 (335)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88999885

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=99.90  E-value=5.1e-23  Score=164.72  Aligned_cols=136  Identities=29%  Similarity=0.356  Sum_probs=111.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~a  105 (190)
                      ++|+|+||||+||||+++++.|+++ |++|++++|+...           .++.++.+|+.|..     +.++|+|||+|
T Consensus        18 ~~~~vlVtGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~-----------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A   85 (347)
T 4id9_A           18 GSHMILVTGSAGRVGRAVVAALRTQ-GRTVRGFDLRPSG-----------TGGEEVVGSLEDGQALSDAIMGVSAVLHLG   85 (347)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHT-TCCEEEEESSCCS-----------SCCSEEESCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhC-CCEEEEEeCCCCC-----------CCccEEecCcCCHHHHHHHHhCCCEEEECC
Confidence            6789999999999999999999999 8999999987543           36788899999864     35799999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCC--CCCCCCCCCCccCCCCCCcccchhhhhHH
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD--PLVHPQDESYWGNVNPIGMFSFVLKDGIM  182 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~--~~~~~~~e~~~~~~~~~~~~~~y~~~~~s  182 (190)
                      +......  ......+++|+.++.+++++|++.++ +|||+||.++|+.  ....+++|+     .+..+...|   +.+
T Consensus        86 ~~~~~~~--~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~-----~~~~~~~~Y---~~s  155 (347)
T 4id9_A           86 AFMSWAP--ADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTED-----HPLCPNSPY---GLT  155 (347)
T ss_dssp             CCCCSSG--GGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTT-----SCCCCCSHH---HHH
T ss_pred             cccCcch--hhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCC-----CCCCCCChH---HHH
Confidence            8765432  23478899999999999999999887 9999999999997  455678888     455666777   888


Q ss_pred             HHhhhh
Q 029640          183 KLIGEL  188 (190)
Q Consensus       183 K~~~E~  188 (190)
                      |+.+|+
T Consensus       156 K~~~E~  161 (347)
T 4id9_A          156 KLLGEE  161 (347)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999985

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=99.90  E-value=9.9e-23  Score=160.98  Aligned_cols=142  Identities=36%  Similarity=0.552  Sum_probs=111.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc----cCCcCEEEEccCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----LIEVDQIYHLACP  107 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~----~~~~d~vi~~ag~  107 (190)
                      ||+|+||||+||||+++++.|+++ |+.|.+ .++........     ...+.++.+|+.+..    +.++|+|||+|+.
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~-g~~v~~-~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~d~vih~a~~   73 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSES-NEIVVI-DNLSSGNEEFV-----NEAARLVKADLAADDIKDYLKGAEEVWHIAAN   73 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTT-SCEEEE-CCCSSCCGGGS-----CTTEEEECCCTTTSCCHHHHTTCSEEEECCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhC-CCEEEE-EcCCCCChhhc-----CCCcEEEECcCChHHHHHHhcCCCEEEECCCC
Confidence            478999999999999999999999 655544 44333332221     347889999999832    2479999999997


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhh
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIG  186 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~  186 (190)
                      .....+..++...+++|+.++.++++++++.++ ++||+||..+|+.....+++|+     .+..+...|   +.+|+.+
T Consensus        74 ~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y---~~sK~~~  145 (313)
T 3ehe_A           74 PDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPED-----YPTHPISLY---GASKLAC  145 (313)
T ss_dssp             CCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTT-----SCCCCCSHH---HHHHHHH
T ss_pred             CChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCC-----CCCCCCCHH---HHHHHHH
Confidence            655556677889999999999999999999887 9999999999998777788887     455666677   8889998


Q ss_pred             hh
Q 029640          187 EL  188 (190)
Q Consensus       187 E~  188 (190)
                      |.
T Consensus       146 e~  147 (313)
T 3ehe_A          146 EA  147 (313)
T ss_dssp             HH
T ss_pred             HH
Confidence            85

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=99.90  E-value=6.1e-23  Score=164.96  Aligned_cols=150  Identities=20%  Similarity=0.196  Sum_probs=116.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----C--CcCEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIY  102 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~--~~d~vi  102 (190)
                      +.+|+|+||||+||||+++++.|+++ |++|+++.|+..........+....++.++.+|+.+...     .  ++|+||
T Consensus         7 ~~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   85 (357)
T 1rkx_A            7 WQGKRVFVTGHTGFKGGWLSLWLQTM-GATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVF   85 (357)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             hCCCEEEEECCCchHHHHHHHHHHhC-CCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999999 899999999765544332222223478999999998642     2  389999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecceecCCCCC-CCCCCCCccCCCCCCcccchhhh
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLV-HPQDESYWGNVNPIGMFSFVLKD  179 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~~~~~~~~-~~~~e~~~~~~~~~~~~~~y~~~  179 (190)
                      |+||......+...+...+++|+.++.+++++|.+.+ + ++||+||.++|+.... .+++|+     .+..+...|   
T Consensus        86 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~-----~~~~~~~~Y---  157 (357)
T 1rkx_A           86 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN-----EAMGGYDPY---  157 (357)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTT-----SCBCCSSHH---
T ss_pred             ECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCC-----CCCCCCCcc---
Confidence            9998644333455677889999999999999999876 5 9999999999997543 356666     344555677   


Q ss_pred             hHHHHhhhh
Q 029640          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      +.+|+.+|+
T Consensus       158 ~~sK~~~e~  166 (357)
T 1rkx_A          158 SNSKGCAEL  166 (357)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888999885

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=99.90  E-value=2e-22  Score=160.71  Aligned_cols=148  Identities=35%  Similarity=0.442  Sum_probs=116.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhc-C-C---CeEEEEcCCCCC-ChhhhhhhhcCCceEEEeccccccc-----cCCcCEE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMEN-E-K---NEVIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQI  101 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~-~-~---~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~v  101 (190)
                      |+|+||||+||||+++++.|+++ + +   ++|++++|.... ....+..+....++.++.+|+.|..     +.++|+|
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   80 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCEE
Confidence            57999999999999999999995 3 5   899999886432 2233333322457899999999864     3579999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhh
Q 029640          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDG  180 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~  180 (190)
                      ||+||......+..++...+++|+.++.+++++|.+.++ ++||+||.++|+.....+++|+     .+..+...|   +
T Consensus        81 ih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y---~  152 (337)
T 1r6d_A           81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPY---A  152 (337)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT-----SCCCCCSHH---H
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCC-----CCCCCCCch---H
Confidence            999997654334456778999999999999999999887 9999999999997655677887     455555677   8


Q ss_pred             HHHHhhhh
Q 029640          181 IMKLIGEL  188 (190)
Q Consensus       181 ~sK~~~E~  188 (190)
                      .+|+.+|+
T Consensus       153 ~sK~~~e~  160 (337)
T 1r6d_A          153 ASKAGSDL  160 (337)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88999886

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=99.89  E-value=9.6e-23  Score=158.10  Aligned_cols=137  Identities=23%  Similarity=0.296  Sum_probs=113.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~a  105 (190)
                      ++|+|+||||+|+||+++++.|+++ |++|++++|+.....        ..++.++.+|+.|..     +.++|+|||||
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~-G~~V~~~~r~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~A   72 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPM-AEILRLADLSPLDPA--------GPNEECVQCDLADANAVNAMVAGCDGIVHLG   72 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGG-EEEEEEEESSCCCCC--------CTTEEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhc-CCEEEEEecCCcccc--------CCCCEEEEcCCCCHHHHHHHHcCCCEEEECC
Confidence            5688999999999999999999999 899999999765433        347899999999864     35799999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCC-CCCCCCCCCccCCCCCCcccchhhhhHHH
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LVHPQDESYWGNVNPIGMFSFVLKDGIMK  183 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~-~~~~~~e~~~~~~~~~~~~~~y~~~~~sK  183 (190)
                      |..    ....++..+++|+.++.++++++++.+. +||++||..+|+.. ...+++|+     .+..+...|   +.||
T Consensus        73 g~~----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~-----~~~~~~~~Y---~~sK  140 (267)
T 3rft_A           73 GIS----VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPD-----VPARPDGLY---GVSK  140 (267)
T ss_dssp             SCC----SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTT-----SCCCCCSHH---HHHH
T ss_pred             CCc----CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCC-----CCCCCCChH---HHHH
Confidence            974    2446778899999999999999999886 99999999999743 34567776     456666677   8889


Q ss_pred             Hhhhh
Q 029640          184 LIGEL  188 (190)
Q Consensus       184 ~~~E~  188 (190)
                      +..|.
T Consensus       141 ~~~e~  145 (267)
T 3rft_A          141 CFGEN  145 (267)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=99.89  E-value=1.2e-22  Score=164.70  Aligned_cols=150  Identities=26%  Similarity=0.366  Sum_probs=109.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~  103 (190)
                      +.+|+|+||||+||||+++++.|+++ | ++|++++|+.......+.   ...++.++.+|+.|..     +.++|+|||
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~~~l~---~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih  105 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLLEL-GVNQVHVVDNLLSAEKINVP---DHPAVRFSETSITDDALLASLQDEYDYVFH  105 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHT-TCSEEEEECCCTTCCGGGSC---CCTTEEEECSCTTCHHHHHHCCSCCSEEEE
T ss_pred             hCCCEEEEECCccHHHHHHHHHHHHc-CCceEEEEECCCCCchhhcc---CCCceEEEECCCCCHHHHHHHhhCCCEEEE
Confidence            47799999999999999999999999 8 999999987654432221   2357899999999863     357999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecceecCCCCCCCCC--CCCccCCCCC-Ccccchhh
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDPLVHPQD--ESYWGNVNPI-GMFSFVLK  178 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~~~~~~~~~~~~~--e~~~~~~~~~-~~~~~y~~  178 (190)
                      +||......+..++...+++|+.++.+++++|++. ++ ++||+||.++|+.....+++  |+.|.  .+. .+...|  
T Consensus       106 ~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~--~~~~~~~~~Y--  181 (377)
T 2q1s_A          106 LATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDI--VSLHNNDSPY--  181 (377)
T ss_dssp             CCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCC--CCSSCCCSHH--
T ss_pred             CCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCccccccc--ccccCCCCch--
Confidence            99976543344567789999999999999999998 76 99999999999976665777  77431  133 445667  


Q ss_pred             hhHHHHhhhh
Q 029640          179 DGIMKLIGEL  188 (190)
Q Consensus       179 ~~~sK~~~E~  188 (190)
                       +.+|+.+|+
T Consensus       182 -~~sK~~~E~  190 (377)
T 2q1s_A          182 -SMSKIFGEF  190 (377)
T ss_dssp             -HHHHHHHHH
T ss_pred             -HHHHHHHHH
Confidence             888999885

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=99.89  E-value=1.4e-22  Score=160.45  Aligned_cols=141  Identities=33%  Similarity=0.363  Sum_probs=113.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----C--CcCEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIY  102 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~--~~d~vi  102 (190)
                      .++++|+||||+||||+++++.|+++ |++|++++|+... ..    +    ++.++.+|+.|...     .  ++|+||
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~-~~----l----~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   79 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQ-NVEVFGTSRNNEA-KL----P----NVEMISLDIMDSQRVKKVISDIKPDYIF   79 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCTTC-CC----T----TEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHC-CCEEEEEecCCcc-cc----c----eeeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999999 8999999987654 11    1    67889999998642     2  389999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecceecCCC--CCCCCCCCCccCCCCCCcccchhh
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDP--LVHPQDESYWGNVNPIGMFSFVLK  178 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~~~~~~~--~~~~~~e~~~~~~~~~~~~~~y~~  178 (190)
                      |+||......+..++...+++|+.++.+++++|++. +. ++|++||.++|+..  ...+++|+     .+..+...|  
T Consensus        80 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~-----~~~~~~~~Y--  152 (321)
T 2pk3_A           80 HLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEE-----NQLRPMSPY--  152 (321)
T ss_dssp             ECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTT-----SCCBCCSHH--
T ss_pred             EcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCC-----CCCCCCCcc--
Confidence            999976544445577889999999999999999876 34 99999999999975  55678888     455555677  


Q ss_pred             hhHHHHhhhh
Q 029640          179 DGIMKLIGEL  188 (190)
Q Consensus       179 ~~~sK~~~E~  188 (190)
                       +.+|+.+|+
T Consensus       153 -~~sK~~~E~  161 (321)
T 2pk3_A          153 -GVSKASVGM  161 (321)
T ss_dssp             -HHHHHHHHH
T ss_pred             -HHHHHHHHH
Confidence             888999886

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=99.89  E-value=2.1e-22  Score=160.78  Aligned_cols=144  Identities=24%  Similarity=0.328  Sum_probs=114.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCC-------CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----c-C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-------NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----L-I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~-------~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~-~   96 (190)
                      +++|+|+||||+||||+++++.|+++ |       ++|++++|+......     ....++.++.+|+.|..     + .
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~-g~~~~r~~~~V~~~~r~~~~~~~-----~~~~~~~~~~~Dl~d~~~~~~~~~~   85 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKD-GSLGGKPVEKFTLIDVFQPEAPA-----GFSGAVDARAADLSAPGEAEKLVEA   85 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHH-CEETTEEEEEEEEEESSCCCCCT-----TCCSEEEEEECCTTSTTHHHHHHHT
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhc-CCcccCCCceEEEEEccCCcccc-----ccCCceeEEEcCCCCHHHHHHHHhc
Confidence            47789999999999999999999999 7       799999987543321     11346888999999864     2 3


Q ss_pred             CcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-----C-eEEEEecceecCCCCCCCCCCCCccCCCCC
Q 029640           97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-----A-RILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~  170 (190)
                      ++|+|||+||.... .+.+++...+++|+.++.+++++|++.+     + ++|++||..+|+.....+++|+     .+.
T Consensus        86 ~~d~vih~A~~~~~-~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~-----~~~  159 (342)
T 2hrz_A           86 RPDVIFHLAAIVSG-EAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDE-----FHT  159 (342)
T ss_dssp             CCSEEEECCCCCHH-HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTT-----CCC
T ss_pred             CCCEEEECCccCcc-cccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCC-----CCC
Confidence            79999999986542 2345677889999999999999998765     4 9999999999997655678888     455


Q ss_pred             CcccchhhhhHHHHhhhh
Q 029640          171 GMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       171 ~~~~~y~~~~~sK~~~E~  188 (190)
                      .+...|   +.+|+.+|+
T Consensus       160 ~~~~~Y---~~sK~~~e~  174 (342)
T 2hrz_A          160 TPLTSY---GTQKAICEL  174 (342)
T ss_dssp             CCSSHH---HHHHHHHHH
T ss_pred             CCcchH---HHHHHHHHH
Confidence            555677   888999885

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=99.89  E-value=3.2e-22  Score=159.41  Aligned_cols=142  Identities=32%  Similarity=0.498  Sum_probs=110.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cC--CcCEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIY  102 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~--~~d~vi  102 (190)
                      +.+|+|+||||+|+||+++++.|+++ |++|++++|+..........+   .++.++.+|+.|..     +.  ++|+||
T Consensus        18 ~~~~~vlVTGasG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~l---~~v~~~~~Dl~d~~~~~~~~~~~~~D~vi   93 (330)
T 2pzm_A           18 GSHMRILITGGAGCLGSNLIEHWLPQ-GHEILVIDNFATGKREVLPPV---AGLSVIEGSVTDAGLLERAFDSFKPTHVV   93 (330)
T ss_dssp             TTCCEEEEETTTSHHHHHHHHHHGGG-TCEEEEEECCSSSCGGGSCSC---TTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCccchhhhhcc---CCceEEEeeCCCHHHHHHHHhhcCCCEEE
Confidence            47799999999999999999999999 899999999655433211111   47889999999864     23  799999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCC--CCCCCCccCCCCCCcccchhhh
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVH--PQDESYWGNVNPIGMFSFVLKD  179 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~--~~~e~~~~~~~~~~~~~~y~~~  179 (190)
                      |+||..... +..++.  +++|+.++.+++++|.+.++ ++|++||.++|+.....  +++|+.       .+...|   
T Consensus        94 h~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~-------~~~~~Y---  160 (330)
T 2pzm_A           94 HSAAAYKDP-DDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPT-------APFTSY---  160 (330)
T ss_dssp             ECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCC-------CCCSHH---
T ss_pred             ECCccCCCc-cccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCC-------CCCChH---
Confidence            999976542 222333  89999999999999998887 99999999999875443  677762       334567   


Q ss_pred             hHHHHhhhh
Q 029640          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      +.+|+.+|+
T Consensus       161 ~~sK~~~e~  169 (330)
T 2pzm_A          161 GISKTAGEA  169 (330)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888999985

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=99.89  E-value=3.5e-22  Score=159.30  Aligned_cols=147  Identities=31%  Similarity=0.474  Sum_probs=112.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc-------CCcCEEEE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL-------IEVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~-------~~~d~vi~  103 (190)
                      |+|+||||+||||+++++.|+++ |++|++++|...........+.  ...++.++.+|+.|...       .++|+|||
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih   79 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH   79 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEE
Confidence            57999999999999999999999 8999998775433322222211  12467889999998642       25999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCc-ccchhhhhH
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGM-FSFVLKDGI  181 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~-~~~y~~~~~  181 (190)
                      +||..........+...+++|+.++.++++++++.++ ++|++||.++|+.....+++|+.     +..+ ...|   +.
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~-----~~~~~~~~Y---~~  151 (338)
T 1udb_A           80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESF-----PTGTPQSPY---GK  151 (338)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTS-----CCCCCSSHH---HH
T ss_pred             CCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCccc-----CCCCCCChH---HH
Confidence            9986543333445677899999999999999998886 99999999999976666777773     3322 4567   88


Q ss_pred             HHHhhhh
Q 029640          182 MKLIGEL  188 (190)
Q Consensus       182 sK~~~E~  188 (190)
                      ||+.+|+
T Consensus       152 sK~~~e~  158 (338)
T 1udb_A          152 SKLMVEQ  158 (338)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8999885

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=99.88  E-value=2.3e-22  Score=160.61  Aligned_cols=153  Identities=28%  Similarity=0.389  Sum_probs=111.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhhcCCceEEEecccccccc-----CC--cCEEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDVTEPLL-----IE--VDQIYH  103 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~-----~~--~d~vi~  103 (190)
                      ||+|+||||+||||+++++.|+++ |++|++++|..... ......+....++.++.+|+.|...     .+  +|+|||
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFH   79 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhC-CCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEE
Confidence            478999999999999999999998 89999998854222 2222233333468899999998642     24  999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEecceecCCCCCCCCCCCC--c---------cCCCCC
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESY--W---------GNVNPI  170 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS~~~~~~~~~~~~~e~~--~---------~~~~~~  170 (190)
                      +||......+..++...+++|+.++.+++++|.+.++  ++||+||.++|+.....++.|+.  |         ....+.
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~~  159 (347)
T 1orr_A           80 LAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQL  159 (347)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCC
T ss_pred             CCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccCCC
Confidence            9997554333456778899999999999999998874  79999999999975443333221  0         011344


Q ss_pred             CcccchhhhhHHHHhhhh
Q 029640          171 GMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       171 ~~~~~y~~~~~sK~~~E~  188 (190)
                      .+...|   +.+|+.+|+
T Consensus       160 ~~~~~Y---~~sK~~~E~  174 (347)
T 1orr_A          160 DFHSPY---GCSKGAADQ  174 (347)
T ss_dssp             CCCHHH---HHHHHHHHH
T ss_pred             CCCCch---HHHHHHHHH
Confidence            455566   888999886

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=99.88  E-value=3.1e-22  Score=162.86  Aligned_cols=148  Identities=29%  Similarity=0.428  Sum_probs=114.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHH-hcCCCeEEEEcCCCCCC--------hhhhh----hhhc---CCc---eEEEeccccc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLM-ENEKNEVIVVDNYFTGS--------KDNLR----KWIG---HPR---FELIRHDVTE   92 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~-~~~~~~v~~~~r~~~~~--------~~~~~----~~~~---~~~---~~~~~~D~~~   92 (190)
                      +|+|+||||+||||+++++.|+ ++ |++|++++|.....        ...+.    .+..   ..+   +.++.+|+.|
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   80 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDT-NHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHC-CCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhC-CCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence            4799999999999999999999 88 89999998865442        22221    1111   124   8899999998


Q ss_pred             ccc-----C--C-cCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCC-------C
Q 029640           93 PLL-----I--E-VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL-------V  156 (190)
Q Consensus        93 ~~~-----~--~-~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~-------~  156 (190)
                      ...     .  + +|+|||+||......+..++...+++|+.++.+++++|++.++ +|||+||.++|+...       .
T Consensus        81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~  160 (397)
T 1gy8_A           81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA  160 (397)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCcccccccc
Confidence            642     2  4 9999999997654334456778999999999999999999887 899999999998765       4


Q ss_pred             CCCCCCCccCCCCCCcccchhhhhHHHHhhhh
Q 029640          157 HPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       157 ~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      .+++|+     .+..+...|   +.+|+.+|+
T Consensus       161 ~~~~E~-----~~~~p~~~Y---~~sK~~~e~  184 (397)
T 1gy8_A          161 EPIDIN-----AKKSPESPY---GESKLIAER  184 (397)
T ss_dssp             CCBCTT-----SCCBCSSHH---HHHHHHHHH
T ss_pred             cCcCcc-----CCCCCCCch---HHHHHHHHH
Confidence            677777     344555677   888999986

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=99.88  E-value=8.5e-23  Score=159.43  Aligned_cols=127  Identities=23%  Similarity=0.237  Sum_probs=107.7

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----C--CcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~--~~d~vi~~a  105 (190)
                      |+|+||||+||||+++++.|+++ |++|+++.|.                    ++|+.|...     .  ++|+|||+|
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~--------------------~~D~~d~~~~~~~~~~~~~d~vi~~a   64 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPE-EYDIYPFDKK--------------------LLDITNISQVQQVVQEIRPHIIIHCA   64 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTT-TEEEEEECTT--------------------TSCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhC-CCEEEEeccc--------------------ccCCCCHHHHHHHHHhcCCCEEEECC
Confidence            48999999999999999999999 8999999882                    145655421     2  699999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHh
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      |......++.++...+++|+.++.+++++|++.++|+||+||.++|+.....+++|+     ++..+.+.|   +.+|+.
T Consensus        65 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~vy~~~~~~~~~E~-----~~~~p~~~Y---~~sK~~  136 (287)
T 3sc6_A           65 AYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEF-----HNPAPINIY---GASKYA  136 (287)
T ss_dssp             CCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCCCCSSCBCTT-----SCCCCCSHH---HHHHHH
T ss_pred             cccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchhhhcCCCCCCCCCCC-----CCCCCCCHH---HHHHHH
Confidence            987655556778899999999999999999999889999999999998777788998     455666778   888999


Q ss_pred             hhh
Q 029640          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      +|+
T Consensus       137 ~E~  139 (287)
T 3sc6_A          137 GEQ  139 (287)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            986

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=99.88  E-value=5.2e-22  Score=159.51  Aligned_cols=148  Identities=29%  Similarity=0.411  Sum_probs=113.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC-CChhhhhhhhcCCceEEEecccccccc-----C--CcCEEEEc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHL  104 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~--~~d~vi~~  104 (190)
                      |+|+||||+||||+++++.|++.++++|++++|... .....+..+....++.++.+|+.|...     .  ++|+|||+
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   80 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL   80 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEC
Confidence            579999999999999999999975689999988642 222233333234578999999998642     2  79999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc--CC--------eEEEEecceecCCCCC--C--------CCCCCCc
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV--GA--------RILLTSTSEVYGDPLV--H--------PQDESYW  164 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~--------~~i~vSS~~~~~~~~~--~--------~~~e~~~  164 (190)
                      ||......+..+++..+++|+.++.+++++|.+.  ++        +|||+||.++|+....  .        +++|+  
T Consensus        81 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~--  158 (361)
T 1kew_A           81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTET--  158 (361)
T ss_dssp             CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTT--
T ss_pred             CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCC--
Confidence            9976543344567889999999999999999887  52        8999999999986431  1        56666  


Q ss_pred             cCCCCCCcccchhhhhHHHHhhhh
Q 029640          165 GNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       165 ~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                         .+..+.+.|   +.+|+.+|.
T Consensus       159 ---~~~~~~~~Y---~~sK~~~e~  176 (361)
T 1kew_A          159 ---TAYAPSSPY---SASKASSDH  176 (361)
T ss_dssp             ---SCCCCCSHH---HHHHHHHHH
T ss_pred             ---CCCCCCCcc---HHHHHHHHH
Confidence               345555677   888999885

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.88  E-value=4.7e-22  Score=160.83  Aligned_cols=147  Identities=26%  Similarity=0.245  Sum_probs=113.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhh------cCCceEEEecccccccc-----C--Cc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWI------GHPRFELIRHDVTEPLL-----I--EV   98 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~------~~~~~~~~~~D~~~~~~-----~--~~   98 (190)
                      |+|+||||+||||+++++.|+++ |++|++++|+.... ...+..+.      ...++.++.+|+.|...     .  ++
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~  103 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEK-GYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP  103 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             cEEEEECCCchHHHHHHHHHHHC-CCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCC
Confidence            68999999999999999999999 89999999875432 11122221      13468899999998642     1  47


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC----CeEEEEecceecCCCCCCCCCCCCccCCCCCCccc
Q 029640           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG----ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS  174 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~  174 (190)
                      |+|||+||......+..++...+++|+.++.+++++|.+.+    .+||++||.++|+.....+++|+     .+..+..
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~-----~~~~~~~  178 (375)
T 1t2a_A          104 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPRS  178 (375)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTT-----SCCCCCS
T ss_pred             CEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCcc-----CCCCCCC
Confidence            99999999765433345677889999999999999999887    38999999999997666678888     3445556


Q ss_pred             chhhhhHHHHhhhh
Q 029640          175 FVLKDGIMKLIGEL  188 (190)
Q Consensus       175 ~y~~~~~sK~~~E~  188 (190)
                      .|   +.+|+.+|.
T Consensus       179 ~Y---~~sK~~~e~  189 (375)
T 1t2a_A          179 PY---GAAKLYAYW  189 (375)
T ss_dssp             HH---HHHHHHHHH
T ss_pred             hh---HHHHHHHHH
Confidence            77   888999885

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=99.88  E-value=6.4e-22  Score=159.59  Aligned_cols=148  Identities=26%  Similarity=0.314  Sum_probs=111.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhhhhhc-----CCceEEEecccccccc-----C--Cc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIG-----HPRFELIRHDVTEPLL-----I--EV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~~-----~~~~~~~~~D~~~~~~-----~--~~   98 (190)
                      ||+|+||||+||||+++++.|+++ |++|++++|+..... ..+..+..     ..++.++.+|+.|...     .  ++
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   79 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEK-GYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP   79 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCC
Confidence            578999999999999999999999 899999998754311 11222111     2468899999998642     1  47


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC----eEEEEecceecCCCCCCCCCCCCccCCCCCCccc
Q 029640           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS  174 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~  174 (190)
                      |+|||+||......+..++...+++|+.++.++++++.+.++    ++|++||.++|+.....+++|+     .+..+..
T Consensus        80 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~-----~~~~~~~  154 (372)
T 1db3_A           80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRS  154 (372)
T ss_dssp             SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTT-----SCCCCCS
T ss_pred             CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCcc-----CCCCCCC
Confidence            999999997655444566778899999999999999998873    8999999999997666678887     4555556


Q ss_pred             chhhhhHHHHhhhh
Q 029640          175 FVLKDGIMKLIGEL  188 (190)
Q Consensus       175 ~y~~~~~sK~~~E~  188 (190)
                      .|   +.+|+.+|+
T Consensus       155 ~Y---~~sK~~~e~  165 (372)
T 1db3_A          155 PY---AVAKLYAYW  165 (372)
T ss_dssp             HH---HHHHHHHHH
T ss_pred             hH---HHHHHHHHH
Confidence            77   888999885

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=99.88  E-value=6.7e-22  Score=157.77  Aligned_cols=149  Identities=28%  Similarity=0.428  Sum_probs=114.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-c-----cCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-L-----LIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~-----~~~~d~vi~~ag  106 (190)
                      |+|+||||+||||+++++.|+++++++|+++.|+.....    .+....++.++.+|+.|. .     +.++|+|||+||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~   76 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS----RFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA   76 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGG----GGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHH----HhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEccc
Confidence            589999999999999999999975689999998654322    222345789999999973 2     236999999999


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccC-CCCC-CcccchhhhhHHHH
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-VNPI-GMFSFVLKDGIMKL  184 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~-~~~~-~~~~~y~~~~~sK~  184 (190)
                      ...+.....++...+++|+.++.+++++|++.+.++||+||.++|+.....+++|+.+.. ..+. .+.+.|   +.+|+
T Consensus        77 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y---~~sK~  153 (345)
T 2bll_A           77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY---SVSKQ  153 (345)
T ss_dssp             CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHH---HHHHH
T ss_pred             ccCccchhcCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecHHHcCCCCCCCcCCcccccccCcccCccccc---HHHHH
Confidence            765433345677889999999999999999887899999999999987666788885421 1121 233456   88899


Q ss_pred             hhhh
Q 029640          185 IGEL  188 (190)
Q Consensus       185 ~~E~  188 (190)
                      .+|+
T Consensus       154 ~~e~  157 (345)
T 2bll_A          154 LLDR  157 (345)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9885

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=99.88  E-value=1.2e-22  Score=158.72  Aligned_cols=134  Identities=22%  Similarity=0.233  Sum_probs=108.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----CC-cCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----IE-VDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~~-~d~vi~~  104 (190)
                      ++|+|+||| +||||+++++.|+++ |++|+++.|+....         ..++.++.+|+.|...     .+ +|+|||+
T Consensus         2 ~~~~ilVtG-aG~iG~~l~~~L~~~-g~~V~~~~r~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~   70 (286)
T 3gpi_A            2 SLSKILIAG-CGDLGLELARRLTAQ-GHEVTGLRRSAQPM---------PAGVQTLIADVTRPDTLASIVHLRPEILVYC   70 (286)
T ss_dssp             CCCCEEEEC-CSHHHHHHHHHHHHT-TCCEEEEECTTSCC---------CTTCCEEECCTTCGGGCTTGGGGCCSEEEEC
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCcccc---------ccCCceEEccCCChHHHHHhhcCCCCEEEEe
Confidence            568999999 699999999999999 89999999976542         2478889999998643     23 9999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHH
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMK  183 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK  183 (190)
                      ||..     ..++...+++|+.++.+++++|++.++ ++||+||.++|+.....+++|+     .+..+.+.|   +.+|
T Consensus        71 a~~~-----~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y---~~sK  137 (286)
T 3gpi_A           71 VAAS-----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDED-----TPPIAKDFS---GKRM  137 (286)
T ss_dssp             HHHH-----HHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTT-----SCCCCCSHH---HHHH
T ss_pred             CCCC-----CCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCC-----CCCCCCChh---hHHH
Confidence            9753     245667789999999999999998886 8999999999998877788888     466666778   8889


Q ss_pred             Hhhhh
Q 029640          184 LIGEL  188 (190)
Q Consensus       184 ~~~E~  188 (190)
                      +.+|+
T Consensus       138 ~~~E~  142 (286)
T 3gpi_A          138 LEAEA  142 (286)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99986

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=99.88  E-value=1.1e-21  Score=156.43  Aligned_cols=141  Identities=12%  Similarity=0.055  Sum_probs=104.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~a  105 (190)
                      .+|+|+||||+||||+++++.|+++ |++|+++.|+...... +.    ..++.++.+|+.|.+     +.++|+|||+|
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~-l~----~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a   85 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAA-GHDLVLIHRPSSQIQR-LA----YLEPECRVAEMLDHAGLERALRGLDGVIFSA   85 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECTTSCGGG-GG----GGCCEEEECCTTCHHHHHHHTTTCSEEEEC-
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEecChHhhhh-hc----cCCeEEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            3469999999999999999999999 8999999997654321 11    236789999999864     35799999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCC--CCCCCCCccCCCCCCc----ccchhh
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV--HPQDESYWGNVNPIGM----FSFVLK  178 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~--~~~~e~~~~~~~~~~~----~~~y~~  178 (190)
                      |....  +..++...+++|+.++.+++++|.+.++ ++||+||.++|+....  .+ +|+     .+..+    ...|  
T Consensus        86 ~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E~-----~~~~p~~~~~~~Y--  155 (342)
T 2x4g_A           86 GYYPS--RPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HEG-----LFYDSLPSGKSSY--  155 (342)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CTT-----CCCSSCCTTSCHH--
T ss_pred             ccCcC--CCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CCC-----CCCCccccccChH--
Confidence            86542  3456778899999999999999999886 9999999999986543  33 666     34444    5667  


Q ss_pred             hhHHHHhhhh
Q 029640          179 DGIMKLIGEL  188 (190)
Q Consensus       179 ~~~sK~~~E~  188 (190)
                       +.+|+.+|+
T Consensus       156 -~~sK~~~e~  164 (342)
T 2x4g_A          156 -VLCKWALDE  164 (342)
T ss_dssp             -HHHHHHHHH
T ss_pred             -HHHHHHHHH
Confidence             888999985

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=99.88  E-value=2.9e-22  Score=158.33  Aligned_cols=134  Identities=23%  Similarity=0.280  Sum_probs=85.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----C--CcCEEEEc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHL  104 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~--~~d~vi~~  104 (190)
                      +|+|+||||+|+||+++++.|+++ |++|+++.|+...           .+  ++.+|+.|...     .  ++|+|||+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~-----------~~--~~~~Dl~d~~~~~~~~~~~~~d~vih~   67 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQN-NWHAVGCGFRRAR-----------PK--FEQVNLLDSNAVHHIIHDFQPHVIVHC   67 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTT-TCEEEEEC-------------------------------CHHHHHHHCCSEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhC-CCeEEEEccCCCC-----------CC--eEEecCCCHHHHHHHHHhhCCCEEEEC
Confidence            589999999999999999999999 8999999885432           12  66788887642     1  48999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHH
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKL  184 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~  184 (190)
                      ||......+..++...+++|+.++.+++++|.+.+.++||+||.++|+. ...+++|+     .+..+.+.|   +.+|+
T Consensus        68 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~~~-~~~~~~E~-----~~~~~~~~Y---~~sK~  138 (315)
T 2ydy_A           68 AAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDG-TNPPYREE-----DIPAPLNLY---GKTKL  138 (315)
T ss_dssp             C-------------------CHHHHHHHHHHHHHTCEEEEEEEGGGSCS-SSCSBCTT-----SCCCCCSHH---HHHHH
T ss_pred             CcccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchHHHcCC-CCCCCCCC-----CCCCCcCHH---HHHHH
Confidence            9976554445667788999999999999999988889999999999997 45578887     344555677   88899


Q ss_pred             hhhh
Q 029640          185 IGEL  188 (190)
Q Consensus       185 ~~E~  188 (190)
                      .+|+
T Consensus       139 ~~e~  142 (315)
T 2ydy_A          139 DGEK  142 (315)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9986

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=99.88  E-value=8.5e-22  Score=157.12  Aligned_cols=141  Identities=26%  Similarity=0.392  Sum_probs=108.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----CC--cCEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----IE--VDQIY  102 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~~--~d~vi  102 (190)
                      +.||+|+||||+||||+++++.|+++ |++|++++|+.......+..   ..++.++.+|+.|...     .+  +|+||
T Consensus        19 ~~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~l~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vi   94 (333)
T 2q1w_A           19 SHMKKVFITGICGQIGSHIAELLLER-GDKVVGIDNFATGRREHLKD---HPNLTFVEGSIADHALVNQLIGDLQPDAVV   94 (333)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCGGGSCC---CTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHC-CCEEEEEECCCccchhhHhh---cCCceEEEEeCCCHHHHHHHHhccCCcEEE
Confidence            36789999999999999999999999 89999999875543322221   1478899999998642     24  99999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecC----CCCCCCCCCCCccCCCCCCcc-cch
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG----DPLVHPQDESYWGNVNPIGMF-SFV  176 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~----~~~~~~~~e~~~~~~~~~~~~-~~y  176 (190)
                      |+||..... +..+++  +++|+.++.+++++|.+.++ +||++||.++|+    .... +++|+.       .+. ..|
T Consensus        95 h~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~-~~~E~~-------~p~~~~Y  163 (333)
T 2q1w_A           95 HTAASYKDP-DDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV-RLDHPR-------NPANSSY  163 (333)
T ss_dssp             ECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSB-CTTSCC-------CCTTCHH
T ss_pred             ECceecCCC-ccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCC-CcCCCC-------CCCCCch
Confidence            999976542 222333  89999999999999999887 999999999998    5444 677763       333 566


Q ss_pred             hhhhHHHHhhhh
Q 029640          177 LKDGIMKLIGEL  188 (190)
Q Consensus       177 ~~~~~sK~~~E~  188 (190)
                         +.+|+.+|+
T Consensus       164 ---~~sK~~~E~  172 (333)
T 2q1w_A          164 ---AISKSANED  172 (333)
T ss_dssp             ---HHHHHHHHH
T ss_pred             ---HHHHHHHHH
Confidence               888999885

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=99.87  E-value=6.7e-22  Score=156.05  Aligned_cols=142  Identities=34%  Similarity=0.485  Sum_probs=111.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----C--CcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~--~~d~vi~~a  105 (190)
                      |+|+||||+||||+++++.|+++ |++|++++|........+     ..++.++.+|+.|...     .  ++|+|||+|
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a   74 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLAR-GLEVAVLDNLATGKRENV-----PKGVPFFRVDLRDKEGVERAFREFRPTHVSHQA   74 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT-TCEEEEECCCSSCCGGGS-----CTTCCEECCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHC-CCEEEEEECCCcCchhhc-----ccCeEEEECCCCCHHHHHHHHHhcCCCEEEECc
Confidence            57999999999999999999999 899999988544332211     1357788899998642     2  699999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecc-eecCC-CCCCCCCCCCccCCCCCCcccchhhhhHH
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS-EVYGD-PLVHPQDESYWGNVNPIGMFSFVLKDGIM  182 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~-~~~~~-~~~~~~~e~~~~~~~~~~~~~~y~~~~~s  182 (190)
                      +......+..++...+++|+.++.+++++|++.++ ++|++||. .+|+. ....+++|+     .+..+...|   +.|
T Consensus        75 ~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~-----~~~~~~~~Y---~~s  146 (311)
T 2p5y_A           75 AQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEET-----WPPRPKSPY---AAS  146 (311)
T ss_dssp             SCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTT-----SCCCCCSHH---HHH
T ss_pred             cccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCC-----CCCCCCChH---HHH
Confidence            87554334456778899999999999999998886 99999999 89986 444567777     344455677   888


Q ss_pred             HHhhhh
Q 029640          183 KLIGEL  188 (190)
Q Consensus       183 K~~~E~  188 (190)
                      |+..|+
T Consensus       147 K~~~e~  152 (311)
T 2p5y_A          147 KAAFEH  152 (311)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999885

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=99.87  E-value=6.6e-22  Score=160.29  Aligned_cols=146  Identities=21%  Similarity=0.192  Sum_probs=112.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhhhhhc-----CC-ceEEEecccccccc-----C--Cc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIG-----HP-RFELIRHDVTEPLL-----I--EV   98 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~~-----~~-~~~~~~~D~~~~~~-----~--~~   98 (190)
                      ++|+||||+||||+++++.|+++ |++|+++.|+..... ..+..+..     .. ++.++.+|+.|...     .  ++
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~  107 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGK-GYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP  107 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHC-CCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCC
Confidence            78999999999999999999999 899999998755311 11111111     12 68899999998642     2  47


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC------CeEEEEecceecCCCCCCCCCCCCccCCCCCCc
Q 029640           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG------ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGM  172 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~------~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~  172 (190)
                      |+|||+||......+..++...+++|+.++.+++++|.+.+      .+|||+||.++|+.... +++|+     .+..+
T Consensus       108 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~-----~~~~~  181 (381)
T 1n7h_A          108 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSET-----TPFHP  181 (381)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTT-----SCCCC
T ss_pred             CEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCC-----CCCCC
Confidence            99999999765433455677889999999999999998764      28999999999997665 78887     45555


Q ss_pred             ccchhhhhHHHHhhhh
Q 029640          173 FSFVLKDGIMKLIGEL  188 (190)
Q Consensus       173 ~~~y~~~~~sK~~~E~  188 (190)
                      ...|   +.+|+.+|.
T Consensus       182 ~~~Y---~~sK~~~E~  194 (381)
T 1n7h_A          182 RSPY---AASKCAAHW  194 (381)
T ss_dssp             CSHH---HHHHHHHHH
T ss_pred             CCch---HHHHHHHHH
Confidence            5677   888999885

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=99.87  E-value=1.3e-21  Score=155.78  Aligned_cols=151  Identities=26%  Similarity=0.243  Sum_probs=111.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEE-ecccccccc-----CCcCE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELI-RHDVTEPLL-----IEVDQ  100 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~-~~D~~~~~~-----~~~d~  100 (190)
                      +++|+|+||||+||||+++++.|+++ |++|+++.|+...... +....   ...++.++ .+|+.|...     .++|+
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~   86 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEH-GYKVRGTARSASKLAN-LQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHH-HHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCcccHHH-HHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCE
Confidence            46799999999999999999999999 8999999986432211 11111   12468888 799998643     36999


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHH-cCC-eEEEEecceecCCCC----CCCCCCCCccCC-------
Q 029640          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR-VGA-RILLTSTSEVYGDPL----VHPQDESYWGNV-------  167 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~~-~~i~vSS~~~~~~~~----~~~~~e~~~~~~-------  167 (190)
                      |||+||.....   .++...+++|+.++.+++++|.+ .++ ++||+||.++|+...    +.+++|+.|...       
T Consensus        87 vih~A~~~~~~---~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~  163 (342)
T 1y1p_A           87 VAHIASVVSFS---NKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKT  163 (342)
T ss_dssp             EEECCCCCSCC---SCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHH
T ss_pred             EEEeCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhcc
Confidence            99999876532   35678899999999999999985 454 999999999986432    156788864211       


Q ss_pred             ----CCCCcccchhhhhHHHHhhhh
Q 029640          168 ----NPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       168 ----~~~~~~~~y~~~~~sK~~~E~  188 (190)
                          .+..+.+.|   +.||+.+|+
T Consensus       164 ~~~~~~~~~~~~Y---~~sK~~~e~  185 (342)
T 1y1p_A          164 LPESDPQKSLWVY---AASKTEAEL  185 (342)
T ss_dssp             SCTTSTTHHHHHH---HHHHHHHHH
T ss_pred             ccccccccchHHH---HHHHHHHHH
Confidence                122333455   888999986

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=99.87  E-value=4.6e-22  Score=155.59  Aligned_cols=129  Identities=29%  Similarity=0.311  Sum_probs=105.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cC--CcCEEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~--~~d~vi~  103 (190)
                      ..++|+||||+||||+++++.|+++ |++|+++.|+                    .+|+.|..     +.  ++|+|||
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~--------------------~~Dl~d~~~~~~~~~~~~~d~vih   69 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGK-NVEVIPTDVQ--------------------DLDITNVLAVNKFFNEKKPNVVIN   69 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTS-SEEEEEECTT--------------------TCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             ccceEEEECCCChHHHHHHHHHHhC-CCeEEeccCc--------------------cCCCCCHHHHHHHHHhcCCCEEEE
Confidence            3489999999999999999999999 8999999884                    24665542     22  6999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHH
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMK  183 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK  183 (190)
                      +||......+..++...+++|+.++.+++++|++.++++||+||.++|+.....+++|+     .+..+.+.|   +.+|
T Consensus        70 ~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv~~SS~~v~~~~~~~~~~E~-----~~~~~~~~Y---~~sK  141 (292)
T 1vl0_A           70 CAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEF-----DEVNPQSAY---GKTK  141 (292)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTT-----SCCCCCSHH---HHHH
T ss_pred             CCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEechHHeECCCCCCCCCCC-----CCCCCccHH---HHHH
Confidence            99976543345677889999999999999999988889999999999998766678888     445555677   8889


Q ss_pred             Hhhhh
Q 029640          184 LIGEL  188 (190)
Q Consensus       184 ~~~E~  188 (190)
                      +.+|+
T Consensus       142 ~~~E~  146 (292)
T 1vl0_A          142 LEGEN  146 (292)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99986

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=99.87  E-value=3.6e-22  Score=156.59  Aligned_cols=130  Identities=23%  Similarity=0.203  Sum_probs=107.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----C--CcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~--~~d~vi~~a  105 (190)
                      |+|+||||+||||+++++.|+ + |++|+++.|+..                .+.+|+.|...     .  ++|+|||+|
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~-g~~V~~~~r~~~----------------~~~~D~~d~~~~~~~~~~~~~d~vih~a   62 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-P-VGNLIALDVHSK----------------EFCGDFSNPKGVAETVRKLRPDVIVNAA   62 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-T-TSEEEEECTTCS----------------SSCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-c-CCeEEEeccccc----------------cccccCCCHHHHHHHHHhcCCCEEEECc
Confidence            589999999999999999999 7 899999998541                24577777532     2  399999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHh
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      |......+..++...+++|+.++.+++++|++.++|+||+||.++|+.....+++|+     .+..+.+.|   +.+|+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~vy~~~~~~~~~E~-----~~~~p~~~Y---~~sK~~  134 (299)
T 1n2s_A           63 AHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQET-----DATSPLNVY---GKTKLA  134 (299)
T ss_dssp             CCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTT-----SCCCCSSHH---HHHHHH
T ss_pred             ccCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecccEEeCCCCCCCCCC-----CCCCCccHH---HHHHHH
Confidence            976544445678889999999999999999988889999999999998776688888     455556677   888999


Q ss_pred             hhh
Q 029640          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      +|+
T Consensus       135 ~E~  137 (299)
T 1n2s_A          135 GEK  137 (299)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            986

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=99.87  E-value=2.1e-21  Score=157.46  Aligned_cols=146  Identities=24%  Similarity=0.223  Sum_probs=113.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~a  105 (190)
                      ++|+|+||||+||||+++++.|+++ |++|+++.|+........     ..++.++.+|+.|..     +.++|+|||+|
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~-----~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A  101 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHE-GHYVIASDWKKNEHMTED-----MFCDEFHLVDLRVMENCLKVTEGVDHVFNLA  101 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCSSSCGG-----GTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHC-CCeEEEEECCCccchhhc-----cCCceEEECCCCCHHHHHHHhCCCCEEEECc
Confidence            5689999999999999999999999 899999999765432211     236789999999864     34799999999


Q ss_pred             CCCCCcc-cccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCC-----CCCCCCCccCCCCCCcccchhh
Q 029640          106 CPASPIF-YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV-----HPQDESYWGNVNPIGMFSFVLK  178 (190)
Q Consensus       106 g~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~-----~~~~e~~~~~~~~~~~~~~y~~  178 (190)
                      |...... ...++...+++|+.++.+++++|++.++ ++||+||.++|+....     .+++|+.+.   +..+...|  
T Consensus       102 ~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~---~~~~~~~Y--  176 (379)
T 2c5a_A          102 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAW---PAEPQDAF--  176 (379)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGS---SBCCSSHH--
T ss_pred             eecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCC---CCCCCChh--
Confidence            9754322 2456788899999999999999999887 9999999999985322     346666421   33444567  


Q ss_pred             hhHHHHhhhh
Q 029640          179 DGIMKLIGEL  188 (190)
Q Consensus       179 ~~~sK~~~E~  188 (190)
                       +.+|+.+|+
T Consensus       177 -~~sK~~~E~  185 (379)
T 2c5a_A          177 -GLEKLATEE  185 (379)
T ss_dssp             -HHHHHHHHH
T ss_pred             -HHHHHHHHH
Confidence             888999885

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=99.86  E-value=1.4e-21  Score=154.08  Aligned_cols=141  Identities=23%  Similarity=0.255  Sum_probs=111.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhc-CCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cC--CcCEEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYH  103 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~-~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~--~~d~vi~  103 (190)
                      +|+|+||||+||||+++++.|+++ ++++|++++|+.....  +.     .++.++.+|+.|..     +.  ++|+|||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~--~~-----~~~~~~~~D~~d~~~~~~~~~~~~~d~vih   74 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD--VV-----NSGPFEVVNALDFNQIEHLVEVHKITDIYL   74 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH--HH-----HSSCEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc--cc-----CCCceEEecCCCHHHHHHHHhhcCCCEEEE
Confidence            478999999999999999999997 5689999988755422  11     14678899999863     22  7999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCC-CCCCCCCccCCCCCCcccchhhhhH
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV-HPQDESYWGNVNPIGMFSFVLKDGI  181 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~-~~~~e~~~~~~~~~~~~~~y~~~~~  181 (190)
                      +||.... ....++...+++|+.++.+++++|++.++ ++||+||.++|+.... .+++|+     .+..+.+.|   +.
T Consensus        75 ~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~-----~~~~~~~~Y---~~  145 (312)
T 2yy7_A           75 MAALLSA-TAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQY-----TIMEPSTVY---GI  145 (312)
T ss_dssp             CCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSS-----CBCCCCSHH---HH
T ss_pred             CCccCCC-chhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCcccc-----CcCCCCchh---HH
Confidence            9986543 23456778899999999999999999887 9999999999987432 456666     455556677   88


Q ss_pred             HHHhhhh
Q 029640          182 MKLIGEL  188 (190)
Q Consensus       182 sK~~~E~  188 (190)
                      +|+.+|+
T Consensus       146 sK~~~e~  152 (312)
T 2yy7_A          146 SKQAGER  152 (312)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8999885

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=99.86  E-value=1.7e-21  Score=150.77  Aligned_cols=136  Identities=27%  Similarity=0.333  Sum_probs=110.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC  106 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag  106 (190)
                      +++|+||||+|+||+++++.|+++ |++|+++.|+.....        ..++.++.+|+.|..     +.++|+|||+||
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~   72 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTL-AHEVRLSDIVDLGAA--------EAHEEIVACDLADAQAVHDLVKDCDGIIHLGG   72 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGT-EEEEEECCSSCCCCC--------CTTEEECCCCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             CceEEEECCCCHHHHHHHHHHHhC-CCEEEEEeCCCcccc--------CCCccEEEccCCCHHHHHHHHcCCCEEEECCc
Confidence            468999999999999999999998 799999999765321        135788999999864     347999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCC-CCCCCCCCCccCCCCCCcccchhhhhHHHH
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LVHPQDESYWGNVNPIGMFSFVLKDGIMKL  184 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~-~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~  184 (190)
                      ...    .......+++|+.++.++++++.+.++ ++|++||..+|+.. ...+++|+     .+..+...|   +.+|+
T Consensus        73 ~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~-----~~~~~~~~Y---~~sK~  140 (267)
T 3ay3_A           73 VSV----ERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTE-----VPRRPDSLY---GLSKC  140 (267)
T ss_dssp             CCS----CCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTT-----SCCCCCSHH---HHHHH
T ss_pred             CCC----CCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCC-----CCCCCCChH---HHHHH
Confidence            652    345677899999999999999998886 99999999999863 34577887     455555677   88899


Q ss_pred             hhhh
Q 029640          185 IGEL  188 (190)
Q Consensus       185 ~~E~  188 (190)
                      ..|.
T Consensus       141 ~~e~  144 (267)
T 3ay3_A          141 FGED  144 (267)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9885

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=99.86  E-value=7.2e-22  Score=155.36  Aligned_cols=138  Identities=22%  Similarity=0.239  Sum_probs=104.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIY  102 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi  102 (190)
                      +++|+|+||||+||||+++++.|+++ |+      +.  ...        ...+..+.+|+.|...       .++|+||
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~-g~------~~--~~~--------~~~~~~~~~D~~d~~~~~~~~~~~~~d~Vi   66 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADG-AG------LP--GED--------WVFVSSKDADLTDTAQTRALFEKVQPTHVI   66 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTT-TC------CT--TCE--------EEECCTTTCCTTSHHHHHHHHHHSCCSEEE
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhc-CC------cc--ccc--------ccccCceecccCCHHHHHHHHhhcCCCEEE
Confidence            57899999999999999999999999 55      10  000        1133445678887642       2499999


Q ss_pred             EccCCCCC-cccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCccc-chhhh
Q 029640          103 HLACPASP-IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS-FVLKD  179 (190)
Q Consensus       103 ~~ag~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~-~y~~~  179 (190)
                      |+|+.... ..+..++...+++|+.++.+++++|++.++ ++||+||.++|+.....+++|+.+... +..+.. .|   
T Consensus        67 h~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~-~~~p~~~~Y---  142 (319)
T 4b8w_A           67 HLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNG-PPHNSNFGY---  142 (319)
T ss_dssp             ECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGGGGBS-CCCSSSHHH---
T ss_pred             ECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCccccccccC-CCCCCcchH---
Confidence            99997542 234567788899999999999999999997 899999999999887778899853221 233333 47   


Q ss_pred             hHHHHhhhh
Q 029640          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      +.+|+.+|+
T Consensus       143 ~~sK~~~E~  151 (319)
T 4b8w_A          143 SYAKRMIDV  151 (319)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888999985

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.86  E-value=2.2e-21  Score=154.62  Aligned_cols=151  Identities=24%  Similarity=0.305  Sum_probs=102.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh--hhhhhhhcCCceEEEecccccccc-----CCcCEEEEc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK--DNLRKWIGHPRFELIRHDVTEPLL-----IEVDQIYHL  104 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~--~~~~~~~~~~~~~~~~~D~~~~~~-----~~~d~vi~~  104 (190)
                      +|+|+||||+||||+++++.|+++ |++|+++.|+.....  ..+..+....++.++.+|+.|...     .++|+|||+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~   87 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQK-GYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHV   87 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHT-TCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHC-CCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEe
Confidence            689999999999999999999999 899998888654322  111122122468889999998643     469999999


Q ss_pred             cCCCCCcccccCc-hhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecce-ecCCC---CCCCCCCCCccCCCCCCcc----
Q 029640          105 ACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSE-VYGDP---LVHPQDESYWGNVNPIGMF----  173 (190)
Q Consensus       105 ag~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~-~~~~~---~~~~~~e~~~~~~~~~~~~----  173 (190)
                      |+....  ...++ .+.+++|+.++.+++++|.+.+ + |+||+||.. +|+.+   ...+++|+.|.+.+...+.    
T Consensus        88 A~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~  165 (338)
T 2rh8_A           88 ATPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPT  165 (338)
T ss_dssp             SSCCCC-----------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------CCC
T ss_pred             CCccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCCcc
Confidence            986532  22233 3478999999999999999885 5 899999987 44321   1136788865433221111    


Q ss_pred             cchhhhhHHHHhhhh
Q 029640          174 SFVLKDGIMKLIGEL  188 (190)
Q Consensus       174 ~~y~~~~~sK~~~E~  188 (190)
                      ..|   +.||+.+|+
T Consensus       166 ~~Y---~~sK~~~E~  177 (338)
T 2rh8_A          166 WGY---PASKTLAEK  177 (338)
T ss_dssp             CCC---TTSCCHHHH
T ss_pred             chH---HHHHHHHHH
Confidence            146   777988875

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=99.86  E-value=2e-21  Score=158.30  Aligned_cols=154  Identities=27%  Similarity=0.359  Sum_probs=110.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh----------------hhhhhh--hcCCceEEEecccc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------DNLRKW--IGHPRFELIRHDVT   91 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~----------------~~~~~~--~~~~~~~~~~~D~~   91 (190)
                      ..+++|+||||+||||+++++.|+++ |++|++++|......                ..+..+  ....++.++.+|+.
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~   87 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKK-NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDIC   87 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTT
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhC-CCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCC
Confidence            36799999999999999999999999 899999987432110                011111  11347889999999


Q ss_pred             cccc-----CC--cCEEEEccCCCCCcccccCch---hHHHHHHHHHHHHHHHHHHcCC--eEEEEecceecCCCCCCCC
Q 029640           92 EPLL-----IE--VDQIYHLACPASPIFYKYNPV---KTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQ  159 (190)
Q Consensus        92 ~~~~-----~~--~d~vi~~ag~~~~~~~~~~~~---~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS~~~~~~~~~~~~  159 (190)
                      |...     .+  +|+|||+||......+..+++   ..+++|+.++.+++++|++.+.  ++|++||.++|+... .++
T Consensus        88 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~-~~~  166 (404)
T 1i24_A           88 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDI  166 (404)
T ss_dssp             SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCB
T ss_pred             CHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC-CCC
Confidence            8642     23  999999999765433333333   4789999999999999998873  899999999999755 467


Q ss_pred             CCCCccCC---------CCCCcccchhhhhHHHHhhhh
Q 029640          160 DESYWGNV---------NPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       160 ~e~~~~~~---------~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      +|+.|...         .+..+.+.|   +.||+.+|+
T Consensus       167 ~E~~~~~~~~~~~~~~~~~~~~~~~Y---~~sK~~~e~  201 (404)
T 1i24_A          167 EEGYITITHNGRTDTLPYPKQASSFY---HLSKVHDSH  201 (404)
T ss_dssp             CSSEEEEEETTEEEEEECCCCCCSHH---HHHHHHHHH
T ss_pred             CccccccccccccccccCCCCCCChh---HHHHHHHHH
Confidence            77643211         244455667   888999875

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=3e-21  Score=145.73  Aligned_cols=135  Identities=17%  Similarity=0.144  Sum_probs=103.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~a  105 (190)
                      .+|+|+||||+|+||+++++.|+++ |++|+++.|+.......      ...+.++.+|+.|.+     +.++|+|||+|
T Consensus         3 ~m~~ilItGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   75 (227)
T 3dhn_A            3 KVKKIVLIGASGFVGSALLNEALNR-GFEVTAVVRHPEKIKIE------NEHLKVKKADVSSLDEVCEVCKGADAVISAF   75 (227)
T ss_dssp             CCCEEEEETCCHHHHHHHHHHHHTT-TCEEEEECSCGGGCCCC------CTTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHC-CCEEEEEEcCcccchhc------cCceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence            3589999999999999999999999 89999999975543221      257899999999864     35799999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHH
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKL  184 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~  184 (190)
                      |....      ....+++|+.++.++++++++.++ |+||+||.++|....... .|+     .+..+...|   +.+|+
T Consensus        76 ~~~~~------~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-~~~-----~~~~p~~~Y---~~sK~  140 (227)
T 3dhn_A           76 NPGWN------NPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLR-LMD-----SGEVPENIL---PGVKA  140 (227)
T ss_dssp             CC------------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETTEE-GGG-----TTCSCGGGH---HHHHH
T ss_pred             cCCCC------ChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCCCc-ccc-----CCcchHHHH---HHHHH
Confidence            85421      123678899999999999999987 999999998766433322 333     344455677   88899


Q ss_pred             hhh
Q 029640          185 IGE  187 (190)
Q Consensus       185 ~~E  187 (190)
                      ..|
T Consensus       141 ~~e  143 (227)
T 3dhn_A          141 LGE  143 (227)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            988

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=99.85  E-value=6e-21  Score=159.39  Aligned_cols=152  Identities=24%  Similarity=0.260  Sum_probs=114.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcC--CCeEEEEcCCCCCCh--hhhhhhhc--------------CCceEEEecccc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSK--DNLRKWIG--------------HPRFELIRHDVT   91 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~--~~~v~~~~r~~~~~~--~~~~~~~~--------------~~~~~~~~~D~~   91 (190)
                      ..+|+|+||||+||||+++++.|+++.  +++|+++.|+.....  ..+.....              ..++.++.+|+.
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~  150 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKS  150 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECC
Confidence            468999999999999999999999984  589999999754321  11111111              258999999998


Q ss_pred             cccc-----------CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCC
Q 029640           92 EPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQ  159 (190)
Q Consensus        92 ~~~~-----------~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~  159 (190)
                      +..+           .++|+|||+||....    .+..+.+++|+.++.+++++|.+.++ +|||+||.++|+.....++
T Consensus       151 ~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~~~~~  226 (478)
T 4dqv_A          151 EPDLGLDQPMWRRLAETVDLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAF  226 (478)
T ss_dssp             SGGGGCCHHHHHHHHHHCCEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSCTTTC
T ss_pred             CcccCCCHHHHHHHHcCCCEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccCCCCc
Confidence            6532           359999999997653    45667899999999999999999886 9999999999998777778


Q ss_pred             CCCCccC-CCC-----CCcccchhhhhHHHHhhhh
Q 029640          160 DESYWGN-VNP-----IGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       160 ~e~~~~~-~~~-----~~~~~~y~~~~~sK~~~E~  188 (190)
                      +|+.... ..+     ....+.|   +.||+.+|+
T Consensus       227 ~E~~~~~p~~~~~~~~~~~~~~Y---~~sK~~~E~  258 (478)
T 4dqv_A          227 TEDADIRVISPTRTVDGGWAGGY---GTSKWAGEV  258 (478)
T ss_dssp             CSSSCHHHHCCEEECCTTSEECH---HHHHHHHHH
T ss_pred             CCcccccccCcccccccccccch---HHHHHHHHH
Confidence            8874210 011     0111346   888999985

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=99.85  E-value=1.2e-20  Score=143.42  Aligned_cols=133  Identities=17%  Similarity=0.250  Sum_probs=100.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCce-EEEeccccc---cccCCcCEEEEcc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRF-ELIRHDVTE---PLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~D~~~---~~~~~~d~vi~~a  105 (190)
                      +++|+|+||||+|+||+++++.|+++ |++|+++.|+......    +. ..++ .++.+|+.+   ..+.++|+|||+|
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~~~~~~----~~-~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~a   92 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNK-GHEPVAMVRNEEQGPE----LR-ERGASDIVVANLEEDFSHAFASIDAVVFAA   92 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHH----HH-HTTCSEEEECCTTSCCGGGGTTCSEEEECC
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhC-CCeEEEEECChHHHHH----HH-hCCCceEEEcccHHHHHHHHcCCCEEEECC
Confidence            58899999999999999999999999 8999999997543322    21 2367 899999982   2345799999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHH
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKL  184 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~  184 (190)
                      |...    ...+...+++|+.++.++++++++.+. ++|++||.+.+..       |.     .+ .+...|   +.+|+
T Consensus        93 g~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~-------~~-----~~-~~~~~Y---~~sK~  152 (236)
T 3e8x_A           93 GSGP----HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDP-------DQ-----GP-MNMRHY---LVAKR  152 (236)
T ss_dssp             CCCT----TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCG-------GG-----SC-GGGHHH---HHHHH
T ss_pred             CCCC----CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCC-------CC-----Ch-hhhhhH---HHHHH
Confidence            8654    246778899999999999999998886 8999999443321       22     11 233456   88899


Q ss_pred             hhhh
Q 029640          185 IGEL  188 (190)
Q Consensus       185 ~~E~  188 (190)
                      ..|.
T Consensus       153 ~~e~  156 (236)
T 3e8x_A          153 LADD  156 (236)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9885

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=99.85  E-value=7.8e-21  Score=152.72  Aligned_cols=141  Identities=23%  Similarity=0.335  Sum_probs=107.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cC-----CcC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI-----EVD   99 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~-----~~d   99 (190)
                      ++|+|+||||+||||+++++.|+++ | ++|++++|......  ...+   ..+. +.+|+.+..     ..     ++|
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~--~~~~---~~~~-~~~d~~~~~~~~~~~~~~~~~~~d  117 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDK-GITDILVVDNLKDGTK--FVNL---VDLN-IADYMDKEDFLIQIMAGEEFGDVE  117 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHT-TCCCEEEEECCSSGGG--GGGT---TTSC-CSEEEEHHHHHHHHHTTCCCSSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCcEEEEEecCCCcch--hhcc---cCce-EeeecCcHHHHHHHHhhcccCCCC
Confidence            5689999999999999999999999 7 89999988654321  1111   1222 556776642     12     599


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhh
Q 029640          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKD  179 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~  179 (190)
                      +|||+||....  ...+++..+++|+.++.+++++|.+.++++||+||..+|+.....+++|+     .+..+...|   
T Consensus       118 ~Vih~A~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~r~V~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y---  187 (357)
T 2x6t_A          118 AIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVF---  187 (357)
T ss_dssp             EEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGCSCSSCCCSSG-----GGCCCSSHH---
T ss_pred             EEEECCcccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcchHHhCCCCCCCcCCc-----CCCCCCChh---
Confidence            99999987654  34567788999999999999999988779999999999997766678887     355555677   


Q ss_pred             hHHHHhhhh
Q 029640          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      +.+|+.+|+
T Consensus       188 ~~sK~~~E~  196 (357)
T 2x6t_A          188 GYSKFLFDE  196 (357)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888999885

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=99.85  E-value=5.5e-21  Score=151.24  Aligned_cols=134  Identities=19%  Similarity=0.270  Sum_probs=104.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cC--CcCEEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI--EVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~--~~d~vi~  103 (190)
                      ++|+|+||||+||||+++++.|+++ |++|+++.|+.                   .+|+.|..     +.  ++|+|||
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~v~~~~r~~-------------------~~D~~d~~~~~~~~~~~~~d~vih   61 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQR-GDVELVLRTRD-------------------ELNLLDSRAVHDFFASERIDQVYL   61 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTC-TTEEEECCCTT-------------------TCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhC-CCeEEEEecCc-------------------cCCccCHHHHHHHHHhcCCCEEEE
Confidence            4689999999999999999999998 88888887742                   14666542     23  7999999


Q ss_pred             ccCCCCC-cccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcc-cchhhhh
Q 029640          104 LACPASP-IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMF-SFVLKDG  180 (190)
Q Consensus       104 ~ag~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~-~~y~~~~  180 (190)
                      +|+.... ..+..++...+++|+.++.+++++|++.++ ++||+||.++|+.....+++|+.+.. .+..+. +.|   +
T Consensus        62 ~a~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y---~  137 (321)
T 1e6u_A           62 AAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQ-GTLEPTNEPY---A  137 (321)
T ss_dssp             CCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTS-SCCCGGGHHH---H
T ss_pred             cCeecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCcccccc-CCCCCCCCcc---H
Confidence            9986542 123456778899999999999999999887 99999999999977667788875321 123332 356   8


Q ss_pred             HHHHhhhh
Q 029640          181 IMKLIGEL  188 (190)
Q Consensus       181 ~sK~~~E~  188 (190)
                      .+|+.+|+
T Consensus       138 ~sK~~~E~  145 (321)
T 1e6u_A          138 IAKIAGIK  145 (321)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88999985

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.84  E-value=1.8e-20  Score=162.05  Aligned_cols=152  Identities=26%  Similarity=0.407  Sum_probs=118.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------cCCcCEEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYH  103 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~~d~vi~  103 (190)
                      +++|+|+||||+||||+++++.|+++++++|+++.|+......    +....++.++.+|+.+..      +.++|+|||
T Consensus       313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~----~~~~~~v~~v~~Dl~d~~~~~~~~~~~~D~Vih  388 (660)
T 1z7e_A          313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR----FLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLP  388 (660)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGG----GTTCTTEEEEECCTTTCHHHHHHHHHHCSEEEE
T ss_pred             ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhh----hccCCceEEEECCCCCcHHHHHHhhcCCCEEEE
Confidence            4678999999999999999999999756899999997554322    222457899999999853      136999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccC-CCCC-CcccchhhhhH
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-VNPI-GMFSFVLKDGI  181 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~-~~~~-~~~~~y~~~~~  181 (190)
                      +||...+.....++...+++|+.++.+++++|.+.+.|+||+||.++|+.....+++|+.+.. ..+. .+.+.|   +.
T Consensus       389 ~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y---~~  465 (660)
T 1z7e_A          389 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY---SV  465 (660)
T ss_dssp             CCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTHHH---HH
T ss_pred             CceecCccccccCHHHHHHhhhHHHHHHHHHHHHhCCEEEEEecHHHcCCCCCcccCCCccccccCcccCCCCCc---HH
Confidence            999766544455777889999999999999999887899999999999987666788885421 1111 234466   88


Q ss_pred             HHHhhhh
Q 029640          182 MKLIGEL  188 (190)
Q Consensus       182 sK~~~E~  188 (190)
                      ||+.+|+
T Consensus       466 sK~~~E~  472 (660)
T 1z7e_A          466 SKQLLDR  472 (660)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8999985

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=99.84  E-value=9.5e-21  Score=149.62  Aligned_cols=136  Identities=31%  Similarity=0.376  Sum_probs=107.2

Q ss_pred             EEEEEcccchHHHHHHHHHHhc-CCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----C--CcCEEEEcc
Q 029640           34 RILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHLA  105 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~-~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~--~~d~vi~~a  105 (190)
                      +|+||||+||||+++++.|+++ ++++|++++|+.....          ++.++.+|+.|...     .  ++|+|||+|
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~----------~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a   70 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG----------GIKFITLDVSNRDEIDRAVEKYSIDAIFHLA   70 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT----------TCCEEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc----------CceEEEecCCCHHHHHHHHhhcCCcEEEECC
Confidence            4899999999999999999997 4688999888654321          45678899998632     2  799999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCC-CCCCCCCCccCCCCCCcccchhhhhHHH
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL-VHPQDESYWGNVNPIGMFSFVLKDGIMK  183 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~-~~~~~e~~~~~~~~~~~~~~y~~~~~sK  183 (190)
                      +.... ....++...+++|+.++.+++++|++.++ ++|++||.++|+... ..+.+|+     .+..+.+.|   +.+|
T Consensus        71 ~~~~~-~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~-----~~~~p~~~Y---~~sK  141 (317)
T 3ajr_A           71 GILSA-KGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSI-----TITRPRTMF---GVTK  141 (317)
T ss_dssp             CCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSS-----SCCCCCSHH---HHHH
T ss_pred             cccCC-ccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCcccc-----ccCCCCchH---HHHH
Confidence            86542 23456778899999999999999999887 999999999999643 2345555     455556677   8889


Q ss_pred             Hhhhh
Q 029640          184 LIGEL  188 (190)
Q Consensus       184 ~~~E~  188 (190)
                      +.+|+
T Consensus       142 ~~~e~  146 (317)
T 3ajr_A          142 IAAEL  146 (317)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99885

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.84  E-value=1.8e-20  Score=149.35  Aligned_cols=151  Identities=24%  Similarity=0.336  Sum_probs=105.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc----CCceEEEecccccccc-----CCcCEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLL-----IEVDQI  101 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~-----~~~d~v  101 (190)
                      ++++|+||||+||||+++++.|+++ |++|+++.|+..... ....+..    ..++.++.+|+.|...     .++|+|
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   81 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLER-GYTVRATVRDPTNVK-KVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGV   81 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCTTCHH-HHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEECCcchhH-HHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEE
Confidence            5689999999999999999999999 899998888654221 1111111    1257889999998643     469999


Q ss_pred             EEccCCCCCcccccCc-hhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecce-ecCCC-CCCCCCCCCccCCCC---C-Cc
Q 029640          102 YHLACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSE-VYGDP-LVHPQDESYWGNVNP---I-GM  172 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~-~~~~~-~~~~~~e~~~~~~~~---~-~~  172 (190)
                      ||+|+...  ....++ ...+++|+.++.+++++|.+.+ + |+||+||.. +|+.. ...+++|+.|.+.+.   . .+
T Consensus        82 ih~A~~~~--~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~  159 (337)
T 2c29_D           82 FHVATPMD--FESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMT  159 (337)
T ss_dssp             EECCCCCC--SSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCCT
T ss_pred             EEeccccC--CCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCCc
Confidence            99998652  122233 3578999999999999999877 5 899999987 45432 233567775432111   1 12


Q ss_pred             ccchhhhhHHHHhhhh
Q 029640          173 FSFVLKDGIMKLIGEL  188 (190)
Q Consensus       173 ~~~y~~~~~sK~~~E~  188 (190)
                      ...|   +.||+.+|+
T Consensus       160 ~~~Y---~~sK~~~E~  172 (337)
T 2c29_D          160 AWMY---FVSKTLAEQ  172 (337)
T ss_dssp             THHH---HHHHHHHHH
T ss_pred             cchH---HHHHHHHHH
Confidence            2346   888999885

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=99.84  E-value=2.8e-20  Score=145.03  Aligned_cols=130  Identities=18%  Similarity=0.097  Sum_probs=102.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP  110 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~  110 (190)
                      ++|+|+|||+ ||||+++++.|+++ |++|+++.|+......    +. ..+++++.+|+.|..+.++|+|||+|+....
T Consensus         4 m~~~ilVtGa-G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~----~~-~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~   76 (286)
T 3ius_A            4 MTGTLLSFGH-GYTARVLSRALAPQ-GWRIIGTSRNPDQMEA----IR-ASGAEPLLWPGEEPSLDGVTHLLISTAPDSG   76 (286)
T ss_dssp             -CCEEEEETC-CHHHHHHHHHHGGG-TCEEEEEESCGGGHHH----HH-HTTEEEEESSSSCCCCTTCCEEEECCCCBTT
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHHC-CCEEEEEEcChhhhhh----Hh-hCCCeEEEecccccccCCCCEEEECCCcccc
Confidence            4589999998 99999999999999 8999999996543221    11 2478999999998777789999999986543


Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHH--cCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhhh
Q 029640          111 IFYKYNPVKTIKTNVIGTLNMLGLAKR--VGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGE  187 (190)
Q Consensus       111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~--~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E  187 (190)
                      .    .         ..+.++++++++  .++ ++||+||.++|+.....+++|+     .+..+.+.|   +.+|+.+|
T Consensus        77 ~----~---------~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~-----~~~~p~~~Y---~~sK~~~E  135 (286)
T 3ius_A           77 G----D---------PVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDET-----TPLTPTAAR---GRWRVMAE  135 (286)
T ss_dssp             B----C---------HHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTT-----SCCCCCSHH---HHHHHHHH
T ss_pred             c----c---------HHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCC-----CCCCCCCHH---HHHHHHHH
Confidence            1    1         124678888888  555 8999999999998877788888     456666778   88899998


Q ss_pred             h
Q 029640          188 L  188 (190)
Q Consensus       188 ~  188 (190)
                      +
T Consensus       136 ~  136 (286)
T 3ius_A          136 Q  136 (286)
T ss_dssp             H
T ss_pred             H
Confidence            6

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=99.84  E-value=1.6e-20  Score=163.23  Aligned_cols=150  Identities=27%  Similarity=0.423  Sum_probs=114.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh--hcCCceEEEecccccccc-----C--CcCE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPLL-----I--EVDQ  100 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~-----~--~~d~  100 (190)
                      +++|+|+||||+|+||+++++.|+++ |++|++++|...........+  ....++.++.+|+.+...     .  ++|+
T Consensus         9 ~~~~~ilVTGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~   87 (699)
T 1z45_A            9 STSKIVLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDS   87 (699)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCE
Confidence            36789999999999999999999999 899999988765443222221  113467889999998632     2  6999


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCC----CCCCCCCCccCCCCCCcccc
Q 029640          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL----VHPQDESYWGNVNPIGMFSF  175 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~----~~~~~e~~~~~~~~~~~~~~  175 (190)
                      |||+||..........+.+.+++|+.++.+++++|++.++ ++|++||.++|+...    ..+++|+     .+..+...
T Consensus        88 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~-----~~~~p~~~  162 (699)
T 1z45_A           88 VIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEE-----CPLGPTNP  162 (699)
T ss_dssp             EEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTT-----SCCCCCSH
T ss_pred             EEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCcccc-----CCCCCCCh
Confidence            9999997654333445677899999999999999998886 899999999998642    2356666     34455567


Q ss_pred             hhhhhHHHHhhhh
Q 029640          176 VLKDGIMKLIGEL  188 (190)
Q Consensus       176 y~~~~~sK~~~E~  188 (190)
                      |   +.+|+.+|+
T Consensus       163 Y---~~sK~~~E~  172 (699)
T 1z45_A          163 Y---GHTKYAIEN  172 (699)
T ss_dssp             H---HHHHHHHHH
T ss_pred             H---HHHHHHHHH
Confidence            7   888999885

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=99.84  E-value=1.5e-20  Score=148.67  Aligned_cols=151  Identities=25%  Similarity=0.316  Sum_probs=101.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC-CCCC--Chhhhhhhhc-CCceEEEecccccccc-----CCcCEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN-YFTG--SKDNLRKWIG-HPRFELIRHDVTEPLL-----IEVDQIY  102 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r-~~~~--~~~~~~~~~~-~~~~~~~~~D~~~~~~-----~~~d~vi  102 (190)
                      +++|+||||+||||+++++.|+++ |++|+++.| +...  ....+..+.. ..++.++.+|+.|...     .++|+||
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   79 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLEN-GYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIF   79 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEE
T ss_pred             CCEEEEECChhHHHHHHHHHHHHC-CCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEE
Confidence            478999999999999999999999 899998887 4321  1111111110 1257888999998643     4699999


Q ss_pred             EccCCCCCcccccC-chhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecceec-CCC-CCCCCCCCCccCCCC---CCccc
Q 029640          103 HLACPASPIFYKYN-PVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVY-GDP-LVHPQDESYWGNVNP---IGMFS  174 (190)
Q Consensus       103 ~~ag~~~~~~~~~~-~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~~~~-~~~-~~~~~~e~~~~~~~~---~~~~~  174 (190)
                      |+|+..  .....+ ....+++|+.++.+++++|.+. ++ ++|++||..++ +.+ ...+++|+.|.+...   ..+..
T Consensus        80 h~A~~~--~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~  157 (322)
T 2p4h_X           80 HTASPI--DFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFG  157 (322)
T ss_dssp             ECCCCC----------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTT
T ss_pred             EcCCcc--cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCccc
Confidence            999754  222223 3458999999999999999987 55 99999998854 332 223567765422111   11111


Q ss_pred             -chhhhhHHHHhhhh
Q 029640          175 -FVLKDGIMKLIGEL  188 (190)
Q Consensus       175 -~y~~~~~sK~~~E~  188 (190)
                       .|   +.||+.+|+
T Consensus       158 ~~Y---~~sK~~~e~  169 (322)
T 2p4h_X          158 WNY---AVSKTLAEK  169 (322)
T ss_dssp             HHH---HHHHHHHHH
T ss_pred             ccH---HHHHHHHHH
Confidence             46   888999885

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=99.83  E-value=3e-20  Score=146.12  Aligned_cols=138  Identities=23%  Similarity=0.354  Sum_probs=106.9

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cC-----CcCEEE
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LI-----EVDQIY  102 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~-----~~d~vi  102 (190)
                      +|+||||+||||+++++.|+++ | ++|++++|......  ...+.   .+. +.+|+.+..     ..     ++|+||
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~-g~~~V~~~~r~~~~~~--~~~~~---~~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi   73 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDK-GITDILVVDNLKDGTK--FVNLV---DLN-IADYMDKEDFLIQIMAGEEFGDVEAIF   73 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTT-TCCCEEEEECCSSGGG--GHHHH---TSC-CSEEEEHHHHHHHHHTTCCCSSCCEEE
T ss_pred             CEEEEcCccHHHHHHHHHHHHC-CCcEEEEEccCCCCch--hhhcC---cce-eccccccHHHHHHHHhccccCCCcEEE
Confidence            4899999999999999999999 7 89999988654321  11111   122 556776642     22     499999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHH
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIM  182 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~s  182 (190)
                      |+||....  +..++...+++|+.++.+++++|++.++++|++||.++|+.....+++|+     .+..+.+.|   +.+
T Consensus        74 ~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~-----~~~~p~~~Y---~~s  143 (310)
T 1eq2_A           74 HEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVY---GYS  143 (310)
T ss_dssp             ECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSG-----GGCCCSSHH---HHH
T ss_pred             ECcccccC--cccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeHHHhCCCCCCCCCCC-----CCCCCCChh---HHH
Confidence            99987654  34567788999999999999999988779999999999998766678887     355555677   888


Q ss_pred             HHhhhh
Q 029640          183 KLIGEL  188 (190)
Q Consensus       183 K~~~E~  188 (190)
                      |+.+|+
T Consensus       144 K~~~e~  149 (310)
T 1eq2_A          144 KFLFDE  149 (310)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999885

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=99.83  E-value=3.2e-20  Score=143.56  Aligned_cols=132  Identities=26%  Similarity=0.261  Sum_probs=105.7

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----C--CcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~--~~d~vi~~a  105 (190)
                      |+++||||+|+||+++++.|+ + +++|+++.|+....          .+   +.+|+.|...     .  ++|+|||+|
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~-g~~V~~~~r~~~~~----------~~---~~~Dl~~~~~~~~~~~~~~~d~vi~~a   65 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLS-E-RHEVIKVYNSSEIQ----------GG---YKLDLTDFPRLEDFIIKKRPDVIINAA   65 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHT-T-TSCEEEEESSSCCT----------TC---EECCTTSHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCChhHHHHHHHHh-c-CCeEEEecCCCcCC----------CC---ceeccCCHHHHHHHHHhcCCCEEEECC
Confidence            579999999999999999999 5 68999999876421          12   7789988642     2  499999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHh
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      |......+..++...+++|+.++.++++++.+.+.++|++||.++|+.... +++|+     .+..+...|   +.+|+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv~~SS~~~~~~~~~-~~~e~-----~~~~~~~~Y---~~sK~~  136 (273)
T 2ggs_A           66 AMTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTDYVFDGEKG-NYKEE-----DIPNPINYY---GLSKLL  136 (273)
T ss_dssp             CCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGSCSSSC-SBCTT-----SCCCCSSHH---HHHHHH
T ss_pred             cccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEEEEecceeEcCCCC-CcCCC-----CCCCCCCHH---HHHHHH
Confidence            976543345577889999999999999999988889999999999986543 77777     344555677   888999


Q ss_pred             hhh
Q 029640          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      .|.
T Consensus       137 ~e~  139 (273)
T 2ggs_A          137 GET  139 (273)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            886

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=99.83  E-value=5.5e-20  Score=147.56  Aligned_cols=136  Identities=26%  Similarity=0.378  Sum_probs=105.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhc-CCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~-~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~  103 (190)
                      +++|+|+||||+|+||+++++.|+++ +..+|++++|+....... .......++.++.+|+.|..     +.++|+|||
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~-~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih   97 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEM-AMEFNDPRMRFFIGDVRDLERLNYALEGVDICIH   97 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHH-HHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHH-HHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEE
Confidence            47899999999999999999999998 545999999864332221 12222457899999999864     357999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHH
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIM  182 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~s  182 (190)
                      +||......++.++.+.+++|+.++.+++++|.+.++ ++|++||..++.                   +.+.|   +.|
T Consensus        98 ~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~~-------------------p~~~Y---~~s  155 (344)
T 2gn4_A           98 AAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAAN-------------------PINLY---GAT  155 (344)
T ss_dssp             CCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSS-------------------CCSHH---HHH
T ss_pred             CCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccCC-------------------CccHH---HHH
Confidence            9997654444556788999999999999999999987 899999965431                   12467   888


Q ss_pred             HHhhhh
Q 029640          183 KLIGEL  188 (190)
Q Consensus       183 K~~~E~  188 (190)
                      |+.+|+
T Consensus       156 K~~~E~  161 (344)
T 2gn4_A          156 KLCSDK  161 (344)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999885

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=99.81  E-value=3e-20  Score=139.75  Aligned_cols=128  Identities=18%  Similarity=0.249  Sum_probs=100.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccc-cc-----cCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PL-----LIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~-----~~~~d~vi~~ag  106 (190)
                      |+|+||||+|+||+++++.|+++ |++|+++.|+......       ..++.++++|+.| .+     +.++|+|||+||
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag   72 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTT-DYQIYAGARKVEQVPQ-------YNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSG   72 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTS-SCEEEEEESSGGGSCC-------CTTEEEEECCTTSCHHHHHTTTTTCSEEEECCC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCccchhh-------cCCceEEEecccCCHHHHHHHHcCCCEEEECCc
Confidence            58999999999999999999999 8999999997654322       1478999999999 42     457999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHh
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      ....        ..+++|+.++.++++++++.++ ++|++||.+++...   +..|      .+..+...|   +.+|+.
T Consensus        73 ~~~~--------~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~---~~~e------~~~~~~~~Y---~~sK~~  132 (219)
T 3dqp_A           73 SGGK--------SLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPE---KWIG------AGFDALKDY---YIAKHF  132 (219)
T ss_dssp             CTTS--------SCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGG---GCCS------HHHHHTHHH---HHHHHH
T ss_pred             CCCC--------CcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCC---cccc------cccccccHH---HHHHHH
Confidence            6542        2567899999999999999886 89999998766532   2333      122334456   888999


Q ss_pred             hhh
Q 029640          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      .|+
T Consensus       133 ~e~  135 (219)
T 3dqp_A          133 ADL  135 (219)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            885

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=99.81  E-value=3.4e-19  Score=139.89  Aligned_cols=125  Identities=24%  Similarity=0.299  Sum_probs=94.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCCc-
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI-  111 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~~-  111 (190)
                      |||+||||+||||++|++.|+++ |++|+++.|++...           .+.+  .++....+.++|+|||+|+..... 
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~-G~~V~~l~R~~~~~-----------~~~~--~~~~~~~l~~~d~vihla~~~i~~~   66 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNAR-GHEVTLVSRKPGPG-----------RITW--DELAASGLPSCDAAVNLAGENILNP   66 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCTT-----------EEEH--HHHHHHCCCSCSEEEECCCCCSSCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCcC-----------eeec--chhhHhhccCCCEEEEeccCcccch
Confidence            78999999999999999999999 89999999965432           1221  122223456899999999843221 


Q ss_pred             ---ccccCchhHHHHHHHHHHHHHHHHHHcCC---eEEEEecceecCCCCCCCCCCCCccCCCCCCcccch
Q 029640          112 ---FYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFV  176 (190)
Q Consensus       112 ---~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y  176 (190)
                         +.......+++.|+.++.+++++++..+.   ++|++||+++|+.....+++|+     .|..+...|
T Consensus        67 ~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~-----~p~~~~~~~  132 (298)
T 4b4o_A           67 LRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDED-----SPGGDFDFF  132 (298)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTT-----CCCSCSSHH
T ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCccccc-----CCccccchh
Confidence               22334456789999999999999988764   5889999999999888888888     455544455

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.81  E-value=7.7e-20  Score=137.62  Aligned_cols=135  Identities=13%  Similarity=0.010  Sum_probs=100.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc---cCCcCEEEEccCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---LIEVDQIYHLACPAS  109 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~d~vi~~ag~~~  109 (190)
                      |+|+||||+|+||+++++.|+++ |++|+++.|+...    ...+. ..++.++.+|+.|..   +.++|+|||+||...
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~----~~~~~-~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~   74 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRR-GHEVLAVVRDPQK----AADRL-GATVATLVKEPLVLTEADLDSVDAVVDALSVPW   74 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHH----HHHHT-CTTSEEEECCGGGCCHHHHTTCSEEEECCCCCT
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHC-CCEEEEEEecccc----ccccc-CCCceEEecccccccHhhcccCCEEEECCccCC
Confidence            57999999999999999999999 8999999996432    22222 357899999999874   467999999998752


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCC---CCCCCCCccCCCCCCcccchhhhhHHHHhh
Q 029640          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLV---HPQDESYWGNVNPIGMFSFVLKDGIMKLIG  186 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~---~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~  186 (190)
                      ..       ....+|+.++.++++++++.+.|+|++||++.+.....   .+.+|.     ....+...|   +.+|+..
T Consensus        75 ~~-------~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~-----~~~~~~~~y---~~sK~~~  139 (224)
T 3h2s_A           75 GS-------GRGYLHLDFATHLVSLLRNSDTLAVFILGSASLAMPGADHPMILDFP-----ESAASQPWY---DGALYQY  139 (224)
T ss_dssp             TS-------SCTHHHHHHHHHHHHTCTTCCCEEEEECCGGGSBCTTCSSCGGGGCC-----GGGGGSTTH---HHHHHHH
T ss_pred             Cc-------chhhHHHHHHHHHHHHHHHcCCcEEEEecceeeccCCCCccccccCC-----CCCccchhh---HHHHHHH
Confidence            11       12467999999999999998889999999875543222   123332     222234566   8889988


Q ss_pred             hh
Q 029640          187 EL  188 (190)
Q Consensus       187 E~  188 (190)
                      |.
T Consensus       140 e~  141 (224)
T 3h2s_A          140 YE  141 (224)
T ss_dssp             HH
T ss_pred             HH
Confidence            73

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=99.81  E-value=1.8e-19  Score=148.20  Aligned_cols=148  Identities=22%  Similarity=0.186  Sum_probs=104.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh--h----hhhh-------hcCCceEEEeccccccc---
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD--N----LRKW-------IGHPRFELIRHDVTEPL---   94 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~--~----~~~~-------~~~~~~~~~~~D~~~~~---   94 (190)
                      .+++|+||||+|+||+++++.|++. +++|+++.|+......  .    +...       ....++.++.+|+.+..   
T Consensus        68 ~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~  146 (427)
T 4f6c_A           68 PLGNTLLTGATGFLGAYLIEALQGY-SHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV  146 (427)
T ss_dssp             CCEEEEEECTTSHHHHHHHHHHTTT-EEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHcC-CCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC
Confidence            4679999999999999999999877 8999999997652111  1    1110       01258899999999853   


Q ss_pred             -cCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCC-----CCCCCCCCCCccCCC
Q 029640           95 -LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD-----PLVHPQDESYWGNVN  168 (190)
Q Consensus        95 -~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~-----~~~~~~~e~~~~~~~  168 (190)
                       ..++|+|||+||....   ..++...+++|+.++.+++++|.+...+|||+||.++ |.     ....+++|+.+.  .
T Consensus       147 ~~~~~d~Vih~A~~~~~---~~~~~~~~~~Nv~g~~~l~~aa~~~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~--~  220 (427)
T 4f6c_A          147 LPENMDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTYFDIDTEDVTFSEADVY--K  220 (427)
T ss_dssp             CSSCCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHHTTCEEEEEEEGGG-GSEECSSCSCCEECTTCSC--S
T ss_pred             CcCCCCEEEECCcccCC---CCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEECchHh-CCCccCCCCCccccccccc--c
Confidence             3479999999987642   3456778999999999999999994349999999998 53     234567777431  1


Q ss_pred             CCCcccchhhhhHHHHhhhh
Q 029640          169 PIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       169 ~~~~~~~y~~~~~sK~~~E~  188 (190)
                      +..+...|   +.+|+.+|+
T Consensus       221 ~~~~~~~Y---~~sK~~~E~  237 (427)
T 4f6c_A          221 GQLLTSPY---TRSKFYSEL  237 (427)
T ss_dssp             SCCCCSHH---HHHHHHHHH
T ss_pred             CCCCCCch---HHHHHHHHH
Confidence            13344567   888999985

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=99.80  E-value=9.3e-19  Score=133.25  Aligned_cols=129  Identities=15%  Similarity=0.048  Sum_probs=101.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCC--eEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIY  102 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi  102 (190)
                      +++|+++||||+|+||+++++.|+++ |+  +|++++|+........     ...+.++.+|+.|.+     +.++|+||
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~-G~~~~V~~~~r~~~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~d~vi   89 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQ-GLFSKVTLIGRRKLTFDEEA-----YKNVNQEVVDFEKLDDYASAFQGHDVGF   89 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHH-TCCSEEEEEESSCCCCCSGG-----GGGCEEEECCGGGGGGGGGGGSSCSEEE
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcC-CCCCEEEEEEcCCCCccccc-----cCCceEEecCcCCHHHHHHHhcCCCEEE
Confidence            46789999999999999999999999 78  9999999765443211     125788999999864     34699999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhH
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGI  181 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~  181 (190)
                      ||||....   ...++..+++|+.++.++++++++.+. ++|++||.++|+.+                  ...|   +.
T Consensus        90 ~~ag~~~~---~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~------------------~~~Y---~~  145 (242)
T 2bka_A           90 CCLGTTRG---KAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSS------------------NFLY---LQ  145 (242)
T ss_dssp             ECCCCCHH---HHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTTC------------------SSHH---HH
T ss_pred             ECCCcccc---cCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCCCC------------------cchH---HH
Confidence            99986432   123567889999999999999998886 99999998887621                  1356   77


Q ss_pred             HHHhhhh
Q 029640          182 MKLIGEL  188 (190)
Q Consensus       182 sK~~~E~  188 (190)
                      +|+..|.
T Consensus       146 sK~~~e~  152 (242)
T 2bka_A          146 VKGEVEA  152 (242)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7888775

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.80  E-value=4.3e-19  Score=133.05  Aligned_cols=132  Identities=11%  Similarity=0.135  Sum_probs=91.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc---cCCcCEEEEccCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---LIEVDQIYHLACPAS  109 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~d~vi~~ag~~~  109 (190)
                      |+|+||||+|+||+++++.|+++ |++|+++.|+...    ...+.  .++.++.+|+.|..   +.++|+|||+||...
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~----~~~~~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~   73 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNR-GHEVTAIVRNAGK----ITQTH--KDINILQKDIFDLTLSDLSDQNVVVDAYGISP   73 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCSHH----HHHHC--SSSEEEECCGGGCCHHHHTTCSEEEECCCSST
T ss_pred             CeEEEEcCCchhHHHHHHHHHhC-CCEEEEEEcCchh----hhhcc--CCCeEEeccccChhhhhhcCCCEEEECCcCCc
Confidence            57999999999999999999999 8999999996432    22222  57899999999874   467999999998632


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCC-CCCCCCCCCCccCCCCCCcccchhhhhHHHHhhh
Q 029640          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD-PLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGE  187 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~-~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E  187 (190)
                      .         ....|+.++.++++++++.+. |+|++||+++|.. +...+..|+     .+..+...|   +.+|...|
T Consensus        74 ~---------~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~-----~~~~~~~~y---~~~k~~~e  136 (221)
T 3ew7_A           74 D---------EAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLES-----KGLREAPYY---PTARAQAK  136 (221)
T ss_dssp             T---------TTTSHHHHHHHHHHHHCSCCSSEEEEECCCC------------------------CCCS---CCHHHHHH
T ss_pred             c---------ccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCcccccc-----CCCCCHHHH---HHHHHHHH
Confidence            1         145689999999999999875 9999999876543 333344444     344444567   66687776


Q ss_pred             h
Q 029640          188 L  188 (190)
Q Consensus       188 ~  188 (190)
                      .
T Consensus       137 ~  137 (221)
T 3ew7_A          137 Q  137 (221)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=99.80  E-value=6.9e-19  Score=137.99  Aligned_cols=149  Identities=14%  Similarity=0.075  Sum_probs=109.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------CCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d~v  101 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+..........+  ..++.++.+|++|...        .++|+|
T Consensus        14 l~gk~vlVTGas~gIG~~~a~~L~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~l   90 (291)
T 3rd5_A           14 FAQRTVVITGANSGLGAVTARELARR-GATVIMAVRDTRKGEAAARTM--AGQVEVRELDLQDLSSVRRFADGVSGADVL   90 (291)
T ss_dssp             CTTCEEEEECCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHTTS--SSEEEEEECCTTCHHHHHHHHHTCCCEEEE
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh--cCCeeEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence            47899999999999999999999999 899999999654433333322  3478999999998642        368999


Q ss_pred             EEccCCCCCc--ccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCC-CCCCCCCccCCCCCCcccchh
Q 029640          102 YHLACPASPI--FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV-HPQDESYWGNVNPIGMFSFVL  177 (190)
Q Consensus       102 i~~ag~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~-~~~~e~~~~~~~~~~~~~~y~  177 (190)
                      |||||...+.  ...+.++..+++|+.++.++++++..... |+|++||...+..... ....++    ..+..+...| 
T Consensus        91 v~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~----~~~~~~~~~Y-  165 (291)
T 3rd5_A           91 INNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWR----SRRYSPWLAY-  165 (291)
T ss_dssp             EECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCS----SSCCCHHHHH-
T ss_pred             EECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCccccccc----ccCCCCcchH-
Confidence            9999976543  23456778999999999999999988765 8999999887653221 111111    1334333445 


Q ss_pred             hhhHHHHhhhh
Q 029640          178 KDGIMKLIGEL  188 (190)
Q Consensus       178 ~~~~sK~~~E~  188 (190)
                        +.||+..+.
T Consensus       166 --~~sK~a~~~  174 (291)
T 3rd5_A          166 --SQSKLANLL  174 (291)
T ss_dssp             --HHHHHHHHH
T ss_pred             --HHHHHHHHH
Confidence              888988653

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=99.79  E-value=5.4e-19  Score=148.83  Aligned_cols=133  Identities=21%  Similarity=0.168  Sum_probs=99.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccc---cccCCcCEEEEccCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE---PLLIEVDQIYHLACPA  108 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~d~vi~~ag~~  108 (190)
                      +|+|+||||+||||++|++.|+++ |++|+++.|+.....          .   +.+|+.+   ..+.++|+|||+||..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~-G~~V~~l~R~~~~~~----------~---v~~d~~~~~~~~l~~~D~Vih~A~~~  212 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTG-GHEVIQLVRKEPKPG----------K---RFWDPLNPASDLLDGADVLVHLAGEP  212 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESSSCCTT----------C---EECCTTSCCTTTTTTCSEEEECCCC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCcc----------c---eeecccchhHHhcCCCCEEEECCCCc
Confidence            789999999999999999999999 899999999765421          1   3445543   3456799999999975


Q ss_pred             CC-cccccCchhHHHHHHHHHHHHHHH-HHHcCC-eEEEEecceecC-CCCCCCCCCCCccCCCCCCcccchhhhhHHHH
Q 029640          109 SP-IFYKYNPVKTIKTNVIGTLNMLGL-AKRVGA-RILLTSTSEVYG-DPLVHPQDESYWGNVNPIGMFSFVLKDGIMKL  184 (190)
Q Consensus       109 ~~-~~~~~~~~~~~~~n~~~~~~l~~~-~~~~~~-~~i~vSS~~~~~-~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~  184 (190)
                      .. .+....+..++++|+.++.+++++ ++..++ +|||+||+++|+ .....+++|+.     +. +...|   +.+|.
T Consensus       213 ~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~~-----~~-~~~~y---~~~~~  283 (516)
T 3oh8_A          213 IFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEES-----ES-GDDFL---AEVCR  283 (516)
T ss_dssp             ----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTTS-----CC-CSSHH---HHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCCC-----CC-CcChH---HHHHH
Confidence            43 233456677899999999999999 555565 899999999999 44455778874     22 34566   55576


Q ss_pred             hhh
Q 029640          185 IGE  187 (190)
Q Consensus       185 ~~E  187 (190)
                      ..|
T Consensus       284 ~~E  286 (516)
T 3oh8_A          284 DWE  286 (516)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            655

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=99.79  E-value=4.3e-19  Score=149.12  Aligned_cols=148  Identities=23%  Similarity=0.193  Sum_probs=105.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh------hhhhh-------hcCCceEEEeccccccc---
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD------NLRKW-------IGHPRFELIRHDVTEPL---   94 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~------~~~~~-------~~~~~~~~~~~D~~~~~---   94 (190)
                      .+|+|+||||+||||+++++.|++. +++|+++.|+......      .+...       ....++.++.+|+.+..   
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~  227 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGY-SHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV  227 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTT-EEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC
T ss_pred             CCCeEEEECCccchHHHHHHHHHhc-CCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC
Confidence            4589999999999999999999777 8999999997652111      01100       12458999999999843   


Q ss_pred             -cCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCC-----CCCCCCCCCCccCCC
Q 029640           95 -LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD-----PLVHPQDESYWGNVN  168 (190)
Q Consensus        95 -~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~-----~~~~~~~e~~~~~~~  168 (190)
                       ..++|+|||+||....   ..+....+++|+.++.+++++|++...++||+||.++ |.     ....+++|+++..  
T Consensus       228 ~~~~~D~Vih~Aa~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~~--  301 (508)
T 4f6l_B          228 LPENMDTIIHAGARTDH---FGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTYFDIDTEDVTFSEADVYK--  301 (508)
T ss_dssp             CSSCCSEEEECCCC-----------CCHHHHHHHHHHHHHHHHTTTCEEEEEEESCT-TSEECTTCSCCEECTTCSCS--
T ss_pred             CccCCCEEEECCceecC---CCCHHHHhhhHHHHHHHHHHHHHhCCCcEEEeCChhh-ccCCccCCcCcccccccccc--
Confidence             2479999999986642   3456678899999999999999985459999999998 43     2334677774311  


Q ss_pred             CCCcccchhhhhHHHHhhhh
Q 029640          169 PIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       169 ~~~~~~~y~~~~~sK~~~E~  188 (190)
                      +..+.+.|   +.+|+.+|+
T Consensus       302 ~~~~~~~Y---~~sK~~~E~  318 (508)
T 4f6l_B          302 GQLLTSPY---TRSKFYSEL  318 (508)
T ss_dssp             SBCCCSHH---HHHHHHHHH
T ss_pred             cccCCCcH---HHHHHHHHH
Confidence            12244567   888999986

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=99.79  E-value=1.1e-18  Score=129.30  Aligned_cols=130  Identities=16%  Similarity=0.154  Sum_probs=98.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~a  105 (190)
                      ++|+|+||||+|+||+++++.|+++ +++|+++.|+......    + ...++.++.+|+.|.+     +.++|+|||+|
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~l~~~-g~~V~~~~r~~~~~~~----~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a   75 (206)
T 1hdo_A            2 AVKKIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDSSRLPS----E-GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL   75 (206)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCGGGSCS----S-SCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHC-CCeEEEEEeChhhccc----c-cCCceEEEEecCCCHHHHHHHHcCCCEEEECc
Confidence            3479999999999999999999999 7999999997543321    1 1347889999999864     35799999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHH
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKL  184 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~  184 (190)
                      |....    ..+   .++|+.++.++++++++.+. ++|++||.++|+.....           +. +...|   +.+|.
T Consensus        76 ~~~~~----~~~---~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~-----------~~-~~~~y---~~~K~  133 (206)
T 1hdo_A           76 GTRND----LSP---TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKV-----------PP-RLQAV---TDDHI  133 (206)
T ss_dssp             CCTTC----CSC---CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCS-----------CG-GGHHH---HHHHH
T ss_pred             cCCCC----CCc---cchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCcccc-----------cc-cchhH---HHHHH
Confidence            86543    111   24789999999999999886 89999999988753221           11 23455   88899


Q ss_pred             hhhh
Q 029640          185 IGEL  188 (190)
Q Consensus       185 ~~E~  188 (190)
                      ..|.
T Consensus       134 ~~e~  137 (206)
T 1hdo_A          134 RMHK  137 (206)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.78  E-value=1e-18  Score=130.54  Aligned_cols=125  Identities=20%  Similarity=0.184  Sum_probs=100.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC--eEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCC---cCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIE---VDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~---~d~vi~~a  105 (190)
                      ++|+|+||||+|+||+++++.|+++ ++  +|+++.|+....         ..++.++.+|+.+.+...   +|+|||+|
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~-g~~~~V~~~~r~~~~~---------~~~~~~~~~D~~~~~~~~~~~~d~vi~~a   73 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAE---------HPRLDNPVGPLAELLPQLDGSIDTAFCCL   73 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHC-TTCCEEECCBSSCCCC---------CTTEECCBSCHHHHGGGCCSCCSEEEECC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhC-CCCCeEEEEeCCCccc---------CCCceEEeccccCHHHHHHhhhcEEEECe
Confidence            4689999999999999999999999 66  999999876541         246788889998764321   89999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHH
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKL  184 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~  184 (190)
                      |....  ....++..+++|+.++.++++++++.+. ++|++||..+|+.                  +...|   +.+|+
T Consensus        74 ~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~------------------~~~~y---~~sK~  130 (215)
T 2a35_A           74 GTTIK--EAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK------------------SSIFY---NRVKG  130 (215)
T ss_dssp             CCCHH--HHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT------------------CSSHH---HHHHH
T ss_pred             eeccc--cCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCCC------------------CccHH---HHHHH
Confidence            86532  2356778899999999999999999887 8999999888752                  11356   77799


Q ss_pred             hhhh
Q 029640          185 IGEL  188 (190)
Q Consensus       185 ~~E~  188 (190)
                      ..|+
T Consensus       131 ~~e~  134 (215)
T 2a35_A          131 ELEQ  134 (215)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=99.77  E-value=1e-17  Score=129.34  Aligned_cols=141  Identities=16%  Similarity=0.084  Sum_probs=102.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCC---CeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEK---NEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~---~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~----------   95 (190)
                      +++++++||||+|+||+++++.|+++ |   ++|+++.|+...... +..+. ...++.++.+|+.+.+.          
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~-G~~~~~V~~~~r~~~~~~~-~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   96 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNL-PQPPQHLFTTCRNREQAKE-LEDLAKNHSNIHILEIDLRNFDAYDKLVADIEG   96 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTS-SSCCSEEEEEESCTTSCHH-HHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhc-CCCCcEEEEEecChhhhHH-HHHhhccCCceEEEEecCCChHHHHHHHHHHHH
Confidence            47899999999999999999999999 6   899999997665442 23221 13578999999998742          


Q ss_pred             --C--CcCEEEEccCCCC-Cc----ccccCchhHHHHHHHHHHHHHHHHHHc----------------CCeEEEEeccee
Q 029640           96 --I--EVDQIYHLACPAS-PI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----------------GARILLTSTSEV  150 (190)
Q Consensus        96 --~--~~d~vi~~ag~~~-~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----------------~~~~i~vSS~~~  150 (190)
                        .  ++|+||||||... ..    ...+..+..+++|+.++.++++++...                ..++|++||...
T Consensus        97 ~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~  176 (267)
T 1sny_A           97 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILG  176 (267)
T ss_dssp             HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGG
T ss_pred             hcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEecccc
Confidence              1  6999999999765 11    122345567999999999998887543                348999999876


Q ss_pred             cCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhhhh
Q 029640          151 YGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       151 ~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      +....             +..+...|   +.||+..|.
T Consensus       177 ~~~~~-------------~~~~~~~Y---~~sK~a~~~  198 (267)
T 1sny_A          177 SIQGN-------------TDGGMYAY---RTSKSALNA  198 (267)
T ss_dssp             CSTTC-------------CSCCCHHH---HHHHHHHHH
T ss_pred             cccCC-------------CCCCchHH---HHHHHHHHH
Confidence            65321             11122345   888988764

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=99.76  E-value=7.3e-18  Score=128.58  Aligned_cols=115  Identities=19%  Similarity=0.160  Sum_probs=89.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~  104 (190)
                      ++|+|+||||+|+||+++++.|++++ +++|+++.|+..    ....+  ..++.++.+|+.|.+     +.++|+|||+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~----~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~   76 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ----GKEKI--GGEADVFIGDITDADSINPAFQGIDALVIL   76 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHH----HHHHT--TCCTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCC----chhhc--CCCeeEEEecCCCHHHHHHHHcCCCEEEEe
Confidence            67899999999999999999999985 689999998532    22222  236778899999864     3579999999


Q ss_pred             cCCCCCcc-------------cccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceec
Q 029640          105 ACPASPIF-------------YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY  151 (190)
Q Consensus       105 ag~~~~~~-------------~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~  151 (190)
                      ||......             ..+.....+++|+.++.++++++++.+. ++|++||.+++
T Consensus        77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~  137 (253)
T 1xq6_A           77 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGT  137 (253)
T ss_dssp             CCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTT
T ss_pred             ccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCC
Confidence            98653210             1112235689999999999999998886 89999998754

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.76  E-value=1.1e-17  Score=127.53  Aligned_cols=143  Identities=14%  Similarity=0.032  Sum_probs=101.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC--CeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------C
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~   96 (190)
                      ++++++||||+|+||+++++.|+++ |  ++|++++|+...... +..+ ...++.++.+|+.+...            .
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~-g~~~~V~~~~r~~~~~~~-l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKD-KNIRHIIATARDVEKATE-LKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIVG   78 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTC-TTCCEEEEEESSGGGCHH-HHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHHG
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhc-CCCcEEEEEecCHHHHHH-HHhc-cCCceEEEEeecCCHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999 7  899999997655432 2222 24578999999998632            1


Q ss_pred             --CcCEEEEccCCCC-Cc----ccccCchhHHHHHHHHHHHHHHHHHHc----------------CCeEEEEecceecCC
Q 029640           97 --EVDQIYHLACPAS-PI----FYKYNPVKTIKTNVIGTLNMLGLAKRV----------------GARILLTSTSEVYGD  153 (190)
Q Consensus        97 --~~d~vi~~ag~~~-~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~----------------~~~~i~vSS~~~~~~  153 (190)
                        ++|+||||||... ..    ...+..+..+++|+.++.++++++...                ..++|++||...+..
T Consensus        79 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~  158 (250)
T 1yo6_A           79 SDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSIT  158 (250)
T ss_dssp             GGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCST
T ss_pred             CCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccC
Confidence              7999999999765 11    122345567999999999988876432                348999999876543


Q ss_pred             CCCCCCCCCCccCCCCCCcccchhhhhHHHHhhhh
Q 029640          154 PLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       154 ~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      ...    +.     .+..+...|   +.||+..|.
T Consensus       159 ~~~----~~-----~~~~~~~~Y---~~sK~a~~~  181 (250)
T 1yo6_A          159 DNT----SG-----SAQFPVLAY---RMSKAAINM  181 (250)
T ss_dssp             TCC----ST-----TSSSCBHHH---HHHHHHHHH
T ss_pred             Ccc----cc-----cccCCccHH---HHHHHHHHH
Confidence            211    11     112233456   888988764

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=99.75  E-value=5.2e-18  Score=132.18  Aligned_cols=136  Identities=19%  Similarity=0.102  Sum_probs=99.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      ++++++||||+|+||+++++.|+++ |++|+++.|+.+.........  ...+.++.+|++|...            .++
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   80 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAA-GDTVIGTARRTEALDDLVAAY--PDRAEAISLDVTDGERIDVVAADVLARYGRV   80 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSGGGGHHHHHHC--TTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhc--cCCceEEEeeCCCHHHHHHHHHHHHHhCCCC
Confidence            5789999999999999999999999 899999999765544333322  3478999999998642            269


Q ss_pred             CEEEEccCCCCCc----ccccCchhHHHHHHHHHHHHHH----HHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCC
Q 029640           99 DQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLG----LAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNP  169 (190)
Q Consensus        99 d~vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~----~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~  169 (190)
                      |+||||||.....    ...+.++..+++|+.++.++.+    .+++.+. ++|++||...+..                
T Consensus        81 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------------  144 (281)
T 3m1a_A           81 DVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLS----------------  144 (281)
T ss_dssp             SEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCC----------------
T ss_pred             CEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCC----------------
Confidence            9999999965432    1223455689999999555554    4455565 9999999765432                


Q ss_pred             CCcccchhhhhHHHHhhhh
Q 029640          170 IGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       170 ~~~~~~y~~~~~sK~~~E~  188 (190)
                      ..+...|   +.||+..|.
T Consensus       145 ~~~~~~Y---~~sK~a~~~  160 (281)
T 3m1a_A          145 FAGFSAY---SATKAALEQ  160 (281)
T ss_dssp             CTTCHHH---HHHHHHHHH
T ss_pred             CCCchHH---HHHHHHHHH
Confidence            1122456   888988764

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=99.75  E-value=2.4e-17  Score=128.03  Aligned_cols=120  Identities=20%  Similarity=0.098  Sum_probs=94.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++.+|++|.+.            .+
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   85 (271)
T 3tzq_B            9 LENKVAIITGACGGIGLETSRVLARA-GARVVLADLPETDLAGAAASV--GRGAVHHVVDLTNEVSVRALIDFTIDTFGR   85 (271)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECTTSCHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHh--CCCeEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999 899999999876655444444  3578899999998642            26


Q ss_pred             cCEEEEccCCCCC-c-----ccccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           98 VDQIYHLACPASP-I-----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~-~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      +|+||||||.... .     ...+.++..+++|+.++.++++++    ++.+. ++|++||...+.
T Consensus        86 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~  151 (271)
T 3tzq_B           86 LDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHA  151 (271)
T ss_dssp             CCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS
T ss_pred             CCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcC
Confidence            9999999997632 1     122345568999999999999888    45554 999999977553

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=99.75  E-value=8.9e-18  Score=129.42  Aligned_cols=146  Identities=16%  Similarity=0.039  Sum_probs=103.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+..........+..  ..++.++.+|+.|...            
T Consensus        12 ~~~k~vlITGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   90 (265)
T 1h5q_A           12 FVNKTIIVTGGNRGIGLAFTRAVAAA-GANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL   90 (265)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHT-TEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            46789999999999999999999999 89999999965544333333321  3578899999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc----C--CeEEEEecceecCCCCCCCCCCCCcc
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G--ARILLTSTSEVYGDPLVHPQDESYWG  165 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~i~vSS~~~~~~~~~~~~~e~~~~  165 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++++++...    +  .++|++||...+.....    +.   
T Consensus        91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----~~---  163 (265)
T 1h5q_A           91 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS----SL---  163 (265)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE----ET---
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc----cc---
Confidence            35999999999754321    22345567999999999999887532    2  48999999876543211    00   


Q ss_pred             CCCCCCcccchhhhhHHHHhhhh
Q 029640          166 NVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       166 ~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                        .+..+...|   +.||+..|.
T Consensus       164 --~~~~~~~~Y---~~sK~a~~~  181 (265)
T 1h5q_A          164 --NGSLTQVFY---NSSKAACSN  181 (265)
T ss_dssp             --TEECSCHHH---HHHHHHHHH
T ss_pred             --ccccccccc---HHHHHHHHH
Confidence              122233456   888988763

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=99.75  E-value=7.2e-18  Score=129.27  Aligned_cols=139  Identities=15%  Similarity=0.068  Sum_probs=101.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+. ...++.++.+|+.|...            .
T Consensus         9 ~~~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   87 (255)
T 1fmc_A            9 LDGKCAIITGAGAGIGKEIAITFATA-GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG   87 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            46799999999999999999999999 8999999986543332222221 13468889999998642            2


Q ss_pred             CcCEEEEccCCCCCcc---cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecCCCCCCCCCCCCccCCC
Q 029640           97 EVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~  168 (190)
                      ++|+||||||......   ..+.++..+++|+.++.++++++.    +.+. ++|++||...+...              
T Consensus        88 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------------  153 (255)
T 1fmc_A           88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKN--------------  153 (255)
T ss_dssp             SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC--------------
T ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCC--------------
Confidence            7999999999755321   223456789999999999988874    3454 89999998766421              


Q ss_pred             CCCcccchhhhhHHHHhhhh
Q 029640          169 PIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       169 ~~~~~~~y~~~~~sK~~~E~  188 (190)
                        .+...|   +.+|...|.
T Consensus       154 --~~~~~Y---~~sK~a~~~  168 (255)
T 1fmc_A          154 --INMTSY---ASSKAAASH  168 (255)
T ss_dssp             --TTCHHH---HHHHHHHHH
T ss_pred             --CCCccc---HHHHHHHHH
Confidence              112456   888988764

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=99.74  E-value=1.2e-17  Score=131.30  Aligned_cols=120  Identities=21%  Similarity=0.143  Sum_probs=93.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC--CceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH--PRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~------------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+...  .++.++++|++|.+.            
T Consensus        39 l~~k~vlVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  117 (293)
T 3rih_A           39 LSARSVLVTGGTKGIGRGIATVFARA-GANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAF  117 (293)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            47899999999999999999999999 899999999876655544444322  478999999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEeccee
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEV  150 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~  150 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++++++    ++.+ .++|++||...
T Consensus       118 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~  181 (293)
T 3rih_A          118 GALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITG  181 (293)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBT
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhh
Confidence            36999999999765322    23345668999999999999887    3444 49999999663

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=99.74  E-value=2.7e-17  Score=126.79  Aligned_cols=120  Identities=19%  Similarity=0.217  Sum_probs=93.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++.+|+.|...            .+
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLVGQ-GASAVLLDLPNSGGEAQAKKL--GNNCVFAPADVTSEKDVQTALALAKGKFGR   86 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECTTSSHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCcHhHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            46799999999999999999999999 899999999766544433333  3478999999998642            26


Q ss_pred             cCEEEEccCCCCCc----------ccccCchhHHHHHHHHHHHHHHHHHHc----------CC-eEEEEecceecC
Q 029640           98 VDQIYHLACPASPI----------FYKYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~----------~~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~-~~i~vSS~~~~~  152 (190)
                      +|+||||||.....          ...+.++..+++|+.++.++++++...          +. ++|++||...+.
T Consensus        87 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~  162 (265)
T 2o23_A           87 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE  162 (265)
T ss_dssp             CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred             CCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcC
Confidence            99999999976432          122345568999999999999888654          44 899999987664

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=99.74  E-value=1.7e-17  Score=128.76  Aligned_cols=123  Identities=18%  Similarity=0.173  Sum_probs=92.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+..........+....++.++.+|+.|...            .+
T Consensus        14 l~~k~vlITGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   92 (278)
T 2bgk_A           14 LQDKVAIITGGAGGIGETTAKLFVRY-GAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK   92 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999 899999988644332222223222378999999998642            26


Q ss_pred             cCEEEEccCCCCCc------ccccCchhHHHHHHHHHHHHHHHHHHc----CC-eEEEEecceecCC
Q 029640           98 VDQIYHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVYGD  153 (190)
Q Consensus        98 ~d~vi~~ag~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~vSS~~~~~~  153 (190)
                      +|+||||||.....      ...+.++..+++|+.++.++++++...    +. ++|++||...|..
T Consensus        93 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~  159 (278)
T 2bgk_A           93 LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTA  159 (278)
T ss_dssp             CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCC
T ss_pred             CCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCC
Confidence            99999999965421      112345568999999999999888653    44 8999999887754

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=99.74  E-value=2e-17  Score=127.63  Aligned_cols=122  Identities=16%  Similarity=0.093  Sum_probs=91.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------c-
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------L-   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~-   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|+.|.+            + 
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASL-GASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH   85 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999999 89999999865433332222221 346888999999863            1 


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++++++.    +.+. ++|++||...+.
T Consensus        86 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  151 (260)
T 2ae2_A           86 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL  151 (260)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc
Confidence            46999999999654321    223455679999999999988883    4454 999999977553

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=99.74  E-value=2.8e-17  Score=126.98  Aligned_cols=118  Identities=18%  Similarity=0.093  Sum_probs=89.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+.....+...    ++.++.+|+.|.+.            .+
T Consensus        25 l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   99 (260)
T 3gem_A           25 LSSAPILITGASQRVGLHCALRLLEH-GHRVIISYRTEHASVTELRQA----GAVALYGDFSCETGIMAFIDLLKTQTSS   99 (260)
T ss_dssp             --CCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESSCCHHHHHHHHH----TCEEEECCTTSHHHHHHHHHHHHHHCSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHhc----CCeEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            57899999999999999999999999 899999999765433333322    47889999998642            36


Q ss_pred             cCEEEEccCCCCCccc---ccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecceecC
Q 029640           98 VDQIYHLACPASPIFY---KYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~---~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~~~  152 (190)
                      +|+||||||.......   .+.++..+++|+.++.++++++..    .+ .++|++||...+.
T Consensus       100 iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~  162 (260)
T 3gem_A          100 LRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRK  162 (260)
T ss_dssp             CSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGT
T ss_pred             CCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcC
Confidence            9999999996553321   233456899999999999887743    34 3899999977553

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=99.74  E-value=2.4e-17  Score=127.13  Aligned_cols=120  Identities=21%  Similarity=0.164  Sum_probs=91.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+  ...+.++++|+.|.+.            .+
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   82 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVRE-GATVAIADIDIERARQAAAEI--GPAAYAVQMDVTRQDSIDAAIAATVEHAGG   82 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHSSS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--CCCceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            36799999999999999999999999 899999998655443333333  3468899999998642            26


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc------CCeEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV------GARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~------~~~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+.++..+++|+.++.++++++...      +.++|++||...+.
T Consensus        83 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  147 (259)
T 4e6p_A           83 LDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR  147 (259)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhcc
Confidence            999999999765322    22345567899999999998887432      23899999977553

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=99.74  E-value=4.6e-17  Score=125.76  Aligned_cols=114  Identities=19%  Similarity=0.220  Sum_probs=90.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.....        ...+.++.+|++|.+.            .+
T Consensus        26 ~~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   96 (260)
T 3un1_A           26 NQQKVVVITGASQGIGAGLVRAYRDR-NYRVVATSRSIKPSA--------DPDIHTVAGDISKPETADRIVREGIERFGR   96 (260)
T ss_dssp             TTCCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESSCCCCS--------STTEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCChhhcc--------cCceEEEEccCCCHHHHHHHHHHHHHHCCC
Confidence            46789999999999999999999999 899999999765432        2368999999998642            26


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+.++..+++|+.++.++++++    ++.+. ++|++||...+.
T Consensus        97 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~  160 (260)
T 3un1_A           97 IDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQ  160 (260)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTS
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcc
Confidence            999999999765322    22345567899999999999887    34454 899999976543

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=99.73  E-value=1.3e-17  Score=133.92  Aligned_cols=120  Identities=18%  Similarity=0.183  Sum_probs=97.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCC-----CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCC---c
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEK-----NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIE---V   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~-----~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~---~   98 (190)
                      +|+|+||||+||||+++++.|+++ +     ++|++++|+.....      ....++.++.+|+.|.+     +.+   +
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~-g~~~~~~~V~~~~r~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~   73 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLA-DTPGGPWKVYGVARRTRPAW------HEDNPINYVQCDISDPDDSQAKLSPLTDV   73 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTST-TCTTCSEEEEEEESSCCCSC------CCSSCCEEEECCTTSHHHHHHHHTTCTTC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhC-CCCCCceEEEEEeCCCCccc------cccCceEEEEeecCCHHHHHHHHhcCCCC
Confidence            478999999999999999999998 7     89999999765432      12347889999999863     234   9


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc--CC-eEE-------EEecceecCCC--CCCCCCCCC
Q 029640           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV--GA-RIL-------LTSTSEVYGDP--LVHPQDESY  163 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--~~-~~i-------~vSS~~~~~~~--~~~~~~e~~  163 (190)
                      |+|||+||...     .++...+++|+.++.+++++|++.  ++ ++|       |+||.++||..  ...+++|+.
T Consensus        74 d~vih~a~~~~-----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~  145 (364)
T 2v6g_A           74 THVFYVTWANR-----STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDL  145 (364)
T ss_dssp             CEEEECCCCCC-----SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTS
T ss_pred             CEEEECCCCCc-----chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCccc
Confidence            99999998653     356788999999999999999987  55 776       79999999874  235778874

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=99.73  E-value=2.7e-17  Score=125.38  Aligned_cols=136  Identities=18%  Similarity=0.073  Sum_probs=98.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------CCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d~v  101 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........   ..++.++.+|+.|...        .++|+|
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~id~v   80 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHAS-GAKVVAVTRTNSDLVSLAKE---CPGIEPVCVDLGDWDATEKALGGIGPVDLL   80 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---STTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHh---ccCCCcEEecCCCHHHHHHHHHHcCCCCEE
Confidence            46799999999999999999999999 89999999864332221111   1356778999998642        258999


Q ss_pred             EEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc----C--CeEEEEecceecCCCCCCCCCCCCccCCCCCC
Q 029640          102 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G--ARILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (190)
Q Consensus       102 i~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~  171 (190)
                      ||+||......    ..+.++..+++|+.++.++++++.+.    +  .++|++||...|....                
T Consensus        81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~----------------  144 (244)
T 1cyd_A           81 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFP----------------  144 (244)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCT----------------
T ss_pred             EECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCCC----------------
Confidence            99999654321    12345568999999999998877543    4  3899999987665311                


Q ss_pred             cccchhhhhHHHHhhhh
Q 029640          172 MFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       172 ~~~~y~~~~~sK~~~E~  188 (190)
                      ....|   +.||+..|.
T Consensus       145 ~~~~Y---~~sK~a~~~  158 (244)
T 1cyd_A          145 NLITY---SSTKGAMTM  158 (244)
T ss_dssp             TBHHH---HHHHHHHHH
T ss_pred             Ccchh---HHHHHHHHH
Confidence            12356   788988764

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=99.73  E-value=3.5e-17  Score=127.32  Aligned_cols=121  Identities=16%  Similarity=0.094  Sum_probs=89.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+. ...++.++.+|+.|...            .
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  110 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQA-GADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFG  110 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHH-TCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            57899999999999999999999999 8999999987654332222221 13468899999998642            2


Q ss_pred             CcCEEEEccCCCCC------cccccCchhHHHHHHHHHH----HHHHHHHHcCC-eEEEEecceec
Q 029640           97 EVDQIYHLACPASP------IFYKYNPVKTIKTNVIGTL----NMLGLAKRVGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~------~~~~~~~~~~~~~n~~~~~----~l~~~~~~~~~-~~i~vSS~~~~  151 (190)
                      ++|+|||+||....      ....+.+...+++|+.++.    .+++.+++.+. ++|++||...+
T Consensus       111 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~  176 (279)
T 3ctm_A          111 TIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGK  176 (279)
T ss_dssp             CCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTS
T ss_pred             CCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhc
Confidence            49999999996543      1122335568999999954    55666666664 99999997643

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=99.73  E-value=4.2e-17  Score=127.04  Aligned_cols=123  Identities=24%  Similarity=0.105  Sum_probs=93.6

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------   95 (190)
                      .+++++++||||+|+||+++++.|+++ |++|++++|+.+.......++.. ..++.++++|++|.+.            
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEA-GAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGEL  107 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            357899999999999999999999999 89999999976655444333322 3478899999998742            


Q ss_pred             CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~~  152 (190)
                      .++|+||||||.......    .+.++..+++|+.++.++++++..    .+  .++|++||...+.
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~  174 (276)
T 3r1i_A          108 GGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHI  174 (276)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcc
Confidence            269999999997654322    233455789999999999887743    22  4899999976543

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=99.73  E-value=3.2e-17  Score=126.08  Aligned_cols=141  Identities=18%  Similarity=0.028  Sum_probs=100.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+..........+.. ..++.++.+|+.|...            .
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEA-GARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEG   89 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999999 89999999865433222222221 3468999999998642            2


Q ss_pred             CcCEEEEccCCCC-Cc-c---cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceecCCCCCCCCCCCCccC
Q 029640           97 EVDQIYHLACPAS-PI-F---YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYGDPLVHPQDESYWGN  166 (190)
Q Consensus        97 ~~d~vi~~ag~~~-~~-~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~  166 (190)
                      ++|+||||||... .. .   ..+.+...+++|+.++.++++++.+    .+. ++|++||...+...            
T Consensus        90 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------------  157 (260)
T 3awd_A           90 RVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVN------------  157 (260)
T ss_dssp             CCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------------
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccC------------
Confidence            6999999999654 11 1   1223456799999999999888754    344 89999997654321            


Q ss_pred             CCCCCcccchhhhhHHHHhhhh
Q 029640          167 VNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       167 ~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                        +..+...|   +.+|...|.
T Consensus       158 --~~~~~~~Y---~~sK~a~~~  174 (260)
T 3awd_A          158 --RPQQQAAY---NASKAGVHQ  174 (260)
T ss_dssp             --SSSCCHHH---HHHHHHHHH
T ss_pred             --CCCCcccc---HHHHHHHHH
Confidence              11112456   888988764

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=99.73  E-value=3.3e-17  Score=126.22  Aligned_cols=121  Identities=18%  Similarity=0.125  Sum_probs=93.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+. ...++.++.+|+.|.+.            .
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   88 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKA-GASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFG   88 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999 8999999986554433333332 23578999999998642            3


Q ss_pred             CcCEEEEccCCCCCcc---cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029640           97 EVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                      ++|+||||||......   ..+.++..+++|+.++.++++++.    +.+. ++|++||...+
T Consensus        89 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~  151 (256)
T 3gaf_A           89 KITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGE  151 (256)
T ss_dssp             CCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGT
T ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHc
Confidence            6999999999765422   233456689999999999998873    3444 99999997754

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.73  E-value=3.1e-17  Score=126.77  Aligned_cols=120  Identities=18%  Similarity=0.122  Sum_probs=92.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~------------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+..  ..++.++++|++|.+.            
T Consensus         8 l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (262)
T 3pk0_A            8 LQGRSVVVTGGTKGIGRGIATVFARA-GANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF   86 (262)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999 89999999976544433333322  2478999999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc----C-CeEEEEeccee
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G-ARILLTSTSEV  150 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~i~vSS~~~  150 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++++++.+.    + .++|++||...
T Consensus        87 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~  150 (262)
T 3pk0_A           87 GGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITG  150 (262)
T ss_dssp             SCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBT
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhh
Confidence            26999999999764321    22345567999999999998887543    4 49999999653

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.73  E-value=5.8e-18  Score=132.14  Aligned_cols=150  Identities=17%  Similarity=0.073  Sum_probs=104.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC--------hhhhhh----h-hcCCceEEEecccccccc-
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--------KDNLRK----W-IGHPRFELIRHDVTEPLL-   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~--------~~~~~~----~-~~~~~~~~~~~D~~~~~~-   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+....        ...+..    + ....++.++.+|+.|... 
T Consensus         8 l~gk~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   86 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGRSHAVKLAEE-GADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAV   86 (287)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHC-CCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence            47899999999999999999999999 89999998863211        111111    1 123578999999998642 


Q ss_pred             -----------CCcCEEEEccCCCCCc--ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecCCCCCCCC
Q 029640           96 -----------IEVDQIYHLACPASPI--FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGDPLVHPQ  159 (190)
Q Consensus        96 -----------~~~d~vi~~ag~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~~~~~~~~  159 (190)
                                 .++|+||||||.....  ...+.++..+++|+.++.++++++...   +.++|++||...+......+.
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~  166 (287)
T 3pxx_A           87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQPPG  166 (287)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCCC-
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccccccc
Confidence                       2699999999976543  223456678999999999999999764   238999999876653322222


Q ss_pred             CCCCccCCCCCCcccchhhhhHHHHhhhh
Q 029640          160 DESYWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       160 ~e~~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      .|.     .+..   .+..|+.||...+.
T Consensus       167 ~~~-----~~~~---~~~~Y~asK~a~~~  187 (287)
T 3pxx_A          167 AGG-----PQGP---GGAGYSYAKQLVDS  187 (287)
T ss_dssp             ---------CHH---HHHHHHHHHHHHHH
T ss_pred             ccc-----cCCC---ccchHHHHHHHHHH
Confidence            222     2222   23344888987763

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=99.73  E-value=3.5e-17  Score=126.35  Aligned_cols=122  Identities=14%  Similarity=0.055  Sum_probs=91.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+..  ..++.++.+|+.|.+.            
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKE-GAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46799999999999999999999999 89999999865433322222211  3468899999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++++++.    +.+. ++|++||...+.
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  149 (263)
T 3ai3_A           84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQ  149 (263)
T ss_dssp             SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcC
Confidence            26999999999654321    223455679999999999988774    3454 899999987765

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=99.73  E-value=5.5e-17  Score=124.21  Aligned_cols=120  Identities=17%  Similarity=0.073  Sum_probs=87.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------CCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d~v  101 (190)
                      ..+++++||||+|+||+++++.|+++ |++|++++|+.+........+  ...+.++.+|+.+...        .++|+|
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~l   88 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKL-GSKVIISGSNEEKLKSLGNAL--KDNYTIEVCNLANKEECSNLISKTSNLDIL   88 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH--CSSEEEEECCTTSHHHHHHHHHTCSCCSEE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHh--ccCccEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence            37799999999999999999999999 899999998654433322222  2478889999998632        369999


Q ss_pred             EEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640          102 YHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus       102 i~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      |||||.....    ...+.++..+++|+.++.++++++.    +.+. ++|++||...+.
T Consensus        89 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  148 (249)
T 3f9i_A           89 VCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIA  148 (249)
T ss_dssp             EECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--
T ss_pred             EECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhcc
Confidence            9999966532    2345677889999999999988773    3344 899999977654

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=99.72  E-value=4.3e-17  Score=124.42  Aligned_cols=119  Identities=13%  Similarity=0.087  Sum_probs=82.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhh-cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++ .|+..........+. ...++.++.+|+.|.+.            
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~-G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNM-GANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAF   81 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            36789999999999999999999999 8899988 554332222222221 13468899999998642            


Q ss_pred             CCcCEEEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecce
Q 029640           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~  149 (190)
                      .++|+||||||.....    ...+.++..+++|+.++.++++++.+    .+. ++|++||..
T Consensus        82 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~  144 (247)
T 2hq1_A           82 GRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIA  144 (247)
T ss_dssp             SCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC--
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChh
Confidence            2699999999965432    13345678899999999888877753    454 899999975

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=99.72  E-value=2.8e-17  Score=126.57  Aligned_cols=120  Identities=21%  Similarity=0.202  Sum_probs=88.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++.+|++|.+.            .+
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (257)
T 3tpc_A            5 LKSRVFIVTGASSGLGAAVTRMLAQE-GATVLGLDLKPPAGEEPAAEL--GAAVRFRNADVTNEADATAALAFAKQEFGH   81 (257)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESSCC--------------CEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999 899999999876655444333  3468899999998642            26


Q ss_pred             cCEEEEccCCCCCcc--------cccCchhHHHHHHHHHHHHHHHHHHc----------CC-eEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~-~~i~vSS~~~~~  152 (190)
                      +|+||||||......        ..+.++..+++|+.++.++++++...          +. ++|++||...+.
T Consensus        82 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~  155 (257)
T 3tpc_A           82 VHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFD  155 (257)
T ss_dssp             CCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred             CCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcc
Confidence            999999999764321        12345667999999999999888643          23 799999987654

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=99.72  E-value=2.5e-17  Score=127.21  Aligned_cols=122  Identities=18%  Similarity=0.101  Sum_probs=85.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc-------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~-------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+..........+.. ...+.++.+|+.+...             
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   90 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGF-GAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFG   90 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            46799999999999999999999999 89999999865433332222221 3468889999998631             


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++++++    ++.+. ++|++||...+.
T Consensus        91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~  156 (266)
T 1xq1_A           91 GKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVV  156 (266)
T ss_dssp             TCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC------
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcc
Confidence            46899999999654321    22345567999999999999888    34454 999999977654

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=99.72  E-value=3.9e-17  Score=127.12  Aligned_cols=122  Identities=17%  Similarity=0.079  Sum_probs=89.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc---CCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~-----------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.|+..........+..   ...+.++.+|+.|.+.           
T Consensus        30 l~~k~vlVTGasggIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           30 WRDRLALVTGASGGIGAAVARALVQQ-GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ  108 (279)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            47899999999999999999999999 89999999865433322222211   2467889999998742           


Q ss_pred             -CCcCEEEEccCCCCCcc----cccCchhHHHHHHHH----HHHHHHHHHHcC---CeEEEEecceecC
Q 029640           96 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIG----TLNMLGLAKRVG---ARILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~----~~~l~~~~~~~~---~~~i~vSS~~~~~  152 (190)
                       .++|+||||||......    ..+.++..+++|+.+    +..+++.+++.+   .++|++||...+.
T Consensus       109 ~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~  177 (279)
T 1xg5_A          109 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHR  177 (279)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTS
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcc
Confidence             26999999999654321    223455679999999    555566666665   4899999987654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=99.72  E-value=4.8e-17  Score=126.56  Aligned_cols=122  Identities=20%  Similarity=0.104  Sum_probs=92.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC--------Chhhhhh----h-hcCCceEEEecccccccc-
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG--------SKDNLRK----W-IGHPRFELIRHDVTEPLL-   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~--------~~~~~~~----~-~~~~~~~~~~~D~~~~~~-   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+...        ..+.+..    + ....++.++++|++|++. 
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   89 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAAD-GADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL   89 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence            47899999999999999999999999 8999999886321        1111111    1 113578999999998642 


Q ss_pred             -----------CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceecC
Q 029640           96 -----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYG  152 (190)
Q Consensus        96 -----------~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~~  152 (190)
                                 .++|+||||||........+.++..+++|+.++.++++++..    .+  .+||++||...+.
T Consensus        90 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~  163 (278)
T 3sx2_A           90 SAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLA  163 (278)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcC
Confidence                       269999999997654434456778899999999999888743    22  3899999977554

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=99.72  E-value=7.4e-17  Score=123.69  Aligned_cols=120  Identities=21%  Similarity=0.178  Sum_probs=90.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC-CCChhhhhhhhcCCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+. +.....+...  ..++.++.+|+.|.+.            .
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (249)
T 2ew8_A            5 LKDKLAVITGGANGIGRAIAERFAVE-GADIAIADLVPAPEAEAAIRNL--GRRVLTVKCDVSQPGDVEAFGKQVISTFG   81 (249)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCHHHHHHHHHT--TCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEcCCchhHHHHHHHhc--CCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            46789999999999999999999999 89999999875 3222222211  3468899999998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      ++|+||||||......    ..+.++..+++|+.++.++++++    ++.+. ++|++||...+.
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  146 (249)
T 2ew8_A           82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL  146 (249)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc
Confidence            6999999999754321    22345567999999998888774    44554 999999987664

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=99.72  E-value=7.1e-17  Score=123.71  Aligned_cols=139  Identities=16%  Similarity=-0.015  Sum_probs=98.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCce-EEEecccccccc-----------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRF-ELIRHDVTEPLL-----------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~D~~~~~~-----------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+  ...+ .++.+|+.|...           .+
T Consensus         9 ~~~k~vlITGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (254)
T 2wsb_A            9 LDGACAAVTGAGSGIGLEICRAFAAS-GARLILIDREAAALDRAAQEL--GAAVAARIVADVTDAEAMTAAAAEAEAVAP   85 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH--GGGEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--cccceeEEEEecCCHHHHHHHHHHHHhhCC
Confidence            46789999999999999999999999 899999998654333222222  2245 888999998642           36


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecCCCCCCCCCCCCccCCC
Q 029640           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVN  168 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~  168 (190)
                      +|+||||||.......    .+..+..+++|+.++.++++.+    ++.+. ++|++||...+...              
T Consensus        86 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~--------------  151 (254)
T 2wsb_A           86 VSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVN--------------  151 (254)
T ss_dssp             CCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------------
T ss_pred             CcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCC--------------
Confidence            9999999997653221    2234567899999988777765    34454 99999998765431              


Q ss_pred             CCCcccchhhhhHHHHhhhh
Q 029640          169 PIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       169 ~~~~~~~y~~~~~sK~~~E~  188 (190)
                      +..+...|   +.||+..|.
T Consensus       152 ~~~~~~~Y---~~sK~a~~~  168 (254)
T 2wsb_A          152 RPQFASSY---MASKGAVHQ  168 (254)
T ss_dssp             SSSCBHHH---HHHHHHHHH
T ss_pred             CCCcchHH---HHHHHHHHH
Confidence            11122456   788988764

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=99.72  E-value=4.6e-17  Score=126.40  Aligned_cols=122  Identities=15%  Similarity=0.065  Sum_probs=90.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+..........+.. ..++.++.+|+.|.+.            .
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  107 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG  107 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            47799999999999999999999999 89999999865433322222221 3478999999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      ++|+||||||......    ..+.....+++|+.++.++++.+.    +.+. ++|++||...+.
T Consensus       108 ~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~  172 (272)
T 1yb1_A          108 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV  172 (272)
T ss_dssp             CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC
T ss_pred             CCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcC
Confidence            6999999999765321    123355689999999888777663    3454 899999977654

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=99.72  E-value=6.9e-17  Score=126.13  Aligned_cols=122  Identities=15%  Similarity=0.055  Sum_probs=91.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhhc--CCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG--HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~~--~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.... ......+..  ...+.++.+|+.|.+.           
T Consensus        23 l~~k~~lVTGas~GIG~~ia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  101 (281)
T 3v2h_A           23 MMTKTAVITGSTSGIGLAIARTLAKA-GANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADR  101 (281)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999 89999998843322 222222221  3578999999998642           


Q ss_pred             -CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           96 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                       .++|+||||||......    ..+.++..+++|+.++.++++++    ++.+. ++|++||...+.
T Consensus       102 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  168 (281)
T 3v2h_A          102 FGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLV  168 (281)
T ss_dssp             TSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCccccc
Confidence             36999999999765432    22345567999999999999887    34444 899999977553

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=99.72  E-value=2.4e-17  Score=125.51  Aligned_cols=120  Identities=16%  Similarity=0.060  Sum_probs=89.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      |++++++||||+|+||+++++.|+++ |++|++++|+.+........+.  .++.++.+|++|.+.            .+
T Consensus         1 Ms~k~vlVTGas~GIG~a~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   77 (235)
T 3l6e_A            1 MSLGHIIVTGAGSGLGRALTIGLVER-GHQVSMMGRRYQRLQQQELLLG--NAVIGIVADLAHHEDVDVAFAAAVEWGGL   77 (235)
T ss_dssp             --CCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHG--GGEEEEECCTTSHHHHHHHHHHHHHHHCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhc--CCceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            35789999999999999999999999 8999999997554433333332  268999999998642            26


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc----CCeEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+.++..+++|+.++.++++++...    +.++|++||...+.
T Consensus        78 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~  140 (235)
T 3l6e_A           78 PELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV  140 (235)
T ss_dssp             CSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCS
T ss_pred             CcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcC
Confidence            999999999754321    23445678999999999998887432    23899999976543

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.72  E-value=4.6e-17  Score=126.19  Aligned_cols=119  Identities=18%  Similarity=0.099  Sum_probs=88.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh--hcCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~------------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.|+.+........+  ....++.++.+|+.+.+.            
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   97 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEA-GCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF   97 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            47899999999999999999999999 899999998654333222222  113468889999998642            


Q ss_pred             CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecce
Q 029640           96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~  149 (190)
                      .++|+||||||.......    .+.++..+++|+.++.++++++.    +.+. ++|++||..
T Consensus        98 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~  160 (267)
T 1vl8_A           98 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLT  160 (267)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGG
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence            269999999997643211    22345678999999999988773    3343 899999965

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=99.72  E-value=6.4e-17  Score=126.17  Aligned_cols=122  Identities=15%  Similarity=0.017  Sum_probs=90.8

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------   95 (190)
                      ++++++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ...+.++.+|++|.+.            
T Consensus        21 m~~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           21 MSRPQTAFVTGVSSGIGLAVARTLAAR-GIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERF   99 (279)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            457899999999999999999999999 89999999975544433333322 3578999999998642            


Q ss_pred             CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH------cCC-eEEEEecceec
Q 029640           96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR------VGA-RILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~------~~~-~~i~vSS~~~~  151 (190)
                      .++|+||||||.......    .+.++..+++|+.++.++++++..      .+. ++|++||...+
T Consensus       100 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~  166 (279)
T 3sju_A          100 GPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGK  166 (279)
T ss_dssp             CSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGT
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhc
Confidence            269999999997653221    233456789999999999988754      344 89999997754

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=99.72  E-value=4.8e-17  Score=126.88  Aligned_cols=122  Identities=20%  Similarity=0.170  Sum_probs=92.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC----CceEEEecccccccc----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLL----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~----------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+...    ..+.++.+|++|...          
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAA-GASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA   87 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999999 899999998755444333333221    278899999998642          


Q ss_pred             --CCcCEEEEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceecC
Q 029640           96 --IEVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 --~~~d~vi~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~~  152 (190)
                        .++|+||||||.....  .   ..+.++..+++|+.++.++++++.+    .+. ++|++||...+.
T Consensus        88 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  156 (281)
T 3svt_A           88 WHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASN  156 (281)
T ss_dssp             HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS
T ss_pred             HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcC
Confidence              3699999999963321  1   2233556899999999999887753    233 899999987664

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=99.72  E-value=6.7e-17  Score=125.73  Aligned_cols=121  Identities=15%  Similarity=0.063  Sum_probs=91.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc-----------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL-----------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~-----------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|.. ........+. ...++.++.+|+.|.+.           .+
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~  106 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARA-GAHVLAWGRTD-GVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRR  106 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESST-HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEcCHH-HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCC
Confidence            57899999999999999999999999 88999998642 2222222222 23578899999998642           36


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+.++..+++|+.++.++++++.    +.+. ++|++||...+.
T Consensus       107 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~  170 (273)
T 3uf0_A          107 VDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQ  170 (273)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred             CcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcC
Confidence            999999999765422    223455689999999999988773    3454 899999977553

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=99.72  E-value=3.5e-17  Score=125.29  Aligned_cols=122  Identities=19%  Similarity=0.067  Sum_probs=90.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh-hhhhh-cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-~~~~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.....+. ...+. ...++.++++|++|...            
T Consensus         2 l~~k~~lVTGas~gIG~~ia~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            2 KMTKSALVTGASRGIGRSIALQLAEE-GYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF   80 (246)
T ss_dssp             CCSCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46789999999999999999999999 89998887754322222 22221 23578899999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++++++    ++.+. ++|++||...+.
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  146 (246)
T 3osu_A           81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAV  146 (246)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC
Confidence            26999999999765322    23345568999999999999988    44454 899999977553

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=99.72  E-value=1e-16  Score=123.21  Aligned_cols=121  Identities=11%  Similarity=0.008  Sum_probs=93.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc-----------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-----------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~-----------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|++|.+.           .+
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~   83 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAE-GFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAP   83 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHT-TCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCC
Confidence            46799999999999999999999999 89999999976665544444322 3578999999998642           26


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      +|+||||||......    ..+.++..+++|+.++.++++++    ++.+. ++|++||...+
T Consensus        84 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~  146 (252)
T 3h7a_A           84 LEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASL  146 (252)
T ss_dssp             EEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGT
T ss_pred             ceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHc
Confidence            899999999765321    22345567999999999988876    33444 99999997654

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=99.72  E-value=5e-17  Score=125.37  Aligned_cols=122  Identities=11%  Similarity=0.013  Sum_probs=91.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC-Chhhhhhhhc--CCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIG--HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~-~~~~~~~~~~--~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+. .......+..  ..++.++.+|+.|.+.           
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQ-GADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHc-CCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            46799999999999999999999999 8999999986543 2222222211  3468889999998642           


Q ss_pred             -CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           96 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                       .++|+||||||......    ..+.++..+++|+.++.++++++.    +.+. ++|++||...+.
T Consensus        81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  147 (260)
T 1x1t_A           81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV  147 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCc
Confidence             26999999999654321    223455689999999999888774    3444 999999987654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=99.72  E-value=5.2e-17  Score=126.96  Aligned_cols=121  Identities=21%  Similarity=0.171  Sum_probs=91.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++++|+.|.+.            .
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAAD-GVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFG  104 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            36789999999999999999999999 89999999875544333333322 3578899999998642            3


Q ss_pred             CcCEEEEccCCCCC--c---ccccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           97 EVDQIYHLACPASP--I---FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~--~---~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      ++|+||||||....  .   ...+.++..+++|+.++.++++++    ++.+. ++|++||...+
T Consensus       105 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~  169 (283)
T 3v8b_A          105 HLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGT  169 (283)
T ss_dssp             CCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTT
T ss_pred             CCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhc
Confidence            69999999997532  1   122345568999999999999887    44454 99999996643

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=99.72  E-value=4.7e-17  Score=125.19  Aligned_cols=120  Identities=19%  Similarity=0.158  Sum_probs=88.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++.+|+.+.+.            .+
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAA-GARVVLADVLDEEGAATAREL--GDAARYQHLDVTIEEDWQRVVAYAREEFGS   79 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--CCceeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999 899999998654332222222  2368889999998642            26


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHH----HHHcCC-eEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~----~~~~~~-~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+.++..+++|+.++.++.+.    +++.+. ++|++||...+.
T Consensus        80 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  143 (254)
T 1hdc_A           80 VDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM  143 (254)
T ss_dssp             CCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc
Confidence            999999999654321    2234556799999999865544    455554 999999987654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=99.71  E-value=1.7e-16  Score=123.55  Aligned_cols=122  Identities=17%  Similarity=0.090  Sum_probs=95.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc-----------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL-----------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~-----------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+. ....+.++.+|+.|...           .+
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~  109 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGA-GAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAP  109 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            57899999999999999999999999 8999999998776665544442 24578999999998742           26


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+.++..+++|+.++.++++++.    +.+. ++|++||...+.
T Consensus       110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~  173 (275)
T 4imr_A          110 VDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR  173 (275)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC
Confidence            999999999654322    223455679999999999988873    3444 999999976554

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=99.71  E-value=1.4e-16  Score=124.38  Aligned_cols=121  Identities=17%  Similarity=0.031  Sum_probs=91.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh-hhhhh-cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-~~~~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+....... ...+. ...++.++.+|+.+.+.            
T Consensus        27 ~~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~  105 (283)
T 1g0o_A           27 LEGKVALVTGAGRGIGREMAMELGRR-GCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF  105 (283)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999 89999998865322111 12221 13468889999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc--C-CeEEEEecceec
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~-~~~i~vSS~~~~  151 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++++++.+.  + .++|++||...+
T Consensus       106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~  168 (283)
T 1g0o_A          106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQ  168 (283)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGT
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhc
Confidence            36999999999764321    22345667999999999999999775  4 499999997644

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=99.71  E-value=4.8e-17  Score=125.49  Aligned_cols=121  Identities=17%  Similarity=0.101  Sum_probs=89.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhhc-CCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------   95 (190)
                      .++++++||||+|+||+++++.|+++ |++|++. .|+.+........+.. ..++.++.+|++|.+.            
T Consensus         2 ~~~k~vlVTGas~gIG~aia~~l~~~-G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (258)
T 3oid_A            2 EQNKCALVTGSSRGVGKAAAIRLAEN-GYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETF   80 (258)
T ss_dssp             -CCCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            36789999999999999999999999 8888886 6654333332222221 3478999999998742            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++++++.    +.+. +||++||...+
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~  145 (258)
T 3oid_A           81 GRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSI  145 (258)
T ss_dssp             SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGT
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhC
Confidence            36899999999654322    123345679999999999988873    3344 89999997654

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=99.71  E-value=6e-17  Score=124.86  Aligned_cols=122  Identities=19%  Similarity=0.099  Sum_probs=91.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|+.|.+.            .
T Consensus        12 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   90 (260)
T 2zat_A           12 LENKVALVTASTDGIGLAIARRLAQD-GAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHG   90 (260)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999999 89999999865433322222221 3468889999998642            2


Q ss_pred             CcCEEEEccCCCCC--c---ccccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           97 EVDQIYHLACPASP--I---FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~--~---~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      ++|+||||||....  .   ...+.++..+++|+.++.++++++.    +.+. ++|++||...|.
T Consensus        91 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  156 (260)
T 2zat_A           91 GVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYH  156 (260)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcC
Confidence            69999999996431  1   1223355689999999999888764    4454 899999987664

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=99.71  E-value=3.8e-17  Score=126.54  Aligned_cols=122  Identities=15%  Similarity=0.115  Sum_probs=93.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+.  ...++.++++|++|.+.            
T Consensus        18 l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   96 (266)
T 4egf_A           18 LDGKRALITGATKGIGADIARAFAAA-GARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAF   96 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            47899999999999999999999999 8999999996554443333332  24578999999999753            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~~  152 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++++++..    .+  .++|++||...+.
T Consensus        97 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~  163 (266)
T 4egf_A           97 GGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA  163 (266)
T ss_dssp             TSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc
Confidence            26999999999765422    1233556799999999999887743    23  3899999977653

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=99.71  E-value=3.8e-17  Score=126.14  Aligned_cols=120  Identities=18%  Similarity=0.215  Sum_probs=89.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccccc------------C
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~------------~   96 (190)
                      ++++++||||+|+||+++++.|+++ |++|+++.|+.......+.....  ..++.++.+|++|.+.            .
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   84 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAK-GYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFG   84 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHC-CCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            5689999999999999999999999 89999987765433333333221  2478999999998642            2


Q ss_pred             CcCEEEEccCCC--CCc----ccccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           97 EVDQIYHLACPA--SPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~--~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      ++|+||||||..  ...    ...+.++..+++|+.++.++++++    ++.+. ++|++||...+
T Consensus        85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~  150 (264)
T 3i4f_A           85 KIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGAD  150 (264)
T ss_dssp             CCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGG
T ss_pred             CCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhc
Confidence            699999999942  211    122345567999999999999887    45554 89999987544

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=99.71  E-value=2.8e-17  Score=127.21  Aligned_cols=121  Identities=17%  Similarity=0.074  Sum_probs=90.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC-CCChhhhhhhh-cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~-~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+. +........+. ...++.++.+|+.|...            
T Consensus        19 ~~~k~vlItGasggiG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   97 (274)
T 1ja9_A           19 LAGKVALTTGAGRGIGRGIAIELGRR-GASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF   97 (274)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            46799999999999999999999999 89999988832 22222222221 13468899999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceec
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~  151 (190)
                      .++|+|||+||......    ..+.++..+++|+.++.++++++.+.   +.++|++||...+
T Consensus        98 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~  160 (274)
T 1ja9_A           98 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAV  160 (274)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGT
T ss_pred             CCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhc
Confidence            26999999999654321    22334568999999999999988664   3589999998776

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=99.71  E-value=8.9e-17  Score=122.53  Aligned_cols=136  Identities=20%  Similarity=0.119  Sum_probs=97.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------CCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d~v  101 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........   ..++.++.+|+.|.+.        .++|+|
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~id~v   80 (244)
T 3d3w_A            5 LAGRRVLVTGAGKGIGRGTVQALHAT-GARVVAVSRTQADLDSLVRE---CPGIEPVCVDLGDWEATERALGSVGPVDLL   80 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---STTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHH---cCCCCEEEEeCCCHHHHHHHHHHcCCCCEE
Confidence            46789999999999999999999999 89999998864332222111   1246777999998642        358999


Q ss_pred             EEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceecCCCCCCCCCCCCccCCCCCC
Q 029640          102 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (190)
Q Consensus       102 i~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~  171 (190)
                      ||+||......    ..+.++..+++|+.++.++++++.+    .+  .++|++||...+...                .
T Consensus        81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------------~  144 (244)
T 3d3w_A           81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV----------------T  144 (244)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC----------------T
T ss_pred             EECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCC----------------C
Confidence            99999654321    1233556899999999998887754    34  389999997755421                1


Q ss_pred             cccchhhhhHHHHhhhh
Q 029640          172 MFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       172 ~~~~y~~~~~sK~~~E~  188 (190)
                      ....|   +.||+..|.
T Consensus       145 ~~~~Y---~~sK~a~~~  158 (244)
T 3d3w_A          145 NHSVY---CSTKGALDM  158 (244)
T ss_dssp             TBHHH---HHHHHHHHH
T ss_pred             CCchH---HHHHHHHHH
Confidence            12456   888988764

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=99.71  E-value=5.9e-17  Score=124.73  Aligned_cols=121  Identities=17%  Similarity=0.091  Sum_probs=88.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC-CCCCChhhhhhhh-cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN-YFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r-~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.| +.+........+. ...++.++.+|+.+...            
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (261)
T 1gee_A            5 LEGKVVVITGSSTGLGKSMAIRFATE-KAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            46799999999999999999999999 899999988 4322222222221 13468889999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceec
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~  151 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++++++.+    .+  .++|++||...+
T Consensus        84 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~  149 (261)
T 1gee_A           84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEK  149 (261)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhc
Confidence            26999999999764321    2234556899999999988877643    33  499999996644

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=99.71  E-value=6.5e-17  Score=125.66  Aligned_cols=121  Identities=17%  Similarity=0.121  Sum_probs=92.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+.......++.. ..++.++.+|+.|.+.            .
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  102 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVA-GARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGI  102 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence            57899999999999999999999999 89999999865544433333322 3578999999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceec
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~  151 (190)
                      ++|+||||||......    ..+.++..+++|+.++.++.+++..    .+. ++|++||...+
T Consensus       103 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~  166 (271)
T 4ibo_A          103 DVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSE  166 (271)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             CCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhC
Confidence            6999999999764322    2334556799999999999777643    344 89999996643

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=99.71  E-value=1.8e-16  Score=126.23  Aligned_cols=122  Identities=18%  Similarity=0.121  Sum_probs=90.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC-CChhhhhhhh-----cCCceEEEecccccccc--------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT-GSKDNLRKWI-----GHPRFELIRHDVTEPLL--------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~-~~~~~~~~~~-----~~~~~~~~~~D~~~~~~--------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++..|+.. .....+..+.     ....+.++.+|++|...        
T Consensus         3 m~~k~vlVTGas~GIG~aia~~L~~~-G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~   81 (324)
T 3u9l_A            3 MSKKIILITGASSGFGRLTAEALAGA-GHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQI   81 (324)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence            35689999999999999999999999 899999888632 2222222221     13578999999998642        


Q ss_pred             ----CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           96 ----IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ----~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                          .++|+||||||......    ..+.....+++|+.++.++++++    ++.+. ++|++||...+.
T Consensus        82 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~  151 (324)
T 3u9l_A           82 IGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAG  151 (324)
T ss_dssp             HHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred             HHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhcc
Confidence                26999999999654322    22334567899999999999988    45554 899999987653

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=99.71  E-value=6.9e-17  Score=125.19  Aligned_cols=119  Identities=13%  Similarity=0.032  Sum_probs=87.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |+.|.+++|+.+........+  ..++.++.+|++|.+.            .+
T Consensus        25 l~gk~vlVTGas~gIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (266)
T 3grp_A           25 LTGRKALVTGATGGIGEAIARCFHAQ-GAIVGLHGTREDKLKEIAADL--GKDVFVFSANLSDRKSIKQLAEVAEREMEG  101 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH--CSSEEEEECCTTSHHHHHHHHHHHHHHHTS
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--CCceEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999 899999988654433332222  3478999999998642            36


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      +|+||||||......    ..+.++..+++|+.++.++.+++    .+.+. ++|++||...+
T Consensus       102 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~  164 (266)
T 3grp_A          102 IDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGV  164 (266)
T ss_dssp             CCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC---
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHc
Confidence            999999999765321    23345678999999987777665    33444 99999997654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=99.71  E-value=1e-16  Score=124.58  Aligned_cols=122  Identities=16%  Similarity=0.101  Sum_probs=92.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------c-
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------L-   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~-   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|+.|.+            + 
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   97 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGL-GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD   97 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999 89999999865433332222221 346888999999863            2 


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++++++.    +.+. ++|++||...+.
T Consensus        98 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~  163 (273)
T 1ae1_A           98 GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS  163 (273)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcC
Confidence            46999999999754321    223455678999999999988873    3444 999999987765

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=99.71  E-value=9.5e-17  Score=123.93  Aligned_cols=120  Identities=18%  Similarity=0.127  Sum_probs=88.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+.  ..+.++.+|+.|.+.            .+
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   81 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAE-GAKVVFGDILDEEGKAMAAELA--DAARYVHLDVTQPAQWKAAVDTAVTAFGG   81 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTG--GGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhh--cCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999 8999999986543332222221  247889999998642            26


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+.++..+++|+.++.++.+.+    ++.+. ++|++||...+.
T Consensus        82 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  145 (260)
T 1nff_A           82 LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLA  145 (260)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcC
Confidence            999999999654321    22345568999999997766654    44454 999999987654

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=99.71  E-value=1e-16  Score=122.14  Aligned_cols=120  Identities=13%  Similarity=0.046  Sum_probs=89.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCC-------eEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc--------
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKN-------EVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL--------   95 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~-------~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~--------   95 (190)
                      +++++||||+|+||+++++.|+++ |+       .|+++.|+..........+.. ..++.++.+|+.+...        
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~-G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARA-ARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHH-TTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHh-cCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHH
Confidence            578999999999999999999999 77       899998864333222222221 3468899999998642        


Q ss_pred             ----CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceecC
Q 029640           96 ----IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ----~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~~  152 (190)
                          .++|+||||||......    ..+.++..+++|+.++.++++.+..    .+. ++|++||...+.
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~  150 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK  150 (244)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred             HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcC
Confidence                26999999999754321    2234566799999999999888743    344 999999987664

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=99.71  E-value=1.6e-16  Score=123.78  Aligned_cols=122  Identities=19%  Similarity=0.086  Sum_probs=92.1

Q ss_pred             cccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------
Q 029640           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        28 ~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------   95 (190)
                      ..+++++++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++++|++|.+.            
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKN-GAYVVVADVNEDAAVRVANEI--GSKAFGVRVDVSSAKDAESMVEKTTAKW   99 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            3357899999999999999999999999 899999998654333332222  3478899999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++++++.    +.+. ++|++||...+.
T Consensus       100 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  165 (277)
T 4dqx_A          100 GRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATS  165 (277)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTS
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCc
Confidence            26999999999655322    223455678999999999888774    3334 899999977553

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=99.71  E-value=1.9e-16  Score=122.58  Aligned_cols=112  Identities=19%  Similarity=0.151  Sum_probs=88.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+.          ..++.++.+|+.|.+.            .+
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~----------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   74 (264)
T 2dtx_A            6 LRDKVVIVTGASMGIGRAIAERFVDE-GSKVIDLSIHDPG----------EAKYDHIECDVTNPDQVKASIDHIFKEYGS   74 (264)
T ss_dssp             GTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESSCCC----------SCSSEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEecCccc----------CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999 8999999986543          2367889999998642            26


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+.++..+++|+.++.++++++..    .+ .++|++||...+.
T Consensus        75 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  138 (264)
T 2dtx_A           75 ISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASI  138 (264)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTS
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhcc
Confidence            999999999654321    2234567899999999999888754    33 4999999977654

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=99.71  E-value=9e-17  Score=125.26  Aligned_cols=119  Identities=18%  Similarity=0.063  Sum_probs=92.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++++|++|.+.            .+
T Consensus        27 l~gk~vlVTGas~gIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  103 (277)
T 3gvc_A           27 LAGKVAIVTGAGAGIGLAVARRLADE-GCHVLCADIDGDAADAAATKI--GCGAAACRVDVSDEQQIIAMVDACVAAFGG  103 (277)
T ss_dssp             CTTCEEEETTTTSTHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHH--CSSCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc--CCcceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999 899999998655443333333  3578899999998742            26


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~  151 (190)
                      +|+||||||......    ..+.++..+++|+.++.++++++..    .+. ++|++||...+
T Consensus       104 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~  166 (277)
T 3gvc_A          104 VDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQ  166 (277)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGT
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhc
Confidence            999999999765321    2334566899999999999888743    344 89999997654

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.71  E-value=5.4e-17  Score=126.21  Aligned_cols=120  Identities=14%  Similarity=0.046  Sum_probs=87.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh---h-cCCceEEEecccccccc----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---I-GHPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~~~D~~~~~~----------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+   . ...++.++.+|+.|.+.          
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFARE-GAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   82 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHH
Confidence            36789999999999999999999999 899999998654333222222   1 12368899999998642          


Q ss_pred             --CCcCEEEEccCCCCCcc--------cccCchhHHHHHHHHHHHHHHHHHHc----CCeEEEEeccee
Q 029640           96 --IEVDQIYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEV  150 (190)
Q Consensus        96 --~~~d~vi~~ag~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~vSS~~~  150 (190)
                        .++|+||||||......        ..+.++..+++|+.++.++++++.+.    +.++|++||...
T Consensus        83 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~  151 (278)
T 1spx_A           83 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIAS  151 (278)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTS
T ss_pred             HcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEecccc
Confidence              26999999999654321        22345567999999999998887543    469999999765

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=99.71  E-value=1.6e-16  Score=121.95  Aligned_cols=118  Identities=18%  Similarity=0.160  Sum_probs=89.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCe-EEEEcCCCCC-ChhhhhhhhcCCceEEEecccccc-cc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNE-VIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEP-LL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~-v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~~~-~~-----------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++ |++++|+... ....+.......++.++.+|+.|. +.           
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~-G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKR-NLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-CCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHC-CCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHh
Confidence            46799999999999999999999999 775 8888886531 111222222234788999999986 31           


Q ss_pred             -CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc--------CCeEEEEecceecC
Q 029640           96 -IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV--------GARILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~--------~~~~i~vSS~~~~~  152 (190)
                       .++|+||||||...    .+.++..+++|+.++.++++++...        +.++|++||...+.
T Consensus        82 ~g~id~lv~~Ag~~~----~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~  143 (254)
T 1sby_A           82 LKTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN  143 (254)
T ss_dssp             HSCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS
T ss_pred             cCCCCEEEECCccCC----HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhcc
Confidence             26999999999643    3567789999999999999888532        23799999987664

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=99.70  E-value=8.7e-17  Score=122.94  Aligned_cols=120  Identities=16%  Similarity=0.047  Sum_probs=88.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh-h-cCCceEEEecccccccc------------CC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW-I-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~-~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++||||+|+||+++++.|+++ |++|++++|+.+........+ . ...++.++.+|+.|.+.            .+
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLAR-GDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA   80 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            588999999999999999999999 899999998654333222222 1 12468899999998642            26


Q ss_pred             cCEEEEccCCCCCcc-------cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF-------YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      +|+||||||......       ..+.++..+++|+.++.++++.+.    +.+. ++|++||...+.
T Consensus        81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~  147 (250)
T 2cfc_A           81 IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLV  147 (250)
T ss_dssp             CCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred             CCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhcc
Confidence            999999999654321       123455678999999987766653    4454 999999987654

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=99.70  E-value=1e-16  Score=125.72  Aligned_cols=122  Identities=15%  Similarity=0.192  Sum_probs=93.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+............  ...++.++.+|+.|...            
T Consensus        45 l~gk~vlVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  123 (291)
T 3ijr_A           45 LKGKNVLITGGDSGIGRAVSIAFAKE-GANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQL  123 (291)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            47899999999999999999999999 8999999887543333222221  23578999999998642            


Q ss_pred             CCcCEEEEccCCCCCcc-----cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~  152 (190)
                      .++|+||||||......     ..+.++..+++|+.++.++++++...   +.++|++||...+.
T Consensus       124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~  188 (291)
T 3ijr_A          124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYE  188 (291)
T ss_dssp             SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHH
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcC
Confidence            26999999999654321     23345678999999999999999764   23899999988664

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=99.70  E-value=6.1e-17  Score=125.43  Aligned_cols=122  Identities=16%  Similarity=0.053  Sum_probs=92.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ...+.++.+|++|.+.            .
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVA-GAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999999 89999999875544333333322 3478889999998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      ++|+||||||......    ..+.++..+++|+.++.++.+++.    +.+. ++|++||...+.
T Consensus        81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~  145 (264)
T 3tfo_A           81 RIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALS  145 (264)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcc
Confidence            6999999999765322    223455679999999998887764    3344 899999977553

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=99.70  E-value=6.9e-17  Score=126.89  Aligned_cols=122  Identities=13%  Similarity=0.036  Sum_probs=91.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+..........+..  ..++.++.+|+.|.+.            
T Consensus        24 l~~k~vlITGasggiG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  102 (302)
T 1w6u_A           24 FQGKVAFITGGGTGLGKGMTTLLSSL-GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA  102 (302)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence            47799999999999999999999999 89999999865433322222211  3478999999998642            


Q ss_pred             CCcCEEEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHHHH-----cC-CeEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR-----VG-ARILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~-----~~-~~~i~vSS~~~~~  152 (190)
                      .++|+||||||.....    ...+.++..+++|+.++.++++.+.+     .+ .++|++||...+.
T Consensus       103 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~  169 (302)
T 1w6u_A          103 GHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET  169 (302)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEccccccc
Confidence            2589999999965431    12334567899999999999887743     23 3899999987654

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=99.70  E-value=6.3e-17  Score=124.99  Aligned_cols=121  Identities=16%  Similarity=0.017  Sum_probs=91.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+. ....+.++.+|+++...            .
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSL-GARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            46799999999999999999999999 8999999997554433333332 23578899999998642            3


Q ss_pred             CcCEEEEccCCCCC--c---ccccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecceec
Q 029640           97 EVDQIYHLACPASP--I---FYKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~--~---~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~~  151 (190)
                      ++|+||||||....  .   ...+..+..+++|+.++.++++++..    .+ .++|++||...+
T Consensus       106 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~  170 (262)
T 3rkr_A          106 RCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGK  170 (262)
T ss_dssp             CCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSS
T ss_pred             CCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhc
Confidence            59999999997322  1   12234556899999999999888643    34 399999997654

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=99.70  E-value=7.2e-18  Score=128.98  Aligned_cols=107  Identities=16%  Similarity=0.072  Sum_probs=84.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc---------CCcCEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL---------IEVDQIY  102 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---------~~~d~vi  102 (190)
                      ||+++||||+|+||+++++.|+++ |++|++++|+......            .+.+|+.+...         .++|+||
T Consensus         1 Mk~vlVtGasg~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~------------~~~~D~~~~~~~~~~~~~~~~~~d~vi   67 (255)
T 2dkn_A            1 MSVIAITGSASGIGAALKELLARA-GHTVIGIDRGQADIEA------------DLSTPGGRETAVAAVLDRCGGVLDGLV   67 (255)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSSSSEEC------------CTTSHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEeCChhHccc------------cccCCcccHHHHHHHHHHcCCCccEEE
Confidence            368999999999999999999999 8999999997543211            15577776421         3799999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc----C-CeEEEEecceecCCC
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV----G-ARILLTSTSEVYGDP  154 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~i~vSS~~~~~~~  154 (190)
                      ||||....   ...++..+++|+.++.++++++.+.    + .++|++||..+|+..
T Consensus        68 ~~Ag~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~  121 (255)
T 2dkn_A           68 CCAGVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPG  121 (255)
T ss_dssp             ECCCCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTT
T ss_pred             ECCCCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEecccccccc
Confidence            99986542   2457788999999999999987654    4 499999999988753

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=99.70  E-value=1e-16  Score=124.07  Aligned_cols=121  Identities=16%  Similarity=0.134  Sum_probs=89.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc---CCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+..   ..++.++.+|+.|.+.           
T Consensus        11 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   89 (267)
T 1iy8_A           11 FTDRVVLITGGGSGLGRATAVRLAAE-GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   89 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46799999999999999999999999 89999999865433322222211   3578899999998642           


Q ss_pred             -CCcCEEEEccCCCCC-c-c---cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceec
Q 029640           96 -IEVDQIYHLACPASP-I-F---YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~-~-~---~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~  151 (190)
                       .++|+||||||.... . .   ..+.++..+++|+.++.++.+.+    ++.+ .++|++||...+
T Consensus        90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~  156 (267)
T 1iy8_A           90 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGI  156 (267)
T ss_dssp             HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGT
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhc
Confidence             269999999996543 1 1   22345567999999988776655    4445 499999997654

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=99.70  E-value=3.5e-17  Score=124.92  Aligned_cols=121  Identities=17%  Similarity=0.083  Sum_probs=89.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+........+.  ...++.++.+|+.|...            
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLASA-GSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLV   83 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            46789999999999999999999999 8999999986443322222221  13478899999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++++.+    ++.+. ++|++||...+
T Consensus        84 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~  148 (248)
T 2pnf_A           84 DGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGF  148 (248)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHH
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhc
Confidence            26999999999654321    22345568999999997776655    34454 89999997644

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=99.70  E-value=1e-16  Score=123.90  Aligned_cols=121  Identities=17%  Similarity=0.101  Sum_probs=92.4

Q ss_pred             cCCCEEEEEcccc-hHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAG-FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G-~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||+| .||+++++.|+++ |++|++++|+.+........+..  ..++.++.+|+.|.+.           
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLE-GADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHC-CCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            5789999999987 6999999999999 89999999976544443333322  2579999999998642           


Q ss_pred             -CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc-----CC-eEEEEecceec
Q 029640           96 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-----GA-RILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~-----~~-~~i~vSS~~~~  151 (190)
                       .++|+||||||......    ..+.++..+++|+.++.++++.+...     +. ++|++||...+
T Consensus        99 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~  165 (266)
T 3o38_A           99 AGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGW  165 (266)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGT
T ss_pred             hCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHc
Confidence             26899999999755422    22345567999999999999887543     33 89999997654

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=99.70  E-value=8.4e-17  Score=124.52  Aligned_cols=121  Identities=14%  Similarity=0.010  Sum_probs=92.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~-----------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.   +..++.++.+|++|...           
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEA-GAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT   84 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            57899999999999999999999999 8999999987554433333332   23358999999998642           


Q ss_pred             -CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceec
Q 029640           96 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~  151 (190)
                       .++|+||||||......    ..+.++..+++|+.++.++++++..    .+. ++|++||...+
T Consensus        85 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~  150 (265)
T 3lf2_A           85 LGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLAS  150 (265)
T ss_dssp             HCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGT
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccC
Confidence             36999999999754321    2234556799999999999988843    333 89999997654

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=99.70  E-value=2.9e-16  Score=120.70  Aligned_cols=120  Identities=16%  Similarity=0.005  Sum_probs=89.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+  ......+.. ..++.++.+|+.|.+.            .
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~-G~~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARA-GANIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFG   78 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            36799999999999999999999999 899999998755  222222221 3468889999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      ++|+||||||......    ..+.++..+++|+.++.++.+.+    ++.+. ++|++||...+.
T Consensus        79 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  143 (255)
T 2q2v_A           79 GVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLV  143 (255)
T ss_dssp             SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhcc
Confidence            6999999999654321    22345568999999887776655    45554 999999987654

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=99.70  E-value=6.6e-17  Score=124.36  Aligned_cols=119  Identities=24%  Similarity=0.251  Sum_probs=89.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      +++++||||+|+||+++++.|++++ +..|++..|+.+........+  ..++.++.+|++|.+.            .++
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   79 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY--GDRFFYVVGDITEDSVLKQLVNAAVKGHGKI   79 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH--GGGEEEEESCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHhcCCc
Confidence            5899999999999999999999984 478888888644333222222  2478999999998742            369


Q ss_pred             CEEEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHH----HHcCCeEEEEecceecC
Q 029640           99 DQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGARILLTSTSEVYG  152 (190)
Q Consensus        99 d~vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~i~vSS~~~~~  152 (190)
                      |+||||||...+.     ...+.++..+++|+.++.++++++    ++.+.++|++||...+.
T Consensus        80 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~g~iv~isS~~~~~  142 (254)
T 3kzv_A           80 DSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACNM  142 (254)
T ss_dssp             CEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCSCCCC
T ss_pred             cEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEcCchhcc
Confidence            9999999975431     122345568999999999998887    44456999999976543

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=99.70  E-value=1.7e-16  Score=123.55  Aligned_cols=122  Identities=17%  Similarity=0.135  Sum_probs=91.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+....++.++.+|+.|.+.            .+
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEA-GARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSAR  105 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            47799999999999999999999999 899999998654333333333222368889999998632            36


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC-----CeEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG-----ARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~-----~~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+.++..+++|+.++.++++++.    +.+     .++|++||...+.
T Consensus       106 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~  173 (276)
T 2b4q_A          106 LDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGIS  173 (276)
T ss_dssp             CSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTC
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcC
Confidence            999999999654321    223455789999999988887763    222     4899999987654

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=99.70  E-value=6.6e-17  Score=126.24  Aligned_cols=121  Identities=16%  Similarity=0.086  Sum_probs=92.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|++|...            .
T Consensus         6 l~gk~vlVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   84 (280)
T 3tox_A            6 LEGKIAIVTGASSGIGRAAALLFARE-GAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFG   84 (280)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            36799999999999999999999999 89999999875544333333322 3578899999998642            3


Q ss_pred             CcCEEEEccCCCCC--c---ccccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceec
Q 029640           97 EVDQIYHLACPASP--I---FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~--~---~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~  151 (190)
                      ++|+||||||....  .   ...+.++..+++|+.++.++++++..    .+. ++|++||...+
T Consensus        85 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~  149 (280)
T 3tox_A           85 GLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGH  149 (280)
T ss_dssp             CCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTT
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhC
Confidence            69999999996532  1   12234567899999999999887743    343 89999997755

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=99.70  E-value=2.9e-16  Score=119.74  Aligned_cols=118  Identities=21%  Similarity=0.213  Sum_probs=92.6

Q ss_pred             cccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc--------cCCcC
Q 029640           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVD   99 (190)
Q Consensus        28 ~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~d   99 (190)
                      .+++||+++||||++.||+++++.|+++ |.+|.+.+|+.+.....     ...++..+++|++|++        +.++|
T Consensus         7 dlf~GK~alVTGas~GIG~aia~~la~~-Ga~Vv~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~g~iD   80 (242)
T 4b79_A            7 DIYAGQQVLVTGGSSGIGAAIAMQFAEL-GAEVVALGLDADGVHAP-----RHPRIRREELDITDSQRLQRLFEALPRLD   80 (242)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSTTSTTSC-----CCTTEEEEECCTTCHHHHHHHHHHCSCCS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHhhh-----hcCCeEEEEecCCCHHHHHHHHHhcCCCC
Confidence            3458999999999999999999999999 89999999976654322     2357899999999864        34699


Q ss_pred             EEEEccCCCCCcc--cccCchhHHHHHHHHHHHHHHHHH----HcCCeEEEEecceec
Q 029640          100 QIYHLACPASPIF--YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVY  151 (190)
Q Consensus       100 ~vi~~ag~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~vSS~~~~  151 (190)
                      ++|||||...+..  ..+.++..+++|+.++..+.+++.    +.+.++|++||...+
T Consensus        81 iLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~  138 (242)
T 4b79_A           81 VLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYST  138 (242)
T ss_dssp             EEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGT
T ss_pred             EEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            9999999765422  223456689999999998887763    334599999997643

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=99.70  E-value=9.2e-17  Score=126.57  Aligned_cols=122  Identities=16%  Similarity=0.058  Sum_probs=93.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|++|...            .
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARR-GARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLG  107 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            46799999999999999999999999 89999999975544433333322 3578999999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC--CeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~i~vSS~~~~~  152 (190)
                      ++|+||||||......    ..+..+..+++|+.++.++++++.    +.+  .++|++||...+.
T Consensus       108 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~  173 (301)
T 3tjr_A          108 GVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLV  173 (301)
T ss_dssp             SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC
Confidence            6999999999765321    223455689999999999988873    333  3899999977553

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=99.70  E-value=7.4e-17  Score=125.20  Aligned_cols=122  Identities=17%  Similarity=0.050  Sum_probs=88.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhh-cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      ..+++++||||+|+||+++++.|+++ |++|.+. .|+.+........+. ...++.++.+|+.|...            
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  102 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQ-GWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQF  102 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            45789999999999999999999999 8888776 454332222222221 23578899999998642            


Q ss_pred             CCcCEEEEccCCCCC-c-c---cccCchhHHHHHHHHHHHHHHHHHHc-------C-CeEEEEecceecC
Q 029640           96 IEVDQIYHLACPASP-I-F---YKYNPVKTIKTNVIGTLNMLGLAKRV-------G-ARILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~-~-~---~~~~~~~~~~~n~~~~~~l~~~~~~~-------~-~~~i~vSS~~~~~  152 (190)
                      .++|+||||||.... . .   ..+.++..+++|+.++.++++.+...       + .++|++||...+.
T Consensus       103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~  172 (272)
T 4e3z_A          103 GRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAIL  172 (272)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHH
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhcc
Confidence            269999999997653 1 1   22345668999999999998887543       2 3899999987654

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=99.70  E-value=1e-16  Score=123.76  Aligned_cols=120  Identities=18%  Similarity=0.042  Sum_probs=89.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+.  .++.++.+|+.|.+.            .+
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~~~~~~~~g~   86 (263)
T 3ak4_A           10 LSGRKAIVTGGSKGIGAAIARALDKA-GATVAIADLDVMAAQAVVAGLE--NGGFAVEVDVTKRASVDAAMQKAIDALGG   86 (263)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTCT--TCCEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHh--cCCeEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            46789999999999999999999999 8999999986543222222221  267889999998642            26


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+.++..+++|+.++.++++++.+    .+  .++|++||...+.
T Consensus        87 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  151 (263)
T 3ak4_A           87 FDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKV  151 (263)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccc
Confidence            999999999654321    1234556799999999999887753    33  4999999976543

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=99.70  E-value=4.8e-17  Score=125.34  Aligned_cols=121  Identities=21%  Similarity=0.154  Sum_probs=88.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--------CCceEEEecccccccc------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--------HPRFELIRHDVTEPLL------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+..........+..        ..++.++.+|+.|...      
T Consensus         5 ~~~k~vlITGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   83 (264)
T 2pd6_A            5 LRSALALVTGAGSGIGRAVSVRLAGE-GATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLE   83 (264)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHH
Confidence            46789999999999999999999999 89999999865433222222211        1467889999998642      


Q ss_pred             ------CCc-CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc----C--CeEEEEecceec
Q 029640           96 ------IEV-DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G--ARILLTSTSEVY  151 (190)
Q Consensus        96 ------~~~-d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~i~vSS~~~~  151 (190)
                            .++ |+||||||......    ..+.++..+++|+.++.++++++.+.    +  .++|++||...+
T Consensus        84 ~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~  156 (264)
T 2pd6_A           84 QVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGK  156 (264)
T ss_dssp             HHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHH
T ss_pred             HHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhc
Confidence                  235 99999999765321    23345668999999999999887543    3  389999997644

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=99.70  E-value=6.1e-17  Score=127.29  Aligned_cols=122  Identities=21%  Similarity=0.137  Sum_probs=91.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccc-cc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEP-LL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~-~~-----------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+..........+..  ..++.++.+|+.+. ..           
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSN-GIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            36799999999999999999999999 89999999976554444444432  24789999999997 31           


Q ss_pred             -CCcCEEEEccCCCCCc----------------------------------ccccCchhHHHHHHHHHHHHHHHHHH---
Q 029640           96 -IEVDQIYHLACPASPI----------------------------------FYKYNPVKTIKTNVIGTLNMLGLAKR---  137 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~----------------------------------~~~~~~~~~~~~n~~~~~~l~~~~~~---  137 (190)
                       .++|+||||||.....                                  ...+..+..+++|+.++.++++++..   
T Consensus        89 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~  168 (311)
T 3o26_A           89 FGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQ  168 (311)
T ss_dssp             HSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhhc
Confidence             3699999999976421                                  01223455799999999999887743   


Q ss_pred             -cC-CeEEEEecceecC
Q 029640          138 -VG-ARILLTSTSEVYG  152 (190)
Q Consensus       138 -~~-~~~i~vSS~~~~~  152 (190)
                       .+ .+||++||...+.
T Consensus       169 ~~~~~~IV~isS~~~~~  185 (311)
T 3o26_A          169 LSDSPRIVNVSSSTGSL  185 (311)
T ss_dssp             TSSSCEEEEECCGGGSG
T ss_pred             cCCCCeEEEEecCCccc
Confidence             33 3999999977543

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=99.70  E-value=9.2e-17  Score=122.90  Aligned_cols=122  Identities=18%  Similarity=0.066  Sum_probs=88.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC-CCCCChhhhhhhh-cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN-YFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r-~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.| +.+........+. ...++.++.+|+.|.+.            
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQ-GANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVF   80 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46799999999999999999999999 899999888 4322222222221 13468889999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++.+.+.    +.+. ++|++||...+.
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  146 (246)
T 2uvd_A           81 GQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVT  146 (246)
T ss_dssp             SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcC
Confidence            26999999999754321    223455689999999887776653    3454 999999987543

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=99.70  E-value=1.1e-16  Score=124.39  Aligned_cols=122  Identities=15%  Similarity=0.083  Sum_probs=89.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC-CCCCChhhhhhhhc--CCceEEEecccccc----cc-------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN-YFTGSKDNLRKWIG--HPRFELIRHDVTEP----LL-------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r-~~~~~~~~~~~~~~--~~~~~~~~~D~~~~----~~-------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++| +.+........+..  ...+.++.+|+.|.    +.       
T Consensus         9 ~~~k~~lVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   87 (276)
T 1mxh_A            9 SECPAAVITGGARRIGHSIAVRLHQQ-GFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDC   87 (276)
T ss_dssp             --CCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHH
Confidence            46789999999999999999999999 899999988 54332222222211  34788999999987    42       


Q ss_pred             -----CCcCEEEEccCCCCCcc----cc-----------cCchhHHHHHHHHHHHHHHHHHHc---C-------CeEEEE
Q 029640           96 -----IEVDQIYHLACPASPIF----YK-----------YNPVKTIKTNVIGTLNMLGLAKRV---G-------ARILLT  145 (190)
Q Consensus        96 -----~~~d~vi~~ag~~~~~~----~~-----------~~~~~~~~~n~~~~~~l~~~~~~~---~-------~~~i~v  145 (190)
                           .++|+||||||......    ..           +.++..+++|+.++.++++++...   +       .++|++
T Consensus        88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~i  167 (276)
T 1mxh_A           88 SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNL  167 (276)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEE
T ss_pred             HHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Confidence                 26999999999654321    11           334567999999999999988663   2       489999


Q ss_pred             ecceecC
Q 029640          146 STSEVYG  152 (190)
Q Consensus       146 SS~~~~~  152 (190)
                      ||...+.
T Consensus       168 sS~~~~~  174 (276)
T 1mxh_A          168 CDAMTDL  174 (276)
T ss_dssp             CCGGGGS
T ss_pred             CchhhcC
Confidence            9987664

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=99.70  E-value=5.8e-17  Score=126.06  Aligned_cols=119  Identities=18%  Similarity=0.157  Sum_probs=89.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++.+|++|.+.            .+
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  102 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGA-GYGVALAGRRLDALQETAAEI--GDDALCVPTDVTDPDSVRALFTATVEKFGR  102 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH--TSCCEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh--CCCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            36789999999999999999999999 899999998655443333333  2578899999998642            26


Q ss_pred             cCEEEEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHHHH----cC---CeEEEEecceec
Q 029640           98 VDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAKR----VG---ARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~---~~~i~vSS~~~~  151 (190)
                      +|+||||||...+.  .   ..+.++..+++|+.++.++++++..    .+   .++|++||...+
T Consensus       103 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~  168 (272)
T 4dyv_A          103 VDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISAT  168 (272)
T ss_dssp             CCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTT
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhc
Confidence            99999999975431  1   2234567899999999888887643    32   389999997654

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=99.70  E-value=1.5e-16  Score=123.83  Aligned_cols=121  Identities=19%  Similarity=0.116  Sum_probs=91.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|+.|.+.            .
T Consensus        20 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           20 QDSEVALVTGATSGIGLEIARRLGKE-GLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG   98 (277)
T ss_dssp             TTSCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            46789999999999999999999999 89999999865433322222221 3468889999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc------C-CeEEEEecceec
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV------G-ARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~------~-~~~i~vSS~~~~  151 (190)
                      ++|+||||||......    ..+.++..+++|+.++.++++++.+.      + .++|++||...+
T Consensus        99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~  164 (277)
T 2rhc_B           99 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGK  164 (277)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGT
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccc
Confidence            6999999999654321    12234568999999999999887554      4 389999997654

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=99.70  E-value=1.3e-16  Score=123.97  Aligned_cols=120  Identities=15%  Similarity=0.042  Sum_probs=91.5

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~-----------   95 (190)
                      +.+++++||||+  |+||+++++.|+++ |++|++++|+.+ ....+..+.. ...+.++.+|+.|.+.           
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~-G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQ-GATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD   81 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTT-TCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHH
Confidence            467999999999  99999999999999 899999999765 3333333321 1247888999998642           


Q ss_pred             -CCcCEEEEccCCCCC--------cccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceec
Q 029640           96 -IEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~  151 (190)
                       .++|+||||||....        ....+.++..+++|+.++.++++++...   +.++|++||...+
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~  149 (275)
T 2pd4_A           82 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGST  149 (275)
T ss_dssp             TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT
T ss_pred             cCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhc
Confidence             268999999997542        1123345568999999999999999765   3489999996654

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=99.70  E-value=7e-16  Score=118.70  Aligned_cols=111  Identities=20%  Similarity=0.234  Sum_probs=87.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+...          .+.++.+|+.|.+.            .+
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~----------~~~~~~~Dl~d~~~v~~~~~~~~~~~g~   87 (253)
T 2nm0_A           19 HMSRSVLVTGGNRGIGLAIARAFADA-GDKVAITYRSGEPPE----------GFLAVKCDITDTEQVEQAYKEIEETHGP   87 (253)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSSCCCT----------TSEEEECCTTSHHHHHHHHHHHHHHTCS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCChHhhc----------cceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999 899999998654422          36788999998642            35


Q ss_pred             cCEEEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~  151 (190)
                      +|+||||||.....    ...+.++..+++|+.++.++++++.+    .+. ++|++||...+
T Consensus        88 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~  150 (253)
T 2nm0_A           88 VEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGL  150 (253)
T ss_dssp             CSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhC
Confidence            89999999975432    13456778899999999999887643    344 89999996644

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=99.70  E-value=1.4e-16  Score=122.51  Aligned_cols=119  Identities=19%  Similarity=0.083  Sum_probs=88.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CCc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      +++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|+.|.+.            .++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKD-GFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF   80 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            578999999999999999999999 89999999865433322222211 3468899999998642            269


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceec
Q 029640           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVY  151 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~  151 (190)
                      |+||||||......    ..+.++..+++|+.++.++++++.+    .+  .++|++||...+
T Consensus        81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  143 (256)
T 1geg_A           81 DVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGH  143 (256)
T ss_dssp             CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhc
Confidence            99999999654321    1233456799999999888777643    34  389999997654

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=99.70  E-value=8.2e-17  Score=123.98  Aligned_cols=120  Identities=18%  Similarity=0.190  Sum_probs=92.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++.+|+.|...            .+
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEG-GAEVLLTGRNESNIARIREEF--GPRVHALRSDIADLNEIAVLGAAAGQTLGA   82 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--CCcceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            36799999999999999999999999 899999998654433322222  2478999999998642            36


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+.++..+++|+.++.++++++...   +.++|++||...+.
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~  144 (255)
T 4eso_A           83 IDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG  144 (255)
T ss_dssp             EEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC
Confidence            999999999765322    23345567999999999999999764   23899999977544

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=99.70  E-value=2.2e-16  Score=121.59  Aligned_cols=120  Identities=19%  Similarity=0.172  Sum_probs=90.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC--Chhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG--SKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~--~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++||||+|+||+++++.|+++ |++|++++|+.+.  .......+.. ..++.++.+|+.|.+.            .
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   80 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAAD-GFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG   80 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            588999999999999999999999 8999999886543  2222222221 3478899999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~~  152 (190)
                      ++|+||||||......    ..+.++..+++|+.++.++++++.+    .+  .++|++||...+.
T Consensus        81 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  146 (258)
T 3a28_C           81 GFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ  146 (258)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTS
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhcc
Confidence            6999999999754321    2234556799999999999888754    23  5899999977554

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.70  E-value=5.9e-16  Score=119.12  Aligned_cols=116  Identities=22%  Similarity=0.242  Sum_probs=88.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+. ......+ .  . .++.+|+.|.+.            .+
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~-~~~~~~~-~--~-~~~~~D~~~~~~~~~~~~~~~~~~g~   77 (256)
T 2d1y_A            4 FAGKGVLVTGGARGIGRAIAQAFARE-GALVALCDLRPEG-KEVAEAI-G--G-AFFQVDLEDERERVRFVEEAAYALGR   77 (256)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSTTH-HHHHHHH-T--C-EEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCChhH-HHHHHHh-h--C-CEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            36789999999999999999999999 8999999997654 3322222 1  3 788899998632            26


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~  151 (190)
                      +|+||||||.......    .+.++..+++|+.++.++++++..    .+. ++|++||...+
T Consensus        78 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~  140 (256)
T 2d1y_A           78 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGL  140 (256)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGT
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcccccc
Confidence            9999999997643221    223456899999999999887743    344 89999997654

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=99.70  E-value=7e-17  Score=123.86  Aligned_cols=120  Identities=18%  Similarity=0.081  Sum_probs=91.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+  ......+++|+.|.+.            .+
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   83 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAER-GAKVIGTATSESGAQAISDYL--GDNGKGMALNVTNPESIEAVLKAITDEFGG   83 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--cccceEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999 899999998654433333322  2357889999998642            26


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+.++..+++|+.++.++++++..    .+. ++|++||...+.
T Consensus        84 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~  147 (248)
T 3op4_A           84 VDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTM  147 (248)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC
Confidence            999999999765422    2334556899999999999888743    344 899999977543

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=99.69  E-value=1.2e-16  Score=123.16  Aligned_cols=122  Identities=11%  Similarity=0.046  Sum_probs=92.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|++|.+.            .
T Consensus         4 l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (257)
T 3imf_A            4 MKEKVVIITGGSSGMGKGMATRFAKE-GARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFG   82 (257)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999 89999999875544433333322 3478999999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH-----HcC-CeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK-----RVG-ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~-----~~~-~~~i~vSS~~~~~  152 (190)
                      ++|+||||||......    ..+.++..+++|+.++.++.+++.     +.+ .++|++||...+.
T Consensus        83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  148 (257)
T 3imf_A           83 RIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWD  148 (257)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGS
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhcc
Confidence            6999999999654321    223455679999999999988873     332 4899999977553

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=99.69  E-value=5.5e-17  Score=128.87  Aligned_cols=122  Identities=18%  Similarity=0.087  Sum_probs=92.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc---CCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~-----------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+..........+..   ...+.++.+|+++...           
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~-G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   84 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQ-GCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR   84 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            36789999999999999999999999 89999999976544433333221   2278999999998642           


Q ss_pred             -CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc-----------CCeEEEEecceecC
Q 029640           96 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-----------GARILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~-----------~~~~i~vSS~~~~~  152 (190)
                       .++|+||||||......    ..+..+..+++|+.++.++++++...           +.+||++||...+.
T Consensus        85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~  157 (319)
T 3ioy_A           85 FGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFL  157 (319)
T ss_dssp             TCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTC
T ss_pred             CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccccccc
Confidence             36899999999654322    22345568999999999998877432           23799999987654

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1e-16  Score=125.63  Aligned_cols=121  Identities=15%  Similarity=0.147  Sum_probs=91.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCC---eEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc--------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN---EVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL--------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~---~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~--------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |+   .|++..|+.+........+.   ...++.++.+|++|.+.        
T Consensus        31 l~~k~~lVTGas~GIG~aia~~l~~~-G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~  109 (287)
T 3rku_A           31 LAKKTVLITGASAGIGKATALEYLEA-SNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENL  109 (287)
T ss_dssp             HTTCEEEEESTTSHHHHHHHHHHHHH-HTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTS
T ss_pred             cCCCEEEEecCCChHHHHHHHHHHHc-CCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence            57899999999999999999999998 55   89999887554433333322   24578999999998742        


Q ss_pred             ----CCcCEEEEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceec
Q 029640           96 ----IEVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVY  151 (190)
Q Consensus        96 ----~~~d~vi~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~  151 (190)
                          .++|+||||||.....  .   ..+.++..+++|+.++.++++++    ++.+ .+||++||...+
T Consensus       110 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~  179 (287)
T 3rku_A          110 PQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGR  179 (287)
T ss_dssp             CGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGT
T ss_pred             HHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhc
Confidence                2699999999965421  1   23345678999999999999887    3344 499999997654

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=99.69  E-value=1.2e-16  Score=121.20  Aligned_cols=118  Identities=16%  Similarity=-0.002  Sum_probs=86.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      ++++++||||+|+||+++++.|+++ |++|+++.|+.+........+   .++.++.+|+.|...            .++
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAK-GYRVGLMARDEKRLQALAAEL---EGALPLPGDVREEGDWARAVAAMEEAFGEL   79 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh---hhceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4578999999999999999999999 899999998643322221111   267889999998632            268


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      |+|||+||......    ..+.++..+++|+.++.++++.+    ++.+. ++|++||...+.
T Consensus        80 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~  142 (234)
T 2ehd_A           80 SALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKN  142 (234)
T ss_dssp             CEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTS
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcC
Confidence            99999999654321    12335567999999998666554    44555 899999976553

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=99.69  E-value=3.9e-16  Score=119.75  Aligned_cols=113  Identities=21%  Similarity=0.162  Sum_probs=87.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+..         ...+.++.+|+.|.+.            .+
T Consensus         5 l~~k~vlVTGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~   74 (250)
T 2fwm_X            5 FSGKNVWVTGAGKGIGYATALAFVEA-GAKVTGFDQAFTQE---------QYPFATEVMDVADAAQVAQVCQRLLAETER   74 (250)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCCCSS---------CCSSEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCchhhh---------cCCceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46789999999999999999999999 89999999875421         1137888899998642            26


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+.++..+++|+.++.++++++    ++.+ .++|++||...+.
T Consensus        75 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~  138 (250)
T 2fwm_X           75 LDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHT  138 (250)
T ss_dssp             CCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC
Confidence            999999999654321    22345678999999999998887    3444 4999999977653

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=99.69  E-value=1.6e-16  Score=120.53  Aligned_cols=120  Identities=14%  Similarity=0.043  Sum_probs=90.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh--hcCCceEEEecccccccc------------C
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +|++++||||+|+||+++++.|+++ |++|++++|+.+........+  ....++.++.+|++|.+.            .
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARD-GYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            3689999999999999999999999 899999999755443333332  124578999999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceec
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~  151 (190)
                      ++|+||||||......    ..+.++..+++|+.++.++++++..    .+.++|++||...+
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~  142 (235)
T 3l77_A           80 DVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSA  142 (235)
T ss_dssp             SCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGS
T ss_pred             CCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhc
Confidence            6999999999765432    2334566899999999999888754    34578888876543

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=99.69  E-value=1.5e-16  Score=122.87  Aligned_cols=122  Identities=19%  Similarity=0.124  Sum_probs=90.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|+.|.+.            .
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (262)
T 1zem_A            5 FNGKVCLVTGAGGNIGLATALRLAEE-GTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG   83 (262)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            46799999999999999999999999 89999999865433322222221 2468889999998642            2


Q ss_pred             CcCEEEEccCCC-CCc-c---cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceecC
Q 029640           97 EVDQIYHLACPA-SPI-F---YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~-~~~-~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~~  152 (190)
                      ++|+||||||.. ... .   ..+.++..+++|+.++.++++++.+    .+. ++|++||...+.
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  149 (262)
T 1zem_A           84 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK  149 (262)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS
T ss_pred             CCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc
Confidence            699999999965 221 1   2234556799999999999888754    344 899999977654

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=99.69  E-value=2.3e-16  Score=122.60  Aligned_cols=119  Identities=17%  Similarity=0.103  Sum_probs=89.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh-hhhhh-cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-~~~~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |+.|++++++....... ...+. ...++.++.+|+.|.+.            
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALE-GAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEAL  107 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999 88998886654322222 22221 13578899999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++++++...   +.++|++||..
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~  168 (271)
T 3v2g_A          108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNL  168 (271)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGG
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChh
Confidence            26999999999765322    22345668999999999999998765   34899999854

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=99.69  E-value=2e-16  Score=121.15  Aligned_cols=122  Identities=15%  Similarity=0.055  Sum_probs=91.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|+.|.+.            .
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   83 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAE-GAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALG   83 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999999 89999999865433322222221 3468899999998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~~  152 (190)
                      ++|+||||||......    ..+.++..+++|+.++.++++++..    .+.++|++||...+.
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~  147 (247)
T 2jah_A           84 GLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGRV  147 (247)
T ss_dssp             CCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTC
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHhcC
Confidence            6999999999654321    1233456799999999999888743    235899999976543

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=99.69  E-value=1.8e-16  Score=123.57  Aligned_cols=122  Identities=20%  Similarity=0.155  Sum_probs=91.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC--------hhhhhh----h-hcCCceEEEecccccccc-
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--------KDNLRK----W-IGHPRFELIRHDVTEPLL-   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~--------~~~~~~----~-~~~~~~~~~~~D~~~~~~-   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+....        ...+..    + ....++.++++|++|.+. 
T Consensus         8 l~~k~~lVTGas~gIG~a~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   86 (281)
T 3s55_A            8 FEGKTALITGGARGMGRSHAVALAEA-GADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAAL   86 (281)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence            47899999999999999999999999 89999999864321        111111    1 123578999999998642 


Q ss_pred             -----------CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           96 -----------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 -----------~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                                 .++|+||||||......    ..+.++..+++|+.++.++++++.    +.+. ++|++||...+.
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  163 (281)
T 3s55_A           87 ESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHS  163 (281)
T ss_dssp             HHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcC
Confidence                       26999999999765321    233456679999999999998863    3444 999999977654

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=99.69  E-value=1e-16  Score=122.59  Aligned_cols=122  Identities=19%  Similarity=0.133  Sum_probs=89.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+........+....++.++.+|+.|.+.            .+
T Consensus         4 ~~~k~vlVtGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (251)
T 1zk4_A            4 LDGKVAIITGGTLGIGLAIATKFVEE-GAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGP   82 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            46799999999999999999999999 899999998654333222222222578999999998642            25


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcC--CeEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVG--ARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~--~~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+.++..+++|+.++.++.+.+    ++.+  .++|++||...+.
T Consensus        83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~  147 (251)
T 1zk4_A           83 VSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV  147 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhcc
Confidence            999999999654321    12334568999999888776655    3444  3899999987654

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.69  E-value=1.7e-16  Score=120.60  Aligned_cols=112  Identities=21%  Similarity=0.216  Sum_probs=87.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------------C
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------------~   96 (190)
                      ++++++||||+|+||+++++.|+++ |++|++++|+.+...         ....++.+|+.|.+.              .
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g   71 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKN-GYTVLNIDLSANDQA---------DSNILVDGNKNWTEQEQSILEQTASSLQGS   71 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHT-TEEEEEEESSCCTTS---------SEEEECCTTSCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEecCccccc---------cccEEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence            5689999999999999999999999 899999999765432         135677899997631              3


Q ss_pred             CcCEEEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~  152 (190)
                      ++|+||||||.....     ...+.++..+++|+.++.++++++...   +.++|++||...+.
T Consensus        72 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~  135 (236)
T 1ooe_A           72 QVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG  135 (236)
T ss_dssp             CEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS
T ss_pred             CCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhcc
Confidence            799999999965421     122345668999999999999988764   23899999977653

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=99.69  E-value=9.2e-17  Score=123.11  Aligned_cols=120  Identities=23%  Similarity=0.250  Sum_probs=92.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++.+|+.|.+.            .+
T Consensus         4 l~gk~vlVTGas~gIG~a~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   80 (247)
T 3rwb_A            4 LAGKTALVTGAAQGIGKAIAARLAAD-GATVIVSDINAEGAKAAAASI--GKKARAIAADISDPGSVKALFAEIQALTGG   80 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHH--CTTEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence            47899999999999999999999999 899999998655443333333  4578999999998642            26


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcC-C-eEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVG-A-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~-~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+.++..+++|+.++.++.+++    ++.+ . ++|++||...+.
T Consensus        81 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  145 (247)
T 3rwb_A           81 IDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFA  145 (247)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhcc
Confidence            999999999764322    22345567999999999998874    4444 3 899999977554

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=99.69  E-value=2.6e-16  Score=122.47  Aligned_cols=104  Identities=17%  Similarity=0.296  Sum_probs=83.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhc-CCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~-~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag  106 (190)
                      |+|+||||+|+||+++++.|+++ .+++|+++.|+....... .    ..++.++.+|+.|..     +.++|+|||+|+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l-~----~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   75 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTL-A----DQGVEVRHGDYNQPESLQKAFAGVSKLLFISG   75 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHH-H----HTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHH-h----hcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence            57999999999999999999987 368999999975543321 1    136788999999864     357999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceec
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY  151 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~  151 (190)
                      .. .   .    .  ++|+.++.+++++|++.++ ++|++||.++|
T Consensus        76 ~~-~---~----~--~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~  111 (287)
T 2jl1_A           76 PH-Y---D----N--TLLIVQHANVVKAARDAGVKHIAYTGYAFAE  111 (287)
T ss_dssp             CC-S---C----H--HHHHHHHHHHHHHHHHTTCSEEEEEEETTGG
T ss_pred             CC-c---C----c--hHHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence            52 1   1    1  5799999999999999887 99999998775

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=99.69  E-value=1.8e-16  Score=121.11  Aligned_cols=122  Identities=14%  Similarity=0.042  Sum_probs=92.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|+.|...            .
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASK-GATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENL   81 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999999 89999999965543333332221 3578999999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~~  152 (190)
                      ++|+||||||......    ..+.++..+++|+.++.++++.+..    .+. ++|++||...+.
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  146 (247)
T 3lyl_A           82 AIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSA  146 (247)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc
Confidence            5899999999765422    2334566899999999999887643    344 899999977554

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=99.69  E-value=1.5e-16  Score=120.96  Aligned_cols=107  Identities=14%  Similarity=0.189  Sum_probs=80.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~  103 (190)
                      +++|+|+||||+|+||+++++.|+++ | ++|+++.|+.......     ....+.++++|+.|.+     +.++|+|||
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~-G~~~V~~~~R~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~   94 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADK-QTIKQTLFARQPAKIHKP-----YPTNSQIIMGDVLNHAALKQAMQGQDIVYA   94 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTC-TTEEEEEEESSGGGSCSS-----CCTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhC-CCceEEEEEcChhhhccc-----ccCCcEEEEecCCCHHHHHHHhcCCCEEEE
Confidence            35689999999999999999999999 7 8999999975543321     1347899999999864     357999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCC
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV  156 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~  156 (190)
                      ++|....              ...+.++++++++.+. +||++||..+|+....
T Consensus        95 ~a~~~~~--------------~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~  134 (236)
T 3qvo_A           95 NLTGEDL--------------DIQANSVIAAMKACDVKRLIFVLSLGIYDEVPG  134 (236)
T ss_dssp             ECCSTTH--------------HHHHHHHHHHHHHTTCCEEEEECCCCC------
T ss_pred             cCCCCch--------------hHHHHHHHHHHHHcCCCEEEEEecceecCCCCc
Confidence            9974211              1235688999999886 8999999999986443

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=99.69  E-value=1.1e-16  Score=123.48  Aligned_cols=120  Identities=18%  Similarity=0.100  Sum_probs=90.6

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||+  |+||+++++.|+++ |++|++++|+.+ ....+..+.. ...+.++.+|+.|.+.           
T Consensus         6 l~~k~vlVTGas~~~gIG~~ia~~l~~~-G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (261)
T 2wyu_A            6 LSGKKALVMGVTNQRSLGFAIAAKLKEA-GAEVALSYQAER-LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEA   83 (261)
T ss_dssp             CTTCEEEEESCCSSSSHHHHHHHHHHHH-TCEEEEEESCGG-GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEcCCHH-HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            467999999999  99999999999999 899999998753 2223333221 1247889999998642           


Q ss_pred             -CCcCEEEEccCCCCC-----c---ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceec
Q 029640           96 -IEVDQIYHLACPASP-----I---FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~-----~---~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~  151 (190)
                       .++|+||||||....     .   ...+.++..+++|+.++.++++++.+.   +.++|++||...+
T Consensus        84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~  151 (261)
T 2wyu_A           84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE  151 (261)
T ss_dssp             HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT
T ss_pred             cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEeccccc
Confidence             269999999996542     1   123345678999999999999999765   3489999997654

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=99.69  E-value=1.2e-16  Score=123.91  Aligned_cols=119  Identities=20%  Similarity=0.087  Sum_probs=89.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh-hhhhh-cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-~~~~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.++....... ...+. ...++.++.+|++|.+.            
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   94 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRL-GAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHF   94 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            47899999999999999999999999 88998876654322222 22221 23578999999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++++++...   +.++|++||..
T Consensus        95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence            26999999999765322    23345667999999999999988765   23899999954

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=99.69  E-value=1.5e-16  Score=124.26  Aligned_cols=122  Identities=16%  Similarity=0.062  Sum_probs=90.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|++|.+.            .
T Consensus        42 l~~k~vlITGasggIG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~  120 (285)
T 2c07_A           42 GENKVALVTGAGRGIGREIAKMLAKS-VSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHK  120 (285)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTT-SSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcC
Confidence            46799999999999999999999999 89999988764433322222222 3468899999998642            3


Q ss_pred             CcCEEEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      ++|+||||||.....    ...+.++..+++|+.++.++++.+.    +.+. ++|++||...+.
T Consensus       121 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~  185 (285)
T 2c07_A          121 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLT  185 (285)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhcc
Confidence            699999999976432    1233456789999999888877764    3454 999999987543

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.69  E-value=8.3e-16  Score=117.57  Aligned_cols=118  Identities=16%  Similarity=0.045  Sum_probs=89.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc--------cCCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~d~v  101 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+...    .+....++.++.+|+.|.+        +.++|+|
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~l   78 (246)
T 2ag5_A            4 LDGKVIILTAAAQGIGQAAALAFARE-GAKVIATDINESKLQ----ELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVL   78 (246)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHG----GGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHH----HHHhccCceEEEeeCCCHHHHHHHHHHhCCCCEE
Confidence            36799999999999999999999999 899999988643222    2211236889999999864        2469999


Q ss_pred             EEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640          102 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus       102 i~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      |||||......    ..+.++..+++|+.++.++++++.    +.+. ++|++||...+.
T Consensus        79 v~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  138 (246)
T 2ag5_A           79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSV  138 (246)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTT
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCc
Confidence            99999765321    123355678999999999988874    3344 999999976543

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=99.69  E-value=2.2e-16  Score=124.23  Aligned_cols=122  Identities=20%  Similarity=0.059  Sum_probs=90.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC--------hhhh----hhhh-cCCceEEEecccccccc-
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--------KDNL----RKWI-GHPRFELIRHDVTEPLL-   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~--------~~~~----~~~~-~~~~~~~~~~D~~~~~~-   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+....        ...+    ..+. ...++.++++|++|.+. 
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v  104 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLARE-GADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAM  104 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence            47899999999999999999999999 89999998863211        1111    1111 23578999999998642 


Q ss_pred             -----------CCcCEEEEccCCCCCcc-----cccCchhHHHHHHHHHHHHHHHHHHc----C--CeEEEEecceecC
Q 029640           96 -----------IEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV----G--ARILLTSTSEVYG  152 (190)
Q Consensus        96 -----------~~~d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~i~vSS~~~~~  152 (190)
                                 .++|+||||||......     ..+.++..+++|+.++.++++++...    +  .+||++||...+.
T Consensus       105 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~  183 (299)
T 3t7c_A          105 QAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLR  183 (299)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTS
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc
Confidence                       36999999999765322     23345678999999999999887432    2  3899999977553

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=99.69  E-value=9.2e-17  Score=123.21  Aligned_cols=121  Identities=19%  Similarity=0.172  Sum_probs=87.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+. ...++.++.+|++|...            .
T Consensus         7 ~~~k~vlITGas~giG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T 3qiv_A            7 FENKVGIVTGSGGGIGQAYAEALARE-GAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFG   85 (253)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999999 8999999986554443333332 23578899999998642            2


Q ss_pred             CcCEEEEccCCCCCc-------ccccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           97 EVDQIYHLACPASPI-------FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      ++|+||||||.....       ...+.++..+++|+.++.++.+.+    .+.+. ++|++||...|
T Consensus        86 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~  152 (253)
T 3qiv_A           86 GIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAW  152 (253)
T ss_dssp             CCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC----
T ss_pred             CCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCcccc
Confidence            699999999974211       122345568999999977776665    34444 89999998766

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.69  E-value=1.3e-16  Score=124.44  Aligned_cols=122  Identities=18%  Similarity=0.075  Sum_probs=91.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CC---ceEEEecccccccc----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HP---RFELIRHDVTEPLL----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~---~~~~~~~D~~~~~~----------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..   ++.++.+|+.|.+.          
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQE-GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   82 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHH
Confidence            36799999999999999999999999 89999999865433332222222 12   68899999998642          


Q ss_pred             --CCcCEEEEccCCCCCcc--------cccCchhHHHHHHHHHHHHHHHHHHc----CCeEEEEecceecC
Q 029640           96 --IEVDQIYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYG  152 (190)
Q Consensus        96 --~~~d~vi~~ag~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~vSS~~~~~  152 (190)
                        .++|+||||||......        ..+.++..+++|+.++.++++++...    +.++|++||...+.
T Consensus        83 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~  153 (280)
T 1xkq_A           83 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGP  153 (280)
T ss_dssp             HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS
T ss_pred             hcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCccccC
Confidence              26999999999654321        12335567999999999998887542    35899999977654

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=99.69  E-value=1.5e-16  Score=123.00  Aligned_cols=121  Identities=16%  Similarity=0.020  Sum_probs=91.7

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh-hcCCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW-IGHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~-----------   95 (190)
                      ..+++++||||+  |+||+++++.|+++ |++|++++|+.. ....+..+ .....+.++.+|++|...           
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~-G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   89 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKRE-GAELAFTYVGDR-FKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH   89 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHT-TCEEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHc-CCCEEEEecchh-hHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            478999999998  99999999999999 899999988743 22333332 123458899999998642           


Q ss_pred             -CCcCEEEEccCCCCCc---------ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecC
Q 029640           96 -IEVDQIYHLACPASPI---------FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~  152 (190)
                       .++|+||||||.....         ...+.+...+++|+.++.++++++...   +.++|++||...+.
T Consensus        90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~  159 (271)
T 3ek2_A           90 WDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER  159 (271)
T ss_dssp             CSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTS
T ss_pred             cCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecccccc
Confidence             3699999999976431         223345568999999999999999765   23899999977543

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.69  E-value=3.1e-16  Score=121.28  Aligned_cols=122  Identities=14%  Similarity=0.155  Sum_probs=92.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+. ...++.++++|++|.+.            .
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQ-GADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYG   87 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999 8999999996544433333332 23578999999998642            3


Q ss_pred             CcCEEEEccCCCCC--cc---cccCchhHHHHHHHHHHHHHHHHH----HcCCeEEEEecceecC
Q 029640           97 EVDQIYHLACPASP--IF---YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~--~~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~vSS~~~~~  152 (190)
                      ++|+||||||....  ..   ..+.++..+++|+.++.++++++.    +.+.++|++||...+.
T Consensus        88 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~  152 (264)
T 3ucx_A           88 RVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRH  152 (264)
T ss_dssp             CCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGC
T ss_pred             CCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhcc
Confidence            69999999986432  11   223455679999999999988764    3345999999977553

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=99.68  E-value=9.9e-17  Score=124.93  Aligned_cols=123  Identities=15%  Similarity=0.104  Sum_probs=93.5

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc-----------
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~-----------   95 (190)
                      .+++++++||||+|+||+++++.|+++ |++|++++|+.+........+.  ...++.++++|++|.+.           
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~  102 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRH-GCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKE  102 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTT-TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            357899999999999999999999999 8999999997554433333332  24578999999998742           


Q ss_pred             -CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecceecC
Q 029640           96 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~~~  152 (190)
                       .++|+||||||......    ..+.++..+++|+.++.++++++..    .+ .+||++||...+.
T Consensus       103 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  169 (277)
T 4fc7_A          103 FGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNR  169 (277)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHH
T ss_pred             cCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC
Confidence             36999999999654321    2334566899999999999988743    23 4899999977553

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=99.68  E-value=4.3e-16  Score=119.59  Aligned_cols=109  Identities=18%  Similarity=0.131  Sum_probs=84.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCCc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~   98 (190)
                      ++++++||||+|+||+++++.|+++ |++|++++|+.....           -..+.+|+.|.+            +.++
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~-G~~V~~~~r~~~~~~-----------~~~~~~d~~d~~~v~~~~~~~~~~~g~i   88 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSK-SWNTISIDFRENPNA-----------DHSFTIKDSGEEEIKSVIEKINSKSIKV   88 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCTTS-----------SEEEECSCSSHHHHHHHHHHHHTTTCCE
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCccccc-----------ccceEEEeCCHHHHHHHHHHHHHHcCCC
Confidence            6799999999999999999999999 899999999765432           134667887753            2358


Q ss_pred             CEEEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHHHHcC---CeEEEEecceec
Q 029640           99 DQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVY  151 (190)
Q Consensus        99 d~vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~vSS~~~~  151 (190)
                      |+||||||.....     ...+.++..+++|+.++.++++++...-   .++|++||...+
T Consensus        89 D~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~  149 (251)
T 3orf_A           89 DTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAAL  149 (251)
T ss_dssp             EEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG
T ss_pred             CEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhc
Confidence            9999999965432     1234456789999999999999987642   389999997765

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=99.68  E-value=5.4e-16  Score=119.81  Aligned_cols=122  Identities=12%  Similarity=0.043  Sum_probs=93.3

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhh--cCCceEEEecccccccc---------
Q 029640           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWI--GHPRFELIRHDVTEPLL---------   95 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~--~~~~~~~~~~D~~~~~~---------   95 (190)
                      +++++++||||+  |+||+++++.|+++ |+.|+++.|+.... ......+.  ...++.++.+|+.|.+.         
T Consensus        18 l~~k~vlITGas~~~giG~~~a~~l~~~-G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   96 (267)
T 3gdg_A           18 LKGKVVVVTGASGPKGMGIEAARGCAEM-GAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVV   96 (267)
T ss_dssp             CTTCEEEETTCCSSSSHHHHHHHHHHHT-SCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHHHC-CCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHH
Confidence            578999999999  99999999999999 89999998876554 33333332  14578999999998642         


Q ss_pred             ---CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceecC
Q 029640           96 ---IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVYG  152 (190)
Q Consensus        96 ---~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~~  152 (190)
                         .++|+||||||......    ..+.++..+++|+.++.++++++    ++.+ .++|++||...+.
T Consensus        97 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  165 (267)
T 3gdg_A           97 ADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHI  165 (267)
T ss_dssp             HHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS
T ss_pred             HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccc
Confidence               36899999999765432    22345668999999999998887    3444 4999999976543

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=99.68  E-value=1.6e-16  Score=121.84  Aligned_cols=122  Identities=11%  Similarity=0.031  Sum_probs=89.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC-CCCChhhhhhhhc-CCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~-~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+ ..........+.. ..++.++.+|+.|.+.            
T Consensus         5 l~~k~vlVTGasggiG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (258)
T 3afn_B            5 LKGKRVLITGSSQGIGLATARLFARA-GAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKF   83 (258)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            46799999999999999999999999 8999999997 4433332222221 3478899999998642            


Q ss_pred             CCcCEEEEccCC-CCCc-c---cccCchhHHHHHHHHHHHHHHHHHH----cC------CeEEEEecceecC
Q 029640           96 IEVDQIYHLACP-ASPI-F---YKYNPVKTIKTNVIGTLNMLGLAKR----VG------ARILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~-~~~~-~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~------~~~i~vSS~~~~~  152 (190)
                      .++|+||||||. .... .   ..+..+..+++|+.++.++++++..    .+      .++|++||...+.
T Consensus        84 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~  155 (258)
T 3afn_B           84 GGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHT  155 (258)
T ss_dssp             SSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHH
T ss_pred             CCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhcc
Confidence            269999999996 3221 1   1223456789999999988886632    12      4899999977654

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=99.68  E-value=1.9e-16  Score=121.68  Aligned_cols=121  Identities=16%  Similarity=0.065  Sum_probs=89.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEeccc--cccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDV--TEPL-----------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~--~~~~-----------   94 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+.  ....+.++.+|+  .+.+           
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARY-GATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999 8999999987544333322221  123678899999  6642           


Q ss_pred             -cCCcCEEEEccCCCCC--cc---cccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecceec
Q 029640           95 -LIEVDQIYHLACPASP--IF---YKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVY  151 (190)
Q Consensus        95 -~~~~d~vi~~ag~~~~--~~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~~  151 (190)
                       +.++|+||||||....  ..   ..+.++..+++|+.++.++++++.    +.+ .++|++||...+
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~  156 (252)
T 3f1l_A           89 NYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGR  156 (252)
T ss_dssp             HCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGT
T ss_pred             hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhc
Confidence             2369999999997432  11   223345679999999999998873    344 399999997654

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=99.68  E-value=2.5e-16  Score=121.40  Aligned_cols=122  Identities=11%  Similarity=0.036  Sum_probs=89.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc---CCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+..   ..++.++.+|+.|.+.           
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARN-GARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDL   83 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence            46789999999999999999999999 89999999865433322222211   2278899999998632           


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++.+.+.    +.+. ++|++||...+.
T Consensus        84 ~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  149 (260)
T 2z1n_A           84 GGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLR  149 (260)
T ss_dssp             TCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred             cCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcC
Confidence            13999999999654321    223455679999999977776653    4454 999999987664

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.68  E-value=2.9e-16  Score=123.56  Aligned_cols=122  Identities=16%  Similarity=0.072  Sum_probs=91.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CC---ceEEEecccccccc----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HP---RFELIRHDVTEPLL----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~---~~~~~~~D~~~~~~----------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..   ++.++.+|+.|...          
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  102 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKE-GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA  102 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            46799999999999999999999999 89999999865433332222221 12   68899999998642          


Q ss_pred             --CCcCEEEEccCCCCCcc------cccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceecC
Q 029640           96 --IEVDQIYHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYG  152 (190)
Q Consensus        96 --~~~d~vi~~ag~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~~  152 (190)
                        .++|+||||||......      ..+.++..+++|+.++.++++++..    .+.++|++||...+.
T Consensus       103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~~  171 (297)
T 1xhl_A          103 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGP  171 (297)
T ss_dssp             HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSS
T ss_pred             hcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhcc
Confidence              26999999999654321      1233556899999999999888754    235899999977654

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=99.68  E-value=1.2e-16  Score=123.95  Aligned_cols=122  Identities=16%  Similarity=0.080  Sum_probs=90.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh-hhhh-cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.....+.+ ..+. ...++.++.+|+.|.+.            
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~  104 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAA-GAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERW  104 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999 899988887543222222 2221 23578899999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~~~  152 (190)
                      .++|+||||||......    ..+.++..+++|+.++.++++++.    +.+ .+||++||...+.
T Consensus       105 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  170 (269)
T 4dmm_A          105 GRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEM  170 (269)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcC
Confidence            26999999999765422    223456689999999999988873    334 4999999977543

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=99.68  E-value=1.2e-16  Score=122.71  Aligned_cols=120  Identities=19%  Similarity=0.130  Sum_probs=89.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++++|+.|.+.            .+
T Consensus         4 l~~k~vlVTGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (253)
T 1hxh_A            4 LQGKVALVTGGASGVGLEVVKLLLGE-GAKVAFSDINEAAGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQRRLGT   80 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHc--CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999 899999998654333222222  3478899999998642            25


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCCeEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+.++..+++|+.++.++.+.+    ++.+.++|++||...+.
T Consensus        81 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  143 (253)
T 1hxh_A           81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL  143 (253)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcCCEEEEEcchhhcC
Confidence            899999999754321    22345567999999888777655    33345899999987654

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=99.68  E-value=6.2e-16  Score=119.98  Aligned_cols=113  Identities=21%  Similarity=0.163  Sum_probs=87.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ..+|+++||||+|+||+++++.|+++ |++|++++|+.+...         ..+..+++|++|.+.            .+
T Consensus        12 ~~~k~vlVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (269)
T 3vtz_A           12 FTDKVAIVTGGSSGIGLAVVDALVRY-GAKVVSVSLDEKSDV---------NVSDHFKIDVTNEEEVKEAVEKTTKKYGR   81 (269)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCC--CT---------TSSEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCchhcc---------CceeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            37899999999999999999999999 899999998755431         256788999998642            26


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceecC
Q 029640           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~~  152 (190)
                      +|+||||||.......    .+.++..+++|+.++.++++++..    .+. ++|++||...+.
T Consensus        82 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  145 (269)
T 3vtz_A           82 IDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYA  145 (269)
T ss_dssp             CCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc
Confidence            9999999997653222    223455789999999999887643    344 999999987664

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=99.68  E-value=2.8e-16  Score=121.80  Aligned_cols=111  Identities=22%  Similarity=0.129  Sum_probs=85.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+...          ....+.+|+.+...            .+
T Consensus        26 l~gk~vlVTGas~gIG~aia~~la~~-G~~V~~~~r~~~~~~----------~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   94 (266)
T 3uxy_A           26 FEGKVALVTGAAGGIGGAVVTALRAA-GARVAVADRAVAGIA----------ADLHLPGDLREAAYADGLPGAVAAGLGR   94 (266)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEECSSCCTTSC----------CSEECCCCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHH----------hhhccCcCCCCHHHHHHHHHHHHHhcCC
Confidence            46799999999999999999999999 899999998655432          22445789988632            36


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      +|+||||||......    ..+.++..+++|+.++.++++++    ++.+. ++|++||...+
T Consensus        95 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~  157 (266)
T 3uxy_A           95 LDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGL  157 (266)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTT
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhC
Confidence            999999999765422    22345567899999999999887    44444 99999997654

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=99.68  E-value=2.5e-17  Score=122.45  Aligned_cols=130  Identities=17%  Similarity=0.169  Sum_probs=94.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----C---CcCEEEEc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----I---EVDQIYHL  104 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~---~~d~vi~~  104 (190)
                      |+++||||+|+||+++++.|+++   +|+++.|+..........+ .  . .++.+|+.|...     .   ++|+|||+
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~---~V~~~~r~~~~~~~~~~~~-~--~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH---DLLLSGRRAGALAELAREV-G--A-RALPADLADELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS---EEEEECSCHHHHHHHHHHH-T--C-EECCCCTTSHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC---CEEEEECCHHHHHHHHHhc-c--C-cEEEeeCCCHHHHHHHHHhcCCCCEEEEC
Confidence            57999999999999999999987   8999988643322222212 1  1 788899998642     2   79999999


Q ss_pred             cCCCCCc----ccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhh
Q 029640          105 ACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKD  179 (190)
Q Consensus       105 ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~  179 (190)
                      ||.....    ...+.++..+++|+.++.++++++.+.+. ++|++||...|...                .+...|   
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~~~----------------~~~~~Y---  134 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYVQV----------------PGFAAY---  134 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHSS----------------TTBHHH---
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhccCC----------------CCcchH---
Confidence            9965432    12345667899999999999999966654 89999998877421                122456   


Q ss_pred             hHHHHhhhh
Q 029640          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      +.+|...|.
T Consensus       135 ~~sK~a~~~  143 (207)
T 2yut_A          135 AAAKGALEA  143 (207)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777887764

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=99.68  E-value=4.3e-16  Score=120.63  Aligned_cols=121  Identities=13%  Similarity=0.180  Sum_probs=90.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEeccccccc--------cCCc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL--------LIEV   98 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~--------~~~~   98 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+.   ....+.++.+|+.+..        +.++
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i   86 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAE-GANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV   86 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence            46799999999999999999999999 8999999997554443333332   2346788999999864        2369


Q ss_pred             CEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029640           99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        99 d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                      |+||||||.......    .+.++..+++|+.++.++.+++.    +.+. ++|++||...+
T Consensus        87 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~  148 (267)
T 3t4x_A           87 DILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAI  148 (267)
T ss_dssp             SEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGT
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhc
Confidence            999999997654322    22344569999999888877663    3443 89999997765

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=99.68  E-value=2.7e-16  Score=120.65  Aligned_cols=116  Identities=16%  Similarity=0.123  Sum_probs=87.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCCcCE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVDQ  100 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~d~  100 (190)
                      |+++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++.+|++|.+            +.++|+
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   77 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQ-GHKVIATGRRQERLQELKDEL--GDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDI   77 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCE
T ss_pred             CEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--cCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence            57999999999999999999999 899999998654332222222  246889999999863            126999


Q ss_pred             EEEccCCCC--Ccc---cccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecceec
Q 029640          101 IYHLACPAS--PIF---YKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVY  151 (190)
Q Consensus       101 vi~~ag~~~--~~~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~~  151 (190)
                      ||||||...  ...   ..+.++..+++|+.++.++++++.    +.+ .++|++||...+
T Consensus        78 lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~  138 (248)
T 3asu_A           78 LVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGS  138 (248)
T ss_dssp             EEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGT
T ss_pred             EEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhc
Confidence            999999652  111   223455689999999999888775    344 499999997754

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=99.68  E-value=3.4e-16  Score=121.02  Aligned_cols=120  Identities=18%  Similarity=0.073  Sum_probs=90.3

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~-----------   95 (190)
                      +.+++++||||+  |+||+++++.|+++ |++|++++|+. .....+..+.. .....++.+|++|.+.           
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~-G~~V~~~~r~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHRE-GAELAFTYQND-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV   84 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHT-TCEEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHC-CCEEEEEcCcH-HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHH
Confidence            357899999999  99999999999999 89999999876 33333333321 1234788899998632           


Q ss_pred             -CCcCEEEEccCCCCC-----c----ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceec
Q 029640           96 -IEVDQIYHLACPASP-----I----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~-----~----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~  151 (190)
                       .++|+||||||....     .    ...+.++..+++|+.++.++++++.+.   +.++|++||...+
T Consensus        85 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~  153 (265)
T 1qsg_A           85 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE  153 (265)
T ss_dssp             CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT
T ss_pred             cCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhc
Confidence             268999999997542     1    223345668999999999999999765   2489999997654

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=99.68  E-value=4.5e-16  Score=120.60  Aligned_cols=117  Identities=17%  Similarity=0.136  Sum_probs=88.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+    .+... ....+.++.+|++|.+.            .+
T Consensus        14 ~~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~----~~~~~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   87 (266)
T 3p19_A           14 SMKKLVVITGASSGIGEAIARRFSEE-GHPLLLLARRVE----RLKAL-NLPNTLCAQVDVTDKYTFDTAITRAEKIYGP   87 (266)
T ss_dssp             -CCCEEEEESTTSHHHHHHHHHHHHT-TCCEEEEESCHH----HHHTT-CCTTEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHH----HHHHh-hcCCceEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            36789999999999999999999999 899999988533    22222 13478899999998632            26


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+.++..+++|+.++.++++++.    +.+ .+||++||...+.
T Consensus        88 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~  151 (266)
T 3p19_A           88 ADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKK  151 (266)
T ss_dssp             EEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCC
Confidence            999999999765322    123345679999999999777663    444 4999999977553

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=99.68  E-value=2.5e-16  Score=121.85  Aligned_cols=118  Identities=19%  Similarity=0.129  Sum_probs=87.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc---CCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+..   ..++.++.+|+.|.+.           
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLK-GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH   83 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999 89999999865433222222221   2368899999998642           


Q ss_pred             -CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHH----HHHHcC----CeEEEEecceecC
Q 029640           96 -IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLG----LAKRVG----ARILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~----~~~~~~----~~~i~vSS~~~~~  152 (190)
                       .++|+||||||...    .+.++..+++|+.++.++.+    .+++.+    .++|++||...+.
T Consensus        84 ~g~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  145 (267)
T 2gdz_A           84 FGRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM  145 (267)
T ss_dssp             HSCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS
T ss_pred             cCCCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccC
Confidence             25899999999653    34677889999997766544    444432    3899999987665

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=99.68  E-value=2e-16  Score=118.88  Aligned_cols=102  Identities=17%  Similarity=0.219  Sum_probs=81.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHH-hcCCCeEEEEcCCCC-CChhhhhhhh-cCCceEEEeccccccc-----cCCcCEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLM-ENEKNEVIVVDNYFT-GSKDNLRKWI-GHPRFELIRHDVTEPL-----LIEVDQIY  102 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~-~~~~~~v~~~~r~~~-~~~~~~~~~~-~~~~~~~~~~D~~~~~-----~~~~d~vi  102 (190)
                      ++++|+||||+|+||+++++.|+ +. |++|+++.|+.. ...    .+. ...++.++.+|+.|.+     +.++|+||
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~-g~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv   78 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYT-DMHITLYGRQLKTRIP----PEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVF   78 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHC-CCEEEEEESSHHHHSC----HHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcC-CceEEEEecCccccch----hhccCCCceEEEECCCCCHHHHHHHHcCCCEEE
Confidence            34669999999999999999999 67 899999999644 322    221 2457899999999864     35799999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCC
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD  153 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~  153 (190)
                      |+||..               |+. +.++++++++.+. ++|++||..+|+.
T Consensus        79 ~~ag~~---------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~  114 (221)
T 3r6d_A           79 VGAMES---------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGE  114 (221)
T ss_dssp             ESCCCC---------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSC
T ss_pred             EcCCCC---------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCC
Confidence            999842               333 8899999999886 9999999988874

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=99.68  E-value=1.8e-16  Score=120.79  Aligned_cols=119  Identities=16%  Similarity=0.069  Sum_probs=87.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhh-cCCceEEEecccccccc------------CC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++||||+|+||+++++.|+++ |++|+++ .|+.+........+. ...++.++.+|+.+.+.            .+
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~-G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKA-GCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999999999 8888885 665333222222221 13468889999998642            26


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~  151 (190)
                      +|+|||+||......    ..+.++..+++|+.++.++++.+.+    .+. ++|++||...+
T Consensus        80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~  142 (244)
T 1edo_A           80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGL  142 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHH
T ss_pred             CCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhc
Confidence            999999999765321    2234556899999999999888754    344 99999997654

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=99.68  E-value=1e-15  Score=119.28  Aligned_cols=120  Identities=13%  Similarity=0.031  Sum_probs=90.7

Q ss_pred             cCCCEEEEEcccch--HHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGF--IGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~--iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||+|+  ||+++++.|+++ |++|++++|+.  ..+.+..+. ....+.++.+|+++.+.           
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~-G~~V~~~~r~~--~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  100 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHRE-GAELAFTYVGQ--FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKV  100 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHT-TCEEEEEECTT--CHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHc-CCEEEEeeCch--HHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHH
Confidence            46799999999966  999999999999 89999999876  333333332 22458899999998642           


Q ss_pred             -CCcCEEEEccCCCCCc---------ccccCchhHHHHHHHHHHHHHHHHHHc----CCeEEEEecceecC
Q 029640           96 -IEVDQIYHLACPASPI---------FYKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~vSS~~~~~  152 (190)
                       .++|+||||||.....         ...+.+...+++|+.++.++++++...    +.++|++||...+.
T Consensus       101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~  171 (280)
T 3nrc_A          101 WDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK  171 (280)
T ss_dssp             CSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS
T ss_pred             cCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc
Confidence             3689999999976431         223345568999999999999888543    34899999977553

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.68  E-value=2.6e-16  Score=122.67  Aligned_cols=122  Identities=19%  Similarity=0.070  Sum_probs=89.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC---------Chhhhhh----hh-cCCceEEEecccccccc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG---------SKDNLRK----WI-GHPRFELIRHDVTEPLL   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~---------~~~~~~~----~~-~~~~~~~~~~D~~~~~~   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+...         ....+..    +. ...++.++.+|+.|.+.
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~   91 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAE-GADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA   91 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence            47899999999999999999999999 8999999884221         1122111    11 13578899999998642


Q ss_pred             ------------CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC--CeEEEEecceecC
Q 029640           96 ------------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYG  152 (190)
Q Consensus        96 ------------~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~i~vSS~~~~~  152 (190)
                                  .++|+||||||......    ..+.++..+++|+.++.++++++.    +.+  .++|++||...+.
T Consensus        92 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  170 (280)
T 3pgx_A           92 LRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK  170 (280)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc
Confidence                        36999999999765432    223455678999999999988873    333  3899999977553

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=99.68  E-value=1.4e-16  Score=123.23  Aligned_cols=135  Identities=18%  Similarity=0.070  Sum_probs=89.1

Q ss_pred             CCCCCCchhhcccccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC-CCChhhhhhhh-cCCceEEEecccccc
Q 029640           16 PPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWI-GHPRFELIRHDVTEP   93 (190)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~-~~~~~~~~~~~-~~~~~~~~~~D~~~~   93 (190)
                      .+.++.++.+... +++++++||||+|+||+++++.|+++ |++|+++.++. .........+. ...++.++.+|+.|.
T Consensus        11 ~~~~~~n~~~~~~-l~~k~vlVTGas~gIG~~la~~l~~~-G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~   88 (267)
T 4iiu_A           11 VDLGTENLYFQSN-AMSRSVLVTGASKGIGRAIARQLAAD-GFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANR   88 (267)
T ss_dssp             ---------------CCCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCH
T ss_pred             cccCChhhhhccc-cCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCH
Confidence            3444444443333 36789999999999999999999999 88886655433 22222222222 235789999999986


Q ss_pred             cc------------CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH-----HcCC-eEEEEecceec
Q 029640           94 LL------------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK-----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        94 ~~------------~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~-~~i~vSS~~~~  151 (190)
                      +.            .++|+||||||......    ..+.++..+++|+.++.++++.+.     +.+. ++|++||...+
T Consensus        89 ~~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~  168 (267)
T 4iiu_A           89 EQCREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGV  168 (267)
T ss_dssp             HHHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHH
T ss_pred             HHHHHHHHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhc
Confidence            42            26999999999765432    233456689999999999988773     3344 99999997754


Q ss_pred             C
Q 029640          152 G  152 (190)
Q Consensus       152 ~  152 (190)
                      .
T Consensus       169 ~  169 (267)
T 4iiu_A          169 M  169 (267)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=99.68  E-value=1.2e-16  Score=124.21  Aligned_cols=122  Identities=14%  Similarity=0.026  Sum_probs=92.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+. ...++.++.+|+.|...            .
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARR-GAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFG  104 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999 8999999986544333222221 13467889999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~~~  152 (190)
                      ++|+||||||......    ..+.++..+++|+.++.++++++..    .+ .+||++||...+.
T Consensus       105 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  169 (270)
T 3ftp_A          105 ALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSA  169 (270)
T ss_dssp             CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC
Confidence            6999999999765422    2334566899999999999988742    33 3899999977553

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=99.68  E-value=3.7e-16  Score=119.19  Aligned_cols=113  Identities=19%  Similarity=0.100  Sum_probs=87.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------------   95 (190)
                      .++++++||||+|+||+++++.|+++ |++|++++|+.+...         ....++.+|+.|.+.              
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~~~~~~~   74 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRAR-NWWVASIDVVENEEA---------SASVIVKMTDSFTEQADQVTAEVGKLLGD   74 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSCCTTS---------SEEEECCCCSCHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhC-CCEEEEEeCChhhcc---------CCcEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            36789999999999999999999999 899999999765432         135677899998631              


Q ss_pred             CCcCEEEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~  152 (190)
                      .++|+||||||.....     ...+.++..+++|+.++.++++++...   +.++|++||...+.
T Consensus        75 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  139 (241)
T 1dhr_A           75 QKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD  139 (241)
T ss_dssp             CCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS
T ss_pred             CCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHcc
Confidence            3799999999965422     122345567999999999999988664   24899999977654

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=99.68  E-value=1.9e-16  Score=120.64  Aligned_cols=119  Identities=12%  Similarity=0.056  Sum_probs=84.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhhc-CCceEE-Eecccccccc------------C
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIG-HPRFEL-IRHDVTEPLL------------I   96 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~-~~~~~~-~~~D~~~~~~------------~   96 (190)
                      |++++||||+|+||+++++.|+++ |++|+++ .|+.+........+.. ...+.. +.+|+.|...            .
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~-G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAED-GFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG   79 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTT-TCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence            478999999999999999999999 8899888 6754332222222211 235566 8899998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      ++|+|||+||......    ..+.++..+++|+.++.++++.+    ++.+. ++|++||...+
T Consensus        80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~  143 (245)
T 2ph3_A           80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGI  143 (245)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHH
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhc
Confidence            6999999999654321    22345567999999966665544    45565 99999997644

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=1.5e-16  Score=122.12  Aligned_cols=121  Identities=15%  Similarity=0.070  Sum_probs=89.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh----cCCceEEEecccccccc----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----GHPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~----------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.    ...++.++.+|++|.+.          
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATD-GYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHH-TCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999999 8999999997554433333321    12578899999998642          


Q ss_pred             --CCcCEEEEccCCCCCcc---cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029640           96 --IEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        96 --~~~d~vi~~ag~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                        .++|+||||||......   ..+.++..+++|+.++.++++++.    +.+. ++|++||...+
T Consensus        84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~  149 (250)
T 3nyw_A           84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAK  149 (250)
T ss_dssp             HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC----
T ss_pred             hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhc
Confidence              36999999999754322   223455689999999999988873    3444 89999997644

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=99.67  E-value=5e-16  Score=119.48  Aligned_cols=121  Identities=16%  Similarity=0.120  Sum_probs=93.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++|+++||||++.||+++++.|+++ |.+|.+.+|+.+.......++.. ..++.++++|++|++.            .
T Consensus         5 L~gKvalVTGas~GIG~aiA~~la~~-Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   83 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGIGRAIAKKFALN-DSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYS   83 (254)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            58999999999999999999999999 89999999976554444444432 3578999999999742            3


Q ss_pred             CcCEEEEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029640           97 EVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                      ++|++|||||.....  .   +.+.++..+++|+.+++++.+++.    +++. ++|++||...+
T Consensus        84 ~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~  148 (254)
T 4fn4_A           84 RIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGI  148 (254)
T ss_dssp             CCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhc
Confidence            699999999965421  2   233466789999999998887763    3444 99999996643

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=99.67  E-value=2.8e-16  Score=122.92  Aligned_cols=122  Identities=17%  Similarity=0.100  Sum_probs=89.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC-CCChhhhhhhh--cCCceEEEeccccc----cc--------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWI--GHPRFELIRHDVTE----PL--------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~-~~~~~~~~~~~--~~~~~~~~~~D~~~----~~--------   94 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+. +........+.  ...++.++.+|+.+    ..        
T Consensus        21 l~~k~~lVTGas~gIG~aia~~L~~~-G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~   99 (288)
T 2x9g_A           21 MEAPAAVVTGAAKRIGRAIAVKLHQT-GYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINS   99 (288)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHH-TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHH
Confidence            47899999999999999999999999 89999999875 33222222221  23578899999999    43        


Q ss_pred             ----cCCcCEEEEccCCCCCcc--------------cccCchhHHHHHHHHHHHHHHHHHHc----C------C-eEEEE
Q 029640           95 ----LIEVDQIYHLACPASPIF--------------YKYNPVKTIKTNVIGTLNMLGLAKRV----G------A-RILLT  145 (190)
Q Consensus        95 ----~~~~d~vi~~ag~~~~~~--------------~~~~~~~~~~~n~~~~~~l~~~~~~~----~------~-~~i~v  145 (190)
                          +.++|+||||||......              ..+.++..+++|+.++.++++.+...    +      . ++|++
T Consensus       100 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~i  179 (288)
T 2x9g_A          100 CFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNL  179 (288)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEEE
T ss_pred             HHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEE
Confidence                126999999999654321              12234467899999999998887532    2      3 89999


Q ss_pred             ecceecC
Q 029640          146 STSEVYG  152 (190)
Q Consensus       146 SS~~~~~  152 (190)
                      ||...+.
T Consensus       180 sS~~~~~  186 (288)
T 2x9g_A          180 CDAMVDQ  186 (288)
T ss_dssp             CCTTTTS
T ss_pred             ecccccC
Confidence            9976543

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=99.67  E-value=2.7e-16  Score=121.16  Aligned_cols=119  Identities=15%  Similarity=0.084  Sum_probs=89.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+  ...+.++.+|+.|...            .+
T Consensus         7 l~~k~vlITGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   83 (261)
T 3n74_A            7 LEGKVALITGAGSGFGEGMAKRFAKG-GAKVVIVDRDKAGAERVAGEI--GDAALAVAADISKEADVDAAVEAALSKFGK   83 (261)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            46799999999999999999999999 899999999755433333322  3478999999998642            26


Q ss_pred             cCEEEEccCCCCCcc-----cccCchhHHHHHHHHHHHHHHHHHHc---------CCeEEEEecceec
Q 029640           98 VDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV---------GARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~~i~vSS~~~~  151 (190)
                      +|+||||||......     ..+.++..+++|+.++.++++.+...         ..++|++||...+
T Consensus        84 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~  151 (261)
T 3n74_A           84 VDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAG  151 (261)
T ss_dssp             CCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTT
T ss_pred             CCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhc
Confidence            999999999764211     22345567999999999888877432         2269999996644

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=99.67  E-value=4.4e-16  Score=121.06  Aligned_cols=119  Identities=13%  Similarity=0.038  Sum_probs=87.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCcCE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVDQ  100 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~d~  100 (190)
                      ++++||||+|+||+++++.|+++ |++|++++|+.+........+....++.++.+|+.|.+.            .++|+
T Consensus        22 k~vlVTGas~gIG~aia~~La~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  100 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEA-GWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRG  100 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCE
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCE
Confidence            89999999999999999999999 899999998654333322222222478899999998632            35899


Q ss_pred             EEEccCCCCC--cc---cccCchhHHHHHHHHHHHHHHHHH----HcC-C-eEEEEecceecC
Q 029640          101 IYHLACPASP--IF---YKYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVYG  152 (190)
Q Consensus       101 vi~~ag~~~~--~~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~-~~i~vSS~~~~~  152 (190)
                      ||||||....  ..   ..+.++..+++|+.++.++++.+.    +.+ . ++|++||...+.
T Consensus       101 lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~  163 (272)
T 2nwq_A          101 LINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKW  163 (272)
T ss_dssp             EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTS
T ss_pred             EEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhcc
Confidence            9999997542  11   123455679999999888877663    333 5 999999977553

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=99.67  E-value=5.9e-16  Score=120.90  Aligned_cols=120  Identities=13%  Similarity=0.018  Sum_probs=89.9

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~-----------   95 (190)
                      +.+++++||||+  |+||+++++.|+++ |++|++++|+.+ ....+..+.. ...+.++.+|+.|.+.           
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~-G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   96 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHRE-GAQLAFTYATPK-LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEEN   96 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHT-TCEEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHc-CCEEEEEeCCHH-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            467899999999  99999999999999 899999998753 2223333321 1246788999998642           


Q ss_pred             -CCcCEEEEccCCCCC--------cccccCchhHHHHHHHHHHHHHHHHHHc----CCeEEEEecceec
Q 029640           96 -IEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~vSS~~~~  151 (190)
                       .++|+||||||....        ....+.++..+++|+.++.++++++...    +.++|++||...+
T Consensus        97 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~  165 (285)
T 2p91_A           97 WGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAE  165 (285)
T ss_dssp             TSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGT
T ss_pred             cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhc
Confidence             369999999997542        1122345568999999999999998654    2489999997654

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=99.67  E-value=3.6e-16  Score=122.12  Aligned_cols=122  Identities=20%  Similarity=0.098  Sum_probs=90.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC------------Chhhhhhh----h-cCCceEEEeccccc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG------------SKDNLRKW----I-GHPRFELIRHDVTE   92 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~------------~~~~~~~~----~-~~~~~~~~~~D~~~   92 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+.            ..+.+...    . ...++.++++|++|
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~   87 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLAQE-GADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRD   87 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence            47899999999999999999999999 8999999886321            12222211    1 23578999999998


Q ss_pred             ccc------------CCcCEEEEccCCCCCcc-----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecce
Q 029640           93 PLL------------IEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSE  149 (190)
Q Consensus        93 ~~~------------~~~d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~  149 (190)
                      .+.            .++|+||||||......     ..+.++..+++|+.++.++++++..    .+  .+||++||..
T Consensus        88 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~  167 (286)
T 3uve_A           88 YDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVG  167 (286)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchh
Confidence            642            26999999999755422     2334556899999999999887743    23  3899999977


Q ss_pred             ecC
Q 029640          150 VYG  152 (190)
Q Consensus       150 ~~~  152 (190)
                      .+.
T Consensus       168 ~~~  170 (286)
T 3uve_A          168 GLK  170 (286)
T ss_dssp             GTS
T ss_pred             hcc
Confidence            553

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.67  E-value=1.3e-15  Score=116.51  Aligned_cols=115  Identities=17%  Similarity=0.185  Sum_probs=86.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+.......    ..++.++.+|+.|.+.            .+
T Consensus         3 l~~k~vlVTGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   77 (245)
T 1uls_A            3 LKDKAVLITGAAHGIGRATLELFAKE-GARLVACDIEEGPLREAAE----AVGAHPVVMDVADPASVERGFAEALAHLGR   77 (245)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----TTTCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----HcCCEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            36789999999999999999999999 8999999886433222211    1137888999998642            25


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc----CC-eEEEEecce
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSE  149 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~vSS~~  149 (190)
                      +|+||||||......    ..+.++..+++|+.++.++.+++.+.    +. ++|++||..
T Consensus        78 id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~  138 (245)
T 1uls_A           78 LDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV  138 (245)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch
Confidence            999999999654321    12335567899999999998887543    44 899999977

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=99.67  E-value=3.3e-16  Score=120.53  Aligned_cols=122  Identities=21%  Similarity=0.077  Sum_probs=94.0

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------c
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------L   95 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~   95 (190)
                      .++||+++||||++.||+++++.|+++ |.+|.+.+|+.+...+...++.. ..++..+++|++|++            +
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~-Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAA-GARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            368999999999999999999999999 89999999976554444444432 357889999999974            3


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----H-cC-CeEEEEecceec
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----R-VG-ARILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~-~~-~~~i~vSS~~~~  151 (190)
                      .++|++|||||......    ..+.++..+++|+.+++.+.+++.    + .+ .++|++||...+
T Consensus        85 G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~  150 (255)
T 4g81_D           85 IHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQ  150 (255)
T ss_dssp             CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhc
Confidence            46999999999765432    223456679999999999887663    2 23 399999997644

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=99.67  E-value=2.1e-16  Score=123.30  Aligned_cols=120  Identities=17%  Similarity=0.105  Sum_probs=84.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC-Chhhhhhhh-cCCceEEEecccccccc------------C
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~-~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      .+++++||||+|+||+++++.|+++ |++|++++|+... .......+. ...++.++++|+.|.+.            .
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  106 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAAS-GFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG  106 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5689999999999999999999999 8999998864332 222222222 23578999999999753            2


Q ss_pred             CcCEEEEccCCCC--C-cc---cccCchhHHHHHHHHHHHHHHHHHHc----C---C-eEEEEecceec
Q 029640           97 EVDQIYHLACPAS--P-IF---YKYNPVKTIKTNVIGTLNMLGLAKRV----G---A-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~--~-~~---~~~~~~~~~~~n~~~~~~l~~~~~~~----~---~-~~i~vSS~~~~  151 (190)
                      ++|+||||||...  . ..   ..+.++..+++|+.++.++++++...    +   . ++|++||...+
T Consensus       107 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~  175 (280)
T 4da9_A          107 RIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAV  175 (280)
T ss_dssp             CCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC---
T ss_pred             CCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhc
Confidence            6999999999732  1 11   23345567899999999988877432    2   3 89999997755

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=99.67  E-value=1.9e-16  Score=123.69  Aligned_cols=121  Identities=16%  Similarity=0.084  Sum_probs=87.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+.  ....+.++++|++|.+.            
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  109 (281)
T 4dry_A           31 GEGRIALVTGGGTGVGRGIAQALSAE-GYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEF  109 (281)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            47899999999999999999999999 8999999997554333332221  12346889999998742            


Q ss_pred             CCcCEEEEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHHH----HcC---CeEEEEecceec
Q 029640           96 IEVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAK----RVG---ARILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~---~~~i~vSS~~~~  151 (190)
                      .++|+||||||.....  .   ..+.++..+++|+.++.++.+++.    +.+   .++|++||...+
T Consensus       110 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~  177 (281)
T 4dry_A          110 ARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQ  177 (281)
T ss_dssp             SCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGT
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhC
Confidence            3689999999975431  1   223455689999999988877764    332   389999997654

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=99.67  E-value=2.9e-16  Score=123.49  Aligned_cols=119  Identities=18%  Similarity=0.147  Sum_probs=89.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh------cCCceEEEecccccccc--------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI------GHPRFELIRHDVTEPLL--------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~--------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.      ...++.++.+|+.+.+.        
T Consensus        16 l~~k~vlVTGasggIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   94 (303)
T 1yxm_A           16 LQGQVAIVTGGATGIGKAIVKELLEL-GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   94 (303)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHH
Confidence            47799999999999999999999999 8999999986543332222222      13578999999998642        


Q ss_pred             ----CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc-----CCeEEEEecce
Q 029640           96 ----IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-----GARILLTSTSE  149 (190)
Q Consensus        96 ----~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~-----~~~~i~vSS~~  149 (190)
                          .++|+||||||......    ..+.++..+++|+.++.++++++...     +.++|++||..
T Consensus        95 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~  161 (303)
T 1yxm_A           95 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT  161 (303)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC
T ss_pred             HHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec
Confidence                25999999999654221    12334567999999999999987552     34899999976

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=99.67  E-value=3.9e-16  Score=122.53  Aligned_cols=121  Identities=17%  Similarity=0.039  Sum_probs=90.2

Q ss_pred             cCCCEEEEEcccch--HHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGF--IGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~--iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||+|+  ||+++++.|+++ |++|++++|+... .+.+..+. ...++.++.+|++|.+.           
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~-G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREA-GAELAFTYQGDAL-KKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKK  106 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHT-TCEEEEEECSHHH-HHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHC-CCEEEEEcCCHHH-HHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHh
Confidence            57899999999987  999999999999 8999999886321 12222221 12368899999998642           


Q ss_pred             -CCcCEEEEccCCCCC-----c---ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecC
Q 029640           96 -IEVDQIYHLACPASP-----I---FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~-----~---~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~  152 (190)
                       .++|+||||||....     .   ...+.++..+++|+.++.++++++...   +.++|++||...+.
T Consensus       107 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~  175 (293)
T 3grk_A          107 WGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK  175 (293)
T ss_dssp             TSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS
T ss_pred             cCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc
Confidence             369999999997641     1   123345568999999999999988653   23899999977554

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=99.67  E-value=3.4e-16  Score=121.77  Aligned_cols=122  Identities=21%  Similarity=0.131  Sum_probs=90.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC---------Chhhhhh----h-hcCCceEEEecccccccc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG---------SKDNLRK----W-IGHPRFELIRHDVTEPLL   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~---------~~~~~~~----~-~~~~~~~~~~~D~~~~~~   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+.         ....+..    + ....++.++.+|+.|.+.
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   87 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAE-GADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDR   87 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence            47899999999999999999999999 8999999884221         1222211    1 123578999999998642


Q ss_pred             ------------CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC--CeEEEEecceecC
Q 029640           96 ------------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYG  152 (190)
Q Consensus        96 ------------~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~i~vSS~~~~~  152 (190)
                                  .++|+||||||......    ..+.++..+++|+.++.++++++.    +.+  .+||++||...+.
T Consensus        88 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~  166 (277)
T 3tsc_A           88 LRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK  166 (277)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC
Confidence                        36999999999765422    233456679999999999988763    333  3899999977553

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=99.67  E-value=6.3e-16  Score=117.76  Aligned_cols=114  Identities=15%  Similarity=0.122  Sum_probs=86.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----------cCCcCE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----------LIEVDQ  100 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----------~~~~d~  100 (190)
                      +|+++||||+|+||+++++.|+++ |++|++++|+.+.   ....+    .+.++.+|+.+..           +.++|+
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~-G~~V~~~~r~~~~---~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~g~id~   73 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVAR-GYRVAIASRNPEE---AAQSL----GAVPLPTDLEKDDPKGLVKRALEALGGLHV   73 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCHH---HHHHH----TCEEEECCTTTSCHHHHHHHHHHHHTSCCE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHH---HHHhh----CcEEEecCCchHHHHHHHHHHHHHcCCCCE
Confidence            588999999999999999999999 8999999986543   12222    2778899999821           126999


Q ss_pred             EEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecCC
Q 029640          101 IYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGD  153 (190)
Q Consensus       101 vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~~  153 (190)
                      ||||||......    ..+.++..+++|+.++.++++++.    +.+. ++|++||...+..
T Consensus        74 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~  135 (239)
T 2ekp_A           74 LVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTA  135 (239)
T ss_dssp             EEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSC
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccC
Confidence            999999654321    223456789999999999988773    3454 9999999877653

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.67  E-value=6.6e-16  Score=118.63  Aligned_cols=120  Identities=20%  Similarity=0.098  Sum_probs=88.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhh-cCCceEEEecccccccc------------C
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      .+++++||||+|+||+++++.|+++ |++|++.+++.... ......+. ...++.++.+|+.|.+.            .
T Consensus        12 ~~k~vlITGas~giG~~ia~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   90 (256)
T 3ezl_A           12 SQRIAYVTGGMGGIGTSICQRLHKD-GFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEVG   90 (256)
T ss_dssp             -CEEEEETTTTSHHHHHHHHHHHHT-TEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHhcC
Confidence            6799999999999999999999999 88888887443333 33222222 23578899999998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      ++|+||||||......    ..+.++..+++|+.++.++++.+    ++.+. ++|++||...+
T Consensus        91 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~  154 (256)
T 3ezl_A           91 EIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQ  154 (256)
T ss_dssp             CEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGG
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhc
Confidence            6999999999765321    22345568999999988887766    34454 89999997654

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=99.67  E-value=4.4e-16  Score=118.96  Aligned_cols=121  Identities=19%  Similarity=0.163  Sum_probs=88.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEeccc--cccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDV--TEPL-----------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~--~~~~-----------   94 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+..........+..  .....++.+|+  .+..           
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~   90 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAH-GASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH   90 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999 89999999975544333333221  24566677766  6542           


Q ss_pred             -cCCcCEEEEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029640           95 -LIEVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        95 -~~~~d~vi~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                       +.++|+||||||.....  .   ..+.++..+++|+.++.++++++.    +.+. ++|++||...+
T Consensus        91 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~  158 (247)
T 3i1j_A           91 EFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGR  158 (247)
T ss_dssp             HHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGT
T ss_pred             hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhc
Confidence             13699999999975321  1   223455679999999999998883    3444 89999997654

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=99.67  E-value=7.1e-16  Score=118.15  Aligned_cols=117  Identities=21%  Similarity=0.314  Sum_probs=89.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCCc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~   98 (190)
                      ++|+|+||||++.||+++++.|+++ |++|.+.+|+.+...+...   ...++.++++|++|+.            +.++
T Consensus         1 MnK~vlVTGas~GIG~aia~~la~~-Ga~V~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i   76 (247)
T 3ged_A            1 MNRGVIVTGGGHGIGKQICLDFLEA-GDKVCFIDIDEKRSADFAK---ERPNLFYFHGDVADPLTLKKFVEYAMEKLQRI   76 (247)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHT---TCTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH---hcCCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            3589999999999999999999999 8999999986443322211   2357889999999864            2369


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCCeEEEEecceec
Q 029640           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVY  151 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~vSS~~~~  151 (190)
                      |++|||||......    ..+.++..+++|+.++..+.+++.    +.+.++|++||...+
T Consensus        77 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~  137 (247)
T 3ged_A           77 DVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAF  137 (247)
T ss_dssp             CEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGT
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccc
Confidence            99999999665432    223456679999999998887774    334599999997644

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=99.67  E-value=2.9e-16  Score=120.87  Aligned_cols=116  Identities=23%  Similarity=0.284  Sum_probs=86.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----------CCc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----------IEV   98 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----------~~~   98 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+   .....+  ..++.++++|+.|.+.           .++
T Consensus         7 l~~k~vlVTGas~gIG~aia~~l~~~-G~~V~~~~r~~~---~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~g~i   80 (257)
T 3tl3_A            7 IRDAVAVVTGGASGLGLATTKRLLDA-GAQVVVLDIRGE---DVVADL--GDRARFAAADVTDEAAVASALDLAETMGTL   80 (257)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHH-TCEEEEEESSCH---HHHHHT--CTTEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             ecCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCchH---HHHHhc--CCceEEEECCCCCHHHHHHHHHHHHHhCCC
Confidence            46799999999999999999999999 899999988432   222222  3578999999998642           279


Q ss_pred             CEEEEccCCCCCc--------ccccCchhHHHHHHHHHHHHHHHHHHc------------CC-eEEEEecceec
Q 029640           99 DQIYHLACPASPI--------FYKYNPVKTIKTNVIGTLNMLGLAKRV------------GA-RILLTSTSEVY  151 (190)
Q Consensus        99 d~vi~~ag~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~------------~~-~~i~vSS~~~~  151 (190)
                      |+||||||.....        ...+.++..+++|+.++.++++++...            +. ++|++||...+
T Consensus        81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  154 (257)
T 3tl3_A           81 RIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAF  154 (257)
T ss_dssp             EEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--
T ss_pred             CEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhc
Confidence            9999999965321        223446678999999999999888542            22 89999997654

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=99.67  E-value=6.8e-16  Score=121.22  Aligned_cols=122  Identities=19%  Similarity=0.157  Sum_probs=91.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC-Chhhhhhhh--cCCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWI--GHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~-~~~~~~~~~--~~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+... ....+....  ...++.++.+|+.|.+.           
T Consensus        47 l~~k~vlVTGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  125 (294)
T 3r3s_A           47 LKDRKALVTGGDSGIGRAAAIAYARE-GADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREA  125 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999999999 8999998875321 111221111  23578899999998642           


Q ss_pred             -CCcCEEEEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHHHHcC---CeEEEEecceecC
Q 029640           96 -IEVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~vSS~~~~~  152 (190)
                       .++|+||||||.....  .   ..+.++..+++|+.++.++++++...-   .+||++||...+.
T Consensus       126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~  191 (294)
T 3r3s_A          126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQ  191 (294)
T ss_dssp             HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTS
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhcc
Confidence             3699999999965421  1   223456789999999999999997652   3899999987665

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=99.66  E-value=2.3e-16  Score=119.47  Aligned_cols=118  Identities=10%  Similarity=0.029  Sum_probs=87.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc---------CCcCEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL---------IEVDQIY  102 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---------~~~d~vi  102 (190)
                      ||+++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++.+|+.+.+.         ...|+||
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv   77 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDAE-GKATYLTGRSESKLSTVTNCL--SNNVGYRARDLASHQEVEQLFEQLDSIPSTVV   77 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHHTC--SSCCCEEECCTTCHHHHHHHHHSCSSCCSEEE
T ss_pred             CCEEEEecCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHH--hhccCeEeecCCCHHHHHHHHHHHhhcCCEEE
Confidence            468999999999999999999999 889999999654433333222  3467889999998642         1259999


Q ss_pred             EccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc----CCeEEEEecceecC
Q 029640          103 HLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYG  152 (190)
Q Consensus       103 ~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~vSS~~~~~  152 (190)
                      ||||......    ..+..+..+++|+.++.++++.+...    +.++|++||...+.
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~  135 (230)
T 3guy_A           78 HSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ  135 (230)
T ss_dssp             ECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS
T ss_pred             EeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC
Confidence            9999655322    12334567999999999999887543    33899999977653

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=99.66  E-value=1e-16  Score=123.78  Aligned_cols=121  Identities=19%  Similarity=0.126  Sum_probs=92.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHh-cCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~-~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      ++++++||||+|+||+++++.|++ . |++|+++.|+..........+.. ..++.++.+|+.+...            .
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLF-SGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG   81 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHS-SSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhc-CCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            678999999999999999999999 7 88999999865433332233221 2468899999998632            2


Q ss_pred             CcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHHcC---CeEEEEecceecC
Q 029640           97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~vSS~~~~~  152 (190)
                      ++|+||||||.......    .+..+..+++|+.++.++++++.+.-   .++|++||...+.
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~  144 (276)
T 1wma_A           82 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVR  144 (276)
T ss_dssp             SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHH
T ss_pred             CCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhc
Confidence            69999999996643222    23455679999999999999997752   3899999987663

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=99.66  E-value=4.8e-16  Score=122.19  Aligned_cols=120  Identities=12%  Similarity=-0.033  Sum_probs=90.5

Q ss_pred             cCCCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh-hcCCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW-IGHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||+|  +||+++++.|+++ |++|++++|+.+.. ..+..+ .....+.++++|++|.+.           
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~-G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQ-GAEVALTYLSETFK-KRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESSGGGH-HHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHC-CCEEEEEeCChHHH-HHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            4689999999997  9999999999999 89999999874322 222222 112356889999998642           


Q ss_pred             -CCcCEEEEccCCCCC--------cccccCchhHHHHHHHHHHHHHHHHHHcC---CeEEEEecceec
Q 029640           96 -IEVDQIYHLACPASP--------IFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~--------~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~vSS~~~~  151 (190)
                       .++|+||||||....        ....+.+...+++|+.++.++++++...-   .++|++||...+
T Consensus       106 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~  173 (296)
T 3k31_A          106 WGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAE  173 (296)
T ss_dssp             HSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGT
T ss_pred             cCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhc
Confidence             369999999997642        11233456789999999999999987642   389999997754

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=99.66  E-value=5.3e-16  Score=121.19  Aligned_cols=122  Identities=14%  Similarity=0.121  Sum_probs=89.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~------------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.  ....+.++.+|++|.+.            
T Consensus        26 ~~~k~vlITGasggIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  104 (286)
T 1xu9_A           26 LQGKKVIVTGASKGIGREMAYHLAKM-GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM  104 (286)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            57899999999999999999999999 8999999986543332222221  22368899999998632            


Q ss_pred             CCcCEEEEc-cCCCCCccc---ccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceecC
Q 029640           96 IEVDQIYHL-ACPASPIFY---KYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~-ag~~~~~~~---~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~~  152 (190)
                      .++|+|||| ||.......   .+..+..+++|+.++.++++++..    .+.++|++||...+.
T Consensus       105 g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~  169 (286)
T 1xu9_A          105 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV  169 (286)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS
T ss_pred             CCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCccccc
Confidence            269999999 565433221   223456799999999999887743    335999999976543

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=99.66  E-value=3.8e-16  Score=121.18  Aligned_cols=122  Identities=12%  Similarity=0.032  Sum_probs=91.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.....+.+....  ...++.++.+|+.+...            
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~  105 (271)
T 4iin_A           27 FTGKNVLITGASKGIGAEIAKTLASM-GLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSD  105 (271)
T ss_dssp             CSCCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            47799999999999999999999999 8999999886443333222221  23578999999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      .++|+||||||......    ..+..+..+++|+.++.++++.+.    +.+. ++|++||...+.
T Consensus       106 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  171 (271)
T 4iin_A          106 GGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGER  171 (271)
T ss_dssp             SSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH
T ss_pred             CCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcC
Confidence            36999999999765432    223455679999999998887764    3344 899999977543

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=99.66  E-value=2.8e-16  Score=121.19  Aligned_cols=121  Identities=15%  Similarity=0.038  Sum_probs=90.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC-Chhhhhhhhc-CCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIG-HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~-~~~~~~~~~~-~~~~~~~~~D~~~~~~------------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.++... .......+.. ..++.++.+|++|.+.            
T Consensus         6 l~~k~vlVTGas~GIG~aia~~la~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (259)
T 3edm_A            6 FTNRTIVVAGAGRDIGRACAIRFAQE-GANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF   84 (259)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999 8899888444332 2222222221 3478899999998642            


Q ss_pred             CCcCEEEEccCCCCCcc-----cccCchhHHHHHHHHHHHHHHHHHHcC---CeEEEEecceec
Q 029640           96 IEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~vSS~~~~  151 (190)
                      .++|+||||||......     ..+.++..+++|+.++.++++++...-   .++|++||...+
T Consensus        85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~  148 (259)
T 3edm_A           85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGR  148 (259)
T ss_dssp             CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHH
T ss_pred             CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhc
Confidence            26999999998652211     123345679999999999999997652   389999998766

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=99.66  E-value=7.9e-16  Score=122.67  Aligned_cols=122  Identities=12%  Similarity=0.035  Sum_probs=89.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEc-CCCCCChhhhhhhh--cCCceEEEeccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD-NYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~-r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~------------   94 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++ |+.+........+.  ...++.++.+|+.+..            
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~-G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~  122 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAE-GYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP  122 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CC
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhccccccccccc
Confidence            46789999999999999999999999 89999998 75443332222221  1347889999999876            


Q ss_pred             -----c------------CCcCEEEEccCCCCCccc------------------ccCchhHHHHHHHHHHHHHHHHH---
Q 029640           95 -----L------------IEVDQIYHLACPASPIFY------------------KYNPVKTIKTNVIGTLNMLGLAK---  136 (190)
Q Consensus        95 -----~------------~~~d~vi~~ag~~~~~~~------------------~~~~~~~~~~n~~~~~~l~~~~~---  136 (190)
                           .            .++|+||||||.......                  .+.++..+++|+.++.++++++.   
T Consensus       123 ~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m  202 (328)
T 2qhx_A          123 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV  202 (328)
T ss_dssp             BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 2            169999999996543211                  22344679999999999988774   


Q ss_pred             -HcC------C-eEEEEecceecC
Q 029640          137 -RVG------A-RILLTSTSEVYG  152 (190)
Q Consensus       137 -~~~------~-~~i~vSS~~~~~  152 (190)
                       +.+      . +||++||...+.
T Consensus       203 ~~~~~~~~~~~g~IV~isS~~~~~  226 (328)
T 2qhx_A          203 AGTPAKHRGTNYSIINMVDAMTNQ  226 (328)
T ss_dssp             HHSCGGGSCSCEEEEEECCTTTTS
T ss_pred             HhcCCcCCCCCcEEEEECchhhcc
Confidence             333      3 899999976543

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=99.66  E-value=2.2e-15  Score=116.20  Aligned_cols=121  Identities=18%  Similarity=0.163  Sum_probs=92.7

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh-hcCCceEEEeccccccc------------c
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW-IGHPRFELIRHDVTEPL------------L   95 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~------------~   95 (190)
                      .+++|+++||||++.||+++++.|+++ |..|.+.+|+.+... ....+ ....++.++.+|++|+.            +
T Consensus         4 ~L~gKvalVTGas~GIG~aia~~la~~-Ga~Vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~   81 (258)
T 4gkb_A            4 NLQDKVVIVTGGASGIGGAISMRLAEE-RAIPVVFARHAPDGA-FLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATF   81 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCCHH-HHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCcccHH-HHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHh
Confidence            368999999999999999999999999 899999999766533 22222 22457899999999864            2


Q ss_pred             CCcCEEEEccCCCCCcc---cccCchhHHHHHHHHHHHHHHHHH----HcCCeEEEEecceec
Q 029640           96 IEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~vSS~~~~  151 (190)
                      .++|++|||||......   ..+.+...+++|+.++.++.+++.    +.+.++|++||...+
T Consensus        82 G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~  144 (258)
T 4gkb_A           82 GRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAV  144 (258)
T ss_dssp             SCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHH
T ss_pred             CCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhc
Confidence            36999999999654322   223455679999999998887763    334599999997754

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=99.66  E-value=1.1e-15  Score=119.81  Aligned_cols=122  Identities=12%  Similarity=0.022  Sum_probs=89.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEc-CCCCCChhhhhhhh--cCCceEEEeccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD-NYFTGSKDNLRKWI--GHPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~-r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~------------   94 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++ |+.+........+.  ...++.++++|+.+..            
T Consensus         7 l~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (291)
T 1e7w_A            7 PTVPVALVTGAAKRLGRSIAEGLHAE-GYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAP   85 (291)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccccc
Confidence            46789999999999999999999999 89999998 76443332222221  1347899999999876            


Q ss_pred             -----c------------CCcCEEEEccCCCCCcc----c--------------ccCchhHHHHHHHHHHHHHHHHH---
Q 029640           95 -----L------------IEVDQIYHLACPASPIF----Y--------------KYNPVKTIKTNVIGTLNMLGLAK---  136 (190)
Q Consensus        95 -----~------------~~~d~vi~~ag~~~~~~----~--------------~~~~~~~~~~n~~~~~~l~~~~~---  136 (190)
                           .            .++|+||||||......    .              .+..+..+++|+.++.++++++.   
T Consensus        86 ~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m  165 (291)
T 1e7w_A           86 VTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRV  165 (291)
T ss_dssp             BCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence                 2            16999999999654321    1              22345679999999999988774   


Q ss_pred             -HcC-------CeEEEEecceecC
Q 029640          137 -RVG-------ARILLTSTSEVYG  152 (190)
Q Consensus       137 -~~~-------~~~i~vSS~~~~~  152 (190)
                       +.+       .+||++||...+.
T Consensus       166 ~~~~~~~~~~~g~Iv~isS~~~~~  189 (291)
T 1e7w_A          166 AGTPAKHRGTNYSIINMVDAMTNQ  189 (291)
T ss_dssp             HTSCGGGSCSCEEEEEECCTTTTS
T ss_pred             HhcCCCCCCCCcEEEEEechhhcC
Confidence             333       3899999976543

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=99.65  E-value=1.1e-15  Score=118.09  Aligned_cols=121  Identities=13%  Similarity=0.009  Sum_probs=90.9

Q ss_pred             cCCCEEEEEcccch--HHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc---------
Q 029640           30 QSNMRILVTGGAGF--IGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL---------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~--iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~---------   95 (190)
                      +++++++||||+|+  ||+++++.|+++ |++|++++|+... ...+.++.   ...++.++.+|++|...         
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~-G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   82 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEA-GARLIFTYAGERL-EKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIK   82 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHT-TCEEEEEESSGGG-HHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHC-CCEEEEecCchHH-HHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999988  999999999999 8999999886432 22222222   22378999999998742         


Q ss_pred             ---CCcCEEEEccCCCCC-----cc---cccCchhHHHHHHHHHHHHHHHHHHcC---CeEEEEecceecC
Q 029640           96 ---IEVDQIYHLACPASP-----IF---YKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYG  152 (190)
Q Consensus        96 ---~~~d~vi~~ag~~~~-----~~---~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~vSS~~~~~  152 (190)
                         .++|+||||||....     ..   ..+.....+++|+.++.++++++...-   .++|++||...+.
T Consensus        83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~  153 (266)
T 3oig_A           83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL  153 (266)
T ss_dssp             HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS
T ss_pred             HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc
Confidence               269999999997641     11   123345678999999999999997652   3899999977553

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=99.65  E-value=1.9e-15  Score=118.12  Aligned_cols=121  Identities=13%  Similarity=0.009  Sum_probs=91.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh-------hhhhhh-cCCceEEEecccccccc------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-------NLRKWI-GHPRFELIRHDVTEPLL------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~-------~~~~~~-~~~~~~~~~~D~~~~~~------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+....       ....+. ...++.++++|++|.+.      
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   85 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAAD-GANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVA   85 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTT-TCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence            47799999999999999999999999 8999999998664322       111111 13578999999998642      


Q ss_pred             ------CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc----C-CeEEEEecceec
Q 029640           96 ------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G-ARILLTSTSEVY  151 (190)
Q Consensus        96 ------~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~i~vSS~~~~  151 (190)
                            .++|+||||||......    ..+..+..+++|+.++.++++++...    + .++|++||...+
T Consensus        86 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~  156 (285)
T 3sc4_A           86 KTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRL  156 (285)
T ss_dssp             HHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCC
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhc
Confidence                  26999999999765322    12334567889999999999988654    3 389999996543

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=99.65  E-value=6.2e-16  Score=123.69  Aligned_cols=126  Identities=17%  Similarity=0.237  Sum_probs=93.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh--hcCCceEEEeccccccc-----cC--CcCEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPL-----LI--EVDQI  101 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~-----~~--~~d~v  101 (190)
                      .+|+|+||||+|+||+++++.|+++ +++|+++.|+..........+  ....++.++.+|+.|.+     +.  ++|+|
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~V   87 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDA-HRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIV   87 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHT-TCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHC-CCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEE
Confidence            4578999999999999999999999 799999999764444333211  12357899999999864     34  89999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhh
Q 029640          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKD  179 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~  179 (190)
                      ||+++..               |+.++.+++++|++.+ + ++|+ |   +||.    +++|.     .+..+...|   
T Consensus        88 i~~a~~~---------------n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~----~~~e~-----~~~~p~~~y---  136 (346)
T 3i6i_A           88 VSTVGGE---------------SILDQIALVKAMKAVGTIKRFLP-S---EFGH----DVNRA-----DPVEPGLNM---  136 (346)
T ss_dssp             EECCCGG---------------GGGGHHHHHHHHHHHCCCSEEEC-S---CCSS----CTTTC-----CCCTTHHHH---
T ss_pred             EECCchh---------------hHHHHHHHHHHHHHcCCceEEee-c---ccCC----CCCcc-----CcCCCcchH---
Confidence            9999742               7777899999999998 7 5553 4   3553    24444     444555667   


Q ss_pred             hHHHHhhhh
Q 029640          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      +.+|+.+|.
T Consensus       137 ~~sK~~~e~  145 (346)
T 3i6i_A          137 YREKRRVRQ  145 (346)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            788999875

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=99.65  E-value=9.4e-16  Score=118.06  Aligned_cols=122  Identities=10%  Similarity=-0.051  Sum_probs=90.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHh---cCCCeEEEEcCCCCCChhhhhhhhc---CCceEEEecccccccc--------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLME---NEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLL--------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~---~~~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~--------   95 (190)
                      +++++++||||+|+||+++++.|++   + |++|++++|+.+........+..   ..++.++.+|+++.+.        
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   82 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSP-GSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCT-TCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcC-CCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence            4778999999999999999999999   6 89999999865433332222221   3468899999998631        


Q ss_pred             ------CCcC--EEEEccCCCCC---c----ccccCchhHHHHHHHHHHHHHHHHHHc------C-CeEEEEecceecC
Q 029640           96 ------IEVD--QIYHLACPASP---I----FYKYNPVKTIKTNVIGTLNMLGLAKRV------G-ARILLTSTSEVYG  152 (190)
Q Consensus        96 ------~~~d--~vi~~ag~~~~---~----~~~~~~~~~~~~n~~~~~~l~~~~~~~------~-~~~i~vSS~~~~~  152 (190)
                            .++|  +||||||....   .    ...+.++..+++|+.++.++++++...      + .++|++||...+.
T Consensus        83 ~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~  161 (259)
T 1oaa_A           83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ  161 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred             HhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC
Confidence                  1468  99999997532   1    122345668999999999999988542      2 2799999987653

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=99.65  E-value=2.3e-15  Score=120.84  Aligned_cols=122  Identities=14%  Similarity=0.025  Sum_probs=92.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh-------hhhhhh-cCCceEEEecccccccc------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-------NLRKWI-GHPRFELIRHDVTEPLL------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~-------~~~~~~-~~~~~~~~~~D~~~~~~------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+....       ....+. ...++.++.+|++|++.      
T Consensus        43 l~gk~vlVTGas~GIG~aia~~La~~-Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~  121 (346)
T 3kvo_A           43 LAGCTVFITGASRGIGKAIALKAAKD-GANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVE  121 (346)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTT-TCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHHHC-CCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence            47899999999999999999999999 8999999998765321       111111 13578899999998742      


Q ss_pred             ------CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecceecC
Q 029640           96 ------IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVYG  152 (190)
Q Consensus        96 ------~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~~~  152 (190)
                            .++|+||||||.......    .+.++..+++|+.++.++++++..    .+ .+||++||...+.
T Consensus       122 ~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~  193 (346)
T 3kvo_A          122 KAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLN  193 (346)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCC
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcC
Confidence                  369999999997653221    233456799999999999998843    34 3899999976543

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=99.65  E-value=2.7e-15  Score=114.72  Aligned_cols=121  Identities=14%  Similarity=0.107  Sum_probs=91.9

Q ss_pred             cccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc-------CCcC
Q 029640           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL-------IEVD   99 (190)
Q Consensus        28 ~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~-------~~~d   99 (190)
                      |.++||+++||||++.||+++++.|+++ |.+|.+.+|+..  +.....+. ...++..+++|+.|+..       .++|
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~-Ga~Vvi~~r~~~--~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iD   81 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAA-GAEVVCAARRAP--DETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFD   81 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCC--HHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCC
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHc-CCEEEEEeCCcH--HHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCC
Confidence            4468999999999999999999999999 899999998643  22222222 23578899999998753       3599


Q ss_pred             EEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC--CeEEEEecceec
Q 029640          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVY  151 (190)
Q Consensus       100 ~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~i~vSS~~~~  151 (190)
                      ++|||||......    +++.++..+++|+.+++.+.+++.    +.+  .+||++||...+
T Consensus        82 iLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~  143 (247)
T 4hp8_A           82 ILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSF  143 (247)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT
T ss_pred             EEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhC
Confidence            9999999765432    233466689999999999888653    333  389999996643

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=99.65  E-value=9.1e-16  Score=119.73  Aligned_cols=119  Identities=17%  Similarity=0.099  Sum_probs=89.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++.+|+++...            .+
T Consensus         3 l~gk~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (281)
T 3zv4_A            3 LTGEVALITGGASGLGRALVDRFVAE-GARVAVLDKSAERLRELEVAH--GGNAVGVVGDVRSLQDQKRAAERCLAAFGK   79 (281)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHT--BTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeCCHHHHHHHHHHc--CCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            46799999999999999999999999 899999998654333222221  3578999999998642            36


Q ss_pred             cCEEEEccCCCCCccc---------ccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceec
Q 029640           98 VDQIYHLACPASPIFY---------KYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~---------~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~  151 (190)
                      +|+||||||.......         .+.++..+++|+.++.++++++..    .+.++|++||...+
T Consensus        80 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~  146 (281)
T 3zv4_A           80 IDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGF  146 (281)
T ss_dssp             CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGT
T ss_pred             CCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhc
Confidence            9999999997543111         112455789999999999888743    34589999997654

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=99.65  E-value=1.3e-15  Score=116.61  Aligned_cols=111  Identities=21%  Similarity=0.194  Sum_probs=84.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+....          +..+.+|+.|.+.            .+
T Consensus        13 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~----------~~~~~~D~~~~~~~~~~~~~~~~~~g~   81 (247)
T 1uzm_A           13 FVSRSVLVTGGNRGIGLAIAQRLAAD-GHKVAVTHRGSGAPKG----------LFGVEVDVTDSDAVDRAFTAVEEHQGP   81 (247)
T ss_dssp             CCCCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSSCCCTT----------SEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCChHHHHH----------hcCeeccCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999 8999999987554321          1247899998642            25


Q ss_pred             cCEEEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~  151 (190)
                      +|+||||||.....    ...+.++..+++|+.++.++++++.+    .+. ++|++||...+
T Consensus        82 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~  144 (247)
T 1uzm_A           82 VEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGL  144 (247)
T ss_dssp             CSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhc
Confidence            89999999975432    12334567899999999999887743    454 99999997644

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.65  E-value=3.9e-16  Score=120.96  Aligned_cols=123  Identities=18%  Similarity=0.078  Sum_probs=89.6

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhhhhh-cCCceEEEecccccccc-----------
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWI-GHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~-~~~~~~~~~~D~~~~~~-----------   95 (190)
                      ++.+++++||||+|+||+++++.|+++ |++|++++++..... .....+. ...++.++.+|+.|.+.           
T Consensus        22 ~~~~k~vlITGas~gIG~~~a~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  100 (269)
T 3gk3_A           22 MQAKRVAFVTGGMGGLGAAISRRLHDA-GMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLAD  100 (269)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHTT-TCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            357789999999999999999999999 889988875433222 2122221 23578999999998642           


Q ss_pred             -CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceecC
Q 029640           96 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~~  152 (190)
                       .++|+||||||......    ..+..+..+++|+.++.++++.+..    .+. ++|++||...+.
T Consensus       101 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  167 (269)
T 3gk3_A          101 FGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSR  167 (269)
T ss_dssp             HSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH
T ss_pred             cCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcc
Confidence             26999999999765322    2234556799999999999887743    344 899999976553

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=99.65  E-value=5.9e-16  Score=120.13  Aligned_cols=118  Identities=20%  Similarity=0.196  Sum_probs=88.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........   ...+.++.+|+.|.+.            .+
T Consensus         7 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   82 (270)
T 1yde_A            7 YAGKVVVVTGGGRGIGAGIVRAFVNS-GARVVICDKDESGGRALEQE---LPGAVFILCDVTQEDDVKTLVSETIRRFGR   82 (270)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---CTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHH---hcCCeEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            36799999999999999999999999 89999998864332222211   1247889999998642            26


Q ss_pred             cCEEEEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceec
Q 029640           98 VDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~  151 (190)
                      +|+||||||.....  .   ..+.++..+++|+.++.++++++..    .+.++|++||...+
T Consensus        83 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~  145 (270)
T 1yde_A           83 LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGA  145 (270)
T ss_dssp             CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHH
T ss_pred             CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcccc
Confidence            99999999965421  1   1223556899999999999888753    34599999997643

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.65  E-value=1.5e-15  Score=115.35  Aligned_cols=110  Identities=22%  Similarity=0.183  Sum_probs=86.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----------CCcCE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----------IEVDQ  100 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----------~~~d~  100 (190)
                      +++++||||+|+||+++++.|+++ |++|+++.|+.. .          ..+.++.+|+.|.+.           .++|+
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~-G~~V~~~~r~~~-~----------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~   69 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKAR-GYRVVVLDLRRE-G----------EDLIYVEGDVTREEDVRRAVARAQEEAPLFA   69 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEESSCC-S----------SSSEEEECCTTCHHHHHHHHHHHHHHSCEEE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEccCcc-c----------cceEEEeCCCCCHHHHHHHHHHHHhhCCceE
Confidence            588999999999999999999999 899999998654 1          145788999998642           26899


Q ss_pred             EEEccCCCCCcccc----c----CchhHHHHHHHHHHHHHHHHHHc----C-------CeEEEEecceecCC
Q 029640          101 IYHLACPASPIFYK----Y----NPVKTIKTNVIGTLNMLGLAKRV----G-------ARILLTSTSEVYGD  153 (190)
Q Consensus       101 vi~~ag~~~~~~~~----~----~~~~~~~~n~~~~~~l~~~~~~~----~-------~~~i~vSS~~~~~~  153 (190)
                      ||||||........    +    .++..+++|+.++.++++++.+.    +       .++|++||...+..
T Consensus        70 li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~  141 (242)
T 1uay_A           70 VVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEG  141 (242)
T ss_dssp             EEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHC
T ss_pred             EEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccC
Confidence            99999965432111    1    45667999999999999888643    1       18999999887653

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.64  E-value=4.5e-16  Score=120.39  Aligned_cols=119  Identities=22%  Similarity=0.221  Sum_probs=90.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++.+|++|.+.            .+
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFARE-GASLVAVDREERLLAEAVAAL--EAEAIAVVADVSDPKAVEAVFAEALEEFGR   80 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTC--CSSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--cCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            36789999999999999999999999 899999998654332222222  1468899999998642            25


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceec
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~  151 (190)
                      +|+||||||......    ..+..+..+++|+.++.++++++...   +.++|++||...+
T Consensus        81 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~  141 (263)
T 2a4k_A           81 LHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL  141 (263)
T ss_dssp             CCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc
Confidence            899999999654321    12234567899999999999988664   3499999997765

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=99.64  E-value=3.7e-16  Score=119.94  Aligned_cols=105  Identities=11%  Similarity=0.046  Sum_probs=82.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc--------c-CCcCEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------L-IEVDQIY  102 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--------~-~~~d~vi  102 (190)
                      ||+++||||+|+||+++++.|+++ |++|++++|+.+....           . +.+|+.+..        . .++|+||
T Consensus         1 mk~vlVTGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~-----------~-~~~Dl~~~~~v~~~~~~~~~~id~lv   67 (257)
T 1fjh_A            1 MSIIVISGCATGIGAATRKVLEAA-GHQIVGIDIRDAEVIA-----------D-LSTAEGRKQAIADVLAKCSKGMDGLV   67 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSSSSEEC-----------C-TTSHHHHHHHHHHHHTTCTTCCSEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCchhhcc-----------c-cccCCCCHHHHHHHHHHhCCCCCEEE
Confidence            468999999999999999999999 8999999987543211           1 557777642        2 4679999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecceecC
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVYG  152 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~~~  152 (190)
                      ||||....   ....+..+++|+.++.++++++.    +.+ .++|++||...+.
T Consensus        68 ~~Ag~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  119 (257)
T 1fjh_A           68 LCAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAH  119 (257)
T ss_dssp             ECCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGS
T ss_pred             ECCCCCCC---cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhc
Confidence            99996541   23477899999999999988885    334 4999999998774

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=99.64  E-value=5.6e-16  Score=120.46  Aligned_cols=121  Identities=12%  Similarity=0.009  Sum_probs=90.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh---hh----hh-hcCCceEEEecccccccc------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN---LR----KW-IGHPRFELIRHDVTEPLL------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~---~~----~~-~~~~~~~~~~~D~~~~~~------   95 (190)
                      +++|+++||||+|+||+++++.|+++ |++|++++|+.......   +.    .+ ....++.++.+|++|.+.      
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   82 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARD-GANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVA   82 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence            57899999999999999999999999 89999999986543211   11    11 114578899999998742      


Q ss_pred             ------CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecceec
Q 029640           96 ------IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVY  151 (190)
Q Consensus        96 ------~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~~  151 (190)
                            .++|+||||||.......    .+..+..+++|+.++.++.+++..    .+ .++|++||...+
T Consensus        83 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~  153 (274)
T 3e03_A           83 ATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSL  153 (274)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCC
T ss_pred             HHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhc
Confidence                  369999999997653221    233456789999999999888743    33 389999996644

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=99.64  E-value=1.7e-15  Score=115.70  Aligned_cols=113  Identities=22%  Similarity=0.222  Sum_probs=88.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc----------CCcCE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL----------IEVDQ  100 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~----------~~~d~  100 (190)
                      ++++++||||+|+||+++++.|++++++.|++.+|+....         ...+.++.+|++|...          .++|+
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~id~   73 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS---------AENLKFIKADLTKQQDITNVLDIIKNVSFDG   73 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC---------CTTEEEEECCTTCHHHHHHHHHHTTTCCEEE
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc---------cccceEEecCcCCHHHHHHHHHHHHhCCCCE
Confidence            5789999999999999999999995488999988865422         2356889999998632          26999


Q ss_pred             EEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHcC---CeEEEEecceecC
Q 029640          101 IYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYG  152 (190)
Q Consensus       101 vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~vSS~~~~~  152 (190)
                      ||||||......    ..+.++..+++|+.++.++++++...-   .++|++||...+.
T Consensus        74 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~  132 (244)
T 4e4y_A           74 IFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI  132 (244)
T ss_dssp             EEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC
T ss_pred             EEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc
Confidence            999999754321    223455679999999999999987652   3799999977653

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=99.64  E-value=1.4e-15  Score=117.89  Aligned_cols=123  Identities=24%  Similarity=0.199  Sum_probs=88.5

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhh-hhh-cCCceEEEecccccccc-----------
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR-KWI-GHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~-~~~-~~~~~~~~~~D~~~~~~-----------   95 (190)
                      ++++++++||||+|+||+++++.|+++ |++|++..++.......+. .+. ...++.++.+|++|.+.           
T Consensus        24 ~~~~k~~lVTGas~GIG~aia~~la~~-G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           24 METNKVAIVTGASRGIGAAIAARLASD-GFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEA  102 (267)
T ss_dssp             ---CCEEEEESCSSHHHHHHHHHHHHH-TCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346789999999999999999999999 8888887554332222222 221 23578899999998642           


Q ss_pred             -CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecC
Q 029640           96 -IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~  152 (190)
                       .++|+||||||.......    .+.++..+++|+.++.++++++...   +.++|++||...+.
T Consensus       103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~  167 (267)
T 3u5t_A          103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGL  167 (267)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhcc
Confidence             369999999997653222    2234567889999999999888654   23899999977544

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=99.64  E-value=3.9e-16  Score=115.67  Aligned_cols=102  Identities=25%  Similarity=0.237  Sum_probs=79.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------CCcCEEEEc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQIYHL  104 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d~vi~~  104 (190)
                      |+++||||+|+||+++++.|+ + |++|++++|+..                .+.+|+.+.+.        .++|+|||+
T Consensus         4 M~vlVtGasg~iG~~~~~~l~-~-g~~V~~~~r~~~----------------~~~~D~~~~~~~~~~~~~~~~~d~vi~~   65 (202)
T 3d7l_A            4 MKILLIGASGTLGSAVKERLE-K-KAEVITAGRHSG----------------DVTVDITNIDSIKKMYEQVGKVDAIVSA   65 (202)
T ss_dssp             CEEEEETTTSHHHHHHHHHHT-T-TSEEEEEESSSS----------------SEECCTTCHHHHHHHHHHHCCEEEEEEC
T ss_pred             cEEEEEcCCcHHHHHHHHHHH-C-CCeEEEEecCcc----------------ceeeecCCHHHHHHHHHHhCCCCEEEEC
Confidence            589999999999999999999 8 899999988643                35678887642        248999999


Q ss_pred             cCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecC
Q 029640          105 ACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus       105 ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~  152 (190)
                      ||.......    .+.....+++|+.++.++++++.+.   +.++|++||...+.
T Consensus        66 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~  120 (202)
T 3d7l_A           66 TGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMED  120 (202)
T ss_dssp             CCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTS
T ss_pred             CCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcC
Confidence            996543221    1233467899999999999999876   45899999976543

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=99.64  E-value=1.5e-15  Score=115.98  Aligned_cols=117  Identities=19%  Similarity=0.158  Sum_probs=77.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----------cCCc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----------LIEV   98 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----------~~~~   98 (190)
                      +++++++||||+|+||+++++.|++  ++.|++++|+.+.    ...+....++.++.+|+.+..           +.++
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~--g~~v~~~~r~~~~----~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~i   76 (245)
T 3e9n_A            3 LKKKIAVVTGATGGMGIEIVKDLSR--DHIVYALGRNPEH----LAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHV   76 (245)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHTT--TSEEEEEESCHHH----HHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCC
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHhC--CCeEEEEeCCHHH----HHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCC
Confidence            4679999999999999999999976  5788888885432    333333457889999998752           1269


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCCeEEEEecceecC
Q 029640           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYG  152 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~vSS~~~~~  152 (190)
                      |+||||||......    ..+..+..+++|+.++.++++.+.    +.+.++|++||...+.
T Consensus        77 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~  138 (245)
T 3e9n_A           77 DTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNG  138 (245)
T ss_dssp             SEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC------
T ss_pred             CEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCccccc
Confidence            99999999765422    223455679999999888877763    3346899999987655

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=99.64  E-value=1.2e-16  Score=128.91  Aligned_cols=109  Identities=28%  Similarity=0.352  Sum_probs=86.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCCc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI  111 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~~  111 (190)
                      |+|+||||+|+||+++++.|+++ ++ +|++++|+  ...+.+..                 .+.++|+|||+||...+ 
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~-g~~~v~~~d~~--~d~~~l~~-----------------~~~~~d~Vih~a~~~~~-   59 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTST-TDHHIFEVHRQ--TKEEELES-----------------ALLKADFIVHLAGVNRP-   59 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH-CCCEEEECCTT--CCHHHHHH-----------------HHHHCSEEEECCCSBCT-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-CCCEEEEECCC--CCHHHHHH-----------------HhccCCEEEECCcCCCC-
Confidence            68999999999999999999999 77 89888874  11222211                 12368999999986553 


Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhhhh
Q 029640          112 FYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       112 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                         ..+...+++|+.++.+++++|++.++  ++||+||..+|+                    .+.|   +.+|+.+|+
T Consensus        60 ---~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~--------------------~~~Y---~~sK~~~E~  112 (369)
T 3st7_A           60 ---EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ--------------------DNPY---GESKLQGEQ  112 (369)
T ss_dssp             ---TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS--------------------CSHH---HHHHHHHHH
T ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC--------------------CCCc---hHHHHHHHH
Confidence               34566788999999999999999884  799999999887                    2567   788998885

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=99.63  E-value=1.2e-15  Score=121.12  Aligned_cols=122  Identities=15%  Similarity=0.114  Sum_probs=89.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC--------Chhhhhhh-----hcCCceEEEecccccccc-
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG--------SKDNLRKW-----IGHPRFELIRHDVTEPLL-   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~--------~~~~~~~~-----~~~~~~~~~~~D~~~~~~-   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+...        ....+...     ....++.++.+|+.|.+. 
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~-G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v  122 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQD-GADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASL  122 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHC-CCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence            46799999999999999999999999 8999998775321        12222111     123578999999998642 


Q ss_pred             -----------CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceecC
Q 029640           96 -----------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYG  152 (190)
Q Consensus        96 -----------~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~~  152 (190)
                                 .++|+||||||......    ..+.++..+++|+.++.++++++..    .+  .+||++||...+.
T Consensus       123 ~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~  200 (317)
T 3oec_A          123 QAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR  200 (317)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC
Confidence                       36999999999765422    2334556799999999999887743    33  3799999977553

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=99.63  E-value=5.2e-15  Score=115.30  Aligned_cols=101  Identities=17%  Similarity=0.271  Sum_probs=81.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~  107 (190)
                      |+|+||||+|+||+++++.|++.++++|+++.|+.......     ...++.++.+|+.|.+     +.++|+|||+|+.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~-----~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD-----WRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG-----GBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh-----hhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            57999999999999999998887578999999976543321     1347899999999864     4579999999985


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecc
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS  148 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~  148 (190)
                      ...          ...|+.++.+++++|++.++ ++|++||.
T Consensus        76 ~~~----------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~  107 (289)
T 3e48_A           76 IHP----------SFKRIPEVENLVYAAKQSGVAHIIFIGYY  107 (289)
T ss_dssp             CCS----------HHHHHHHHHHHHHHHHHTTCCEEEEEEES
T ss_pred             Ccc----------chhhHHHHHHHHHHHHHcCCCEEEEEccc
Confidence            432          13478889999999999997 89999993

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=99.63  E-value=8.5e-16  Score=122.10  Aligned_cols=122  Identities=16%  Similarity=0.072  Sum_probs=90.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC----------CCChhhhhhhh-cCCceEEEecccccccc---
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF----------TGSKDNLRKWI-GHPRFELIRHDVTEPLL---   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~----------~~~~~~~~~~~-~~~~~~~~~~D~~~~~~---   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.          .........+. ...++.++.+|+.|.+.   
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~-G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  103 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAE-GARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAG  103 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHH
Confidence            47899999999999999999999999 89999998862          21122222222 13578889999998642   


Q ss_pred             ---------CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc-----------CCeEEEEecceec
Q 029640           96 ---------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-----------GARILLTSTSEVY  151 (190)
Q Consensus        96 ---------~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~-----------~~~~i~vSS~~~~  151 (190)
                               .++|+||||||......    ..+.++..+++|+.++.++++++...           +.+||++||...+
T Consensus       104 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~  183 (322)
T 3qlj_A          104 LIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAGL  183 (322)
T ss_dssp             HHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHHH
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHHc
Confidence                     26999999999765421    22345568999999999998877432           1389999997755


Q ss_pred             C
Q 029640          152 G  152 (190)
Q Consensus       152 ~  152 (190)
                      .
T Consensus       184 ~  184 (322)
T 3qlj_A          184 Q  184 (322)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.63  E-value=6.3e-15  Score=112.99  Aligned_cols=114  Identities=18%  Similarity=0.177  Sum_probs=83.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc------ccCCcCEEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP------LLIEVDQIYH  103 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~------~~~~~d~vi~  103 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.    .....+   ..+.++ +|+.+.      ...++|+|||
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~-G~~V~~~~r~~----~~~~~~---~~~~~~-~D~~~~~~~~~~~~~~iD~lv~   87 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQE-GAEVTICARNE----ELLKRS---GHRYVV-CDLRKDLDLLFEKVKEVDILVL   87 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCH----HHHHHT---CSEEEE-CCTTTCHHHHHHHSCCCSEEEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCCH----HHHHhh---CCeEEE-eeHHHHHHHHHHHhcCCCEEEE
Confidence            47899999999999999999999999 89999999864    222222   256667 998322      1227999999


Q ss_pred             ccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640          104 LACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus       104 ~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      |||......    ..+.++..+++|+.++.++.+.+    ++.+. ++|++||...+.
T Consensus        88 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  145 (249)
T 1o5i_A           88 NAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS  145 (249)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcC
Confidence            999654321    12335567899999987775544    45554 999999988765

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=99.62  E-value=2.3e-15  Score=117.21  Aligned_cols=120  Identities=21%  Similarity=0.144  Sum_probs=89.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----------CCc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----------IEV   98 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----------~~~   98 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++++|+.+.+.           .++
T Consensus        28 l~~k~vlVTGas~GIG~aia~~l~~~-G~~Vi~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~i  104 (281)
T 3ppi_A           28 FEGASAIVSGGAGGLGEATVRRLHAD-GLGVVIADLAAEKGKALADEL--GNRAEFVSTNVTSEDSVLAAIEAANQLGRL  104 (281)
T ss_dssp             GTTEEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHTTSSEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            47899999999999999999999999 899999998655443333333  3578999999998642           358


Q ss_pred             CEEEEc-cCCCCCcc---------cccCchhHHHHHHHHHHHHHHHHHH----------cC-CeEEEEecceecC
Q 029640           99 DQIYHL-ACPASPIF---------YKYNPVKTIKTNVIGTLNMLGLAKR----------VG-ARILLTSTSEVYG  152 (190)
Q Consensus        99 d~vi~~-ag~~~~~~---------~~~~~~~~~~~n~~~~~~l~~~~~~----------~~-~~~i~vSS~~~~~  152 (190)
                      |+|||| ||......         ..+.++..+++|+.++.++++++..          .+ .++|++||...+.
T Consensus       105 d~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  179 (281)
T 3ppi_A          105 RYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE  179 (281)
T ss_dssp             EEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS
T ss_pred             CeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC
Confidence            999999 44332211         1122567899999999999887742          12 3899999977653

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=99.62  E-value=1.5e-15  Score=116.38  Aligned_cols=122  Identities=15%  Similarity=0.076  Sum_probs=89.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhh-cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |+.|+++ .|+.+........+. ...++.++.+|+.+...            
T Consensus         5 l~~k~vlITGas~gIG~~~a~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (255)
T 3icc_A            5 LKGKVALVTGASRGIGRAIAKRLAND-GALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL   83 (255)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999 8888886 444333333333322 23578889999998632            


Q ss_pred             ------CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecC
Q 029640           96 ------IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus        96 ------~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~  152 (190)
                            .++|+||||||.......    .+..+..+++|+.++.++++++...   +.++|++||...+.
T Consensus        84 ~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~  153 (255)
T 3icc_A           84 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI  153 (255)
T ss_dssp             HHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTS
T ss_pred             cccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhcc
Confidence                  139999999997543322    2234567899999999999998764   23899999977554

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=99.62  E-value=3.5e-15  Score=114.95  Aligned_cols=121  Identities=12%  Similarity=0.006  Sum_probs=86.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc-------------c
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL-------------L   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~-------------~   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|+.|..             +
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~   81 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKA-GATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQ   81 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            46799999999999999999999999 89999998865433322222211 346888999999863             2


Q ss_pred             CCcCEEEEccC--CC------CCc---ccccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecceec
Q 029640           96 IEVDQIYHLAC--PA------SPI---FYKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag--~~------~~~---~~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~~  151 (190)
                      .++|+||||||  ..      ...   ...+.++..+++|+.++.++.+.+.    +.+ .++|++||...+
T Consensus        82 g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  153 (260)
T 2qq5_A           82 GRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSL  153 (260)
T ss_dssp             TCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGT
T ss_pred             CCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhc
Confidence            35899999995  21      111   1223345678899999887776653    444 499999997655

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=99.62  E-value=2.3e-15  Score=116.91  Aligned_cols=119  Identities=16%  Similarity=0.107  Sum_probs=93.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~   97 (190)
                      +++|+++||||++.||+++++.|+++ |.+|.+.+|+.+.......++  ..++..+++|++|+.            +.+
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~-Ga~V~i~~r~~~~l~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~  103 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAE-GARVFITGRRKDVLDAAIAEI--GGGAVGIQADSANLAELDRLYEKVKAEAGR  103 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHc--CCCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999 899999999766555544444  346788999999874            236


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceec
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~  151 (190)
                      +|++|||||......    ..+.++..+++|+.++.++.+++.+.   +.++|++||...+
T Consensus       104 iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~  164 (273)
T 4fgs_A          104 IDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGS  164 (273)
T ss_dssp             EEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGG
T ss_pred             CCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhc
Confidence            999999999655322    23346678999999999999988543   2379999996643

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=99.61  E-value=2e-15  Score=118.29  Aligned_cols=128  Identities=16%  Similarity=0.103  Sum_probs=93.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEcc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~a  105 (190)
                      +|+|+||||+|+||+++++.|+++ + ++|+++.|+......  ..+. ..++.++.+|+.|.+     +.++|+|||++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~~V~~~~R~~~~~~~--~~l~-~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a   80 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLED-GTFKVRVVTRNPRKKAA--KELR-LQGAEVVQGDQDDQVIMELALNGAYATFIVT   80 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHH-CSSEEEEEESCTTSHHH--HHHH-HTTCEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhc-CCceEEEEEcCCCCHHH--HHHH-HCCCEEEEecCCCHHHHHHHHhcCCEEEEeC
Confidence            578999999999999999999999 6 899999997544211  1111 236889999999864     35799999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHH
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKL  184 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~  184 (190)
                      +....        .....|+.++.++++++++.++ ++|++|+..+|+...      .     .   +...|   +.+|.
T Consensus        81 ~~~~~--------~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~------~-----~---~~~~y---~~sK~  135 (299)
T 2wm3_A           81 NYWES--------CSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTA------G-----R---LAAAH---FDGKG  135 (299)
T ss_dssp             CHHHH--------TCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTT------T-----S---CCCHH---HHHHH
T ss_pred             CCCcc--------ccchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCC------C-----c---ccCch---hhHHH
Confidence            74211        1235678899999999999887 899988777775321      1     1   12356   67788


Q ss_pred             hhhh
Q 029640          185 IGEL  188 (190)
Q Consensus       185 ~~E~  188 (190)
                      ..|+
T Consensus       136 ~~e~  139 (299)
T 2wm3_A          136 EVEE  139 (299)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8875

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=99.61  E-value=4.3e-15  Score=118.38  Aligned_cols=120  Identities=23%  Similarity=0.196  Sum_probs=87.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh---hhhhh----cCCceEEEecccccccc---------
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN---LRKWI----GHPRFELIRHDVTEPLL---------   95 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~---~~~~~----~~~~~~~~~~D~~~~~~---------   95 (190)
                      +++++|||++|+||+++++.|+++ |++|+++.|+.......   +....    ...++.++.+|++|...         
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~-G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   80 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASD-PSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTC-TTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence            578999999999999999999999 77777776654433221   11111    12478999999998642         


Q ss_pred             -CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           96 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                       .++|+||||||......    ..+..+..+++|+.++.++++++    ++.+. +||++||...+.
T Consensus        81 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~  147 (327)
T 1jtv_A           81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM  147 (327)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCccccc
Confidence             25999999999654321    22345568999999999999886    34454 999999976543

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=99.61  E-value=3.9e-15  Score=115.61  Aligned_cols=101  Identities=17%  Similarity=0.237  Sum_probs=76.9

Q ss_pred             EEEEEcccchHHHHHHHHHHhc-CCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP  107 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~-~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~  107 (190)
                      +|+||||+|+||+++++.|+++ .+++|+++.|+....... .    ..++.++.+|+.|..     +.++|+|||+|+.
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~-~----~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQAL-A----AQGITVRQADYGDEAALTSALQGVEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHH-H----HTTCEEEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhh-h----cCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            4899999999999999999986 368999999976543321 1    136788999999863     4579999999984


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceec
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY  151 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~  151 (190)
                      ..            ..|+.++.+++++|++.++ ++|++||.++|
T Consensus        76 ~~------------~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~  108 (286)
T 2zcu_A           76 EV------------GQRAPQHRNVINAAKAAGVKFIAYTSLLHAD  108 (286)
T ss_dssp             ------------------CHHHHHHHHHHHHTCCEEEEEEETTTT
T ss_pred             Cc------------hHHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence            21            1467889999999999887 89999998776

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=99.61  E-value=2.4e-15  Score=116.49  Aligned_cols=119  Identities=16%  Similarity=0.107  Sum_probs=87.5

Q ss_pred             cCCCEEEEEcc--cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~--~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||  +|+||+++++.|+++ |++|++++|+.....+.+.... ..++.++.+|++|.+.            
T Consensus         5 l~~k~vlVTGa~~s~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (269)
T 2h7i_A            5 LDGKRILVSGIITDSSIAFHIARVAQEQ-GAQLVLTGFDRLRLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAI   82 (269)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHT-TCEEEEEECSCHHHHHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCchHHHHHHHHHHC-CCEEEEEecChHHHHHHHHHhc-CCCceEEEccCCCHHHHHHHHHHHHHHh
Confidence            36789999999  999999999999999 8999999886533212221111 2357888999998631            


Q ss_pred             C---CcCEEEEccCCCCC------cc---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEeccee
Q 029640           96 I---EVDQIYHLACPASP------IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEV  150 (190)
Q Consensus        96 ~---~~d~vi~~ag~~~~------~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~  150 (190)
                      .   ++|+||||||....      ..   ..+.++..+++|+.++.++++++...   +.++|++||...
T Consensus        83 g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~  152 (269)
T 2h7i_A           83 GAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPS  152 (269)
T ss_dssp             CTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCS
T ss_pred             CCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccc
Confidence            2   79999999996541      11   12334567899999999999999754   238999998543

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=99.60  E-value=1.2e-14  Score=112.35  Aligned_cols=111  Identities=18%  Similarity=0.184  Sum_probs=85.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~   97 (190)
                      ++||+++||||++.||+++++.|+++ |++|.+.+|+.++..         ....++++|+++++            +.+
T Consensus         9 L~GK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   78 (261)
T 4h15_A            9 LRGKRALITAGTKGAGAATVSLFLEL-GAQVLTTARARPEGL---------PEELFVEADLTTKEGCAIVAEATRQRLGG   78 (261)
T ss_dssp             CTTCEEEESCCSSHHHHHHHHHHHHT-TCEEEEEESSCCTTS---------CTTTEEECCTTSHHHHHHHHHHHHHHTSS
T ss_pred             CCCCEEEEeccCcHHHHHHHHHHHHc-CCEEEEEECCchhCC---------CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            58899999999999999999999999 899999998654321         13346789999864            346


Q ss_pred             cCEEEEccCCCCCc---c---cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEeccee
Q 029640           98 VDQIYHLACPASPI---F---YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~---~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~  150 (190)
                      +|++|||||.....   .   +.+.++..+++|+.++.++.+++.    +.+. ++|++||...
T Consensus        79 iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~  142 (261)
T 4h15_A           79 VDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQR  142 (261)
T ss_dssp             CSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             CCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhh
Confidence            99999999964321   1   223455679999999998877663    3444 8999999664

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=99.60  E-value=1.3e-15  Score=117.65  Aligned_cols=122  Identities=12%  Similarity=0.027  Sum_probs=91.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh---hhhhhhhc-CCceEEEecccccccc----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---DNLRKWIG-HPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~---~~~~~~~~-~~~~~~~~~D~~~~~~----------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|......   .....+.. ..++.++.+|++|.+.          
T Consensus         9 l~~k~vlVTGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~   87 (262)
T 3ksu_A            9 LKNKVIVIAGGIKNLGALTAKTFALE-SVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEK   87 (262)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHTTS-SCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            47799999999999999999999999 899999877533211   11222211 3578899999998642          


Q ss_pred             --CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc--C-CeEEEEecceecC
Q 029640           96 --IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVYG  152 (190)
Q Consensus        96 --~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~-~~~i~vSS~~~~~  152 (190)
                        .++|+||||||......    ..+.++..+++|+.++.++++++...  + .++|++||...+.
T Consensus        88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~  153 (262)
T 3ksu_A           88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAA  153 (262)
T ss_dssp             HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHH
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhcc
Confidence              36999999999765432    12334567899999999999999764  2 3899999977554

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=99.59  E-value=1.4e-14  Score=116.51  Aligned_cols=103  Identities=17%  Similarity=0.202  Sum_probs=79.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecc-ccccc-----cCCcCEEEEcc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD-VTEPL-----LIEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D-~~~~~-----~~~~d~vi~~a  105 (190)
                      +|+|+||||+|+||+++++.|+++ +++|+++.|+.....  ...+....++.++.+| +.|.+     +.++|+|||++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~--~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a   81 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAV-GHHVRAQVHSLKGLI--AEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINT   81 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHT-TCCEEEEESCSCSHH--HHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCCChhh--HHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcC
Confidence            578999999999999999999998 799999998655421  1122223468899999 98764     35799999998


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecce
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSE  149 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~  149 (190)
                      +....           ..|..+ .+++++|++.+ + ++||+||.+
T Consensus        82 ~~~~~-----------~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           82 TSQAG-----------DEIAIG-KDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             CSTTS-----------CHHHHH-HHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CCCCc-----------HHHHHH-HHHHHHHHHcCCccEEEEeCCcc
Confidence            64210           235666 89999999988 7 999999975

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=99.59  E-value=4.5e-15  Score=111.86  Aligned_cols=103  Identities=20%  Similarity=0.186  Sum_probs=80.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc--------cCCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~d~v  101 (190)
                      +++++++||||+|+||+++++.|+++ |++|.+++|+..                   +|+.|++        +.++|+|
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~l~~~-G~~V~~~~r~~~-------------------~D~~~~~~v~~~~~~~g~id~l   63 (223)
T 3uce_A            4 SDKTVYVVLGGTSGIGAELAKQLESE-HTIVHVASRQTG-------------------LDISDEKSVYHYFETIGAFDHL   63 (223)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHCST-TEEEEEESGGGT-------------------CCTTCHHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEecCCcc-------------------cCCCCHHHHHHHHHHhCCCCEE
Confidence            36789999999999999999999999 899999988543                   5666643        2469999


Q ss_pred             EEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecC
Q 029640          102 YHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus       102 i~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~  152 (190)
                      |||||.....     ...+.++..+++|+.++.++++++.+.   +.++|++||...+.
T Consensus        64 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~  122 (223)
T 3uce_A           64 IVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRK  122 (223)
T ss_dssp             EECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTS
T ss_pred             EECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhcc
Confidence            9999966321     122345567999999999999999765   23899999977554

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=99.57  E-value=9.4e-15  Score=111.60  Aligned_cols=115  Identities=16%  Similarity=0.104  Sum_probs=78.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEE-c--CCCCCChhhhhhhhcCCceEEEecccccc---------ccCCcC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-D--NYFTGSKDNLRKWIGHPRFELIRHDVTEP---------LLIEVD   99 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~--r~~~~~~~~~~~~~~~~~~~~~~~D~~~~---------~~~~~d   99 (190)
                      +|+++||||+|+||+++++.|+++ |++|+++ .  |+.+........+   ...+..  |..+.         .+.++|
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~~~~r~~~~~~~~~~~~---~~~~~~--~~~~v~~~~~~~~~~~g~iD   74 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQD-GYTVVCHDASFADAAERQRFESEN---PGTIAL--AEQKPERLVDATLQHGEAID   74 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHT-TCEEEECCGGGGSHHHHHHHHHHS---TTEEEC--CCCCGGGHHHHHGGGSSCEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHC-CCEEEEecCCcCCHHHHHHHHHHh---CCCccc--CHHHHHHHHHHHHHHcCCCC
Confidence            478999999999999999999999 8999998 5  7643322222222   122322  22211         123699


Q ss_pred             EEEEccCCCCC---cc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640          100 QIYHLACPASP---IF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus       100 ~vi~~ag~~~~---~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      +||||||....   ..    ..+.++..+++|+.++.++++++.    +.+. ++|++||...+.
T Consensus        75 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~  139 (244)
T 1zmo_A           75 TIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKK  139 (244)
T ss_dssp             EEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS
T ss_pred             EEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCC
Confidence            99999996543   11    123455689999999999988774    3444 899999977654

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=99.57  E-value=1.5e-14  Score=114.84  Aligned_cols=120  Identities=17%  Similarity=0.139  Sum_probs=83.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC---------CCCChhhhhhhhcCCceEEEeccccccc------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---------FTGSKDNLRKWIGHPRFELIRHDVTEPL------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~---------~~~~~~~~~~~~~~~~~~~~~~D~~~~~------   94 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++.++.         ..........+.....  ...+|+.+..      
T Consensus         7 l~gk~~lVTGas~GIG~~~a~~La~~-Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~--~~~~D~~~~~~~~~~~   83 (319)
T 1gz6_A            7 FDGRVVLVTGAGGGLGRAYALAFAER-GALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG--KAVANYDSVEAGEKLV   83 (319)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC--EEEEECCCGGGHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCC--eEEEeCCCHHHHHHHH
Confidence            47799999999999999999999999 8999987653         1111121222221111  1246777653      


Q ss_pred             ------cCCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecce-ecC
Q 029640           95 ------LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSE-VYG  152 (190)
Q Consensus        95 ------~~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~-~~~  152 (190)
                            +.++|+||||||......    ..+.++..+++|+.++.++++++    ++.+. +||++||.. .++
T Consensus        84 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~  157 (319)
T 1gz6_A           84 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYG  157 (319)
T ss_dssp             HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccC
Confidence                  236999999999765421    23345678999999999998877    33454 999999975 344

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=99.57  E-value=2.9e-14  Score=119.80  Aligned_cols=122  Identities=19%  Similarity=0.218  Sum_probs=90.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCC---hhhhhhhhc-CCceEEEecccccccc-------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGS---KDNLRKWIG-HPRFELIRHDVTEPLL-------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~---~~~~~~~~~-~~~~~~~~~D~~~~~~-------~~   97 (190)
                      ..+++++||||+|+||+++++.|+++ |+ .|+++.|+....   ......+.. ..++.++.+|+.|...       ..
T Consensus       257 ~~~~~vLITGgtGgIG~~lA~~La~~-G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~  335 (511)
T 2z5l_A          257 QPSGTVLITGGMGAIGRRLARRLAAE-GAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYP  335 (511)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHT-TCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhC-CCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCC
Confidence            46799999999999999999999998 66 688888875322   122222222 3468899999999642       24


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecce-ecC
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSE-VYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~~-~~~  152 (190)
                      +|+|||+||......    ..+..+..+++|+.++.++.+++... +. +||++||.. +++
T Consensus       336 ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g  397 (511)
T 2z5l_A          336 PNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWG  397 (511)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTC
T ss_pred             CcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCC
Confidence            999999999765432    12234567899999999999998876 55 899999975 344

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=99.56  E-value=3.4e-14  Score=118.80  Aligned_cols=122  Identities=18%  Similarity=0.262  Sum_probs=91.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCCh---hhhhhhh-cCCceEEEecccccccc---------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSK---DNLRKWI-GHPRFELIRHDVTEPLL---------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~---~~~~~~~-~~~~~~~~~~D~~~~~~---------   95 (190)
                      ..+++++||||+|+||+++++.|+++ |+ +|+++.|+.....   .....+. ...++.++.+|+.|...         
T Consensus       224 ~~~~~vLITGgtGgIG~~la~~La~~-G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~  302 (486)
T 2fr1_A          224 KPTGTVLVTGGTGGVGGQIARWLARR-GAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIG  302 (486)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHH-TCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHc-CCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHH
Confidence            46799999999999999999999999 66 5888888754221   1122222 13478899999998632         


Q ss_pred             --CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEeccee-cC
Q 029640           96 --IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEV-YG  152 (190)
Q Consensus        96 --~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~-~~  152 (190)
                        ..+|+|||+||......    ..+.....+++|+.++.++.+++...+. +||++||... ++
T Consensus       303 ~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g  367 (486)
T 2fr1_A          303 DDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFG  367 (486)
T ss_dssp             TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTC
T ss_pred             hcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCC
Confidence              24799999999765421    2233556789999999999999988876 8999999764 44

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=99.55  E-value=2.6e-14  Score=109.81  Aligned_cols=117  Identities=15%  Similarity=0.153  Sum_probs=80.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccc---------ccCCcCEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEP---------LLIEVDQI  101 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~---------~~~~~d~v  101 (190)
                      |++++||||+|+||+++++.|+++ |++|++++|+.+....... +.. ..++..+  |..+.         .+.++|+|
T Consensus         1 Mk~vlVTGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~-l~~~~~~~~~~--d~~~v~~~~~~~~~~~g~iD~l   76 (254)
T 1zmt_A            1 MSTAIVTNVKHFGGMGSALRLSEA-GHTVACHDESFKQKDELEA-FAETYPQLKPM--SEQEPAELIEAVTSAYGQVDVL   76 (254)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHT-TCEEEECCGGGGSHHHHHH-HHHHCTTSEEC--CCCSHHHHHHHHHHHHSCCCEE
T ss_pred             CeEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH-HHhcCCcEEEE--CHHHHHHHHHHHHHHhCCCCEE
Confidence            468999999999999999999999 8999999987654332211 211 2233333  33321         12369999


Q ss_pred             EEccCCC-CCc-c---cccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecceecC
Q 029640          102 YHLACPA-SPI-F---YKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVYG  152 (190)
Q Consensus       102 i~~ag~~-~~~-~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~~~  152 (190)
                      |||||.. ... .   ..+.++..+++|+.++.++++++.    +.+ .++|++||...+.
T Consensus        77 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  137 (254)
T 1zmt_A           77 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG  137 (254)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS
T ss_pred             EECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCccccc
Confidence            9999976 321 1   223455689999999999988774    334 4999999976543

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=99.54  E-value=4.6e-14  Score=117.02  Aligned_cols=119  Identities=16%  Similarity=0.077  Sum_probs=90.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |.+|++++|+..  ...+..+....++.++.+|++|.+.            .+
T Consensus       211 l~gk~~LVTGgsgGIG~aiA~~La~~-Ga~Vvl~~r~~~--~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~  287 (454)
T 3u0b_A          211 LDGKVAVVTGAARGIGATIAEVFARD-GATVVAIDVDGA--AEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGG  287 (454)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEECGGG--HHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTT
T ss_pred             CCCCEEEEeCCchHHHHHHHHHHHHC-CCEEEEEeCCcc--HHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999 889999888532  2222222222356789999998642            23


Q ss_pred             -cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc----CC-eEEEEecceec
Q 029640           98 -VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEVY  151 (190)
Q Consensus        98 -~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~vSS~~~~  151 (190)
                       +|+||||||......    ..+.++..+++|+.++.++.+++...    +. +||++||...+
T Consensus       288 ~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~  351 (454)
T 3u0b_A          288 KVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGI  351 (454)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHH
T ss_pred             CceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhC
Confidence             999999999765432    22345567999999999999999765    43 89999997754

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=99.54  E-value=9.3e-14  Score=109.21  Aligned_cols=101  Identities=21%  Similarity=0.310  Sum_probs=77.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhh--hcCCceEEEeccccccc-----cCCcCEEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKW--IGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~--~~~~~~~~~~~D~~~~~-----~~~~d~vi~  103 (190)
                      +|+|+||||+|+||+++++.|+++ |++|+++.|+.... +.....+  ....++.++.+|+.|.+     +.++|+|||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~   82 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISL-GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   82 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC-CCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEE
Confidence            578999999999999999999999 79999999975432 2221111  12357899999999864     357999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEE
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILL  144 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~  144 (190)
                      +++.....           .|+.++.+++++|++.+ + |+|+
T Consensus        83 ~a~~~~~~-----------~~~~~~~~l~~aa~~~g~v~~~v~  114 (313)
T 1qyd_A           83 ALAGGVLS-----------HHILEQLKLVEAIKEAGNIKRFLP  114 (313)
T ss_dssp             CCCCSSSS-----------TTTTTHHHHHHHHHHSCCCSEEEC
T ss_pred             CCccccch-----------hhHHHHHHHHHHHHhcCCCceEEe
Confidence            99865321           25667889999999998 7 6764

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=99.53  E-value=1.3e-13  Score=106.16  Aligned_cols=120  Identities=15%  Similarity=0.062  Sum_probs=87.8

Q ss_pred             cCCCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh--hcCCceEEEeccccccc-----------
Q 029640           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPL-----------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~-----------   94 (190)
                      +++|+++||||+|  .||+++++.|+++ |++|.+.+|+.+........+  ....++.++++|+++++           
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~-Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQL-GAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK   82 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            5899999999876  8999999999999 899999999765444332222  22457899999999864           


Q ss_pred             -cCCcCEEEEccCCCCCcc-----cccC---chhHHHHHHHHHHHHHHHHHHcC---CeEEEEeccee
Q 029640           95 -LIEVDQIYHLACPASPIF-----YKYN---PVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEV  150 (190)
Q Consensus        95 -~~~~d~vi~~ag~~~~~~-----~~~~---~~~~~~~n~~~~~~l~~~~~~~~---~~~i~vSS~~~  150 (190)
                       +.++|++|||||......     .+..   +...+++|+.++..+.+.+...-   .+||++||...
T Consensus        83 ~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~  150 (256)
T 4fs3_A           83 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGG  150 (256)
T ss_dssp             HHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGG
T ss_pred             HhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEecccc
Confidence             236999999999654311     1122   23356888888888887775432   38999999653

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=99.52  E-value=2.1e-13  Score=114.90  Aligned_cols=121  Identities=12%  Similarity=0.132  Sum_probs=89.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCe-EEEE-cCCCC-------------CChhhhhhhh-cCCceEEEecccccc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNE-VIVV-DNYFT-------------GSKDNLRKWI-GHPRFELIRHDVTEP   93 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~-v~~~-~r~~~-------------~~~~~~~~~~-~~~~~~~~~~D~~~~   93 (190)
                      ..+++++||||+|+||.++++.|+++ |.. ++++ .|+..             ........+. ...++.++.+|++|.
T Consensus       249 ~~~~~vLITGgsgGIG~~lA~~La~~-G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~  327 (525)
T 3qp9_A          249 QADGTVLVTGAEEPAAAEAARRLARD-GAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDA  327 (525)
T ss_dssp             CTTSEEEESSTTSHHHHHHHHHHHHH-TCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHc-CCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCH
Confidence            46799999999999999999999999 654 6676 77642             2222233232 135789999999986


Q ss_pred             cc-----------CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHcC-----C-eEEEEecceec
Q 029640           94 LL-----------IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVG-----A-RILLTSTSEVY  151 (190)
Q Consensus        94 ~~-----------~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~-~~i~vSS~~~~  151 (190)
                      ..           ..+|+||||||......    ..+..+..+++|+.++.++.+++....     . +||++||...+
T Consensus       328 ~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~  406 (525)
T 3qp9_A          328 EAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAI  406 (525)
T ss_dssp             HHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGT
T ss_pred             HHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHc
Confidence            32           35899999999765422    223355679999999999999997765     5 89999997643

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=99.51  E-value=7.6e-14  Score=116.71  Aligned_cols=120  Identities=15%  Similarity=0.174  Sum_probs=89.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCCh---hhhhhhh-cCCceEEEecccccccc----------
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSK---DNLRKWI-GHPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~---~~~~~~~-~~~~~~~~~~D~~~~~~----------   95 (190)
                      ++++++||||+|+||+++++.|+++ |. .|+++.|+.....   .....+. ...++.++.+|+.|.+.          
T Consensus       238 ~~~~vLITGgsgGIG~alA~~La~~-Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~  316 (496)
T 3mje_A          238 VHGSVLVTGGTGGIGGRVARRLAEQ-GAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPE  316 (496)
T ss_dssp             CCSEEEEETCSSHHHHHHHHHHHHT-TCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCT
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHC-CCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence            3489999999999999999999999 65 8888888643221   2222222 23578999999998632          


Q ss_pred             -CCcCEEEEccCCC-CCc-c---cccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceec
Q 029640           96 -IEVDQIYHLACPA-SPI-F---YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~ag~~-~~~-~---~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~  151 (190)
                       ..+|+||||||.. ... .   ..+..+..+++|+.++.++.+++...+. +||++||...+
T Consensus       317 ~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~  379 (496)
T 3mje_A          317 DAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAV  379 (496)
T ss_dssp             TSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHH
T ss_pred             hCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhc
Confidence             2599999999976 321 1   2233556899999999999999998876 89999997643

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=99.46  E-value=1.7e-13  Score=117.56  Aligned_cols=119  Identities=16%  Similarity=0.059  Sum_probs=78.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC---------CCCCChhhhhhhhcCCceEEEeccccccc------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN---------YFTGSKDNLRKWIGHPRFELIRHDVTEPL------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r---------~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------   94 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|         +..........+.....  ...+|+.+..      
T Consensus        17 l~gk~~lVTGas~GIG~aiA~~La~~-Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~D~~d~~~~~~~~   93 (613)
T 3oml_A           17 YDGRVAVVTGAGAGLGREYALLFAER-GAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGG--EAVADYNSVIDGAKVI   93 (613)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEC--------------CHHHHHHHHHHTTC--CEEECCCCGGGHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCC--eEEEEeCCHHHHHHHH
Confidence            57899999999999999999999999 899999877         32222222233322211  1235766642      


Q ss_pred             ------cCCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           95 ------LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        95 ------~~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                            +.++|+||||||......    ..+.++..+++|+.++.++++++    ++.+. +||++||...+
T Consensus        94 ~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~  165 (613)
T 3oml_A           94 ETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGI  165 (613)
T ss_dssp             C----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHH
T ss_pred             HHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHc
Confidence                  135999999999765421    23345678999999999998887    44444 99999997643

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=99.46  E-value=3.5e-13  Score=105.65  Aligned_cols=96  Identities=18%  Similarity=0.332  Sum_probs=73.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC--hhhhhhh--hcCCceEEEeccccccc-----cCCcCEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--KDNLRKW--IGHPRFELIRHDVTEPL-----LIEVDQIY  102 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~--~~~~~~~--~~~~~~~~~~~D~~~~~-----~~~~d~vi  102 (190)
                      +++|+||||+|+||+++++.|+++ |++|+++.|+....  +.....+  ....++.++.+|+.|.+     +.++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   82 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI   82 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC-CCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEE
Confidence            578999999999999999999999 79999999975433  2222111  12457899999999864     34799999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEE
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RIL  143 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i  143 (190)
                      |+++...               +.++.+++++|++.+ + ++|
T Consensus        83 ~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v  110 (308)
T 1qyc_A           83 STVGSLQ---------------IESQVNIIKAIKEVGTVKRFF  110 (308)
T ss_dssp             ECCCGGG---------------SGGGHHHHHHHHHHCCCSEEE
T ss_pred             ECCcchh---------------hhhHHHHHHHHHhcCCCceEe
Confidence            9997432               334578999999988 7 666

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=99.45  E-value=3.6e-13  Score=106.27  Aligned_cols=96  Identities=20%  Similarity=0.335  Sum_probs=73.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC  106 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag  106 (190)
                      +++|+||||+|+||+++++.|+++ |++|+++.|+.......+..+. ..++.++.+|+.|.+     +.++|+|||+++
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~l~R~~~~~~~~~~~l~-~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~   88 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKL-GHPTYVFTRPNSSKTTLLDEFQ-SLGAIIVKGELDEHEKLVELMKKVDVVISALA   88 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECTTCSCHHHHHHHH-HTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHC-CCcEEEEECCCCchhhHHHHhh-cCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            358999999999999999999999 7999999997653332222221 246889999999864     357999999997


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEE
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILL  144 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~  144 (190)
                      ...               +.++.+++++|++.+ + ++|+
T Consensus        89 ~~~---------------~~~~~~l~~aa~~~g~v~~~v~  113 (318)
T 2r6j_A           89 FPQ---------------ILDQFKILEAIKVAGNIKRFLP  113 (318)
T ss_dssp             GGG---------------STTHHHHHHHHHHHCCCCEEEC
T ss_pred             hhh---------------hHHHHHHHHHHHhcCCCCEEEe
Confidence            431               344678999999988 7 6663

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=99.44  E-value=5.3e-13  Score=104.60  Aligned_cols=95  Identities=18%  Similarity=0.281  Sum_probs=72.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC-CCC-h-hh---hhhhhcCCceEEEeccccccc-----cCCcCE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGS-K-DN---LRKWIGHPRFELIRHDVTEPL-----LIEVDQ  100 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~-~~~-~-~~---~~~~~~~~~~~~~~~D~~~~~-----~~~~d~  100 (190)
                      |++|+||||+|+||+++++.|+++ |++|+++.|+. ... + ..   +..+ ...++.++.+|+.|.+     +.++|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~~~~~l-~~~~v~~v~~D~~d~~~l~~~~~~~d~   79 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKA-GNPTYALVRKTITAANPETKEELIDNY-QSLGVILLEGDINDHETLVKAIKQVDI   79 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHH-TCCEEEEECCSCCSSCHHHHHHHHHHH-HHTTCEEEECCTTCHHHHHHHHTTCSE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhC-CCcEEEEECCCcccCChHHHHHHHHHH-HhCCCEEEEeCCCCHHHHHHHHhCCCE
Confidence            578999999999999999999999 79999999875 111 1 11   1111 1246889999999864     357999


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEE
Q 029640          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RIL  143 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i  143 (190)
                      |||+++...               +.++.+++++|++.+ + ++|
T Consensus        80 vi~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           80 VICAAGRLL---------------IEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             EEECSSSSC---------------GGGHHHHHHHHHHHCCCSEEE
T ss_pred             EEECCcccc---------------cccHHHHHHHHHhcCCceEEe
Confidence            999998532               344678999999988 7 666

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=99.41  E-value=3.5e-13  Score=106.39  Aligned_cols=97  Identities=18%  Similarity=0.299  Sum_probs=72.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC-CCC-hhhhhhh--hcCCceEEEeccccccc-----cCCcCEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGS-KDNLRKW--IGHPRFELIRHDVTEPL-----LIEVDQI  101 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~-~~~-~~~~~~~--~~~~~~~~~~~D~~~~~-----~~~~d~v  101 (190)
                      ++|+|+||||+|+||+++++.|+++ |++|+++.|+. ... ......+  ....++.++.+|+.|.+     +.++|+|
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~v   81 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSF-SHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIV   81 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHT-TCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhC-CCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEE
Confidence            4578999999999999999999999 79999999975 211 1111111  11246899999999864     3579999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEE
Q 029640          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RIL  143 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i  143 (190)
                      ||+++...               +.++.+++++|++.+ + ++|
T Consensus        82 i~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           82 ISALPFPM---------------ISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             EECCCGGG---------------SGGGHHHHHHHHHHCCCCEEE
T ss_pred             EECCCccc---------------hhhHHHHHHHHHHhCCccEEe
Confidence            99997432               344678999999988 7 666

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=99.40  E-value=3e-12  Score=100.34  Aligned_cols=120  Identities=13%  Similarity=0.039  Sum_probs=79.1

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCC-----------CCChhhhhhhhcC---CceEEEecc----
Q 029640           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYF-----------TGSKDNLRKWIGH---PRFELIRHD----   89 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~-----------~~~~~~~~~~~~~---~~~~~~~~D----   89 (190)
                      +++++++||||+  |+||+++++.|+++ |++|++++|+.           ..... +..+...   .....+.+|    
T Consensus         6 l~~k~~lVTGas~~~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~   83 (297)
T 1d7o_A            6 LRGKRAFIAGIADDNGYGWAVAKSLAAA-GAEILVGTWVPALNIFETSLRRGKFDQ-SRVLPDGSLMEIKKVYPLDAVFD   83 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHT-TCEEEEEEEHHHHHHHHHHHHTTTTTG-GGBCTTSSBCCEEEEEEECTTCC
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHHHC-CCeEEEeeccccchhhhhhhhhhHhhh-hhhhccccccccccccccceecc
Confidence            467999999999  99999999999999 88999887531           11111 1111110   012333332    


Q ss_pred             ----cc----c--------cc------------cCCcCEEEEccCCCC---Cc---ccccCchhHHHHHHHHHHHHHHHH
Q 029640           90 ----VT----E--------PL------------LIEVDQIYHLACPAS---PI---FYKYNPVKTIKTNVIGTLNMLGLA  135 (190)
Q Consensus        90 ----~~----~--------~~------------~~~~d~vi~~ag~~~---~~---~~~~~~~~~~~~n~~~~~~l~~~~  135 (190)
                          +.    |        .+            +.++|+||||||...   ..   ...+.++..+++|+.++.++++++
T Consensus        84 ~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~  163 (297)
T 1d7o_A           84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF  163 (297)
T ss_dssp             SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             chhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHH
Confidence                22    1        11            125999999998542   11   122345568999999999999999


Q ss_pred             HHc---CCeEEEEecceec
Q 029640          136 KRV---GARILLTSTSEVY  151 (190)
Q Consensus       136 ~~~---~~~~i~vSS~~~~  151 (190)
                      ...   +.++|++||...+
T Consensus       164 ~~~m~~~g~iv~isS~~~~  182 (297)
T 1d7o_A          164 LPIMNPGGASISLTYIASE  182 (297)
T ss_dssp             GGGEEEEEEEEEEECGGGT
T ss_pred             HHHhccCceEEEEeccccc
Confidence            764   2489999997654

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=99.38  E-value=4.7e-13  Score=106.54  Aligned_cols=112  Identities=13%  Similarity=0.136  Sum_probs=76.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCC-------eEEEEcCCCC--CChhhhhhhhcCCceEEEeccccc-----cccCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKN-------EVIVVDNYFT--GSKDNLRKWIGHPRFELIRHDVTE-----PLLIE   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~-------~v~~~~r~~~--~~~~~~~~~~~~~~~~~~~~D~~~-----~~~~~   97 (190)
                      .|+|+||||+||||++++..|+.+ ++       +|.++++...  .......++.+. .+.++ .|+.+     ..+.+
T Consensus         4 ~mkVlVtGaaGfIG~~l~~~L~~~-g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~-~~~~~-~di~~~~~~~~a~~~   80 (327)
T 1y7t_A            4 PVRVAVTGAAGQIGYSLLFRIAAG-EMLGKDQPVILQLLEIPQAMKALEGVVMELEDC-AFPLL-AGLEATDDPKVAFKD   80 (327)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTT-TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT-TCTTE-EEEEEESCHHHHTTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC-CCCCCCCCCEEEEEeCCCchhhccchhhhhhcc-ccccc-CCeEeccChHHHhCC
Confidence            468999999999999999999997 54       8888887431  001111112111 11111 23332     23568


Q ss_pred             cCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C--eEEEEecc
Q 029640           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTSTS  148 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--~~i~vSS~  148 (190)
                      +|+|||+||.....  ...+.+.+++|+.++.++++++++++ .  +++++|+.
T Consensus        81 ~D~Vih~Ag~~~~~--~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp  132 (327)
T 1y7t_A           81 ADYALLVGAAPRKA--GMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNP  132 (327)
T ss_dssp             CSEEEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred             CCEEEECCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCc
Confidence            99999999976432  34567889999999999999999874 3  77777764

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=99.36  E-value=3.3e-12  Score=101.03  Aligned_cols=120  Identities=12%  Similarity=0.026  Sum_probs=79.3

Q ss_pred             cCCCEEEEEcc--cchHHHHHHHHHHhcCCCeEEEEcCCC-----------CCChhhhhhhhcCC---ceEEEecc----
Q 029640           30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYF-----------TGSKDNLRKWIGHP---RFELIRHD----   89 (190)
Q Consensus        30 ~~~~~vlItG~--~G~iG~~l~~~L~~~~~~~v~~~~r~~-----------~~~~~~~~~~~~~~---~~~~~~~D----   89 (190)
                      +++++++||||  +|+||+++++.|+++ |++|++++|+.           .... ....+....   ...++.+|    
T Consensus         7 l~gk~~lVTGa~~s~GIG~aia~~la~~-G~~Vv~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~   84 (315)
T 2o2s_A            7 LRGQTAFVAGVADSHGYGWAIAKHLASA-GARVALGTWPPVLGLFQKSLQSGRLD-EDRKLPDGSLIEFAGVYPLDAAFD   84 (315)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHTT-TCEEEEEECHHHHHHHHHHHHHTTTH-HHHBCTTSCBCCCSCEEECCTTCS
T ss_pred             CCCCEEEEeCCCCCCChHHHHHHHHHHC-CCEEEEEecccccchhhhhhhhhhhh-hhhhhhcccccccccccccccccc
Confidence            46799999999  899999999999999 89999987642           1111 111111110   02333333    


Q ss_pred             --------ccc--------cc------------cCCcCEEEEccCCCC---Ccc---cccCchhHHHHHHHHHHHHHHHH
Q 029640           90 --------VTE--------PL------------LIEVDQIYHLACPAS---PIF---YKYNPVKTIKTNVIGTLNMLGLA  135 (190)
Q Consensus        90 --------~~~--------~~------------~~~~d~vi~~ag~~~---~~~---~~~~~~~~~~~n~~~~~~l~~~~  135 (190)
                              +.+        .+            +.++|+||||||...   ...   ..+.++..+++|+.++.++++++
T Consensus        85 ~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~  164 (315)
T 2o2s_A           85 KPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHF  164 (315)
T ss_dssp             STTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             ccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHH
Confidence                    332        11            126999999999642   111   22345567999999999999998


Q ss_pred             HHc---CCeEEEEecceec
Q 029640          136 KRV---GARILLTSTSEVY  151 (190)
Q Consensus       136 ~~~---~~~~i~vSS~~~~  151 (190)
                      ...   +.++|++||...+
T Consensus       165 ~~~m~~~g~Iv~isS~~~~  183 (315)
T 2o2s_A          165 GPIMNEGGSAVTLSYLAAE  183 (315)
T ss_dssp             STTEEEEEEEEEEEEGGGT
T ss_pred             HHHHhcCCEEEEEeccccc
Confidence            654   2489999997654

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=99.32  E-value=4.6e-12  Score=100.30  Aligned_cols=121  Identities=12%  Similarity=0.054  Sum_probs=76.3

Q ss_pred             cCCCEEEEEcc--cchHHHHHHHHHHhcCCCeEEEEcCCC-----------CCChh-----------hhhhhhcCC----
Q 029640           30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYF-----------TGSKD-----------NLRKWIGHP----   81 (190)
Q Consensus        30 ~~~~~vlItG~--~G~iG~~l~~~L~~~~~~~v~~~~r~~-----------~~~~~-----------~~~~~~~~~----   81 (190)
                      +.+++++||||  +++||+++++.|+++ |++|++++|+.           .....           ...++....    
T Consensus         7 l~~k~~lVTGa~~s~GIG~aia~~la~~-G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (319)
T 2ptg_A            7 LRGKTAFVAGVADSNGYGWAICKLLRAA-GARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLV   85 (319)
T ss_dssp             CTTCEEEEECCCCTTSHHHHHHHHHHHT-TCEEEEEECHHHHHHHHC--------------------------------C
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHC-CCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccccc
Confidence            46789999999  899999999999999 88999987631           11000           000110000    


Q ss_pred             ceEEEecc------------ccc--------cc------------cCCcCEEEEccCCCC---Ccc---cccCchhHHHH
Q 029640           82 RFELIRHD------------VTE--------PL------------LIEVDQIYHLACPAS---PIF---YKYNPVKTIKT  123 (190)
Q Consensus        82 ~~~~~~~D------------~~~--------~~------------~~~~d~vi~~ag~~~---~~~---~~~~~~~~~~~  123 (190)
                      ...++.+|            +++        .+            +.++|+||||||...   ...   ..+.++..+++
T Consensus        86 ~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~v  165 (319)
T 2ptg_A           86 FDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSS  165 (319)
T ss_dssp             CSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhH
Confidence            02343333            222        11            125999999998642   111   22335567999


Q ss_pred             HHHHHHHHHHHHHHc---CCeEEEEecceec
Q 029640          124 NVIGTLNMLGLAKRV---GARILLTSTSEVY  151 (190)
Q Consensus       124 n~~~~~~l~~~~~~~---~~~~i~vSS~~~~  151 (190)
                      |+.++.++++++...   +.+||++||...+
T Consensus       166 N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~  196 (319)
T 2ptg_A          166 SSYSFVSLLQHFLPLMKEGGSALALSYIASE  196 (319)
T ss_dssp             HTHHHHHHHHHHGGGEEEEEEEEEEEECC--
T ss_pred             hhHHHHHHHHHHHHHHhcCceEEEEeccccc
Confidence            999999999998764   2489999997654

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.31  E-value=1.4e-11  Score=105.52  Aligned_cols=118  Identities=18%  Similarity=0.120  Sum_probs=85.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccc-cccc---------cCCc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDV-TEPL---------LIEV   98 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~-~~~~---------~~~~   98 (190)
                      +.+++++||||++.||+++++.|+++ |++|++.++..  .......+.. ..++..+.+|+ .+..         +.++
T Consensus       320 l~gkvalVTGas~GIG~a~A~~la~~-Ga~Vv~~~~~~--~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~i  396 (604)
T 2et6_A          320 LKDKVVLITGAGAGLGKEYAKWFAKY-GAKVVVNDFKD--ATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTI  396 (604)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEECSSC--CHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCC
T ss_pred             cCCCeEEEECcchHHHHHHHHHHHHC-CCEEEEEeCcc--HHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCC
Confidence            47899999999999999999999999 89999887632  2222222221 23566778898 4421         3469


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEeccee
Q 029640           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEV  150 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~  150 (190)
                      |++|||||......    ..+.++..+++|+.++.++.+++.    +.+ .+||++||...
T Consensus       397 DiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag  457 (604)
T 2et6_A          397 DILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSG  457 (604)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhh
Confidence            99999999754321    223455689999999999887763    334 38999999764

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=99.31  E-value=1.9e-11  Score=97.23  Aligned_cols=119  Identities=8%  Similarity=-0.005  Sum_probs=82.1

Q ss_pred             CCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCC---------CCChhhhhhh----hcCCceEEEecccccc--c
Q 029640           32 NMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYF---------TGSKDNLRKW----IGHPRFELIRHDVTEP--L   94 (190)
Q Consensus        32 ~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~---------~~~~~~~~~~----~~~~~~~~~~~D~~~~--~   94 (190)
                      +++++|||+++  .||+++++.|+++ |++|++..|++         +.........    .....+..+.+|+.+.  +
T Consensus         2 ~k~~lITGas~~~GIG~aiA~~la~~-G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~   80 (329)
T 3lt0_A            2 EDICFIAGIGDTNGYGWGIAKELSKR-NVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHT-TCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred             CcEEEEECCCCCCchHHHHHHHHHHC-CCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence            58899999875  9999999999999 89999766543         1111111111    1123467788888766  3


Q ss_pred             ------------------c------------CCcCEEEEccCCCC---Ccc---cccCchhHHHHHHHHHHHHHHHHHHc
Q 029640           95 ------------------L------------IEVDQIYHLACPAS---PIF---YKYNPVKTIKTNVIGTLNMLGLAKRV  138 (190)
Q Consensus        95 ------------------~------------~~~d~vi~~ag~~~---~~~---~~~~~~~~~~~n~~~~~~l~~~~~~~  138 (190)
                                        .            .++|+||||||...   ...   ..+.++..+++|+.++..+.+++...
T Consensus        81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~  160 (329)
T 3lt0_A           81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence                              1            24999999999642   111   12335568999999999999988654


Q ss_pred             C---CeEEEEecceec
Q 029640          139 G---ARILLTSTSEVY  151 (190)
Q Consensus       139 ~---~~~i~vSS~~~~  151 (190)
                      =   .+||++||...+
T Consensus       161 m~~~g~Iv~isS~~~~  176 (329)
T 3lt0_A          161 MKPQSSIISLTYHASQ  176 (329)
T ss_dssp             EEEEEEEEEEECGGGT
T ss_pred             HhhCCeEEEEeCcccc
Confidence            2   389999997643

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=99.28  E-value=4.2e-11  Score=111.72  Aligned_cols=119  Identities=17%  Similarity=0.203  Sum_probs=86.0

Q ss_pred             cCCCEEEEEcccch-HHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhh---hc--CCceEEEeccccccc--------
Q 029640           30 QSNMRILVTGGAGF-IGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKW---IG--HPRFELIRHDVTEPL--------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~-iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~---~~--~~~~~~~~~D~~~~~--------   94 (190)
                      +.+++++||||+++ ||+++++.|++. |++|+++ .|+..........+   ..  ...+.++.+|+.|..        
T Consensus       673 l~gKvaLVTGASsGgIG~aIA~~La~~-GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~  751 (1887)
T 2uv8_A          673 FKDKYVLITGAGKGSIGAEVLQGLLQG-GAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF  751 (1887)
T ss_dssp             CTTCEEEEESCCSSSHHHHHHHHHHHT-TCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHH
Confidence            46789999999998 999999999999 8899888 45433322222222   11  346888999999862        


Q ss_pred             ---------cC-CcCEEEEccCCCCCc-c-c-----ccCchhHHHHHHHHHHHHHHHHHHcC-------CeEEEEecce
Q 029640           95 ---------LI-EVDQIYHLACPASPI-F-Y-----KYNPVKTIKTNVIGTLNMLGLAKRVG-------ARILLTSTSE  149 (190)
Q Consensus        95 ---------~~-~~d~vi~~ag~~~~~-~-~-----~~~~~~~~~~n~~~~~~l~~~~~~~~-------~~~i~vSS~~  149 (190)
                               +. ++|+||||||..... . .     .+.....+++|+.++..+++.++..+       .+||++||..
T Consensus       752 i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~a  830 (1887)
T 2uv8_A          752 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNH  830 (1887)
T ss_dssp             HHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCT
T ss_pred             HHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChH
Confidence                     12 599999999976542 1 1     12345689999999999998874321       2799999965

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=99.28  E-value=2e-11  Score=111.25  Aligned_cols=119  Identities=16%  Similarity=0.174  Sum_probs=86.2

Q ss_pred             cCCCEEEEEcccch-HHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhhc-----CCceEEEeccccccc--------
Q 029640           30 QSNMRILVTGGAGF-IGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPL--------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~-iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~--------   94 (190)
                      +++++++||||+|+ ||+++++.|+++ |+.|+++ +|+..........+..     ..++.++.+|+.|..        
T Consensus       474 L~GKvALVTGASgGGIGrAIAr~LA~~-GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~  552 (1688)
T 2pff_A          474 FKDKYVLITGAGKGSIGAEVLQGLLQG-GAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF  552 (1688)
T ss_dssp             CCSCCEEECSCSSSSTHHHHHHHHHHH-TCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHHHHC-cCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence            46789999999998 999999999999 8888888 5655444333333311     246888999999863        


Q ss_pred             ---------cC-CcCEEEEccCCCCCc-c-c-----ccCchhHHHHHHHHHHHHHHHHHH--c----C-CeEEEEecce
Q 029640           95 ---------LI-EVDQIYHLACPASPI-F-Y-----KYNPVKTIKTNVIGTLNMLGLAKR--V----G-ARILLTSTSE  149 (190)
Q Consensus        95 ---------~~-~~d~vi~~ag~~~~~-~-~-----~~~~~~~~~~n~~~~~~l~~~~~~--~----~-~~~i~vSS~~  149 (190)
                               +. ++|+||||||..... . .     .+.....+++|+.++.++++.++.  .    + .+||++||..
T Consensus       553 I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiA  631 (1688)
T 2pff_A          553 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNH  631 (1688)
T ss_dssp             HHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCT
T ss_pred             HHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChH
Confidence                     12 589999999975432 1 1     223456789999999999888732  1    2 2799999854

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.25  E-value=2.8e-11  Score=103.65  Aligned_cols=117  Identities=16%  Similarity=0.080  Sum_probs=79.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC---------CCChhhhhhhhcC-CceEEEeccccccc-----
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF---------TGSKDNLRKWIGH-PRFELIRHDVTEPL-----   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~---------~~~~~~~~~~~~~-~~~~~~~~D~~~~~-----   94 (190)
                      +.+++++||||++.||+++++.|+++ |++|++.+|+.         +.......++... ....   +|+.|..     
T Consensus         6 l~gkvalVTGas~GIG~a~A~~la~~-Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~---~d~~d~~~~~~~   81 (604)
T 2et6_A            6 FKDKVVIITGAGGGLGKYYSLEFAKL-GAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAV---ADYNNVLDGDKI   81 (604)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECC-----------CHHHHHHHHHHHTTCEEE---EECCCTTCHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHc-CCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEE---EEcCCHHHHHHH
Confidence            46799999999999999999999999 89999987754         1111112222211 2222   3554432     


Q ss_pred             -------cCCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEeccee
Q 029640           95 -------LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEV  150 (190)
Q Consensus        95 -------~~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~  150 (190)
                             +.++|++|||||......    ..+.++..+++|+.++.++.+++.    +.+ .+||++||...
T Consensus        82 v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag  153 (604)
T 2et6_A           82 VETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAG  153 (604)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHH
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHH
Confidence                   236999999999754321    223455689999999999887763    334 39999999764

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.24  E-value=1.4e-11  Score=108.52  Aligned_cols=119  Identities=18%  Similarity=0.227  Sum_probs=88.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHH-hcCCC-eEEEEcCCCCC---Chhhhhhhhc-CCceEEEecccccccc--------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLM-ENEKN-EVIVVDNYFTG---SKDNLRKWIG-HPRFELIRHDVTEPLL--------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~-~~~~~-~v~~~~r~~~~---~~~~~~~~~~-~~~~~~~~~D~~~~~~--------   95 (190)
                      ..+++++||||+|.||+.+++.|+ ++ |. +|++++|+...   ....+.++.. ..++.++.+|++|.+.        
T Consensus       528 ~~~~~~lItGg~~GlG~aiA~~la~~~-Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~  606 (795)
T 3slk_A          528 DAAGTVLVTGGTGALGAEVARHLVIER-GVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASI  606 (795)
T ss_dssp             CTTSEEEEETTTSHHHHHHHHHHHHTS-SCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             ccccceeeccCCCCcHHHHHHHHHHHc-CCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence            367999999999999999999999 67 65 68888887332   2233333322 3578999999998632        


Q ss_pred             ---CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEeccee
Q 029640           96 ---IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV  150 (190)
Q Consensus        96 ---~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~  150 (190)
                         ..+|+||||||.......    .+.++..+++|+.++.++.+++.. ..+||++||...
T Consensus       607 ~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~-~l~iV~~SS~ag  667 (795)
T 3slk_A          607 PDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDP-DVALVLFSSVSG  667 (795)
T ss_dssp             CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCT-TSEEEEEEETHH
T ss_pred             HHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhh-CCEEEEEccHHh
Confidence               158999999997654322    233556789999999999998832 238999999764

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=99.22  E-value=7.9e-11  Score=109.75  Aligned_cols=120  Identities=18%  Similarity=0.174  Sum_probs=84.6

Q ss_pred             cCCCEEEEEcccch-HHHHHHHHHHhcCCCeEEEEc-CCCCCChhhhhhh---hc--CCceEEEeccccccc--------
Q 029640           30 QSNMRILVTGGAGF-IGSHLVDKLMENEKNEVIVVD-NYFTGSKDNLRKW---IG--HPRFELIRHDVTEPL--------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~-iG~~l~~~L~~~~~~~v~~~~-r~~~~~~~~~~~~---~~--~~~~~~~~~D~~~~~--------   94 (190)
                      +.+++++||||+|+ ||+++++.|+++ |++|++++ |+..........+   ..  ..++.++.+|+.|..        
T Consensus       650 L~gKvaLVTGASgGgIG~aIAr~LA~~-GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~  728 (1878)
T 2uv9_A          650 FQGKHALMTGAGAGSIGAEVLQGLLSG-GAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNY  728 (1878)
T ss_dssp             CTTCEEEEESCCTTSHHHHHHHHHHHT-TCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHHC-CCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHH
Confidence            46789999999999 999999999999 88898885 4332222211111   11  346888999999852        


Q ss_pred             -------cC-CcCEEEEccCCCCCc-c-c-----ccCchhHHHHHHHHHHHHHHHHH--H----cC-CeEEEEeccee
Q 029640           95 -------LI-EVDQIYHLACPASPI-F-Y-----KYNPVKTIKTNVIGTLNMLGLAK--R----VG-ARILLTSTSEV  150 (190)
Q Consensus        95 -------~~-~~d~vi~~ag~~~~~-~-~-----~~~~~~~~~~n~~~~~~l~~~~~--~----~~-~~~i~vSS~~~  150 (190)
                             +. ++|+||||||..... . .     .+.....+++|+.++.++++.++  .    .+ .+||++||...
T Consensus       729 i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag  806 (1878)
T 2uv9_A          729 IYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHG  806 (1878)
T ss_dssp             HHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSS
T ss_pred             HHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhh
Confidence                   22 599999999976432 1 1     12345689999999998887642  1    12 37999999653

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=99.21  E-value=2.2e-10  Score=92.84  Aligned_cols=118  Identities=15%  Similarity=-0.023  Sum_probs=81.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHh-cCCCeEEEEcCCCCCChh-----------hhh-hh-hcCCceEEEeccccccc--
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKD-----------NLR-KW-IGHPRFELIRHDVTEPL--   94 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~-~~~~~v~~~~r~~~~~~~-----------~~~-~~-~~~~~~~~~~~D~~~~~--   94 (190)
                      .+|+++||||++.||+++++.|++ . |..|.++.|+.+....           .+. .+ .....+..+.+|+++++  
T Consensus        46 ~gKvaLVTGas~GIG~AiA~~LA~g~-GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v  124 (405)
T 3zu3_A           46 GPKRVLVIGASTGYGLAARITAAFGC-GADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIK  124 (405)
T ss_dssp             CCSEEEEESCSSHHHHHHHHHHHHHH-CCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred             CCCEEEEeCcchHHHHHHHHHHHHhc-CCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence            579999999999999999999999 8 8999888876554321           111 11 12346788999999864  


Q ss_pred             ----------cCCcCEEEEccCCCC---------------Cc-----------------------ccccCchhHHHHHHH
Q 029640           95 ----------LIEVDQIYHLACPAS---------------PI-----------------------FYKYNPVKTIKTNVI  126 (190)
Q Consensus        95 ----------~~~~d~vi~~ag~~~---------------~~-----------------------~~~~~~~~~~~~n~~  126 (190)
                                +.++|++|||||...               +.                       ..++.++..+++|..
T Consensus       125 ~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~  204 (405)
T 3zu3_A          125 QLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGG  204 (405)
T ss_dssp             HHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhch
Confidence                      346999999998641               10                       112234456777877


Q ss_pred             HHH-HHHHHHHHc-----CCeEEEEecce
Q 029640          127 GTL-NMLGLAKRV-----GARILLTSTSE  149 (190)
Q Consensus       127 ~~~-~l~~~~~~~-----~~~~i~vSS~~  149 (190)
                      +.. .+++++...     +.++|++||..
T Consensus       205 ~~~~~~~~~~~~~~m~~~gG~IVniSSi~  233 (405)
T 3zu3_A          205 EDWQMWIDALLDAGVLAEGAQTTAFTYLG  233 (405)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEEEEEEECCC
T ss_pred             hHHHHHHHHHHHHhhhhCCcEEEEEeCch
Confidence            765 555555432     24899999965

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=99.09  E-value=8.4e-10  Score=90.04  Aligned_cols=76  Identities=13%  Similarity=-0.003  Sum_probs=58.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHh-cCCCeEEEEcCCCCCChhh-----------h-hhhh-cCCceEEEeccccccc--
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDN-----------L-RKWI-GHPRFELIRHDVTEPL--   94 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~-~~~~~v~~~~r~~~~~~~~-----------~-~~~~-~~~~~~~~~~D~~~~~--   94 (190)
                      .+|+++||||++.||+++++.|+. . |..|.++.|+.+.....           + ..+. ....+..+.+|+++++  
T Consensus        60 ~gKvaLVTGASsGIG~AiA~~LA~~~-GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v  138 (422)
T 3s8m_A           60 GPKKVLVIGASSGYGLASRITAAFGF-GADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR  138 (422)
T ss_dssp             SCSEEEEESCSSHHHHHHHHHHHHHH-CCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhC-CCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence            578999999999999999999999 8 89999988876544321           1 1111 2346788999999863  


Q ss_pred             ----------c-CCcCEEEEccCC
Q 029640           95 ----------L-IEVDQIYHLACP  107 (190)
Q Consensus        95 ----------~-~~~d~vi~~ag~  107 (190)
                                + .++|+||||||.
T Consensus       139 ~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          139 AQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             HHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCCEEEEcCcc
Confidence                      4 569999999986

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=99.07  E-value=3.2e-09  Score=86.87  Aligned_cols=78  Identities=9%  Similarity=0.029  Sum_probs=59.3

Q ss_pred             cCCCEEEEEcccchHHHH--HHHHHHhcCCCeEEEEcCCCCCCh-----------hhhhhhh--cCCceEEEeccccccc
Q 029640           30 QSNMRILVTGGAGFIGSH--LVDKLMENEKNEVIVVDNYFTGSK-----------DNLRKWI--GHPRFELIRHDVTEPL   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~--l~~~L~~~~~~~v~~~~r~~~~~~-----------~~~~~~~--~~~~~~~~~~D~~~~~   94 (190)
                      ..+++++||||++.||++  +++.|.+. |..|+++.|+.....           ..+..+.  ....+..+.+|+.+.+
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~-Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~  136 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGP-EAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNE  136 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSS-CCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhC-CCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHH
Confidence            468999999999999999  99999988 899988888655432           2222221  2346888999999863


Q ss_pred             ------------cCCcCEEEEccCCC
Q 029640           95 ------------LIEVDQIYHLACPA  108 (190)
Q Consensus        95 ------------~~~~d~vi~~ag~~  108 (190)
                                  +.++|+||||||..
T Consensus       137 ~v~~~v~~i~~~~G~IDiLVnNAG~~  162 (418)
T 4eue_A          137 TKDKVIKYIKDEFGKIDLFVYSLAAP  162 (418)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCccc
Confidence                        23699999999864

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.04  E-value=6.2e-10  Score=107.64  Aligned_cols=121  Identities=14%  Similarity=0.113  Sum_probs=84.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCCh---hhhhhhh-cCCceEEEecccccccc---------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSK---DNLRKWI-GHPRFELIRHDVTEPLL---------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~---~~~~~~~-~~~~~~~~~~D~~~~~~---------   95 (190)
                      ..+++++||||+|.||+++++.|+++ |. .|++++|+.....   ..+..+. ...++..+.+|+.|.+.         
T Consensus      1882 ~~~k~~lITGgs~GIG~aia~~la~~-Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~ 1960 (2512)
T 2vz8_A         1882 PPHKSYVITGGLGGFGLQLAQWLRLR-GAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEAT 1960 (2512)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHT-TCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHC-CCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHH
Confidence            36799999999999999999999999 66 4888888765543   2222222 23468889999998632         


Q ss_pred             --CCcCEEEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHHHHc--C-CeEEEEecceec
Q 029640           96 --IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVY  151 (190)
Q Consensus        96 --~~~d~vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~--~-~~~i~vSS~~~~  151 (190)
                        ..+|+||||||.....    ...+.+...+++|+.++.++.+++...  . .+||++||....
T Consensus      1961 ~~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~ 2025 (2512)
T 2vz8_A         1961 QLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCG 2025 (2512)
T ss_dssp             HHSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHH
T ss_pred             hcCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhc
Confidence              3599999999965432    123445667899999999998887654  2 389999997643

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.99  E-value=5e-09  Score=70.26  Aligned_cols=92  Identities=22%  Similarity=0.141  Sum_probs=68.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~  104 (190)
                      ++++|+|+|+ |++|+.+++.|++. | ++|++++|+.+.    ...+. ..++.++.+|+.+..     +.++|+|||+
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~-g~~~v~~~~r~~~~----~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~   76 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTS-SNYSVTVADHDLAA----LAVLN-RMGVATKQVDAKDEAGLAKALGGFDAVISA   76 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHC-SSEEEEEEESCHHH----HHHHH-TTTCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhC-CCceEEEEeCCHHH----HHHHH-hCCCcEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            4579999998 99999999999999 6 899999885432    22222 346778888988753     3579999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEec
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS  147 (190)
                      ++..                  ....+++.+.+.+++++.+++
T Consensus        77 ~~~~------------------~~~~~~~~~~~~g~~~~~~~~  101 (118)
T 3ic5_A           77 APFF------------------LTPIIAKAAKAAGAHYFDLTE  101 (118)
T ss_dssp             SCGG------------------GHHHHHHHHHHTTCEEECCCS
T ss_pred             CCch------------------hhHHHHHHHHHhCCCEEEecC
Confidence            8521                  035688888888886665543

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=98.89  E-value=1.3e-08  Score=80.13  Aligned_cols=111  Identities=14%  Similarity=0.036  Sum_probs=74.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcC--CCCCChhhhhhhhc----CCceEEEeccccccccCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDN--YFTGSKDNLRKWIG----HPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r--~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |||+|+||+|++|..++..|+..+. .++.++++  ..+.......++.+    ...+.....|  ...+.+.|+|||+|
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~--~~a~~~aDvVi~~a   78 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG--YEDTAGSDVVVITA   78 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC--GGGGTTCSEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCC--HHHhCCCCEEEEcC
Confidence            5899999999999999999998732 25777776  32211111111111    1233333322  45577899999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEec
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST  147 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS  147 (190)
                      |....  ........+..|+..+..+++.+.+.+. .+|+++|
T Consensus        79 g~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~S  119 (303)
T 1o6z_A           79 GIPRQ--PGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS  119 (303)
T ss_dssp             CCCCC--TTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            85432  1234456789999999999999999875 5666665

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=98.89  E-value=1e-08  Score=81.51  Aligned_cols=111  Identities=14%  Similarity=0.018  Sum_probs=75.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC--CeEEEEcCCCCCChhhhhhhhcC---CceEEEec--cccccccCCcCEEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWIGH---PRFELIRH--DVTEPLLIEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~--~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~--D~~~~~~~~~d~vi~  103 (190)
                      +.|+|+|+||+|++|..++..|+.+ +  ++|.+++++..  .....++...   ..+..+..  |+ .+.+.++|+|||
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~-g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~~~~t~d~-~~al~gaDvVi~   82 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMN-PLVSVLHLYDVVNA--PGVTADISHMDTGAVVRGFLGQQQL-EAALTGMDLIIV   82 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHC-TTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEEEESHHHH-HHHHTTCSEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhC-CCCCEEEEEeCCCc--HhHHHHhhcccccceEEEEeCCCCH-HHHcCCCCEEEE
Confidence            3478999999999999999999987 6  78888886543  2222222211   12222211  11 134678999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEec
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST  147 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS  147 (190)
                      +||....  ........+..|+..+.++++.+.+.+. .+|+++|
T Consensus        83 ~ag~~~~--~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S  125 (326)
T 1smk_A           83 PAGVPRK--PGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS  125 (326)
T ss_dssp             CCCCCCC--SSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             cCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence            9985432  1233456789999999999999998875 5666666

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=98.85  E-value=1.4e-08  Score=80.82  Aligned_cols=114  Identities=13%  Similarity=0.098  Sum_probs=74.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCC------CeEEEEcCC----CCCChhhhhhhhcC--Cce-EEEeccccccccCCc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEK------NEVIVVDNY----FTGSKDNLRKWIGH--PRF-ELIRHDVTEPLLIEV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~------~~v~~~~r~----~~~~~~~~~~~~~~--~~~-~~~~~D~~~~~~~~~   98 (190)
                      .+||+||||+|++|+.++..|+.++.      .+|.++++.    .+.......++.+.  .-. .+...+-....+.++
T Consensus         5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a   84 (329)
T 1b8p_A            5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA   84 (329)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence            47899999999999999999998732      278888775    21111111122211  111 111111112346789


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--C-eEEEEec
Q 029640           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTST  147 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~-~~i~vSS  147 (190)
                      |+|||+||....  ......+.+..|+..+.++++.+.+..  . ++|++|.
T Consensus        85 D~Vi~~ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN  134 (329)
T 1b8p_A           85 DVALLVGARPRG--PGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN  134 (329)
T ss_dssp             SEEEECCCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CEEEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence            999999985442  233456788999999999999998873  3 7888887

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=98.84  E-value=2.1e-08  Score=79.25  Aligned_cols=113  Identities=11%  Similarity=0.101  Sum_probs=73.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcC--CCCCChh---hhhhhhcC--CceEEEecc-ccccccCCcCEEEE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDN--YFTGSKD---NLRKWIGH--PRFELIRHD-VTEPLLIEVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r--~~~~~~~---~~~~~~~~--~~~~~~~~D-~~~~~~~~~d~vi~  103 (190)
                      |||+||||+|++|+.++..|+..+. .++.++++  ..+....   .+.+....  ..++....+ -..+.+.++|+|||
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            5899999999999999999998732 35777766  3211111   11111111  123333322 22456788999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEec
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS  147 (190)
                      +||....  ........+..|+..+.++++.+++.+.++|+++|
T Consensus        81 ~Ag~~~~--~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~vlv~S  122 (313)
T 1hye_A           81 TSGVPRK--EGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVIT  122 (313)
T ss_dssp             CCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECS
T ss_pred             CCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence            9986432  22345667999999999999999887633555555

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=98.70  E-value=9.2e-09  Score=80.21  Aligned_cols=78  Identities=9%  Similarity=0.141  Sum_probs=56.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~  104 (190)
                      +++++++||||+|++|+++++.|++. |.+|+++.|+.+........+....++.++.+|+.+.+     ..++|+|||+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~-G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~  195 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTA  195 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-cCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEEC
Confidence            47899999999999999999999999 78899999865433322222211123556778887642     3468999999


Q ss_pred             cCCC
Q 029640          105 ACPA  108 (190)
Q Consensus       105 ag~~  108 (190)
                      +|..
T Consensus       196 ag~g  199 (287)
T 1lu9_A          196 GAIG  199 (287)
T ss_dssp             CCTT
T ss_pred             CCcc
Confidence            9753

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=98.60  E-value=2e-07  Score=91.12  Aligned_cols=107  Identities=12%  Similarity=0.055  Sum_probs=75.0

Q ss_pred             cCCCEEEEEcccch-HHHHHHHHHHhcCCCeEEEEcCCCCC-----Chhhhhhhhc-CCceEEEeccccccc--------
Q 029640           30 QSNMRILVTGGAGF-IGSHLVDKLMENEKNEVIVVDNYFTG-----SKDNLRKWIG-HPRFELIRHDVTEPL--------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~-iG~~l~~~L~~~~~~~v~~~~r~~~~-----~~~~~~~~~~-~~~~~~~~~D~~~~~--------   94 (190)
                      +++|+++||||++. ||+++++.|++. |.+|++.+|+...     .......+.. ..++..+.+|+++.+        
T Consensus      2134 l~gKvaLVTGAs~GsIG~AiA~~La~~-GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~ 2212 (3089)
T 3zen_D         2134 XXDEVAVVTGASKGSIAASVVGQLLDG-GATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEW 2212 (3089)
T ss_dssp             CCCCEEEEESCCTTSHHHHHHHHHHHT-TCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHHC-CCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHH
Confidence            57899999999999 999999999999 8999999887554     1112222221 236778899999852        


Q ss_pred             --------cCCcCEEEEccCCCC----C-----cccccCc----hhHHHHHHHHHHHHHHHHHH
Q 029640           95 --------LIEVDQIYHLACPAS----P-----IFYKYNP----VKTIKTNVIGTLNMLGLAKR  137 (190)
Q Consensus        95 --------~~~~d~vi~~ag~~~----~-----~~~~~~~----~~~~~~n~~~~~~l~~~~~~  137 (190)
                              +.++|++|||||...    .     ....+..    +..+++|+.++..+++.+..
T Consensus      2213 i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~ 2276 (3089)
T 3zen_D         2213 VGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSK 2276 (3089)
T ss_dssp             HTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             HHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    235999999999711    0     0011222    23488999999888776643

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.45  E-value=4e-07  Score=74.35  Aligned_cols=94  Identities=14%  Similarity=0.215  Sum_probs=64.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCC--CeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccccc-----C--CcCE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL-----I--EVDQ  100 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~--~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~-----~--~~d~  100 (190)
                      |++|+|+|+ |+||+.+++.|++++.  ..|.+.+|+.+........+..  ..++..+.+|+.+...     .  ++|+
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI   79 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence            478999998 9999999999999843  3899998865544433333322  1357888999987532     2  3899


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEE
Q 029640          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL  144 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~  144 (190)
                      |||+++...                  ...++++|.+.+++++-
T Consensus        80 Vin~ag~~~------------------~~~v~~a~l~~g~~vvD  105 (405)
T 4ina_A           80 VLNIALPYQ------------------DLTIMEACLRTGVPYLD  105 (405)
T ss_dssp             EEECSCGGG------------------HHHHHHHHHHHTCCEEE
T ss_pred             EEECCCccc------------------ChHHHHHHHHhCCCEEE
Confidence            999997321                  13466677777766554

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.43  E-value=1.3e-06  Score=68.89  Aligned_cols=110  Identities=14%  Similarity=0.028  Sum_probs=73.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC--CeEEEEcCCCCCChhhhhhhhcC---CceEEEec-cccccccCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWIGH---PRFELIRH-DVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~--~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~-D~~~~~~~~~d~vi~~ag  106 (190)
                      |||.|+|++|++|..++..|+.. +  .++.++++..  ......++.+.   ..+..... +-..+.+.+.|+||+++|
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~-~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag   77 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNS-PLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAG   77 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTC-TTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhC-CCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCC
Confidence            58999999999999999999987 5  7899998865  22222222111   12222211 111124678999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ....  ......+.+..|+..+..+++.+.+...  ++|++|-
T Consensus        78 ~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN  118 (314)
T 1mld_A           78 VPRK--PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN  118 (314)
T ss_dssp             CCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             cCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence            6432  1233456689999999999998877653  6777654

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=98.42  E-value=9.2e-07  Score=66.60  Aligned_cols=72  Identities=21%  Similarity=0.350  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc----------------cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-
Q 029640           31 SNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-   93 (190)
Q Consensus        31 ~~~~vlItG~----------------~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-   93 (190)
                      .|++|+||||                +|.+|.++++.++.+ |++|+++.|.......      ....+..+..+-..+ 
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~-Ga~V~lv~~~~~~~~~------~~~~~~~~~v~s~~em   74 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSA-GYEVCLITTKRALKPE------PHPNLSIREITNTKDL   74 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHT-TCEEEEEECTTSCCCC------CCTTEEEEECCSHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHC-CCEEEEEeCCcccccc------CCCCeEEEEHhHHHHH
Confidence            5799999999                999999999999999 8999999886432210      012455544432221 


Q ss_pred             ------ccCCcCEEEEccCCCC
Q 029640           94 ------LLIEVDQIYHLACPAS  109 (190)
Q Consensus        94 ------~~~~~d~vi~~ag~~~  109 (190)
                            .+.++|++||+||+..
T Consensus        75 ~~~v~~~~~~~Dili~aAAvsD   96 (232)
T 2gk4_A           75 LIEMQERVQDYQVLIHSMAVSD   96 (232)
T ss_dssp             HHHHHHHGGGCSEEEECSBCCS
T ss_pred             HHHHHHhcCCCCEEEEcCcccc
Confidence                  2346999999999655

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.38  E-value=1.5e-06  Score=71.87  Aligned_cols=103  Identities=17%  Similarity=0.190  Sum_probs=67.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEEeccccccc-----cCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPL-----LIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~-----~~~~d~vi~~  104 (190)
                      ++++|+|+| +|++|+++++.|++. +++|.+.+|+.+.    ...+... ..+..+.+|+.+..     +.++|+|||+
T Consensus         2 ~~k~VlViG-aG~iG~~ia~~L~~~-G~~V~v~~R~~~~----a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~   75 (450)
T 1ff9_A            2 ATKSVLMLG-SGFVTRPTLDVLTDS-GIKVTVACRTLES----AKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISL   75 (450)
T ss_dssp             CCCEEEEEC-CSTTHHHHHHHHHTT-TCEEEEEESSHHH----HHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhC-cCEEEEEECCHHH----HHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence            568999998 899999999999987 7889999885432    2222211 24677888988643     3479999999


Q ss_pred             cCCCCCcccccCchhHHH--HH-------HHHHHHHHHHHHHcCCeE
Q 029640          105 ACPASPIFYKYNPVKTIK--TN-------VIGTLNMLGLAKRVGARI  142 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~--~n-------~~~~~~l~~~~~~~~~~~  142 (190)
                      ++.....   ......+.  .+       ...+.++++++++.++++
T Consensus        76 a~~~~~~---~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~~  119 (450)
T 1ff9_A           76 IPYTFHA---TVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITV  119 (450)
T ss_dssp             CC--CHH---HHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCEE
T ss_pred             Cccccch---HHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCeE
Confidence            9753211   00111111  11       235678889998888763

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=98.31  E-value=1.4e-06  Score=69.35  Aligned_cols=113  Identities=16%  Similarity=0.137  Sum_probs=72.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-Ce-----EEEEcCCCC--CChhhhhhhhc--CCceEEEe-ccccccccCCcCEE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NE-----VIVVDNYFT--GSKDNLRKWIG--HPRFELIR-HDVTEPLLIEVDQI  101 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~-----v~~~~r~~~--~~~~~~~~~~~--~~~~~~~~-~D~~~~~~~~~d~v  101 (190)
                      ++|+||||+|+||+.++..|+..+- .+     +.++++...  ...-...++.+  .+-..-+. .+-....+.++|+|
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDvV   83 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCEE
Confidence            6899999999999999999998732 14     777776431  11111112211  11121111 11112356789999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC---eEEEEec
Q 029640          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTST  147 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~vSS  147 (190)
                      |+.||...  ...++..+.++.|...+..+++.+++++.   +++.+|.
T Consensus        84 vitAg~pr--kpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN  130 (333)
T 5mdh_A           84 ILVGSMPR--RDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN  130 (333)
T ss_dssp             EECCSCCC--CTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             EEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence            99998543  22345667789999999999999988763   5776665

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=98.31  E-value=2.3e-06  Score=64.27  Aligned_cols=69  Identities=17%  Similarity=0.214  Sum_probs=50.0

Q ss_pred             cCCCEEEEEcc----------------cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc
Q 029640           30 QSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP   93 (190)
Q Consensus        30 ~~~~~vlItG~----------------~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~   93 (190)
                      +.+++|+||||                +|.+|.++++.|+.+ |++|+++.+......        ...++.  .|+.+.
T Consensus         6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~-Ga~V~l~~~~~~l~~--------~~g~~~--~dv~~~   74 (226)
T 1u7z_A            6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARR-GANVTLVSGPVSLPT--------PPFVKR--VDVMTA   74 (226)
T ss_dssp             TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHT-TCEEEEEECSCCCCC--------CTTEEE--EECCSH
T ss_pred             CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHC-CCEEEEEECCccccc--------CCCCeE--EccCcH
Confidence            47899999999                699999999999999 899988877542110        113332  344442


Q ss_pred             ---------ccCCcCEEEEccCCCC
Q 029640           94 ---------LLIEVDQIYHLACPAS  109 (190)
Q Consensus        94 ---------~~~~~d~vi~~ag~~~  109 (190)
                               .+.++|++||+||+..
T Consensus        75 ~~~~~~v~~~~~~~Dili~~Aav~d   99 (226)
T 1u7z_A           75 LEMEAAVNASVQQQNIFIGCAAVAD   99 (226)
T ss_dssp             HHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred             HHHHHHHHHhcCCCCEEEECCcccC
Confidence                     1346999999999754

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.27  E-value=1.2e-05  Score=55.32  Aligned_cols=97  Identities=18%  Similarity=0.174  Sum_probs=62.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------cCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~~d~vi~~  104 (190)
                      ++++++|+|+ |.+|+.+++.|.+. +++|.+++++.+    ....+. ......+.+|..+..      ..++|+||++
T Consensus         5 ~~~~v~I~G~-G~iG~~~a~~l~~~-g~~v~~~d~~~~----~~~~~~-~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~   77 (144)
T 2hmt_A            5 KNKQFAVIGL-GRFGGSIVKELHRM-GHEVLAVDINEE----KVNAYA-SYATHAVIANATEENELLSLGIRNFEYVIVA   77 (144)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHT-TCCCEEEESCHH----HHHTTT-TTCSEEEECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHC-CCEEEEEeCCHH----HHHHHH-HhCCEEEEeCCCCHHHHHhcCCCCCCEEEEC
Confidence            5678999997 99999999999998 788988887432    222221 123456677876642      3469999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEeccee
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEV  150 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~  150 (190)
                      ++..            .+.|.    .+.+.+++.+. ++|..++...
T Consensus        78 ~~~~------------~~~~~----~~~~~~~~~~~~~ii~~~~~~~  108 (144)
T 2hmt_A           78 IGAN------------IQAST----LTTLLLKELDIPNIWVKAQNYY  108 (144)
T ss_dssp             CCSC------------HHHHH----HHHHHHHHTTCSEEEEECCSHH
T ss_pred             CCCc------------hHHHH----HHHHHHHHcCCCeEEEEeCCHH
Confidence            8521            11222    24555666665 6666555433

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.22  E-value=2.3e-05  Score=53.63  Aligned_cols=69  Identities=20%  Similarity=0.244  Sum_probs=49.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------cCCcCEEEEcc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~~d~vi~~a  105 (190)
                      +|+|+|+|+ |.+|+.+++.|.+. +++|.+++|+.+    ....+.....+..+.+|..+..      ..++|+||++.
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~-g~~v~~~d~~~~----~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~   77 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEK-GHDIVLIDIDKD----ICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT   77 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESCHH----HHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCeEEEEECCHH----HHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence            478999985 99999999999998 789999988533    2222221124566677776542      35799999997


Q ss_pred             C
Q 029640          106 C  106 (190)
Q Consensus       106 g  106 (190)
                      +
T Consensus        78 ~   78 (140)
T 1lss_A           78 G   78 (140)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.20  E-value=2.7e-06  Score=68.35  Aligned_cols=89  Identities=17%  Similarity=0.156  Sum_probs=62.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~a  105 (190)
                      ..|||+|.|+ |++|+.+++.|.+.  ++|.+.+++.+.    +...  ...+..+..|+.|.+     ..++|+||+++
T Consensus        15 ~~mkilvlGa-G~vG~~~~~~L~~~--~~v~~~~~~~~~----~~~~--~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~   85 (365)
T 3abi_A           15 RHMKVLILGA-GNIGRAIAWDLKDE--FDVYIGDVNNEN----LEKV--KEFATPLKVDASNFDKLVEVMKEFELVIGAL   85 (365)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTT--SEEEEEESCHHH----HHHH--TTTSEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CccEEEEECC-CHHHHHHHHHHhcC--CCeEEEEcCHHH----HHHH--hccCCcEEEecCCHHHHHHHHhCCCEEEEec
Confidence            3478999997 99999999998664  788888875332    2222  235677888998764     35799999998


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEe
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS  146 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vS  146 (190)
                      ++..                  ...++++|.+.+++++=+|
T Consensus        86 p~~~------------------~~~v~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           86 PGFL------------------GFKSIKAAIKSKVDMVDVS  108 (365)
T ss_dssp             CGGG------------------HHHHHHHHHHHTCEEEECC
T ss_pred             CCcc------------------cchHHHHHHhcCcceEeee
Confidence            5321                  1357778888877766443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.18  E-value=1.2e-05  Score=55.54  Aligned_cols=69  Identities=20%  Similarity=0.247  Sum_probs=52.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------cCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~~d~vi~~  104 (190)
                      .+++++|+|+ |.+|+.+++.|.+. |++|.+++++++    ....+.. ..+.++.+|..++.      ..++|+||.+
T Consensus         5 ~~~~v~I~G~-G~iG~~la~~L~~~-g~~V~~id~~~~----~~~~~~~-~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            5 GRYEYIVIGS-EAAGVGLVRELTAA-GKKVLAVDKSKE----KIELLED-EGFDAVIADPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHT-TCCEEEEESCHH----HHHHHHH-TTCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHC-CCeEEEEECCHH----HHHHHHH-CCCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence            4578999995 99999999999999 899999988533    2322222 25778889998864      2468999988


Q ss_pred             cC
Q 029640          105 AC  106 (190)
Q Consensus       105 ag  106 (190)
                      .+
T Consensus        78 ~~   79 (141)
T 3llv_A           78 GS   79 (141)
T ss_dssp             CS
T ss_pred             cC
Confidence            74

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=98.15  E-value=1.8e-06  Score=69.14  Aligned_cols=99  Identities=10%  Similarity=0.109  Sum_probs=60.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcC-----CCeEEEEcC-CCCCC-hhh-hhhhhcCCceEEEeccccccccCCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENE-----KNEVIVVDN-YFTGS-KDN-LRKWIGHPRFELIRHDVTEPLLIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~-----~~~v~~~~r-~~~~~-~~~-~~~~~~~~~~~~~~~D~~~~~~~~~d~v  101 (190)
                      |++++|.|.||+|++|+.+++.|++++     ..++..+.+ +.... ... .+.+.....+.+...|  .....++|+|
T Consensus         7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~--~~~~~~~DvV   84 (352)
T 2nqt_A            7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTE--AAVLGGHDAV   84 (352)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECC--HHHHTTCSEE
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCC--HHHhcCCCEE
Confidence            345799999999999999999999884     346666643 22211 111 0111110122222222  2234489999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      |.|.|...                  +..++..+ +.++++|-.|+..
T Consensus        85 f~alg~~~------------------s~~~~~~~-~~G~~vIDlSa~~  113 (352)
T 2nqt_A           85 FLALPHGH------------------SAVLAQQL-SPETLIIDCGADF  113 (352)
T ss_dssp             EECCTTSC------------------CHHHHHHS-CTTSEEEECSSTT
T ss_pred             EECCCCcc------------------hHHHHHHH-hCCCEEEEECCCc
Confidence            99987432                  23466666 6778999999865

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=98.12  E-value=1.2e-05  Score=64.85  Aligned_cols=77  Identities=17%  Similarity=-0.021  Sum_probs=56.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHH-hcCCCeEEEEcCCCCCChhh-----------hhhh--hcCCceEEEeccccccc--
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLM-ENEKNEVIVVDNYFTGSKDN-----------LRKW--IGHPRFELIRHDVTEPL--   94 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~-~~~~~~v~~~~r~~~~~~~~-----------~~~~--~~~~~~~~~~~D~~~~~--   94 (190)
                      ..|++||||+++.||.+.+..|+ .. |..++++.+..+.....           +.+.  ....+...+.+|+.+++  
T Consensus        49 ~pK~vLVtGaSsGiGlA~AialAf~~-GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i  127 (401)
T 4ggo_A           49 APKNVLVLGCSNGYGLASRITAAFGY-GAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIK  127 (401)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHH-CCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhhC-CCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHH
Confidence            46999999999999999999998 55 77777777655443321           1111  12357889999999864  


Q ss_pred             ----------cCCcCEEEEccCCC
Q 029640           95 ----------LIEVDQIYHLACPA  108 (190)
Q Consensus        95 ----------~~~~d~vi~~ag~~  108 (190)
                                +.++|+|||+++..
T Consensus       128 ~~vi~~i~~~~G~IDiLVhS~A~~  151 (401)
T 4ggo_A          128 AQVIEEAKKKGIKFDLIVYSLASP  151 (401)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCCS
T ss_pred             HHHHHHHHHhcCCCCEEEEecccc
Confidence                      34699999999854

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.11  E-value=7.7e-06  Score=65.22  Aligned_cols=115  Identities=12%  Similarity=0.146  Sum_probs=72.4

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhc----CCceEEEeccccccccCCcCEEEE
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLLIEVDQIYH  103 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~d~vi~  103 (190)
                      ++.++||.|+|++|++|..++..++..+. .++.+++...+.......++.+    ..++.+ ..|. .+.+.+.|+||.
T Consensus         5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t~d~-~~al~dADvVvi   82 (343)
T 3fi9_A            5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-TSDI-KEALTDAKYIVS   82 (343)
T ss_dssp             CSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-ESCH-HHHHTTEEEEEE
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-cCCH-HHHhCCCCEEEE
Confidence            45778999999999999999999998832 5899988743322211111211    112222 1121 123578999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--e-EEEEec
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--R-ILLTST  147 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~-~i~vSS  147 (190)
                      +||...  ...+...+.+..|......+++.+.+...  . ++.+|.
T Consensus        83 taG~p~--kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN  127 (343)
T 3fi9_A           83 SGGAPR--KEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN  127 (343)
T ss_dssp             CCC---------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             ccCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence            998532  22334556789999999999998887653  3 556654

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.09  E-value=1.1e-05  Score=66.95  Aligned_cols=108  Identities=17%  Similarity=0.194  Sum_probs=66.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~  104 (190)
                      +++++|+|+|+ |++|+.+++.|++.++.+|.+.+|+.+...    .+.....+..+.+|+.+..     +.++|+|||+
T Consensus        21 l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~----~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~   95 (467)
T 2axq_A           21 HMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQ----ALAKPSGSKAISLDVTDDSALDKVLADNDVVISL   95 (467)
T ss_dssp             --CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHH----HHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEEC
T ss_pred             CCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHH----HHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEEC
Confidence            36789999996 999999999999985678999988643322    2211124566778887642     2479999999


Q ss_pred             cCCCCCcc-cc---cCchhHHHHHH--HHHHHHHHHHHHcCCeE
Q 029640          105 ACPASPIF-YK---YNPVKTIKTNV--IGTLNMLGLAKRVGARI  142 (190)
Q Consensus       105 ag~~~~~~-~~---~~~~~~~~~n~--~~~~~l~~~~~~~~~~~  142 (190)
                      ++...... ..   .....++++++  ..+..+++.+++.++++
T Consensus        96 tp~~~~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv~~  139 (467)
T 2axq_A           96 IPYTFHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGITV  139 (467)
T ss_dssp             SCGGGHHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTCEE
T ss_pred             CchhhhHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCCEE
Confidence            97532100 00   00000111121  23467888888887653

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=98.02  E-value=7.6e-05  Score=58.72  Aligned_cols=112  Identities=18%  Similarity=0.095  Sum_probs=74.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhc-C-CCeEEEEcCCCCCChhhhhhhhcCC-ceEEE--eccccccccCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMEN-E-KNEVIVVDNYFTGSKDNLRKWIGHP-RFELI--RHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~-~-~~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~--~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      |||.|+||+|.+|..++..|..+ + ..++.++++.. ...-...++.+.. .....  ..+-...++.+.|+||..||.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence            58999999999999999999875 2 35788888765 2222222332221 12221  112223456789999999985


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ..  ...+...+.++.|..-...+.+.+.++..  .++.+|.
T Consensus        80 ~r--kpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN  119 (312)
T 3hhp_A           80 AR--KPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN  119 (312)
T ss_dssp             SC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            42  22345667889999999999988877653  5666654

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=98.01  E-value=1.9e-05  Score=63.05  Aligned_cols=96  Identities=10%  Similarity=0.096  Sum_probs=58.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhh----hhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK----WIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      ++++|.|.|++|++|+.+++.|.++...++..+.+..... ..+..    +.....+.+.  ++.  ...++|+||.+.+
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g-~~~~~~~~~~~g~~~~~~~--~~~--~~~~vDvV~~a~g   77 (345)
T 2ozp_A            3 GKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAG-EPVHFVHPNLRGRTNLKFV--PPE--KLEPADILVLALP   77 (345)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTT-SBGGGTCGGGTTTCCCBCB--CGG--GCCCCSEEEECCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhC-chhHHhCchhcCccccccc--chh--HhcCCCEEEEcCC
Confidence            3578999999999999999999988555766665532221 11111    1110122222  221  2467999999986


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      ...                  ...++..+.+.++++|-.|+..
T Consensus        78 ~~~------------------s~~~a~~~~~aG~~VId~Sa~~  102 (345)
T 2ozp_A           78 HGV------------------FAREFDRYSALAPVLVDLSADF  102 (345)
T ss_dssp             TTH------------------HHHTHHHHHTTCSEEEECSSTT
T ss_pred             cHH------------------HHHHHHHHHHCCCEEEEcCccc
Confidence            321                  2345556667788888888743

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.00  E-value=7.2e-05  Score=59.21  Aligned_cols=112  Identities=13%  Similarity=0.115  Sum_probs=73.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhh---cC--CceEEEeccccccccCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWI---GH--PRFELIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~---~~--~~~~~~~~D~~~~~~~~~d~vi~~  104 (190)
                      ..++|.|+|+ |.+|..++..|+..+. .++.+++++.+.......++.   +.  ..+.....|.  ..+.+.|+||.+
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~--~a~~~aDvVvi~   80 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTY--EDCKDADIVCIC   80 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECG--GGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcH--HHhCCCCEEEEe
Confidence            3578999995 9999999999999832 389998875432222111121   11  2334333332  456789999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      +|...  ...+...+.+..|......+++.+.+...  .++.+|.
T Consensus        81 ag~p~--kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN  123 (326)
T 3pqe_A           81 AGANQ--KPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN  123 (326)
T ss_dssp             CSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             cccCC--CCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence            98532  22234556788999999999988877653  5665554

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.93  E-value=0.0003  Score=49.28  Aligned_cols=70  Identities=17%  Similarity=0.180  Sum_probs=50.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------cCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~~d~vi~~  104 (190)
                      .+++|+|+| .|.+|+.+++.|.+. |++|++++|+++...    .+....+...+..|..+..      ..++|+||.+
T Consensus        18 ~~~~v~IiG-~G~iG~~la~~L~~~-g~~V~vid~~~~~~~----~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~   91 (155)
T 2g1u_A           18 KSKYIVIFG-CGRLGSLIANLASSS-GHSVVVVDKNEYAFH----RLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAF   91 (155)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCGGGGG----GSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEEC
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHhC-CCeEEEEECCHHHHH----HHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEE
Confidence            568999999 599999999999998 789999988644322    2211224556667765432      3468999998


Q ss_pred             cC
Q 029640          105 AC  106 (190)
Q Consensus       105 ag  106 (190)
                      .+
T Consensus        92 ~~   93 (155)
T 2g1u_A           92 TN   93 (155)
T ss_dssp             SS
T ss_pred             eC
Confidence            75

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.89  E-value=4.4e-05  Score=60.71  Aligned_cols=98  Identities=13%  Similarity=0.189  Sum_probs=60.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC--CCChhhhhh----hhcCCceEEEec-ccccccc-CCcCEEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF--TGSKDNLRK----WIGHPRFELIRH-DVTEPLL-IEVDQIYH  103 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~--~~~~~~~~~----~~~~~~~~~~~~-D~~~~~~-~~~d~vi~  103 (190)
                      |++|.|.|++|++|+.+++.|.++...++..+.++.  +.....+.+    +.+.....+... |.  ..+ .++|+||.
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~--~~~~~~~Dvvf~   81 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDI--SEFSPGVDVVFL   81 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSG--GGTCTTCSEEEE
T ss_pred             ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCH--HHHhcCCCEEEE
Confidence            478999999999999999999987566766664432  111111221    111112233222 22  233 68999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      |.+...                  +..++..+.+.+.++|=.|+..
T Consensus        82 a~p~~~------------------s~~~~~~~~~~g~~vIDlSa~f  109 (337)
T 3dr3_A           82 ATAHEV------------------SHDLAPQFLEAGCVVFDLSGAF  109 (337)
T ss_dssp             CSCHHH------------------HHHHHHHHHHTTCEEEECSSTT
T ss_pred             CCChHH------------------HHHHHHHHHHCCCEEEEcCCcc
Confidence            875211                  2345555667788999888854

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.88  E-value=0.00013  Score=57.61  Aligned_cols=111  Identities=13%  Similarity=0.058  Sum_probs=72.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhh-------cCCceEEEeccccccccCCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWI-------GHPRFELIRHDVTEPLLIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~d~v  101 (190)
                      |++++|.|+|+ |.+|..++..|+.. +. ++.+++++.+.......++.       ...++.. ..|.  +++.+.|+|
T Consensus         5 m~~~kI~viGa-G~vG~~~a~~l~~~-~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-t~d~--~a~~~aDiV   79 (324)
T 3gvi_A            5 MARNKIALIGS-GMIGGTLAHLAGLK-ELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG-ANDY--AAIEGADVV   79 (324)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHHT-TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESSG--GGGTTCSEE
T ss_pred             CcCCEEEEECC-CHHHHHHHHHHHhC-CCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE-eCCH--HHHCCCCEE
Confidence            35679999996 99999999999998 66 89999887654321111111       1122322 2343  567789999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      |.++|....  ......+.+..|+.....+++.+.+..-  .++.+|.
T Consensus        80 Iiaag~p~k--~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           80 IVTAGVPRK--PGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             EECCSCCCC-------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EEccCcCCC--CCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            999985432  2233446678898888888888877653  5666664

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=97.87  E-value=8.5e-05  Score=59.17  Aligned_cols=94  Identities=16%  Similarity=0.174  Sum_probs=56.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhc--CCCeEEEE-cCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVV-DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~--~~~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      .++|+|.||+|++|+.+++.|.++  ...++..+ +++.....-.    .....+.+...|.  ....++|+||.+.|..
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~----~~g~~i~~~~~~~--~~~~~~DvV~~a~g~~   79 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMG----FAESSLRVGDVDS--FDFSSVGLAFFAAAAE   79 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEE----ETTEEEECEEGGG--CCGGGCSEEEECSCHH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccc----cCCcceEEecCCH--HHhcCCCEEEEcCCcH
Confidence            468999999999999999999965  23344444 3332221100    1111222222232  2345799999998621


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                                        ....++..+.+.+.++|.+|+.+
T Consensus        80 ------------------~s~~~a~~~~~aG~kvId~Sa~~  102 (340)
T 2hjs_A           80 ------------------VSRAHAERARAAGCSVIDLSGAL  102 (340)
T ss_dssp             ------------------HHHHHHHHHHHTTCEEEETTCTT
T ss_pred             ------------------HHHHHHHHHHHCCCEEEEeCCCC
Confidence                              12356666677788888777754

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.86  E-value=0.00028  Score=55.72  Aligned_cols=112  Identities=14%  Similarity=0.078  Sum_probs=73.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcC-----CceEEE-eccccccccCCcCEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGH-----PRFELI-RHDVTEPLLIEVDQIY  102 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~-~~D~~~~~~~~~d~vi  102 (190)
                      |++++|.|+| +|.+|..++..|+.. +. ++.+++++.+.......++.+.     ...... ..|  .+++.+.|+||
T Consensus         3 m~~~kI~iiG-aG~vG~~~a~~l~~~-~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d--~~a~~~aDvVI   78 (321)
T 3p7m_A            3 MARKKITLVG-AGNIGGTLAHLALIK-QLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND--YKDLENSDVVI   78 (321)
T ss_dssp             CCCCEEEEEC-CSHHHHHHHHHHHHT-TCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC--GGGGTTCSEEE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHhC-CCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC--HHHHCCCCEEE
Confidence            3568999999 699999999999988 55 8999888665433222222111     122222 133  24667899999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      .++|....  ......+.+..|+.....+++.+.+..-  .++.+|.
T Consensus        79 i~ag~p~k--~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  123 (321)
T 3p7m_A           79 VTAGVPRK--PGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN  123 (321)
T ss_dssp             ECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EcCCcCCC--CCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            99985432  2234556788899888888888876652  5555554

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.85  E-value=0.00027  Score=55.51  Aligned_cols=110  Identities=14%  Similarity=0.123  Sum_probs=67.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhc-----CCceEEEe-ccccccccCCcCEEEEc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~D~~~~~~~~~d~vi~~  104 (190)
                      +++|.|+|+ |.+|..++..|+.. ++ +|.+++++.+.......++..     ........ .|.  .++.+.|+||.+
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~-g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~--~a~~~aD~Vi~a   77 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAK-ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY--ADTANSDVIVVT   77 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG--GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH--HHHCCCCEEEEc
Confidence            368999997 99999999999988 54 788888765433322222221     11222222 444  456789999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEec
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST  147 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS  147 (190)
                      +|.....  ..........|......+.+.+.+... .+|++.|
T Consensus        78 ~g~p~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t  119 (309)
T 1ur5_A           78 SGAPRKP--GMSREDLIKVNADITRACISQAAPLSPNAVIIMVN  119 (309)
T ss_dssp             CCC----------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred             CCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence            9854321  122334567788888888888877653 3443433

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.83  E-value=0.0001  Score=57.46  Aligned_cols=109  Identities=17%  Similarity=0.101  Sum_probs=73.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCC--eEEEEcCCCCCChhh---hhhhhc--CCceEEEe-ccccccccCCcCEEEEc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDN---LRKWIG--HPRFELIR-HDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~--~v~~~~r~~~~~~~~---~~~~~~--~~~~~~~~-~D~~~~~~~~~d~vi~~  104 (190)
                      |+|.|+|+ |.+|..++..|+.. +.  ++.+.+++.+.....   +.+...  ........ .|  .+++.+.|+||.+
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~-~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d--~~a~~~aDiVVia   76 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLN-LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD--YSLLKGSEIIVVT   76 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC--GGGGTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhC-CCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC--HHHhCCCCEEEEC
Confidence            68999997 99999999999998 55  899998865433211   111110  11222222 34  4567789999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      +|....  ......+.+..|..-...+.+.+.+.+-  .++.+|.
T Consensus        77 ag~~~k--pG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN  119 (294)
T 1oju_A           77 AGLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             CCCCCC--SSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             CCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence            985432  2234566788899999999988887753  6666664

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.82  E-value=6.6e-05  Score=52.58  Aligned_cols=73  Identities=15%  Similarity=0.213  Sum_probs=52.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------cCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~~d~vi~~  104 (190)
                      ..++++|+| .|.+|+.+++.|.+. +++|.++.++++.....+.... ..++.++.+|..+..      ..+.|+||.+
T Consensus         2 ~~~~vlI~G-~G~vG~~la~~L~~~-g~~V~vid~~~~~~~~~~~~~~-~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   78 (153)
T 1id1_A            2 RKDHFIVCG-HSILAINTILQLNQR-GQNVTVISNLPEDDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGIDRCRAILAL   78 (153)
T ss_dssp             CCSCEEEEC-CSHHHHHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCChHHHHHHHHhh-cCCCeEEEcCCCCHHHHHHcChhhCCEEEEe
Confidence            457899999 599999999999998 8999999885321111222221 235788889988753      3568999888


Q ss_pred             cC
Q 029640          105 AC  106 (190)
Q Consensus       105 ag  106 (190)
                      .+
T Consensus        79 ~~   80 (153)
T 1id1_A           79 SD   80 (153)
T ss_dssp             SS
T ss_pred             cC
Confidence            74

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.81  E-value=4.1e-05  Score=58.98  Aligned_cols=76  Identities=14%  Similarity=0.171  Sum_probs=49.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      +.+++++|+|+ |.+|+.++..|++. |.+|++..|+.+........+.....+..  .|+.+....++|+||++++...
T Consensus       117 l~~k~vlViGa-Gg~g~a~a~~L~~~-G~~V~v~~R~~~~~~~la~~~~~~~~~~~--~~~~~~~~~~~DivVn~t~~~~  192 (271)
T 1nyt_A          117 RPGLRILLIGA-GGASRGVLLPLLSL-DCAVTITNRTVSRAEELAKLFAHTGSIQA--LSMDELEGHEFDLIINATSSGI  192 (271)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSSHHHHHHHHHHTGGGSSEEE--CCSGGGTTCCCSEEEECCSCGG
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHhhccCCeeE--ecHHHhccCCCCEEEECCCCCC
Confidence            46799999997 78999999999999 68999998865433322222211112222  3321111047999999998543

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.81  E-value=0.00017  Score=57.46  Aligned_cols=115  Identities=15%  Similarity=0.035  Sum_probs=72.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC------CeEEEEcCCCCCC-----hhhhhhhhcCCceEEEeccccccccCCcC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK------NEVIVVDNYFTGS-----KDNLRKWIGHPRFELIRHDVTEPLLIEVD   99 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~------~~v~~~~r~~~~~-----~~~~~~~~~~~~~~~~~~D~~~~~~~~~d   99 (190)
                      ...||.|+||+|.||+.++..|+...-      .++.+++..+...     ...+.+..-.........+-...++.+.|
T Consensus        23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~ad  102 (345)
T 4h7p_A           23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVA  102 (345)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCCC
Confidence            446999999999999999998887521      2577776532211     11111111111122222222234577899


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC---CeEEEEec
Q 029640          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTST  147 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~vSS  147 (190)
                      +||-.||...  ...+...+.++.|..-...+.+.+.+..   .+++.+|.
T Consensus       103 vVvi~aG~pr--kpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsN  151 (345)
T 4h7p_A          103 IAIMCGAFPR--KAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGN  151 (345)
T ss_dssp             EEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             EEEECCCCCC--CCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCC
Confidence            9999998543  2345667889999999999998887642   36666765

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.79  E-value=9.9e-05  Score=58.40  Aligned_cols=112  Identities=12%  Similarity=0.119  Sum_probs=62.8

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC----CceEEEeccccccccCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      .+++|.|+|+ |.+|..++..|+..+- .++.++++..+...-...++.+.    ..+.....|  ..++.+.|+||.+|
T Consensus         8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~--~~a~~~aDiVvi~a   84 (326)
T 3vku_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE--YSDAKDADLVVITA   84 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC--GGGGTTCSEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc--HHHhcCCCEEEECC
Confidence            5689999995 9999999999999833 38888887543222111111111    133333222  24567899999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      |...  ...+...+.++.|..-...+.+.+.++.-  .++.+|.
T Consensus        85 g~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN  126 (326)
T 3vku_A           85 GAPQ--KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             CCC------------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred             CCCC--CCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence            8532  12234456678888888888888877653  5555554

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.77  E-value=0.00064  Score=53.57  Aligned_cols=108  Identities=15%  Similarity=0.145  Sum_probs=67.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCC--eEEEEcCCCCCChhhhhhhhcC----CceEEEeccccccccCCcCEEEEcc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      .++|.|+|+ |++|..++..|+.. +.  ++.+++.+.+.......++.+.    ..+.....|  ..++.+.|+||.++
T Consensus         7 ~~KI~IiGa-G~vG~~~a~~l~~~-~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~--~~a~~~aDvVii~~   82 (318)
T 1y6j_A            7 RSKVAIIGA-GFVGASAAFTMALR-QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD--YSDVKDCDVIVVTA   82 (318)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHT-TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C--GGGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECC--HHHhCCCCEEEEcC
Confidence            478999996 99999999999998 54  8999988765544333333221    133333222  34567899999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEE
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLT  145 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~v  145 (190)
                      |....  ......+.+..|+.....+++.+.+...  .+|.+
T Consensus        83 g~p~k--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~  122 (318)
T 1y6j_A           83 GANRK--PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVV  122 (318)
T ss_dssp             CC--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEEC
T ss_pred             CCCCC--CCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEe
Confidence            85431  1223445678888888888888876542  44444

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=97.75  E-value=0.00023  Score=55.54  Aligned_cols=110  Identities=17%  Similarity=0.086  Sum_probs=73.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhc-----CCceEEEe-ccccccccCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~D~~~~~~~~~d~vi~~a  105 (190)
                      |||.|+| .|.||..++..|+.++- .++.+++.......-...++.+     ........ .|.  +++.+.|+||-.|
T Consensus         1 MKV~IiG-aG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~--~~~~~aDvVvitA   77 (294)
T 2x0j_A            1 MKLGFVG-AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY--SLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCG--GGGTTCSEEEECC
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCH--HHhCCCCEEEEec
Confidence            6899999 59999999999988843 5788887754322222222211     11122222 232  3567899999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      |...  ...+...+.+..|..-...+.+.+.++.-  .++.+|.
T Consensus        78 G~pr--kpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN  119 (294)
T 2x0j_A           78 GLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             CCCC--CSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             CCCC--CCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence            8543  23456778899999999999998887753  5566655

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.74  E-value=0.0001  Score=53.72  Aligned_cols=37  Identities=14%  Similarity=0.113  Sum_probs=32.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ..+++|+|+||+|.||..+++.+... |.+|++++|+.
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~   73 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSD   73 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSH
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCH
Confidence            36789999999999999999999998 78999988754

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=97.73  E-value=0.00011  Score=58.78  Aligned_cols=96  Identities=11%  Similarity=0.180  Sum_probs=57.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEc--CCCCCChhhhhhhhcC----------CceEEEeccccccccCCc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD--NYFTGSKDNLRKWIGH----------PRFELIRHDVTEPLLIEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~--r~~~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~   98 (190)
                      ++++|.|.|++|++|+.+++.|.++...++..+.  ++....  .+....+.          ..+.+...|.  ....++
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~v   78 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGK--KYKDAVKWIEQGDIPEEVQDLPIVSTNY--EDHKDV   78 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTS--BHHHHCCCCSSSSCCHHHHTCBEECSSG--GGGTTC
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCC--CHHHhcCcccccccccCCceeEEeeCCH--HHhcCC
Confidence            4578999999999999999999887555776664  222211  11111100          1222322232  223579


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecc
Q 029640           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS  148 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~  148 (190)
                      |+||.|.+..                  ....++..+.+.++++|-.|+.
T Consensus        79 DvVf~atp~~------------------~s~~~a~~~~~aG~~VId~s~~  110 (350)
T 2ep5_A           79 DVVLSALPNE------------------LAESIELELVKNGKIVVSNASP  110 (350)
T ss_dssp             SEEEECCCHH------------------HHHHHHHHHHHTTCEEEECSST
T ss_pred             CEEEECCChH------------------HHHHHHHHHHHCCCEEEECCcc
Confidence            9999887521                  1344666777778887766653

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.71  E-value=0.00017  Score=57.70  Aligned_cols=98  Identities=13%  Similarity=0.151  Sum_probs=56.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC----------CceEEEeccccccccC-CcCE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----------PRFELIRHDVTEPLLI-EVDQ  100 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~-~~d~  100 (190)
                      +++|.|.||+|++|+.+++.|.++...++..+.++.......+....+.          ..+.+...|..+ ... ++|+
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Dv   86 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKH-EEFEDVDI   86 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTS-GGGTTCCE
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHH-HhcCCCCE
Confidence            3689999999999999999998875567776654222111112111100          011122223322 223 7999


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecc
Q 029640          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS  148 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~  148 (190)
                      ||.+.+..                  ....++..+.+.++++|-.|+.
T Consensus        87 V~~atp~~------------------~~~~~a~~~~~aG~~VId~s~~  116 (354)
T 1ys4_A           87 VFSALPSD------------------LAKKFEPEFAKEGKLIFSNASA  116 (354)
T ss_dssp             EEECCCHH------------------HHHHHHHHHHHTTCEEEECCST
T ss_pred             EEECCCch------------------HHHHHHHHHHHCCCEEEECCch
Confidence            99998521                  1233555556677786666653

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=97.71  E-value=0.00032  Score=55.76  Aligned_cols=95  Identities=12%  Similarity=0.157  Sum_probs=58.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhc--CCCeEEEEcC-CCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDN-YFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~--~~~~v~~~~r-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      ++++|.|.|++|++|+.+++.|.++  ...++..+.. +.....-.    .....+.+...|.  ....++|+||.|.|.
T Consensus         2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~----~~~~~i~~~~~~~--~~~~~vDvVf~a~g~   75 (336)
T 2r00_A            2 QQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYR----FNGKTVRVQNVEE--FDWSQVHIALFSAGG   75 (336)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEE----ETTEEEEEEEGGG--CCGGGCSEEEECSCH
T ss_pred             CccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCcee----ecCceeEEecCCh--HHhcCCCEEEECCCc
Confidence            3578999999999999999999987  3345555542 22211111    1111333333332  233579999999862


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      ..                  +...+..+.+.++++|-.|+.+
T Consensus        76 ~~------------------s~~~a~~~~~~G~~vId~s~~~   99 (336)
T 2r00_A           76 EL------------------SAKWAPIAAEAGVVVIDNTSHF   99 (336)
T ss_dssp             HH------------------HHHHHHHHHHTTCEEEECSSTT
T ss_pred             hH------------------HHHHHHHHHHcCCEEEEcCCcc
Confidence            21                  2345556667788888888754

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.70  E-value=0.00058  Score=53.71  Aligned_cols=111  Identities=12%  Similarity=0.018  Sum_probs=70.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhc-----CCceEEEeccccccccCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      |+|.|+|+ |.+|..++..|+..+- .++.+++++.....-...++.+     .........|. ..++.+.|+||.++|
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~-~~a~~~aDvVii~ag   78 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTND-YGPTEDSDVCIITAG   78 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESS-SGGGTTCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCC-HHHhCCCCEEEECCC
Confidence            68999995 9999999999999832 3899998866443321112211     11222221121 345678999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ...  ...+...+.+..|+.-...+.+.+.++.-  .++.+|.
T Consensus        79 ~~~--kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  119 (314)
T 3nep_X           79 LPR--SPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN  119 (314)
T ss_dssp             C---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred             CCC--CCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence            542  22334567789999999999988887753  5666664

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.68  E-value=0.00017  Score=56.83  Aligned_cols=110  Identities=15%  Similarity=0.078  Sum_probs=72.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCC--CCChhhhhhhh-------cCCceEEEeccccccccCCcCE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYF--TGSKDNLRKWI-------GHPRFELIRHDVTEPLLIEVDQ  100 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~--~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~d~  100 (190)
                      ..++|.|+|+ |.+|..++..|+.. +. +|.++++++  ........++.       ...++... .|  ...+.++|+
T Consensus         7 ~~~kv~ViGa-G~vG~~ia~~l~~~-g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t-~d--~~a~~~aDv   81 (315)
T 3tl2_A            7 KRKKVSVIGA-GFTGATTAFLLAQK-ELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT-SD--YADTADSDV   81 (315)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHT-TCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE-SC--GGGGTTCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhC-CCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc-CC--HHHhCCCCE
Confidence            4578999995 99999999999998 67 899998863  11111111111       11222221 22  245678999


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ||.++|....  ......+.+..|......+.+.+.++..  .++.+|.
T Consensus        82 VIiaag~p~k--pg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN  128 (315)
T 3tl2_A           82 VVITAGIARK--PGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN  128 (315)
T ss_dssp             EEECCSCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EEEeCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            9999985432  2334567788999988899888877653  5666664

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.68  E-value=0.00011  Score=58.92  Aligned_cols=97  Identities=14%  Similarity=0.222  Sum_probs=56.8

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCce--EEEeccccccccCCcCEEEEccC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRF--ELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~--~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +.++|.|.||+|++|+.+++.|.++...++..+.+..... ..+....+  ...+  +....+  +....++|+||.|.+
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g-~~~~~~~~~~~~~v~~dl~~~~--~~~~~~vDvVf~atp   91 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAG-QSMESVFPHLRAQKLPTLVSVK--DADFSTVDAVFCCLP   91 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTT-SCHHHHCGGGTTSCCCCCBCGG--GCCGGGCSEEEECCC
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcC-CCHHHhCchhcCcccccceecc--hhHhcCCCEEEEcCC
Confidence            4468999999999999999999998545777765532211 11111100  0010  110011  222347999999986


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      ...                  +...+..+ +.++++|-.|+..
T Consensus        92 ~~~------------------s~~~a~~~-~aG~~VId~sa~~  115 (359)
T 1xyg_A           92 HGT------------------TQEIIKEL-PTALKIVDLSADF  115 (359)
T ss_dssp             TTT------------------HHHHHHTS-CTTCEEEECSSTT
T ss_pred             chh------------------HHHHHHHH-hCCCEEEECCccc
Confidence            432                  13345555 6677888777743

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=97.66  E-value=8.1e-05  Score=60.08  Aligned_cols=99  Identities=13%  Similarity=0.181  Sum_probs=58.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEE--cCCCCCCh-hhhhhhhcC-------CceEEEecccccc-ccCCcC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV--DNYFTGSK-DNLRKWIGH-------PRFELIRHDVTEP-LLIEVD   99 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~--~r~~~~~~-~~~~~~~~~-------~~~~~~~~D~~~~-~~~~~d   99 (190)
                      ++++|.|.|++|++|..+++.|.++...++..+  +++..... .....+...       ....+.  ++... .+.++|
T Consensus        18 ~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~--~~~~~~~~~~~D   95 (381)
T 3hsk_A           18 SVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQ--ECKPEGNFLECD   95 (381)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCE--ESSSCTTGGGCS
T ss_pred             CccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEE--eCchhhhcccCC
Confidence            457899999999999999998888754566443  34333222 111001000       011222  22222 356899


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      +||.|.+...                  +..+...+.+.+.++|=.|+..
T Consensus        96 vvf~alp~~~------------------s~~~~~~~~~~G~~VIDlSa~f  127 (381)
T 3hsk_A           96 VVFSGLDADV------------------AGDIEKSFVEAGLAVVSNAKNY  127 (381)
T ss_dssp             EEEECCCHHH------------------HHHHHHHHHHTTCEEEECCSTT
T ss_pred             EEEECCChhH------------------HHHHHHHHHhCCCEEEEcCCcc
Confidence            9999985211                  2345556667788888888754

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.64  E-value=0.00048  Score=54.57  Aligned_cols=112  Identities=13%  Similarity=0.121  Sum_probs=73.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC----CceEEE-eccccccccCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELI-RHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~-~~D~~~~~~~~~d~vi~~  104 (190)
                      ..++|.|+|+ |.+|..++..|+..+. .++.+++++.+.......++.+.    ...... ..|.  .++.+.|+||.+
T Consensus        18 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~--~~~~~aDiVvi~   94 (331)
T 4aj2_A           18 PQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY--SVTANSKLVIIT   94 (331)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG--GGGTTEEEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH--HHhCCCCEEEEc
Confidence            5689999996 9999999999999832 38888887543222211122111    111222 2343  257789999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ||...  ...+...+.++.|..-...+.+.+.++.-  .++.+|.
T Consensus        95 aG~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN  137 (331)
T 4aj2_A           95 AGARQ--QEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN  137 (331)
T ss_dssp             CSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             cCCCC--CCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            98543  22345667889999998888888877642  5666554

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.61  E-value=0.00023  Score=57.10  Aligned_cols=93  Identities=15%  Similarity=0.233  Sum_probs=55.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCC---eEEEE-cCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKN---EVIVV-DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~---~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      +++|.|.|++|++|..+++.|.++ ++   ++..+ +++.....-.   + ......+  -++....+.++|+||.|.+.
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~-~~p~~el~~~as~~saG~~~~---~-~~~~~~~--~~~~~~~~~~~Dvvf~a~~~   74 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEES-TLPIDKIRYLASARSAGKSLK---F-KDQDITI--EETTETAFEGVDIALFSAGS   74 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTC-CCCEEEEEEEECTTTTTCEEE---E-TTEEEEE--EECCTTTTTTCSEEEECSCH
T ss_pred             CcEEEEECCCChHHHHHHHHHhcC-CCCcEEEEEEEccccCCCcce---e-cCCCceE--eeCCHHHhcCCCEEEECCCh
Confidence            368999999999999999988887 33   33333 3322222111   1 0112222  22323345689999999852


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      ..                  +..++..+.+.+.++|=.|+..
T Consensus        75 ~~------------------s~~~a~~~~~~G~~vIDlSa~~   98 (366)
T 3pwk_A           75 ST------------------SAKYAPYAVKAGVVVVDNTSYF   98 (366)
T ss_dssp             HH------------------HHHHHHHHHHTTCEEEECSSTT
T ss_pred             Hh------------------HHHHHHHHHHCCCEEEEcCCcc
Confidence            11                  2345555566788888888754

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.61  E-value=0.00013  Score=56.35  Aligned_cols=36  Identities=19%  Similarity=0.416  Sum_probs=28.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNY   66 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~   66 (190)
                      +.++|.|+|++|.+|+.+++.+.+..+.++... ++.
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~   40 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALERE   40 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCT
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            347899999999999999999987767777644 443

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=97.59  E-value=0.00073  Score=53.44  Aligned_cols=112  Identities=12%  Similarity=0.124  Sum_probs=70.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC----CceEEEeccccccccCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.++|.|+|+ |.+|..++..|+..+- .++.++++..+.......++.+.    ..+.... | ...++.+.|+||..+
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~-~~~a~~~aDvVii~a   84 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A-EYSDAKDADLVVITA   84 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C-CGGGGGGCSEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C-CHHHhCCCCEEEEcC
Confidence            4579999997 9999999999988732 37888887543332222222111    2333332 3 234577899999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      |....  ..+.....+..|+.....+++.+.++..  .+|.+|-
T Consensus        85 g~~~k--~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  126 (326)
T 2zqz_A           85 GAPQK--PGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             CCC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            85432  1233445678888888888887776642  5555543

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=97.58  E-value=0.00038  Score=55.43  Aligned_cols=94  Identities=17%  Similarity=0.108  Sum_probs=56.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcC--CCeEEEEc-CCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVD-NYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~--~~~v~~~~-r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +++|.|.|++|++|..+++.|.++.  ..++..+. ++.....-.   +.   ..+...-++....+.++|+||.|.+..
T Consensus         1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~---~~---~~~~~~~~~~~~~~~~~Dvvf~a~~~~   74 (344)
T 3tz6_A            1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLA---FR---GQEIEVEDAETADPSGLDIALFSAGSA   74 (344)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEE---ET---TEEEEEEETTTSCCTTCSEEEECSCHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCcee---ec---CCceEEEeCCHHHhccCCEEEECCChH
Confidence            4689999999999999999888872  22344443 333222211   11   112222233334556899999998621


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      .                  +..+...+.+.+.++|=.|+..
T Consensus        75 ~------------------s~~~a~~~~~~G~~vID~Sa~~   97 (344)
T 3tz6_A           75 M------------------SKVQAPRFAAAGVTVIDNSSAW   97 (344)
T ss_dssp             H------------------HHHHHHHHHHTTCEEEECSSTT
T ss_pred             H------------------HHHHHHHHHhCCCEEEECCCcc
Confidence            1                  2345555566788888888754

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=97.57  E-value=0.00068  Score=53.65  Aligned_cols=112  Identities=13%  Similarity=0.040  Sum_probs=72.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhc----CCceEEE-eccccccccCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG----HPRFELI-RHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~-~~D~~~~~~~~~d~vi~~  104 (190)
                      ..++|.|+|+ |.+|..++..|+..+- .++.+++++.+.......++.+    ....... ..|..  ++.+.|+||-+
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~--~~~daDiVIit   96 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS--VSAGSKLVVIT   96 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC--SCSSCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH--HhCCCCEEEEe
Confidence            4478999997 9999999999999832 3899988754322221111111    0111222 24543  37789999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ||....  ..+...+.+..|..-...+.+.+.+..-  .++.+|.
T Consensus        97 aG~p~k--pG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN  139 (330)
T 3ldh_A           97 AGARQQ--EGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE  139 (330)
T ss_dssp             CSCCCC--SSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCCCCC--CCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence            985432  2344556778888888888888877642  5666664

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=97.56  E-value=0.00014  Score=58.24  Aligned_cols=96  Identities=15%  Similarity=0.189  Sum_probs=57.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEc-CCCCCChhhhhhhhcC----------CceEEEeccccccccCCcCE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD-NYFTGSKDNLRKWIGH----------PRFELIRHDVTEPLLIEVDQ  100 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~-r~~~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~d~  100 (190)
                      ..+|.|.|++|++|..+++.|.++...++..+. ++.....  +....+.          ........|  ...+.++|+
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~--~~~~~p~~~~~~~~~~~~~~~v~~~~--~~~~~~vDv   82 (359)
T 4dpk_A            7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKP--YGEVVRWQTVGQVPKEIADMEIKPTD--PKLMDDVDI   82 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSB--HHHHCCCCSSSCCCHHHHTCBCEECC--GGGCTTCCE
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCC--hhHhcccccccccccccccceEEeCC--HHHhcCCCE
Confidence            468999999999999999988887545655543 3322221  2111100          011121122  223468999


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      ||.|.+...                  +..+...+.+.+.++|-.|+..
T Consensus        83 vf~a~p~~~------------------s~~~a~~~~~~G~~vIDlSa~~  113 (359)
T 4dpk_A           83 IFSPLPQGA------------------AGPVEEQFAKEGFPVISNSPDH  113 (359)
T ss_dssp             EEECCCTTT------------------HHHHHHHHHHTTCEEEECSSTT
T ss_pred             EEECCChHH------------------HHHHHHHHHHCCCEEEEcCCCc
Confidence            999986432                  2235555567788999888864

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=97.56  E-value=0.00014  Score=58.24  Aligned_cols=96  Identities=15%  Similarity=0.189  Sum_probs=57.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEc-CCCCCChhhhhhhhcC----------CceEEEeccccccccCCcCE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD-NYFTGSKDNLRKWIGH----------PRFELIRHDVTEPLLIEVDQ  100 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~-r~~~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~d~  100 (190)
                      ..+|.|.|++|++|..+++.|.++...++..+. ++.....  +....+.          ........|  ...+.++|+
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~--~~~~~p~~~~~~~~~~~~~~~v~~~~--~~~~~~vDv   82 (359)
T 4dpl_A            7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKP--YGEVVRWQTVGQVPKEIADMEIKPTD--PKLMDDVDI   82 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSB--HHHHCCCCSSSCCCHHHHTCBCEECC--GGGCTTCCE
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCC--hhHhcccccccccccccccceEEeCC--HHHhcCCCE
Confidence            468999999999999999988887545655543 3322221  2111100          011121122  223468999


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      ||.|.+...                  +..+...+.+.+.++|-.|+..
T Consensus        83 vf~a~p~~~------------------s~~~a~~~~~~G~~vIDlSa~~  113 (359)
T 4dpl_A           83 IFSPLPQGA------------------AGPVEEQFAKEGFPVISNSPDH  113 (359)
T ss_dssp             EEECCCTTT------------------HHHHHHHHHHTTCEEEECSSTT
T ss_pred             EEECCChHH------------------HHHHHHHHHHCCCEEEEcCCCc
Confidence            999986432                  2235555567788999888864

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.55  E-value=0.00022  Score=52.82  Aligned_cols=68  Identities=13%  Similarity=0.211  Sum_probs=50.7

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------cCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~~d~vi~~ag  106 (190)
                      |+|+|+| .|.+|+.+++.|.+. +++|.+++++++    ....+....++..+.+|.++..      ..+.|+||.+.+
T Consensus         1 M~iiIiG-~G~~G~~la~~L~~~-g~~v~vid~~~~----~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~   74 (218)
T 3l4b_C            1 MKVIIIG-GETTAYYLARSMLSR-KYGVVIINKDRE----LCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTP   74 (218)
T ss_dssp             CCEEEEC-CHHHHHHHHHHHHHT-TCCEEEEESCHH----HHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhC-CCeEEEEECCHH----HHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence            5799999 599999999999998 899999987433    3333222235678889998753      346898887753

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.54  E-value=0.00066  Score=53.50  Aligned_cols=112  Identities=12%  Similarity=0.118  Sum_probs=67.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC----CceEEEeccccccccCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.++|.|+|+ |.+|..++..|+..+- .++.++++..+.......++.+.    ..+.... | ...++.+.|+||..+
T Consensus         4 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~-~~~a~~~aDvVii~a   80 (318)
T 1ez4_A            4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G-EYSDCKDADLVVITA   80 (318)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C-CGGGGTTCSEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C-CHHHhCCCCEEEECC
Confidence            3478999997 9999999999998832 37888887543332222222111    2333332 3 234577899999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      |.....  .+...+.+..|+.....+++.+.+...  .++.+|-
T Consensus        81 g~~~~~--g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  122 (318)
T 1ez4_A           81 GAPQKP--GESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (318)
T ss_dssp             CC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             CCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            854321  223345577888888888888777642  5555543

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.54  E-value=0.0008  Score=52.81  Aligned_cols=110  Identities=14%  Similarity=0.070  Sum_probs=71.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC----CceEEEeccccccccCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      |||.|+|+ |.+|..++..|+..+- .++.++++..+.......++.+.    ..+.... + ..+++.+.|+||..+|.
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~-~~~a~~~aD~Vii~ag~   77 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-G-SYGDLEGARAVVLAAGV   77 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-C-CGGGGTTEEEEEECCCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-C-CHHHhCCCCEEEECCCC
Confidence            57999997 9999999999998832 58999888643332222222211    1233333 3 24567789999999985


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ...  ........+..|+.....+++.+.+...  .++.+|-
T Consensus        78 ~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (310)
T 2xxj_A           78 AQR--PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN  117 (310)
T ss_dssp             CCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCC--CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            432  1233445678888888888888877652  5665543

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.53  E-value=7.7e-05  Score=57.92  Aligned_cols=76  Identities=12%  Similarity=0.115  Sum_probs=48.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC--CceEEEecccc--ccccCCcCEEEEcc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH--PRFELIRHDVT--EPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~--~~~~~~~d~vi~~a  105 (190)
                      +.+++++|+|++ .+|+.++..|++. | +|++..|+.+........+...  ... .+.+|+.  .....++|+|||++
T Consensus       126 l~~k~vlV~GaG-giG~aia~~L~~~-G-~V~v~~r~~~~~~~l~~~~~~~~~~~~-~~~~d~~~~~~~~~~~DilVn~a  201 (287)
T 1nvt_A          126 VKDKNIVIYGAG-GAARAVAFELAKD-N-NIIIANRTVEKAEALAKEIAEKLNKKF-GEEVKFSGLDVDLDGVDIIINAT  201 (287)
T ss_dssp             CCSCEEEEECCS-HHHHHHHHHHTSS-S-EEEEECSSHHHHHHHHHHHHHHHTCCH-HHHEEEECTTCCCTTCCEEEECS
T ss_pred             cCCCEEEEECch-HHHHHHHHHHHHC-C-CEEEEECCHHHHHHHHHHHhhhccccc-ceeEEEeeHHHhhCCCCEEEECC
Confidence            467999999975 9999999999999 7 9999988654332222221110  000 0112222  23456799999999


Q ss_pred             CCCC
Q 029640          106 CPAS  109 (190)
Q Consensus       106 g~~~  109 (190)
                      +...
T Consensus       202 g~~~  205 (287)
T 1nvt_A          202 PIGM  205 (287)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            8654

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=97.52  E-value=6.7e-05  Score=63.13  Aligned_cols=108  Identities=12%  Similarity=0.066  Sum_probs=58.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      +.+++++|+|+ |.+|++++..|++. |.+|+++.|+.+........+ . ..+..+ .|+.+.....+|+|||++|...
T Consensus       362 l~~k~vlV~Ga-GGig~aia~~L~~~-G~~V~i~~R~~~~a~~la~~~-~-~~~~~~-~dl~~~~~~~~DilVN~agvg~  436 (523)
T 2o7s_A          362 LASKTVVVIGA-GGAGKALAYGAKEK-GAKVVIANRTYERALELAEAI-G-GKALSL-TDLDNYHPEDGMVLANTTSMGM  436 (523)
T ss_dssp             ----CEEEECC-SHHHHHHHHHHHHH-CC-CEEEESSHHHHHHHHHHT-T-C-CEET-TTTTTC--CCSEEEEECSSTTC
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHc-C-CceeeH-HHhhhccccCceEEEECCCCCC
Confidence            36789999998 79999999999999 678999988654333222222 1 122211 1332212234899999998643


Q ss_pred             Cc------cc---ccCchhHHHHHHHHH-HHHHHHHHHcCCeE
Q 029640          110 PI------FY---KYNPVKTIKTNVIGT-LNMLGLAKRVGARI  142 (190)
Q Consensus       110 ~~------~~---~~~~~~~~~~n~~~~-~~l~~~~~~~~~~~  142 (190)
                      ..      ..   .......+++|+... ..+++.++..+.++
T Consensus       437 ~~~~~~~~~~~~~~~~~~~v~Dvny~p~~T~ll~~a~~~G~~~  479 (523)
T 2o7s_A          437 QPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAIT  479 (523)
T ss_dssp             TTCTTCCSSCTTTGGGEEEEEECCCSSSSCHHHHHHHTTTCEE
T ss_pred             CCCCCCCCCChHHcCcCcEEEEEeeCCccCHHHHHHHHCCCEE
Confidence            11      11   111223455555432 24556666556553

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.52  E-value=0.0022  Score=50.26  Aligned_cols=109  Identities=15%  Similarity=0.070  Sum_probs=68.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCCChhhhhhhhc-----CCceEEEe-ccccccccCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~D~~~~~~~~~d~vi~~a  105 (190)
                      |+|.|+|+ |.+|..++..|+..+ +++|.+++++.+........+..     ........ .|..  ++.+.|+||-++
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~--~l~~aDvViiav   77 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYA--DTANSDIVIITA   77 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGG--GGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHH--HHCCCCEEEEeC
Confidence            57999996 999999999999853 68999999975433321111111     01112222 3442  367899999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vS  146 (190)
                      +...  .......+.+..|+.....+.+.+.+...  .++.++
T Consensus        78 ~~p~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t  118 (310)
T 1guz_A           78 GLPR--KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS  118 (310)
T ss_dssp             SCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred             CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            7432  11222445677888888888887776642  555554

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.49  E-value=0.00038  Score=52.94  Aligned_cols=102  Identities=12%  Similarity=0.099  Sum_probs=63.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC-------------------Chhh---hhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-------------------SKDN---LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~-------------------~~~~---~~~~~~~~~~~~~~   87 (190)
                      +.+++|+|.| .|.+|..+++.|+..+-.++.+++++.-.                   ....   +..+-+...+..+.
T Consensus        29 l~~~~VlVvG-~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  107 (249)
T 1jw9_B           29 LKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN  107 (249)
T ss_dssp             HHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HhCCeEEEEe-eCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence            3568999999 78999999999999943589888886521                   1111   11111123455555


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      .++.+.    .+.++|+||.+...         ++        .-..+.+.|.+.++.+|..+...
T Consensus       108 ~~~~~~~~~~~~~~~DvVi~~~d~---------~~--------~~~~l~~~~~~~~~p~i~~~~~g  156 (249)
T 1jw9_B          108 ALLDDAELAALIAEHDLVLDCTDN---------VA--------VRNQLNAGCFAAKVPLVSGAAIR  156 (249)
T ss_dssp             SCCCHHHHHHHHHTSSEEEECCSS---------HH--------HHHHHHHHHHHHTCCEEEEEEEB
T ss_pred             ccCCHhHHHHHHhCCCEEEEeCCC---------HH--------HHHHHHHHHHHcCCCEEEeeecc
Confidence            555432    23479999988631         11        12345677777777777766543

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.48  E-value=0.00021  Score=55.01  Aligned_cols=76  Identities=12%  Similarity=0.228  Sum_probs=49.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      +.+++++|+|+ |.+|+.++..|++. |.+|++..|+.+........+.....+..  .|+.+....++|+||++++...
T Consensus       117 ~~~~~vlvlGa-Gg~g~a~a~~L~~~-G~~v~v~~R~~~~a~~l~~~~~~~~~~~~--~~~~~~~~~~~DivIn~t~~~~  192 (272)
T 1p77_A          117 RPNQHVLILGA-GGATKGVLLPLLQA-QQNIVLANRTFSKTKELAERFQPYGNIQA--VSMDSIPLQTYDLVINATSAGL  192 (272)
T ss_dssp             CTTCEEEEECC-SHHHHTTHHHHHHT-TCEEEEEESSHHHHHHHHHHHGGGSCEEE--EEGGGCCCSCCSEEEECCCC--
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHccccCCeEE--eeHHHhccCCCCEEEECCCCCC
Confidence            36789999996 78999999999999 69999999975443333222211112322  2332111137999999997543

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=97.48  E-value=0.002  Score=50.72  Aligned_cols=111  Identities=12%  Similarity=0.117  Sum_probs=70.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhc-----CCceEEEeccccccccCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~d~vi~~  104 (190)
                      +.++|.|+|+ |.+|..++..|+..+- .++.+++.+.+........+.+     ...+.... |. .+++.+.|+||..
T Consensus         5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~~-~~a~~~aDvVvi~   81 (317)
T 3d0o_A            5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-GE-YSDCHDADLVVIC   81 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-CC-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-CC-HHHhCCCCEEEEC
Confidence            4479999997 9999999999998832 5888888754322211111110     02233332 32 3457789999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vS  146 (190)
                      +|....  ........+..|+.....+.+.+.+...  .+|.+|
T Consensus        82 ag~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t  123 (317)
T 3d0o_A           82 AGAAQK--PGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT  123 (317)
T ss_dssp             CCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            985432  1233445678888888888888777653  455443

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.46  E-value=0.00027  Score=54.51  Aligned_cols=37  Identities=22%  Similarity=0.477  Sum_probs=30.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNY   66 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~   66 (190)
                      |+++||.|.|++|.+|+.+++.+.++.+.++... +|+
T Consensus         5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~   42 (272)
T 4f3y_A            5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRT   42 (272)
T ss_dssp             -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCT
T ss_pred             ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence            4568999999999999999999998866676664 554

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.43  E-value=0.0029  Score=49.88  Aligned_cols=111  Identities=14%  Similarity=0.115  Sum_probs=66.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhh-------cCCceEEEeccccccccCCcCEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWI-------GHPRFELIRHDVTEPLLIEVDQIY  102 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~d~vi  102 (190)
                      .+++|.|+|+ |.+|..++..|+.. +. .|.+++++.+........+.       ...++... .|.  .++.+.|+||
T Consensus         3 ~~~kI~VIGa-G~vG~~ia~~la~~-g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d~--~al~~aD~Vi   77 (322)
T 1t2d_A            3 PKAKIVLVGS-GMIGGVMATLIVQK-NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS-NTY--DDLAGADVVI   77 (322)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHT-TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE-CCG--GGGTTCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC-CCH--HHhCCCCEEE
Confidence            3578999996 99999999999998 55 78888876543332111111       11223321 444  4567899999


Q ss_pred             EccCCCCCcc-c--ccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 029640          103 HLACPASPIF-Y--KYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       103 ~~ag~~~~~~-~--~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vS  146 (190)
                      .++|...... .  +....+....|+.....+.+.+.+...  .+|++|
T Consensus        78 ~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  126 (322)
T 1t2d_A           78 VTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT  126 (322)
T ss_dssp             ECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             EeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9997543211 0  001334466676666677666655432  444444

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=97.41  E-value=5e-05  Score=60.00  Aligned_cols=70  Identities=14%  Similarity=0.074  Sum_probs=47.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccc-cc---------cCCcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PL---------LIEVD   99 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~---------~~~~d   99 (190)
                      ..+++++|+|++|.||..+++.+... |.+|++++++.+.... ...+ .. . ..  .|..+ ..         ..++|
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~-~~~~-g~-~-~~--~d~~~~~~~~~~~~~~~~~~~d  216 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAY-LKQI-GF-D-AA--FNYKTVNSLEEALKKASPDGYD  216 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHH-HHHT-TC-S-EE--EETTSCSCHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHH-HHhc-CC-c-EE--EecCCHHHHHHHHHHHhCCCCe
Confidence            36789999999999999999999988 7899998875432221 2222 11 1 11  34443 11         12599


Q ss_pred             EEEEccC
Q 029640          100 QIYHLAC  106 (190)
Q Consensus       100 ~vi~~ag  106 (190)
                      +||+++|
T Consensus       217 ~vi~~~g  223 (333)
T 1v3u_A          217 CYFDNVG  223 (333)
T ss_dssp             EEEESSC
T ss_pred             EEEECCC
Confidence            9999997

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.40  E-value=0.0014  Score=51.19  Aligned_cols=108  Identities=17%  Similarity=0.163  Sum_probs=62.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCC--eEEEEcCCCCCChhhhhhhhcC----CceEEEeccccccccCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      |+|.|+|+ |.+|..++..|+.. ++  +|.+++++.+........+...    ........|  ..++.+.|+||.+++
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~-g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~--~~a~~~aDvVIi~~~   76 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLR-GSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG--HSELADAQVVILTAG   76 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC--GGGGTTCSEEEECC-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC--HHHhCCCCEEEEcCC
Confidence            57999996 99999999999988 66  8999988643222112222111    122222223  245678999999997


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vS  146 (190)
                      .....  .....+.+..|+.....+.+.+.+...  .+|.+|
T Consensus        77 ~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t  116 (304)
T 2v6b_A           77 ANQKP--GESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS  116 (304)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred             CCCCC--CCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            43311  122334567788888888877776542  444444

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.35  E-value=0.0026  Score=50.31  Aligned_cols=105  Identities=10%  Similarity=-0.035  Sum_probs=65.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhh-------cCCceEEEeccccccccCCcCEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWI-------GHPRFELIRHDVTEPLLIEVDQIY  102 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~d~vi  102 (190)
                      +.++|.|+|+ |.+|..++..|+.. ++ +|.+.+++.+........+.       ...++.. ..|+. +.+.+.|+||
T Consensus         8 ~~~kI~VIGa-G~vG~~lA~~la~~-g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~~-ea~~~aDiVi   83 (331)
T 1pzg_A            8 RRKKVAMIGS-GMIGGTMGYLCALR-ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-EYSYE-AALTGADCVI   83 (331)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHH-TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-ECSHH-HHHTTCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhC-CCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-eCCHH-HHhCCCCEEE
Confidence            3478999996 99999999999998 65 88888887543332111111       1122222 13432 2467899999


Q ss_pred             EccCCCCCccccc---CchhHHHHHHHHHHHHHHHHHHcC
Q 029640          103 HLACPASPIFYKY---NPVKTIKTNVIGTLNMLGLAKRVG  139 (190)
Q Consensus       103 ~~ag~~~~~~~~~---~~~~~~~~n~~~~~~l~~~~~~~~  139 (190)
                      .++|.......+.   ........|+.....+.+.+.+..
T Consensus        84 ~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~  123 (331)
T 1pzg_A           84 VTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC  123 (331)
T ss_dssp             ECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             EccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            9997543211100   234456777777777777776654

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.33  E-value=0.00025  Score=55.85  Aligned_cols=76  Identities=8%  Similarity=0.059  Sum_probs=48.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCC---CCChhhhhhhhcCCceEEEeccccc-----cccCCcCE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYF---TGSKDNLRKWIGHPRFELIRHDVTE-----PLLIEVDQ  100 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~---~~~~~~~~~~~~~~~~~~~~~D~~~-----~~~~~~d~  100 (190)
                      +.+++++|+|+ |.+|+.++..|++. |. +|.++.|+.   +........+.....+.....++.+     ....+.|+
T Consensus       152 l~gk~~lVlGa-GG~g~aia~~L~~~-Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDi  229 (315)
T 3tnl_A          152 IIGKKMTICGA-GGAATAICIQAALD-GVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVI  229 (315)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHT-TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             ccCCEEEEECC-ChHHHHHHHHHHHC-CCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCE
Confidence            47899999995 89999999999999 65 899999973   2222222222111122222233332     12347999


Q ss_pred             EEEccCC
Q 029640          101 IYHLACP  107 (190)
Q Consensus       101 vi~~ag~  107 (190)
                      |||+...
T Consensus       230 IINaTp~  236 (315)
T 3tnl_A          230 FTNATGV  236 (315)
T ss_dssp             EEECSST
T ss_pred             EEECccC
Confidence            9999753

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=97.31  E-value=6.1e-05  Score=59.55  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=33.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ..+++|+|+|++|.||..+++.+... |.+|+++.++++
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~  185 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAE  185 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence            46799999999999999999999888 789999987543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.28  E-value=0.00076  Score=46.40  Aligned_cols=68  Identities=15%  Similarity=0.146  Sum_probs=51.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------CCcCEEEEcc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------~~~d~vi~~a  105 (190)
                      .++++|.| .|.+|+.+++.|.+. |++|++++++++    ....+.. .++..+.+|..++..      .+.|+||.+.
T Consensus         7 ~~~viIiG-~G~~G~~la~~L~~~-g~~v~vid~~~~----~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~   79 (140)
T 3fwz_A            7 CNHALLVG-YGRVGSLLGEKLLAS-DIPLVVIETSRT----RVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTI   79 (140)
T ss_dssp             CSCEEEEC-CSHHHHHHHHHHHHT-TCCEEEEESCHH----HHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECC
T ss_pred             CCCEEEEC-cCHHHHHHHHHHHHC-CCCEEEEECCHH----HHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEEC
Confidence            36799999 699999999999998 899999988543    2333222 367888899887642      4689888876


Q ss_pred             C
Q 029640          106 C  106 (190)
Q Consensus       106 g  106 (190)
                      +
T Consensus        80 ~   80 (140)
T 3fwz_A           80 P   80 (140)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.27  E-value=0.00072  Score=52.09  Aligned_cols=73  Identities=12%  Similarity=0.127  Sum_probs=49.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      +.+++++|+|+ |.+|+.++..|++. | .+|.+..|+.+........+.. ..+.....+  +....+.|+|||+-..
T Consensus       118 l~~k~~lvlGa-Gg~~~aia~~L~~~-G~~~v~i~~R~~~~a~~la~~~~~-~~~~~~~~~--~l~~~~~DivInaTp~  191 (272)
T 3pwz_A          118 LRNRRVLLLGA-GGAVRGALLPFLQA-GPSELVIANRDMAKALALRNELDH-SRLRISRYE--ALEGQSFDIVVNATSA  191 (272)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHT-CCSEEEEECSCHHHHHHHHHHHCC-TTEEEECSG--GGTTCCCSEEEECSSG
T ss_pred             ccCCEEEEECc-cHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhcc-CCeeEeeHH--HhcccCCCEEEECCCC
Confidence            36799999995 88999999999998 6 5999999965544333333221 234443322  2212578999998653

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.26  E-value=0.00013  Score=58.76  Aligned_cols=72  Identities=14%  Similarity=0.195  Sum_probs=47.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-----ccCCcCEEEEc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQIYHL  104 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~d~vi~~  104 (190)
                      +.+++|+|+|+ |.||+.+++.+... |.+|++++|+.+.... ...... ..   +..|..+.     ...++|+||++
T Consensus       164 l~~~~V~ViGa-G~iG~~~a~~l~~~-Ga~V~~~d~~~~~~~~-~~~~~g-~~---~~~~~~~~~~l~~~~~~~DvVi~~  236 (369)
T 2eez_A          164 VAPASVVILGG-GTVGTNAAKIALGM-GAQVTILDVNHKRLQY-LDDVFG-GR---VITLTATEANIKKSVQHADLLIGA  236 (369)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESCHHHHHH-HHHHTT-TS---EEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhC-CCEEEEEECCHHHHHH-HHHhcC-ce---EEEecCCHHHHHHHHhCCCEEEEC
Confidence            36799999998 99999999999998 7899999886433221 111111 12   12232221     23469999999


Q ss_pred             cCCC
Q 029640          105 ACPA  108 (190)
Q Consensus       105 ag~~  108 (190)
                      ++..
T Consensus       237 ~g~~  240 (369)
T 2eez_A          237 VLVP  240 (369)
T ss_dssp             CC--
T ss_pred             CCCC
Confidence            9743

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.25  E-value=0.0017  Score=46.55  Aligned_cols=70  Identities=17%  Similarity=0.164  Sum_probs=49.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-------cCCcCEEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-------~~~~d~vi~  103 (190)
                      .+++|+|+| .|.+|+.+++.|.+.+|++|++++++++.    ...+.. .++..+.+|..+..       ..++|+||.
T Consensus        38 ~~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~----~~~~~~-~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~  111 (183)
T 3c85_A           38 GHAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEA----AQQHRS-EGRNVISGDATDPDFWERILDTGHVKLVLL  111 (183)
T ss_dssp             TTCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHH----HHHHHH-TTCCEEECCTTCHHHHHTBCSCCCCCEEEE
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHH----HHHHHH-CCCCEEEcCCCCHHHHHhccCCCCCCEEEE
Confidence            567899999 79999999999988624789999885432    222221 24566667776532       346899998


Q ss_pred             ccC
Q 029640          104 LAC  106 (190)
Q Consensus       104 ~ag  106 (190)
                      +.+
T Consensus       112 ~~~  114 (183)
T 3c85_A          112 AMP  114 (183)
T ss_dssp             CCS
T ss_pred             eCC
Confidence            764

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=97.24  E-value=0.00018  Score=57.15  Aligned_cols=70  Identities=17%  Similarity=0.119  Sum_probs=47.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-c---------cCCcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-L---------LIEVD   99 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~---------~~~~d   99 (190)
                      ..+++|+|+|++|.||..+++.+... |.+|+++.|+.+.. +....+ ..  ...  .|..+. .         ..++|
T Consensus       168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~-~~~~~~-g~--~~~--~d~~~~~~~~~~~~~~~~~~~D  240 (347)
T 2hcy_A          168 MAGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKE-ELFRSI-GG--EVF--IDFTKEKDIVGAVLKATDGGAH  240 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHH-HHHHHT-TC--CEE--EETTTCSCHHHHHHHHHTSCEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHH-HHHHHc-CC--ceE--EecCccHhHHHHHHHHhCCCCC
Confidence            36789999999999999999999988 78999998865433 222222 11  112  244421 1         01699


Q ss_pred             EEEEccC
Q 029640          100 QIYHLAC  106 (190)
Q Consensus       100 ~vi~~ag  106 (190)
                      +||+++|
T Consensus       241 ~vi~~~g  247 (347)
T 2hcy_A          241 GVINVSV  247 (347)
T ss_dssp             EEEECSS
T ss_pred             EEEECCC
Confidence            9999997

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.24  E-value=0.00014  Score=50.30  Aligned_cols=72  Identities=17%  Similarity=0.272  Sum_probs=47.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      .+++++|+| +|.+|+.+++.|... +.+|.+..|+.+........+    .+.....+-......++|+||.+.+..
T Consensus        20 ~~~~v~iiG-~G~iG~~~a~~l~~~-g~~v~v~~r~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~Divi~at~~~   91 (144)
T 3oj0_A           20 GGNKILLVG-NGMLASEIAPYFSYP-QYKVTVAGRNIDHVRAFAEKY----EYEYVLINDIDSLIKNNDVIITATSSK   91 (144)
T ss_dssp             CCCEEEEEC-CSHHHHHHGGGCCTT-TCEEEEEESCHHHHHHHHHHH----TCEEEECSCHHHHHHTCSEEEECSCCS
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEcCCHHHHHHHHHHh----CCceEeecCHHHHhcCCCEEEEeCCCC
Confidence            378999999 599999999999987 777888888654333222222    123322222223345799999998644

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=97.23  E-value=7.9e-05  Score=59.44  Aligned_cols=37  Identities=19%  Similarity=0.086  Sum_probs=32.6

Q ss_pred             cCC--CEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCC
Q 029640           30 QSN--MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYF   67 (190)
Q Consensus        30 ~~~--~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~   67 (190)
                      ..+  ++|+|+|++|.||..+++.+... |. +|+++.++.
T Consensus       157 ~~g~~~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~  196 (357)
T 2zb4_A          157 TAGSNKTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTH  196 (357)
T ss_dssp             CTTSCCEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCH
T ss_pred             CCCCccEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCH
Confidence            357  89999999999999999999988 77 999988853

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=97.23  E-value=0.00061  Score=53.99  Aligned_cols=91  Identities=18%  Similarity=0.145  Sum_probs=53.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCe---EEEE-cCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNE---VIVV-DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~---v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      ++|.|.|++|++|+.+++.|.++ ++.   +..+ .++.....  +.  .....+.+...|..  .. ++|+||.|.|..
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~-~~~~~~l~~~~s~~~~g~~--l~--~~g~~i~v~~~~~~--~~-~~DvV~~a~g~~   72 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEAR-NFPLSELRLYASPRSAGVR--LA--FRGEEIPVEPLPEG--PL-PVDLVLASAGGG   72 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHT-TCCCSCCEEEECGGGSSCE--EE--ETTEEEEEEECCSS--CC-CCSEEEECSHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-CCCcEEEEEeeccccCCCE--EE--EcCceEEEEeCChh--hc-CCCEEEECCCcc
Confidence            47999999999999999999965 332   2222 22111111  11  11113444444433  23 899999998622


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      .                  +........+.+.++|-.|+.+
T Consensus        73 ~------------------s~~~a~~~~~~G~~vId~s~~~   95 (331)
T 2yv3_A           73 I------------------SRAKALVWAEGGALVVDNSSAW   95 (331)
T ss_dssp             H------------------HHHHHHHHHHTTCEEEECSSSS
T ss_pred             c------------------hHHHHHHHHHCCCEEEECCCcc
Confidence            1                  2234445556677888888753

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.20  E-value=0.00062  Score=53.48  Aligned_cols=70  Identities=14%  Similarity=0.062  Sum_probs=47.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc----------cCCcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVD   99 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~----------~~~~d   99 (190)
                      ..+++|+|+||+|.||..+++.+... |.+|+++.++++... ....+ .. . ..  .|..+..          ..++|
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~-~~~~~-g~-~-~~--~~~~~~~~~~~~~~~~~~~~~D  211 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQ-SALKA-GA-W-QV--INYREEDLVERLKEITGGKKVR  211 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHH-HHHHH-TC-S-EE--EETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHH-HHHHc-CC-C-EE--EECCCccHHHHHHHHhCCCCce
Confidence            36789999999999999999999999 789999988543222 22222 11 1 12  2333221          12599


Q ss_pred             EEEEccC
Q 029640          100 QIYHLAC  106 (190)
Q Consensus       100 ~vi~~ag  106 (190)
                      +||+++|
T Consensus       212 ~vi~~~g  218 (327)
T 1qor_A          212 VVYDSVG  218 (327)
T ss_dssp             EEEECSC
T ss_pred             EEEECCc
Confidence            9999997

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.20  E-value=0.0014  Score=50.76  Aligned_cols=74  Identities=18%  Similarity=0.288  Sum_probs=42.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCC-Chhhhhhhhc--CCceEEEeccccccccCCcCEEEEcc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTG-SKDNLRKWIG--HPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~-~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      .++.||.|.|++|.+|+.+++.+.++.+.++... +|+... .......+..  ..++... .|+. ..+.++|+||.+.
T Consensus        19 ~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~-~dl~-~ll~~aDVvIDFT   96 (288)
T 3ijp_A           19 PGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRIT-DDPE-SAFSNTEGILDFS   96 (288)
T ss_dssp             --CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCB-SCHH-HHTTSCSEEEECS
T ss_pred             cCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceee-CCHH-HHhcCCCEEEEcC
Confidence            3557999999999999999999998866666555 443221 1111222211  1122211 2322 2234789998886

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.19  E-value=0.00031  Score=54.80  Aligned_cols=77  Identities=17%  Similarity=0.121  Sum_probs=48.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +.+++++|+|+ |.+|+.++..|++. |. +|++..|+.+........+..... .....+-......+.|+||++.+..
T Consensus       139 l~~~~vlVlGa-Gg~g~aia~~L~~~-G~~~V~v~nR~~~ka~~la~~~~~~~~-~~~~~~~~~~~~~~aDivIn~t~~~  215 (297)
T 2egg_A          139 LDGKRILVIGA-GGGARGIYFSLLST-AAERIDMANRTVEKAERLVREGDERRS-AYFSLAEAETRLAEYDIIINTTSVG  215 (297)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTT-TCSEEEEECSSHHHHHHHHHHSCSSSC-CEECHHHHHHTGGGCSEEEECSCTT
T ss_pred             CCCCEEEEECc-HHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHhhhccC-ceeeHHHHHhhhccCCEEEECCCCC
Confidence            46799999995 78999999999998 65 999999865433322222111000 1111111112345799999998754


Q ss_pred             C
Q 029640          109 S  109 (190)
Q Consensus       109 ~  109 (190)
                      .
T Consensus       216 ~  216 (297)
T 2egg_A          216 M  216 (297)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.19  E-value=0.00088  Score=51.85  Aligned_cols=74  Identities=12%  Similarity=0.149  Sum_probs=49.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +.+++++|+|+ |.+|+.++..|++. | .+|.+..|+.+........+.....+....  ..+.. .+.|+||++....
T Consensus       124 l~~k~vlvlGa-Gg~g~aia~~L~~~-G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~--~~~l~-~~aDiIInaTp~g  198 (281)
T 3o8q_A          124 LKGATILLIGA-GGAARGVLKPLLDQ-QPASITVTNRTFAKAEQLAELVAAYGEVKAQA--FEQLK-QSYDVIINSTSAS  198 (281)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTT-CCSEEEEEESSHHHHHHHHHHHGGGSCEEEEE--GGGCC-SCEEEEEECSCCC
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHhhccCCeeEee--HHHhc-CCCCEEEEcCcCC
Confidence            46799999995 88999999999998 6 599999997554433333322212234432  22222 5789999987543

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=97.18  E-value=0.00011  Score=58.71  Aligned_cols=71  Identities=11%  Similarity=-0.029  Sum_probs=47.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc----------cCCcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVD   99 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~----------~~~~d   99 (190)
                      ..+++|+|+||+|.||..+++.+... |.+|+++.++++.... ...+. . . ..  .|..+..          ..++|
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~-~~~~g-~-~-~~--~~~~~~~~~~~~~~~~~~~~~d  233 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQM-AEKLG-A-A-AG--FNYKKEDFSEATLKFTKGAGVN  233 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHH-HHHHT-C-S-EE--EETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHH-HHHcC-C-c-EE--EecCChHHHHHHHHHhcCCCce
Confidence            36789999999999999999999988 7899999885433221 22221 1 1 12  2333221          12599


Q ss_pred             EEEEccCC
Q 029640          100 QIYHLACP  107 (190)
Q Consensus       100 ~vi~~ag~  107 (190)
                      +||+++|.
T Consensus       234 ~vi~~~G~  241 (354)
T 2j8z_A          234 LILDCIGG  241 (354)
T ss_dssp             EEEESSCG
T ss_pred             EEEECCCc
Confidence            99999973

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.18  E-value=0.0019  Score=48.29  Aligned_cols=71  Identities=20%  Similarity=0.327  Sum_probs=56.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.+++|+|.| +|-+|...++.|++. |..|+++....   ...+..+.....+.++..+.....+.+.|.||-+.
T Consensus        29 L~gk~VLVVG-gG~va~~ka~~Ll~~-GA~VtVvap~~---~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT   99 (223)
T 3dfz_A           29 LKGRSVLVVG-GGTIATRRIKGFLQE-GAAITVVAPTV---SAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVAT   99 (223)
T ss_dssp             CTTCCEEEEC-CSHHHHHHHHHHGGG-CCCEEEECSSC---CHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECC
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEECCCC---CHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECC
Confidence            5789999999 789999999999999 88999987642   23345555556788888888777778899998654

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.16  E-value=0.012  Score=46.08  Aligned_cols=109  Identities=14%  Similarity=0.050  Sum_probs=65.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhh-------cCCceEEEeccccccccCCcCEEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWI-------GHPRFELIRHDVTEPLLIEVDQIYH  103 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~-------~~~~~~~~~~D~~~~~~~~~d~vi~  103 (190)
                      .++|.|+|+ |.+|..++..|+.. ++ +|.+.+++.+........+.       ...++... .|.  ..+.++|+||.
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~-g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~d~--~a~~~aDiVi~   78 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKD-NLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT-DDY--ADISGSDVVII   78 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHH-TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE-SCG--GGGTTCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC-CCH--HHhCCCCEEEE
Confidence            478999996 99999999999998 66 89999887543332111110       01223221 343  35678999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--CeEEEEec
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTST  147 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~i~vSS  147 (190)
                      ++|.....  .....+.+..|......+++.+.+..  ..+|.+|.
T Consensus        79 avg~p~~~--g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN  122 (317)
T 2ewd_A           79 TASIPGRP--KDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN  122 (317)
T ss_dssp             CCCCSSCC--SSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred             eCCCCCCC--CCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            99754321  12233344556666666666665543  24554554

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.15  E-value=0.0054  Score=47.90  Aligned_cols=103  Identities=13%  Similarity=0.098  Sum_probs=62.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC--CeEEEEcCCCCCChhhhhhhh-----cCCceEEEeccccccccCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWI-----GHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~--~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |+|.|+| +|.+|..++..|++. +  ++|.+.+|+.+........+.     ....+.....|.  ....+.|+||-++
T Consensus         2 ~kI~VIG-aG~~G~~la~~L~~~-g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~--~~~~~aDvViiav   77 (309)
T 1hyh_A            2 RKIGIIG-LGNVGAAVAHGLIAQ-GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW--AALADADVVISTL   77 (309)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHH-TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG--GGGTTCSEEEECC
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhC-CCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH--HHhCCCCEEEEec
Confidence            6899999 899999999999998 6  799999886433222111111     011233323454  4556899999998


Q ss_pred             CCCCCcc--cccCchhHHHHHHHHHHHHHHHHHHcC
Q 029640          106 CPASPIF--YKYNPVKTIKTNVIGTLNMLGLAKRVG  139 (190)
Q Consensus       106 g~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~  139 (190)
                      +......  ........+..|+.....+++.+.+..
T Consensus        78 ~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~  113 (309)
T 1hyh_A           78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG  113 (309)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            7533100  011223345667776677777666543

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=97.13  E-value=0.001  Score=52.94  Aligned_cols=70  Identities=16%  Similarity=0.116  Sum_probs=47.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc----------cCCcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVD   99 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~----------~~~~d   99 (190)
                      ..+++|+|+|++|.||..+++.+... |.+|+++.++++... ....+. .  ...  .|..+..          ..++|
T Consensus       169 ~~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~-~~~~~g-a--~~~--~d~~~~~~~~~~~~~~~~~~~D  241 (351)
T 1yb5_A          169 KAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQK-IVLQNG-A--HEV--FNHREVNYIDKIKKYVGEKGID  241 (351)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHH-HHHHTT-C--SEE--EETTSTTHHHHHHHHHCTTCEE
T ss_pred             CCcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHH-HHHHcC-C--CEE--EeCCCchHHHHHHHHcCCCCcE
Confidence            36789999999999999999999988 789999988543322 222221 1  112  2333221          12699


Q ss_pred             EEEEccC
Q 029640          100 QIYHLAC  106 (190)
Q Consensus       100 ~vi~~ag  106 (190)
                      +||+++|
T Consensus       242 ~vi~~~G  248 (351)
T 1yb5_A          242 IIIEMLA  248 (351)
T ss_dssp             EEEESCH
T ss_pred             EEEECCC
Confidence            9999996

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=97.12  E-value=0.0018  Score=51.18  Aligned_cols=37  Identities=11%  Similarity=0.041  Sum_probs=32.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ..+++|+|+|++|.||..+++.+... |.+|+++.++.
T Consensus       154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~  190 (345)
T 2j3h_A          154 KEGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSK  190 (345)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence            46789999999999999999999988 78999988754

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=97.12  E-value=0.0054  Score=48.94  Aligned_cols=101  Identities=19%  Similarity=0.154  Sum_probs=64.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +.+.+|+|.| .|.+|..+++.|+..|-.++.+++++.-...+.                      +..+-+...+..+.
T Consensus       116 L~~~~VlvvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~  194 (353)
T 3h5n_A          116 LKNAKVVILG-CGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIA  194 (353)
T ss_dssp             HHTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEE
T ss_pred             HhCCeEEEEC-CCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEee
Confidence            3578999999 688999999999999546888887754222111                      11111223566666


Q ss_pred             ccccccc----cCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEec
Q 029640           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus        88 ~D~~~~~----~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS  147 (190)
                      .++....    +.++|+||.+...         +..       .-..+-++|.+.++.+|+.+.
T Consensus       195 ~~i~~~~~~~~~~~~DlVvd~~Dn---------~~~-------~r~~ln~~c~~~~~p~i~~~~  242 (353)
T 3h5n_A          195 LNINDYTDLHKVPEADIWVVSADH---------PFN-------LINWVNKYCVRANQPYINAGY  242 (353)
T ss_dssp             CCCCSGGGGGGSCCCSEEEECCCC---------STT-------HHHHHHHHHHHTTCCEEEEEE
T ss_pred             cccCchhhhhHhccCCEEEEecCC---------hHH-------HHHHHHHHHHHhCCCEEEEEE
Confidence            5554332    5679999987621         110       013455788888888887654

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=97.10  E-value=0.0012  Score=52.10  Aligned_cols=71  Identities=18%  Similarity=0.115  Sum_probs=48.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc----------cCCcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVD   99 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~----------~~~~d   99 (190)
                      ..+++|+|+|++|.||..+++.+... |.+|+++.|+.+... ....+ .. . ..  .|..+..          ..++|
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~-~~~~~-g~-~-~~--~d~~~~~~~~~i~~~~~~~~~d  216 (333)
T 1wly_A          144 KPGDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAE-TARKL-GC-H-HT--INYSTQDFAEVVREITGGKGVD  216 (333)
T ss_dssp             CTTCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHH-HHHHH-TC-S-EE--EETTTSCHHHHHHHHHTTCCEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HHHHc-CC-C-EE--EECCCHHHHHHHHHHhCCCCCe
Confidence            36789999999999999999999998 789999988643222 22222 11 1 12  2333321          12599


Q ss_pred             EEEEccCC
Q 029640          100 QIYHLACP  107 (190)
Q Consensus       100 ~vi~~ag~  107 (190)
                      +||+++|.
T Consensus       217 ~vi~~~g~  224 (333)
T 1wly_A          217 VVYDSIGK  224 (333)
T ss_dssp             EEEECSCT
T ss_pred             EEEECCcH
Confidence            99999974

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.10  E-value=0.0062  Score=47.79  Aligned_cols=111  Identities=14%  Similarity=0.194  Sum_probs=68.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCCChhhhhhhhc---C--CceEEEeccccccccCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIG---H--PRFELIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~d~vi~~  104 (190)
                      +.++|.|+|+ |.+|..++..|+..+ ..+|.+++++.+........+.+   .  ..+.... |. ..++.+.|+||.+
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~~-~~al~~aDvViia   81 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-GD-YDDCRDADLVVIC   81 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-CC-GGGTTTCSEEEEC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-Cc-HHHhCCCCEEEEc
Confidence            3478999997 999999999998873 24899998864322211122211   0  1233332 21 2456789999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vS  146 (190)
                      ++.....  .....+.+..|......+.+.+.+...  .++++|
T Consensus        82 ~~~~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t  123 (316)
T 1ldn_A           82 AGANQKP--GETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT  123 (316)
T ss_dssp             CSCCCCT--TTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             CCCCCCC--CCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence            9865422  123345567777777777777766542  344443

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.10  E-value=0.0005  Score=53.30  Aligned_cols=76  Identities=12%  Similarity=0.073  Sum_probs=49.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhh---cCCceEEEeccccccccCCcCEEEEcc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.+++++|+|+ |.+|+.++..|++. |. +|.+..|+.+........+.   ....+.....+-......+.|+|||+.
T Consensus       125 l~~k~vlVlGa-GG~g~aia~~L~~~-G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaT  202 (283)
T 3jyo_A          125 AKLDSVVQVGA-GGVGNAVAYALVTH-GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT  202 (283)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHT-TCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence            46899999996 89999999999999 65 79999987554433322221   112233322211122334689999997


Q ss_pred             CC
Q 029640          106 CP  107 (190)
Q Consensus       106 g~  107 (190)
                      ..
T Consensus       203 p~  204 (283)
T 3jyo_A          203 PM  204 (283)
T ss_dssp             ST
T ss_pred             CC
Confidence            53

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.09  E-value=0.015  Score=45.93  Aligned_cols=109  Identities=13%  Similarity=0.073  Sum_probs=66.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhh---hhhhh----cCCceEEEeccccccccCCcCEEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDN---LRKWI----GHPRFELIRHDVTEPLLIEVDQIYH  103 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~---~~~~~----~~~~~~~~~~D~~~~~~~~~d~vi~  103 (190)
                      .++|.|+|+ |.+|..++..|+.. ++ .|.+.+++.+.....   +.+..    ...++... .|.  .++.+.|+||-
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~-g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d~--~al~~aD~VI~   88 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQK-DLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE-NNY--EYLQNSDVVII   88 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SCG--GGGTTCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC-CCH--HHHCCCCEEEE
Confidence            368999996 99999999999998 66 898888875433321   11111    12233322 454  45678999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ++|.....  .....+....|+.....+.+.+.+...  .+|++|.
T Consensus        89 avg~p~k~--g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  132 (328)
T 2hjr_A           89 TAGVPRKP--NMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN  132 (328)
T ss_dssp             CCSCCCCT--TCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             cCCCCCCC--CCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            99754311  112224456677777777776655432  4444443

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.09  E-value=0.0053  Score=48.24  Aligned_cols=108  Identities=15%  Similarity=0.111  Sum_probs=64.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCC--eEEEEcCCCCCChhhhhhhhc----CCceEEEeccccccccCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~--~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      |+|.|+|+ |.+|..++..|+.. ++  +|.+.+++.+........+..    .........|  .....++|+||.+++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~-g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d--~~~~~~aDvViiav~   76 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMK-GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD--YADLKGSDVVIVAAG   76 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHH-TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC--GGGGTTCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhC-CCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC--HHHhCCCCEEEEccC
Confidence            57999996 99999999999998 67  899998864322221111100    0111222223  234568999999987


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vS  146 (190)
                      ....  ......+....|......+++.+.+...  .+|.+|
T Consensus        77 ~~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t  116 (319)
T 1a5z_A           77 VPQK--PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT  116 (319)
T ss_dssp             CCCC--SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            4331  1112344566677777777777765432  444443

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.08  E-value=0.0036  Score=47.44  Aligned_cols=34  Identities=21%  Similarity=0.308  Sum_probs=28.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      ++|.|.|++|.+|+.+++.+.+..++++......
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~   34 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDA   34 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEcc
Confidence            4799999999999999999987657787765543

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=97.04  E-value=0.0083  Score=48.22  Aligned_cols=115  Identities=15%  Similarity=0.045  Sum_probs=70.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC----eEEEEcCCCCCC----hhhhhhhhcCC--ceEEEe-ccccccccCCcC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKN----EVIVVDNYFTGS----KDNLRKWIGHP--RFELIR-HDVTEPLLIEVD   99 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~----~v~~~~r~~~~~----~~~~~~~~~~~--~~~~~~-~D~~~~~~~~~d   99 (190)
                      ..++|.|+||+|.||..++-.|+..+-.    .+.+..-..+..    .-...++.+..  -...+. .+-...++.+.|
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daD  110 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD  110 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCC
Confidence            3478999999999999999999987321    255543322221    11111221111  111111 121224567899


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-C--CeEEEEec
Q 029640          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-G--ARILLTST  147 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~--~~~i~vSS  147 (190)
                      +||-.||...  ...+...+.++.|..-...+.+.+.++ +  ..++.+|.
T Consensus       111 vVVitag~pr--kpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN  159 (375)
T 7mdh_A          111 WALLIGAKPR--GPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN  159 (375)
T ss_dssp             EEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             EEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            9999998532  223456678899999999998888764 3  36777765

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.04  E-value=0.0084  Score=46.81  Aligned_cols=101  Identities=16%  Similarity=0.131  Sum_probs=61.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCC--eEEEEcCCCCCChh-hh--hhhhc-CCceEEEec-cccccccCCcCEEEEc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKD-NL--RKWIG-HPRFELIRH-DVTEPLLIEVDQIYHL  104 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~--~v~~~~r~~~~~~~-~~--~~~~~-~~~~~~~~~-D~~~~~~~~~d~vi~~  104 (190)
                      .|+|.|+|+ |.+|..++..|+.. ++  +|.+++|+.+.... .+  .+... ......... |.  ....++|+||.+
T Consensus         7 ~mkI~IiGa-G~vG~~~a~~l~~~-g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~aD~Vii~   82 (319)
T 1lld_A            7 PTKLAVIGA-GAVGSTLAFAAAQR-GIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP--EICRDADMVVIT   82 (319)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHT-TCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG--GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH--HHhCCCCEEEEC
Confidence            478999996 99999999999998 66  89999886432210 11  11000 011222221 22  345679999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV  138 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~  138 (190)
                      ++....  ......+.+..|......+++.+++.
T Consensus        83 v~~~~~--~g~~r~~~~~~n~~~~~~~~~~i~~~  114 (319)
T 1lld_A           83 AGPRQK--PGQSRLELVGATVNILKAIMPNLVKV  114 (319)
T ss_dssp             CCCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            974332  12234455666777666676666554

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=97.01  E-value=0.0068  Score=48.22  Aligned_cols=105  Identities=10%  Similarity=0.181  Sum_probs=66.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh----------------------hhhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~   87 (190)
                      +.+.+|+|.| .|.+|.++++.|+..|-..+.+++...-...+                      .+..+-+...+..+.
T Consensus        34 L~~~~VlivG-~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~  112 (346)
T 1y8q_A           34 LRASRVLLVG-LKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDT  112 (346)
T ss_dssp             HHTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEEC
T ss_pred             HhCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEe
Confidence            3568999999 78999999999999944688888543211111                      111111223455555


Q ss_pred             ccccc---cccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           88 HDVTE---PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        88 ~D~~~---~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      .++.+   ..+.++|+||.+..         +        ...-..+-+.|.+.++.+|..++.+.+|
T Consensus       113 ~~~~~~~~~~~~~~dvVv~~~d---------~--------~~~r~~ln~~~~~~~ip~i~~~~~G~~G  163 (346)
T 1y8q_A          113 EDIEKKPESFFTQFDAVCLTCC---------S--------RDVIVKVDQICHKNSIKFFTGDVFGYHG  163 (346)
T ss_dssp             SCGGGCCHHHHTTCSEEEEESC---------C--------HHHHHHHHHHHHHTTCEEEEEEEEBTEE
T ss_pred             cccCcchHHHhcCCCEEEEcCC---------C--------HHHHHHHHHHHHHcCCCEEEEeecccEE
Confidence            55532   22357999998752         1        1122356778888888888887766544

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.99  E-value=0.0091  Score=46.71  Aligned_cols=108  Identities=11%  Similarity=0.076  Sum_probs=70.0

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhc-----CCceEEEe-ccccccccCCcCEEEEccC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~D~~~~~~~~~d~vi~~ag  106 (190)
                      +|.|+|+ |.+|..++..|+.. +. ++.+++++.+.......++..     ........ .|.  .++.+.|+||..+|
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~-~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~--~a~~~aD~Vi~~ag   76 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMR-GYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY--EDMRGSDIVLVTAG   76 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHH-TCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG--GGGTTCSEEEECCS
T ss_pred             CEEEECc-CHHHHHHHHHHHhC-CCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH--HHhCCCCEEEEeCC
Confidence            5889997 99999999999987 54 699998865433322222211     11222222 453  46788999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--CeEEEEec
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTST  147 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~i~vSS  147 (190)
                      ....  ...........|+.-...+++.+.+..  ..+|++|.
T Consensus        77 ~~~k--~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (308)
T 2d4a_B           77 IGRK--PGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN  117 (308)
T ss_dssp             CCCC--SSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCC--CCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5432  223445667788888888888877654  25666654

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.95  E-value=0.00089  Score=52.59  Aligned_cols=77  Identities=8%  Similarity=0.026  Sum_probs=48.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCC---CCChhhhhhhhcCCceEEEeccccc-----cccCCcCE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYF---TGSKDNLRKWIGHPRFELIRHDVTE-----PLLIEVDQ  100 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~---~~~~~~~~~~~~~~~~~~~~~D~~~-----~~~~~~d~  100 (190)
                      +.+++++|+|+ |.+|+.++..|.+. |. +|.+..|+.   +........+...........+..+     ....+.|+
T Consensus       146 l~gk~~lVlGA-GGaaraia~~L~~~-G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~Di  223 (312)
T 3t4e_A          146 MRGKTMVLLGA-GGAATAIGAQAAIE-GIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADI  223 (312)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHT-TCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSE
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHHc-CCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceE
Confidence            46799999995 89999999999999 64 899999972   2222222222111122222233333     12346899


Q ss_pred             EEEccCCC
Q 029640          101 IYHLACPA  108 (190)
Q Consensus       101 vi~~ag~~  108 (190)
                      |||+-...
T Consensus       224 IINaTp~G  231 (312)
T 3t4e_A          224 LTNGTKVG  231 (312)
T ss_dssp             EEECSSTT
T ss_pred             EEECCcCC
Confidence            99997543

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.94  E-value=0.0016  Score=51.53  Aligned_cols=72  Identities=18%  Similarity=0.109  Sum_probs=48.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-------c-cCCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-------L-LIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-------~-~~~~d~v  101 (190)
                      ..+.+|+|+|++|.||..+++.+... |.+|+++.++.+... ....+. ..  ..+..+ .+.       . ..++|+|
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~-~~~~~g-a~--~v~~~~-~~~~~~v~~~~~~~g~Dvv  231 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATE-FVKSVG-AD--IVLPLE-EGWAKAVREATGGAGVDMV  231 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHH-HHHHHT-CS--EEEESS-TTHHHHHHHHTTTSCEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHH-HHHhcC-Cc--EEecCc-hhHHHHHHHHhCCCCceEE
Confidence            36789999999999999999999988 789999988654432 222221 11  222222 111       0 1269999


Q ss_pred             EEccCC
Q 029640          102 YHLACP  107 (190)
Q Consensus       102 i~~ag~  107 (190)
                      |+++|.
T Consensus       232 id~~g~  237 (342)
T 4eye_A          232 VDPIGG  237 (342)
T ss_dssp             EESCC-
T ss_pred             EECCch
Confidence            999973

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.92  E-value=0.024  Score=44.25  Aligned_cols=108  Identities=13%  Similarity=0.130  Sum_probs=68.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC--eEEEEcCCCCCChhhhhhh--hcCCceEEEeccccccccCCcCEEEEccC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~--~v~~~~r~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      .+++|.|+| +|.+|..++..|+.. +.  ++.+.+.+.+ ......++  ....++... .|.  .++.++|+||..+|
T Consensus        13 ~~~kV~ViG-aG~vG~~~a~~l~~~-g~~~ev~L~Di~~~-~~g~a~dl~~~~~~~i~~t-~d~--~~l~~aD~Vi~aag   86 (303)
T 2i6t_A           13 TVNKITVVG-GGELGIACTLAISAK-GIADRLVLLDLSEG-TKGATMDLEIFNLPNVEIS-KDL--SASAHSKVVIFTVN   86 (303)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHHH-TCCSEEEEECCC------CHHHHHHHTCTTEEEE-SCG--GGGTTCSEEEECCC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhc-CCCCEEEEEcCCcc-hHHHHHHHhhhcCCCeEEe-CCH--HHHCCCCEEEEcCC
Confidence            457899999 599999999999998 66  8999988764 22111111  122345542 454  45778999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ...+   .+...+.+..|..-...+.+.+.+..-  .+|++|-
T Consensus        87 ~~~p---G~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN  126 (303)
T 2i6t_A           87 SLGS---SQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ  126 (303)
T ss_dssp             C-------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred             CCCC---CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence            7432   234455677787777777777766532  4555554

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.90  E-value=0.0022  Score=50.51  Aligned_cols=70  Identities=19%  Similarity=0.101  Sum_probs=47.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc----------cCCcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVD   99 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~----------~~~~d   99 (190)
                      ..+.+|+|+||+|.||...++.+... |.+|+++.++.+... ....+   .....+  |..+..          ..++|
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~-~~~~~---ga~~~~--~~~~~~~~~~~~~~~~~~g~D  219 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLK-IAKEY---GAEYLI--NASKEDILRQVLKFTNGKGVD  219 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHH-HHHHT---TCSEEE--ETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HHHHc---CCcEEE--eCCCchHHHHHHHHhCCCCce
Confidence            46789999999999999999999888 789999988543322 22222   111222  222211          13599


Q ss_pred             EEEEccC
Q 029640          100 QIYHLAC  106 (190)
Q Consensus       100 ~vi~~ag  106 (190)
                      +||+++|
T Consensus       220 ~vid~~g  226 (334)
T 3qwb_A          220 ASFDSVG  226 (334)
T ss_dssp             EEEECCG
T ss_pred             EEEECCC
Confidence            9999997

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.89  E-value=0.0018  Score=51.55  Aligned_cols=70  Identities=16%  Similarity=0.079  Sum_probs=47.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc---------cCCcCE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---------LIEVDQ  100 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---------~~~~d~  100 (190)
                      ..+.+|+|+||+|.||..+++.+... |.+|+++.++++... ....+. .  ...+  |..+..         ..++|+
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~-~~~~lG-a--~~~~--~~~~~~~~~~~~~~~~~g~Dv  238 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCE-ACERLG-A--KRGI--NYRSEDFAAVIKAETGQGVDI  238 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHH-HHHHHT-C--SEEE--ETTTSCHHHHHHHHHSSCEEE
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHH-HHHhcC-C--CEEE--eCCchHHHHHHHHHhCCCceE
Confidence            36789999999999999999999988 789999988544322 222221 1  1222  222211         236999


Q ss_pred             EEEccC
Q 029640          101 IYHLAC  106 (190)
Q Consensus       101 vi~~ag  106 (190)
                      ||+++|
T Consensus       239 vid~~g  244 (353)
T 4dup_A          239 ILDMIG  244 (353)
T ss_dssp             EEESCC
T ss_pred             EEECCC
Confidence            999997

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.88  E-value=0.0006  Score=53.95  Aligned_cols=70  Identities=19%  Similarity=0.091  Sum_probs=48.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc----------cCCcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVD   99 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~----------~~~~d   99 (190)
                      ..+.+|+|+|++|.||..+++.+... |.+|+++.++.+... ....+. ..  ..+  |..+..          ..++|
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~-~~~~lg-a~--~~~--~~~~~~~~~~~~~~~~~~g~D  215 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTE-ELLRLG-AA--YVI--DTSTAPLYETVMELTNGIGAD  215 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHH-HHHHHT-CS--EEE--ETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHH-HHHhCC-Cc--EEE--eCCcccHHHHHHHHhCCCCCc
Confidence            46789999999999999999999888 789999988665433 233321 11  122  222211          13699


Q ss_pred             EEEEccC
Q 029640          100 QIYHLAC  106 (190)
Q Consensus       100 ~vi~~ag  106 (190)
                      +||+++|
T Consensus       216 vvid~~g  222 (340)
T 3gms_A          216 AAIDSIG  222 (340)
T ss_dssp             EEEESSC
T ss_pred             EEEECCC
Confidence            9999997

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.88  E-value=0.0022  Score=50.38  Aligned_cols=71  Identities=15%  Similarity=0.049  Sum_probs=47.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc----------cCCcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVD   99 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~----------~~~~d   99 (190)
                      ..+++|+|+||+|.+|..+++.+... |.+|+++.++++... ....+.   ....+  |..+..          ..++|
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~-~~~~~G---a~~~~--~~~~~~~~~~~~~~~~~~g~D  211 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAA-HAKALG---AWETI--DYSHEDVAKRVLELTDGKKCP  211 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHH-HHHHHT---CSEEE--ETTTSCHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HHHHcC---CCEEE--eCCCccHHHHHHHHhCCCCce
Confidence            36789999999999999999999998 789999987544322 222221   11222  222211          13699


Q ss_pred             EEEEccCC
Q 029640          100 QIYHLACP  107 (190)
Q Consensus       100 ~vi~~ag~  107 (190)
                      +||+++|.
T Consensus       212 vvid~~g~  219 (325)
T 3jyn_A          212 VVYDGVGQ  219 (325)
T ss_dssp             EEEESSCG
T ss_pred             EEEECCCh
Confidence            99999973

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=96.88  E-value=0.00077  Score=53.97  Aligned_cols=74  Identities=19%  Similarity=0.293  Sum_probs=47.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccc--ccccCCcCEEEEccCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT--EPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~--~~~~~~~d~vi~~ag~~  108 (190)
                      .+++|+|+|+ |.+|+.+++.+... |.+|++++|+.+.... +..... ..+..+..+..  .....++|+||++++..
T Consensus       166 ~~~~VlViGa-GgvG~~aa~~a~~~-Ga~V~v~dr~~~r~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~  241 (361)
T 1pjc_A          166 KPGKVVILGG-GVVGTEAAKMAVGL-GAQVQIFDINVERLSY-LETLFG-SRVELLYSNSAEIETAVAEADLLIGAVLVP  241 (361)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESCHHHHHH-HHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH-HHHhhC-ceeEeeeCCHHHHHHHHcCCCEEEECCCcC
Confidence            4589999997 99999999999999 6799999886543222 111111 12212211111  12234799999999753

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.88  E-value=0.0051  Score=47.25  Aligned_cols=66  Identities=17%  Similarity=0.105  Sum_probs=47.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +++++|+| +|..|+.++..|++. |.+|.+..|+.++..... .+    .+....  ..+.  .+.|+|||+....
T Consensus       118 ~k~vlvlG-aGGaaraia~~L~~~-G~~v~V~nRt~~ka~~la-~~----~~~~~~--~~~l--~~~DiVInaTp~G  183 (269)
T 3phh_A          118 YQNALILG-AGGSAKALACELKKQ-GLQVSVLNRSSRGLDFFQ-RL----GCDCFM--EPPK--SAFDLIINATSAS  183 (269)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCTTHHHHH-HH----TCEEES--SCCS--SCCSEEEECCTTC
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHH-HC----CCeEec--HHHh--ccCCEEEEcccCC
Confidence            68999999 599999999999999 599999999866554433 22    123322  2222  2799999997543

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=96.84  E-value=0.00086  Score=51.80  Aligned_cols=70  Identities=19%  Similarity=0.166  Sum_probs=46.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      +.+++++|+| +|.+|+.++..|.+. |. +|.+..|+.+......      ..+.....+-......+.|+||++...
T Consensus       115 l~~k~vlvlG-aGg~g~aia~~L~~~-G~~~v~v~~R~~~~a~~la------~~~~~~~~~~~~~~~~~aDiVInaTp~  185 (277)
T 3don_A          115 IEDAYILILG-AGGASKGIANELYKI-VRPTLTVANRTMSRFNNWS------LNINKINLSHAESHLDEFDIIINTTPA  185 (277)
T ss_dssp             GGGCCEEEEC-CSHHHHHHHHHHHTT-CCSCCEEECSCGGGGTTCC------SCCEEECHHHHHHTGGGCSEEEECCC-
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHH------HhcccccHhhHHHHhcCCCEEEECccC
Confidence            4678999999 489999999999999 65 8999998754432211      122222222112234578999998653

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.82  E-value=0.01  Score=48.76  Aligned_cols=75  Identities=16%  Similarity=0.058  Sum_probs=51.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCC-cCEEEEccCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIE-VDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~-~d~vi~~ag~~  108 (190)
                      .+++|+|.|. |..|..+++.|.++ |++|.+.+++..........+. ..++.+....-.+....+ +|.||...|+.
T Consensus         8 ~~k~v~viG~-G~sG~s~A~~l~~~-G~~V~~~D~~~~~~~~~~~~L~-~~gi~~~~g~~~~~~~~~~~d~vv~spgi~   83 (451)
T 3lk7_A            8 ENKKVLVLGL-ARSGEAAARLLAKL-GAIVTVNDGKPFDENPTAQSLL-EEGIKVVCGSHPLELLDEDFCYMIKNPGIP   83 (451)
T ss_dssp             TTCEEEEECC-TTTHHHHHHHHHHT-TCEEEEEESSCGGGCHHHHHHH-HTTCEEEESCCCGGGGGSCEEEEEECTTSC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhC-CCEEEEEeCCcccCChHHHHHH-hCCCEEEECCChHHhhcCCCCEEEECCcCC
Confidence            6799999996 88999999999999 8999999886532222222222 235666554433333345 89999998754

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.81  E-value=0.00094  Score=51.87  Aligned_cols=71  Identities=15%  Similarity=0.067  Sum_probs=48.3

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccc-c----ccCCcCEEEE
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-P----LLIEVDQIYH  103 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~----~~~~~d~vi~  103 (190)
                      +..+.+|+|+|++|.+|..+++.+... |.+|+++.++++.... ...+. ..  ..+  |..+ .    ...++|+||+
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~-~~~~g-a~--~~~--~~~~~~~~~~~~~~~d~vid  195 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLAL-PLALG-AE--EAA--TYAEVPERAKAWGGLDLVLE  195 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHH-HHHTT-CS--EEE--EGGGHHHHHHHTTSEEEEEE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH-HHhcC-CC--EEE--ECCcchhHHHHhcCceEEEE
Confidence            346899999999999999999998888 7899999886554432 22221 11  122  3222 1    1257999999


Q ss_pred             ccCC
Q 029640          104 LACP  107 (190)
Q Consensus       104 ~ag~  107 (190)
                       +|.
T Consensus       196 -~g~  198 (302)
T 1iz0_A          196 -VRG  198 (302)
T ss_dssp             -CSC
T ss_pred             -CCH
Confidence             873

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.80  E-value=0.0025  Score=47.59  Aligned_cols=67  Identities=6%  Similarity=-0.000  Sum_probs=49.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------cCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~~d~vi~~  104 (190)
                      ..++++|+|+ |.+|+.+++.|.+. ++ |+++.++++    ....+.  .++.++.+|.++..      ..+.|.||.+
T Consensus         8 ~~~~viI~G~-G~~G~~la~~L~~~-g~-v~vid~~~~----~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   78 (234)
T 2aef_A            8 KSRHVVICGW-SESTLECLRELRGS-EV-FVLAEDENV----RKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVD   78 (234)
T ss_dssp             --CEEEEESC-CHHHHHHHHHSTTS-EE-EEEESCGGG----HHHHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEEC
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHhC-Ce-EEEEECCHH----HHHHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEc
Confidence            3478999995 99999999999998 77 888877533    222222  35788999998753      3468888877


Q ss_pred             cC
Q 029640          105 AC  106 (190)
Q Consensus       105 ag  106 (190)
                      .+
T Consensus        79 ~~   80 (234)
T 2aef_A           79 LE   80 (234)
T ss_dssp             CS
T ss_pred             CC
Confidence            63

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.79  E-value=0.0047  Score=46.88  Aligned_cols=102  Identities=11%  Similarity=0.118  Sum_probs=61.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +.+++|+|.| .|.+|.++++.|+..|-.++.+++++.-...+.                      +..+-+..++..+.
T Consensus        26 l~~~~VlvvG-~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  104 (251)
T 1zud_1           26 LLDSQVLIIG-LGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQ  104 (251)
T ss_dssp             HHTCEEEEEC-CSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HhcCcEEEEc-cCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence            3678999999 577999999999999446888876643211110                      11111122344444


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      .++...    .+.++|+||.+..         +..        .-..+.+.|.+.++.+|..+...
T Consensus       105 ~~~~~~~~~~~~~~~DvVi~~~d---------~~~--------~r~~l~~~~~~~~~p~i~~~~~g  153 (251)
T 1zud_1          105 QRLTGEALKDAVARADVVLDCTD---------NMA--------TRQEINAACVALNTPLITASAVG  153 (251)
T ss_dssp             SCCCHHHHHHHHHHCSEEEECCS---------SHH--------HHHHHHHHHHHTTCCEEEEEEEB
T ss_pred             ccCCHHHHHHHHhcCCEEEECCC---------CHH--------HHHHHHHHHHHhCCCEEEEeccc
Confidence            444332    2235899998862         111        12346677777777888776544

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.79  E-value=0.0097  Score=47.74  Aligned_cols=97  Identities=14%  Similarity=0.102  Sum_probs=53.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCC---CeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-ccCCcCEEEEccCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEK---NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-LLIEVDQIYHLACP  107 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~d~vi~~ag~  107 (190)
                      |++|.|.||+|++|+.+++.|+.+..   ..+..+..+....  .+..+. ...+...  |..+. ...++|+||.|.|.
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~--~v~~~~-g~~i~~~--~~~~~~~~~~~DvVf~a~g~   75 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ--AAPSFG-GTTGTLQ--DAFDLEALKALDIIVTCQGG   75 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS--BCCGGG-TCCCBCE--ETTCHHHHHTCSEEEECSCH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCC--CccccC-CCceEEE--ecCChHHhcCCCEEEECCCc
Confidence            46899999999999999995555423   2444444432221  111111 1122222  22221 13579999999862


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceec
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~  151 (190)
                      .                  .+..+...+.+.+.+.++++-++.|
T Consensus        76 ~------------------~s~~~a~~~~~~G~k~vVID~ss~~  101 (367)
T 1t4b_A           76 D------------------YTNEIYPKLRESGWQGYWIDAASSL  101 (367)
T ss_dssp             H------------------HHHHHHHHHHHTTCCCEEEECSSTT
T ss_pred             h------------------hHHHHHHHHHHCCCCEEEEcCChhh
Confidence            1                  1234555566677654555544433

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.78  E-value=0.0046  Score=47.60  Aligned_cols=75  Identities=25%  Similarity=0.281  Sum_probs=51.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhhhhh----------------------cCCce-EE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWI----------------------GHPRF-EL   85 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~----------------------~~~~~-~~   85 (190)
                      +++++|+|.| +|-+|...++.|++. |++|++++....... ..+..+.                      ....+ .+
T Consensus        11 l~~k~VLVVG-gG~va~rka~~Ll~~-Ga~VtViap~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~   88 (274)
T 1kyq_A           11 LKDKRILLIG-GGEVGLTRLYKLMPT-GCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKNEIYEY   88 (274)
T ss_dssp             CTTCEEEEEE-ESHHHHHHHHHHGGG-TCEEEEEEEEECTTHHHHHCGGGC-----------CEEECTTCCTTSCCCSEE
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHHhC-CCEEEEEcCCCCcchhHHHHHHHhccccccccchhhcccccccccccCCeeEE
Confidence            4789999999 789999999999999 899999876543221 1222222                      22355 77


Q ss_pred             EeccccccccC------CcCEEEEccC
Q 029640           86 IRHDVTEPLLI------EVDQIYHLAC  106 (190)
Q Consensus        86 ~~~D~~~~~~~------~~d~vi~~ag  106 (190)
                      +..+.....+.      +.|.||-+.+
T Consensus        89 i~~~~~~~dL~~l~~~~~adlViaat~  115 (274)
T 1kyq_A           89 IRSDFKDEYLDLENENDAWYIIMTCIP  115 (274)
T ss_dssp             ECSSCCGGGGCCSSTTCCEEEEEECCS
T ss_pred             EcCCCCHHHHhhcccCCCeEEEEEcCC
Confidence            77766655555      6787776653

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.77  E-value=0.0014  Score=48.74  Aligned_cols=41  Identities=27%  Similarity=0.372  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEE-EcCCCCCC
Q 029640           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNYFTGS   70 (190)
Q Consensus        28 ~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~-~~r~~~~~   70 (190)
                      .++++|+|.|+| +|.+|..+++.|.+. +++|.+ .+|+.+..
T Consensus        19 ~~m~mmkI~IIG-~G~mG~~la~~l~~~-g~~V~~v~~r~~~~~   60 (220)
T 4huj_A           19 YFQSMTTYAIIG-AGAIGSALAERFTAA-QIPAIIANSRGPASL   60 (220)
T ss_dssp             TGGGSCCEEEEE-CHHHHHHHHHHHHHT-TCCEEEECTTCGGGG
T ss_pred             hhhcCCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEECCCHHHH
Confidence            335678999999 999999999999998 788888 77755443

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=96.75  E-value=0.0034  Score=50.44  Aligned_cols=69  Identities=22%  Similarity=0.250  Sum_probs=39.7

Q ss_pred             CEEEEEcccchHHHHHHH-HHHhcC--CCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccc-cccCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVD-KLMENE--KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~-~L~~~~--~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~d~vi~~ag  106 (190)
                      ++|.|.|+||++|..+++ .|.++.  ..++..+..+.....  +..+.+ ....+  .+..+ ..+.++|+||.|.+
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~--~~~~~~-~~~~~--~~~~~~~~~~~~Dvvf~a~~   73 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVP--APNFGK-DAGML--HDAFDIESLKQLDAVITCQG   73 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSB--CCCSSS-CCCBC--EETTCHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCcC--HHHhCC-CceEE--EecCChhHhccCCEEEECCC
Confidence            579999999999999999 777663  235444433222211  111111 11122  23322 23468999999986

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=96.75  E-value=0.017  Score=47.77  Aligned_cols=90  Identities=20%  Similarity=0.257  Sum_probs=57.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCC---eEEEEcCCCCCChhhhhhhhcCCceEEEecccccc--------ccCCcCEE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKN---EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP--------LLIEVDQI  101 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~--------~~~~~d~v  101 (190)
                      ++|+|.| .|.||+.++..|+++.+.   .|++.++..... + +.+..   ++.+...++++.        .+.+.|+|
T Consensus        14 ~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~-~-~~~~~---g~~~~~~~Vdadnv~~~l~aLl~~~DvV   87 (480)
T 2ph5_A           14 NRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV-D-VAQQY---GVSFKLQQITPQNYLEVIGSTLEENDFL   87 (480)
T ss_dssp             SCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC-C-HHHHH---TCEEEECCCCTTTHHHHTGGGCCTTCEE
T ss_pred             CCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhh-h-HHhhc---CCceeEEeccchhHHHHHHHHhcCCCEE
Confidence            6799999 999999999999998544   688877654442 2 11211   234444444322        12235999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEe
Q 029640          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS  146 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vS  146 (190)
                      ||++-...                  ...++++|.+.|+.+|=++
T Consensus        88 IN~s~~~~------------------~l~Im~acleaGv~YlDTa  114 (480)
T 2ph5_A           88 IDVSIGIS------------------SLALIILCNQKGALYINAA  114 (480)
T ss_dssp             EECCSSSC------------------HHHHHHHHHHHTCEEEESS
T ss_pred             EECCcccc------------------CHHHHHHHHHcCCCEEECC
Confidence            98652111                  2468999999987766433

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=96.74  E-value=0.015  Score=45.12  Aligned_cols=100  Identities=15%  Similarity=0.161  Sum_probs=63.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh---------------------hhhhhhhcCCceEEEec
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK---------------------DNLRKWIGHPRFELIRH   88 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~---------------------~~~~~~~~~~~~~~~~~   88 (190)
                      +...+|+|.| .|.+|..+++.|+..+-.++.+++.+.-...                     ..+..+-+..++..+..
T Consensus        34 L~~~~VlVvG-aGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~  112 (292)
T 3h8v_A           34 IRTFAVAIVG-VGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY  112 (292)
T ss_dssp             GGGCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECC
T ss_pred             HhCCeEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecc
Confidence            3668999999 8999999999999995468888876542111                     11111212235666665


Q ss_pred             cccccc----c------------CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEec
Q 029640           89 DVTEPL----L------------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus        89 D~~~~~----~------------~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS  147 (190)
                      ++.+..    +            .++|+||.+..         +.        ..-..+-++|.+.++.+|+.+.
T Consensus       113 ~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D---------n~--------~~R~~in~~c~~~~~Pli~~gv  170 (292)
T 3h8v_A          113 NITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD---------NF--------EARMTINTACNELGQTWMESGV  170 (292)
T ss_dssp             CTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS---------SH--------HHHHHHHHHHHHHTCCEEEEEE
T ss_pred             cCCcHHHHHHHhhhhcccccccCCCCCEEEECCc---------ch--------hhhhHHHHHHHHhCCCEEEeee
Confidence            555311    1            46899987762         11        1123466788888888887654

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.73  E-value=0.0042  Score=49.14  Aligned_cols=72  Identities=18%  Similarity=0.147  Sum_probs=46.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc---------c-CCcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---------L-IEVD   99 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---------~-~~~d   99 (190)
                      ..+++|+|+|++|.||..+++.+....|.+|+++.++++... ....+. . . ..+  |..+..         . .++|
T Consensus       169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~-~~~~~g-~-~-~~~--~~~~~~~~~~~~~~~~~~~~d  242 (347)
T 1jvb_A          169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVE-AAKRAG-A-D-YVI--NASMQDPLAEIRRITESKGVD  242 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHH-HHHHHT-C-S-EEE--ETTTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHH-HHHHhC-C-C-EEe--cCCCccHHHHHHHHhcCCCce
Confidence            367899999999999999999988873568988887543322 222221 1 1 122  222211         1 3699


Q ss_pred             EEEEccCC
Q 029640          100 QIYHLACP  107 (190)
Q Consensus       100 ~vi~~ag~  107 (190)
                      +||+++|.
T Consensus       243 ~vi~~~g~  250 (347)
T 1jvb_A          243 AVIDLNNS  250 (347)
T ss_dssp             EEEESCCC
T ss_pred             EEEECCCC
Confidence            99999974

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.72  E-value=0.0037  Score=49.86  Aligned_cols=37  Identities=24%  Similarity=0.180  Sum_probs=32.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ..+.+|+|+||+|.||..+++.+... |.+|+++.+++
T Consensus       162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~  198 (362)
T 2c0c_A          162 SEGKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSD  198 (362)
T ss_dssp             CTTCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCH
Confidence            46789999999999999999999888 78999998753

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.72  E-value=0.0033  Score=49.69  Aligned_cols=70  Identities=13%  Similarity=0.058  Sum_probs=47.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc----------cCCcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVD   99 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~----------~~~~d   99 (190)
                      ..+++|+|+|++|.+|..+++.+... |.+|+++.++++... ....+ ...  ..  .|..+..          ..++|
T Consensus       165 ~~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~-~~~~~-ga~--~~--~d~~~~~~~~~~~~~~~~~~~d  237 (343)
T 2eih_A          165 RPGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLR-RAKAL-GAD--ET--VNYTHPDWPKEVRRLTGGKGAD  237 (343)
T ss_dssp             CTTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHH-HHHHH-TCS--EE--EETTSTTHHHHHHHHTTTTCEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HHHhc-CCC--EE--EcCCcccHHHHHHHHhCCCCce
Confidence            36789999999999999999999988 789999988543322 12222 111  12  2333221          12699


Q ss_pred             EEEEccC
Q 029640          100 QIYHLAC  106 (190)
Q Consensus       100 ~vi~~ag  106 (190)
                      +||+++|
T Consensus       238 ~vi~~~g  244 (343)
T 2eih_A          238 KVVDHTG  244 (343)
T ss_dssp             EEEESSC
T ss_pred             EEEECCC
Confidence            9999997

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.69  E-value=0.003  Score=50.45  Aligned_cols=66  Identities=15%  Similarity=0.119  Sum_probs=45.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC---CCChhhhhhhhcCCceEEEeccccc----c---ccCCcCEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF---TGSKDNLRKWIGHPRFELIRHDVTE----P---LLIEVDQI  101 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~---~~~~~~~~~~~~~~~~~~~~~D~~~----~---~~~~~d~v  101 (190)
                      +++|+|+|+ |.||..+++.+... |.+|+++.++.   +.. +....+    +.+.+  | .+    .   ...++|+|
T Consensus       181 g~~VlV~Ga-G~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~-~~~~~~----ga~~v--~-~~~~~~~~~~~~~~~d~v  250 (366)
T 2cdc_A          181 CRKVLVVGT-GPIGVLFTLLFRTY-GLEVWMANRREPTEVEQ-TVIEET----KTNYY--N-SSNGYDKLKDSVGKFDVI  250 (366)
T ss_dssp             TCEEEEESC-HHHHHHHHHHHHHH-TCEEEEEESSCCCHHHH-HHHHHH----TCEEE--E-CTTCSHHHHHHHCCEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhC-CCEEEEEeCCccchHHH-HHHHHh----CCcee--c-hHHHHHHHHHhCCCCCEE
Confidence            899999999 99999999999988 77999998865   221 222222    22333  3 22    1   01369999


Q ss_pred             EEccCC
Q 029640          102 YHLACP  107 (190)
Q Consensus       102 i~~ag~  107 (190)
                      |+++|.
T Consensus       251 id~~g~  256 (366)
T 2cdc_A          251 IDATGA  256 (366)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999974

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=96.65  E-value=0.0025  Score=46.74  Aligned_cols=70  Identities=17%  Similarity=0.174  Sum_probs=44.7

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEeccccccccCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      |+|+|+|++|.+|+.+++.|++. +++|.+..|+.+..........   ....+..  .|+. +...++|+||++..
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~D~Vi~~~~   73 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATL-GHEIVVGSRREEKAEAKAAEYRRIAGDASITG--MKNE-DAAEACDIAVLTIP   73 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSHHHHHHHHHHHHHHHSSCCEEE--EEHH-HHHHHCSEEEECSC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccccccCCCCh--hhHH-HHHhcCCEEEEeCC
Confidence            57999999999999999999998 7899999886433222111110   0011221  1211 22356899999973

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.61  E-value=0.0013  Score=53.01  Aligned_cols=75  Identities=15%  Similarity=0.077  Sum_probs=47.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccc--cccccCCcCEEEEccCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV--TEPLLIEVDQIYHLACP  107 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~d~vi~~ag~  107 (190)
                      +.+++|+|+|+ |.||+.+++.+... |.+|++.+|+...... +...... .+.....+.  .++...++|+||++++.
T Consensus       166 l~g~~V~ViG~-G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~-~~~~~g~-~~~~~~~~~~~l~~~l~~aDvVi~~~~~  241 (377)
T 2vhw_A          166 VEPADVVVIGA-GTAGYNAARIANGM-GATVTVLDINIDKLRQ-LDAEFCG-RIHTRYSSAYELEGAVKRADLVIGAVLV  241 (377)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESCHHHHHH-HHHHTTT-SSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhC-CCEEEEEeCCHHHHHH-HHHhcCC-eeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence            46799999996 99999999999998 7899999885433221 1111111 111111011  11223469999999874


Q ss_pred             C
Q 029640          108 A  108 (190)
Q Consensus       108 ~  108 (190)
                      .
T Consensus       242 p  242 (377)
T 2vhw_A          242 P  242 (377)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=96.61  E-value=0.0051  Score=45.44  Aligned_cols=66  Identities=11%  Similarity=0.097  Sum_probs=44.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      .+++|.|+| +|.+|+.+++.|.+. +++|.+.+|+.+.    ...+... ++...  |.. +...++|+||.+..
T Consensus        27 ~~~~I~iiG-~G~~G~~la~~l~~~-g~~V~~~~r~~~~----~~~~~~~-g~~~~--~~~-~~~~~~DvVi~av~   92 (215)
T 2vns_A           27 EAPKVGILG-SGDFARSLATRLVGS-GFKVVVGSRNPKR----TARLFPS-AAQVT--FQE-EAVSSPEVIFVAVF   92 (215)
T ss_dssp             --CCEEEEC-CSHHHHHHHHHHHHT-TCCEEEEESSHHH----HHHHSBT-TSEEE--EHH-HHTTSCSEEEECSC
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHC-CCEEEEEeCCHHH----HHHHHHc-CCcee--cHH-HHHhCCCEEEECCC
Confidence            347899999 899999999999998 7899998885332    2222221 33332  222 23457899998874

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=96.58  E-value=0.0089  Score=45.98  Aligned_cols=65  Identities=15%  Similarity=0.273  Sum_probs=44.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +|+|.|+|++|.+|..+++.|.+. |++|.+.+|+.+..    ..+... ++..  .|. .+...++|+||.+.
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~-g~~V~~~~r~~~~~----~~~~~~-g~~~--~~~-~~~~~~aDvVi~av   75 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDS-AHHLAAIEIAPEGR----DRLQGM-GIPL--TDG-DGWIDEADVVVLAL   75 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHS-SSEEEEECCSHHHH----HHHHHT-TCCC--CCS-SGGGGTCSEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCHHHH----HHHHhc-CCCc--CCH-HHHhcCCCEEEEcC
Confidence            469999998799999999999998 78999988854322    222111 1211  122 12345799999887

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.57  E-value=0.0014  Score=51.43  Aligned_cols=71  Identities=17%  Similarity=0.198  Sum_probs=46.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccc---cccCCcCEEEEccC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE---PLLIEVDQIYHLAC  106 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~d~vi~~ag  106 (190)
                      ..+.+|+|+||+|.+|...++.+... |.+|+++.+..+  .+....+. ..  ..+..+-.+   ....++|+||.+.|
T Consensus       151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~-Ga~vi~~~~~~~--~~~~~~lG-a~--~~i~~~~~~~~~~~~~g~D~v~d~~g  224 (321)
T 3tqh_A          151 KQGDVVLIHAGAGGVGHLAIQLAKQK-GTTVITTASKRN--HAFLKALG-AE--QCINYHEEDFLLAISTPVDAVIDLVG  224 (321)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEECHHH--HHHHHHHT-CS--EEEETTTSCHHHHCCSCEEEEEESSC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHc-CCEEEEEeccch--HHHHHHcC-CC--EEEeCCCcchhhhhccCCCEEEECCC
Confidence            46799999999999999999999888 778888765322  22233221 11  222221111   22357999999987

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.54  E-value=0.0023  Score=51.03  Aligned_cols=34  Identities=21%  Similarity=0.401  Sum_probs=28.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~   64 (190)
                      .+.+|.|.||+|++|..+++.|.++...++..+.
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~   45 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLS   45 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEe
Confidence            3568999999999999999999998655666554

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=96.53  E-value=0.0027  Score=51.62  Aligned_cols=73  Identities=19%  Similarity=0.282  Sum_probs=47.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      ..+++|+|+|+ |.+|+.+++.|... |. +|++..|+.+........+    +...+..+-......++|+||.+.+..
T Consensus       165 l~g~~VlIiGa-G~iG~~~a~~l~~~-G~~~V~v~~r~~~ra~~la~~~----g~~~~~~~~l~~~l~~aDvVi~at~~~  238 (404)
T 1gpj_A          165 LHDKTVLVVGA-GEMGKTVAKSLVDR-GVRAVLVANRTYERAVELARDL----GGEAVRFDELVDHLARSDVVVSATAAP  238 (404)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHH-CCSEEEEECSSHHHHHHHHHHH----TCEECCGGGHHHHHHTCSEEEECCSSS
T ss_pred             ccCCEEEEECh-HHHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHc----CCceecHHhHHHHhcCCCEEEEccCCC
Confidence            47899999995 99999999999998 66 8999988643322222222    122221111112235799999998643

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=96.49  E-value=0.024  Score=48.67  Aligned_cols=101  Identities=14%  Similarity=0.169  Sum_probs=64.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh----------------------hhhhcCCceEEEec
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----------------------RKWIGHPRFELIRH   88 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~----------------------~~~~~~~~~~~~~~   88 (190)
                      .+.+|+|.| .|.+|.++++.|+..|-.++.+++...-...+.-                      ..+-+..++..+..
T Consensus        16 ~~s~VlVVG-aGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~   94 (640)
T 1y8q_B           16 AGGRVLVVG-AGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHD   94 (640)
T ss_dssp             HHCEEEEEC-CSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEES
T ss_pred             hcCeEEEEC-cCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEec
Confidence            568999999 7999999999999995468888876532221111                      11112235666666


Q ss_pred             ccccc-----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640           89 DVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus        89 D~~~~-----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      ++...     .+.++|+||.+..         +        ...-..+-+.|..+++.+|..++.+
T Consensus        95 ~i~~~~~~~~~~~~~DlVvda~D---------n--------~~aR~~ln~~c~~~~iPlI~~g~~G  143 (640)
T 1y8q_B           95 SIMNPDYNVEFFRQFILVMNALD---------N--------RAARNHVNRMCLAADVPLIESGTAG  143 (640)
T ss_dssp             CTTSTTSCHHHHTTCSEEEECCS---------C--------HHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred             ccchhhhhHhhhcCCCEEEECCC---------C--------HHHHHHHHHHHHHcCCCEEEEEEec
Confidence            66432     2357999998852         1        1122345677888888888776644

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.47  E-value=0.0043  Score=47.99  Aligned_cols=67  Identities=21%  Similarity=0.261  Sum_probs=45.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcCCceEEEec-cccccccCCcCEEEEccCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~d~vi~~ag~  107 (190)
                      ..+++++|+| +|..|+.++..|.+. |. +|+++.|+.+..    ..+..  .+..... |+.+  . +.|+|||+...
T Consensus       120 ~~~k~vlvlG-aGGaaraia~~L~~~-G~~~v~v~nRt~~ka----~~La~--~~~~~~~~~l~~--l-~~DivInaTp~  188 (282)
T 3fbt_A          120 IKNNICVVLG-SGGAARAVLQYLKDN-FAKDIYVVTRNPEKT----SEIYG--EFKVISYDELSN--L-KGDVIINCTPK  188 (282)
T ss_dssp             CTTSEEEEEC-SSTTHHHHHHHHHHT-TCSEEEEEESCHHHH----HHHCT--TSEEEEHHHHTT--C-CCSEEEECSST
T ss_pred             ccCCEEEEEC-CcHHHHHHHHHHHHc-CCCEEEEEeCCHHHH----HHHHH--hcCcccHHHHHh--c-cCCEEEECCcc
Confidence            4679999999 578899999999999 65 899999864432    22221  2222222 2322  3 89999999754

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=96.47  E-value=0.005  Score=49.56  Aligned_cols=70  Identities=23%  Similarity=0.246  Sum_probs=40.4

Q ss_pred             CCEEEEEcccchHHHHHHH-HHHhcC--CCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccc-cccCCcCEEEEccC
Q 029640           32 NMRILVTGGAGFIGSHLVD-KLMENE--KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PLLIEVDQIYHLAC  106 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~-~L~~~~--~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~d~vi~~ag  106 (190)
                      .++|.|.|+||++|..+++ .|.++.  ..++..+..+.....  +..+.+ ....+  .+..+ ..+.++|+||.|.+
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~--~~~~~~-~~~~v--~~~~~~~~~~~vDvvf~a~~   77 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGK--APSFAK-NETTL--KDATSIDDLKKCDVIITCQG   77 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTTSB--CCTTCC-SCCBC--EETTCHHHHHTCSEEEECSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcCCC--HHHcCC-CceEE--EeCCChhHhcCCCEEEECCC
Confidence            4789999999999999999 666663  235444433222211  111111 11111  23322 23468999999986

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.46  E-value=0.0018  Score=51.73  Aligned_cols=70  Identities=14%  Similarity=0.112  Sum_probs=45.8

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-----ccCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~d~vi~~a  105 (190)
                      .+.+|+|+|+ |.||..+++.+... |.+|+++.++++........+. .  ...+  |..+.     ...++|+||+++
T Consensus       187 ~g~~VlV~Ga-G~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~lG-a--~~v~--~~~~~~~~~~~~~~~D~vid~~  259 (366)
T 1yqd_A          187 PGKHIGIVGL-GGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKNFG-A--DSFL--VSRDQEQMQAAAGTLDGIIDTV  259 (366)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHTSC-C--SEEE--ETTCHHHHHHTTTCEEEEEECC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcC-C--ceEE--eccCHHHHHHhhCCCCEEEECC
Confidence            6789999995 99999999999888 7899998876543322111221 1  1222  22221     123699999999


Q ss_pred             CC
Q 029640          106 CP  107 (190)
Q Consensus       106 g~  107 (190)
                      |.
T Consensus       260 g~  261 (366)
T 1yqd_A          260 SA  261 (366)
T ss_dssp             SS
T ss_pred             Cc
Confidence            74

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=96.44  E-value=0.014  Score=45.67  Aligned_cols=38  Identities=24%  Similarity=0.368  Sum_probs=32.2

Q ss_pred             cCCCE-EEEE-ccc-----------------chHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           30 QSNMR-ILVT-GGA-----------------GFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~-vlIt-G~~-----------------G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      +.|++ |+|| |+|                 |-.|.++++.++.+ |+.|+.+.+...
T Consensus        34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~-Ga~V~lv~g~~s   90 (313)
T 1p9o_A           34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAA-GYGVLFLYRARS   90 (313)
T ss_dssp             HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHT-TCEEEEEEETTS
T ss_pred             hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHC-CCEEEEEecCCC
Confidence            47788 9999 666                 88999999999999 899998887543

>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae}

Probab=96.42  E-value=0.023  Score=51.29  Aligned_cols=106  Identities=11%  Similarity=0.137  Sum_probs=68.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +.+.+|+|.| .|.+|..+++.|+..|-..+.+++...-...+.                      +..+-+...+..+.
T Consensus        25 L~~s~VlIvG-~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lNP~v~v~~~~  103 (1015)
T 3cmm_A           25 MQTSNVLILG-LKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLD  103 (1015)
T ss_dssp             HTTCEEEEEC-CSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSCTTSCEEECC
T ss_pred             HhcCEEEEEC-CChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHHCCCCeEEEec
Confidence            3678999999 789999999999999546888887653222111                      11111223566665


Q ss_pred             ccccccccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           88 HDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        88 ~D~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      .++....+.++|+||.+...                |...-..+.+.|.++++.+|..++.+.+|
T Consensus       104 ~~l~~~~l~~~DvVv~~~d~----------------~~~~r~~ln~~c~~~~iplI~~~~~G~~G  152 (1015)
T 3cmm_A          104 SLDDVTQLSQFQVVVATDTV----------------SLEDKVKINEFCHSSGIRFISSETRGLFG  152 (1015)
T ss_dssp             CCCCSTTGGGCSEEEECTTS----------------CHHHHHHHHHHHHHHTCEEEEEEEETTEE
T ss_pred             CCCCHHHHhcCCEEEEcCCC----------------CHHHHHHHHHHHHHcCCCEEEEEecccEE
Confidence            66655555679999976420                11122456778888888888887655444

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=96.42  E-value=0.0031  Score=50.51  Aligned_cols=71  Identities=20%  Similarity=0.212  Sum_probs=46.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-------ccCCcCEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-------LLIEVDQIY  102 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-------~~~~~d~vi  102 (190)
                      ..+.+|+|+||+|.||..+++.+... |.+|+++.+ .+ ..+....+. .  ...+  |..+.       ...++|+||
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~~-~~-~~~~~~~lG-a--~~v~--~~~~~~~~~~~~~~~g~D~vi  253 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVCS-QD-ASELVRKLG-A--DDVI--DYKSGSVEEQLKSLKPFDFIL  253 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEC-GG-GHHHHHHTT-C--SEEE--ETTSSCHHHHHHTSCCBSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEeC-hH-HHHHHHHcC-C--CEEE--ECCchHHHHHHhhcCCCCEEE
Confidence            36789999999999999999998888 778888774 22 222232221 1  1222  22221       113699999


Q ss_pred             EccCCC
Q 029640          103 HLACPA  108 (190)
Q Consensus       103 ~~ag~~  108 (190)
                      +++|..
T Consensus       254 d~~g~~  259 (375)
T 2vn8_A          254 DNVGGS  259 (375)
T ss_dssp             ESSCTT
T ss_pred             ECCCCh
Confidence            999854

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.39  E-value=0.0083  Score=46.31  Aligned_cols=38  Identities=13%  Similarity=0.177  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      .+.|++++|.|+++.+|+.++..|+.. +..|+++.|+.
T Consensus       157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~-gAtVtv~h~~t  194 (285)
T 3p2o_A          157 DLEGKDAVIIGASNIVGRPMATMLLNA-GATVSVCHIKT  194 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCc
Confidence            358999999999999999999999999 88999987653

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=96.37  E-value=0.013  Score=46.52  Aligned_cols=38  Identities=11%  Similarity=0.019  Sum_probs=31.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ..+.+|+|+|++|.+|...++.+... |..++++.+..+
T Consensus       166 ~~g~~VlV~Ga~G~vG~~aiqlak~~-Ga~vi~~~~~~~  203 (357)
T 1zsy_A          166 QPGDSVIQNASNSGVGQAVIQIAAAL-GLRTINVVRDRP  203 (357)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEECCCS
T ss_pred             CCCCEEEEeCCcCHHHHHHHHHHHHc-CCEEEEEecCcc
Confidence            36789999999999999999988888 777777765443

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=96.37  E-value=0.018  Score=44.13  Aligned_cols=71  Identities=17%  Similarity=0.165  Sum_probs=47.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +.+++++|.| .|.+|+.++..|.+. +.+|.+..|+.+.    ...+...-++.... |+. +...++|+||++....
T Consensus       127 ~~~~~v~iiG-aG~~g~aia~~L~~~-g~~V~v~~r~~~~----~~~l~~~~g~~~~~-~~~-~~~~~aDiVi~atp~~  197 (275)
T 2hk9_A          127 VKEKSILVLG-AGGASRAVIYALVKE-GAKVFLWNRTKEK----AIKLAQKFPLEVVN-SPE-EVIDKVQVIVNTTSVG  197 (275)
T ss_dssp             GGGSEEEEEC-CSHHHHHHHHHHHHH-TCEEEEECSSHHH----HHHHTTTSCEEECS-CGG-GTGGGCSEEEECSSTT
T ss_pred             cCCCEEEEEC-chHHHHHHHHHHHHc-CCEEEEEECCHHH----HHHHHHHcCCeeeh-hHH-hhhcCCCEEEEeCCCC
Confidence            3678999999 689999999999999 6799998885432    22222111233221 222 2345799999998644

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=96.36  E-value=0.0058  Score=47.51  Aligned_cols=71  Identities=11%  Similarity=0.061  Sum_probs=47.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      +.+++++|.| .|.+|+.+++.|... |.+|++.+|+.+... .+..    .++..+..+-.++...+.|+||.+...
T Consensus       155 l~g~~v~IiG-~G~iG~~~a~~l~~~-G~~V~~~d~~~~~~~-~~~~----~g~~~~~~~~l~~~l~~aDvVi~~~p~  225 (300)
T 2rir_A          155 IHGSQVAVLG-LGRTGMTIARTFAAL-GANVKVGARSSAHLA-RITE----MGLVPFHTDELKEHVKDIDICINTIPS  225 (300)
T ss_dssp             STTSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSHHHHH-HHHH----TTCEEEEGGGHHHHSTTCSEEEECCSS
T ss_pred             CCCCEEEEEc-ccHHHHHHHHHHHHC-CCEEEEEECCHHHHH-HHHH----CCCeEEchhhHHHHhhCCCEEEECCCh
Confidence            4789999999 699999999999988 789999988643211 1111    123333222222345679999998753

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=96.34  E-value=0.0089  Score=47.30  Aligned_cols=70  Identities=10%  Similarity=-0.005  Sum_probs=46.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc--------cCCcCEEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQIYH  103 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~d~vi~  103 (190)
                      +++++|+||+|.||...++.+... |.+|+++.++++..+ ....+. .  ...+..+-.+..        ..++|+||+
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~-~~~~~G-a--~~~~~~~~~~~~~~v~~~~~~~g~D~vid  239 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEE-GFRPIVTVRRDEQIA-LLKDIG-A--AHVLNEKAPDFEATLREVMKAEQPRIFLD  239 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESCGGGHH-HHHHHT-C--SEEEETTSTTHHHHHHHHHHHHCCCEEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HHHHcC-C--CEEEECCcHHHHHHHHHHhcCCCCcEEEE
Confidence            379999999999999999999988 789999987654432 222221 1  122221111110        136999999


Q ss_pred             ccC
Q 029640          104 LAC  106 (190)
Q Consensus       104 ~ag  106 (190)
                      ++|
T Consensus       240 ~~g  242 (349)
T 3pi7_A          240 AVT  242 (349)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            997

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.34  E-value=0.0044  Score=49.31  Aligned_cols=72  Identities=19%  Similarity=0.059  Sum_probs=47.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEec----cccccccCCcCEEEEcc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH----DVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~----D~~~~~~~~~d~vi~~a  105 (190)
                      ..+.+|+|+|+ |.+|..+++.+... |.+|+++.++++... ....+. ..  ..+..    |+.+....++|+||.++
T Consensus       178 ~~g~~VlV~Ga-G~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~-~~~~lG-a~--~v~~~~~~~~~~~~~~~~~D~vid~~  251 (360)
T 1piw_A          178 GPGKKVGIVGL-GGIGSMGTLISKAM-GAETYVISRSSRKRE-DAMKMG-AD--HYIATLEEGDWGEKYFDTFDLIVVCA  251 (360)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHH-TCEEEEEESSSTTHH-HHHHHT-CS--EEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEcCCHHHHH-HHHHcC-CC--EEEcCcCchHHHHHhhcCCCEEEECC
Confidence            36789999998 99999999998888 778999988655433 223322 11  22221    11111114699999999


Q ss_pred             CC
Q 029640          106 CP  107 (190)
Q Consensus       106 g~  107 (190)
                      |.
T Consensus       252 g~  253 (360)
T 1piw_A          252 SS  253 (360)
T ss_dssp             SC
T ss_pred             CC
Confidence            75

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.33  E-value=0.0033  Score=51.97  Aligned_cols=68  Identities=24%  Similarity=0.495  Sum_probs=51.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------CCcCEEEEcc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------~~~d~vi~~a  105 (190)
                      .|+|+|.| .|-+|+.+++.|..+ +++|++++++    ++.+..+...-.+..+.+|.+++..      .+.|++|-+-
T Consensus         3 ~M~iiI~G-~G~vG~~la~~L~~~-~~~v~vId~d----~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t   76 (461)
T 4g65_A            3 AMKIIILG-AGQVGGTLAENLVGE-NNDITIVDKD----GDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVT   76 (461)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHTCST-TEEEEEEESC----HHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECC
T ss_pred             cCEEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECC----HHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEc
Confidence            48899999 799999999999998 8999999874    3334443333367888999998753      4588887543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.31  E-value=0.018  Score=45.12  Aligned_cols=69  Identities=14%  Similarity=0.132  Sum_probs=45.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC--eEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.++|.|+| .|.+|..+++.|.+. |+  +|.+.+|+++...    .......+.....|+.+....++|+||.+.
T Consensus        32 ~~~kI~IIG-~G~mG~slA~~l~~~-G~~~~V~~~dr~~~~~~----~a~~~G~~~~~~~~~~~~~~~~aDvVilav  102 (314)
T 3ggo_A           32 SMQNVLIVG-VGFMGGSFAKSLRRS-GFKGKIYGYDINPESIS----KAVDLGIIDEGTTSIAKVEDFSPDFVMLSS  102 (314)
T ss_dssp             SCSEEEEES-CSHHHHHHHHHHHHT-TCCSEEEEECSCHHHHH----HHHHTTSCSEEESCTTGGGGGCCSEEEECS
T ss_pred             CCCEEEEEe-eCHHHHHHHHHHHhC-CCCCEEEEEECCHHHHH----HHHHCCCcchhcCCHHHHhhccCCEEEEeC
Confidence            347999999 899999999999999 77  8999988543222    111111111122233221456799999886

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.30  E-value=0.0096  Score=45.00  Aligned_cols=34  Identities=24%  Similarity=0.428  Sum_probs=27.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEE-EcCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNY   66 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~-~~r~   66 (190)
                      +|+||.|+|+ |.+|+.+++.+.++++ ++.. ++|.
T Consensus         2 ~MmkI~ViGa-GrMG~~i~~~l~~~~~-eLva~~d~~   36 (243)
T 3qy9_A            2 ASMKILLIGY-GAMNQRVARLAEEKGH-EIVGVIENT   36 (243)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEECSS
T ss_pred             CceEEEEECc-CHHHHHHHHHHHhCCC-EEEEEEecC
Confidence            4689999998 9999999999999855 6655 4543

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.29  E-value=0.022  Score=47.04  Aligned_cols=72  Identities=17%  Similarity=0.187  Sum_probs=54.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +++++|+|.| .|-+|...++.|++. |.+|++++....   ..+..+....++.++..+.....+.+.|.||-+.+
T Consensus        10 l~~~~vlVvG-gG~va~~k~~~L~~~-ga~V~vi~~~~~---~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~   81 (457)
T 1pjq_A           10 LRDRDCLIVG-GGDVAERKARLLLEA-GARLTVNALTFI---PQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATD   81 (457)
T ss_dssp             CBTCEEEEEC-CSHHHHHHHHHHHHT-TBEEEEEESSCC---HHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCS
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHhC-cCEEEEEcCCCC---HHHHHHHhcCCEEEEECCCCccccCCccEEEEcCC
Confidence            4789999999 789999999999999 899999976422   23444444457888887777666778888877543

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=96.28  E-value=0.0061  Score=47.23  Aligned_cols=70  Identities=16%  Similarity=0.073  Sum_probs=47.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +.+++++|.| .|.||+.+++.|... |.+|++.+|+.+... ....    .++..+..+-.++...+.|+||.+..
T Consensus       153 l~g~~v~IiG-~G~iG~~~a~~l~~~-G~~V~~~dr~~~~~~-~~~~----~g~~~~~~~~l~~~l~~aDvVi~~~p  222 (293)
T 3d4o_A          153 IHGANVAVLG-LGRVGMSVARKFAAL-GAKVKVGARESDLLA-RIAE----MGMEPFHISKAAQELRDVDVCINTIP  222 (293)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSHHHHH-HHHH----TTSEEEEGGGHHHHTTTCSEEEECCS
T ss_pred             CCCCEEEEEe-eCHHHHHHHHHHHhC-CCEEEEEECCHHHHH-HHHH----CCCeecChhhHHHHhcCCCEEEECCC
Confidence            4789999999 799999999999988 789999988643211 1111    12333322222233567999998874

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=96.28  E-value=0.0068  Score=47.47  Aligned_cols=72  Identities=21%  Similarity=0.116  Sum_probs=45.4

Q ss_pred             CCC-EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEec-cc-----cccccCCcCEEEE
Q 029640           31 SNM-RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DV-----TEPLLIEVDQIYH  103 (190)
Q Consensus        31 ~~~-~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-D~-----~~~~~~~~d~vi~  103 (190)
                      .+. +|+|+|++|.+|..+++.+... |.+|+++.++++..+ ....+. ..  ..+.. |.     ......++|+||+
T Consensus       148 ~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~-~~~~lG-a~--~~i~~~~~~~~~~~~~~~~~~d~vid  222 (328)
T 1xa0_A          148 PERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHD-YLRVLG-AK--EVLAREDVMAERIRPLDKQRWAAAVD  222 (328)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHH-HHHHTT-CS--EEEECC---------CCSCCEEEEEE
T ss_pred             CCCceEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHH-HHHHcC-Cc--EEEecCCcHHHHHHHhcCCcccEEEE
Confidence            344 8999999999999999998888 788999888654432 233322 11  11111 11     0011136899999


Q ss_pred             ccCC
Q 029640          104 LACP  107 (190)
Q Consensus       104 ~ag~  107 (190)
                      ++|.
T Consensus       223 ~~g~  226 (328)
T 1xa0_A          223 PVGG  226 (328)
T ss_dssp             CSTT
T ss_pred             CCcH
Confidence            9973

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=96.24  E-value=0.016  Score=48.78  Aligned_cols=104  Identities=10%  Similarity=0.148  Sum_probs=65.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEec
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIRH   88 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~   88 (190)
                      ...+|+|.| .|.+|.++++.|+..|-..+.+++...-...+.                      +..+-+...+..+..
T Consensus        31 ~~~~VlvvG-~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~~~  109 (531)
T 1tt5_A           31 ESAHVCLIN-ATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE  109 (531)
T ss_dssp             HHCEEEEEC-CSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEESS
T ss_pred             hcCeEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEeCC
Confidence            568999999 689999999999999446888887543221111                      111111234444444


Q ss_pred             cccc------cccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           89 DVTE------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        89 D~~~------~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ++.+      ..+.++|+||.+..         +.        ..-..+.+.|...++.+|..++.+.+|
T Consensus       110 ~~~~~~~~~~~~~~~~DvVi~~~d---------~~--------~~r~~ln~~c~~~~iplI~~~~~G~~G  162 (531)
T 1tt5_A          110 SPENLLDNDPSFFCRFTVVVATQL---------PE--------STSLRLADVLWNSQIPLLICRTYGLVG  162 (531)
T ss_dssp             CHHHHHHSCGGGGGGCSEEEEESC---------CH--------HHHHHHHHHHHHTTCCEEEEEEETTEE
T ss_pred             CcchhhhhhHHHhcCCCEEEEeCC---------CH--------HHHHHHHHHHHHcCCCEEEEEecCCeE
Confidence            4432      23457899998852         11        122356678888888899887765444

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=96.23  E-value=0.0084  Score=47.42  Aligned_cols=37  Identities=22%  Similarity=0.197  Sum_probs=32.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      .+.+|+|+||+|.+|...++.+... |.+|+++.++++
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~  186 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNE  186 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHH
Confidence            6789999999999999999999888 789999987543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.22  E-value=0.0091  Score=48.65  Aligned_cols=68  Identities=16%  Similarity=0.222  Sum_probs=51.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------CCcCEEEEcc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------~~~d~vi~~a  105 (190)
                      .++|+|+| .|-+|+.+++.|.+. ++.|++++++++    .+..+. ..++..+.+|.++...      .+.|+||.+.
T Consensus         4 ~~~viIiG-~Gr~G~~va~~L~~~-g~~vvvId~d~~----~v~~~~-~~g~~vi~GDat~~~~L~~agi~~A~~viv~~   76 (413)
T 3l9w_A            4 GMRVIIAG-FGRFGQITGRLLLSS-GVKMVVLDHDPD----HIETLR-KFGMKVFYGDATRMDLLESAGAAKAEVLINAI   76 (413)
T ss_dssp             CCSEEEEC-CSHHHHHHHHHHHHT-TCCEEEEECCHH----HHHHHH-HTTCCCEESCTTCHHHHHHTTTTTCSEEEECC
T ss_pred             CCeEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCHH----HHHHHH-hCCCeEEEcCCCCHHHHHhcCCCccCEEEECC
Confidence            46799999 699999999999998 899999988543    333322 2356778899998742      4689888876


Q ss_pred             C
Q 029640          106 C  106 (190)
Q Consensus       106 g  106 (190)
                      +
T Consensus        77 ~   77 (413)
T 3l9w_A           77 D   77 (413)
T ss_dssp             S
T ss_pred             C
Confidence            3

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=96.21  E-value=0.01  Score=48.57  Aligned_cols=37  Identities=16%  Similarity=0.171  Sum_probs=31.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ..+.+|+|+|++|.||...++.+... |.+|+++.++.
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~-Ga~vi~~~~~~  255 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNG-GGIPVAVVSSA  255 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCH
Confidence            46789999999999999999999888 78888887643

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.19  E-value=0.065  Score=42.04  Aligned_cols=73  Identities=14%  Similarity=-0.061  Sum_probs=47.6

Q ss_pred             CCCEEEEEcccchHHHH-HHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-CCcCEEEEccCCC
Q 029640           31 SNMRILVTGGAGFIGSH-LVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-IEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~-l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~d~vi~~ag~~  108 (190)
                      .+++|.+.| -|.+|.. +++.|.++ |++|.+.+++.....  ...+. ..++.+..+.-.+... .++|.||...|+.
T Consensus         3 ~~~~i~~iG-iGg~Gms~~A~~L~~~-G~~V~~~D~~~~~~~--~~~L~-~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~   77 (326)
T 3eag_A            3 AMKHIHIIG-IGGTFMGGLAAIAKEA-GFEVSGCDAKMYPPM--STQLE-ALGIDVYEGFDAAQLDEFKADVYVIGNVAK   77 (326)
T ss_dssp             CCCEEEEES-CCSHHHHHHHHHHHHT-TCEEEEEESSCCTTH--HHHHH-HTTCEEEESCCGGGGGSCCCSEEEECTTCC
T ss_pred             CCcEEEEEE-ECHHHHHHHHHHHHhC-CCEEEEEcCCCCcHH--HHHHH-hCCCEEECCCCHHHcCCCCCCEEEECCCcC
Confidence            458899999 6778885 88988898 999999998654221  12222 2255555432211112 3689999998764

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=96.19  E-value=0.0064  Score=47.68  Aligned_cols=71  Identities=20%  Similarity=0.195  Sum_probs=45.9

Q ss_pred             CCC-EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEec-cc-cc----cccCCcCEEEE
Q 029640           31 SNM-RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DV-TE----PLLIEVDQIYH  103 (190)
Q Consensus        31 ~~~-~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-D~-~~----~~~~~~d~vi~  103 (190)
                      .+. +|+|+|++|.+|...++.+... |.+|+++.++++..+ ....+. ..  ..+.. |. .+    ....++|++|+
T Consensus       149 ~g~~~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~-~~~~lG-a~--~v~~~~~~~~~~~~~~~~~~~d~vid  223 (330)
T 1tt7_A          149 PEKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAAD-YLKQLG-AS--EVISREDVYDGTLKALSKQQWQGAVD  223 (330)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHH-HHHHHT-CS--EEEEHHHHCSSCCCSSCCCCEEEEEE
T ss_pred             CCCceEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HHHHcC-Cc--EEEECCCchHHHHHHhhcCCccEEEE
Confidence            344 8999999999999999999888 788999888654432 233332 11  11211 11 00    11135899999


Q ss_pred             ccC
Q 029640          104 LAC  106 (190)
Q Consensus       104 ~ag  106 (190)
                      ++|
T Consensus       224 ~~g  226 (330)
T 1tt7_A          224 PVG  226 (330)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            987

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.18  E-value=0.016  Score=42.49  Aligned_cols=36  Identities=19%  Similarity=0.219  Sum_probs=30.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      .+++|.|.| .|.+|..++..|.+. +++|.+.+|+.+
T Consensus        18 ~~~~I~iiG-~G~mG~~la~~l~~~-g~~V~~~~~~~~   53 (209)
T 2raf_A           18 QGMEITIFG-KGNMGQAIGHNFEIA-GHEVTYYGSKDQ   53 (209)
T ss_dssp             --CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECTTCC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence            568999999 899999999999998 789999988543

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=96.18  E-value=0.0022  Score=50.74  Aligned_cols=69  Identities=19%  Similarity=0.246  Sum_probs=45.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc--------ccCCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP--------LLIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~--------~~~~~d~v  101 (190)
                      ..+.+|+|+||+|.||..+++.+... |.+|+++ ++.+. .+....+    ..+.+. +-.+.        ...++|+|
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~-~~~~~~l----Ga~~i~-~~~~~~~~~~~~~~~~g~D~v  220 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSD-LEYVRDL----GATPID-ASREPEDYAAEHTAGQGFDLV  220 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHH-HHHHHHH----TSEEEE-TTSCHHHHHHHHHTTSCEEEE
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHH-HHHHHHc----CCCEec-cCCCHHHHHHHHhcCCCceEE
Confidence            35789999999999999999999888 7888888 53332 2222222    122222 11111        01369999


Q ss_pred             EEccC
Q 029640          102 YHLAC  106 (190)
Q Consensus       102 i~~ag  106 (190)
                      |+++|
T Consensus       221 id~~g  225 (343)
T 3gaz_A          221 YDTLG  225 (343)
T ss_dssp             EESSC
T ss_pred             EECCC
Confidence            99987

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.13  E-value=0.014  Score=45.13  Aligned_cols=37  Identities=16%  Similarity=0.317  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      .+.|++++|.|+++.+|+.++..|+.. +..|+++.|+
T Consensus       158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~-gAtVtv~hs~  194 (285)
T 3l07_A          158 KTEGAYAVVVGASNVVGKPVSQLLLNA-KATVTTCHRF  194 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTT
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHC-CCeEEEEeCC
Confidence            358999999999999999999999999 8889888664

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=96.10  E-value=0.027  Score=43.76  Aligned_cols=69  Identities=14%  Similarity=0.107  Sum_probs=45.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      ..+.+|+|+|+ |.+|...++.+... |.+|+++. +++ ..+....+    +.+.+.-| .+....++|+||.+.|.
T Consensus       141 ~~g~~VlV~Ga-G~vG~~a~qlak~~-Ga~Vi~~~-~~~-~~~~~~~l----Ga~~v~~d-~~~v~~g~Dvv~d~~g~  209 (315)
T 3goh_A          141 TKQREVLIVGF-GAVNNLLTQMLNNA-GYVVDLVS-ASL-SQALAAKR----GVRHLYRE-PSQVTQKYFAIFDAVNS  209 (315)
T ss_dssp             CSCCEEEEECC-SHHHHHHHHHHHHH-TCEEEEEC-SSC-CHHHHHHH----TEEEEESS-GGGCCSCEEEEECC---
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHc-CCEEEEEE-Chh-hHHHHHHc----CCCEEEcC-HHHhCCCccEEEECCCc
Confidence            36789999999 99999999999888 77999988 443 33334333    22222224 22223469999999873

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.03  E-value=0.025  Score=44.63  Aligned_cols=71  Identities=18%  Similarity=0.062  Sum_probs=47.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      ..+.+|+|+|+ |.+|...++.+... |.+|+++.++++... ....+. ..  ..+ .|.. ....++|+||.++|..
T Consensus       175 ~~g~~VlV~Ga-G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~-~~~~lG-a~--~v~-~~~~-~~~~~~D~vid~~g~~  245 (348)
T 3two_A          175 TKGTKVGVAGF-GGLGSMAVKYAVAM-GAEVSVFARNEHKKQ-DALSMG-VK--HFY-TDPK-QCKEELDFIISTIPTH  245 (348)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHT-TCEEEEECSSSTTHH-HHHHTT-CS--EEE-SSGG-GCCSCEEEEEECCCSC
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHC-CCeEEEEeCCHHHHH-HHHhcC-CC--eec-CCHH-HHhcCCCEEEECCCcH
Confidence            36899999996 99999999999888 789999888665443 233321 11  222 2221 1112799999998743

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.02  E-value=0.014  Score=45.05  Aligned_cols=38  Identities=18%  Similarity=0.266  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      .+.|++++|.|+++.+|+.++..|+.. +..|+++.++.
T Consensus       158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~-gAtVtv~hs~T  195 (286)
T 4a5o_A          158 DLYGMDAVVVGASNIVGRPMALELLLG-GCTVTVTHRFT  195 (286)
T ss_dssp             CCTTCEEEEECTTSTTHHHHHHHHHHT-TCEEEEECTTC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHC-CCeEEEEeCCC
Confidence            358999999999999999999999999 88999887643

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*

Probab=96.00  E-value=0.016  Score=40.64  Aligned_cols=65  Identities=12%  Similarity=0.053  Sum_probs=43.5

Q ss_pred             cchHHHHHHHHHHhcCCCeEEEEcCCCCCChh---hhhhhh-cCCceEEEecccccc--c------------cCCcCEEE
Q 029640           41 AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLRKWI-GHPRFELIRHDVTEP--L------------LIEVDQIY  102 (190)
Q Consensus        41 ~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~---~~~~~~-~~~~~~~~~~D~~~~--~------------~~~~d~vi  102 (190)
                      +|.++...++.|.+. |.+|++..|.......   ....+. ...++..+.+|+.++  +            +.+ |++|
T Consensus        25 s~~p~~a~a~~La~~-Ga~vvi~~r~~~e~~~~~~~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-dVLV  102 (157)
T 3gxh_A           25 SGLPNEQQFSLLKQA-GVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-DVLV  102 (157)
T ss_dssp             EBCCCHHHHHHHHHT-TCCEEEECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-CEEE
T ss_pred             cCCCCHHHHHHHHHc-CCCEEEECCCcccccccccHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-CEEE
Confidence            457889999999998 8888887775543321   111111 123566777899887  2            124 9999


Q ss_pred             EccCC
Q 029640          103 HLACP  107 (190)
Q Consensus       103 ~~ag~  107 (190)
                      ||||.
T Consensus       103 nnAgg  107 (157)
T 3gxh_A          103 HCLAN  107 (157)
T ss_dssp             ECSBS
T ss_pred             ECCCC
Confidence            99984

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.97  E-value=0.012  Score=45.16  Aligned_cols=37  Identities=14%  Similarity=0.153  Sum_probs=33.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      +.|++++|.|+++.+|+.++..|+.. +..|+++.++.
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~-gAtVtv~~~~t  184 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNR-NYTVSVCHSKT  184 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTC
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHC-CCeEEEEeCCc
Confidence            68999999999999999999999999 88999987653

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=95.95  E-value=0.027  Score=44.63  Aligned_cols=37  Identities=27%  Similarity=0.386  Sum_probs=31.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      +.+.+|+|.| .|.+|.++++.|+..|-.++.++++..
T Consensus        32 L~~~~VlIvG-aGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           32 IKNTKVLLLG-AGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HHTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HhCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            3678999999 899999999999999546888887653

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.93  E-value=0.0057  Score=48.64  Aligned_cols=72  Identities=15%  Similarity=0.103  Sum_probs=45.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEec-cc--cccccCCcCEEEEccCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DV--TEPLLIEVDQIYHLACP  107 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-D~--~~~~~~~~d~vi~~ag~  107 (190)
                      .+.+|+|+| +|.+|...++.+... |.+|+++.++++........+. ..  ..+.. |.  ......++|+||.++|.
T Consensus       180 ~g~~VlV~G-aG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~lG-a~--~vi~~~~~~~~~~~~~g~D~vid~~g~  254 (357)
T 2cf5_A          180 PGLRGGILG-LGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQDLG-AD--DYVIGSDQAKMSELADSLDYVIDTVPV  254 (357)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTTSC-CS--CEEETTCHHHHHHSTTTEEEEEECCCS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHcC-Cc--eeeccccHHHHHHhcCCCCEEEECCCC
Confidence            678999999 499999999998888 7789998876443222111221 11  11111 10  00112368999999974

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=95.92  E-value=0.019  Score=44.98  Aligned_cols=35  Identities=17%  Similarity=0.138  Sum_probs=31.8

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYF   67 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~   67 (190)
                      ++|+|.|+| .|.+|..+++.|++. | ++|.+.+|+.
T Consensus        23 M~m~IgvIG-~G~mG~~lA~~L~~~-G~~~V~~~dr~~   58 (317)
T 4ezb_A           23 MMTTIAFIG-FGEAAQSIAGGLGGR-NAARLAAYDLRF   58 (317)
T ss_dssp             SCCEEEEEC-CSHHHHHHHHHHHTT-TCSEEEEECGGG
T ss_pred             cCCeEEEEC-ccHHHHHHHHHHHHc-CCCeEEEEeCCC
Confidence            457899999 899999999999999 8 9999999875

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.91  E-value=0.024  Score=44.62  Aligned_cols=69  Identities=14%  Similarity=-0.025  Sum_probs=45.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------CCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d~v  101 (190)
                      ..+++|+|+|+ |.+|..+++.+... |.+|+++.++++... ....+ ..  ...  .|..+...        .++|+|
T Consensus       163 ~~g~~VlV~Ga-G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~-~~~~l-Ga--~~~--~d~~~~~~~~~~~~~~~~~d~v  234 (339)
T 1rjw_A          163 KPGEWVAIYGI-GGLGHVAVQYAKAM-GLNVVAVDIGDEKLE-LAKEL-GA--DLV--VNPLKEDAAKFMKEKVGGVHAA  234 (339)
T ss_dssp             CTTCEEEEECC-STTHHHHHHHHHHT-TCEEEEECSCHHHHH-HHHHT-TC--SEE--ECTTTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHc-CCEEEEEeCCHHHHH-HHHHC-CC--CEE--ecCCCccHHHHHHHHhCCCCEE
Confidence            36789999999 77999999999888 789999987543322 12221 11  112  23332211        369999


Q ss_pred             EEccC
Q 029640          102 YHLAC  106 (190)
Q Consensus       102 i~~ag  106 (190)
                      |+++|
T Consensus       235 id~~g  239 (339)
T 1rjw_A          235 VVTAV  239 (339)
T ss_dssp             EESSC
T ss_pred             EECCC
Confidence            99997

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.91  E-value=0.02  Score=45.15  Aligned_cols=36  Identities=19%  Similarity=0.104  Sum_probs=30.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      +.|+|.|.| .|.+|..++..|.+. |++|.+++|+.+
T Consensus         3 ~~mki~iiG-~G~~G~~~a~~L~~~-g~~V~~~~r~~~   38 (359)
T 1bg6_A            3 ESKTYAVLG-LGNGGHAFAAYLALK-GQSVLAWDIDAQ   38 (359)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             CcCeEEEEC-CCHHHHHHHHHHHhC-CCEEEEEeCCHH
Confidence            457999999 699999999999998 789999988543

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.91  E-value=0.032  Score=42.53  Aligned_cols=64  Identities=22%  Similarity=0.284  Sum_probs=42.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceE-EEeccccccccCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFE-LIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |+|.|+| .|.+|..+++.|.+. +++|.+.+|+.+.... +..   . ++. ....|+.+ . .++|+||.+.
T Consensus         1 m~i~iiG-~G~~G~~~a~~l~~~-g~~V~~~~~~~~~~~~-~~~---~-g~~~~~~~~~~~-~-~~~D~vi~av   65 (279)
T 2f1k_A            1 MKIGVVG-LGLIGASLAGDLRRR-GHYLIGVSRQQSTCEK-AVE---R-QLVDEAGQDLSL-L-QTAKIIFLCT   65 (279)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHH-HHH---T-TSCSEEESCGGG-G-TTCSEEEECS
T ss_pred             CEEEEEc-CcHHHHHHHHHHHHC-CCEEEEEECCHHHHHH-HHh---C-CCCccccCCHHH-h-CCCCEEEEEC
Confidence            5799999 899999999999998 7899998875432221 111   1 111 11223332 2 6789998886

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.89  E-value=0.0059  Score=46.45  Aligned_cols=67  Identities=12%  Similarity=0.216  Sum_probs=44.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      .+ +++|+| +|..|++++..|++. |. +|++..|+.+.    ...+..  .+.....+-......+.|+||++..
T Consensus       108 ~~-~vliiG-aGg~a~ai~~~L~~~-G~~~I~v~nR~~~k----a~~la~--~~~~~~~~~~~~~~~~aDiVInatp  175 (253)
T 3u62_A          108 KE-PVVVVG-AGGAARAVIYALLQM-GVKDIWVVNRTIER----AKALDF--PVKIFSLDQLDEVVKKAKSLFNTTS  175 (253)
T ss_dssp             CS-SEEEEC-CSHHHHHHHHHHHHT-TCCCEEEEESCHHH----HHTCCS--SCEEEEGGGHHHHHHTCSEEEECSS
T ss_pred             CC-eEEEEC-cHHHHHHHHHHHHHc-CCCEEEEEeCCHHH----HHHHHH--HcccCCHHHHHhhhcCCCEEEECCC
Confidence            56 899999 599999999999998 65 89999985432    222221  2222222211223457999999874

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=95.89  E-value=0.064  Score=42.41  Aligned_cols=32  Identities=19%  Similarity=0.405  Sum_probs=26.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~   64 (190)
                      +.+|.|.|. |.||+.+++.|.++.+.++..+.
T Consensus         3 ~ikVgI~G~-G~iGr~~~R~l~~~~~vevvaI~   34 (335)
T 1u8f_O            3 KVKVGVNGF-GRIGRLVTRAAFNSGKVDIVAIN   34 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             ceEEEEEcc-CHHHHHHHHHHHcCCCcEEEEec
Confidence            469999995 99999999999988556766654

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=95.88  E-value=0.013  Score=45.62  Aligned_cols=37  Identities=22%  Similarity=0.341  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      .+.|++++|.|+++.+|+.++..|+.. +..|+++.|+
T Consensus       162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~-gAtVtv~~~~  198 (300)
T 4a26_A          162 EMAGKRAVVLGRSNIVGAPVAALLMKE-NATVTIVHSG  198 (300)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCC
Confidence            358999999999999999999999999 8899998774

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=95.86  E-value=0.042  Score=42.58  Aligned_cols=68  Identities=10%  Similarity=0.040  Sum_probs=43.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +.|+|.|+| .|.+|..+++.|++. |++|.+.+|+++..    ..+... +......|+. +...++|+||-+..
T Consensus         6 ~~~~I~iIG-~G~mG~~~a~~l~~~-G~~V~~~dr~~~~~----~~~~~~-g~~~~~~~~~-e~~~~aDvvi~~vp   73 (303)
T 3g0o_A            6 TDFHVGIVG-LGSMGMGAARSCLRA-GLSTWGADLNPQAC----ANLLAE-GACGAAASAR-EFAGVVDALVILVV   73 (303)
T ss_dssp             -CCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHH----HHHHHT-TCSEEESSST-TTTTTCSEEEECCS
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHC-CCeEEEEECCHHHH----HHHHHc-CCccccCCHH-HHHhcCCEEEEECC
Confidence            457899998 899999999999998 89999998854332    222211 1111112222 23356788887763

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=95.85  E-value=0.023  Score=44.76  Aligned_cols=65  Identities=22%  Similarity=0.205  Sum_probs=45.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.++++.|.| .|.||+.+++.|... |.+|.+.+|+.......        . .....+-.++.+.++|+|+.+.
T Consensus       135 l~gktvGIiG-lG~IG~~vA~~l~~~-G~~V~~~dr~~~~~~~~--------~-~~~~~~~l~ell~~aDvV~l~l  199 (324)
T 3evt_A          135 LTGQQLLIYG-TGQIGQSLAAKASAL-GMHVIGVNTTGHPADHF--------H-ETVAFTATADALATANFIVNAL  199 (324)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSCCCCTTC--------S-EEEEGGGCHHHHHHCSEEEECC
T ss_pred             ccCCeEEEEC-cCHHHHHHHHHHHhC-CCEEEEECCCcchhHhH--------h-hccccCCHHHHHhhCCEEEEcC
Confidence            4789999999 999999999999988 89999998875543211        0 1122222223345678877665

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.79  E-value=0.084  Score=43.13  Aligned_cols=34  Identities=38%  Similarity=0.472  Sum_probs=30.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      |+|.|.| .|++|..++..|++. |++|++++|+++
T Consensus         1 mkI~VIG-~G~vG~~~A~~la~~-G~~V~~~d~~~~   34 (436)
T 1mv8_A            1 MRISIFG-LGYVGAVCAGCLSAR-GHEVIGVDVSST   34 (436)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECCHH
Confidence            5799999 899999999999998 899999988543

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=95.71  E-value=0.028  Score=44.24  Aligned_cols=37  Identities=22%  Similarity=0.236  Sum_probs=33.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      +.++++.|.| .|-||+.+++.|... |.+|.+.+|+..
T Consensus       138 l~g~tvGIIG-lG~IG~~vA~~l~~~-G~~V~~~dr~~~  174 (324)
T 3hg7_A          138 LKGRTLLILG-TGSIGQHIAHTGKHF-GMKVLGVSRSGR  174 (324)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCC
T ss_pred             cccceEEEEE-ECHHHHHHHHHHHhC-CCEEEEEcCChH
Confidence            4789999999 999999999999988 899999988754

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=95.70  E-value=0.021  Score=47.43  Aligned_cols=37  Identities=22%  Similarity=0.190  Sum_probs=32.1

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      .+.+++++|+|+ |.||+.+++.|... |.+|++.++++
T Consensus       262 ~L~GKtVvVtGa-GgIG~aiA~~Laa~-GA~Viv~D~~~  298 (488)
T 3ond_A          262 MIAGKVAVVAGY-GDVGKGCAAALKQA-GARVIVTEIDP  298 (488)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             cccCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence            357899999995 59999999999999 88999988754

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=95.70  E-value=0.029  Score=44.95  Aligned_cols=35  Identities=23%  Similarity=0.353  Sum_probs=31.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      +.+++|+|.| .|-+|+.+++.|.+. |.+|++.+++
T Consensus       171 L~GktV~V~G-~G~VG~~~A~~L~~~-GakVvv~D~~  205 (364)
T 1leh_A          171 LEGLAVSVQG-LGNVAKALCKKLNTE-GAKLVVTDVN  205 (364)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSC
T ss_pred             CCcCEEEEEC-chHHHHHHHHHHHHC-CCEEEEEcCC
Confidence            5789999999 699999999999999 8888888764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.69  E-value=0.025  Score=45.05  Aligned_cols=38  Identities=29%  Similarity=0.312  Sum_probs=31.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      .+.+|+|+||+|.+|...++.+...++.+|+++.++++
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~  208 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPE  208 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            56789999999999999998877644789999987543

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.68  E-value=0.052  Score=44.68  Aligned_cols=34  Identities=24%  Similarity=0.317  Sum_probs=30.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      |+|.|+| .|++|..++..|++. |++|++++|+++
T Consensus         3 mkI~VIG-~G~vG~~lA~~La~~-G~~V~~~D~~~~   36 (450)
T 3gg2_A            3 LDIAVVG-IGYVGLVSATCFAEL-GANVRCIDTDRN   36 (450)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhc-CCEEEEEECCHH
Confidence            7899999 799999999999999 899999988643

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=95.65  E-value=0.034  Score=45.71  Aligned_cols=37  Identities=19%  Similarity=0.190  Sum_probs=31.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ..+.+|+|+|++|.||...++.+... |.+|+++.+++
T Consensus       227 ~~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~  263 (456)
T 3krt_A          227 KQGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSP  263 (456)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCH
Confidence            46789999999999999999999888 78888887643

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=95.64  E-value=0.025  Score=45.49  Aligned_cols=38  Identities=21%  Similarity=0.227  Sum_probs=32.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      +.+++|+|+| .|-+|..+++.+... |.+|++.+++...
T Consensus       170 l~g~~V~ViG-aG~iG~~aa~~a~~~-Ga~V~~~d~~~~~  207 (384)
T 1l7d_A          170 VPPARVLVFG-VGVAGLQAIATAKRL-GAVVMATDVRAAT  207 (384)
T ss_dssp             ECCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCSTT
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCHHH
Confidence            3689999999 699999999999998 7789999887554

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.62  E-value=0.02  Score=45.25  Aligned_cols=35  Identities=26%  Similarity=0.262  Sum_probs=30.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYF   67 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~   67 (190)
                      .+.+|+|+|+ |.+|..+++.+... |. +|+++.+++
T Consensus       167 ~g~~VlV~Ga-G~vG~~~~q~a~~~-Ga~~Vi~~~~~~  202 (348)
T 2d8a_A          167 SGKSVLITGA-GPLGLLGIAVAKAS-GAYPVIVSEPSD  202 (348)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHT-TCCSEEEECSCH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHc-CCCEEEEECCCH
Confidence            6789999999 99999999999888 77 899988753

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=95.60  E-value=0.017  Score=43.93  Aligned_cols=68  Identities=19%  Similarity=0.109  Sum_probs=45.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +.+ +++|.| .|.+|+.+++.|.+. +.+|.+..|+.+........+ +   ..+  .|+. +. .++|+||++....
T Consensus       115 l~~-~v~iiG-~G~~g~~~a~~l~~~-g~~v~v~~r~~~~~~~l~~~~-~---~~~--~~~~-~~-~~~Divi~~tp~~  182 (263)
T 2d5c_A          115 LKG-PALVLG-AGGAGRAVAFALREA-GLEVWVWNRTPQRALALAEEF-G---LRA--VPLE-KA-REARLLVNATRVG  182 (263)
T ss_dssp             CCS-CEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSHHHHHHHHHHH-T---CEE--CCGG-GG-GGCSEEEECSSTT
T ss_pred             CCC-eEEEEC-CcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh-c---cch--hhHh-hc-cCCCEEEEccCCC
Confidence            367 899999 588999999999998 668988888643322222111 1   121  2333 23 6799999998644

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.59  E-value=0.01  Score=47.51  Aligned_cols=72  Identities=14%  Similarity=0.096  Sum_probs=45.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEec---cccccccCCcCEEEEccC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH---DVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~---D~~~~~~~~~d~vi~~ag  106 (190)
                      ..+.+|+|+|+ |.+|...++.+... |.+|+++.++++... ....+. ..  ..+..   |.......++|+||.++|
T Consensus       193 ~~g~~VlV~Ga-G~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~-~a~~lG-a~--~vi~~~~~~~~~~~~~g~Dvvid~~g  266 (369)
T 1uuf_A          193 GPGKKVGVVGI-GGLGHMGIKLAHAM-GAHVVAFTTSEAKRE-AAKALG-AD--EVVNSRNADEMAAHLKSFDFILNTVA  266 (369)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESSGGGHH-HHHHHT-CS--EEEETTCHHHHHTTTTCEEEEEECCS
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HHHHcC-Cc--EEeccccHHHHHHhhcCCCEEEECCC
Confidence            36789999997 88999999988888 788998887654332 222221 11  22211   111111146999999997


Q ss_pred             C
Q 029640          107 P  107 (190)
Q Consensus       107 ~  107 (190)
                      .
T Consensus       267 ~  267 (369)
T 1uuf_A          267 A  267 (369)
T ss_dssp             S
T ss_pred             C
Confidence            4

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d2b69a1	312	c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1	7e-55
d1kewa_	361	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	2e-35
d1db3a_	357	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric	5e-33
d1udca_	338	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	5e-30
d1r6da_	322	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	4e-29
d1orra_	338	c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella	5e-28
d1e6ua_	315	c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras	1e-26
d1oc2a_	346	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	7e-25
d1sb8a_	341	c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W	9e-25
d1t2aa_	347	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H	4e-24
d1z45a2	347	c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep	1e-22
d1rpna_	321	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo	1e-19
d2c5aa1	363	c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T	3e-18
d2blla1	342	c.2.1.2 (A:316-657) Polymyxin resistance protein A	7e-18
d1ek6a_	346	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	1e-16
d1gy8a_	383	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	1e-14
d1n7ha_	339	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr	2e-14
d1rkxa_	356	c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia	3e-14
d1eq2a_	307	c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer	3e-14
d1i24a_	393	c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1	1e-12
d1hdoa_	205	c.2.1.2 (A:) Biliverdin IX beta reductase {Human (	1e-11
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	4e-11
d1qyda_	312	c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {	4e-11
d1n2sa_	298	c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct	6e-11
d2q46a1	252	c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (	8e-11
d1qyca_	307	c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta	1e-10
d1vl0a_	281	c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD	3e-09
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	3e-08
d2bkaa1	232	c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H	4e-07
d2a35a1	212	c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse	8e-06
d1luaa1	191	c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter	9e-05

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  174 bits (442), Expect = 7e-55
 Identities = 107/155 (69%), Positives = 119/155 (76%), Gaps = 4/155 (2%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 3   RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 61

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 62  LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 121

Query: 154 PLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
           P VHPQ E YWG+VNPIG  +        K + E 
Sbjct: 122 PEVHPQSEDYWGHVNPIGPRACY---DEGKRVAET 153

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score =  125 bits (315), Expect = 2e-35
 Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 26/179 (14%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVT 91
           M+IL+TGGAGFIGS +V  +++N ++ V+ +D   + G+ ++L       R+     D+ 
Sbjct: 1   MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60

Query: 92  EPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---- 140
           +   I         D + HLA  +        P   I+TN++GT  +L +A++  +    
Sbjct: 61  DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120

Query: 141 ------RILLTSTSEVYGDPLVHPQDES-----YWGNVNPIGMFSFVLKDGIMKLIGEL 188
                 R    ST EVYGD     + E+      +         S        K   + 
Sbjct: 121 DKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPY---SASKASSDH 176

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

 Score =  118 bits (297), Expect = 5e-33
 Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 26/172 (15%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDN----YFTGSKDNLRK--WIGHPRFELIR 87
             L+TG  G  GS+L + L+E    EV  +      + T   D++ +     +P+F L  
Sbjct: 3   VALITGVTGQDGSYLAEFLLEK-GYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61

Query: 88  HDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG- 139
            D+++   +         D++Y+L   +       +P  T   + +GTL +L   + +G 
Sbjct: 62  GDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGL 121

Query: 140 ---ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
               R    STSE+YG     PQ E+      P   +       + KL    
Sbjct: 122 EKKTRFYQASTSELYGLVQEIPQKETT--PFYPRSPY------AVAKLYAYW 165

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

 Score =  110 bits (275), Expect = 5e-30
 Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 11/142 (7%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRHDV 90
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L   + +G      +  D+
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDI 59

Query: 91  TEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RI 142
               L+        +D + H A   +       P++    NV GTL ++   +       
Sbjct: 60  RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119

Query: 143 LLTSTSEVYGDPLVHPQDESYW 164
           + +S++ VYGD    P  ES+ 
Sbjct: 120 IFSSSATVYGDQPKIPYVESFP 141

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

 Score =  107 bits (269), Expect = 4e-29
 Identities = 52/168 (30%), Positives = 75/168 (44%), Gaps = 20/168 (11%)

Query: 33  MRILVTGGAGFIGSHLVDKLMEN-----EKNEVIVVDNY-FTGSKDNLRKWIGHPRFELI 86
           MR+LVTGGAGFIGSH V +L+         +EVIV+D+  + G++ NL      PR   +
Sbjct: 1   MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60

Query: 87  RHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A 140
             D+ +  L+      VD I H A  +             +TNV GT  +L  A   G  
Sbjct: 61  HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120

Query: 141 RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
           R++  ST++VYG        ES    + P   +         K   +L
Sbjct: 121 RVVHVSTNQVYGSIDSGSWTESSP--LEPNSPY------AASKAGSDL 160

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

 Score =  105 bits (261), Expect = 5e-28
 Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 11/146 (7%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTE 92
           ++L+TGG GF+GS+L    +     ++IV DN    G+ DNL        FE +  D+  
Sbjct: 2   KLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 60

Query: 93  PLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA--KRVGARIL 143
              +         D  +HLA   +      NP    + NV GTLN+L           I+
Sbjct: 61  KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 120

Query: 144 LTSTSEVYGDPLVHPQDESYWGNVNP 169
            +ST++VYGD   +  +E+       
Sbjct: 121 YSSTNKVYGDLEQYKYNETETRYTCV 146

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (250), Expect = 1e-26
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 18/160 (11%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           +  R+ + G  G +GS +  +L +   +  +V+       +D L         +    + 
Sbjct: 1   AKQRVFIAGHRGMVGSAIRRQLEQ-RGDVELVLRT-----RDELNLLDSRAVHDFFASE- 53

Query: 91  TEPLLIEVDQIYHLACPASP-IFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTS 148
                  +DQ+Y  A      +     P   I  N++   N++  A +    ++L   +S
Sbjct: 54  ------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSS 107

Query: 149 EVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
            +Y      P  ES                  I K+ G  
Sbjct: 108 CIYPKLAKQPMAESELLQGTLEPTNEPY---AIAKIAGIK 144

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 97.0 bits (240), Expect = 7e-25
 Identities = 48/166 (28%), Positives = 66/166 (39%), Gaps = 10/166 (6%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
             I+VTGGAGFIGS+ V  +  N  +  V V+D           + I   R EL+  D+ 
Sbjct: 3   KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIA 62

Query: 92  EPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
           +  L++      D I H A  +       +P   I TN IGT  +L  A++   R    S
Sbjct: 63  DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVS 122

Query: 147 TSEVYGD-PLVHPQDESYWGNVNPIGMFSFVLKD---GIMKLIGEL 188
           T EVYGD PL         G        +           K   +L
Sbjct: 123 TDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDL 168

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 96.6 bits (239), Expect = 9e-25
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 14/161 (8%)

Query: 26  SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW------IG 79
            +        L+TG AGFIGS+L++ L++    +V+ +DN+ TG + NL +         
Sbjct: 10  KELPAQPKVWLITGVAGFIGSNLLETLLK-LDQKVVGLDNFATGHQRNLDEVRSLVSEKQ 68

Query: 80  HPRFELIRHDVTEPLLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
              F+ I+ D+            VD + H A   S      +P+ +  TN+ G LNML  
Sbjct: 69  WSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIA 128

Query: 135 AKRVGARILL-TSTSEVYGDPLVHPQDESYWGN-VNPIGMF 173
           A+    +     ++S  YGD    P+ E   G  ++P  + 
Sbjct: 129 ARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVT 169

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.0 bits (235), Expect = 4e-24
 Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 27/172 (15%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDN----YFTGSKDNLRKWIG---HPRFELIR 87
            L+TG  G  GS+L + L+E    EV  +      + TG  ++L K          +L  
Sbjct: 4   ALITGITGQDGSYLAEFLLEK-GYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHY 62

Query: 88  HDVTEPLL-------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG- 139
            D+T+          ++  +IY+L   +           T   + +GTL +L   K  G 
Sbjct: 63  GDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGL 122

Query: 140 ---ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
               +    STSE+YG     PQ E+      P   +      G  KL    
Sbjct: 123 INSVKFYQASTSELYGKVQEIPQKETTP--FYPRSPY------GAAKLYAYW 166

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.9 bits (224), Expect = 1e-22
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRHDVTE 92
           +LVTGGAG+IGSH V +L+EN   + +V DN    + D++   + +          D+ +
Sbjct: 4   VLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD 62

Query: 93  PLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL- 144
              +E       +D + H A   +       P++    N++GT+ +L L ++      + 
Sbjct: 63  RKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVF 122

Query: 145 TSTSEVYGDPLVHPQDESYW 164
           +S++ VYGD    P      
Sbjct: 123 SSSATVYGDATRFPNMIPIP 142

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 82.4 bits (202), Expect = 1e-19
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 11/160 (6%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTE 92
             LVTG  G  G++L   L+E     V  +     + ++  LR+       +    D+ +
Sbjct: 2   SALVTGITGQDGAYLAKLLLEK-GYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMAD 60

Query: 93  PLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARIL 143
              +       +  ++Y+LA  +        PV T   + +G  ++L   ++     R  
Sbjct: 61  ACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFY 120

Query: 144 LTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMK 183
             STSE++G      QDE+           + +    I  
Sbjct: 121 QASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITV 160

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 78.8 bits (193), Expect = 3e-18
 Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 15/178 (8%)

Query: 19  TPSPLRFSKFFQS-NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW 77
           T   L   +++ S N++I +TG  GFI SH+  +L   E + VI  D       +++ + 
Sbjct: 1   TYKELEREQYWPSENLKISITGAGGFIASHIARRLKH-EGHYVIASDW---KKNEHMTED 56

Query: 78  IGHPRFELIRHDVTEPLLIEVDQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLG 133
           +    F L+   V E  L   + + H+   A+      F + N    +  N + + NM+ 
Sbjct: 57  MFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIE 116

Query: 134 LAKRVG-ARILLTSTSEVYG--DPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
            A+  G  R    S++ +Y     L          +  P          G+ KL  E 
Sbjct: 117 AARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAF---GLEKLATEE 171

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

 Score = 77.7 bits (189), Expect = 7e-18
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
           MR+L+ G  GFIG+HL ++L+  +  EV  +D       D + +++ HP F  +  D++ 
Sbjct: 1   MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEGDISI 56

Query: 92  -----EPLLIEVDQIYHLACPASPIFYKYNP 117
                E  + + D +  L   A+PI Y  NP
Sbjct: 57  HSEWIEYHVKKCDVVLPLVAIATPIEYTRNP 87

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (181), Expect = 1e-16
 Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 16/146 (10%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--------KWIGHPRFEL 85
           ++LVTGGAG+IGSH V +L+E      +V+DN+    +            + +     E 
Sbjct: 4   KVLVTGGAGYIGSHTVLELLEA-GYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62

Query: 86  IRHDVTEPLLIEVDQ-------IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
              D+ +   ++          + H A   +       P+   + N+ GT+ +L + K  
Sbjct: 63  EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122

Query: 139 GARILLTSTSEVYGDPLVHPQDESYW 164
           G + L+ S+S        +   +   
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAH 148

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

 Score = 68.7 bits (166), Expect = 1e-14
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 18/94 (19%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS------------------KD 72
           S+MR+LV GGAG+IGSH V  L+ +  + V++VD+                        D
Sbjct: 1   SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60

Query: 73  NLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 106
             +         L   DV     +      H   
Sbjct: 61  GPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPI 94

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 67.8 bits (164), Expect = 2e-14
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 20/152 (13%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDN----YFTGSKDNLR---KWIGHPRFELI 86
             L+TG  G  GS+L + L+  +  EV  +      + T   +++      +     +L 
Sbjct: 3   IALITGITGQDGSYLTEFLLG-KGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLH 61

Query: 87  RHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
             D+T+   +         D++Y+LA  +        P  T      G L +L   +   
Sbjct: 62  YADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHT 121

Query: 140 AR-----ILLTSTSEVYGDPLVHPQDESYWGN 166
                      + S         PQ E+   +
Sbjct: 122 IDSGRTVKYYQAGSSEMFGSTPPPQSETTPFH 153

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

 Score = 67.6 bits (163), Expect = 3e-14
 Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 2/81 (2%)

Query: 26  SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
           + F+Q   R+ VTG  GF G  L   L       V                       + 
Sbjct: 3   NSFWQ-GKRVFVTGHTGFKGGWLSLWLQTM-GATVKGYSLTAPTVPSLFETARVADGMQS 60

Query: 86  IRHDVTEPLLIEVDQIYHLAC 106
              D+ +   +          
Sbjct: 61  EIGDIRDQNKLLESIREFQPE 81

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

 Score = 67.0 bits (161), Expect = 3e-14
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           I+VTGGAGFIGS++V  L +    +++VVDN   G+K      + +    + + D    +
Sbjct: 2   IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL-NIADYMDKEDFLIQI 60

Query: 95  LIEVDQIYHLACP 107
           +   +     A  
Sbjct: 61  MAGEEFGDVEAIF 73

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 63.1 bits (151), Expect = 1e-12
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 19/83 (22%)

Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR----------------- 75
           R++V GG G+ G      L +    EV +VDN      D+                   
Sbjct: 2  SRVMVIGGDGYCGWATALHLSKK-NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 60

Query: 76 -KWIGHPRFELIRHDVTEPLLIE 97
           K +     EL   D+ +   + 
Sbjct: 61 WKALTGKSIELYVGDICDFEFLA 83

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 1e-11
 Identities = 17/135 (12%), Positives = 43/135 (31%), Gaps = 9/135 (6%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           +  +I + G  G  G   + + ++    EV V+    +       +       ++++   
Sbjct: 2   AVKKIAIFGATGQTGLTTLAQAVQ-AGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAAD 60

Query: 91  TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSE 149
            +  +   D +  L           N +        G  N++   K  G   ++  +++ 
Sbjct: 61  VDKTVAGQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAF 113

Query: 150 VYGDPLVHPQDESYW 164
           +  DP   P      
Sbjct: 114 LLWDPTKVPPRLQAV 128

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 58.7 bits (140), Expect = 4e-11
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 8/137 (5%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP----RFELIRHD 89
            +LVTG  GF+ SH+V++L+E+         +       NL+K             +  D
Sbjct: 13  LVLVTGANGFVASHVVEQLLEHGYKVRGTARS--ASKLANLQKRWDAKYPGRFETAVVED 70

Query: 90  VTEPLLIE--VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
           + +    +  +     +A  AS + +     + +   + GTLN L  A    +      T
Sbjct: 71  MLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLT 130

Query: 148 SEVYGDPLVHPQDESYW 164
           S      +  P  E  +
Sbjct: 131 SSTVSALIPKPNVEGIY 147

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

 Score = 58.2 bits (139), Expect = 4e-11
 Identities = 17/138 (12%), Positives = 42/138 (30%), Gaps = 9/138 (6%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS---KDNLRKWIGHPRFELI 86
               R+L+ GG G+IG  +V+  +    +   V+      S   K  +  +      +LI
Sbjct: 1   DKKSRVLIVGGTGYIGKRIVNASIS-LGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 59

Query: 87  RHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
              + +   +           ++      +     +  +     +  + +    +  L S
Sbjct: 60  EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKL-----VEAIKEAGNIKRFLPS 114

Query: 147 TSEVYGDPLVHPQDESYW 164
              +  D + H       
Sbjct: 115 EFGMDPDIMEHALQPGSI 132

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

 Score = 58.0 bits (138), Expect = 6e-11
 Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 11/132 (8%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M IL+ G  G +G  L   L       +I +D +      +          + +   V +
Sbjct: 1   MNILLFGKTGQVGWELQRSL--APVGNLIALDVHSKEFCGDFSN------PKGVAETVRK 52

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
              +  D I + A   +    +  P      N      +   A   GA ++  ST  V+ 
Sbjct: 53  ---LRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFP 109

Query: 153 DPLVHPQDESYW 164
                P  E+  
Sbjct: 110 GTGDIPWQETDA 121

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 57.1 bits (136), Expect = 8e-11
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 31  SNM-RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRH 88
           +N+  +LVTG +G  G  +  KL E   ++ +      +    + +         ++   
Sbjct: 1   ANLPTVLVTGASGRTGQIVYKKLKEG-SDKFVAKGLVRSAQGKEKIGGEADVFIGDITDA 59

Query: 89  DVTEPLLIEVDQIYHLACPASPIFYKYNPVKTI 121
           D   P    +D +  L      +   ++P K  
Sbjct: 60  DSINPAFQGIDALVILTSAVPKMKPGFDPTKGG 92

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

 Score = 56.7 bits (135), Expect = 1e-10
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR----KWIGHPRFELI 86
          S  RIL+ G  G+IG H+    ++   +   ++    T S ++ +    +        ++
Sbjct: 2  SRSRILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTASSNSEKAQLLESFKASGANIV 60

Query: 87 RHDV 90
             +
Sbjct: 61 HGSI 64

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 52.9 bits (125), Expect = 3e-09
 Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 18/134 (13%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT--GSKDNLRKWIGHPRFELIRHDV 90
           M+IL+TG  G +G  +  +L + +  EVI  D       +   + K+    +        
Sbjct: 2   MKILITGANGQLGREIQKQL-KGKNVEVIPTDVQDLDITNVLAVNKFFNEKKP------- 53

Query: 91  TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 150
                   + + + A   +    +       K N IG  N+   A  VGA I+  ST  V
Sbjct: 54  --------NVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYV 105

Query: 151 YGDPLVHPQDESYW 164
           +      P  E   
Sbjct: 106 FDGEAKEPITEFDE 119

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 50.4 bits (119), Expect = 3e-08
 Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 3/64 (4%)

Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
          Q    I V G  G  G+ L+        +    V +          +    P   L +  
Sbjct: 1  QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS---LKGLIAEELQAIPNVTLFQGP 57

Query: 90 VTEP 93
          +   
Sbjct: 58 LLNN 61

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-07
 Identities = 7/37 (18%), Positives = 16/37 (43%)

Query: 27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV 63
           F   N  + + G +G  G  L+ +++E      + +
Sbjct: 9  DFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTL 45

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.4 bits (98), Expect = 8e-06
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVV 63
          R+L+ G  G  G HL+D+++       ++ 
Sbjct: 4  RVLLAGATGLTGEHLLDRILSEPTLAKVIA 33

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

 Score = 39.1 bits (90), Expect = 9e-05
 Identities = 8/116 (6%), Positives = 23/116 (19%), Gaps = 6/116 (5%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
              + +V  G G +G      L       V+         +          +  +   + 
Sbjct: 22  KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKA-QAAADSVNKRFKVNVTAAET 80

Query: 91  T-----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
                    +     ++        +  +          ++   N        G  
Sbjct: 81  ADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGID 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	99.95
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	99.93
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.92
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.91
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	99.9
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.9
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	99.9
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	99.89
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	99.89
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	99.88
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.87
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	99.87
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.87
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.87
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.85
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.85
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	99.84
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.83
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	99.83
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	99.83
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.81
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.78
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.78
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	99.74
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	99.69
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	99.69
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	99.68
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	99.68
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	99.68
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	99.67
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	99.67
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	99.67
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	99.67
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	99.66
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	99.66
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	99.66
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	99.66
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	99.66
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	99.66
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	99.66
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	99.66
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	99.65
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	99.65
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	99.65
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	99.65
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	99.65
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	99.64
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	99.64
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	99.63
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	99.63
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	99.63
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	99.63
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	99.63
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	99.62
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	99.62
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	99.62
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	99.61
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	99.61
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	99.61
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	99.61
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	99.6
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	99.6
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	99.58
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	99.58
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	99.57
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	99.57
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	99.57
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	99.56
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	99.56
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	99.56
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	99.54
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	99.54
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	99.51
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.51
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	99.5
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	99.5
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	99.46
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	99.45
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	99.44
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	99.44
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	99.43
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	99.41
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	99.41
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	99.41
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	99.4
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	99.32
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.29
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	99.27
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	99.26
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	99.2
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	99.11
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	99.09
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	99.05
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	99.05
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	98.94
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	98.89
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	98.82
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.33
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.24
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.22
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.21
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.15
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	98.15
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.1
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.09
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.07
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.99
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.95
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.9
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.87
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.86
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.85
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.85
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.82
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.82
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.81
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.79
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.78
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.77
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.71
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.71
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.7
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	97.69
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.68
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.68
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.67
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.65
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.63
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.54
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.5
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	97.45
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	97.41
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.39
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.37
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.35
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	97.23
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.22
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.18
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.18
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.15
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	97.14
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.11
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.09
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.04
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.03
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	97.02
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	97.02
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.01
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.99
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.98
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	96.95
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.93
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.92
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.88
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.85
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.79
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.78
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.77
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.75
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.69
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.65
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.62
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.55
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	96.55
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.53
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.52
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.44
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	96.42
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.38
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.36
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.34
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.32
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.25
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.25
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	96.23
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	96.19
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.14
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.13
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.12
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.1
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.07
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.95
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.93
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.92
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.9
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.88
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.86
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.86
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.85
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	95.81
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.81
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.79
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.78
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.69
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.67
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.65
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.57
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.56
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.55
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.53
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	95.5
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	95.49
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.47
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	95.45
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.39
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.38
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.29
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.25
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.24
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	95.2
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.17
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.13
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.06
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.06
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.03
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.95
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	94.9
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.89
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.79
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.79
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.77
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	94.73
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.66
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.62
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.58
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	94.52
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.51
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	94.51
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.44
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	94.43
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	94.35
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.25
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.22
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	94.18
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.15
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	94.07
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.97
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.92
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.91
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.86
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	93.81
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	93.78
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	93.53
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.5
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.45
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.44
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.4
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.18
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.17
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	93.11
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	93.06
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.96
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	92.89
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.85
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	92.72
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	92.6
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	92.26
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	91.99
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	91.97
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	91.82
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	91.54
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.44
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	91.32
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	91.24
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	91.13
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	90.84
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	90.82
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	90.81
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	90.51
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	90.22
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	90.21
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	90.16
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	90.14
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	90.02
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	89.94
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	89.84
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	89.68
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	89.51
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	89.29
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	88.73
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	88.54
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	88.46
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	88.19
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	88.19
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	88.1
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	87.61
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	87.41
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	87.38
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	87.18
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	86.69
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	86.42
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	86.3
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	86.04
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	85.78
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	85.41
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	85.01
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	84.81
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	84.79
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	84.08
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	83.34
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	83.12
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	82.74
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	82.66
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	82.6
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	82.13
d1m3sa_	186	Hypothetical protein YckF {Bacillus subtilis [TaxI	81.84
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	81.28
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	81.08
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	80.05

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-27  Score=186.65  Aligned_cols=152  Identities=70%  Similarity=1.116  Sum_probs=132.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCCcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF  112 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~~~  112 (190)
                      |||+||||+||||+++++.|+++ |++|++++|........+........+++...|+.+....++|+|||+|+...+..
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlAa~~~~~~   80 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMD-GHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPN   80 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCCSHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECcccCCchh
Confidence            78999999999999999999998 89999998766555555555555668899999999888889999999999776655


Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhhhh
Q 029640          113 YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       113 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      +..++.+.+++|+.++.+++++|++.++|+||+||.++|+.....+++|+.+...+|..|.+.|   +.||..+|+
T Consensus        81 ~~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y---~~sK~~~E~  153 (312)
T d2b69a1          81 YMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACY---DEGKRVAET  153 (312)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHH---HHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEChheecCCCCCCCCccccCCCCCCCCccHH---HHHHHHHHH
Confidence            6678888999999999999999999999999999999999888888899877666777777778   888999986

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1.7e-25  Score=178.51  Aligned_cols=147  Identities=27%  Similarity=0.324  Sum_probs=116.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhhhh-----hcCCceEEEeccccccccC-------CcC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKW-----IGHPRFELIRHDVTEPLLI-------EVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~-----~~~~~~~~~~~D~~~~~~~-------~~d   99 (190)
                      |+||||||+||||++|++.|++. |++|++++|...... ..+..+     ....++.++++|++|....       ++|
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEK-GYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-cCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            78999999999999999999999 899999998643211 111111     1235899999999987542       579


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC----eEEEEecceecCCCCCCCCCCCCccCCCCCCcccc
Q 029640          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSF  175 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~  175 (190)
                      +|||+|+......+..++...+++|+.++.+|+++|++.++    |+||+||..+||.+...+++|+     ++..|.+.
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~-----~~~~P~~~  155 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSP  155 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTT-----SCCCCCSH
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCC-----CCCCCCCh
Confidence            99999998777667788889999999999999999998753    6999999999998777789998     45666677


Q ss_pred             hhhhhHHHHhhhh
Q 029640          176 VLKDGIMKLIGEL  188 (190)
Q Consensus       176 y~~~~~sK~~~E~  188 (190)
                      |   +.||+.+|+
T Consensus       156 Y---~~sK~~~E~  165 (357)
T d1db3a_         156 Y---AVAKLYAYW  165 (357)
T ss_dssp             H---HHHHHHHHH
T ss_pred             H---HHHHHHHHH
Confidence            8   888999995

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=5.3e-25  Score=174.18  Aligned_cols=148  Identities=30%  Similarity=0.437  Sum_probs=118.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhh--hhcCCceEEEecccccccc-------CCcCEEEE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK--WIGHPRFELIRHDVTEPLL-------IEVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~-------~~~d~vi~  103 (190)
                      ||||||||+||||++|++.|+++ +++|++++|...........  ......+.++++|++|...       .++|+|||
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH   79 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH   79 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-cCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEE
Confidence            67999999999999999999999 89999998754443332222  2234589999999999753       26999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHH
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIM  182 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~s  182 (190)
                      +|+......+..++.+.+++|+.++.+++++|++.++ ++|++||..+|+.....+..|+.    ....+...|   +.+
T Consensus        80 lAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~----~~~~p~~~Y---~~s  152 (338)
T d1udca_          80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESF----PTGTPQSPY---GKS  152 (338)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTS----CCCCCSSHH---HHH
T ss_pred             CCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEcccccccccccc----ccCCCcchH---HHH
Confidence            9997766666678889999999999999999999997 89999999999876655555553    345566778   888


Q ss_pred             HHhhhh
Q 029640          183 KLIGEL  188 (190)
Q Consensus       183 K~~~E~  188 (190)
                      |+.+|.
T Consensus       153 K~~~e~  158 (338)
T d1udca_         153 KLMVEQ  158 (338)
T ss_dssp             HHHHHH
T ss_pred             HhhhhH
Confidence            999885

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=4.2e-24  Score=169.44  Aligned_cols=147  Identities=28%  Similarity=0.416  Sum_probs=117.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhh--hhcCCceEEEecccccccc-------CCcCEEEE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK--WIGHPRFELIRHDVTEPLL-------IEVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~--~~~~~~~~~~~~D~~~~~~-------~~~d~vi~  103 (190)
                      |.||||||+||||++|++.|+++ |++|+++++...........  .....+++++++|+.|...       .++|+|||
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vih   80 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIH   80 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-cCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEE
Confidence            67999999999999999999999 89999987654433322221  1234578999999998753       26999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCC----CCCCCCCccCCCCCCcccchhh
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV----HPQDESYWGNVNPIGMFSFVLK  178 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~----~~~~e~~~~~~~~~~~~~~y~~  178 (190)
                      +|+...+......+..++.+|+.++.+++++|++.++ ++|++||..+||....    .+++|+     .+..+.+.|  
T Consensus        81 lAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~-----~~~~p~~~Y--  153 (347)
T d1z45a2          81 FAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEE-----CPLGPTNPY--  153 (347)
T ss_dssp             CCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTT-----SCCCCCSHH--
T ss_pred             ccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccc-----cCCCCCChh--
Confidence            9998776666677888999999999999999999997 8999999999996543    345555     566666778  


Q ss_pred             hhHHHHhhhh
Q 029640          179 DGIMKLIGEL  188 (190)
Q Consensus       179 ~~~sK~~~E~  188 (190)
                       +.||..+|+
T Consensus       154 -~~sK~~~E~  162 (347)
T d1z45a2         154 -GHTKYAIEN  162 (347)
T ss_dssp             -HHHHHHHHH
T ss_pred             -HhHHHHHHH
Confidence             888999985

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-23  Score=166.33  Aligned_cols=147  Identities=26%  Similarity=0.271  Sum_probs=116.6

Q ss_pred             CEE-EEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhh------cCCceEEEecccccccc-------CC
Q 029640           33 MRI-LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWI------GHPRFELIRHDVTEPLL-------IE   97 (190)
Q Consensus        33 ~~v-lItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~------~~~~~~~~~~D~~~~~~-------~~   97 (190)
                      |+| |||||+||||++|++.|+++ |++|++++|..... ...+..+.      ....+.++.+|++|...       .+
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   79 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEK-GYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK   79 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHC-cCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhcc
Confidence            567 99999999999999999999 89999998865321 11122211      12478999999998643       35


Q ss_pred             cCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC----eEEEEecceecCCCCCCCCCCCCccCCCCCCcc
Q 029640           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMF  173 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~  173 (190)
                      +++++|+++......+...+...+++|+.++.++++++++++.    ++||+||..+||.+...+++|+     .+..|.
T Consensus        80 ~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~P~  154 (347)
T d1t2aa_          80 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPR  154 (347)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTT-----SCCCCC
T ss_pred             cceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCC-----CCCCCC
Confidence            8899999987665556667778899999999999999998763    7999999999998777788998     566677


Q ss_pred             cchhhhhHHHHhhhh
Q 029640          174 SFVLKDGIMKLIGEL  188 (190)
Q Consensus       174 ~~y~~~~~sK~~~E~  188 (190)
                      +.|   |.||+.+|+
T Consensus       155 ~~Y---g~sK~~aE~  166 (347)
T d1t2aa_         155 SPY---GAAKLYAYW  166 (347)
T ss_dssp             SHH---HHHHHHHHH
T ss_pred             CHH---HHHHHHHHH
Confidence            788   888999996

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.90  E-value=2.3e-23  Score=166.37  Aligned_cols=152  Identities=28%  Similarity=0.384  Sum_probs=115.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCe-EEEEcCCCC-CChhhhhhhhcCCceEEEecccccccc-------CCcCEEEE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNE-VIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~-v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~  103 (190)
                      |+||||||+||||++|++.|++. +++ |.++++... .....+..+....+++++.+|++|...       .++|+|||
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~-g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKN-TQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHH-CSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            68999999999999999999999 665 555554332 223345555556789999999998743       26999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC----------CeEEEEecceecCCCCCCCCCCCCc-----cCCC
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG----------ARILLTSTSEVYGDPLVHPQDESYW-----GNVN  168 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----------~~~i~vSS~~~~~~~~~~~~~e~~~-----~~~~  168 (190)
                      +|+...+..+..++..++++|+.++.+++++|.+.+          .++|++||..+||.....+..|...     ...+
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~  159 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETT  159 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTS
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcccCC
Confidence            999877666677888999999999999999997653          3899999999999765444333321     1235


Q ss_pred             CCCcccchhhhhHHHHhhhh
Q 029640          169 PIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       169 ~~~~~~~y~~~~~sK~~~E~  188 (190)
                      +..|.+.|   |.||..+|+
T Consensus       160 ~~~p~s~Y---g~sK~~~E~  176 (361)
T d1kewa_         160 AYAPSSPY---SASKASSDH  176 (361)
T ss_dssp             CCCCCSHH---HHHHHHHHH
T ss_pred             CCCCCCHH---HHHHHHHHH
Confidence            55666777   888999986

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=4e-23  Score=163.30  Aligned_cols=149  Identities=30%  Similarity=0.377  Sum_probs=122.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh------hcCCceEEEeccccccc-----cCCcC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW------IGHPRFELIRHDVTEPL-----LIEVD   99 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~------~~~~~~~~~~~D~~~~~-----~~~~d   99 (190)
                      +.|++|||||+||||++|++.|++. |++|++++|........+..+      .....++++.+|+.|..     ...++
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~   93 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKL-DQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD   93 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHC-cCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccccccc
Confidence            4579999999999999999999999 899999987554443322221      12257899999999864     34689


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhh
Q 029640          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLK  178 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~  178 (190)
                      .++|+++......+..++...+++|+.++.+++++|.+.++ ++||+||..+||.....+++|+     .+..|.+.|  
T Consensus        94 ~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y--  166 (341)
T d1sb8a_          94 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVED-----TIGKPLSPY--  166 (341)
T ss_dssp             EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCSHH--
T ss_pred             ccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCC-----CCCCCCCcc--
Confidence            99999987666556778888999999999999999999997 9999999999998877788998     566667778  


Q ss_pred             hhHHHHhhhh
Q 029640          179 DGIMKLIGEL  188 (190)
Q Consensus       179 ~~~sK~~~E~  188 (190)
                       +.+|+.+|+
T Consensus       167 -~~sK~~~E~  175 (341)
T d1sb8a_         167 -AVTKYVNEL  175 (341)
T ss_dssp             -HHHHHHHHH
T ss_pred             -hHHHHHHHH
Confidence             888999996

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.89  E-value=2.9e-23  Score=163.03  Aligned_cols=147  Identities=35%  Similarity=0.446  Sum_probs=117.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCe------EEEEcCCCC-CChhhhhhhhcCCceEEEeccccccc-----cCCcCE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNE------VIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQ  100 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~------v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~  100 (190)
                      |||+||||+||||+++++.|+++ |++      +..+++... .....+........+.++.+|..+..     ...+|+
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~-g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~   79 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAG-AYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDA   79 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-SCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccce
Confidence            68999999999999999999998 554      444433221 22222333334568999999998864     356999


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhh
Q 029640          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKD  179 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~  179 (190)
                      |+|+|+.........++.+.+++|+.++.+++++|.+.++ ++||+||..+|+.....+++|+     .+..+.+.|   
T Consensus        80 vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~-----~~~~p~~~Y---  151 (322)
T d1r6da_          80 IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPY---  151 (322)
T ss_dssp             EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT-----SCCCCCSHH---
T ss_pred             EEeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCCCC-----CCCCCCCHH---
Confidence            9999987776666778888999999999999999999987 8999999999998888888998     567777788   


Q ss_pred             hHHHHhhhh
Q 029640          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      +.+|..+|.
T Consensus       152 ~~sK~~~E~  160 (322)
T d1r6da_         152 AASKAGSDL  160 (322)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888999985

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=9e-23  Score=161.15  Aligned_cols=149  Identities=26%  Similarity=0.387  Sum_probs=117.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------cCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~~d~vi~~ag  106 (190)
                      ||||||||+||||++|++.|++++..+|+++++....    ...+....++.++++|+++..      ..++|+|||+|+
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~----~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~   76 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA----ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA   76 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG----GGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcc----hhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence            6899999999999999999999944689998775332    223334568999999998753      236999999999


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccC--CCCCCcccchhhhhHHHH
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN--VNPIGMFSFVLKDGIMKL  184 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~--~~~~~~~~~y~~~~~sK~  184 (190)
                      .........++...+.+|+.++.+++++|.+.+.+++++||..+|+.......+|..+..  .....+...|   +.||.
T Consensus        77 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y---~~sK~  153 (342)
T d2blla1          77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY---SVSKQ  153 (342)
T ss_dssp             CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHH---HHHHH
T ss_pred             cccccccccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcchh---hhccc
Confidence            877666667788899999999999999999999999999999999987766666654322  1223344556   88899


Q ss_pred             hhhh
Q 029640          185 IGEL  188 (190)
Q Consensus       185 ~~E~  188 (190)
                      .+|+
T Consensus       154 ~~E~  157 (342)
T d2blla1         154 LLDR  157 (342)
T ss_dssp             HHHH
T ss_pred             chhh
Confidence            9986

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=1.7e-22  Score=158.02  Aligned_cols=147  Identities=24%  Similarity=0.231  Sum_probs=119.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhhcCCceEEEecccccccc-------CCcCEEEEc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHL  104 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~~  104 (190)
                      |+||||||+||||++|++.|+++ |++|++++|..... ...+..+....++.++.+|+.|...       ...++++|+
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~-g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~   79 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEK-GYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNL   79 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-cCEEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhccccccccccc
Confidence            68999999999999999999999 89999998865433 2334444444689999999998643       247889999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHH
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIM  182 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~s  182 (190)
                      |+.........++.+.+++|+.++.+++++|++.+.  ++++.||..+|+.....+.+|+     ++..+.+.|   +.+
T Consensus        80 a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~-----~~~~p~~~Y---~~s  151 (321)
T d1rpna_          80 AAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN-----TPFYPRSPY---GVA  151 (321)
T ss_dssp             CSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHH---HHH
T ss_pred             cccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCC-----CCccccChh---HHH
Confidence            887666556677888999999999999999999885  6888888889988777777887     566677788   888


Q ss_pred             HHhhhh
Q 029640          183 KLIGEL  188 (190)
Q Consensus       183 K~~~E~  188 (190)
                      |..+|+
T Consensus       152 K~~~E~  157 (321)
T d1rpna_         152 KLYGHW  157 (321)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999986

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.87  E-value=7.4e-22  Score=156.31  Aligned_cols=152  Identities=31%  Similarity=0.338  Sum_probs=111.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC--CCCCh-hhhhhhhcCCceEEEeccccccc-----cCCcCEEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY--FTGSK-DNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~--~~~~~-~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~  103 (190)
                      ||+||||||+||||++|++.|+++ |++|.++.++  ..... ..+.. ....++.++.+|+.|..     ..+++.|+|
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~-g~~v~v~~~d~~~~~~~~~~~~~-~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~   79 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNN-HPDVHVTVLDKLTYAGNKANLEA-ILGDRVELVVGDIADAELVDKLAAKADAIVH   79 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHH-CTTCEEEEEECCCTTCCGGGTGG-GCSSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHC-CCCeEEEEEeCCCccccHHHHHH-hhcCCeEEEEccCCCHHHHHHHHhhhhhhhh
Confidence            589999999999999999999999 6765554432  21111 11222 22458999999999864     356899999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCC---CCCCC----CCCccCCCCCCcccch
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL---VHPQD----ESYWGNVNPIGMFSFV  176 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~---~~~~~----e~~~~~~~~~~~~~~y  176 (190)
                      +|+......+..++.+.+++|+.++.++++.+...+.++|++||..+||...   ..+..    ...+...++..|.+.|
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y  159 (346)
T d1oc2a_          80 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPY  159 (346)
T ss_dssp             CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHH
T ss_pred             hhhcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecccCccccccccccCcccccccCCCCCCCCHH
Confidence            9987776666678889999999999999999999999999999999998421   11111    1111223566666778


Q ss_pred             hhhhHHHHhhhh
Q 029640          177 LKDGIMKLIGEL  188 (190)
Q Consensus       177 ~~~~~sK~~~E~  188 (190)
                         +.+|+.+|+
T Consensus       160 ---~~sK~~~E~  168 (346)
T d1oc2a_         160 ---SSTKAASDL  168 (346)
T ss_dssp             ---HHHHHHHHH
T ss_pred             ---HHHHHHHHH
Confidence               888999985

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2.7e-22  Score=156.58  Aligned_cols=133  Identities=20%  Similarity=0.226  Sum_probs=104.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-------cCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-------~~~~d~vi~~a  105 (190)
                      ||||||||+||||++|++.|+++ ++.+++++++.+                   +|+.+..       ..++|.|||+|
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~-g~~vi~~~~~~~-------------------~~~~~~~~~~~~~~~~~~d~v~~~a   62 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQR-GDVELVLRTRDE-------------------LNLLDSRAVHDFFASERIDQVYLAA   62 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTC-TTEEEECCCTTT-------------------CCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHC-cCEEEEecCchh-------------------ccccCHHHHHHHHhhcCCCEEEEcc
Confidence            68999999999999999999999 788777655432                   2333321       23589999999


Q ss_pred             CCCCCc-ccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHH
Q 029640          106 CPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMK  183 (190)
Q Consensus       106 g~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK  183 (190)
                      +..... .....+.+.+++|+.++.+++++|.+.++ |+||+||.++||.....+++|+.+....+..+.+.|   +.||
T Consensus        63 ~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y---~~sK  139 (315)
T d1e6ua_          63 AKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY---AIAK  139 (315)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHH---HHHH
T ss_pred             hhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHH---HHHH
Confidence            765532 23455667889999999999999999997 899999999999888778898865444555455567   8889


Q ss_pred             Hhhhh
Q 029640          184 LIGEL  188 (190)
Q Consensus       184 ~~~E~  188 (190)
                      +.+|+
T Consensus       140 ~~~E~  144 (315)
T d1e6ua_         140 IAGIK  144 (315)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99996

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=1.1e-21  Score=156.12  Aligned_cols=149  Identities=22%  Similarity=0.234  Sum_probs=115.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~a  105 (190)
                      ++|+||||||+||||++|++.|+++ |++|+++++.........     .....+..+|+.+..     ..++|+|||+|
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~-g~~V~~~d~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHE-GHYVIASDWKKNEHMTED-----MFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCSSSCGG-----GTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEeCCCccchhhh-----cccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            6799999999999999999999999 899999977544322111     124567778888753     35799999999


Q ss_pred             CCCCCccc-ccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCc--cCCCCCCcccchhhhhH
Q 029640          106 CPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYW--GNVNPIGMFSFVLKDGI  181 (190)
Q Consensus       106 g~~~~~~~-~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~--~~~~~~~~~~~y~~~~~  181 (190)
                      +....... ...+...+..|+.++.+++++|.+.++ |+|++||..+|+.....+.+|..+  ....+..+.+.|   +.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Y---g~  164 (363)
T d2c5aa1          88 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAF---GL  164 (363)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHH---HH
T ss_pred             cccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCHH---HH
Confidence            86654332 456778899999999999999999997 899999999999766656555532  223456666788   88


Q ss_pred             HHHhhhh
Q 029640          182 MKLIGEL  188 (190)
Q Consensus       182 sK~~~E~  188 (190)
                      +|+.+|.
T Consensus       165 sK~~~E~  171 (363)
T d2c5aa1         165 EKLATEE  171 (363)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8999985

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.1e-21  Score=155.24  Aligned_cols=149  Identities=28%  Similarity=0.407  Sum_probs=113.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC------CChhhhhh--hhcCCceEEEecccccccc-------C
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT------GSKDNLRK--WIGHPRFELIRHDVTEPLL-------I   96 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~------~~~~~~~~--~~~~~~~~~~~~D~~~~~~-------~   96 (190)
                      .+|||||||+||||++|++.|+++ |++|+++++...      ........  .....++.++++|++|...       .
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~-g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~   80 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEA-GYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY   80 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHT-TCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHC-cCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccccc
Confidence            378999999999999999999999 899999864221      11122221  1235689999999998743       3


Q ss_pred             CcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccc
Q 029640           97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSF  175 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~  175 (190)
                      .+++++|+|+...+..+..++.+.+++|+.++.++++++++.++ ++||+||..+|+........++.    ....+.+.
T Consensus        81 ~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~----~~~~~~~~  156 (346)
T d1ek6a_          81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH----PTGGCTNP  156 (346)
T ss_dssp             CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTS----CCCCCSSH
T ss_pred             ccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccccccc----cccccCCh
Confidence            47789999998776666778889999999999999999999997 89999999999976543323221    23334456


Q ss_pred             hhhhhHHHHhhhh
Q 029640          176 VLKDGIMKLIGEL  188 (190)
Q Consensus       176 y~~~~~sK~~~E~  188 (190)
                      |   +.+|+.+|+
T Consensus       157 Y---~~~k~~~e~  166 (346)
T d1ek6a_         157 Y---GKSKFFIEE  166 (346)
T ss_dssp             H---HHHHHHHHH
T ss_pred             H---HHHHHHHHH
Confidence            7   888999885

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.85  E-value=4.6e-21  Score=151.70  Aligned_cols=150  Identities=20%  Similarity=0.224  Sum_probs=114.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIY  102 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi  102 (190)
                      .++||||||||+||||+++++.|++. |++|.+++|+.......+........+.++.+|++|...       ..+|+|+
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~-g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~   84 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTM-GATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVF   84 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhh
Confidence            48899999999999999999999999 899999999877665554444445679999999998753       2589999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-e-EEEEecceecCCCC-CCCCCCCCccCCCCCCcccchhhh
Q 029640          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-R-ILLTSTSEVYGDPL-VHPQDESYWGNVNPIGMFSFVLKD  179 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~-~i~vSS~~~~~~~~-~~~~~e~~~~~~~~~~~~~~y~~~  179 (190)
                      |+|+......+...+...+.+|+.++.++++++.+.+. + +++.|+..++.... ..+.+|+     .+..+...|   
T Consensus        85 ~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-----~~~~p~~~y---  156 (356)
T d1rkxa_          85 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN-----EAMGGYDPY---  156 (356)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTT-----SCBCCSSHH---
T ss_pred             hhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccc-----cccCCCCcc---
Confidence            99997776666778889999999999999999998875 4 44444444444333 3344444     455566677   


Q ss_pred             hHHHHhhhh
Q 029640          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      +.+|...|.
T Consensus       157 ~~~k~~~e~  165 (356)
T d1rkxa_         157 SNSKGCAEL  165 (356)
T ss_dssp             HHHHHHHHH
T ss_pred             ccccccchh
Confidence            666887764

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.85  E-value=8.8e-21  Score=148.62  Aligned_cols=151  Identities=27%  Similarity=0.353  Sum_probs=108.1

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhhhhhcCCceEEEecccccccc-------CCcCEEEEcc
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLA  105 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~~a  105 (190)
                      |||||||+||||++|++.|+++ |++|+++++-..... ..+..+....+++++.+|+.+...       .++|+|||+|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~-g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~a   80 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA   80 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             EEEEECCCcHHHHHHHHHHHHC-cCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeec
Confidence            7999999999999999999999 899999875433322 333444455689999999998642       2579999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecce-ecCCCCCCCCCCCCc-----------cCCCCCCc
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE-VYGDPLVHPQDESYW-----------GNVNPIGM  172 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~-~~~~~~~~~~~e~~~-----------~~~~~~~~  172 (190)
                      +.........++...+++|+.++.+++++|.+.++ ++|++||+. +++.....+..+...           ....+..+
T Consensus        81 a~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (338)
T d1orra_          81 GQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDF  160 (338)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCCC
T ss_pred             ccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCcccc
Confidence            98776556667889999999999999999999986 666666655 444433322221110           11233444


Q ss_pred             ccchhhhhHHHHhhhh
Q 029640          173 FSFVLKDGIMKLIGEL  188 (190)
Q Consensus       173 ~~~y~~~~~sK~~~E~  188 (190)
                      .+.|   +.+|...|.
T Consensus       161 ~~~y---~~~k~~~e~  173 (338)
T d1orra_         161 HSPY---GCSKGAADQ  173 (338)
T ss_dssp             CHHH---HHHHHHHHH
T ss_pred             cccc---ccccchhhh
Confidence            5556   777988875

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=99.84  E-value=3.2e-21  Score=148.56  Aligned_cols=130  Identities=22%  Similarity=0.198  Sum_probs=104.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~~a  105 (190)
                      ||||||||+||||++|++.|.++ ++.|.+..++ ..                +.+|+.|...       .++|+|||+|
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~-g~~v~~~~~~-~~----------------~~~Dl~~~~~~~~~i~~~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPV-GNLIALDVHS-KE----------------FCGDFSNPKGVAETVRKLRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTT-SEEEEECTTC-SS----------------SCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-CCEEEEECCC-cc----------------ccCcCCCHHHHHHHHHHcCCCEEEEec
Confidence            68999999999999999999988 6655554332 21                2256665432       2589999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHh
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      |...+..+...+...+..|+.++.+++++|++.+.+++++||+.+|+.....+++|+     .+..+.+.|   +.+|..
T Consensus        63 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ss~~~~~~~~~~~~~E~-----~~~~p~~~y---~~~k~~  134 (298)
T d1n2sa_          63 AHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQET-----DATSPLNVY---GKTKLA  134 (298)
T ss_dssp             CCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTT-----SCCCCSSHH---HHHHHH
T ss_pred             ccccccccccCccccccccccccccchhhhhccccccccccccccccCCCCCCCccc-----cccCCCchH---hhhhhh
Confidence            987776677888889999999999999999999999999999999988887788888     455566777   666998


Q ss_pred             hhh
Q 029640          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      +|.
T Consensus       135 ~e~  137 (298)
T d1n2sa_         135 GEK  137 (298)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            875

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.83  E-value=3.3e-20  Score=148.60  Aligned_cols=154  Identities=27%  Similarity=0.365  Sum_probs=110.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC---CC------hhhhhhh---------hcCCceEEEecccccc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT---GS------KDNLRKW---------IGHPRFELIRHDVTEP   93 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~---~~------~~~~~~~---------~~~~~~~~~~~D~~~~   93 (190)
                      +||||||||+||||++|++.|+++++++|+++++-..   ..      ......+         .....+.++.+|++|.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~   81 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence            5799999999999999999999876899999864110   00      0101111         0123678899999986


Q ss_pred             cc--------CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCC--
Q 029640           94 LL--------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDES--  162 (190)
Q Consensus        94 ~~--------~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~--  162 (190)
                      ..        ..+|+|||+|+..........+...+++|+.++.++++++++.++ +++++||..+|+........++  
T Consensus        82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  161 (383)
T d1gy8a_          82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAE  161 (383)
T ss_dssp             HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCC
T ss_pred             HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccccccccc
Confidence            42        357999999997776555667778899999999999999999997 8999999998886543322211  


Q ss_pred             CccCCCCCCcccchhhhhHHHHhhhh
Q 029640          163 YWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       163 ~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      ......+..|.+.|   +.+|+.+|+
T Consensus       162 ~~~e~~~~~p~~~Y---~~sK~~~e~  184 (383)
T d1gy8a_         162 PIDINAKKSPESPY---GESKLIAER  184 (383)
T ss_dssp             CBCTTSCCBCSSHH---HHHHHHHHH
T ss_pred             ccccccCCCCCCHH---HhhHhHHHH
Confidence            11222566677788   888999886

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=3.7e-20  Score=148.70  Aligned_cols=152  Identities=29%  Similarity=0.407  Sum_probs=106.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC-------------CCCCCh---hhhhhh--hcCCceEEEecccccc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN-------------YFTGSK---DNLRKW--IGHPRFELIRHDVTEP   93 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r-------------~~~~~~---~~~~~~--~~~~~~~~~~~D~~~~   93 (190)
                      |||||||||+||||++|++.|++. |++|++++.             +.....   ..+..+  ....+++++.+|+.|.
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~-g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~   79 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKK-NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF   79 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHC-cCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence            689999999999999999999999 899999851             001111   111111  1235789999999987


Q ss_pred             cc-------CCcCEEEEccCCCCCcccccC---chhHHHHHHHHHHHHHHHHHHcCC--eEEEEecceecCCCCCCCCCC
Q 029640           94 LL-------IEVDQIYHLACPASPIFYKYN---PVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDE  161 (190)
Q Consensus        94 ~~-------~~~d~vi~~ag~~~~~~~~~~---~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS~~~~~~~~~~~~~e  161 (190)
                      +.       .++|+|||+|+......+..+   +..++.+|+.++.+++++|++.+.  ++++.||..+|+.... +..|
T Consensus        80 ~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~-~~~~  158 (393)
T d1i24a_          80 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIEE  158 (393)
T ss_dssp             HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSS-CBCS
T ss_pred             HHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccc-cccc
Confidence            43       258999999987665444333   446789999999999999999885  5777777778875432 2232


Q ss_pred             CCc-------c--CCCCCCcccchhhhhHHHHhhhh
Q 029640          162 SYW-------G--NVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       162 ~~~-------~--~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      ...       .  ...+..+.+.|   +.||+.+|.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~p~~~Y---~~sK~~aE~  191 (393)
T d1i24a_         159 GYITITHNGRTDTLPYPKQASSFY---HLSKVHDSH  191 (393)
T ss_dssp             SEEEEEETTEEEEEECCCCCCSHH---HHHHHHHHH
T ss_pred             ccccccccccccccccccccccHH---HHHhhhhcc
Confidence            211       0  11345566678   888999986

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=4e-20  Score=145.31  Aligned_cols=146  Identities=22%  Similarity=0.230  Sum_probs=111.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhh------hcCCceEEEecccccccc-------CCc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKW------IGHPRFELIRHDVTEPLL-------IEV   98 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~------~~~~~~~~~~~D~~~~~~-------~~~   98 (190)
                      |++|||||+||||++|++.|+++ |++|++++|..... ...+..+      .....+.+..+|+.+...       .++
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~   80 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGK-GYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP   80 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHC-cCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhcc
Confidence            78999999999999999999999 89999999864321 1111111      123468888999998643       368


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC------CeEEEEecceecCCCCCCCCCCCCccCCCCCCc
Q 029640           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG------ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGM  172 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~------~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~  172 (190)
                      |+|||+|+......+.+++...+..|+.++.+++++++...      .++++.||..+|+... .+++|+     .+..|
T Consensus        81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~-~~~~E~-----~~~~p  154 (339)
T d1n7ha_          81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTP-PPQSET-----TPFHP  154 (339)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSC-SSBCTT-----SCCCC
T ss_pred             chhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCC-CCCCCC-----CCCCC
Confidence            99999999766655567888899999999999999886532      2677777777776544 467887     56677


Q ss_pred             ccchhhhhHHHHhhhh
Q 029640          173 FSFVLKDGIMKLIGEL  188 (190)
Q Consensus       173 ~~~y~~~~~sK~~~E~  188 (190)
                      .+.|   +.+|+.+|+
T Consensus       155 ~~~Y---~~sK~~~E~  167 (339)
T d1n7ha_         155 RSPY---AASKCAAHW  167 (339)
T ss_dssp             CSHH---HHHHHHHHH
T ss_pred             cchh---hHHHHHHHH
Confidence            7888   888999996

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.81  E-value=1.6e-19  Score=142.66  Aligned_cols=151  Identities=25%  Similarity=0.230  Sum_probs=106.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh---hcC-CceEEEeccccccc-----cCCcCE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGH-PRFELIRHDVTEPL-----LIEVDQ  100 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~---~~~-~~~~~~~~D~~~~~-----~~~~d~  100 (190)
                      ..|++||||||+||||++|++.|+++ |++|+++.|+..... .+...   ... .....+.+|+.+..     +.++|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~-G~~V~~~vR~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEH-GYKVRGTARSASKLA-NLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHH-HHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEeCCchhHH-HHHHhhhccccccccEEEeccccchhhhhhhcccchh
Confidence            36899999999999999999999999 899999988643222 12111   112 23445668988753     457999


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecceecCCCC----CCCCCCCCcc---------
Q 029640          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPL----VHPQDESYWG---------  165 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~~~~~~~----~~~~~e~~~~---------  165 (190)
                      |+|+++....   ..++...+.+|+.++.+++++|.+.+ + ++||+||..+++...    ....+|+.|+         
T Consensus        87 v~~~a~~~~~---~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  163 (342)
T d1y1pa1          87 VAHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKT  163 (342)
T ss_dssp             EEECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHH
T ss_pred             hhhhcccccc---cccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCcccccccccccccccccc
Confidence            9999986543   34566788999999999999998875 4 899999987543221    2234444432         


Q ss_pred             --CCCCCCcccchhhhhHHHHhhhh
Q 029640          166 --NVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       166 --~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                        ...+..+...|   +.+|..+|+
T Consensus       164 ~~e~~~~~p~~~Y---~~sK~~~E~  185 (342)
T d1y1pa1         164 LPESDPQKSLWVY---AASKTEAEL  185 (342)
T ss_dssp             SCTTSTTHHHHHH---HHHHHHHHH
T ss_pred             ccccCCCCCcCcc---cchhHhHHH
Confidence              12334344455   888999986

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.6e-18  Score=127.60  Aligned_cols=111  Identities=16%  Similarity=0.210  Sum_probs=89.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~  104 (190)
                      |.++||+||||+|+||+++++.|+++ |++|+++.|++...+..     ....++++.+|+.|.+     +.++|+|||+
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~-g~~V~~~~R~~~~~~~~-----~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~   74 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDSSRLPSE-----GPRPAHVVVGDVLQAADVDKTVAGQDAVIVL   74 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCGGGSCSS-----SCCCSEEEESCTTSHHHHHHHHTTCSEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-cCEEEEEEcChhhcccc-----cccccccccccccchhhHHHHhcCCCEEEEE
Confidence            46899999999999999999999999 89999999976543322     1357899999999864     4579999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCC
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD  153 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~  153 (190)
                      +|.....    .+   ..++..++.+++++++++++ |+|++||.+++..
T Consensus        75 ~g~~~~~----~~---~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~  117 (205)
T d1hdoa_          75 LGTRNDL----SP---TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWD  117 (205)
T ss_dssp             CCCTTCC----SC---CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSC
T ss_pred             eccCCch----hh---hhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCC
Confidence            9864321    11   24567789999999999997 8999999887764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.5e-18  Score=130.12  Aligned_cols=119  Identities=15%  Similarity=0.102  Sum_probs=92.6

Q ss_pred             cccccCCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcC
Q 029640           26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVD   99 (190)
Q Consensus        26 ~~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d   99 (190)
                      .++.|++++|+|||||||||+++++.|++++. ++|+++.|++.......     ...+.+..+|+.+..     +.++|
T Consensus         8 ~~~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~-----~~~i~~~~~D~~~~~~~~~~~~~~d   82 (232)
T d2bkaa1           8 EDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-----YKNVNQEVVDFEKLDDYASAFQGHD   82 (232)
T ss_dssp             HHHHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-----GGGCEEEECCGGGGGGGGGGGSSCS
T ss_pred             HHhCCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc-----cceeeeeeecccccccccccccccc
Confidence            35557889999999999999999999999943 48999999765443322     235677778887643     45799


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecC
Q 029640          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG  152 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~  152 (190)
                      ++||++|...   ......+++++|+.++.+++++|.+.++ ++|++||..++.
T Consensus        83 ~vi~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~  133 (232)
T d2bkaa1          83 VGFCCLGTTR---GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADK  133 (232)
T ss_dssp             EEEECCCCCH---HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT
T ss_pred             cccccccccc---cccchhhhhhhcccccceeeecccccCccccccCCcccccc
Confidence            9999998543   2234566789999999999999999998 799999977654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.74  E-value=5.6e-18  Score=129.37  Aligned_cols=127  Identities=29%  Similarity=0.292  Sum_probs=103.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-------cCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-------~~~~d~vi~~a  105 (190)
                      |||+||||+||||++|++.|.++ |++|++++|+.                    +|+.|..       ..++|+|||+|
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~-g~~Vi~~~r~~--------------------~D~~d~~~~~~~l~~~~~d~vih~a   60 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGK-NVEVIPTDVQD--------------------LDITNVLAVNKFFNEKKPNVVINCA   60 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTS-SEEEEEECTTT--------------------CCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-CCEEEEeechh--------------------ccCCCHHHHHHHHHHcCCCEEEeec
Confidence            78999999999999999999998 89999998853                    2343332       13689999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHh
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      +......+...+...+..|......+.+.+.....+++++||..+|+.....+.+|.     ++..+...|   +.+|..
T Consensus        61 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ss~~v~~~~~~~~~~e~-----~~~~~~~~~---~~~k~~  132 (281)
T d1vl0a_          61 AHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEF-----DEVNPQSAY---GKTKLE  132 (281)
T ss_dssp             CCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTT-----SCCCCCSHH---HHHHHH
T ss_pred             cccccccccccchhhcccccccccccccccccccccccccccceeeecccccccccc-----ccccchhhh---hhhhhH
Confidence            987766666777888899999999999999998889999999999998887788887     455555566   666888


Q ss_pred             hhh
Q 029640          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      .|+
T Consensus       133 ~e~  135 (281)
T d1vl0a_         133 GEN  135 (281)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            775

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=9.4e-17  Score=121.69  Aligned_cols=120  Identities=18%  Similarity=0.111  Sum_probs=92.4

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEeccccccc------------
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL------------   94 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~------------   94 (190)
                      .+++|+++||||++.||+++++.|+++ |++|.+++|+.+...+...++..  ..++.++++|+++++            
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEA-GCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK   80 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            368999999999999999999999999 89999999976655544444322  357888999999864            


Q ss_pred             cCCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecce
Q 029640           95 LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSE  149 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~  149 (190)
                      +.++|++|||||......    ..+.++..+++|+.++.++.+.+.    +.+ .++|++||..
T Consensus        81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~  144 (251)
T d1vl8a_          81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLT  144 (251)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGG
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccch
Confidence            236999999999654322    223455679999999999988764    334 3899999854

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=99.69  E-value=7e-17  Score=122.41  Aligned_cols=121  Identities=18%  Similarity=0.146  Sum_probs=94.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~   97 (190)
                      +++|+++||||++.||+++++.|+++ |++|.+.+|+.+..+.....+....++.++.+|++|++            +.+
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   82 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEE-GAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGP   82 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            48899999999999999999999999 89999999976555544444444568999999999874            236


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC--CeEEEEecceec
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~i~vSS~~~~  151 (190)
                      +|++|||||......    ..+.+...+++|+.++.++.+++.    +.+  .++|++||...+
T Consensus        83 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~  146 (251)
T d1zk4a1          83 VSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGF  146 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGT
T ss_pred             ceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeecccee
Confidence            999999999765432    223355689999999999988763    333  378999996543

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=99.68  E-value=7.5e-17  Score=122.39  Aligned_cols=119  Identities=18%  Similarity=0.162  Sum_probs=93.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++|+++||||++.||+++++.|+++ |++|++.+|+.+.......++  ..++.++++|+++++.            .+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAA-GARVVLADVLDEEGAATAREL--GDAARYQHLDVTIEEDWQRVVAYAREEFGS   79 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh--CCceEEEEcccCCHHHHHHHHHHHHHHcCC
Confidence            48999999999999999999999999 899999999765555444443  2478899999998642            36


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                      +|++|||||.......    .+.+...+++|+.++.++.+.+.    +.+. ++|++||...+
T Consensus        80 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~  142 (254)
T d1hdca_          80 VDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGL  142 (254)
T ss_dssp             CCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             ccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhc
Confidence            9999999997654322    23355679999999999888763    3343 99999997644

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=8.7e-17  Score=121.36  Aligned_cols=119  Identities=18%  Similarity=0.134  Sum_probs=92.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++|+++||||++.||+++++.|+++ |++|++.+|+.+.......++  ..++.++++|++|++.            .+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   80 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAE-GAKVVFGDILDEEGKAMAAEL--ADAARYVHLDVTQPAQWKAAVDTAVTAFGG   80 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh--hCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            48899999999999999999999999 899999999765544444443  2468889999999742            35


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceec
Q 029640           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~  151 (190)
                      +|++|||||.......    .+.+.+.+++|+.++..+.+.+    ++.+ .++|++||...+
T Consensus        81 idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~  143 (244)
T d1nffa_          81 LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGL  143 (244)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             CeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccc
Confidence            9999999997654322    2345567999999999888766    3333 389999996644

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=99.68  E-value=1.2e-16  Score=121.76  Aligned_cols=123  Identities=13%  Similarity=0.066  Sum_probs=92.1

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhh-hh--hcCCceEEEecccccccc----------
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR-KW--IGHPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~-~~--~~~~~~~~~~~D~~~~~~----------   95 (190)
                      ++++|+++||||++.||+++++.|+++ |++|.+.+|+.....+.+. .+  ....++.++.+|++|++.          
T Consensus         1 ~L~gK~alITGas~GIG~aiA~~la~~-Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (260)
T d1x1ta1           1 MLKGKVAVVTGSTSGIGLGIATALAAQ-GADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVR   79 (260)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred             CCCcCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            368999999999999999999999999 8999999987543222222 22  124578899999999642          


Q ss_pred             --CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029640           96 --IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 --~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                        .++|++|||||.......    .+.+...+++|+.++.++.+.+    ++.+. ++|++||...+.
T Consensus        80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~  147 (260)
T d1x1ta1          80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV  147 (260)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred             HhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccccee
Confidence              369999999997654322    2345567999999998887766    34444 999999976443

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.67  E-value=2.3e-16  Score=118.49  Aligned_cols=111  Identities=22%  Similarity=0.211  Sum_probs=86.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++|+++||||++.||+++++.|+++ |++|++++|+.+...          ++..+++|++|++.            .+
T Consensus         5 l~gK~~lITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~----------~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   73 (237)
T d1uzma1           5 FVSRSVLVTGGNRGIGLAIAQRLAAD-GHKVAVTHRGSGAPK----------GLFGVEVDVTDSDAVDRAFTAVEEHQGP   73 (237)
T ss_dssp             CCCCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSSCCCT----------TSEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCcchhc----------CceEEEEecCCHHHHHHHHHHHHHhcCC
Confidence            48899999999999999999999999 899999999765432          56778999999742            36


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      +|++|||||......    ..+.++..+++|+.++..+.+.+    ++.+. ++|++||...+
T Consensus        74 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~  136 (237)
T d1uzma1          74 VEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGL  136 (237)
T ss_dssp             CSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-
T ss_pred             ceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhc
Confidence            999999999765422    22345668999999998887655    44454 89999996643

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=99.67  E-value=1.6e-16  Score=120.99  Aligned_cols=124  Identities=16%  Similarity=0.117  Sum_probs=94.5

Q ss_pred             ccccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc-----------
Q 029640           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL-----------   94 (190)
Q Consensus        27 ~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~-----------   94 (190)
                      .|.++||+++||||++.||+++++.|+++ |++|++.+|+.+...+...++.. ...+.++.+|+++++           
T Consensus         3 ~f~L~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d2ae2a_           3 RWNLEGCTALVTGGSRGIGYGIVEELASL-GASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVAN   81 (259)
T ss_dssp             TTCCTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHH
Confidence            34578999999999999999999999999 89999999976655554444432 357788999999863           


Q ss_pred             -cC-CcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029640           95 -LI-EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        95 -~~-~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                       +. ++|++|||||.......    .+.++..+++|+.++..+.+++.    +.+. ++|++||....
T Consensus        82 ~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~  149 (259)
T d2ae2a_          82 HFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGA  149 (259)
T ss_dssp             HTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGT
T ss_pred             HhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccc
Confidence             22 59999999996654322    23455689999999998887763    3343 89999996643

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=99.67  E-value=2.1e-16  Score=120.83  Aligned_cols=121  Identities=17%  Similarity=0.164  Sum_probs=93.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++|+++||||++.||+++++.|+++ |++|++++|+.+..+....++.....+.++.+|+++++.            .+
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRY-GAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK   82 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            48999999999999999999999999 899999999766555555555555678889999998642            36


Q ss_pred             cCEEEEccCCCCCc---c---cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASPI---F---YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~---~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                      +|++|||||.....   .   ..+.++..+++|+.++..+.+.+.    +.+. ++|++||...+
T Consensus        83 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~  147 (268)
T d2bgka1          83 LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSF  147 (268)
T ss_dssp             CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGT
T ss_pred             cceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccccccc
Confidence            99999999965432   1   123355679999999998887763    3344 89999986644

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=99.67  E-value=5.8e-16  Score=117.01  Aligned_cols=120  Identities=20%  Similarity=0.164  Sum_probs=91.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~   97 (190)
                      +++|+++||||++.||+++++.|+++ |++|.+.+|+.........+ ....++..+++|++|+.            +.+
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~-Ga~V~~~~~~~~~~~~~~~~-~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~   80 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVE-GADIAIADLVPAPEAEAAIR-NLGRRVLTVKCDVSQPGDVEAFGKQVISTFGR   80 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCHHHHHHHH-HTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCchHHHHHHHH-HcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            48899999999999999999999999 89999999875432222111 12357889999999874            236


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      +|++|||||......    ..+.++..+++|+.++..+.+++    ++.+. ++|++||....
T Consensus        81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~  143 (247)
T d2ew8a1          81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYW  143 (247)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGG
T ss_pred             CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhc
Confidence            999999999765432    22345668999999999888766    34443 89999997643

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=5.2e-16  Score=116.91  Aligned_cols=115  Identities=19%  Similarity=0.190  Sum_probs=87.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++|+++||||++.||+++++.|+++ |++|++.+|+.+.    +.+.....+..++.+|+++++.            .+
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~-G~~V~~~~r~~~~----l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   77 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKE-GARLVACDIEEGP----LREAAEAVGAHPVVMDVADPASVERGFAEALAHLGR   77 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHH----HHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHH----HHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCC
Confidence            47899999999999999999999999 8999999996443    3333334467889999998642            36


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecce
Q 029640           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSE  149 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~  149 (190)
                      +|++|||||...+...    .+.++..+++|+.++.++.+++.+    .+. .++++||..
T Consensus        78 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~  138 (242)
T d1ulsa_          78 LDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV  138 (242)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG
T ss_pred             ceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeecccc
Confidence            9999999997654322    234566899999999999887743    233 566666643

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=99.66  E-value=2.4e-16  Score=119.85  Aligned_cols=121  Identities=16%  Similarity=0.112  Sum_probs=92.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh---hcCCceEEEecccccccc-----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++|+++||||++.||+++++.|+++ |++|.+.+|+.+........+   ....++..+++|++|++.           
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAE-GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   80 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999 899999999765544333322   234578899999998742           


Q ss_pred             -CCcCEEEEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecceec
Q 029640           96 -IEVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~~  151 (190)
                       .++|++|||||...+.  .   +.+.++..+++|+.++.++.+++.    +.+ .++|++||...+
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~  147 (258)
T d1iy8a_          81 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGI  147 (258)
T ss_dssp             HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGT
T ss_pred             hCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhc
Confidence             3699999999965432  1   223455689999999999988763    233 489999996643

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.8e-16  Score=119.56  Aligned_cols=119  Identities=18%  Similarity=0.119  Sum_probs=91.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~   97 (190)
                      ++||+++||||++.||+++++.|+++ |++|++.+|+.+..+....++  ..++..+.+|+++++            +.+
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~-G~~Vv~~~r~~~~l~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   78 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAAR-GAKVIGTATSENGAQAISDYL--GANGKGLMLNVTDPASIESVLEKIRAEFGE   78 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHh--CCCCcEEEEEecCHHHhhhhhhhhhcccCC
Confidence            48999999999999999999999999 899999999755444333333  246788999999864            236


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceec
Q 029640           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~  151 (190)
                      +|++|||||.......    .+.+...+++|+.++..+.+++    ++++ .++|++||...+
T Consensus        79 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~  141 (243)
T d1q7ba_          79 VDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGT  141 (243)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred             cceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhc
Confidence            9999999987654322    2345567999999999988877    3344 499999997654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=4e-16  Score=117.97  Aligned_cols=116  Identities=21%  Similarity=0.210  Sum_probs=88.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~   97 (190)
                      ++||+++||||++.||+++++.|+++ |++|.+.+|+.+.. +...    ..+..++++|++|+.            +.+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~-G~~V~~~~~~~~~~-~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   76 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFARE-GALVALCDLRPEGK-EVAE----AIGGAFFQVDLEDERERVRFVEEAAYALGR   76 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSTTHH-HHHH----HHTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHH-HHHH----HcCCeEEEEeCCCHHHHHHHHHHHHHhcCC
Confidence            58999999999999999999999999 89999999975432 2222    224577899999864            236


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029640           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                      +|++|||||...+...    .++++..+++|+.++.++.+++.    +.+. ++|++||...+
T Consensus        77 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~  139 (248)
T d2d1ya1          77 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGL  139 (248)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGT
T ss_pred             CCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccccc
Confidence            9999999997654322    23455679999999999888774    3344 89999997644

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.66  E-value=2.4e-16  Score=119.77  Aligned_cols=119  Identities=20%  Similarity=0.187  Sum_probs=92.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++|+++||||++.||+++++.|+++ |++|.+.+|+.+.......++  ..++..+.+|+++++.            .+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~--~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   79 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVRE-GARVAIADINLEAARATAAEI--GPAACAIALDVTDQASIDRCVAELLDRWGS   79 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHT-TEEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh--CCceEEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999 899999999765554444444  3578899999998742            36


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceec
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~  151 (190)
                      +|++|||||......    ..+.++..+++|+.++..+.+.+..    .+  .++|++||...+
T Consensus        80 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~  143 (256)
T d1k2wa_          80 IDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGR  143 (256)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT
T ss_pred             ccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhc
Confidence            999999999765432    2234556799999999988876532    22  389999996643

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=1.7e-15  Score=116.32  Aligned_cols=142  Identities=22%  Similarity=0.316  Sum_probs=97.9

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEe-cccccc-----ccCCcCEEEEccCCC
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR-HDVTEP-----LLIEVDQIYHLACPA  108 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~D~~~~-----~~~~~d~vi~~ag~~  108 (190)
                      ||||||+||||++|++.|++++.++|+++++-....  ....+.......... .|+.+.     ....+++|+|.|+..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~   79 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT--KFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGG--GGHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcc--hhhcccccchhhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence            899999999999999999999335788886432221  112222222233332 222222     235689999999755


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhhhh
Q 029640          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      ...  ..+.......|+.++.++++++...++++++.||..+++.+......|+     .+..+.+.|   +.+|..+|.
T Consensus        80 ~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~i~~v~~ss~~~~~~~~~~~~~~~-----~~~~~~~~Y---~~~K~~~e~  149 (307)
T d1eq2a_          80 STT--EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVY---GYSKFLFDE  149 (307)
T ss_dssp             CTT--CCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSG-----GGCCCSSHH---HHHHHHHHH
T ss_pred             ccc--ccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccc---ccccchhhh
Confidence            432  3456667888899999999999999999999999888876665555554     344555677   888998885

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.66  E-value=2.4e-16  Score=119.36  Aligned_cols=123  Identities=16%  Similarity=0.074  Sum_probs=94.4

Q ss_pred             cccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------
Q 029640           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------   94 (190)
Q Consensus        28 ~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------   94 (190)
                      |.+++|.++||||++.||+++++.|+++ |++|++.+|+.+.......++.. ..++..+.+|+++++            
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~-Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   84 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKS-VSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE   84 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTT-SSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHh
Confidence            3468999999999999999999999999 89999999976554444444432 347899999999864            


Q ss_pred             cCCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           95 LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      +.++|++|||||......    ..+.++..+++|+.++..+.+++    ++.+. ++|++||...+
T Consensus        85 ~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~  150 (251)
T d2c07a1          85 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGL  150 (251)
T ss_dssp             CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHH
T ss_pred             cCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhc
Confidence            246999999999665432    22345668999999999888766    33443 99999997654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3e-16  Score=119.23  Aligned_cols=121  Identities=17%  Similarity=0.043  Sum_probs=92.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEeccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~------------   94 (190)
                      +++|+++||||++.||+++++.|+++ |++|++.+|+.+.......++.   ...++.++++|+++++            
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~-G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQ-GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            47899999999999999999999999 8999999997654444433333   2357889999999974            


Q ss_pred             cCCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC---CeEEEEecceec
Q 029640           95 LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG---ARILLTSTSEVY  151 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~---~~~i~vSS~~~~  151 (190)
                      +.++|++|||||...+..    +.+.++..+++|+.++.++.+.+.    +.+   .++|++||...+
T Consensus        87 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~  154 (257)
T d1xg5a_          87 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGH  154 (257)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGT
T ss_pred             cCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhc
Confidence            236999999999765432    234456679999999988877653    333   489999997643

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=5.8e-16  Score=117.53  Aligned_cols=121  Identities=17%  Similarity=0.156  Sum_probs=92.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------cC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~~   96 (190)
                      ++||+++||||++.||+++++.|+++ |++|++.+|+.+.......++.. ..++.++++|+++++            +.
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g   87 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATA-GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG   87 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            58999999999999999999999999 89999999976554444444432 357889999999864            23


Q ss_pred             CcCEEEEccCCCCCccc---ccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029640           97 EVDQIYHLACPASPIFY---KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~---~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                      ++|++|||||.......   .+.++..+++|+.++.++.+.+.    +.+. ++|++||...+
T Consensus        88 ~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~  150 (255)
T d1fmca_          88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAE  150 (255)
T ss_dssp             SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             CCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchh
Confidence            69999999996654322   23455679999999998887663    3344 89999986643

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.4e-16  Score=116.56  Aligned_cols=119  Identities=21%  Similarity=0.162  Sum_probs=90.5

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc--------cCCcCE
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQ  100 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~d~  100 (190)
                      .++||+++||||++.||+++++.|+++ |++|.+.+|+.+...+...+   ...+..+.+|+.|++        +.++|+
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~-G~~V~~~~r~~~~l~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~g~iDi   79 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHAT-GARVVAVSRTQADLDSLVRE---CPGIEPVCVDLGDWEATERALGSVGPVDL   79 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---STTCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHh---cCCCeEEEEeCCCHHHHHHHHHHhCCceE
Confidence            368999999999999999999999999 89999999965443333322   236788999999864        346999


Q ss_pred             EEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH-----cC-CeEEEEecceec
Q 029640          101 IYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR-----VG-ARILLTSTSEVY  151 (190)
Q Consensus       101 vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~-----~~-~~~i~vSS~~~~  151 (190)
                      +|||||......    +.+.++..+++|+.++.++.+.+.+     .+ .++|++||...+
T Consensus        80 lVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~  140 (244)
T d1pr9a_          80 LVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQ  140 (244)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT
T ss_pred             EEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccccccc
Confidence            999999765432    2234556799999999888776532     22 389999996643

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.65  E-value=3.6e-16  Score=115.13  Aligned_cols=108  Identities=20%  Similarity=0.232  Sum_probs=80.7

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCC--eEEEEcCCCCCChhhhhhhhcCCceEEEeccccc---cccCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE---PLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~d~vi~~ag~  107 (190)
                      |+|+|||||||||+++++.|+++ ++  +|.++.|++...         ..++.....|+.+   .....+|+|||++|.
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~-~~~~~v~~~~r~~~~~---------~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~   72 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAE---------HPRLDNPVGPLAELLPQLDGSIDTAFCCLGT   72 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHC-TTCCEEECCBSSCCCC---------CTTEECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhC-CCeEEEEEEeCCchhh---------cccccccccchhhhhhccccchheeeeeeee
Confidence            89999999999999999999999 54  677777654332         2234444444332   223458999999975


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecC
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG  152 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~  152 (190)
                      ...  .......+..+|+.++.+++++|++.++ +++++||.++++
T Consensus        73 ~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~  116 (212)
T d2a35a1          73 TIK--EAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADA  116 (212)
T ss_dssp             CHH--HHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT
T ss_pred             ecc--ccccccccccchhhhhhhccccccccccccccccccccccc
Confidence            432  2334567889999999999999999987 899999987765

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.65  E-value=2.7e-16  Score=119.61  Aligned_cols=124  Identities=17%  Similarity=0.123  Sum_probs=89.6

Q ss_pred             ccccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc-----------
Q 029640           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL-----------   94 (190)
Q Consensus        27 ~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~-----------   94 (190)
                      .|.+++|+++||||++.||+++++.|+++ |++|++++|+.+...+...++.. ..++..+.+|++++.           
T Consensus         3 ~F~LkgK~alVTGas~GIG~aiA~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   81 (259)
T d1xq1a_           3 RWSLKAKTVLVTGGTKGIGHAIVEEFAGF-GAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS   81 (259)
T ss_dssp             TTCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHH
Confidence            34578999999999999999999999999 89999999976555544444432 357899999999863           


Q ss_pred             -c-CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecceec
Q 029640           95 -L-IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVY  151 (190)
Q Consensus        95 -~-~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~~  151 (190)
                       + ..+|++|||||......    ..++++..+++|+.++..+.+.+.    +.+ .++|++||...+
T Consensus        82 ~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~  149 (259)
T d1xq1a_          82 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGV  149 (259)
T ss_dssp             HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-----
T ss_pred             HhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccccc
Confidence             1 24999999999765432    223456689999999998887663    334 499999996643

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.65  E-value=2.2e-16  Score=119.74  Aligned_cols=119  Identities=18%  Similarity=0.125  Sum_probs=91.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++|+++||||++.||+++++.|+++ |++|.+.+|+.+...+...++  ..+..++++|++++..            .+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   80 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGE-GAKVAFSDINEAAGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQRRLGT   80 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh--CCCeEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            48899999999999999999999999 899999998655444444433  3467889999998642            36


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceec
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~  151 (190)
                      +|++|||||...+..    ..+.++..+++|+.++.++.+.+.+    .+.++|++||...+
T Consensus        81 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~  142 (253)
T d1hxha_          81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSW  142 (253)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGT
T ss_pred             CCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhh
Confidence            999999999765432    2234566899999999988877643    33489999996643

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=99.64  E-value=3.4e-16  Score=119.11  Aligned_cols=122  Identities=18%  Similarity=0.125  Sum_probs=92.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      ++||+++||||++.||+++++.|+++ |++|.+++|+.+..+.....+.. ..++..+.+|+++++.            .
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEE-GTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG   81 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            48999999999999999999999999 89999999976554443333322 3478899999998642            3


Q ss_pred             CcCEEEEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           97 EVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      ++|++|||||.....  .   ..+.+...+++|+.++..+.+++.    +.+. ++|++||...+.
T Consensus        82 ~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~  147 (260)
T d1zema1          82 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK  147 (260)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS
T ss_pred             CCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhcc
Confidence            699999999965431  2   223355679999999999888763    3343 999999977543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=7e-16  Score=116.22  Aligned_cols=118  Identities=19%  Similarity=0.124  Sum_probs=89.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc--------cCCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~d~v  101 (190)
                      ++||+++||||++.||+++++.|+++ |++|++.+|+.+...+...+   ..++..+.+|++|++        +.++|++
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~g~iDil   78 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHAS-GAKVVAVTRTNSDLVSLAKE---CPGIEPVCVDLGDWDATEKALGGIGPVDLL   78 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---STTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh---cCCCeEEEEeCCCHHHHHHHHHHcCCCeEE
Confidence            48999999999999999999999999 89999999865443332222   246788999999874        3469999


Q ss_pred             EEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----c-C-CeEEEEecceec
Q 029640          102 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----V-G-ARILLTSTSEVY  151 (190)
Q Consensus       102 i~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~-~-~~~i~vSS~~~~  151 (190)
                      |||||......    ..+.++..+++|+.++..+.+.+.+    . . .++|++||...+
T Consensus        79 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~  138 (242)
T d1cyda_          79 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAH  138 (242)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT
T ss_pred             EECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhcc
Confidence            99999765432    2233556799999999998876532    2 2 389999996533

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=99.63  E-value=1e-15  Score=116.52  Aligned_cols=120  Identities=17%  Similarity=0.099  Sum_probs=89.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh-hhhhh-cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-~~~~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++|+++||||++.||+++++.|+++ |++|++.+|+.+...+. ...+. ...++..+++|+++++.            
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~-G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATE-KAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999 89999999975433222 22222 23578889999998742            


Q ss_pred             CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHH----HcCC--eEEEEeccee
Q 029640           96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA--RILLTSTSEV  150 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~--~~i~vSS~~~  150 (190)
                      .++|++|||||...+...    .+.+...+++|+.++.++.+.+.    +.+.  .+|++||...
T Consensus        84 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~  148 (261)
T d1geea_          84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHE  148 (261)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGG
T ss_pred             CCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchh
Confidence            369999999997654322    23455679999999998877663    3332  5888998653

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.5e-15  Score=114.48  Aligned_cols=120  Identities=14%  Similarity=0.070  Sum_probs=92.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEeccccccc------------cC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~------------~~   96 (190)
                      +.|++++||||++.||+++++.|+++ |.+|++.+|+.+...+...++. ...++..+.+|++|.+            +.
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~-G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            58999999999999999999999999 8999999997665544443332 2357899999999974            23


Q ss_pred             CcCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEeccee
Q 029640           97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEV  150 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~  150 (190)
                      ++|++|||||........    +.++..+++|+.++.++.+.+    .+.+. ++|++||...
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~  146 (244)
T d1yb1a_          84 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAG  146 (244)
T ss_dssp             CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-
T ss_pred             CCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchh
Confidence            599999999977654322    234567999999999887765    34454 8999999664

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.63  E-value=1e-15  Score=116.29  Aligned_cols=119  Identities=18%  Similarity=0.111  Sum_probs=91.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------cCCc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LIEV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~~~~   98 (190)
                      ||.++||||++.||+++++.|+++ |++|++.+|+.+...+...++.. ..++.++++|++|++            +.++
T Consensus         2 gKValITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i   80 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKE-GLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV   80 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            688899999999999999999999 89999999976555444444432 347899999999874            2369


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH------cC-CeEEEEecceec
Q 029640           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR------VG-ARILLTSTSEVY  151 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~------~~-~~~i~vSS~~~~  151 (190)
                      |++|||||......    ..+.++..+++|+.++.++.+++.+      .+ .++|++||...+
T Consensus        81 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~  144 (257)
T d2rhca1          81 DVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGK  144 (257)
T ss_dssp             SEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGT
T ss_pred             CEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccc
Confidence            99999999765432    2234556899999999999988753      23 379999986643

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=99.63  E-value=8.8e-16  Score=116.69  Aligned_cols=124  Identities=15%  Similarity=0.088  Sum_probs=94.6

Q ss_pred             cccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc-----------
Q 029640           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        28 ~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~-----------   95 (190)
                      |.+++|+++||||++.||+++++.|+++ |++|++++|+.+..++....+.. ...+.++.+|+++.+.           
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~-G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGL-GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHH
Confidence            4468999999999999999999999999 89999999976554444444332 3578889999998642           


Q ss_pred             --CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           96 --IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 --~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                        ..+|+||||||......    ..+.+...+++|+.++.++.+++.    +.+. ++|++||.....
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~  148 (258)
T d1ae1a_          81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS  148 (258)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS
T ss_pred             hCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccccccc
Confidence              24899999999766432    223456679999999999887764    2333 899999977543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.5e-16  Score=117.33  Aligned_cols=118  Identities=20%  Similarity=0.206  Sum_probs=89.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ++||+++||||++.||+++++.|+++ |++|++.+|+.+.......+   ..+..++.+|++|++.            .+
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNS-GARVVICDKDESGGRALEQE---LPGAVFILCDVTQEDDVKTLVSETIRRFGR   79 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---CTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh---cCCCeEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            38999999999999999999999999 89999999865433322222   2467889999998642            36


Q ss_pred             cCEEEEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHHH----HcCCeEEEEecceec
Q 029640           98 VDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~vSS~~~~  151 (190)
                      +|++|||||.....  .   ..+.++..+++|+.++.++.+++.    +.+.++|++||...+
T Consensus        80 iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~  142 (250)
T d1ydea1          80 LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGA  142 (250)
T ss_dssp             CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHH
T ss_pred             CCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCccccccccc
Confidence            99999999965422  1   123355679999999998887663    334599999997754

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=7.5e-15  Score=110.77  Aligned_cols=118  Identities=17%  Similarity=0.143  Sum_probs=88.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHHh--cCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------------
Q 029640           32 NMRILVTGGAGFIGSHLVDKLME--NEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------------   95 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~--~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------------   95 (190)
                      ||+|+||||++.||+++++.|++  +.|++|++..|+.+.............++.++.+|++|++.              
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~   81 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKD   81 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGG
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhc
Confidence            68999999999999999999985  23789999999887765443323345689999999998642              


Q ss_pred             CCcCEEEEccCCCCCc--ccccC---chhHHHHHHHHHHHHHHHHHH----c-----------C-CeEEEEecce
Q 029640           96 IEVDQIYHLACPASPI--FYKYN---PVKTIKTNVIGTLNMLGLAKR----V-----------G-ARILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~--~~~~~---~~~~~~~n~~~~~~l~~~~~~----~-----------~-~~~i~vSS~~  149 (190)
                      .++|++|||||.....  ..+.+   .+..+++|+.++..+.+.+..    .           + .++|++||..
T Consensus        82 ~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~  156 (248)
T d1snya_          82 QGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL  156 (248)
T ss_dssp             GCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGG
T ss_pred             CCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccc
Confidence            3599999999965532  11222   445799999999988776632    1           2 3799999854

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=99.62  E-value=5.2e-15  Score=112.10  Aligned_cols=118  Identities=18%  Similarity=0.130  Sum_probs=89.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh--hhhhhcCCceEEEecccccc-c------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN--LRKWIGHPRFELIRHDVTEP-L------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~--~~~~~~~~~~~~~~~D~~~~-~------------   94 (190)
                      +++|+|+||||++.||+++++.|+++ |.+|+++.|+.+.....  +.......++.++.+|+... .            
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~-G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKR-NLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-CCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence            58999999999999999999999999 88888887766553322  22233456888999999742 1            


Q ss_pred             cCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHH----c---C-CeEEEEecceecC
Q 029640           95 LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR----V---G-ARILLTSTSEVYG  152 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~---~-~~~i~vSS~~~~~  152 (190)
                      +.++|+||||||...    ++.++..+++|+.++.++.+++.+    .   + .++|++||...+.
T Consensus        82 ~g~iDilvnnAG~~~----~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~  143 (254)
T d1sbya1          82 LKTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN  143 (254)
T ss_dssp             HSCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS
T ss_pred             cCCCCEEEeCCCCCC----HHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhcc
Confidence            236999999999653    457788999999999999887632    1   1 3799999966543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=99.62  E-value=2.4e-15  Score=114.32  Aligned_cols=121  Identities=18%  Similarity=0.099  Sum_probs=91.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEeccccccc------------c
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL------------L   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~------------~   95 (190)
                      +++|+++||||++.||+++++.|+++ |++|++++|+.+...+...++..  ..++..+++|+++++            +
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAA-GANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL   85 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHT-TEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            58999999999999999999999999 89999999987766554444422  357889999999874            2


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-C-eEEEEecceec
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~vSS~~~~  151 (190)
                      .++|++|||||......    +.+.+++.+++|+.++.++.+.+.+    .+ . +++.+||...+
T Consensus        86 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~  151 (260)
T d1h5qa_          86 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQ  151 (260)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT
T ss_pred             CCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccc
Confidence            36999999999665432    2234556799999999988776632    22 3 56666664433

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.7e-15  Score=112.94  Aligned_cols=116  Identities=20%  Similarity=0.149  Sum_probs=90.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc------------
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~------------   95 (190)
                      .||+++||||++.||+++++.|+++ |++|.+++|+.+........+.   ...++.++.+|+++++.            
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLK-GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            6899999999999999999999999 8999999997665544444332   23578999999999642            


Q ss_pred             CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHH----HcC----CeEEEEecceec
Q 029640           96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK----RVG----ARILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~----~~~----~~~i~vSS~~~~  151 (190)
                      .++|++|||||....    .++++.+++|+.++.++.+++.    +.+    .++|++||...+
T Consensus        81 G~iDilVnnAg~~~~----~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~  140 (254)
T d2gdza1          81 GRLDILVNNAGVNNE----KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGL  140 (254)
T ss_dssp             SCCCEEEECCCCCCS----SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT
T ss_pred             CCcCeeccccccccc----ccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhc
Confidence            369999999997543    4677889999999887776663    221    269999997643

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.61  E-value=1.1e-15  Score=116.48  Aligned_cols=118  Identities=14%  Similarity=0.078  Sum_probs=85.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc----CCceEEEecccccccc----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~----------   95 (190)
                      +++|.++||||++.||+++++.|+++ |++|.+.+|+.+..++...++..    ..++.++.+|++++..          
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFARE-GAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence            48899999999999999999999999 89999999976554444433322    2468999999998642          


Q ss_pred             --CCcCEEEEccCCCCCcc--------cccCchhHHHHHHHHHHHHHHHHH----HcCCeEEEEecc
Q 029640           96 --IEVDQIYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTS  148 (190)
Q Consensus        96 --~~~d~vi~~ag~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~vSS~  148 (190)
                        .++|++|||||...+..        +.+.++..+++|+.++.++.+++.    +.+.++|+++|.
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~  148 (264)
T d1spxa_          82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSI  148 (264)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCT
T ss_pred             HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeee
Confidence              36999999999653211        123355679999999998887764    334567766664

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.61  E-value=2.3e-15  Score=114.16  Aligned_cols=118  Identities=20%  Similarity=0.104  Sum_probs=88.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------cCCcC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LIEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~~~~d   99 (190)
                      |.++||||++.||+++++.|+++ |++|.+.+|+.+.......++.. ..++..+++|+++++            +.++|
T Consensus         2 KValITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKD-GFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   80 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEEcCCccHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence            45699999999999999999999 89999999976554444333322 357888999999864            34699


Q ss_pred             EEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC--CeEEEEecceec
Q 029640          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVY  151 (190)
Q Consensus       100 ~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~i~vSS~~~~  151 (190)
                      ++|||||......    +.+.++..+++|+.++.++.+++.    +.+  .++|++||...+
T Consensus        81 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~  142 (255)
T d1gega_          81 VIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGH  142 (255)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT
T ss_pred             EEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhc
Confidence            9999999655422    223355679999999999887753    333  379999986643

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.8e-15  Score=117.22  Aligned_cols=118  Identities=17%  Similarity=0.125  Sum_probs=89.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh------cCCceEEEecccccccc--------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI------GHPRFELIRHDVTEPLL--------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~--------   95 (190)
                      ++||+++||||++.||+++++.|+++ |++|++.+|+.+.......++.      ...++..+.+|+++++.        
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~-Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLEL-GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            58999999999999999999999999 8999999997655444333332      13578999999998742        


Q ss_pred             ----CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHHc----CC-eEEEEecc
Q 029640           96 ----IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTS  148 (190)
Q Consensus        96 ----~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~vSS~  148 (190)
                          .++|++|||||.......    .+.++..+++|+.++..+.+++.+.    +. ++|++|+.
T Consensus        89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~  154 (297)
T d1yxma1          89 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVP  154 (297)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCC
T ss_pred             HHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccccccccccccc
Confidence                369999999986553222    2345567999999999998877432    23 67777653

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=99.60  E-value=3.1e-15  Score=114.72  Aligned_cols=118  Identities=18%  Similarity=0.129  Sum_probs=89.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~   97 (190)
                      ++||+++||||++.||+++++.|+++ |++|++++|+.+...+...++  ..++..+.+|+.+++            +.+
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   79 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAE-GAKVAVLDKSAERLAELETDH--GDNVLGIVGDVRSLEDQKQAASRCVARFGK   79 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHc--CCCeeEEecccccHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999 899999999755444333333  247889999999864            236


Q ss_pred             cCEEEEccCCCCCccc-----cc----CchhHHHHHHHHHHHHHHHH----HHcCCeEEEEeccee
Q 029640           98 VDQIYHLACPASPIFY-----KY----NPVKTIKTNVIGTLNMLGLA----KRVGARILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~-----~~----~~~~~~~~n~~~~~~l~~~~----~~~~~~~i~vSS~~~  150 (190)
                      +|++|||||.......     .+    .++..+++|+.++.++.+++    ++.+.++|+++|...
T Consensus        80 idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~  145 (276)
T d1bdba_          80 IDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAG  145 (276)
T ss_dssp             CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGG
T ss_pred             cccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechh
Confidence            9999999996543211     11    24567999999999887776    344458898888653

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.60  E-value=7.2e-15  Score=112.38  Aligned_cols=117  Identities=19%  Similarity=0.152  Sum_probs=87.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc----CCceEEEecccccccc----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~----------   95 (190)
                      +++|+++||||++.||+++++.|+++ |++|++.+|+.+..+....++..    ..++..+++|+++++.          
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~-Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQE-GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            48899999999999999999999999 89999999976554443333322    2468999999998642          


Q ss_pred             --CCcCEEEEccCCCCCccc-----cc---CchhHHHHHHHHHHHHHHHHHH----cCCeEEEEec
Q 029640           96 --IEVDQIYHLACPASPIFY-----KY---NPVKTIKTNVIGTLNMLGLAKR----VGARILLTST  147 (190)
Q Consensus        96 --~~~d~vi~~ag~~~~~~~-----~~---~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS  147 (190)
                        .++|++|||||...+...     +.   .+...+++|+.++.++.+++..    .+..+|+++|
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S  147 (272)
T d1xkqa_          82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSS  147 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccc
Confidence              369999999997654221     11   2456789999999998887643    3346666665

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=6.4e-15  Score=110.31  Aligned_cols=112  Identities=19%  Similarity=0.212  Sum_probs=85.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc------ccCCcCEEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP------LLIEVDQIYH  103 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~------~~~~~d~vi~  103 (190)
                      +++|+++||||++.||+++++.|+++ |++|.+.+|+.+    .+.+    ....++.+|+.+.      .+.++|++||
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~-Ga~V~~~~r~~~----~l~~----~~~~~~~~Dv~~~~~~~~~~~g~iD~lVn   72 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQE-GAEVTICARNEE----LLKR----SGHRYVVCDLRKDLDLLFEKVKEVDILVL   72 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHH----HHHH----TCSEEEECCTTTCHHHHHHHSCCCSEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHH----HHHh----cCCcEEEcchHHHHHHHHHHhCCCcEEEe
Confidence            47899999999999999999999999 899999998532    2322    2456788999874      2457999999


Q ss_pred             ccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEeccee
Q 029640          104 LACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEV  150 (190)
Q Consensus       104 ~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~  150 (190)
                      |||.......    .+.++..+++|+.++..+.+.+    ++.+. ++|++||...
T Consensus        73 nAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~  128 (234)
T d1o5ia_          73 NAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSV  128 (234)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGG
T ss_pred             cccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccc
Confidence            9996554322    2335567899999998887766    33444 8999998654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1e-14  Score=111.28  Aligned_cols=129  Identities=13%  Similarity=0.132  Sum_probs=94.5

Q ss_pred             CchhhcccccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEeccccccc----
Q 029640           21 SPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPL----   94 (190)
Q Consensus        21 ~~~~~~~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~----   94 (190)
                      .+.++.+.+++||+++||||++.||+++++.|+++ |++|++++|+.+.......++.  ....+..+.+|+.+..    
T Consensus         3 ~~~~f~~~~L~GK~alITGassGIG~aiA~~la~~-G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~   81 (269)
T d1xu9a_           3 LNEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKM-GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQ   81 (269)
T ss_dssp             CSSCCCGGGGTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHH
T ss_pred             CCccCCccccCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHH
Confidence            34455556689999999999999999999999999 8999999997655544433332  2356777888888753    


Q ss_pred             --------cCCcCEEEEccCCCCCccc-c---cCchhHHHHHHHHHHHHHHHHH----HcCCeEEEEeccee
Q 029640           95 --------LIEVDQIYHLACPASPIFY-K---YNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEV  150 (190)
Q Consensus        95 --------~~~~d~vi~~ag~~~~~~~-~---~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~vSS~~~  150 (190)
                              ...+|+++||||....... +   +.....+++|+.++..+.+.+.    +.+.++|++||...
T Consensus        82 ~~~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~  153 (269)
T d1xu9a_          82 FVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAG  153 (269)
T ss_dssp             HHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGG
T ss_pred             HHHHHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchh
Confidence                    2359999999986554322 2   2344578999999988877663    33458999998664

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.4e-14  Score=106.36  Aligned_cols=115  Identities=17%  Similarity=0.088  Sum_probs=88.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc--------cCCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~d~v  101 (190)
                      +++|+++||||++.||+++++.|+++ |++|++.+|++    +.+.++.....+....+|+.+..        ..++|++
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~-G~~Vi~~~r~~----~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~l   78 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFARE-GAKVIATDINE----SKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVL   78 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCH----HHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCH----HHHHHHHhccCCceeeeeccccccccccccccccceeE
Confidence            48899999999999999999999999 89999999954    33444444567788888887653        2469999


Q ss_pred             EEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecce
Q 029640          102 YHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSE  149 (190)
Q Consensus       102 i~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~  149 (190)
                      ||+||...+...    .+.+...+++|+.++..+.+.+..    .+. ++|++||..
T Consensus        79 Vn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~  135 (245)
T d2ag5a1          79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVA  135 (245)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSB
T ss_pred             EecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechh
Confidence            999997665322    233556799999999999877643    333 899999854

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.57  E-value=6.6e-15  Score=112.72  Aligned_cols=119  Identities=16%  Similarity=0.095  Sum_probs=88.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc----CCceEEEecccccccc----------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~----------   95 (190)
                      ++||+++||||++.||+++++.|+++ |++|.+.+|+.+..+....++..    ..++..+.+|++++..          
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKE-GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999 89999999976544443333322    2478999999999742          


Q ss_pred             --CCcCEEEEccCCCCCcc--c----ccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecce
Q 029640           96 --IEVDQIYHLACPASPIF--Y----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSE  149 (190)
Q Consensus        96 --~~~d~vi~~ag~~~~~~--~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~  149 (190)
                        .++|++|||||......  .    .+.++..+++|+.++..+.+++.+    .+. +++++||..
T Consensus        81 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~  147 (274)
T d1xhla_          81 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVA  147 (274)
T ss_dssp             HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             HcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhh
Confidence              36999999998643221  1    123556799999999988877743    333 677777644

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.57  E-value=1e-14  Score=109.57  Aligned_cols=118  Identities=14%  Similarity=0.086  Sum_probs=87.2

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCe-------EEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc-----------
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNE-------VIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL-----------   94 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~-------v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~-----------   94 (190)
                      .|+||||++.||+++++.|+++ |++       |.+.+|+.+.......++.. ..++.++.+|++|++           
T Consensus         3 VvlITGas~GIG~aia~~la~~-G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARA-ARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHH-TTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHh-CccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999 665       78888865544443333322 357888999999974           


Q ss_pred             -cCCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029640           95 -LIEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        95 -~~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                       +.++|++|||||.......    .+.++..+++|+.++..+.+.+.    +++. ++|++||...+.
T Consensus        82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~  149 (240)
T d2bd0a1          82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK  149 (240)
T ss_dssp             HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred             HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcC
Confidence             2369999999997654322    23455679999999998877663    4444 999999976443

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.56  E-value=2.3e-14  Score=108.20  Aligned_cols=103  Identities=15%  Similarity=0.105  Sum_probs=76.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------------
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------------   95 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------------   95 (190)
                      +.|+|+||||++.||+++++.|++++. ..|++..|+.+...+. .+. ...++.++.+|+++.+.              
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l-~~~-~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~   79 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATEL-KSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS   79 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHH-HTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHH-HHh-hCCceEEEEEecCCHHHHHHHHHHHHHHhCC
Confidence            458999999999999999999999932 3688888876554432 222 24579999999998632              


Q ss_pred             CCcCEEEEccCCCCCcc--c---ccCchhHHHHHHHHHHHHHHHH
Q 029640           96 IEVDQIYHLACPASPIF--Y---KYNPVKTIKTNVIGTLNMLGLA  135 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~--~---~~~~~~~~~~n~~~~~~l~~~~  135 (190)
                      .++|++|||||...+..  .   .+..++.+++|+.++.++.+.+
T Consensus        80 ~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~  124 (250)
T d1yo6a1          80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKL  124 (250)
T ss_dssp             GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHT
T ss_pred             CCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHH
Confidence            13999999999754321  1   1234568999999999887766

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.56  E-value=8.5e-15  Score=110.28  Aligned_cols=118  Identities=16%  Similarity=0.070  Sum_probs=86.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhh-hhh-cCCceEEEeccccccc------------cCCc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR-KWI-GHPRFELIRHDVTEPL------------LIEV   98 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~-~~~-~~~~~~~~~~D~~~~~------------~~~~   98 (190)
                      ..++||||++.||+++++.|+++ |++|.+.+++.+...+.+. .+. ...++.++++|++|++            +.++
T Consensus         2 pV~lITGas~GIG~a~a~~la~~-Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   80 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKA-GCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999 8998887554333222222 221 1357889999999874            2369


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029640           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                      |++|||||......    ..+.++..+++|+.++.++.+.+.    +++. ++|++||...+
T Consensus        81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~  142 (244)
T d1edoa_          81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGL  142 (244)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHH
T ss_pred             CccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhc
Confidence            99999999765432    223455689999999998877663    3344 99999997754

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3e-15  Score=114.65  Aligned_cols=119  Identities=19%  Similarity=0.163  Sum_probs=91.4

Q ss_pred             CCEE-EEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CC
Q 029640           32 NMRI-LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        32 ~~~v-lItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ||+| +||||++.||+++++.|+++++..|++..|+.+..+....++.. ..++.++++|+.|.+.            .+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~   81 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   81 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence            5665 89999999999999999987678999999987665554444432 3578899999998642            36


Q ss_pred             cCEEEEccCCCCCccccc----CchhHHHHHHHHHHHHHHHHHHc---CCeEEEEeccee
Q 029640           98 VDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~  150 (190)
                      +|++|||||........+    ..+..+++|+.++..+.+.+...   ..++|++||...
T Consensus        82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~  141 (275)
T d1wmaa1          82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMS  141 (275)
T ss_dssp             EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHH
T ss_pred             cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccce
Confidence            999999999765433222    34457999999999999988653   138999999653

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.54  E-value=1e-14  Score=110.47  Aligned_cols=123  Identities=17%  Similarity=0.070  Sum_probs=88.7

Q ss_pred             cccCCCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----------
Q 029640           28 FFQSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----------   94 (190)
Q Consensus        28 ~~~~~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----------   94 (190)
                      ..+++|+++||||+|  .||+++++.|+++ |++|.+.+|+.+.................+++|+.+++           
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~-Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   82 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEA-GAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKE   82 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHC-CCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHH
Confidence            346899999999987  7999999999999 89999888864433322222223446788999999864           


Q ss_pred             -cCCcCEEEEccCCCCCcc--------cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceec
Q 029640           95 -LIEVDQIYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVY  151 (190)
Q Consensus        95 -~~~~d~vi~~ag~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~  151 (190)
                       +.++|++|||||......        ..+++...+++|+.++..+.+.+...   +.++|++||....
T Consensus        83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~  151 (256)
T d1ulua_          83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE  151 (256)
T ss_dssp             HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT
T ss_pred             hcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhc
Confidence             236999999998643211        11223456899999999998887543   2379999986643

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=99.54  E-value=2e-14  Score=108.05  Aligned_cols=115  Identities=21%  Similarity=0.177  Sum_probs=87.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++|+++||||++.||+++++.|+++ |++|++.+|+.+...+...++  ..++.++++|+++++.            .+
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~   79 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFARE-GASLVAVDREERLLAEAVAAL--EAEAIAVVADVSDPKAVEAVFAEALEEFGR   79 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTC--CSSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHc--CCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            48999999999999999999999999 899999999765554444443  3578889999998742            36


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      +|++|||||......    ..+.+.+.+++|+.++..+.+++...-.  +.|+++|
T Consensus        80 iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~s  135 (241)
T d2a4ka1          80 LHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTG  135 (241)
T ss_dssp             CCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             ccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecc
Confidence            999999998655422    1233556799999999999998866542  4444444

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.51  E-value=1.9e-14  Score=109.23  Aligned_cols=118  Identities=17%  Similarity=0.054  Sum_probs=86.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~------------   95 (190)
                      +.||+++||||++.||+++++.|+++ |++|++..++.....+.+....  ...++..+.+|+++++.            
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~-G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRR-GASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence            58999999999999999999999999 8998887665444333322222  13478899999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHcC---CeEEEEecc
Q 029640           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTS  148 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~vSS~  148 (190)
                      .++|++|||||......    ..+.++..+++|+.++.++++.+.++=   .++++++|.
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~  142 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSI  142 (259)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccc
Confidence            35999999999765432    223455679999999999988886532   256666654

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.51  E-value=2.5e-13  Score=102.70  Aligned_cols=120  Identities=18%  Similarity=0.232  Sum_probs=89.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCCh---hhhhhhh-cCCceEEEecccccccc----------
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSK---DNLRKWI-GHPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~---~~~~~~~-~~~~~~~~~~D~~~~~~----------   95 (190)
                      ++.+++||||+|.||+++++.|+++ |. +|+++.|+....+   ..+.++. ...++.++.+|++|...          
T Consensus         8 p~gt~lVTGgs~GIG~a~a~~la~~-Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~   86 (259)
T d2fr1a1           8 PTGTVLVTGGTGGVGGQIARWLARR-GAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD   86 (259)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHH-TCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             CcCEEEEECCCcHHHHHHHHHHHHC-CCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccccc
Confidence            5679999999999999999999999 65 6888888643322   2233332 23578999999998632          


Q ss_pred             -CCcCEEEEccCCCCCccccc----CchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceec
Q 029640           96 -IEVDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~  151 (190)
                       ..+|.|||++|........+    .....+.+|+.++.++.+++...+. ++|++||...+
T Consensus        87 ~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~  148 (259)
T d2fr1a1          87 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASA  148 (259)
T ss_dssp             TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHH
T ss_pred             cccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhc
Confidence             25999999999766433222    2345689999999999998888775 89999997744

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.50  E-value=1e-13  Score=105.82  Aligned_cols=119  Identities=18%  Similarity=0.075  Sum_probs=89.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhh-h-hcCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-W-IGHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~-~-~~~~~~~~~~~D~~~~~~------------   95 (190)
                      ++||+++||||++.||+++++.|+++ |++|++++|+.....+.+.. + .....+.++++|+.+++.            
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~-Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~   94 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRR-GCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF   94 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence            68999999999999999999999999 89999988765433222222 2 123578899999998642            


Q ss_pred             CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029640           96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      .++|++||++|.......    .+.+...+++|+.++..+.+++...   ..++++++|..
T Consensus        95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~  155 (272)
T d1g0oa_          95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSIT  155 (272)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGG
T ss_pred             CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccc
Confidence            369999999986654322    2335567899999999999888653   23788887754

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=2.7e-14  Score=110.64  Aligned_cols=119  Identities=16%  Similarity=0.068  Sum_probs=84.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-----hhhh----hhhhcCCceEEEeccccccc------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-----KDNL----RKWIGHPRFELIRHDVTEPL------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-----~~~~----~~~~~~~~~~~~~~D~~~~~------   94 (190)
                      ++||+++||||++.||+++++.|+++ |++|++.+|+.+..     ....    .++..  ......+|+.+.+      
T Consensus         5 l~gKvalITGas~GIG~aiA~~la~~-Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~v   81 (302)
T d1gz6a_           5 FDGRVVLVTGAGGGLGRAYALAFAER-GALVVVNDLGGDFKGVGKGSSAADKVVEEIRR--RGGKAVANYDSVEAGEKLV   81 (302)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECCCBCTTSCBCCSHHHHHHHHHHHH--TTCEEEEECCCGGGHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCchhhhhhhhHHHHHHHHHHHhh--cccccccccchHHHHHHHH
Confidence            57999999999999999999999999 89999998765422     1111    11111  2233445666542      


Q ss_pred             ------cCCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           95 ------LIEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        95 ------~~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                            +.++|++|||||...+...    .+.++..+++|+.++.++.+++    ++++. +||++||...+
T Consensus        82 ~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~  153 (302)
T d1gz6a_          82 KTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGI  153 (302)
T ss_dssp             HHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred             HHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhc
Confidence                  3469999999997665322    2335567999999999988776    34454 99999997743

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=1.1e-13  Score=104.98  Aligned_cols=122  Identities=10%  Similarity=-0.009  Sum_probs=89.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhc--CCCeEEEEcCCCCCChhhhhhh---hcCCceEEEecccccccc---------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPLL---------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~--~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~---------   95 (190)
                      +.+|.++||||++.||+++++.|++.  .|++|++++|+.+..+....++   ....++.++.+|+++++.         
T Consensus         4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~   83 (259)
T d1oaaa_           4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR   83 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            57899999999999999999999872  3899999999765544433333   234578999999998631         


Q ss_pred             -------CCcCEEEEccCCCCCc----ccc---cCchhHHHHHHHHHHHHHHHHHHc----C---CeEEEEecceec
Q 029640           96 -------IEVDQIYHLACPASPI----FYK---YNPVKTIKTNVIGTLNMLGLAKRV----G---ARILLTSTSEVY  151 (190)
Q Consensus        96 -------~~~d~vi~~ag~~~~~----~~~---~~~~~~~~~n~~~~~~l~~~~~~~----~---~~~i~vSS~~~~  151 (190)
                             ..+|++|||||...+.    ..+   +.+...+++|+.++..+.+.+.+.    +   .++|++||...+
T Consensus        84 ~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~  160 (259)
T d1oaaa_          84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL  160 (259)
T ss_dssp             HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT
T ss_pred             HhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccccccc
Confidence                   2478999999865421    112   234567999999999999888542    2   279999996543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=99.45  E-value=4.2e-13  Score=102.88  Aligned_cols=109  Identities=18%  Similarity=0.266  Sum_probs=79.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh-h--hhhcCCceEEEeccccccc-----cCCcCEEEE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-R--KWIGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~-~--~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~  103 (190)
                      .+||+||||||+||+++++.|+++ |++|+++.|+........ .  ......+++++.+|+.|..     +.+.+++|+
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISL-GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence            467999999999999999999999 899999999765443221 1  1123467899999999864     357899999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecC
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG  152 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~  152 (190)
                      +++....           ..|.....++++++++.+. +++++||.+++.
T Consensus        82 ~~~~~~~-----------~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~  120 (312)
T d1qyda_          82 ALAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLPSEFGMDP  120 (312)
T ss_dssp             CCCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEECSCCSSCT
T ss_pred             hhhhccc-----------ccchhhhhHHHHHHHHhcCCcEEEEeeccccC
Confidence            9864332           1234445678888888765 888888865544

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=99.44  E-value=9e-13  Score=101.41  Aligned_cols=119  Identities=13%  Similarity=0.025  Sum_probs=85.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc------------
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~------------   95 (190)
                      ++||+++||||+|.||+++++.|+++ |++|++.+|+.+.......++.  ....+..+.+|+.+...            
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~-Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~  101 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSL-GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA  101 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhc
Confidence            58999999999999999999999999 8999999997665554444442  23578889999998642            


Q ss_pred             CCcCEEEEccCCCCCccccc----CchhHHHHHHHHHHHHHHHHH----H-cCC-eEEEEecce
Q 029640           96 IEVDQIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLAK----R-VGA-RILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~~----~-~~~-~~i~vSS~~  149 (190)
                      .++|++|||||.........    .....+.+|......+...+.    . ... .++.+||..
T Consensus       102 g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~  165 (294)
T d1w6ua_         102 GHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIY  165 (294)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTH
T ss_pred             cccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccch
Confidence            36999999999665432222    244457778877776655442    1 223 566666644

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=5.6e-13  Score=99.63  Aligned_cols=111  Identities=19%  Similarity=0.094  Sum_probs=77.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc--------------cC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------------LI   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--------------~~   96 (190)
                      ++|+|+||||+|.||+++++.|+++ |++|.++++.......         ......+|..+..              ..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~-G~~V~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRAR-NWWVASIDVVENEEAS---------ASVIVKMTDSFTEQADQVTAEVGKLLGDQ   70 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSCCTTSS---------EEEECCCCSCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCcccccc---------ccceeecccCcHHHHHHHHHHHHHHhCCC
Confidence            4799999999999999999999999 8999998876543221         2233334443221              12


Q ss_pred             CcCEEEEccCCCCCc-c-c---ccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceec
Q 029640           97 EVDQIYHLACPASPI-F-Y---KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~-~-~---~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~  151 (190)
                      ++|++|||||..... . .   .+.++..+++|+.++.++.+++.++   +.++|++||...+
T Consensus        71 ~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~  133 (236)
T d1dhra_          71 KVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL  133 (236)
T ss_dssp             CEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG
T ss_pred             CceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHc
Confidence            589999999853321 1 1   2234557899999999988887653   2389999996643

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.43  E-value=8.4e-13  Score=98.53  Aligned_cols=111  Identities=23%  Similarity=0.222  Sum_probs=78.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc--------------ccCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP--------------LLIE   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~--------------~~~~   97 (190)
                      ..||+||||++.||+++++.|+++ |++|++++|+......         ....+.+|..+.              ...+
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~-G~~V~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   71 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKN-GYTVLNIDLSANDQAD---------SNILVDGNKNWTEQEQSILEQTASSLQGSQ   71 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHT-TEEEEEEESSCCTTSS---------EEEECCTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCchhccc---------ccceeccccCchhHHHHHHHHHHHHhcCCC
Confidence            367999999999999999999999 8999999997654321         223333444432              1235


Q ss_pred             cCEEEEccCCCCCc--ccc---cCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecC
Q 029640           98 VDQIYHLACPASPI--FYK---YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~--~~~---~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~  152 (190)
                      +|+||||||.....  ..+   +..+..+++|+.++.++.+++..+   +.++|++||...+.
T Consensus        72 iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~  134 (235)
T d1ooea_          72 VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG  134 (235)
T ss_dssp             EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS
T ss_pred             eeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcC
Confidence            99999999954321  111   224456899999999988888653   23899999966443

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1e-12  Score=100.90  Aligned_cols=118  Identities=23%  Similarity=0.209  Sum_probs=82.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEE---EcCCCCCChhh---hhhh-hcCCceEEEecccccccc----------
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIV---VDNYFTGSKDN---LRKW-IGHPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~---~~r~~~~~~~~---~~~~-~~~~~~~~~~~D~~~~~~----------   95 (190)
                      |.|+||||++.||+++++.|+++ |.+|+.   ..|+.+.....   ...+ ....++..+.+|++|.+.          
T Consensus         3 kVvlITGassGIG~a~A~~la~~-Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~   81 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRLASD-PSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE   81 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTC-TTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred             CEEEEccCCCHHHHHHHHHHHHC-CCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence            55789999999999999999999 665443   34433322211   1111 124589999999998632          


Q ss_pred             CCcCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029640           96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      ..+|++|||||.......+    +.+...+++|+.++.++.+++    ++++. ++|++||...+
T Consensus        82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~  146 (285)
T d1jtva_          82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGL  146 (285)
T ss_dssp             SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGT
T ss_pred             cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhc
Confidence            3599999999976653322    334567999999999888766    44454 99999997643

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.41  E-value=1.5e-13  Score=103.74  Aligned_cols=112  Identities=14%  Similarity=0.124  Sum_probs=80.1

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCCcCEE
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVDQI  101 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~d~v  101 (190)
                      +++||||++.||+++++.|+++ |++|.+.+|+.+..++ +....    ..+.++|+.++.            +.++|++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~-Ga~V~i~~r~~~~~~~-~~~~~----~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiL   75 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEA-GHTVACHDESFKQKDE-LEAFA----ETYPQLKPMSEQEPAELIEAVTSAYGQVDVL   75 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHT-TCEEEECCGGGGSHHH-HHHHH----HHCTTSEECCCCSHHHHHHHHHHHHSCCCEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHH-HHhhh----CcEEEeccCCHHHHHHHHHHHHHHcCCCCEE
Confidence            6899999999999999999999 8999999987655432 22221    123456776653            2369999


Q ss_pred             EEccCCCCCc--cc---ccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceec
Q 029640          102 YHLACPASPI--FY---KYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVY  151 (190)
Q Consensus       102 i~~ag~~~~~--~~---~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~  151 (190)
                      |||||.....  ..   .++++..+++|+.++.++.+++    ++.+ .++|++||...+
T Consensus        76 VnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~  135 (252)
T d1zmta1          76 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPF  135 (252)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTT
T ss_pred             EECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeecccccccc
Confidence            9999864321  11   2335567899999999888766    3334 499999996543

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.41  E-value=4e-13  Score=99.17  Aligned_cols=115  Identities=18%  Similarity=0.169  Sum_probs=83.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCe--EEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNE--VIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~--v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~  103 (190)
                      .+++||||||+|+||+++++.|+++ |++  |+.+.|+..    ....+  ..+++++.+|+.+..     +.++|+|||
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~-g~~v~v~~~~R~~~----~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~d~vi~   74 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEG-SDKFVAKGLVRSAQ----GKEKI--GGEADVFIGDITDADSINPAFQGIDALVI   74 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHT-TTTCEEEEEESCHH----HHHHT--TCCTTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHC-CCcEEEEEEcCCHH----HHHhc--cCCcEEEEeeeccccccccccccceeeEE
Confidence            4689999999999999999999999 654  666666432    22222  246788889998864     357999999


Q ss_pred             ccCCCCCccc-------------ccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecC
Q 029640          104 LACPASPIFY-------------KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG  152 (190)
Q Consensus       104 ~ag~~~~~~~-------------~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~  152 (190)
                      +|+.......             .........+|+.++.++++.+..... +..+.|+...+.
T Consensus        75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  137 (252)
T d2q46a1          75 LTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTN  137 (252)
T ss_dssp             CCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTC
T ss_pred             EEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCC
Confidence            9986543211             122345678899999999999988776 777777755443

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.5e-12  Score=97.72  Aligned_cols=120  Identities=19%  Similarity=0.226  Sum_probs=89.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~   97 (190)
                      ++||+++||||++.||+++++.|+++ |++|++++|+.+.......++  ........+|+.+..            ...
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQ-GASAVLLDLPNSGGEAQAKKL--GNNCVFAPADVTSEKDVQTALALAKGKFGR   79 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECTTSSHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHh--CCCccccccccccccccccccccccccccc
Confidence            58999999999999999999999999 899999999877766655554  346677778887642            234


Q ss_pred             cCEEEEccCCCCCcc-------c---ccCchhHHHHHHHHHHHHHHHHHHc----------CC-eEEEEecceecC
Q 029640           98 VDQIYHLACPASPIF-------Y---KYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~-------~---~~~~~~~~~~n~~~~~~l~~~~~~~----------~~-~~i~vSS~~~~~  152 (190)
                      .|.++++++......       .   .+.+...+++|+.++.++.+++...          +. ++|++||...+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~  155 (248)
T d2o23a1          80 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE  155 (248)
T ss_dssp             CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred             ccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc
Confidence            888888876433211       1   1234467899999999999887432          22 799999977543

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=99.32  E-value=1.5e-11  Score=96.27  Aligned_cols=106  Identities=14%  Similarity=0.142  Sum_probs=79.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------cCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~~d~vi~~  104 (190)
                      +.|+|+||||||+||+++++.|+++ |++|+++.|+.....  ...+....++..+++|+.|..      +.++|+++++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~-G~~V~~l~R~~~~~~--~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~   78 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAV-GHHVRAQVHSLKGLI--AEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFIN   78 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHT-TCCEEEEESCSCSHH--HHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhC-CCeEEEEECCcchhh--hhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEee
Confidence            4589999999999999999999999 899999999655432  223334468999999998853      3468888776


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceec
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY  151 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~  151 (190)
                      .....            ..++..+.++++++.+.++ ++++.||....
T Consensus        79 ~~~~~------------~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~  114 (350)
T d1xgka_          79 TTSQA------------GDEIAIGKDLADAAKRAGTIQHYIYSSMPDH  114 (350)
T ss_dssp             CCSTT------------SCHHHHHHHHHHHHHHHSCCSEEEEEECCCG
T ss_pred             ccccc------------chhhhhhhHHHHHHHHhCCCceEEEeecccc
Confidence            53211            1245567889999999986 88888886543

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.29  E-value=2.7e-13  Score=98.24  Aligned_cols=82  Identities=9%  Similarity=0.088  Sum_probs=63.8

Q ss_pred             ccccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEE
Q 029640           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQI  101 (190)
Q Consensus        27 ~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~v  101 (190)
                      ...+++|+++||||+|.||+.+++.|+++ |.+|+++.|+.+........+.....+....+|+.+..     ..++|+|
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDil   96 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFV   96 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHhh-ccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCee
Confidence            34468999999999999999999999999 89999999986665544444433345566778887753     4579999


Q ss_pred             EEccCCCC
Q 029640          102 YHLACPAS  109 (190)
Q Consensus       102 i~~ag~~~  109 (190)
                      |||||...
T Consensus        97 in~Ag~g~  104 (191)
T d1luaa1          97 FTAGAIGL  104 (191)
T ss_dssp             EECCCTTC
T ss_pred             eecCcccc
Confidence            99998643

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=3.8e-11  Score=90.33  Aligned_cols=119  Identities=16%  Similarity=-0.014  Sum_probs=82.3

Q ss_pred             cCCCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------c
Q 029640           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------L   95 (190)
Q Consensus        30 ~~~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~   95 (190)
                      +++|+++||||+|  .||+++++.|+++ |++|++.+|+++....................|+.+..            .
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~-G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHRE-GAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW   81 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHT-TCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcc
Confidence            5899999999998  7999999999999 89999999975543322222233445667777777642            2


Q ss_pred             CCcCEEEEccCCCCCcccc---------cCchhHHHHHHHHHHHHHHHHHHcC---CeEEEEecce
Q 029640           96 IEVDQIYHLACPASPIFYK---------YNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~~---------~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~vSS~~  149 (190)
                      ..+|++||+++........         +.....+.+|+.+...+.+.+...-   ..+|++||..
T Consensus        82 ~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~  147 (258)
T d1qsga_          82 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLG  147 (258)
T ss_dssp             SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGG
T ss_pred             cccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchh
Confidence            4599999999865432211         1122356777777777777776542   2588888855

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=99.26  E-value=9.3e-12  Score=94.57  Aligned_cols=103  Identities=17%  Similarity=0.288  Sum_probs=75.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh--hh--hhcCCceEEEeccccccc-----cCCcCEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL--RK--WIGHPRFELIRHDVTEPL-----LIEVDQI  101 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~--~~--~~~~~~~~~~~~D~~~~~-----~~~~d~v  101 (190)
                      +.+|||||||+||||+++++.|+++ |++|+++.|+........  ..  ......++++.+|+.+..     ..+.+.+
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~-G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v   80 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVV   80 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceee
Confidence            3588999999999999999999999 899999999765543221  11  122457888999998864     3468999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecce
Q 029640          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE  149 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~  149 (190)
                      ||+++...               ..++.++++++...+. ++++.|+..
T Consensus        81 i~~~~~~~---------------~~~~~~~~~a~~~~~~~~~~~~s~~~  114 (307)
T d1qyca_          81 ISTVGSLQ---------------IESQVNIIKAIKEVGTVKRFFPSEFG  114 (307)
T ss_dssp             EECCCGGG---------------SGGGHHHHHHHHHHCCCSEEECSCCS
T ss_pred             eecccccc---------------cchhhHHHHHHHHhccccceeeeccc
Confidence            99986332               2234567788888876 677777643

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=99.20  E-value=1.4e-10  Score=87.91  Aligned_cols=79  Identities=15%  Similarity=0.054  Sum_probs=60.4

Q ss_pred             cCCCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEeccccccc------------
Q 029640           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~------------   94 (190)
                      +++|+++||||+|  .||+++++.|+++ |++|++++|+.+ ..+...++. .........+|+.++.            
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~-Ga~V~i~~r~~~-~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   80 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQ-GATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD   80 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTT-TCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHH
Confidence            5899999999877  7999999999999 999999999743 333333332 2345667788998763            


Q ss_pred             cCCcCEEEEccCCCCC
Q 029640           95 LIEVDQIYHLACPASP  110 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~  110 (190)
                      +..+|++|||+|....
T Consensus        81 ~g~id~lV~nag~~~~   96 (274)
T d2pd4a1          81 LGSLDFIVHSVAFAPK   96 (274)
T ss_dssp             TSCEEEEEECCCCCCG
T ss_pred             cCCCCeEEeecccccc
Confidence            2369999999986543

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=99.11  E-value=7.3e-10  Score=84.09  Aligned_cols=103  Identities=17%  Similarity=0.088  Sum_probs=67.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecc-----------------ccc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHD-----------------VTE   92 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D-----------------~~~   92 (190)
                      -.++||||++.||+++++.|+++ |++|.+.+++.+...+.+....   .......+++|                 +++
T Consensus         3 pVAlITGas~GIG~aiA~~la~~-Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~   81 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAE-GYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTL   81 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCC
Confidence            45799999999999999999999 8999888776544333322221   12344555555                 443


Q ss_pred             cc------------cCCcCEEEEccCCCCCccccc----C--------------chhHHHHHHHHHHHHHHHHH
Q 029640           93 PL------------LIEVDQIYHLACPASPIFYKY----N--------------PVKTIKTNVIGTLNMLGLAK  136 (190)
Q Consensus        93 ~~------------~~~~d~vi~~ag~~~~~~~~~----~--------------~~~~~~~n~~~~~~l~~~~~  136 (190)
                      ..            +.++|++|||||...+....+    .              ....+.+|+.++..+.+.+.
T Consensus        82 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~  155 (284)
T d1e7wa_          82 FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFA  155 (284)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeecccc
Confidence            21            236999999999765422111    1              11257889999888887754

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=99.09  E-value=2.9e-10  Score=85.68  Aligned_cols=117  Identities=14%  Similarity=0.082  Sum_probs=76.0

Q ss_pred             ccCCCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------
Q 029640           29 FQSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------   94 (190)
Q Consensus        29 ~~~~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------   94 (190)
                      +++||+++|||++|  .||+++++.|+++ |++|++.+|+.....+.+.+.. ..+...+++|+.++.            
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~-Ga~Vil~~~~~~~~~~~~~~~~-~~~~~~~~~dv~~~~~~~~~~~~v~~~   80 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQ-GAQLVLTGFDRLRLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEA   80 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHT-TCEEEEEECSCHHHHHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHc-CCEEEEEeCChHHHHHHHHHHc-CCceeeEeeecccccccccccchhhhc
Confidence            46899999999654  6999999999999 8999999887654433333332 345678889999863            


Q ss_pred             ---cCCcCEEEEccCCCCCcc------ccc---CchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640           95 ---LIEVDQIYHLACPASPIF------YKY---NPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus        95 ---~~~~d~vi~~ag~~~~~~------~~~---~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                         ...+|+++|++|......      .+.   .....+.+|........+.......  ..++++|
T Consensus        81 ~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s  147 (268)
T d2h7ma1          81 IGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD  147 (268)
T ss_dssp             HCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccccccccccc
Confidence               134899999998653211      111   1222355666666655655554432  3444444

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.05  E-value=8.9e-10  Score=81.59  Aligned_cols=108  Identities=23%  Similarity=0.200  Sum_probs=74.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----------CCcCE
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----------IEVDQ  100 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----------~~~d~  100 (190)
                      .|+++||||++.||+++++.|+++ |++|++++|+.+..           +....++|+.+...           ...+.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~-Ga~V~i~~~~~~~~-----------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~   68 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKAR-GYRVVVLDLRREGE-----------DLIYVEGDVTREEDVRRAVARAQEEAPLFA   68 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEESSCCSS-----------SSEEEECCTTCHHHHHHHHHHHHHHSCEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCcccc-----------cceEeeccccchhhhHHHHHhhhccccccc
Confidence            388999999999999999999999 89999999875432           45667788876421           23455


Q ss_pred             EEEccCCCCCcc--------cccCchhHHHHHHHHHHHHHHHHHHc----------CC-eEEEEecceec
Q 029640          101 IYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVY  151 (190)
Q Consensus       101 vi~~ag~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~-~~i~vSS~~~~  151 (190)
                      ++++++......        ..+..+..+++|..+...+.+.+...          +. ++|++||...+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~  138 (241)
T d1uaya_          69 VVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAF  138 (241)
T ss_dssp             EEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHH
T ss_pred             hhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhc
Confidence            555554322211        11234457899999988887765322          22 79999997654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.05  E-value=7.4e-10  Score=84.63  Aligned_cols=120  Identities=10%  Similarity=-0.022  Sum_probs=74.4

Q ss_pred             ccCCCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCCCCChhh------------hhhhhcCC---ceEEEecccc
Q 029640           29 FQSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDN------------LRKWIGHP---RFELIRHDVT   91 (190)
Q Consensus        29 ~~~~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~------------~~~~~~~~---~~~~~~~D~~   91 (190)
                      .+++|+++||||+|  .||+++++.|+++ |.+|.+.+|+.......            ........   ++..+..++.
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la~~-Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLAAA-GAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFD   83 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHT-TCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCC
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHC-CCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhcc
Confidence            36899999999887  8999999999999 89999988753211100            00000001   1222222221


Q ss_pred             cc------------------------------ccCCcCEEEEccCCCCC---cc---cccCchhHHHHHHHHHHHHHHHH
Q 029640           92 EP------------------------------LLIEVDQIYHLACPASP---IF---YKYNPVKTIKTNVIGTLNMLGLA  135 (190)
Q Consensus        92 ~~------------------------------~~~~~d~vi~~ag~~~~---~~---~~~~~~~~~~~n~~~~~~l~~~~  135 (190)
                      +.                              .+.++|++|||||....   ..   ..+.+...+++|+.+...+.+++
T Consensus        84 ~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~  163 (297)
T d1d7oa_          84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF  163 (297)
T ss_dssp             SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHH
Confidence            11                              12369999999986431   11   22335567899999999999888


Q ss_pred             HHcCC---eEEEEecce
Q 029640          136 KRVGA---RILLTSTSE  149 (190)
Q Consensus       136 ~~~~~---~~i~vSS~~  149 (190)
                      .....   +++.+++..
T Consensus       164 ~~~~~~~g~~~~~~~~~  180 (297)
T d1d7oa_         164 LPIMNPGGASISLTYIA  180 (297)
T ss_dssp             GGGEEEEEEEEEEECGG
T ss_pred             HHHhhcCCcceeeeehh
Confidence            65432   456666544

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.94  E-value=5.4e-09  Score=78.35  Aligned_cols=76  Identities=21%  Similarity=0.211  Sum_probs=55.1

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhh-h--hcCCceEEEeccccccc----------------
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-W--IGHPRFELIRHDVTEPL----------------   94 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~-~--~~~~~~~~~~~D~~~~~----------------   94 (190)
                      .++||||++.||+++++.|+++ |++|++.+|+.+...+.+.. +  .........+.|..+..                
T Consensus         3 vAlVTGas~GIG~aia~~la~~-G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQ-GFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA   81 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence            5799999999999999999999 89999999976544332221 2  12345666666665431                


Q ss_pred             cCCcCEEEEccCCCCC
Q 029640           95 LIEVDQIYHLACPASP  110 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~  110 (190)
                      +.++|++|||||...+
T Consensus        82 ~g~iDilvnnAG~~~~   97 (266)
T d1mxha_          82 FGRCDVLVNNASAYYP   97 (266)
T ss_dssp             HSCCCEEEECCCCCCC
T ss_pred             hCCCCEEEECCccCCC
Confidence            2359999999997654

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.89  E-value=8.2e-09  Score=80.16  Aligned_cols=118  Identities=7%  Similarity=0.014  Sum_probs=74.9

Q ss_pred             CCEEEEEc--ccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh------------h-cCCceEEEeccc------
Q 029640           32 NMRILVTG--GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW------------I-GHPRFELIRHDV------   90 (190)
Q Consensus        32 ~~~vlItG--~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~------------~-~~~~~~~~~~D~------   90 (190)
                      +|.+||||  ++..||+++++.|+++ |.+|.+..+............            . .........+|+      
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~-GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKR-NVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHT-TCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHc-CCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence            58899999  5579999999999999 899998876543211111000            0 001122232332      


Q ss_pred             --------------cccc------------cCCcCEEEEccCCCCCc---c---cccCchhHHHHHHHHHHHHHHHHHHc
Q 029640           91 --------------TEPL------------LIEVDQIYHLACPASPI---F---YKYNPVKTIKTNVIGTLNMLGLAKRV  138 (190)
Q Consensus        91 --------------~~~~------------~~~~d~vi~~ag~~~~~---~---~~~~~~~~~~~n~~~~~~l~~~~~~~  138 (190)
                                    .+..            +.++|++||+||.....   .   ..+.+...+++|+.++..+.+.+.+.
T Consensus        81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~  160 (329)
T d1uh5a_          81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence                          2221            23699999999855421   1   12345567899999999988888654


Q ss_pred             ---CCeEEEEeccee
Q 029640          139 ---GARILLTSTSEV  150 (190)
Q Consensus       139 ---~~~~i~vSS~~~  150 (190)
                         +.++|.+||...
T Consensus       161 m~~~GsIv~iss~~~  175 (329)
T d1uh5a_         161 MKPQSSIISLTYHAS  175 (329)
T ss_dssp             EEEEEEEEEEECGGG
T ss_pred             cccccccccceeehh
Confidence               137888987553

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=98.82  E-value=3.2e-09  Score=79.29  Aligned_cols=97  Identities=14%  Similarity=0.048  Sum_probs=63.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCCc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI  111 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~~  111 (190)
                      ||.|+||||++.||+++++.|+++ |++|++++|+.......+....   .......|........+|+++|+||.... 
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~-Ga~V~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~~~~id~lv~~Ag~~~~-   75 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAA-GHQIVGIDIRDAEVIADLSTAE---GRKQAIADVLAKCSKGMDGLVLCAGLGPQ-   75 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSSSSEECCTTSHH---HHHHHHHHHHTTCTTCCSEEEECCCCCTT-
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECChHHHHHHhcCHH---HHHHHHHHHHHHhCCCCcEEEEcCCCCCc-
Confidence            578999999999999999999999 8999999886543221111000   00111122222333469999999986442 


Q ss_pred             ccccCchhHHHHHHHHHHHHHHHH
Q 029640          112 FYKYNPVKTIKTNVIGTLNMLGLA  135 (190)
Q Consensus       112 ~~~~~~~~~~~~n~~~~~~l~~~~  135 (190)
                        .........+|..+...+.+..
T Consensus        76 --~~~~~~~~~~~~~~~~~~~~~~   97 (257)
T d1fjha_          76 --TKVLGNVVSVNYFGATELMDAF   97 (257)
T ss_dssp             --CSSHHHHHHHHTHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHh
Confidence              2345566777888777666554

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=1.2e-06  Score=59.77  Aligned_cols=99  Identities=13%  Similarity=0.075  Sum_probs=59.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcC---CCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccc-cccCCcCEEEEccCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENE---KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PLLIEVDQIYHLACP  107 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~---~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~d~vi~~ag~  107 (190)
                      |++|.|.||||++|+.+++.|+++.   ..++..+.++...... .. .. ....  ...++.+ ..+.++|++|.+++.
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~-~~-~~-~~~~--~~~~~~~~~~~~~~DivF~a~~~   75 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA-PS-FG-GTTG--TLQDAFDLEALKALDIIVTCQGG   75 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC-CG-GG-TCCC--BCEETTCHHHHHTCSEEEECSCH
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc-cc-cc-CCce--eeecccchhhhhcCcEEEEecCc
Confidence            5789999999999999999888763   2456555543322111 11 11 1111  1122222 345689999999841


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCC
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD  153 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~  153 (190)
                      .                  .+..+...+.+.+.+.+.++.++.|.-
T Consensus        76 ~------------------~s~~~~~~~~~~g~~~~VID~Ss~fR~  103 (146)
T d1t4ba1          76 D------------------YTNEIYPKLRESGWQGYWIDAASSLRM  103 (146)
T ss_dssp             H------------------HHHHHHHHHHHTTCCCEEEECSSTTTT
T ss_pred             h------------------HHHHhhHHHHhcCCCeecccCCccccc
Confidence            1                  134566666777877667777666653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.24  E-value=8.7e-06  Score=55.36  Aligned_cols=111  Identities=12%  Similarity=0.115  Sum_probs=70.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhh----hcCCceEEEeccccccccCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKW----IGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.+||.|.| +|.+|..++..|+.++- .++.+++++.+.......++    ...........|.  ++..++|+||.+|
T Consensus         4 ~~~KI~IIG-aG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~--~~~~~adivvita   80 (146)
T d1ez4a1           4 NHQKVVLVG-DGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY--SDCKDADLVVITA   80 (146)
T ss_dssp             TBCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG--GGGTTCSEEEECC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH--HHhccccEEEEec
Confidence            568999999 59999999999999842 68999988643322111111    1122334444554  3456899999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vS  146 (190)
                      |....  ......+.+..|..-...+++.+.+++-  -+|.+|
T Consensus        81 g~~~~--~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt  121 (146)
T d1ez4a1          81 GAPQK--PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA  121 (146)
T ss_dssp             CC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             ccccC--CCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence            85432  2334556688899999999988888764  344444

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.22  E-value=1.8e-05  Score=53.72  Aligned_cols=112  Identities=13%  Similarity=0.152  Sum_probs=72.7

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCCh-----hhhhhhhc--CCceEEE-eccccccccCCcCEEEE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSK-----DNLRKWIG--HPRFELI-RHDVTEPLLIEVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~-----~~~~~~~~--~~~~~~~-~~D~~~~~~~~~d~vi~  103 (190)
                      |||.|+|++|.+|..++..|+.++- .++.+++++.....     ..+.+...  ....+.. ..+-......+.|+||-
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            6899999999999999999999842 58888887532211     11222111  1222322 22222245668999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEe
Q 029640          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS  146 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vS  146 (190)
                      +||...  ...++..+.++.|..-...+++...+.+- .++.+|
T Consensus        81 tAG~~~--~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivVt  122 (145)
T d1hyea1          81 TSGVPR--KEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVIT  122 (145)
T ss_dssp             CCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECS
T ss_pred             eccccc--CCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEEc
Confidence            998543  22345667889999999999988877753 455443

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=1.2e-05  Score=54.53  Aligned_cols=112  Identities=16%  Similarity=0.063  Sum_probs=72.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhc-C-CCeEEEEcCCCCCChhhhhhhhc---CCceEEEeccccccccCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMEN-E-KNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~-~-~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      |||.|+|++|.+|+.++..|..+ + ..++.+++..+ .......++.+   ......+..+-...+..+.|+||.+||.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCc
Confidence            68999999999999999988654 2 46888887642 22222222221   1222222211112345689999999985


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ..  ...++..+.+..|..-...+.+.+.++.-  .+|.+|.
T Consensus        80 ~~--k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN  119 (145)
T d2cmda1          80 RR--KPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN  119 (145)
T ss_dssp             CC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             cC--CCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence            43  23345667889999999999999888753  5666664

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.15  E-value=2.5e-05  Score=53.49  Aligned_cols=115  Identities=12%  Similarity=0.029  Sum_probs=74.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-----CCceEEEeccccccccCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.+||.|+|+ |.+|..++..|..++-.++.+++.+.........++..     .........+-.+.+..+.|+||.++
T Consensus         6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvita   84 (154)
T d1pzga1           6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA   84 (154)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEec
Confidence            5689999996 99999999988888446888887765433322222211     11122222222234457899999999


Q ss_pred             CCCCCcc---cccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 029640          106 CPASPIF---YKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       106 g~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vS  146 (190)
                      |......   ......+.+..|......+++.+.+.+-  -++.+|
T Consensus        85 g~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs  130 (154)
T d1pzga1          85 GLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT  130 (154)
T ss_dssp             SCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             ccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            8654321   1234566788999999999999988774  344444

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.15  E-value=4.4e-06  Score=58.80  Aligned_cols=100  Identities=12%  Similarity=0.173  Sum_probs=58.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCCh-hhh----hhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSK-DNL----RKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~-~~~----~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |++|.|.||||++|+.+++.|.++...++..+ .+...... ..+    +.+...........+..+....++|++|.+.
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~al   80 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLAT   80 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECS
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccc
Confidence            57999999999999999999999855565443 33222111 111    1121122223333333333456789999887


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      ....                  ...+.....+.++++|=.|+..
T Consensus        81 p~~~------------------s~~~~~~~~~~~~~vIDlSadf  106 (179)
T d2g17a1          81 AHEV------------------SHDLAPQFLQAGCVVFDLSGAF  106 (179)
T ss_dssp             CHHH------------------HHHHHHHHHHTTCEEEECSSTT
T ss_pred             cchh------------------HHHHhhhhhhcCceeecccccc
Confidence            4210                  1234555566677888777744

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.10  E-value=3.1e-05  Score=52.63  Aligned_cols=112  Identities=15%  Similarity=0.213  Sum_probs=75.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhh-----cCCceEEEeccccccccCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWI-----GHPRFELIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~d~vi~~  104 (190)
                      .++||.|+|+ |.+|..++..|+.++- .++.++++.+........++.     ....+.....|.  +++.+.|+||.+
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~--~~l~daDvvvit   81 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY--DDCRDADLVVIC   81 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG--GGTTTCSEEEEC
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH--HHhccceeEEEe
Confidence            4578999995 9999999999999843 478888875433222222221     122334444443  456689999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      +|....  ..+...+.+..|..-...+++..+++.-  .+|.+|-
T Consensus        82 ag~~~~--~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN  124 (148)
T d1ldna1          82 AGANQK--PGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (148)
T ss_dssp             CSCCCC--TTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             cccccc--cCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence            985432  2345567788899988999888887753  5666553

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.09  E-value=2.5e-05  Score=52.86  Aligned_cols=110  Identities=15%  Similarity=0.009  Sum_probs=72.0

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCC---ceEEEecccc-ccccCCcCEEEEccCCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHP---RFELIRHDVT-EPLLIEVDQIYHLACPA  108 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~-~~~~~~~d~vi~~ag~~  108 (190)
                      ||.|+||+|.+|+.++..|+.++- .++.+++....  .....++....   ........-. .+...+.|+||..||..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~--~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~   79 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT--PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP   79 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH--HHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEecccc--chhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence            799999999999999999998854 57777776432  21122222111   1121111111 12356799999999853


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      .  ...++..+.++.|......+++.+.+++-  .++.+|.
T Consensus        80 ~--~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN  118 (144)
T d1mlda1          80 R--KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN  118 (144)
T ss_dssp             C--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             C--CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            3  23345677899999999999999998874  5555554

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=1.4e-05  Score=49.90  Aligned_cols=90  Identities=20%  Similarity=0.193  Sum_probs=61.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      ..+++|+|.| -|-.|..+++.|.++ |.+|++.+.+.......  .+.  ..+........+....++|.||-..|...
T Consensus         3 ~~~K~v~ViG-lG~sG~s~a~~L~~~-g~~v~~~D~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~d~vi~SPGi~~   76 (93)
T d2jfga1           3 YQGKNVVIIG-LGLTGLSCVDFFLAR-GVTPRVMDTRMTPPGLD--KLP--EAVERHTGSLNDEWLMAADLIVASPGIAL   76 (93)
T ss_dssp             CTTCCEEEEC-CSHHHHHHHHHHHHT-TCCCEEEESSSSCTTGG--GSC--TTSCEEESBCCHHHHHHCSEEEECTTSCT
T ss_pred             cCCCEEEEEe-ECHHHHHHHHHHHHC-CCEEEEeeCCcCchhHH--HHh--hccceeecccchhhhccCCEEEECCCCCC
Confidence            4789999999 588999999999999 89999998765533221  111  22333333433344567899999887532


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCCeEE
Q 029640          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL  143 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i  143 (190)
                      .                  ..+++.++++++++|
T Consensus        77 ~------------------~~~~~~a~~~gi~ii   92 (93)
T d2jfga1          77 A------------------HPSLSAAADAGIEIV   92 (93)
T ss_dssp             T------------------SHHHHHHHHTTCEEE
T ss_pred             C------------------CHHHHHHHHcCCCeE
Confidence            1                  136677777777665

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.99  E-value=3.4e-05  Score=53.92  Aligned_cols=112  Identities=18%  Similarity=0.128  Sum_probs=71.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcC--C--C--eEEEEcCCCCCChhhhh----hhhc--CCce-EEEeccccccccCCc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENE--K--N--EVIVVDNYFTGSKDNLR----KWIG--HPRF-ELIRHDVTEPLLIEV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~--~--~--~v~~~~r~~~~~~~~~~----~~~~--~~~~-~~~~~D~~~~~~~~~   98 (190)
                      ..+|.|+||+|.||+.++-.|++..  |  .  .+.+++...  ....+.    ++.+  .... .....+-..+.+.+.
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~--~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~a  101 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSER--SFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDV  101 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGG--GHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTC
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCcc--ccchhcchhhhhcccccccccCccccccchhhccCC
Confidence            3579999999999999999998752  1  2  333443322  211111    1111  1122 222233334567789


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-C--CeEEEEec
Q 029640           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-G--ARILLTST  147 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~--~~~i~vSS  147 (190)
                      |+||-.+|..  ....+...+.++.|..-...+.+.+.++ +  .+++.+|.
T Consensus       102 DvVvi~ag~~--rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N  151 (175)
T d7mdha1         102 DWALLIGAKP--RGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN  151 (175)
T ss_dssp             SEEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             ceEEEeeccC--CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence            9999999854  3345667788999999999999999885 3  36666664

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.95  E-value=0.00019  Score=48.14  Aligned_cols=110  Identities=14%  Similarity=0.047  Sum_probs=72.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhc-----CCceEEEeccccccccCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      |||.|+|+ |.+|..++..|+.++- .++.+++.+..........+..     .........+- .+++.+.|+|+-+||
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~-~~~~~dadvvvitag   78 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSND-YADTANSDIVIITAG   78 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESC-GGGGTTCSEEEECCS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCC-HHHhcCCeEEEEEEe
Confidence            67999995 9999999999999842 6899988766543322222211     12333332221 245678999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vS  146 (190)
                      ....  ......+.+..|..-...+++.+.++.-  -++.+|
T Consensus        79 ~~~~--~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvt  118 (142)
T d1guza1          79 LPRK--PGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS  118 (142)
T ss_dssp             CCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred             cCCC--CCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence            5432  2334567788899988899988887653  454444

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.90  E-value=0.00025  Score=47.59  Aligned_cols=110  Identities=16%  Similarity=0.160  Sum_probs=71.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC----CceEEEeccccccccCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      +||.|+|+ |.+|..++..|+.++- .++.+++++.+.......++.+.    ........|  ..+..+.|+|+..||.
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~--~~~~~~adivvitag~   78 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD--YSDVKDCDVIVVTAGA   78 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C--GGGGTTCSEEEECCCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc--HHHhCCCceEEEeccc
Confidence            47899995 9999999999999843 48999988776554443333221    223333232  3456789999999985


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ...  ..++..+.+..|..-...+++.+.++.-  .+|.+|.
T Consensus        79 ~~~--~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  118 (142)
T d1y6ja1          79 NRK--PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN  118 (142)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred             ccC--cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence            432  2345667789999999999998888753  4555553

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.87  E-value=0.00014  Score=48.96  Aligned_cols=110  Identities=14%  Similarity=0.002  Sum_probs=73.4

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCC--Chhhhhhhh----cCCceEEEeccccccccCCcCEEEEccC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTG--SKDNLRKWI----GHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~--~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      ||.|+|++|.+|..++..|+.++- .++.+++.....  ..-...++.    -.........|.  ++..+.|+|+-.||
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~--~~~~~aDiVvitaG   79 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY--EDTAGSDVVVITAG   79 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG--GGGTTCSEEEECCC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH--HHhhhcCEEEEecc
Confidence            789999999999999999999843 467777653221  111111121    123344444443  34568999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ...  ...++..+.++.|..-...+++..++.+-  .++.+|.
T Consensus        80 ~~~--~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          80 IPR--QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             CCC--CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             ccc--ccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence            543  23345677899999999999999988763  5665653

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.86  E-value=9.7e-05  Score=50.73  Aligned_cols=112  Identities=14%  Similarity=0.097  Sum_probs=74.8

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhc-----CCceEEEeccccccccCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~d~vi~~  104 (190)
                      +..||.|+|+ |.+|..++..|+.++- .++.+++++.+.......++.+     .........|.  .+..+.|+||..
T Consensus        19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~--~~~~~adiVVit   95 (160)
T d1i0za1          19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY--SVTANSKIVVVT   95 (160)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG--GGGTTCSEEEEC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch--hhcccccEEEEe
Confidence            4579999995 9999999999999943 4788888754433322222211     11222222332  456789999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ||....  ..++..+.++.|..-...++...++.+-  -+|.+|.
T Consensus        96 Ag~~~~--~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN  138 (160)
T d1i0za1          96 AGVRQQ--EGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN  138 (160)
T ss_dssp             CSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             cCCccc--cCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            986432  2345567788999999999988888764  4666654

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.85  E-value=4.5e-06  Score=58.54  Aligned_cols=40  Identities=25%  Similarity=0.389  Sum_probs=34.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN   73 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~   73 (190)
                      |||.|+||+|.+|+.+++.|+++ |++|.+.+|+++.....
T Consensus         1 Mki~vigGaG~iG~alA~~la~~-G~~V~l~~R~~e~~~~l   40 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATL-GHEIVVGSRREEKAEAK   40 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHH
Confidence            67999998999999999999999 99999999976554433

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.85  E-value=0.0002  Score=48.01  Aligned_cols=109  Identities=15%  Similarity=0.116  Sum_probs=72.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhc----CCceEEEeccccccccCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      |||.|+|+ |.+|..++..|+.++- .++.+++++.+.......++..    .........|.  +++.+.|+||.+||.
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~--~~~~~adivvitag~   77 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY--ADLKGSDVVIVAAGV   77 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG--GGGTTCSEEEECCCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcH--HHhcCCCEEEEeccc
Confidence            68999995 9999999999988843 5788888754333222212111    12334444443  456789999999985


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vS  146 (190)
                      ...  ..+...+.+..|..-...+++...+..-  .++.+|
T Consensus        78 ~~~--~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt  116 (140)
T d1a5za1          78 PQK--PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT  116 (140)
T ss_dssp             CCC--SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             ccC--CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence            432  2344567788898888888888887763  455544

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.82  E-value=0.00017  Score=48.51  Aligned_cols=110  Identities=16%  Similarity=0.086  Sum_probs=72.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhh---c--CCceEEEe-ccccccccCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWI---G--HPRFELIR-HDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~---~--~~~~~~~~-~D~~~~~~~~~d~vi~~a  105 (190)
                      |||.|+|+ |.+|..++..|+.++- .++.+++++.+...-...++.   .  ........ .|.  +++.+.|+||-.|
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~--~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY--SLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG--GGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH--HHhccccEEEEec
Confidence            68999995 9999999999998843 578888875433322211121   0  11222222 343  4677899999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      |...  .......+.+..|..-...+.+.+++.+-  .++.+|.
T Consensus        78 g~~~--~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1ojua1          78 GLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (142)
T ss_dssp             CCCC--CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             cccC--CCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence            8543  22345667788899999999998888763  4555553

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.82  E-value=2.1e-05  Score=52.30  Aligned_cols=67  Identities=21%  Similarity=0.239  Sum_probs=50.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------CCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------~~~d~vi~~a  105 (190)
                      |+|+|+|+ |.+|+.+++.|.+. |++|.+++++++    ....+...-....+.+|..+...      .+.|.++-+.
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~-g~~v~vid~d~~----~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t   73 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEK-GHDIVLIDIDKD----ICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT   73 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESCHH----HHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCCcceecCChh----hhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccC
Confidence            78999995 99999999999999 899999987433    33333222256788899998753      3578777654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.81  E-value=0.00017  Score=48.49  Aligned_cols=109  Identities=16%  Similarity=0.140  Sum_probs=67.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-----CCceEEE-eccccccccCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-----HPRFELI-RHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~-~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +||.|+|+ |.+|..++..|+.++-.++.+++...........++..     ....... ..|.  .+..+.|+||-+||
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~--~~~~~advvvitag   78 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY--ADTANSDVIVVTSG   78 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG--GGGTTCSEEEECCS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH--HHhcCCCEEEEeee
Confidence            68999995 99999999999888446888888765443322222211     1122222 1233  34567999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 029640          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vS  146 (190)
                      ....  ..+...+.+..|..-...+++...+++-  .++.+|
T Consensus        79 ~~~~--~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt  118 (142)
T d1uxja1          79 APRK--PGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN  118 (142)
T ss_dssp             CC-----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred             ccCC--cCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence            5432  2334556678899888899988888663  455444

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.79  E-value=2.8e-05  Score=52.72  Aligned_cols=96  Identities=17%  Similarity=0.239  Sum_probs=52.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC---CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccc-cccCCcCEEEEccCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK---NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PLLIEVDQIYHLACPA  108 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~d~vi~~ag~~  108 (190)
                      |||.|.||||++|+.+++.|+++..   .++..+..+....  +.......  .... .+..+ ..+.++|+||.|....
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~g--k~~~~~~~--~~~~-~~~~~~~~~~~~DvvF~alp~~   75 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV--PAPNFGKD--AGML-HDAFDIESLKQLDAVITCQGGS   75 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSS--BCCCSSSC--CCBC-EETTCHHHHTTCSEEEECSCHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccc--cccccCCc--ceee-ecccchhhhccccEEEEecCch
Confidence            6899999999999999999987532   3444443322111  11111111  1111 11122 2346799999998421


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceec
Q 029640          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~  151 (190)
                                        .+..+...+.+.+.+.+.++-++.|
T Consensus        76 ------------------~s~~~~~~l~~~g~~~~VIDlSsdf  100 (147)
T d1mb4a1          76 ------------------YTEKVYPALRQAGWKGYWIDAASTL  100 (147)
T ss_dssp             ------------------HHHHHHHHHHHTTCCSEEEESSSTT
T ss_pred             ------------------HHHHHhHHHHHcCCceEEEeCCccc
Confidence                              0345666667777664444433333

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.78  E-value=9e-05  Score=50.01  Aligned_cols=93  Identities=18%  Similarity=0.191  Sum_probs=55.7

Q ss_pred             CEEEEEcccchHHHHHHHHHHhc--CCCeEEEEcCC-CCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~--~~~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      ++|.|.||||++|+.+++.|.++  ...++..+..+ .....  +..    ..-.....++.+..+.++|++|.+++.. 
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~--i~~----~~~~~~~~~~~~~~~~~~d~vf~a~p~~-   75 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR--MGF----AESSLRVGDVDSFDFSSVGLAFFAAAAE-   75 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE--EEE----TTEEEECEEGGGCCGGGCSEEEECSCHH-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcc--eee----ccccchhccchhhhhccceEEEecCCcc-
Confidence            78999999999999999999764  23455554332 22211  111    1112233444455567899999887421 


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                                       ....+...+.+.+.++|=.|+.+
T Consensus        76 -----------------~s~~~~~~~~~~g~~VID~Ss~f   98 (144)
T d2hjsa1          76 -----------------VSRAHAERARAAGCSVIDLSGAL   98 (144)
T ss_dssp             -----------------HHHHHHHHHHHTTCEEEETTCTT
T ss_pred             -----------------hhhhhccccccCCceEEeechhh
Confidence                             12345555666777777666643

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.77  E-value=6e-05  Score=51.48  Aligned_cols=113  Identities=17%  Similarity=0.141  Sum_probs=68.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC----CeEEEEcCCCCCChhhhhh----hh--cCCceEEEe-ccccccccCCcCEE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK----NEVIVVDNYFTGSKDNLRK----WI--GHPRFELIR-HDVTEPLLIEVDQI  101 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~----~~v~~~~r~~~~~~~~~~~----~~--~~~~~~~~~-~D~~~~~~~~~d~v  101 (190)
                      +||.|+||+|.+|+.++..|+..+-    ..+....-...........    +.  .......+. .+-....+.+.|+|
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV   84 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence            6899999999999999999998731    1121111111111111111    11  112233333 22233456789999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CC--eEEEEec
Q 029640          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA--RILLTST  147 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~--~~i~vSS  147 (190)
                      |-.+|...  ...++..+.+..|..-...+.+.+.+. +.  .++.+|.
T Consensus        85 iitaG~~~--~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN  131 (154)
T d1y7ta1          85 LLVGAAPR--KAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN  131 (154)
T ss_dssp             EECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             EeecCcCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence            99998643  234566778899999999999988875 32  5555554

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.71  E-value=0.00019  Score=46.18  Aligned_cols=71  Identities=17%  Similarity=0.204  Sum_probs=56.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.+++|+|.| +|-+|...++.|++. |.+|++++....   ..+..+....++.+..-+..+..+.+.+.|+.+.
T Consensus        10 l~~k~vlVvG-~G~va~~ka~~ll~~-ga~v~v~~~~~~---~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at   80 (113)
T d1pjqa1          10 LRDRDCLIVG-GGDVAERKARLLLEA-GARLTVNALTFI---PQFTVWANEGMLTLVEGPFDETLLDSCWLAIAAT   80 (113)
T ss_dssp             CBTCEEEEEC-CSHHHHHHHHHHHHT-TBEEEEEESSCC---HHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECC
T ss_pred             eCCCEEEEEC-CCHHHHHHHHHHHHC-CCeEEEEeccCC---hHHHHHHhcCCceeeccCCCHHHhCCCcEEeecC
Confidence            5789999999 899999999999999 899998865332   3344445566888988888877888888888765

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=5.4e-05  Score=52.02  Aligned_cols=112  Identities=13%  Similarity=0.084  Sum_probs=71.8

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhc-----CCceEEEeccccccccCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~d~vi~~  104 (190)
                      +..||.|+| .|.+|..++..|+.++- .++.+++++.+.......++.+     .........|.  .+..+.|+||..
T Consensus        18 ~~~KI~IIG-aG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~--~~~~~adivvit   94 (159)
T d2ldxa1          18 SRCKITVVG-VGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY--NVSANSKLVIIT   94 (159)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG--GGGTTEEEEEEC
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch--hhhccccEEEEe
Confidence            446899999 59999999999999853 4788888754333222222211     11222222333  345679999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ||....  ..+...+.++.|..-...++...++.+-  .++.+|.
T Consensus        95 ag~~~~--~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          95 AGARMV--SGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             CSCCCC--TTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             cccccC--CCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            985442  2334455678888888888887776653  5666664

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.70  E-value=2.4e-05  Score=53.89  Aligned_cols=75  Identities=19%  Similarity=0.279  Sum_probs=51.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      +.+++|+|+|+ |-+|+.+++.|...+..++++..|..+........+    .......+-......++|+||.+.+...
T Consensus        22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~----~~~~~~~~~~~~~l~~~Divi~atss~~   96 (159)
T d1gpja2          22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----GGEAVRFDELVDHLARSDVVVSATAAPH   96 (159)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----TCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred             cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhh----hcccccchhHHHHhccCCEEEEecCCCC
Confidence            47899999995 999999999999994357999988644433333222    2344444433344568999999987443

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=97.69  E-value=0.0003  Score=47.27  Aligned_cols=110  Identities=15%  Similarity=0.127  Sum_probs=71.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhc----CCceEEEeccccccccCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      .||.|+|+ |.+|..++..|+.++- .++.++++++....-...++.+    .........+-. ++..+.|+||..||.
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~   79 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGP   79 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEeccc
Confidence            47899995 9999999999999843 5788888765433222112211    112233222222 345679999999985


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vS  146 (190)
                      ..  ...+...+.+..|..-...+++.+++.+-  -++.+|
T Consensus        80 ~~--~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt  118 (143)
T d1llda1          80 RQ--KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT  118 (143)
T ss_dssp             CC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             cc--CCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            43  22345667889999999999988888764  455555

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.68  E-value=6.1e-05  Score=52.35  Aligned_cols=75  Identities=15%  Similarity=0.276  Sum_probs=52.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      ..+++|+|.| +|..++.++..|.+. +.+|.++.|+.+........+.....+.....|  +.....+|+|||+....
T Consensus        16 ~~~k~vlIlG-aGGaarai~~aL~~~-~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~--~~~~~~~diiIN~tp~g   90 (171)
T d1p77a1          16 RPNQHVLILG-AGGATKGVLLPLLQA-QQNIVLANRTFSKTKELAERFQPYGNIQAVSMD--SIPLQTYDLVINATSAG   90 (171)
T ss_dssp             CTTCEEEEEC-CSHHHHTTHHHHHHT-TCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG--GCCCSCCSEEEECCCC-
T ss_pred             CCCCEEEEEC-CcHHHHHHHHHHccc-CceeeeccchHHHHHHHHHHHhhccccchhhhc--cccccccceeeeccccc
Confidence            4789999999 688899999999876 689999999765544443333333344444433  33456799999997644

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.68  E-value=4.3e-05  Score=53.05  Aligned_cols=74  Identities=16%  Similarity=0.211  Sum_probs=52.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      .++++|+|.| +|..+++++..|.+. +.++.++.|+.+........+.....+..+  +..+....++|+|||+...
T Consensus        16 ~~~k~vlIlG-aGGaarai~~al~~~-g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~--~~~~~~~~~~dliIN~Tp~   89 (170)
T d1nyta1          16 RPGLRILLIG-AGGASRGVLLPLLSL-DCAVTITNRTVSRAEELAKLFAHTGSIQAL--SMDELEGHEFDLIINATSS   89 (170)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSHHHHHHHHHHTGGGSSEEEC--CSGGGTTCCCSEEEECCSC
T ss_pred             CCCCEEEEEC-CcHHHHHHHHHhccc-ceEEEeccchHHHHHHHHHHHhhccccccc--ccccccccccceeeccccc
Confidence            4789999999 688899999999998 678999999765544433333333344443  3334445678999999753

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=3e-05  Score=53.11  Aligned_cols=36  Identities=25%  Similarity=0.199  Sum_probs=32.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      |||+|+|+ |.+|..++..|.+. |++|.++.|.....
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~-G~~V~~~~r~~~~~   36 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQ-GHEVQGWLRVPQPY   36 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSSCCSE
T ss_pred             CEEEEECc-CHHHHHHHHHHHHC-CCceEEEEcCHHHh
Confidence            78999995 99999999999999 89999999976543

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.65  E-value=0.00017  Score=49.16  Aligned_cols=110  Identities=16%  Similarity=0.144  Sum_probs=66.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcC----CC--eEEEEcCCCCCChhhhhhh----h--cCCceEEEe-ccccccccCCcC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENE----KN--EVIVVDNYFTGSKDNLRKW----I--GHPRFELIR-HDVTEPLLIEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~----~~--~v~~~~r~~~~~~~~~~~~----~--~~~~~~~~~-~D~~~~~~~~~d   99 (190)
                      +||.|+||+|.+|+.++..|+..+    ..  ++.+.+.+  ........+    .  .......+. .+-..+.+.+.|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   81 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDIT--PMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLD   81 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCG--GGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCc--cchhhhhhhhhhhcccccccccccccCcccccccCCce
Confidence            689999999999999999998752    12  23333332  222111111    1  112222222 222234567899


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CC--eEEEEe
Q 029640          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA--RILLTS  146 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~--~~i~vS  146 (190)
                      +||-.+|....  ..++..+.++.|..-...+.+...++ +.  .+|.+|
T Consensus        82 vVVitag~~~~--~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs  129 (154)
T d5mdha1          82 VAILVGSMPRR--DGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG  129 (154)
T ss_dssp             EEEECCSCCCC--TTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             EEEEecccCCC--CCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence            99999985442  33455667888999888888887664 53  445555

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.63  E-value=0.0012  Score=44.64  Aligned_cols=114  Identities=14%  Similarity=0.127  Sum_probs=72.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-----CCceEEEeccccccccCCcCEEEEccC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      ..||.|.| .|.+|..++..|+.++-.++.+++++.+.......++..     .........+ ..++..+.|+||.++|
T Consensus         3 ~~KI~IIG-aG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~-~~~~~~~advvvitag   80 (150)
T d1t2da1           3 KAKIVLVG-SGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN-TYDDLAGADVVIVTAG   80 (150)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC-CGGGGTTCSEEEECCS
T ss_pred             CCeEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc-cccccCCCcEEEEecc
Confidence            36899999 599999999888777446888888765443322222211     1222222222 2245567999999998


Q ss_pred             CCCC-ccc--ccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029640          107 PASP-IFY--KYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       107 ~~~~-~~~--~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      .... ..+  .......+..|..-...+++.+++..-  .++.+|.
T Consensus        81 ~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtN  126 (150)
T d1t2da1          81 FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN  126 (150)
T ss_dssp             CSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             cccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            5442 211  123556788999999999988888763  4555553

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.54  E-value=4.7e-05  Score=53.19  Aligned_cols=33  Identities=21%  Similarity=0.415  Sum_probs=27.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~   64 (190)
                      |+||.|.||||++|+.+++.|.++...++..+.
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~   33 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLS   33 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEee
Confidence            578999999999999999999988555555543

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.50  E-value=0.00093  Score=44.91  Aligned_cols=111  Identities=13%  Similarity=0.113  Sum_probs=69.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhh---c--CCceEEEeccccccccCCcCEEEEccC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWI---G--HPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~---~--~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +||.|+| .|.+|..++..|+.++- .++.+++++.........++.   .  .........|.  ++..+.|+||-+||
T Consensus         2 kKI~IIG-aG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~--~~l~~adiVVitaG   78 (146)
T d1hyha1           2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW--AALADADVVISTLG   78 (146)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG--GGGTTCSEEEECCS
T ss_pred             CeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH--HHhccccEEEEecc
Confidence            7899999 59999999999999842 578888775443222212221   1  12223333332  34678999999998


Q ss_pred             CCCCcc--cccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Q 029640          107 PASPIF--YKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       107 ~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vS  146 (190)
                      ......  ......+.++.|..-...+.+..++.+-  -+|.+|
T Consensus        79 ~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt  122 (146)
T d1hyha1          79 NIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS  122 (146)
T ss_dssp             CGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             ccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence            543211  1122345678898888888888888763  455544

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.45  E-value=0.00022  Score=48.51  Aligned_cols=93  Identities=16%  Similarity=0.243  Sum_probs=53.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcC--CCeEEEEcCC-CCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~--~~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      =+|.|.||||++|.++++.|.++.  ..++..+..+ ....  .+..    ..-.....+..+....+.|.++.+++...
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~--~~~~----~~~~~~~~~~~~~~~~~~d~~f~~~~~~~   75 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGK--SLKF----KDQDITIEETTETAFEGVDIALFSAGSST   75 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTC--EEEE----TTEEEEEEECCTTTTTTCSEEEECSCHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccc--cccc----cCCcccccccchhhhhhhhhhhhccCccc
Confidence            379999999999999999998872  2334333321 1111  1110    11122233444556677898888874211


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                                        +..+...+.+.+.++|=.|+..
T Consensus        76 ------------------s~~~~~~~~~~~~~VIDlSsdf   97 (154)
T d2gz1a1          76 ------------------SAKYAPYAVKAGVVVVDNTSYF   97 (154)
T ss_dssp             ------------------HHHHHHHHHHTTCEEEECSSTT
T ss_pred             ------------------hhhHHhhhccccceehhcChhh
Confidence                              2334445556677887777644

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.41  E-value=0.00015  Score=50.90  Aligned_cols=33  Identities=27%  Similarity=0.538  Sum_probs=27.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV   63 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~   63 (190)
                      +..||.|.||||+.|+.+++.|.++...++..+
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l   36 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVM   36 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEE
T ss_pred             CccEEEEECcccHHHHHHHHHHHhCCCceEEEE
Confidence            456899999999999999999999865565554

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.39  E-value=0.00037  Score=47.78  Aligned_cols=38  Identities=24%  Similarity=0.389  Sum_probs=32.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK   71 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~   71 (190)
                      .|+|+|.| +|.+|+.+++.|.++ |++|++..|+.+...
T Consensus         2 ~K~IliiG-aG~~G~~~a~~L~~~-g~~V~v~dr~~~~a~   39 (182)
T d1e5qa1           2 TKSVLMLG-SGFVTRPTLDVLTDS-GIKVTVACRTLESAK   39 (182)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHTT-TCEEEEEESCHHHHH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEECChHHHH
Confidence            58999998 599999999999999 899999999655433

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.37  E-value=5.7e-05  Score=52.39  Aligned_cols=72  Identities=15%  Similarity=0.083  Sum_probs=47.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEe-ccccc--cccCCcCEEEEccC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR-HDVTE--PLLIEVDQIYHLAC  106 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~D~~~--~~~~~~d~vi~~ag  106 (190)
                      .++.+|+|+|++|.+|...++.+... |.+|+++.++++..+ ....+. ..  ..+. .|..+  ....++|+||.+.|
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~-~~~~lG-a~--~~i~~~~~~~~~~~~~g~D~v~d~~G  100 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLA-LPLALG-AE--EAATYAEVPERAKAWGGLDLVLEVRG  100 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSH-HHHHTT-CS--EEEEGGGHHHHHHHTTSEEEEEECSC
T ss_pred             CCCCEEEEEeccccchhhhhhhhccc-ccccccccccccccc-cccccc-cc--eeeehhhhhhhhhccccccccccccc
Confidence            47889999999999999999988888 889998887654433 222221 11  1111 11111  12346999999876

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.35  E-value=0.00047  Score=47.29  Aligned_cols=69  Identities=13%  Similarity=0.122  Sum_probs=44.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |++|+|.| .|.+|..+++.|.+.+. .+|++.+++.+..    ........+.....+........+|+||.+.
T Consensus         1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~dlIila~   70 (171)
T d2g5ca2           1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESI----SKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS   70 (171)
T ss_dssp             CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHH----HHHHHTTSCSEEESCGGGGGGTCCSEEEECS
T ss_pred             CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECChHHH----HHHHHhhcchhhhhhhhhhhccccccccccC
Confidence            56899998 89999999999999832 4788887753322    2222222233333444444445788888776

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.23  E-value=0.00079  Score=46.74  Aligned_cols=72  Identities=15%  Similarity=0.047  Sum_probs=47.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEe-cccc--cc-----ccCCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR-HDVT--EP-----LLIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~D~~--~~-----~~~~~d~v  101 (190)
                      .++.+|+|+|++|.+|..+++..... |.+|+++.++++. .+....+   ...+.+. -|..  +.     ...++|+|
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~-~~~~~~~---Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v  102 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEK-IAYLKQI---GFDAAFNYKTVNSLEEALKKASPDGYDCY  102 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHH-HHHHHHT---TCSEEEETTSCSCHHHHHHHHCTTCEEEE
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHH-HHHHHhh---hhhhhcccccccHHHHHHHHhhcCCCcee
Confidence            46899999999999999999999988 8999999875432 2222222   2222222 1111  11     12369999


Q ss_pred             EEccC
Q 029640          102 YHLAC  106 (190)
Q Consensus       102 i~~ag  106 (190)
                      |++.|
T Consensus       103 ~D~vG  107 (182)
T d1v3va2         103 FDNVG  107 (182)
T ss_dssp             EESSC
T ss_pred             EEecC
Confidence            99986

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.22  E-value=0.00072  Score=46.10  Aligned_cols=65  Identities=23%  Similarity=0.303  Sum_probs=42.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |||.|.| .|.+|..+++.|.+. |++|++.+|+++..+. ..+   ...+....-++  +...++|+||-+.
T Consensus         1 MkI~iIG-~G~mG~~lA~~l~~~-g~~V~~~d~~~~~~~~-a~~---~~~~~~~~~~~--~~~~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVG-LGLIGASLAGDLRRR-GHYLIGVSRQQSTCEK-AVE---RQLVDEAGQDL--SLLQTAKIIFLCT   65 (165)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHHH-HHH---TTSCSEEESCG--GGGTTCSEEEECS
T ss_pred             CEEEEEe-ecHHHHHHHHHHHHC-CCEEEEEECCchHHHH-HHH---hhccceeeeec--ccccccccccccC
Confidence            6799998 799999999999998 8999999886433221 111   11111111121  2446789888654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.18  E-value=0.0034  Score=38.90  Aligned_cols=71  Identities=11%  Similarity=0.021  Sum_probs=46.4

Q ss_pred             CCCEEEEEcccchHH-HHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029640           31 SNMRILVTGGAGFIG-SHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG-~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      ..+++.+.| -|.+| +.|++.|.++ |++|...++........   +.. .++.....+-.+ ...+.|.||...++.
T Consensus         7 ~~~~ihfiG-igG~GMs~LA~~L~~~-G~~VsGSD~~~~~~~~~---L~~-~Gi~v~~g~~~~-~i~~~d~vV~S~AI~   78 (96)
T d1p3da1           7 RVQQIHFIG-IGGAGMSGIAEILLNE-GYQISGSDIADGVVTQR---LAQ-AGAKIYIGHAEE-HIEGASVVVVSSAIK   78 (96)
T ss_dssp             TCCEEEEET-TTSTTHHHHHHHHHHH-TCEEEEEESCCSHHHHH---HHH-TTCEEEESCCGG-GGTTCSEEEECTTSC
T ss_pred             hCCEEEEEE-ECHHHHHHHHHHHHhC-CCEEEEEeCCCChhhhH---HHH-CCCeEEECCccc-cCCCCCEEEECCCcC
Confidence            568899987 34444 7789999999 99999998864322222   222 245555443332 346789998887753

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.18  E-value=0.00022  Score=48.21  Aligned_cols=40  Identities=18%  Similarity=0.249  Sum_probs=35.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK   71 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~   71 (190)
                      .+++|.|.||.|.+|+.+++.|.+. |++|.+.+|+.....
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~-G~~V~~~d~~~~~~~   47 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRAS-GYPISILDREDWAVA   47 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTT-TCCEEEECTTCGGGH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHc-CCCcEeccccccccc
Confidence            5689999999999999999999999 899999998654433

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.0014  Score=42.96  Aligned_cols=70  Identities=19%  Similarity=0.299  Sum_probs=48.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCCcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF  112 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~~~  112 (190)
                      |||.|.|++|-.|+.+.+.+.+. ++++......                      + ....+.++|+||.+..+.    
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~-~~~l~~~id~----------------------~-~~~~~~~~DVvIDFS~p~----   52 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEK-GHELVLKVDV----------------------N-GVEELDSPDVVIDFSSPE----   52 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEET----------------------T-EEEECSCCSEEEECSCGG----
T ss_pred             CEEEEECCCCHHHHHHHHHHhcC-CCeEEEEECC----------------------C-cHHHhccCCEEEEecCHH----
Confidence            67999999999999999888777 6766543210                      0 012245689999886321    


Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHcCCeEEE
Q 029640          113 YKYNPVKTIKTNVIGTLNMLGLAKRVGARILL  144 (190)
Q Consensus       113 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~  144 (190)
                                    ++..+++.|.++++.+|.
T Consensus        53 --------------~~~~~l~~~~~~~~p~Vi   70 (128)
T d1vm6a3          53 --------------ALPKTVDLCKKYRAGLVL   70 (128)
T ss_dssp             --------------GHHHHHHHHHHHTCEEEE
T ss_pred             --------------HHHHHHHHHHhcCCCEEE
Confidence                          145688889888888663

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00023  Score=42.60  Aligned_cols=38  Identities=29%  Similarity=0.332  Sum_probs=32.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      ++.+++|+||+|.+|...++.+... |.+|+++.+++++
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~-G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGREST   68 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHc-CCeEEEEECCHHH
Confidence            5789999999999999999988887 8899988775543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.11  E-value=0.0021  Score=41.57  Aligned_cols=38  Identities=24%  Similarity=0.293  Sum_probs=33.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      ..++++|.| +|++|-+++..|.+. +.+|+++.+.+...
T Consensus        29 ~~~~vvIIG-gG~iG~E~A~~l~~~-g~~Vtli~~~~~~l   66 (121)
T d1d7ya2          29 PQSRLLIVG-GGVIGLELAATARTA-GVHVSLVETQPRLM   66 (121)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSSSTT
T ss_pred             cCCeEEEEC-cchhHHHHHHHhhcc-cceEEEEeeccccc
Confidence            468999999 899999999999999 89999998886543

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.09  E-value=0.00066  Score=46.65  Aligned_cols=68  Identities=12%  Similarity=0.185  Sum_probs=45.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      ++++|+|.| +|..+++++..|.+.+-.++.++.|+.+.... +....   ....+.    .....++|+|||+-..
T Consensus        16 ~~~~vlIlG-aGGaarai~~aL~~~g~~~I~I~nR~~~ka~~-L~~~~---~~~~~~----~~~~~~~DliINaTpi   83 (167)
T d1npya1          16 KNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVKTGQY-LAALY---GYAYIN----SLENQQADILVNVTSI   83 (167)
T ss_dssp             TTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHHHHHH-HHHHH---TCEEES----CCTTCCCSEEEECSST
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEecccHHHHHH-HHHhh---hhhhhh----cccccchhhheecccc
Confidence            568999999 69999999999999933589999886543332 22222   222221    2223568999998653

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.04  E-value=0.0013  Score=45.67  Aligned_cols=77  Identities=10%  Similarity=0.022  Sum_probs=51.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhh---hhhcCCceEEEeccccccc-----cCCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR---KWIGHPRFELIRHDVTEPL-----LIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~---~~~~~~~~~~~~~D~~~~~-----~~~~d~v  101 (190)
                      ..+++|+|.| +|..|++++..|.+.+..+++++.|+.+.......   .+...........|+.+..     ...+|+|
T Consensus        16 l~~k~vlIlG-aGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii   94 (182)
T d1vi2a1          16 IKGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL   94 (182)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEE
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhccccee
Confidence            4789999999 68889999999999955689999987665443221   1111222233334554432     3468999


Q ss_pred             EEccCC
Q 029640          102 YHLACP  107 (190)
Q Consensus       102 i~~ag~  107 (190)
                      ||+...
T Consensus        95 IN~Tp~  100 (182)
T d1vi2a1          95 TNGTKV  100 (182)
T ss_dssp             EECSST
T ss_pred             ccccCC
Confidence            999754

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00088  Score=45.86  Aligned_cols=95  Identities=17%  Similarity=0.336  Sum_probs=56.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEE-EcCCCCCC-hhhhhhhhcC--CceEEEeccccccccCCcCEEEEccCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNYFTGS-KDNLRKWIGH--PRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~-~~r~~~~~-~~~~~~~~~~--~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      .++|.|.|++|-+|+.+++.+.+..+.++.. +.|..... ......+...  ..+.. ..| .+.....+|+||-+.- 
T Consensus         4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~-~~~-~~~~~~~~DViIDFs~-   80 (162)
T d1diha1           4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV-QSS-LDAVKDDFDVFIDFTR-   80 (162)
T ss_dssp             BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE-ESC-STTTTTSCSEEEECSC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCcee-ecc-HHHHhcccceEEEecc-
Confidence            4789999999999999999999985655443 33332211 1111111111  11111 222 2344567999988862 


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEe
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS  146 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vS  146 (190)
                               |+        ++...++.|.++++.+|.=+
T Consensus        81 ---------p~--------~~~~~~~~a~~~~~~~ViGT  102 (162)
T d1diha1          81 ---------PE--------GTLNHLAFCRQHGKGMVIGT  102 (162)
T ss_dssp             ---------HH--------HHHHHHHHHHHTTCEEEECC
T ss_pred             ---------HH--------HHHHHHHHHHhccceeEEec
Confidence                     11        24567888888887777433

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.02  E-value=0.00075  Score=46.85  Aligned_cols=74  Identities=19%  Similarity=0.064  Sum_probs=47.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc----ccCCcCEEEEcc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP----LLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~----~~~~~d~vi~~a  105 (190)
                      .++.+|||+||+|.+|...++..... |.+|+++.+++++. +....+... .+.-...+..+.    .-.++|+||.+.
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~-~~~~~lGa~-~vi~~~~~~~~~~~~~~~~gvD~vid~v  106 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEH-DYLRVLGAK-EVLAREDVMAERIRPLDKQRWAAAVDPV  106 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCH-HHHHHTTCS-EEEECC---------CCSCCEEEEEECS
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHH-HHHHhcccc-eeeecchhHHHHHHHhhccCcCEEEEcC
Confidence            35788999999999999999998888 89999988865543 333333221 111111111110    123699999998


Q ss_pred             C
Q 029640          106 C  106 (190)
Q Consensus       106 g  106 (190)
                      |
T Consensus       107 g  107 (176)
T d1xa0a2         107 G  107 (176)
T ss_dssp             T
T ss_pred             C
Confidence            7

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.0016  Score=46.92  Aligned_cols=72  Identities=14%  Similarity=0.163  Sum_probs=49.1

Q ss_pred             cCCCEEEEEcc----------------cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecc----
Q 029640           30 QSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD----   89 (190)
Q Consensus        30 ~~~~~vlItG~----------------~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D----   89 (190)
                      +.|++|+||+|                +|-.|.+|++.+..+ |++|+++.-......        ...+..+...    
T Consensus         4 l~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~-Ga~V~li~g~~~~~~--------p~~~~~~~~~t~~~   74 (223)
T d1u7za_           4 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARR-GANVTLVSGPVSLPT--------PPFVKRVDVMTALE   74 (223)
T ss_dssp             TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHT-TCEEEEEECSCCCCC--------CTTEEEEECCSHHH
T ss_pred             cCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHc-CCchhhhhcccccCc--------ccccccceehhhHH
Confidence            47888999875                799999999999999 899888855333211        1234444332    


Q ss_pred             ccc---cccCCcCEEEEccCCCCC
Q 029640           90 VTE---PLLIEVDQIYHLACPASP  110 (190)
Q Consensus        90 ~~~---~~~~~~d~vi~~ag~~~~  110 (190)
                      +.+   ....+.|++|++|++.+.
T Consensus        75 m~~~~~~~~~~~D~~i~aAAvsDf   98 (223)
T d1u7za_          75 MEAAVNASVQQQNIFIGCAAVADY   98 (223)
T ss_dssp             HHHHHHHHGGGCSEEEECCBCCSE
T ss_pred             HHHHHHhhhccceeEeeeechhhh
Confidence            111   123579999999987653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.01  E-value=0.00028  Score=46.47  Aligned_cols=66  Identities=18%  Similarity=0.202  Sum_probs=48.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------CCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------~~~d~vi~~a  105 (190)
                      |+++|.| .|-+|+.+++.|.+. |++|.+++.++    +....+. ......+.+|.+++..      .++|.||-+.
T Consensus         1 k~~iIiG-~G~~G~~la~~L~~~-g~~vvvid~d~----~~~~~~~-~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~   72 (134)
T d2hmva1           1 KQFAVIG-LGRFGGSIVKELHRM-GHEVLAVDINE----EKVNAYA-SYATHAVIANATEENELLSLGIRNFEYVIVAI   72 (134)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHHHT-TCCCEEEESCH----HHHHHTT-TTCSEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHC-CCeEEEecCcH----HHHHHHH-HhCCcceeeecccchhhhccCCccccEEEEEc
Confidence            5688998 699999999999999 89999997743    3333332 2345677789888753      3588887765

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.99  E-value=0.0024  Score=45.03  Aligned_cols=32  Identities=38%  Similarity=0.504  Sum_probs=29.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      |+|.|.| .|++|..++..|++. |++|++++.+
T Consensus         1 MkI~ViG-lG~vGl~~a~~la~~-g~~V~g~D~n   32 (202)
T d1mv8a2           1 MRISIFG-LGYVGAVCAGCLSAR-GHEVIGVDVS   32 (202)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHT-TCEEEEECSC
T ss_pred             CEEEEEC-CCHhHHHHHHHHHhC-CCcEEEEeCC
Confidence            6899998 999999999999999 8999999864

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.98  E-value=0.0018  Score=44.66  Aligned_cols=70  Identities=13%  Similarity=0.041  Sum_probs=47.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc----------cCCcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----------LIEVD   99 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~----------~~~~d   99 (190)
                      .++.+|+|+||+|.+|...++.+... +.+++++.++++. .+.+...   .-...+  |-.++.          ..++|
T Consensus        24 ~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~-~~~l~~~---Ga~~vi--~~~~~~~~~~v~~~t~~~g~d   96 (183)
T d1pqwa_          24 SPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAK-REMLSRL---GVEYVG--DSRSVDFADEILELTDGYGVD   96 (183)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHH-HHHHHTT---CCSEEE--ETTCSTHHHHHHHHTTTCCEE
T ss_pred             CCCCEEEEECCCCCcccccchhhccc-cccceeeeccccc-ccccccc---cccccc--cCCccCHHHHHHHHhCCCCEE
Confidence            36789999999999999999999888 8898888775432 2223322   111222  222221          24699


Q ss_pred             EEEEccC
Q 029640          100 QIYHLAC  106 (190)
Q Consensus       100 ~vi~~ag  106 (190)
                      ++|.+.|
T Consensus        97 ~v~d~~g  103 (183)
T d1pqwa_          97 VVLNSLA  103 (183)
T ss_dssp             EEEECCC
T ss_pred             EEEeccc
Confidence            9999986

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=96.95  E-value=0.001  Score=45.75  Aligned_cols=72  Identities=19%  Similarity=0.206  Sum_probs=47.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEcc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~a  105 (190)
                      .+.+|+|+||+|.+|...++..... |.+|+++.++.++. +.+..+.. ..+ +..-|.....     -.++|+||.+.
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~-~~~~~lGa-d~v-i~~~~~~~~~~~~~~~~gvd~vid~v   98 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAA-DYLKQLGA-SEV-ISREDVYDGTLKALSKQQWQGAVDPV   98 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTH-HHHHHHTC-SEE-EEHHHHCSSCCCSSCCCCEEEEEESC
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHH-HHHHhhcc-cce-EeccchhchhhhcccCCCceEEEecC
Confidence            4567999999999999999998888 88999998865543 33333321 111 1112222221     13599999998


Q ss_pred             C
Q 029640          106 C  106 (190)
Q Consensus       106 g  106 (190)
                      |
T Consensus        99 g   99 (167)
T d1tt7a2          99 G   99 (167)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00019  Score=49.71  Aligned_cols=72  Identities=15%  Similarity=0.093  Sum_probs=48.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEe---cccccc-----ccCCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR---HDVTEP-----LLIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~---~D~~~~-----~~~~~d~v  101 (190)
                      .++.+|+|+||+|.+|..+++..... |.+|+++.+++++.+ ...++..   -+.+.   .|+.+.     .-.++|+|
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~-~~~~lGa---~~vi~~~~~d~~~~v~~~t~g~g~d~v  101 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQ-SALKAGA---WQVINYREEDLVERLKEITGGKKVRVV  101 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHH-HHHHHTC---SEEEETTTSCHHHHHHHHTTTCCEEEE
T ss_pred             CCCCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHH-HHHhcCC---eEEEECCCCCHHHHHHHHhCCCCeEEE
Confidence            35789999999999999999999888 899999988654432 2333321   12222   122211     12358999


Q ss_pred             EEccC
Q 029640          102 YHLAC  106 (190)
Q Consensus       102 i~~ag  106 (190)
                      |.+.|
T Consensus       102 ~d~~g  106 (179)
T d1qora2         102 YDSVG  106 (179)
T ss_dssp             EECSC
T ss_pred             EeCcc
Confidence            99986

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.002  Score=44.24  Aligned_cols=37  Identities=14%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      .++.+|+|+|++|.+|...++.+... |.+|+++.+++
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~   63 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTE   63 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSH
T ss_pred             CCCCEEEEEecccccccccccccccc-Ccccccccccc
Confidence            36789999999999999999988888 88999888754

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.88  E-value=0.0049  Score=42.10  Aligned_cols=66  Identities=11%  Similarity=0.178  Sum_probs=40.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +..||.|.| .|.+|+.+++.|.+..+.++..+..+......         .......+-......++|+|+.+..
T Consensus         2 ~kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---------~~~~~~~~~~~~~~~~~D~Vvi~tp   67 (170)
T d1f06a1           2 TNIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---------KTPVFDVADVDKHADDVDVLFLCMG   67 (170)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---------SSCEEEGGGGGGTTTTCSEEEECSC
T ss_pred             CcceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEeccccccc---------ccccccchhhhhhccccceEEEeCC
Confidence            456899999 89999999999988756666554433322211         1122222222233457999987764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.85  E-value=0.0023  Score=43.00  Aligned_cols=65  Identities=12%  Similarity=0.159  Sum_probs=43.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |+|.+.| .|.+|+++++.|++.+.+++.+.+|+++...    .+.....+... .|.  ++..+.|+||-+.
T Consensus         1 MkI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~----~l~~~~~~~~~-~~~--~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRGAEKRE----RLEKELGVETS-ATL--PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSSHHHHH----HHHHHTCCEEE-SSC--CCCCTTSEEEECS
T ss_pred             CEEEEEc-CcHHHHHHHHHHHHCCCCcEEEEeCChhHHH----Hhhhhcccccc-ccc--ccccccceEEEec
Confidence            6799998 7999999999999985589999988654332    22222233332 122  2345689888764

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00055  Score=46.93  Aligned_cols=72  Identities=13%  Similarity=0.067  Sum_probs=46.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccc---cccccCCcCEEEEccC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV---TEPLLIEVDQIYHLAC  106 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~d~vi~~ag  106 (190)
                      ..+.+|+|.|+ |.||...++.+... |.++++++++.++. +...++..   ...+...-   ......++|++|.+.|
T Consensus        29 ~~G~~VlI~Ga-G~vG~~a~qlak~~-Ga~~i~~~~~~~~~-~~a~~lGa---d~~i~~~~~~~~~~~~~~~D~vid~~g  102 (168)
T d1uufa2          29 GPGKKVGVVGI-GGLGHMGIKLAHAM-GAHVVAFTTSEAKR-EAAKALGA---DEVVNSRNADEMAAHLKSFDFILNTVA  102 (168)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESSGGGH-HHHHHHTC---SEEEETTCHHHHHTTTTCEEEEEECCS
T ss_pred             CCCCEEEEecc-chHHHHHHHHhhcc-cccchhhccchhHH-HHHhccCC---cEEEECchhhHHHHhcCCCceeeeeee
Confidence            47899999985 88999999988888 78888887765532 23333321   12222111   1122346999999987


Q ss_pred             C
Q 029640          107 P  107 (190)
Q Consensus       107 ~  107 (190)
                      .
T Consensus       103 ~  103 (168)
T d1uufa2         103 A  103 (168)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.78  E-value=0.0024  Score=41.12  Aligned_cols=36  Identities=28%  Similarity=0.198  Sum_probs=32.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      ++++|.| +|+||-.++..|.+. |.+|+++.+.+...
T Consensus        23 ~~i~IiG-~G~ig~E~A~~l~~~-G~~Vtiv~~~~~ll   58 (119)
T d3lada2          23 GKLGVIG-AGVIGLELGSVWARL-GAEVTVLEAMDKFL   58 (119)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSSSSS
T ss_pred             CeEEEEC-CChHHHHHHHHHHHc-CCceEEEEeecccC
Confidence            7899999 899999999999999 89999998876543

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.77  E-value=0.0035  Score=39.99  Aligned_cols=37  Identities=24%  Similarity=0.239  Sum_probs=32.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK   71 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~   71 (190)
                      ++++|.| +|++|-.++..|.+. |.+|+++.|.+...+
T Consensus        22 ~~vvIiG-gG~~G~E~A~~l~~~-g~~Vtlve~~~~il~   58 (115)
T d1lvla2          22 QHLVVVG-GGYIGLELGIAYRKL-GAQVSVVEARERILP   58 (115)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHH-TCEEEEECSSSSSST
T ss_pred             CeEEEEC-CCHHHHHHHHHHhhc-ccceEEEeeeccccc
Confidence            7899999 899999999999999 899999988765443

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.75  E-value=0.016  Score=35.20  Aligned_cols=70  Identities=17%  Similarity=0.091  Sum_probs=44.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEec-cccccccCCcCEEEEccCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +|||.++|-+|-==+.|++.|.++ |+.|...++........+.    ..++.+... |.  ....+.|.||...++.
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~-G~~VsGSD~~~~~~t~~L~----~~Gi~i~~gh~~--~~i~~~d~vV~SsAI~   71 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSN-GNDVYGSNIEETERTAYLR----KLGIPIFVPHSA--DNWYDPDLVIKTPAVR   71 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECSSCCHHHHHHH----HTTCCEESSCCT--TSCCCCSEEEECTTCC
T ss_pred             CcEEEEEeECHHHHHHHHHHHHhC-CCeEEEEeCCCChhHHHHH----HCCCeEEeeecc--cccCCCCEEEEecCcC
Confidence            377888874444335688888998 9999999986433333332    224544432 22  2235689999888754

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.69  E-value=0.0035  Score=40.46  Aligned_cols=37  Identities=24%  Similarity=0.336  Sum_probs=32.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      ..++++|.| +|++|-.++..|.+. |.+|+++.|.+..
T Consensus        31 ~~~~vvIiG-gG~iG~E~A~~l~~~-g~~Vtlv~~~~~l   67 (122)
T d1xhca2          31 NSGEAIIIG-GGFIGLELAGNLAEA-GYHVKLIHRGAMF   67 (122)
T ss_dssp             HHSEEEEEE-CSHHHHHHHHHHHHT-TCEEEEECSSSCC
T ss_pred             cCCcEEEEC-CcHHHHHHHHHhhcc-cceEEEEeccccc
Confidence            348899999 899999999999999 8999999887654

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.65  E-value=0.019  Score=37.67  Aligned_cols=76  Identities=14%  Similarity=0.173  Sum_probs=50.2

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCCcc
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF  112 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~~~  112 (190)
                      ||.|.|++|-.|+.+++.+.+..+.++... ++.. .                    +......++|+||.+.-+..   
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~-~--------------------~~~~~~~~~DvvIDFS~p~~---   56 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD-P--------------------LSLLTDGNTEVVIDFTHPDV---   56 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC-C--------------------THHHHTTTCSEEEECCCTTT---
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC-c--------------------hhhhccccCCEEEEcccHHH---
Confidence            689999999999999999988856665543 2211 0                    01112246899998863211   


Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029640          113 YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       113 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                                     +...++.|.++++.+|. +|++
T Consensus        57 ---------------~~~~~~~~~~~~~~~Vi-GTTG   77 (135)
T d1yl7a1          57 ---------------VMGNLEFLIDNGIHAVV-GTTG   77 (135)
T ss_dssp             ---------------HHHHHHHHHHTTCEEEE-CCCC
T ss_pred             ---------------HHHHHHHHHhcCCCEEE-eccc
Confidence                           34678888888887764 4433

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.62  E-value=0.0049  Score=40.42  Aligned_cols=38  Identities=21%  Similarity=0.399  Sum_probs=33.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      ..++++|.| +|++|..++..|.+. +.+|.++.+.+...
T Consensus        34 ~~k~v~VIG-gG~iG~E~A~~l~~~-g~~Vtvie~~~~~l   71 (133)
T d1q1ra2          34 ADNRLVVIG-GGYIGLEVAATAIKA-NMHVTLLDTAARVL   71 (133)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSSSTT
T ss_pred             cCCEEEEEC-CchHHHHHHHHHHhh-Ccceeeeeeccccc
Confidence            568999999 899999999999999 89999998876644

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.55  E-value=0.0086  Score=40.56  Aligned_cols=37  Identities=27%  Similarity=0.152  Sum_probs=30.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ..+.+|+|+| +|.+|...++.+... |.+|+++++++.
T Consensus        25 ~~g~~vlV~G-~G~vG~~~~~~ak~~-Ga~vi~v~~~~~   61 (170)
T d1e3ja2          25 QLGTTVLVIG-AGPIGLVSVLAAKAY-GAFVVCTARSPR   61 (170)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHH
T ss_pred             CCCCEEEEEc-ccccchhhHhhHhhh-cccccccchHHH
Confidence            3678999998 799999999988887 789999987544

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.0041  Score=42.94  Aligned_cols=71  Identities=18%  Similarity=0.121  Sum_probs=45.8

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc--c--cCCcCEEEEccC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP--L--LIEVDQIYHLAC  106 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~--~--~~~~d~vi~~ag  106 (190)
                      .+.+|+|+||+|.+|...++..... |.+|+++.+++++. +.+..+.   -...+..+-.+.  .  ....|.+|.+.|
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~-~~~~~lG---ad~vi~~~~~~~~~~l~~~~~~~vvD~Vg  105 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTH-EYLKSLG---ASRVLPRDEFAESRPLEKQVWAGAIDTVG  105 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGH-HHHHHHT---EEEEEEGGGSSSCCSSCCCCEEEEEESSC
T ss_pred             CCCcEEEEEccccchHHHHHHHHHc-CCCeEEEecchhHH-HHHHhhc---cccccccccHHHHHHHHhhcCCeeEEEcc
Confidence            3458999999999999999999888 89999988865543 2233332   122222221111  1  123688888875

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.53  E-value=0.0055  Score=41.89  Aligned_cols=35  Identities=20%  Similarity=0.105  Sum_probs=31.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      +|++.|+| +|.+|..++..|.++ |++|.+.+|+++
T Consensus         1 sk~iaIiG-aG~~G~~~A~~l~~~-G~~V~~~~r~~~   35 (184)
T d1bg6a2           1 SKTYAVLG-LGNGGHAFAAYLALK-GQSVLAWDIDAQ   35 (184)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             CCEEEEEC-ccHHHHHHHHHHHHC-CCEEEEEECCHH
Confidence            37999999 699999999999999 899999998643

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.52  E-value=0.0014  Score=45.36  Aligned_cols=75  Identities=15%  Similarity=0.121  Sum_probs=46.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEeccccccccCCcCEEEEccC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      .++++|+|.| +|..++.++..|.+. + +|.++.|+.+........+.   .......+..+-.+......|++||+..
T Consensus        16 ~~~k~vlIlG-aGG~arai~~aL~~~-~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp   92 (177)
T d1nvta1          16 VKDKNIVIYG-AGGAARAVAFELAKD-N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP   92 (177)
T ss_dssp             CCSCEEEEEC-CSHHHHHHHHHHTSS-S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             cCCCEEEEEC-CcHHHHHHHHHHccc-c-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence            4789999999 788899999998665 4 89999997555443322221   1111111222222233456899999875


Q ss_pred             C
Q 029640          107 P  107 (190)
Q Consensus       107 ~  107 (190)
                      .
T Consensus        93 ~   93 (177)
T d1nvta1          93 I   93 (177)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.44  E-value=0.0035  Score=42.73  Aligned_cols=73  Identities=18%  Similarity=0.047  Sum_probs=47.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEec-cc---cccccCCcCEEEEcc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DV---TEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-D~---~~~~~~~~d~vi~~a  105 (190)
                      ..+.+|+|.|+ |.+|...++.+... |.+|++++++++..+ ..+++. ..  ..+.. +.   .......+|++|.+.
T Consensus        26 ~~g~~vlI~Ga-G~vG~~a~q~ak~~-G~~vi~~~~~~~k~~-~a~~lG-a~--~~i~~~~~~~~~~~~~~~~d~vi~~~   99 (168)
T d1piwa2          26 GPGKKVGIVGL-GGIGSMGTLISKAM-GAETYVISRSSRKRE-DAMKMG-AD--HYIATLEEGDWGEKYFDTFDLIVVCA   99 (168)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHH-TCEEEEEESSSTTHH-HHHHHT-CS--EEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred             CCCCEEEEECC-CCcchhHHHHhhhc-cccccccccchhHHH-HhhccC-Cc--EEeeccchHHHHHhhhcccceEEEEe
Confidence            36799999995 99999999988888 789999988665433 333332 11  22221 11   112234689999987


Q ss_pred             CCC
Q 029640          106 CPA  108 (190)
Q Consensus       106 g~~  108 (190)
                      +..
T Consensus       100 ~~~  102 (168)
T d1piwa2         100 SSL  102 (168)
T ss_dssp             SCS
T ss_pred             cCC
Confidence            643

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.42  E-value=0.001  Score=45.37  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=31.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      |++|.+.| .|.+|+.+++.|++. |++|.+.+|+...
T Consensus         1 M~kIg~IG-lG~MG~~iA~~L~~~-g~~v~~~d~~~~~   36 (162)
T d3cuma2           1 MKQIAFIG-LGHMGAPMATNLLKA-GYLLNVFDLVQSA   36 (162)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHT-TCEEEEECSSHHH
T ss_pred             CCEEEEEE-EHHHHHHHHHHHHHC-CCeEEEEECchhh
Confidence            57899998 999999999999999 8999999886443

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.38  E-value=0.00051  Score=48.05  Aligned_cols=33  Identities=21%  Similarity=0.098  Sum_probs=27.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY   66 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~   66 (190)
                      .+|+|+||+|.+|+..++..... |. .|+++.++
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~-Ga~~vi~~~~~   65 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLL-GCSRVVGICGT   65 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHT-TCSEEEEEESS
T ss_pred             CEEEEECCCchhhHHHHHHHHHc-CCcceecccch
Confidence            78999999999999999998888 65 55555553

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.36  E-value=0.00084  Score=45.89  Aligned_cols=39  Identities=18%  Similarity=0.161  Sum_probs=34.5

Q ss_pred             ccccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        27 ~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ..++.+|+++|.| .|+||+.+++.|... |.+|.+....+
T Consensus        19 ~~~l~Gk~v~V~G-yG~iG~g~A~~~rg~-G~~V~v~e~dp   57 (163)
T d1li4a1          19 DVMIAGKVAVVAG-YGDVGKGCAQALRGF-GARVIITEIDP   57 (163)
T ss_dssp             CCCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCH
T ss_pred             CceecCCEEEEec-cccccHHHHHHHHhC-CCeeEeeeccc
Confidence            4456899999999 999999999999999 89999997743

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.34  E-value=0.0084  Score=40.64  Aligned_cols=39  Identities=23%  Similarity=0.239  Sum_probs=32.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ..+.+|+|+|++|.+|...++.+...+...|+++.++++
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~   64 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREE   64 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHH
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchh
Confidence            367899999999999999999999984478888887543

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.32  E-value=0.0021  Score=43.14  Aligned_cols=64  Identities=14%  Similarity=0.121  Sum_probs=43.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |||.|.| .|.+|+.+++.|+++ |++|++.++...........-.   .+    .+-.++....+|+||-+.
T Consensus         1 MkIgiIG-~G~mG~~ia~~l~~~-g~~v~~~~~~~~~~~~~~~~~~---~~----~~~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIG-FGEVAQTLASRLRSR-GVEVVTSLEGRSPSTIERARTV---GV----TETSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHT-TCEEEECCTTCCHHHHHHHHHH---TC----EECCHHHHHTSSEEEECS
T ss_pred             CEEEEEc-HHHHHHHHHHHHHHC-CCeEEEEcCchhHHHHHhhhcc---cc----cccHHHHHhhcCeEEEEe
Confidence            6799998 899999999999999 8999888775544332222111   11    122233456789888776

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.25  E-value=0.00083  Score=45.73  Aligned_cols=64  Identities=17%  Similarity=0.267  Sum_probs=42.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |+|.|.| .|.+|+.+++.|++. |++|++.+|+++...    .+... ....  ++-..+...++|+||-|.
T Consensus         1 MkIgiIG-lG~MG~~~A~~L~~~-G~~V~~~d~~~~~~~----~~~~~-~~~~--~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIG-LGIMGKPMSKNLLKA-GYSLVVSDRNPEAIA----DVIAA-GAET--ASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHT-TCEEEEECSCHHHHH----HHHHT-TCEE--CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEe-hhHHHHHHHHHHHHC-CCeEEEEeCCcchhH----HHHHh-hhhh--cccHHHHHhCCCeEEEEc
Confidence            6799999 899999999999998 899999988544332    22211 1111  222223345678777765

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0069  Score=40.44  Aligned_cols=70  Identities=16%  Similarity=0.229  Sum_probs=51.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------CCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------~~~d~vi~~a  105 (190)
                      .+++|.| .|-+|+.+++.|.++ +.++.++...++.......... ..++.++.+|.+++..      .+.+.||-+.
T Consensus         4 nHiII~G-~g~~g~~l~~~L~~~-~~~v~vId~d~~~~~~~~~~~~-~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~   79 (153)
T d1id1a_           4 DHFIVCG-HSILAINTILQLNQR-GQNVTVISNLPEDDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             SCEEEEC-CSHHHHHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHc-CCCEEEEeccchhHHHHHHHhh-cCCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence            3688898 699999999999999 8888888765433223333322 3478999999998753      3588888775

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=96.23  E-value=0.0038  Score=43.37  Aligned_cols=43  Identities=12%  Similarity=0.027  Sum_probs=34.2

Q ss_pred             CCCEEEE-EcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh
Q 029640           31 SNMRILV-TGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL   74 (190)
Q Consensus        31 ~~~~vlI-tG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~   74 (190)
                      ++.+++| +||+|.+|...++..... |.+|+++.|+.+..++..
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~   71 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVV   71 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHH
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhc-CCeEEEEEecccccchHH
Confidence            5667777 589999999999999888 889998888766555443

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0068  Score=49.01  Aligned_cols=105  Identities=10%  Similarity=0.137  Sum_probs=65.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +.+.+|+|.| .|.+|.++++.|+..|-..+++++...-...+.                      +.++-+..++..+.
T Consensus        23 L~~s~VlvvG-~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~  101 (529)
T d1yova1          23 LESAHVCLIN-ATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVE  101 (529)
T ss_dssp             HHHCEEEECC-CSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEES
T ss_pred             HhCCCEEEEC-CCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEc
Confidence            3568999999 588999999999999446888876543222111                      11111112444454


Q ss_pred             ccccc------cccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029640           88 HDVTE------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        88 ~D~~~------~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      .+..+      ..+.++|+||.+..         +        ......+-+.|.++++.+|.+++.+.||
T Consensus       102 ~~~~~~~~~~~~~~~~~dvVv~~~~---------~--------~~~~~~l~~~c~~~~ip~i~~~~~G~~G  155 (529)
T d1yova1         102 ESPENLLDNDPSFFCRFTVVVATQL---------P--------ESTSLRLADVLWNSQIPLLICRTYGLVG  155 (529)
T ss_dssp             SCHHHHHHSCGGGGGGCSEEEEESC---------C--------HHHHHHHHHHHHHHTCCEEEEEEETTEE
T ss_pred             CCchhhhhhHHHHhcCCCEEEECCC---------C--------HHHHHHHHHHHHHcCCCEEEEeccCCEE
Confidence            44332      12346899987752         1        1122457788888899999998877666

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.14  E-value=0.0051  Score=39.23  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=32.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      ++++|.| +|++|..++..|.+. |.+|+++.|.+...
T Consensus        23 ~~v~IiG-gG~ig~E~A~~l~~~-G~~Vtlve~~~~il   58 (117)
T d1ebda2          23 KSLVVIG-GGYIGIELGTAYANF-GTKVTILEGAGEIL   58 (117)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSSSSS
T ss_pred             CeEEEEC-CCccceeeeeeeccc-ccEEEEEEecceec
Confidence            7899999 899999999999999 89999998876543

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.016  Score=41.72  Aligned_cols=37  Identities=19%  Similarity=0.269  Sum_probs=31.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      +.+.+|+|.| .|.+|.+++..|+..|-.++.+++.+.
T Consensus        28 L~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          28 LKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HhCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            3678999999 889999999999999546888886553

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.12  E-value=0.0056  Score=39.47  Aligned_cols=37  Identities=22%  Similarity=0.231  Sum_probs=32.7

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK   71 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~   71 (190)
                      ++++|.| +|+||..++..|.+. |.+|+++.+.+...+
T Consensus        24 ~~~vIiG-~G~ig~E~A~~l~~l-G~~Vtii~~~~~~l~   60 (122)
T d1v59a2          24 KRLTIIG-GGIIGLEMGSVYSRL-GSKVTVVEFQPQIGA   60 (122)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSSSSSS
T ss_pred             CeEEEEC-CCchHHHHHHHHHhh-CcceeEEEeccccch
Confidence            7899999 899999999999999 999999988765443

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.10  E-value=0.0063  Score=39.26  Aligned_cols=36  Identities=22%  Similarity=0.401  Sum_probs=31.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ..++++|.| +|++|..++..|.+. |.+|+++.+.+.
T Consensus        29 ~~k~vvViG-gG~iG~E~A~~l~~~-g~~Vtlie~~~~   64 (123)
T d1nhpa2          29 EVNNVVVIG-SGYIGIEAAEAFAKA-GKKVTVIDILDR   64 (123)
T ss_dssp             TCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred             CCCEEEEEC-ChHHHHHHHHHhhcc-ceEEEEEEecCc
Confidence            468999999 899999999999999 899999987654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0066  Score=38.72  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=32.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      ++++|.| +|++|..++..|.+. |.+|+++.|.+...
T Consensus        22 ~~vvIiG-gG~ig~E~A~~l~~~-G~~Vtlve~~~~~l   57 (116)
T d1gesa2          22 ERVAVVG-AGYIGVELGGVINGL-GAKTHLFEMFDAPL   57 (116)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSSSSS
T ss_pred             CEEEEEC-CChhhHHHHHHhhcc-ccEEEEEeecchhh
Confidence            7899999 899999999999999 89999999876544

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.95  E-value=0.011  Score=40.69  Aligned_cols=32  Identities=38%  Similarity=0.478  Sum_probs=29.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      |+|.|.| +|..|.+++..|.+. +++|.+..|.
T Consensus         1 MkI~ViG-aG~~GtalA~~la~~-g~~V~l~~r~   32 (180)
T d1txga2           1 MIVSILG-AGAMGSALSVPLVDN-GNEVRIWGTE   32 (180)
T ss_dssp             CEEEEES-CCHHHHHHHHHHHHH-CCEEEEECCG
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEEec
Confidence            7899999 799999999999998 8999998874

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.93  E-value=0.014  Score=40.04  Aligned_cols=37  Identities=19%  Similarity=0.173  Sum_probs=30.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~   68 (190)
                      ..+.+|+|+|+ |.+|...++.+... |. +|++++++++
T Consensus        27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~-Ga~~Vi~~~~~~~   64 (182)
T d1vj0a2          27 FAGKTVVIQGA-GPLGLFGVVIARSL-GAENVIVIAGSPN   64 (182)
T ss_dssp             CBTCEEEEECC-SHHHHHHHHHHHHT-TBSEEEEEESCHH
T ss_pred             CCCCEEEEECC-Cccchhheeccccc-ccccccccccccc
Confidence            36789999995 89999999999888 65 7899887544

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.92  E-value=0.016  Score=40.26  Aligned_cols=32  Identities=41%  Similarity=0.561  Sum_probs=26.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      |+|.|.| .|++|..++..| .. |++|++++-++
T Consensus         1 MkI~ViG-lG~vGl~~a~~~-a~-g~~V~g~Din~   32 (196)
T d1dlja2           1 MKIAVAG-SGYVGLSLGVLL-SL-QNEVTIVDILP   32 (196)
T ss_dssp             CEEEEEC-CSHHHHHHHHHH-TT-TSEEEEECSCH
T ss_pred             CEEEEEC-CChhHHHHHHHH-HC-CCcEEEEECCH
Confidence            6899998 999999998655 56 89999997643

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.90  E-value=0.0096  Score=37.97  Aligned_cols=38  Identities=5%  Similarity=-0.041  Sum_probs=33.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      .+++++|.| +|++|..++..|... +.+|.++.|.+...
T Consensus        21 ~~~~vvVvG-gG~ig~E~A~~l~~~-g~~vt~i~~~~~~l   58 (121)
T d1mo9a2          21 PGSTVVVVG-GSKTAVEYGCFFNAT-GRRTVMLVRTEPLK   58 (121)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCTTT
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhc-chhheEeeccchhh
Confidence            468999999 899999999999998 89999998876543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.88  E-value=0.0075  Score=38.58  Aligned_cols=37  Identities=14%  Similarity=0.191  Sum_probs=32.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      .++++|.| +|++|-+++..|... |.+|+++.|.+...
T Consensus        22 p~~v~IiG-gG~iG~E~A~~l~~~-g~~Vtlv~~~~~il   58 (117)
T d1onfa2          22 SKKIGIVG-SGYIAVELINVIKRL-GIDSYIFARGNRIL   58 (117)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHTT-TCEEEEECSSSSSC
T ss_pred             CCEEEEEC-CchHHHHHHHHHHhc-cccceeeehhcccc
Confidence            47899999 899999999999999 89999999876543

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0093  Score=38.52  Aligned_cols=36  Identities=17%  Similarity=0.155  Sum_probs=32.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      ++++|.| +|+||..++..|... |.+|+++.|.+...
T Consensus        23 k~vvIvG-gG~iG~E~A~~l~~~-G~~Vtlv~~~~~~l   58 (125)
T d3grsa2          23 GRSVIVG-AGYIAVEMAGILSAL-GSKTSLMIRHDKVL   58 (125)
T ss_dssp             SEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSSSSC
T ss_pred             CEEEEEc-CCccHHHHHHHHhcC-CcEEEEEeeccccc
Confidence            7899999 899999999999999 89999999976544

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.86  E-value=0.024  Score=35.83  Aligned_cols=63  Identities=17%  Similarity=0.192  Sum_probs=46.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIY  102 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi  102 (190)
                      ...||.|.| +|.+|+-++.+..+. |.++++++.++......+       .-.++.+|..|.+.       .++|+|.
T Consensus        10 ~~~kigIlG-gGQL~rMla~aA~~l-G~~v~v~d~~~~~PA~~v-------a~~~i~~~~~d~~~l~~~~~~~~~DviT   79 (111)
T d1kjqa2          10 AATRVMLLG-SGELGKEVAIECQRL-GVEVIAVDRYADAPAMHV-------AHRSHVINMLDGDALRRVVELEKPHYIV   79 (111)
T ss_dssp             TCCEEEEES-CSHHHHHHHHHHHTT-TCEEEEEESSTTCGGGGG-------SSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCCEEEEEe-CCHHHHHHHHHHHHC-CCEEEEEcCCCCCchhhc-------CCeEEECCCCCHHHHHHHHHhhCCceEE
Confidence            346899999 899999999999999 899999987655433222       23667788887642       2468884

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.85  E-value=0.0021  Score=44.94  Aligned_cols=38  Identities=24%  Similarity=0.173  Sum_probs=32.6

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ++.|++|.|.| +|..|.+++..|.+. +++|.+..|+++
T Consensus         4 ~~~m~KI~ViG-aG~wGtAlA~~La~~-g~~V~l~~r~~~   41 (189)
T d1n1ea2           4 LLYLNKAVVFG-SGAFGTALAMVLSKK-CREVCVWHMNEE   41 (189)
T ss_dssp             CCCEEEEEEEC-CSHHHHHHHHHHHTT-EEEEEEECSCHH
T ss_pred             cceeceEEEEC-CCHHHHHHHHHHHHc-CCeEEEEEecHH
Confidence            45667899999 899999999999998 899999988543

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.81  E-value=0.04  Score=37.89  Aligned_cols=39  Identities=18%  Similarity=0.124  Sum_probs=34.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      +.++++.|.| .|-||+.+++.+..- |.+|.+.+|.....
T Consensus        40 l~gk~vgIiG-~G~IG~~va~~l~~~-g~~v~~~d~~~~~~   78 (181)
T d1qp8a1          40 IQGEKVAVLG-LGEIGTRVGKILAAL-GAQVRGFSRTPKEG   78 (181)
T ss_dssp             CTTCEEEEES-CSTHHHHHHHHHHHT-TCEEEEECSSCCCS
T ss_pred             ccCceEEEec-cccccccceeeeecc-cccccccccccccc
Confidence            4789999999 899999999999998 89999998875443

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.81  E-value=0.0096  Score=40.54  Aligned_cols=43  Identities=12%  Similarity=0.198  Sum_probs=35.9

Q ss_pred             ccccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        27 ~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      ...+.|++++|.|.+..+|+-++..|.++ +..|+++.+.....
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~-gatVt~~h~~t~~l   74 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLA-GCTTTVTHRFTKNL   74 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTT-TCEEEEECSSCSCH
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHh-hccccccccccchh
Confidence            33468999999999999999999999998 88998887654443

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.79  E-value=0.0012  Score=44.53  Aligned_cols=65  Identities=20%  Similarity=0.288  Sum_probs=42.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      ||+.+.| +|-+|+++++.|++. ++++++..|+.+.......++    ++... .|. ++...+.|+||-+.
T Consensus         1 MkIg~IG-~G~mG~al~~~l~~~-~~~i~v~~r~~~~~~~l~~~~----g~~~~-~~~-~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIG-VGKMASAIIKGLKQT-PHELIISGSSLERSKEIAEQL----ALPYA-MSH-QDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHTTS-SCEEEEECSSHHHHHHHHHHH----TCCBC-SSH-HHHHHTCSEEEECS
T ss_pred             CEEEEEe-ccHHHHHHHHHHHhC-CCeEEEEcChHHhHHhhcccc----ceeee-chh-hhhhhccceeeeec
Confidence            6799998 999999999999988 899999988644332221211    11111 111 22345688888765

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.78  E-value=0.0079  Score=38.75  Aligned_cols=37  Identities=27%  Similarity=0.284  Sum_probs=33.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK   71 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~   71 (190)
                      ++++|.| +|+||..++..|.+. |.+|+++.|.+...+
T Consensus        26 ~~~viiG-~G~iglE~A~~~~~~-G~~Vtvi~~~~~~l~   62 (123)
T d1dxla2          26 KKLVVIG-AGYIGLEMGSVWGRI-GSEVTVVEFASEIVP   62 (123)
T ss_dssp             SEEEESC-CSHHHHHHHHHHHHH-TCEEEEECSSSSSST
T ss_pred             CeEEEEc-cchHHHHHHHHHHhc-CCeEEEEEEccccCc
Confidence            7899999 899999999999999 899999988765543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.69  E-value=0.029  Score=38.06  Aligned_cols=73  Identities=16%  Similarity=0.088  Sum_probs=46.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEe-cccccc--------ccCCcCE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR-HDVTEP--------LLIEVDQ  100 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~D~~~~--------~~~~~d~  100 (190)
                      ..+.+|+|.|+ |.+|...+..+...+...|+++++++++.... .+.   ...+.+. .+..+.        ...++|+
T Consensus        27 k~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a-~~~---Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~  101 (176)
T d2jhfa2          27 TQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKA-KEV---GATECVNPQDYKKPIQEVLTEMSNGGVDF  101 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH-HHT---TCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHH-HHh---CCeeEEecCCchhHHHHHHHHHhcCCCCE
Confidence            36789999997 66999999999998557999998865543322 221   1122221 222221        1236999


Q ss_pred             EEEccCC
Q 029640          101 IYHLACP  107 (190)
Q Consensus       101 vi~~ag~  107 (190)
                      +|.+.|.
T Consensus       102 vid~~G~  108 (176)
T d2jhfa2         102 SFEVIGR  108 (176)
T ss_dssp             EEECSCC
T ss_pred             EEecCCc
Confidence            9999873

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.67  E-value=0.006  Score=43.02  Aligned_cols=68  Identities=18%  Similarity=0.232  Sum_probs=44.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +.+++|.|-| .|-+|+++++.|.+. |.+|++.+.+.    ..+...... ....  .+..+....++|+++=||.
T Consensus        25 L~gk~v~IqG-~G~VG~~~A~~L~~~-Gakvvv~d~d~----~~~~~~~~~-g~~~--~~~~~~~~~~~DI~iPcA~   92 (201)
T d1c1da1          25 LDGLTVLVQG-LGAVGGSLASLAAEA-GAQLLVADTDT----ERVAHAVAL-GHTA--VALEDVLSTPCDVFAPCAM   92 (201)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCH----HHHHHHHHT-TCEE--CCGGGGGGCCCSEEEECSC
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEecchH----HHHHHHHhh-cccc--cCccccccccceeeecccc
Confidence            5889999998 999999999999999 89998876532    222222111 1222  2222333456888887764

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.019  Score=39.22  Aligned_cols=43  Identities=16%  Similarity=0.168  Sum_probs=36.4

Q ss_pred             ccccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        27 ~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      ...+.|++++|.|.+.-+|+-++..|.++ +..|.++.+.....
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~-gatVt~~~~~t~~l   76 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWN-NATVTTCHSKTAHL   76 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTCSSH
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhc-cCceEEEecccccH
Confidence            33468999999999999999999999999 89999987754443

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.57  E-value=0.03  Score=38.01  Aligned_cols=72  Identities=13%  Similarity=0.047  Sum_probs=44.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-------ccCCcCEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-------LLIEVDQIY  102 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-------~~~~~d~vi  102 (190)
                      ..+.+|+|.|+ |.+|...++.+...+...|++.++++.+. +..+++.   ..+++..+-.+.       ...++|+||
T Consensus        27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~-~~a~~~G---a~~~i~~~~~~~~~~i~~~t~gg~D~vi  101 (174)
T d1f8fa2          27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRL-ELAKQLG---ATHVINSKTQDPVAAIKEITDGGVNFAL  101 (174)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHHHHT---CSEEEETTTSCHHHHHHHHTTSCEEEEE
T ss_pred             CCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHH-HHHHHcC---CeEEEeCCCcCHHHHHHHHcCCCCcEEE
Confidence            46789999995 99999999999888445666666543221 2222221   223333222211       113589999


Q ss_pred             EccC
Q 029640          103 HLAC  106 (190)
Q Consensus       103 ~~ag  106 (190)
                      .+.|
T Consensus       102 d~~G  105 (174)
T d1f8fa2         102 ESTG  105 (174)
T ss_dssp             ECSC
T ss_pred             EcCC
Confidence            9987

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.074  Score=41.54  Aligned_cols=75  Identities=15%  Similarity=0.121  Sum_probs=48.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh----------------------hhhhcCCceEEEe
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----------------------RKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~----------------------~~~~~~~~~~~~~   87 (190)
                      +.+.+|+|.| .|.||.++++.|+..|-.++.+++.+.-...+.-                      ..+-+..++....
T Consensus        35 l~~~kVlvvG-~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~  113 (426)
T d1yovb1          35 LDTCKVLVIG-AGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF  113 (426)
T ss_dssp             HHHCCEEEEC-SSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred             HhcCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence            4678999999 5779999999999994458888866532222211                      1111223555655


Q ss_pred             cccccc---ccCCcCEEEEcc
Q 029640           88 HDVTEP---LLIEVDQIYHLA  105 (190)
Q Consensus        88 ~D~~~~---~~~~~d~vi~~a  105 (190)
                      .++.+.   .+.++|+||.+.
T Consensus       114 ~~i~~~~~~~~~~~DlVi~~~  134 (426)
T d1yovb1         114 NKIQDFNDTFYRQFHIIVCGL  134 (426)
T ss_dssp             SCGGGBCHHHHTTCSEEEECC
T ss_pred             ccccchHHHHHHhcchheecc
Confidence            555443   245799999886

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.55  E-value=0.023  Score=35.45  Aligned_cols=36  Identities=19%  Similarity=0.105  Sum_probs=27.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      .++|+|+|.| +|.-|..++..|.+...+.++...|.
T Consensus        30 f~gK~VlVVG-~g~Sa~dia~~l~~~ak~v~~~~~r~   65 (107)
T d2gv8a2          30 FVGESVLVVG-GASSANDLVRHLTPVAKHPIYQSLLG   65 (107)
T ss_dssp             GTTCCEEEEC-SSHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred             cCCCeEEEEC-CCCCHHHHHHHHHHhcCEEEEEEecC
Confidence            4889999999 88999999999998833444444443

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.53  E-value=0.0031  Score=44.44  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=32.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      +.+++|.|.| .|.||+.+++.|..- |.+|++.++..
T Consensus        41 l~gk~vgIiG-~G~IG~~va~~l~~f-g~~V~~~d~~~   76 (197)
T d1j4aa1          41 VRDQVVGVVG-TGHIGQVFMQIMEGF-GAKVITYDIFR   76 (197)
T ss_dssp             GGGSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSC
T ss_pred             ccCCeEEEec-ccccchhHHHhHhhh-cccccccCccc
Confidence            4789999999 999999999999888 89999987653

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=95.50  E-value=0.014  Score=37.68  Aligned_cols=38  Identities=18%  Similarity=0.177  Sum_probs=33.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK   71 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~   71 (190)
                      .++++|.| +|+||..++..|... |.+|+++.+.+...+
T Consensus        26 p~~vvIiG-gG~IG~E~A~~~~~~-G~~Vtive~~~~il~   63 (125)
T d1ojta2          26 PGKLLIIG-GGIIGLEMGTVYSTL-GSRLDVVEMMDGLMQ   63 (125)
T ss_dssp             CSEEEEES-CSHHHHHHHHHHHHH-TCEEEEECSSSSSST
T ss_pred             CCeEEEEC-CCHHHHHHHHHhhcC-CCEEEEEEeeccccc
Confidence            37899999 899999999999999 899999988765443

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=95.49  E-value=0.0086  Score=41.89  Aligned_cols=39  Identities=15%  Similarity=0.235  Sum_probs=34.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      +.++++.|.| .|-||+.+++.|..- |.+|...++.....
T Consensus        47 L~gktvgIiG-~G~IG~~va~~l~~f-g~~v~~~d~~~~~~   85 (193)
T d1mx3a1          47 IRGETLGIIG-LGRVGQAVALRAKAF-GFNVLFYDPYLSDG   85 (193)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEECTTSCTT
T ss_pred             eeCceEEEec-cccccccceeeeecc-ccceeeccCccccc
Confidence            4789999999 999999999999988 89999988865543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.0061  Score=42.58  Aligned_cols=37  Identities=19%  Similarity=0.288  Sum_probs=32.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      +-++|.|.| +|.+|+.++..++.. |++|.+.+++++.
T Consensus         3 ~IkkvaViG-aG~mG~~iA~~~a~~-G~~V~l~D~~~~~   39 (192)
T d1f0ya2           3 IVKHVTVIG-GGLMGAGIAQVAAAT-GHTVVLVDQTEDI   39 (192)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHH
T ss_pred             eeEEEEEEC-cCHHHHHHHHHHHhC-CCcEEEEECChHH
Confidence            347999999 599999999999998 8999999987653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.041  Score=37.12  Aligned_cols=37  Identities=27%  Similarity=0.244  Sum_probs=29.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      .+.+|+|.|+ |.+|...++.+...+..+|+++++++.
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~   62 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSAT   62 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHH
Confidence            5789999985 999999999998883348999887543

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.39  E-value=0.027  Score=38.15  Aligned_cols=72  Identities=14%  Similarity=0.011  Sum_probs=44.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-------ccCCcCEEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-------LLIEVDQIY  102 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-------~~~~~d~vi  102 (190)
                      ..+.+|+|.| .|.+|...++.+...+...|+++++++++    +...........+..+-.+.       ...++|+||
T Consensus        31 ~~g~~vli~G-aG~vG~~~~~~a~~~g~~~vv~~~~~~~k----~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vi  105 (172)
T d1h2ba2          31 YPGAYVAIVG-VGGLGHIAVQLLKVMTPATVIALDVKEEK----LKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAM  105 (172)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHHCCCEEEEEESSHHH----HHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEE
T ss_pred             CCCCEEEEeC-CChHHHHHHHHHHhhcCcccccccchhHH----HHHHhhcccceeecCcccHHHHHHHhhCCCCceEEE
Confidence            3578999998 59999999999988855677777774332    22222222223333221111       113599999


Q ss_pred             EccC
Q 029640          103 HLAC  106 (190)
Q Consensus       103 ~~ag  106 (190)
                      .++|
T Consensus       106 d~~g  109 (172)
T d1h2ba2         106 DFVG  109 (172)
T ss_dssp             ESSC
T ss_pred             EecC
Confidence            9997

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.38  E-value=0.015  Score=39.26  Aligned_cols=71  Identities=13%  Similarity=0.203  Sum_probs=38.7

Q ss_pred             CCCEEEEEcccchHHHHHH-HHHHhcCCCeEEEE-cCCCCCChhhhhhhhcCCceEEEec--c--ccccccCCcCEEEEc
Q 029640           31 SNMRILVTGGAGFIGSHLV-DKLMENEKNEVIVV-DNYFTGSKDNLRKWIGHPRFELIRH--D--VTEPLLIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~-~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~--D--~~~~~~~~~d~vi~~  104 (190)
                      +..|+.|.| +|.+|+.+. +.|......++.++ +|+.+.......+.   .++.....  |  +.+.++.++|+||.+
T Consensus         3 kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~---~~i~~~~~~~d~l~~~~~~~~iDiVf~A   78 (157)
T d1nvmb1           3 QKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQR---MGVTTTYAGVEGLIKLPEFADIDFVFDA   78 (157)
T ss_dssp             SCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHH---TTCCEESSHHHHHHHSGGGGGEEEEEEC
T ss_pred             CCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhh---cCCcccccceeeeeecccccccCEEEEc
Confidence            346899999 999999754 55544434566665 45433222222211   12333222  1  122345679999887


Q ss_pred             c
Q 029640          105 A  105 (190)
Q Consensus       105 a  105 (190)
                      .
T Consensus        79 T   79 (157)
T d1nvmb1          79 T   79 (157)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.29  E-value=0.01  Score=39.52  Aligned_cols=35  Identities=29%  Similarity=0.383  Sum_probs=31.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      +++++++|+| +|.+|..-++.|++. |.+|+++...
T Consensus        11 l~gkrvLViG-gG~va~~ka~~Ll~~-GA~VtVvap~   45 (150)
T d1kyqa1          11 LKDKRILLIG-GGEVGLTRLYKLMPT-GCKLTLVSPD   45 (150)
T ss_dssp             CTTCEEEEEE-ESHHHHHHHHHHGGG-TCEEEEEEEE
T ss_pred             eCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCC
Confidence            5889999999 599999999999999 8899998643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.25  E-value=0.012  Score=37.82  Aligned_cols=32  Identities=22%  Similarity=0.204  Sum_probs=29.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      ++++|.| +|+||..++..|.+. |.+|+++.|+
T Consensus        21 ~~vvIIG-gG~iG~E~A~~l~~l-G~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVG-ASYVALECAGFLAGI-GLDVTVMVRS   52 (122)
T ss_dssp             CSEEEEC-CSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             CeEEEEC-CCccHHHHHHHHhhc-CCeEEEEEec
Confidence            6799999 899999999999999 8899999875

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.24  E-value=0.057  Score=36.64  Aligned_cols=73  Identities=14%  Similarity=-0.032  Sum_probs=46.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc---------ccCCcCE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP---------LLIEVDQ  100 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~---------~~~~~d~  100 (190)
                      .++.+|+|.| .|.+|...++.+...+..+|+++++++++.+. .+++   .-.+.+...-.|.         .-.+.|+
T Consensus        26 ~~G~~VlV~G-aGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~-a~~l---Ga~~~i~~~~~d~~~~~~~~~~~~~G~d~  100 (174)
T d1p0fa2          26 TPGSTCAVFG-LGGVGFSAIVGCKAAGASRIIGVGTHKDKFPK-AIEL---GATECLNPKDYDKPIYEVICEKTNGGVDY  100 (174)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHH-HHHT---TCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CCCCEEEEEC-CCchhHHHHHHHHHcCCceeeccCChHHHHHH-HHHc---CCcEEEcCCCchhHHHHHHHHhcCCCCcE
Confidence            4678999998 59999999999999944689998875443321 2222   1223332211111         1136999


Q ss_pred             EEEccCC
Q 029640          101 IYHLACP  107 (190)
Q Consensus       101 vi~~ag~  107 (190)
                      +|-+.|.
T Consensus       101 vid~~g~  107 (174)
T d1p0fa2         101 AVECAGR  107 (174)
T ss_dssp             EEECSCC
T ss_pred             EEEcCCC
Confidence            9999863

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=95.20  E-value=0.0063  Score=41.55  Aligned_cols=73  Identities=18%  Similarity=0.259  Sum_probs=49.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecc--ccccccCCcCEEEEccCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD--VTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D--~~~~~~~~~d~vi~~ag~~  108 (190)
                      ..+|+|.| .|-.|..-++..... |.+|.+++.+.+.... +..... ..+.....+  ...+...+.|+||.++-+.
T Consensus        32 pa~V~ViG-aGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~-l~~~~~-~~~~~~~~~~~~l~~~~~~aDivI~aalip  106 (168)
T d1pjca1          32 PGKVVILG-GGVVGTEAAKMAVGL-GAQVQIFDINVERLSY-LETLFG-SRVELLYSNSAEIETAVAEADLLIGAVLVP  106 (168)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHHHHHH-HHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred             CcEEEEEC-CChHHHHHHHHHhhC-CCEEEEEeCcHHHHHH-HHHhhc-ccceeehhhhhhHHHhhccCcEEEEeeecC
Confidence            47899999 899999999999999 8999999886544332 222221 123333221  2223455799999998643

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.17  E-value=0.0089  Score=40.93  Aligned_cols=38  Identities=16%  Similarity=0.261  Sum_probs=32.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD   72 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~   72 (190)
                      .+|.+.| .|.+|..+++.|++. |++|.+.+|+++....
T Consensus         3 ~nIg~IG-lG~MG~~mA~~L~~~-G~~V~v~dr~~~~~~~   40 (176)
T d2pgda2           3 ADIALIG-LAVMGQNLILNMNDH-GFVVCAFNRTVSKVDD   40 (176)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSTHHHHH
T ss_pred             CcEEEEe-EhHHHHHHHHHHHHC-CCeEEEEcCCHHHHHH
Confidence            5799999 899999999999999 8999999997654443

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.13  E-value=0.0059  Score=41.84  Aligned_cols=37  Identities=27%  Similarity=0.448  Sum_probs=32.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK   71 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~   71 (190)
                      |+|.|+| .|.+|..+++.|++. +++|++.+|+++...
T Consensus         2 MkIGvIG-lG~MG~~ma~~L~~~-G~~V~~~dr~~~~~~   38 (178)
T d1pgja2           2 MDVGVVG-LGVMGANLALNIAEK-GFKVAVFNRTYSKSE   38 (178)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSHHHHH
T ss_pred             CEEEEEe-ehHHHHHHHHHHHHC-CCeEEEEECCHHHHH
Confidence            6799999 999999999999999 899999998655443

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.06  E-value=0.017  Score=43.32  Aligned_cols=37  Identities=30%  Similarity=0.468  Sum_probs=32.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      ++|+|+|.| +|.-|...|..|.+. |++|.++.+++..
T Consensus         1 k~KKI~IIG-aG~sGL~aA~~L~k~-G~~V~viEk~~~i   37 (314)
T d2bi7a1           1 KSKKILIVG-AGFSGAVIGRQLAEK-GHQVHIIDQRDHI   37 (314)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEEESSSSS
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHhC-CCCEEEEECCCCC
Confidence            368999999 899999999999998 8999999876543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.06  E-value=0.036  Score=37.74  Aligned_cols=73  Identities=11%  Similarity=0.036  Sum_probs=44.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc--------ccCCcCEE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP--------LLIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~--------~~~~~d~v  101 (190)
                      .++.+|+|.| .|.+|...++.+...+..+|+++++++++.. ..+++.   -.+.+...-.+.        ...++|+|
T Consensus        26 ~~g~~VlI~G-aG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~-~a~~lG---a~~~i~~~~~~~~~~v~~~t~g~G~D~v  100 (174)
T d1jqba2          26 EMGSSVVVIG-IGAVGLMGIAGAKLRGAGRIIGVGSRPICVE-AAKFYG---ATDILNYKNGHIEDQVMKLTNGKGVDRV  100 (174)
T ss_dssp             CTTCCEEEEC-CSHHHHHHHHHHHTTTCSCEEEECCCHHHHH-HHHHHT---CSEEECGGGSCHHHHHHHHTTTSCEEEE
T ss_pred             CCCCEEEEEc-CCcchhhhhhhhhcccccccccccchhhhHH-HHHhhC---ccccccccchhHHHHHHHHhhccCcceE
Confidence            3678999998 5999999999999883357888887543322 122221   123332211111        11359999


Q ss_pred             EEccCC
Q 029640          102 YHLACP  107 (190)
Q Consensus       102 i~~ag~  107 (190)
                      |.++|.
T Consensus       101 id~~g~  106 (174)
T d1jqba2         101 IMAGGG  106 (174)
T ss_dssp             EECSSC
T ss_pred             EEccCC
Confidence            999974

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.03  E-value=0.015  Score=41.69  Aligned_cols=70  Identities=16%  Similarity=0.137  Sum_probs=46.0

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      .+.+++|+|-| -|-+|+++++.|.+. |.++++.+.+    ...+...........  .+..+.....||+++=||.
T Consensus        36 ~l~g~~v~IqG-~GnVG~~~a~~L~~~-Gakvv~~d~~----~~~~~~~~~~~g~~~--~~~~~~~~~~cDIl~PcA~  105 (230)
T d1leha1          36 SLEGLAVSVQG-LGNVAKALCKKLNTE-GAKLVVTDVN----KAAVSAAVAEEGADA--VAPNAIYGVTCDIFAPCAL  105 (230)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSC----HHHHHHHHHHHCCEE--CCGGGTTTCCCSEEEECSC
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEeeccc----HHHHHHHHHhcCCcc--cCCcccccccccEeccccc
Confidence            35889999999 999999999999999 8898887653    222222211112222  2333333456888888875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.95  E-value=0.018  Score=41.44  Aligned_cols=34  Identities=29%  Similarity=0.230  Sum_probs=30.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      +|||+|+| +|.-|...+..|.+. |++|.++.+++
T Consensus         1 ~KkV~IIG-aG~aGL~aA~~La~~-G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIG-AGVSGLAAAYKLKIH-GLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTT-SCEEEEECSSS
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHhC-CCCEEEEeCCC
Confidence            58999999 899999999999998 89999998754

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=94.90  E-value=0.06  Score=37.50  Aligned_cols=38  Identities=24%  Similarity=0.279  Sum_probs=33.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      +.++++.|.| .|-||+.+++.|..- |.+|++.++....
T Consensus        43 l~~ktvgIiG-~G~IG~~va~~l~~f-g~~v~~~d~~~~~   80 (199)
T d1dxya1          43 LGQQTVGVMG-TGHIGQVAIKLFKGF-GAKVIAYDPYPMK   80 (199)
T ss_dssp             GGGSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCCS
T ss_pred             ccceeeeeee-ccccccccccccccc-ceeeeccCCccch
Confidence            4679999999 999999999999988 8999999886543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.89  E-value=0.024  Score=37.88  Aligned_cols=36  Identities=17%  Similarity=0.276  Sum_probs=29.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYF   67 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~   67 (190)
                      .+|||+|.| +|++|..++..|.+.+. .+|+++.+.+
T Consensus         1 ~gkrivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVG-GGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEEC-ccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            368999999 89999999999999832 4788887654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.79  E-value=0.094  Score=35.56  Aligned_cols=73  Identities=12%  Similarity=0.006  Sum_probs=46.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc---------ccCCcCE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP---------LLIEVDQ  100 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~---------~~~~~d~  100 (190)
                      ..+.+|+|+| .|.||...++.+...+...|++.++++++. +..+++.   -...+.....+.         ...++|+
T Consensus        27 ~~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~-~~a~~~G---a~~~i~~~~~~~~~~~~~~~~~~~G~d~  101 (174)
T d1e3ia2          27 TPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEKF-PKAKALG---ATDCLNPRELDKPVQDVITELTAGGVDY  101 (174)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHTT---CSEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred             CCCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccchHHH-HHHHHhC---CCcccCCccchhhhhhhHhhhhcCCCcE
Confidence            3678999998 699999999999999435788887754432 2222221   122222211111         1246999


Q ss_pred             EEEccCC
Q 029640          101 IYHLACP  107 (190)
Q Consensus       101 vi~~ag~  107 (190)
                      +|.+.|.
T Consensus       102 vie~~G~  108 (174)
T d1e3ia2         102 SLDCAGT  108 (174)
T ss_dssp             EEESSCC
T ss_pred             EEEeccc
Confidence            9999973

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.79  E-value=0.039  Score=37.87  Aligned_cols=33  Identities=21%  Similarity=0.441  Sum_probs=27.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      |-||.|-| .|.||+.+++.+.+++..++..+..
T Consensus         1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd   33 (178)
T d1b7go1           1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAK   33 (178)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEC
T ss_pred             CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEEC
Confidence            35799999 9999999999999986667777654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.77  E-value=0.067  Score=35.97  Aligned_cols=72  Identities=17%  Similarity=0.059  Sum_probs=44.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccc-ccc--------ccCCcCE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV-TEP--------LLIEVDQ  100 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~-~~~--------~~~~~d~  100 (190)
                      ..+.+|+|.|+ |.+|...++.+...+...|+++++++++. +..+++. .  .+.+..+- .+.        ...++|+
T Consensus        27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~-~~ak~lG-a--~~~i~~~~~~~~~~~~~~~~~~~g~D~  101 (176)
T d2fzwa2          27 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKF-ARAKEFG-A--TECINPQDFSKPIQEVLIEMTDGGVDY  101 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHHT-C--SEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHH-HHHHHhC-C--cEEEeCCchhhHHHHHHHHHcCCCCcE
Confidence            36789999996 67999999999999446777776644432 2233332 1  12222211 111        1236999


Q ss_pred             EEEccC
Q 029640          101 IYHLAC  106 (190)
Q Consensus       101 vi~~ag  106 (190)
                      ||.+.|
T Consensus       102 vid~~G  107 (176)
T d2fzwa2         102 SFECIG  107 (176)
T ss_dssp             EEECSC
T ss_pred             eeecCC
Confidence            999987

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.025  Score=39.17  Aligned_cols=38  Identities=18%  Similarity=0.026  Sum_probs=32.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      +.++++.|.| .|.||+.+++.+..- +.+|...++....
T Consensus        42 l~~~~vgiiG-~G~IG~~va~~l~~f-g~~v~~~d~~~~~   79 (188)
T d1sc6a1          42 ARGKKLGIIG-YGHIGTQLGILAESL-GMYVYFYDIENKL   79 (188)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCCC
T ss_pred             ccceEEEEee-cccchhhhhhhcccc-cceEeeccccccc
Confidence            4789999998 999999999998887 8999999876543

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.66  E-value=0.0099  Score=40.26  Aligned_cols=39  Identities=15%  Similarity=0.204  Sum_probs=34.2

Q ss_pred             ccccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        27 ~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ..++.+|+++|.| -|++|+-+++.|... |..|+++..++
T Consensus        18 ~~~laGk~vvV~G-YG~vGrG~A~~~rg~-Ga~V~V~E~DP   56 (163)
T d1v8ba1          18 DFLISGKIVVICG-YGDVGKGCASSMKGL-GARVYITEIDP   56 (163)
T ss_dssp             CCCCTTSEEEEEC-CSHHHHHHHHHHHHH-TCEEEEECSCH
T ss_pred             CceecCCEEEEec-ccccchhHHHHHHhC-CCEEEEEecCc
Confidence            4457899999999 999999999999999 89999986643

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.62  E-value=0.0085  Score=41.56  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=31.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      ++|.|.| +|.+|+.++..++.. |++|.+.+++++.
T Consensus         5 ~~vaViG-aG~mG~~iA~~~a~~-G~~V~l~D~~~~~   39 (186)
T d1wdka3           5 KQAAVLG-AGIMGGGIAYQSASK-GTPILMKDINEHG   39 (186)
T ss_dssp             SSEEEEC-CHHHHHHHHHHHHHT-TCCEEEECSSHHH
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhC-CCeEEEEECCHHH
Confidence            6799999 599999999999999 8999999986543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.58  E-value=0.028  Score=39.73  Aligned_cols=34  Identities=24%  Similarity=0.326  Sum_probs=30.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      .++|+|.| +|..|...+..|.++ |++|.++.|..
T Consensus         6 ~~kVvVIG-aGiaGl~~A~~L~~~-G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLG-SGVIGLSSALILARK-GYSVHILARDL   39 (268)
T ss_dssp             SCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             CCcEEEEC-ccHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            36899999 899999999999999 89999998864

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.52  E-value=0.022  Score=38.89  Aligned_cols=36  Identities=14%  Similarity=0.101  Sum_probs=31.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTG   69 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~   69 (190)
                      ++||+|.| +|..|...+..|.++ |+ +|.++.|.+..
T Consensus         4 ~~kVaIIG-aGpaGl~aA~~l~~~-G~~~V~v~E~~~~~   40 (196)
T d1gtea4           4 SAKIALLG-AGPASISCASFLARL-GYSDITIFEKQEYV   40 (196)
T ss_dssp             GCCEEEEC-CSHHHHHHHHHHHHT-TCCCEEEEESSSSC
T ss_pred             CCEEEEEC-ChHHHHHHHHHHHHC-CCCeEEEEEecCcc
Confidence            48999999 899999999999999 65 69999887554

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.51  E-value=0.044  Score=37.33  Aligned_cols=33  Identities=21%  Similarity=0.411  Sum_probs=26.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      .+||.|-| .|-||+.+++.+.++...++..+..
T Consensus         2 ~irIaING-fGRIGR~v~Ral~~~~dieiVaINd   34 (172)
T d2czca2           2 KVKVGVNG-YGTIGKRVAYAVTKQDDMELIGITK   34 (172)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEE
T ss_pred             cEEEEEEC-CCHHHHHHHHHHHhCCCceEEEEec
Confidence            36899999 8999999999999885556666543

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=94.51  E-value=0.043  Score=37.31  Aligned_cols=76  Identities=18%  Similarity=0.220  Sum_probs=44.5

Q ss_pred             CCEEEEEcccchHHHH--HHHHHHhcC---CCeEEEEcCCCCCChhhh---hhhh--cCCceEEEeccccccccCCcCEE
Q 029640           32 NMRILVTGGAGFIGSH--LVDKLMENE---KNEVIVVDNYFTGSKDNL---RKWI--GHPRFELIRHDVTEPLLIEVDQI  101 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~--l~~~L~~~~---~~~v~~~~r~~~~~~~~~---~~~~--~~~~~~~~~~D~~~~~~~~~d~v  101 (190)
                      .|||.|.| +|.+|..  ++..|+...   +.++.+++.+.+......   .+..  ..........+=.++.+.+.|+|
T Consensus         2 ~mKI~iIG-aGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V   80 (171)
T d1obba1           2 SVKIGIIG-AGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV   80 (171)
T ss_dssp             CCEEEEET-TTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             CcEEEEEC-CCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeE
Confidence            47899999 4888864  344455431   358999988644332111   1111  12334444433334566889999


Q ss_pred             EEccCCC
Q 029640          102 YHLACPA  108 (190)
Q Consensus       102 i~~ag~~  108 (190)
                      |+.++..
T Consensus        81 v~~~~~g   87 (171)
T d1obba1          81 INTAMVG   87 (171)
T ss_dssp             EECCCTT
T ss_pred             eeecccc
Confidence            9998754

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.076  Score=36.35  Aligned_cols=75  Identities=19%  Similarity=0.108  Sum_probs=51.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh-----------hh-------hhcCCceEEE-ecccc
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-----------RK-------WIGHPRFELI-RHDVT   91 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~-----------~~-------~~~~~~~~~~-~~D~~   91 (190)
                      +.++|+|.| +|..|...+..|.++ |++|.++.+.+...-...           ..       .....++++. ..+++
T Consensus        42 ~~k~V~IIG-aGPAGL~AA~~la~~-G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt  119 (179)
T d1ps9a3          42 QKKNLAVVG-AGPAGLAFAINAAAR-GHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT  119 (179)
T ss_dssp             SCCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCC
T ss_pred             CCcEEEEEC-ccHHHHHHHHHHHhh-ccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEc
Confidence            568999999 899999999999999 899999988754321110           00       0111234442 24555


Q ss_pred             ccccCCcCEEEEccCC
Q 029640           92 EPLLIEVDQIYHLACP  107 (190)
Q Consensus        92 ~~~~~~~d~vi~~ag~  107 (190)
                      .+...+.|.||...|.
T Consensus       120 ~~~~~~~d~vilAtG~  135 (179)
T d1ps9a3         120 ADQLQAFDETILASGI  135 (179)
T ss_dssp             SSSSCCSSEEEECCCE
T ss_pred             ccccccceeEEEeecC
Confidence            5556679999988874

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=94.43  E-value=0.029  Score=38.79  Aligned_cols=37  Identities=19%  Similarity=0.156  Sum_probs=32.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      +.++++.|.| .|.||+.+++.|..- +.+|...++...
T Consensus        42 l~~~~vgiiG-~G~IG~~va~~l~~f-g~~v~~~d~~~~   78 (188)
T d2naca1          42 LEAMHVGTVA-AGRIGLAVLRRLAPF-DVHLHYTDRHRL   78 (188)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHGGG-TCEEEEECSSCC
T ss_pred             ccccceeecc-ccccchhhhhhhhcc-CceEEEEeeccc
Confidence            4789999999 999999999999988 889999987543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.25  E-value=0.025  Score=40.59  Aligned_cols=33  Identities=18%  Similarity=0.410  Sum_probs=29.7

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      |+|+|.| +|..|...+..|.++ |++|.++.+++
T Consensus         1 m~V~IIG-aG~aGL~aA~~L~~~-G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVG-GGISGLAVAHHLRSR-GTDAVLLESSA   33 (347)
T ss_dssp             CCEEEEC-CBHHHHHHHHHHHTT-TCCEEEECSSS
T ss_pred             CeEEEEC-CCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence            6799999 799999999999999 89999997754

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.22  E-value=0.041  Score=39.14  Aligned_cols=36  Identities=22%  Similarity=0.165  Sum_probs=32.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      +.+||+|.| +|..|..++..|.++ |.+|.++.|.+.
T Consensus         3 ~~~kV~IiG-aG~aGl~~A~~L~~~-G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVG-GSISGLTAALMLRDA-GVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             CCCcEEEEC-cCHHHHHHHHHHHHC-CCCEEEEeCCCC
Confidence            458899999 899999999999999 899999988654

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=94.18  E-value=0.034  Score=38.58  Aligned_cols=37  Identities=19%  Similarity=0.179  Sum_probs=32.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      +.++++.|.| .|.||+.+++.+..- +.+|...++...
T Consensus        45 l~g~tvgIiG-~G~IG~~va~~l~~f-g~~v~~~d~~~~   81 (191)
T d1gdha1          45 LDNKTLGIYG-FGSIGQALAKRAQGF-DMDIDYFDTHRA   81 (191)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEECSSCC
T ss_pred             ecccceEEee-cccchHHHHHHHHhh-cccccccccccc
Confidence            4789999999 999999999999888 899998877544

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.15  E-value=0.065  Score=37.89  Aligned_cols=37  Identities=30%  Similarity=0.296  Sum_probs=32.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      ..++|+|.| +|..|...+..|.++ |++|.++.+.+..
T Consensus        48 ~~k~VvIIG-aGpAGl~aA~~l~~~-G~~v~l~E~~~~~   84 (233)
T d1djqa3          48 NKDSVLIVG-AGPSGSEAARVLMES-GYTVHLTDTAEKI   84 (233)
T ss_dssp             SCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSSST
T ss_pred             CCceEEEEc-ccHHHHHHHHHHHHh-ccceeeEeecccc
Confidence            568999999 899999999999999 8999999876544

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=94.07  E-value=0.15  Score=31.83  Aligned_cols=38  Identities=16%  Similarity=0.127  Sum_probs=30.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhc--CCCeEEEEcCCCCCCh
Q 029640           33 MRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSK   71 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~--~~~~v~~~~r~~~~~~   71 (190)
                      ++++|.| +|++|-.++..|...  .+.+|.++.|.+...+
T Consensus        19 ~~v~IiG-gG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~   58 (117)
T d1feca2          19 KRALCVG-GGYISIEFAGIFNAYKARGGQVDLAYRGDMILR   58 (117)
T ss_dssp             SEEEEEC-SSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST
T ss_pred             CeEEEEC-CChHHHHHHHHhHhhcccccccceecccccccc
Confidence            7899999 899999999877653  2679999988765443

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.97  E-value=0.035  Score=37.88  Aligned_cols=36  Identities=19%  Similarity=0.213  Sum_probs=31.8

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      .+.||+++|.|.+.-+|+-++..|+++ +..|..+..
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~-gaTVt~~~~   61 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLAND-GATVYSVDV   61 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTT-SCEEEEECS
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHC-CCEEEEecc
Confidence            358999999999999999999999998 788877654

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=93.92  E-value=0.091  Score=35.66  Aligned_cols=33  Identities=21%  Similarity=0.427  Sum_probs=26.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      |++|.|-| -|-||+.+++.|..++.-++..+..
T Consensus         1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaInd   33 (171)
T d1cf2o1           1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVSK   33 (171)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEE
T ss_pred             CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEec
Confidence            57899998 9999999999998885556665543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.91  E-value=0.14  Score=34.67  Aligned_cols=73  Identities=16%  Similarity=0.101  Sum_probs=47.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEe-cccccc--------ccCCcCE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR-HDVTEP--------LLIEVDQ  100 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~D~~~~--------~~~~~d~  100 (190)
                      ..+.+|+|+| .|.+|...++.+...+..+|+++++++++.+- ..++.   -...+. -|-.+.        ...++|+
T Consensus        28 ~~g~tVlI~G-~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~-Ak~~G---A~~~in~~~~~~~~~~~~~~~~g~G~d~  102 (176)
T d1d1ta2          28 KPGSTCVVFG-LGGVGLSVIMGCKSAGASRIIGIDLNKDKFEK-AMAVG---ATECISPKDSTKPISEVLSEMTGNNVGY  102 (176)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHH-HHHHT---CSEEECGGGCSSCHHHHHHHHHTSCCCE
T ss_pred             CCCCEEEEEC-CCchhHHHHHHHHHcCCceEEEecCcHHHHHH-HHhcC---CcEEECccccchHHHHHHHHhccccceE
Confidence            3678999998 59999999999999844789999886554432 22221   112222 121111        1236999


Q ss_pred             EEEccCC
Q 029640          101 IYHLACP  107 (190)
Q Consensus       101 vi~~ag~  107 (190)
                      +|.+.|.
T Consensus       103 vi~~~g~  109 (176)
T d1d1ta2         103 TFEVIGH  109 (176)
T ss_dssp             EEECSCC
T ss_pred             EEEeCCc
Confidence            9999873

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.86  E-value=0.2  Score=33.47  Aligned_cols=73  Identities=14%  Similarity=0.035  Sum_probs=45.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc---------cCCcCE
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---------LIEVDQ  100 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---------~~~~d~  100 (190)
                      ..+.+|+|.|+ |.+|...+..+...++.+|+++++++++.+. ..++   .-.+.+...-.+..         ..++|+
T Consensus        27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~-a~~~---GAd~~in~~~~~~~~~~~~~~~~~~G~d~  101 (175)
T d1cdoa2          27 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEK-AKVF---GATDFVNPNDHSEPISQVLSKMTNGGVDF  101 (175)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHH-HHHT---TCCEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred             CCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHH-HHHc---CCcEEEcCCCcchhHHHHHHhhccCCcce
Confidence            36789999994 6688888888888856789998886544322 2222   12233322111110         136999


Q ss_pred             EEEccCC
Q 029640          101 IYHLACP  107 (190)
Q Consensus       101 vi~~ag~  107 (190)
                      +|.+.|.
T Consensus       102 vid~~G~  108 (175)
T d1cdoa2         102 SLECVGN  108 (175)
T ss_dssp             EEECSCC
T ss_pred             eeeecCC
Confidence            9999973

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=93.81  E-value=0.038  Score=36.86  Aligned_cols=34  Identities=21%  Similarity=0.330  Sum_probs=27.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDN   65 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r   65 (190)
                      |+++.|.|+||.||....+-+.+.. ..+|.++.-
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa   35 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVA   35 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEe
Confidence            5789999999999999999998874 356666643

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.78  E-value=0.052  Score=35.92  Aligned_cols=38  Identities=21%  Similarity=0.359  Sum_probs=30.8

Q ss_pred             CCCEEEEE-cccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029640           31 SNMRILVT-GGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        31 ~~~~vlIt-G~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      .+++++|. .++||||..++..|.+. |++|+++.+.+..
T Consensus        38 ~~~~vvi~d~ggg~ig~e~A~~la~~-G~~Vtlv~~~~~~   76 (156)
T d1djqa2          38 IGKRVVILNADTYFMAPSLAEKLATA-GHEVTIVSGVHLA   76 (156)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHT-TCEEEEEESSCTT
T ss_pred             cCCceEEEecCCChHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence            35677776 24799999999999999 8999999886543

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.53  E-value=0.36  Score=30.86  Aligned_cols=37  Identities=27%  Similarity=0.335  Sum_probs=29.6

Q ss_pred             ccCCCEEEEEccc---chHHHHHHHHHHhcCCCeEEEEcC
Q 029640           29 FQSNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        29 ~~~~~~vlItG~~---G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      ++.-++|.|.|++   +..|..+.+.|.+.+..+|+.+..
T Consensus         5 lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP   44 (129)
T d2csua1           5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNI   44 (129)
T ss_dssp             TTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECS
T ss_pred             hCCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEecc
Confidence            3466899999998   999999999987763368888754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.50  E-value=0.06  Score=40.17  Aligned_cols=37  Identities=19%  Similarity=0.255  Sum_probs=31.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFT   68 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~   68 (190)
                      .+|+|+|+| +|.-|...+..|++.+ +++|+++.|+..
T Consensus         3 ~~KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           3 TIRKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             SCCEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCeEEEEC-cCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            568999999 8999999999998873 369999988754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.45  E-value=0.045  Score=39.36  Aligned_cols=31  Identities=23%  Similarity=0.377  Sum_probs=28.8

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      |+|+| +|.+|..++..|.++ |.+|.++.+..
T Consensus         7 vvIIG-aGi~Gls~A~~La~~-G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIG-GGIIGSAIAYYLAKE-NKNTALFESGT   37 (276)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             EEEEC-cCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            99999 899999999999999 89999998864

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.44  E-value=0.062  Score=39.15  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=31.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      +-++|+|+| +|..|...+..|.++ |++|.++.+.+
T Consensus        29 ~pkkV~IIG-aG~aGLsaA~~L~~~-G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVG-AGMAGLSAAYVLAGA-GHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEEC-CBHHHHHHHHHHHHH-TCEEEEECSSS
T ss_pred             CCCeEEEEC-CCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            347999999 899999999999999 89999998754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.40  E-value=0.063  Score=31.53  Aligned_cols=33  Identities=21%  Similarity=0.063  Sum_probs=29.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      +|+|.|.| +|.+|+-++.+-.+. |.++.+++..
T Consensus         1 ~k~vgIlG-~GQLgrMl~~Aa~~L-G~~v~vldp~   33 (78)
T d3etja2           1 MKQVCVLG-NGQLGRMLRQAGEPL-GIAVWPVGLD   33 (78)
T ss_dssp             CEEEEEEB-CSHHHHHHHHHHGGG-TEEEEEECTT
T ss_pred             CCEEEEEc-CCHHHHHHHHHHHHc-CCEEEEEcCC
Confidence            47899999 899999999999999 8999988754

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.18  E-value=0.064  Score=35.81  Aligned_cols=37  Identities=16%  Similarity=0.093  Sum_probs=30.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ..+.+|+|.|+ |.+|...++.+... |.+|+++++++.
T Consensus        26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~-G~~Vi~~~~~~~   62 (166)
T d1llua2          26 RPGQWVAISGI-GGLGHVAVQYARAM-GLHVAAIDIDDA   62 (166)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESCHH
T ss_pred             CCCCEEEEeec-cccHHHHHHHHHHc-CCccceecchhh
Confidence            46789999985 99999999988887 789999987543

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.17  E-value=0.05  Score=36.60  Aligned_cols=31  Identities=19%  Similarity=0.266  Sum_probs=25.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEE
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV   63 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~   63 (190)
                      .+++|+|.| +|++|-.++..|.+. +.++.++
T Consensus         2 ~~~~VvIIG-gG~~G~e~A~~l~~~-g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVG-TGLAGVEVAFGLRAS-GWEGNIR   32 (185)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHHHT-TCCSEEE
T ss_pred             CCCCEEEEC-CcHHHHHHHHHHHHc-CCceEEE
Confidence            457899999 899999999999998 6554444

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=93.11  E-value=0.067  Score=34.23  Aligned_cols=64  Identities=13%  Similarity=0.036  Sum_probs=44.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------CCcCEEEEcc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------~~~d~vi~~a  105 (190)
                      |+++|.| .|-+|+.+++.|..   +++.++..++..    ...+. ..++.++.+|.++++.      .+.+.+|-+.
T Consensus         1 kHivI~G-~g~~g~~l~~~L~~---~~i~vi~~d~~~----~~~~~-~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~   70 (129)
T d2fy8a1           1 RHVVICG-WSESTLECLRELRG---SEVFVLAEDENV----RKKVL-RSGANFVHGDPTRVSDLEKANVRGARAVIVNL   70 (129)
T ss_dssp             CCEEEES-CCHHHHHHHHTSCG---GGEEEEESCTTH----HHHHH-HTTCEEEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred             CEEEEEC-CCHHHHHHHHHHcC---CCCEEEEcchHH----HHHHH-hcCccccccccCCHHHHHHhhhhcCcEEEEec
Confidence            5688998 78999999999843   456666654332    22221 2368899999998753      4588887665

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=93.06  E-value=0.24  Score=32.95  Aligned_cols=104  Identities=16%  Similarity=0.131  Sum_probs=51.7

Q ss_pred             CEEEEEcccchHHHH-HHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCCc
Q 029640           33 MRILVTGGAGFIGSH-LVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI  111 (190)
Q Consensus        33 ~~vlItG~~G~iG~~-l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~~  111 (190)
                      +|+.|.| .|.+|+. ....|.+.++.++.+++++++.... +....   ++.....|..+....++|+|+-+.. ....
T Consensus         2 irvgiiG-~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~-~~~~~---~~~~~~~~~~~ll~~~iD~V~I~tp-~~~H   75 (167)
T d1xeaa1           2 LKIAMIG-LGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGT-LATRY---RVSATCTDYRDVLQYGVDAVMIHAA-TDVH   75 (167)
T ss_dssp             EEEEEEC-CCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHH-HHHHT---TCCCCCSSTTGGGGGCCSEEEECSC-GGGH
T ss_pred             eEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHH-HHHhc---ccccccccHHHhcccccceeccccc-cccc
Confidence            6899999 7888866 5666666645576666553332222 22211   1111223333322246898875542 1110


Q ss_pred             cc------ccC----chhHHHHHHHHHHHHHHHHHHcCCeE
Q 029640          112 FY------KYN----PVKTIKTNVIGTLNMLGLAKRVGARI  142 (190)
Q Consensus       112 ~~------~~~----~~~~~~~n~~~~~~l~~~~~~~~~~~  142 (190)
                      ..      +..    -++-+..+..-...+.+++++++.++
T Consensus        76 ~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~  116 (167)
T d1xeaa1          76 STLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPL  116 (167)
T ss_dssp             HHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             ccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence            00      000    00113345556677788887777543

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.96  E-value=0.084  Score=36.16  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=28.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~   67 (190)
                      |||+|.| +|++|..++..|.+.+ +.+|+++.|..
T Consensus         1 ~KVvIIG-gG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLG-SSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEEC-SSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEEC-CcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            6899999 7899999999999873 35788887654

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=92.89  E-value=0.13  Score=36.81  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=30.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      +.+++|+|-| .|-+|+++++.|.+. |.+|++++.
T Consensus        29 l~g~~v~IqG-fGnVG~~~a~~L~~~-Gakvv~vsD   62 (242)
T d1v9la1          29 IEGKTVAIQG-MGNVGRWTAYWLEKM-GAKVIAVSD   62 (242)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEEEC
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHc-CCeEEEeec
Confidence            5889999998 999999999999999 788877653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.85  E-value=0.35  Score=33.17  Aligned_cols=37  Identities=24%  Similarity=0.133  Sum_probs=29.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ..+.+|+|.| +|.+|...++.+...+...|+++++++
T Consensus        24 ~~G~tVlV~G-aG~vGl~a~~~ak~~ga~~Vi~~d~~~   60 (195)
T d1kola2          24 GPGSTVYVAG-AGPVGLAAAASARLLGAAVVIVGDLNP   60 (195)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHHhhcccceeeecccc
Confidence            3678999998 599999888888877556888887743

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.72  E-value=0.069  Score=36.94  Aligned_cols=32  Identities=22%  Similarity=0.318  Sum_probs=29.1

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      |+|.| +|..|...+..|.++ |.+|.++.+++.
T Consensus         8 viViG-aG~~Gl~~A~~La~~-G~~V~vlE~~~~   39 (297)
T d2bcgg1           8 VIVLG-TGITECILSGLLSVD-GKKVLHIDKQDH   39 (297)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             EEEEC-cCHHHHHHHHHHHHC-CCCEEEEcCCCC
Confidence            79999 999999999999999 899999988653

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.60  E-value=0.068  Score=39.55  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=29.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~   64 (190)
                      +.+++|+|-| .|-+|+++++.|.+. |.+|+.++
T Consensus        34 L~gktvaIqG-fGnVG~~~A~~L~e~-Gakvv~vs   66 (293)
T d1hwxa1          34 FGDKTFAVQG-FGNVGLHSMRYLHRF-GAKCVAVG   66 (293)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEE
Confidence            4789999999 899999999999999 78887764

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.26  E-value=0.077  Score=39.08  Aligned_cols=35  Identities=17%  Similarity=0.402  Sum_probs=30.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      |..|+|.| +|..|..++..|.+. |.+|.++.+++.
T Consensus         1 M~dv~IIG-aG~sGl~~A~~L~~~-g~~V~iiEk~~~   35 (298)
T d1i8ta1           1 MYDYIIVG-SGLFGAVCANELKKL-NKKVLVIEKRNH   35 (298)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHGGG-TCCEEEECSSSS
T ss_pred             CccEEEEC-CcHHHHHHHHHHHhC-CCcEEEEECCCC
Confidence            34689999 899999999999998 899999987654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.99  E-value=0.13  Score=37.11  Aligned_cols=35  Identities=14%  Similarity=0.255  Sum_probs=30.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      +..+|+|.| +|.-|...+..|.+. |++|.++-+++
T Consensus         4 ~~~kViVIG-aG~aGL~aA~~L~~~-G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIG-SGVSGLAAARQLQSF-GMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEEC-CBHHHHHHHHHHHHT-TCEEEEECSSS
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHhC-CCCEEEEeCCC
Confidence            346799999 899999999999999 89999996643

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=91.97  E-value=0.077  Score=35.27  Aligned_cols=33  Identities=27%  Similarity=0.415  Sum_probs=27.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDN   65 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r   65 (190)
                      ++|.|.|+||-||....+-+.+.. ..+|.++.-
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa   36 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTA   36 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence            889999999999999999998863 356666643

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=91.82  E-value=0.73  Score=30.25  Aligned_cols=103  Identities=17%  Similarity=0.132  Sum_probs=51.7

Q ss_pred             CEEEEEcccchHHHH-HHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCCc
Q 029640           33 MRILVTGGAGFIGSH-LVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI  111 (190)
Q Consensus        33 ~~vlItG~~G~iG~~-l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~~  111 (190)
                      ++|.|.| +|.+|.. ....|...++.++..+..........+.+..   ++.+  .|-.+....++|+|+-+.- ....
T Consensus         2 iri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~---~~~~--~~~~~~l~~~~D~V~I~tp-~~~h   74 (164)
T d1tlta1           2 LRIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW---RIPY--ADSLSSLAASCDAVFVHSS-TASH   74 (164)
T ss_dssp             EEEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH---TCCB--CSSHHHHHTTCSEEEECSC-TTHH
T ss_pred             CEEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc---cccc--cccchhhhhhccccccccc-chhc
Confidence            5799999 7999976 4666666545666655433333333332222   2222  2222222356898876542 1110


Q ss_pred             c--c----ccC----chhHHHHHHHHHHHHHHHHHHcCCeE
Q 029640          112 F--Y----KYN----PVKTIKTNVIGTLNMLGLAKRVGARI  142 (190)
Q Consensus       112 ~--~----~~~----~~~~~~~n~~~~~~l~~~~~~~~~~~  142 (190)
                      .  .    +..    -+.-+..+..-...++++++++++++
T Consensus        75 ~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~  115 (164)
T d1tlta1          75 FDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTL  115 (164)
T ss_dssp             HHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             cccccccccccceeeccccccCCHHHHHHHHHHHHHcCCcE
Confidence            0  0    000    00113344555667788888877543

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.54  E-value=0.1  Score=37.74  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=29.1

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      +|+|.| +|-.|..++..|.++ |.+|.++.|++
T Consensus         4 ~V~IvG-aGp~Gl~~A~~L~~~-G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIG-AGPSGLLLGQLLHKA-GIDNVILERQT   35 (292)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHH-TCCEEEECSSC
T ss_pred             CEEEEC-cCHHHHHHHHHHHHC-CCCEEEEeCCC
Confidence            599999 789999999999999 89999998864

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.44  E-value=0.27  Score=33.58  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=32.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      --+|+|.| .|-.|..-++..... |..|.+++.+....
T Consensus        29 pa~VvViG-aGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~   65 (183)
T d1l7da1          29 PARVLVFG-VGVAGLQAIATAKRL-GAVVMATDVRAATK   65 (183)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCSTTH
T ss_pred             CcEEEEEc-CcHHHHHHHHHHHHc-CCEEEEEeccHHHH
Confidence            36899999 899999999999999 89999999876543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=91.32  E-value=0.12  Score=37.67  Aligned_cols=33  Identities=36%  Similarity=0.642  Sum_probs=28.3

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      +|+|.| +|.+|..++..|.+++..+|.++.|+.
T Consensus         3 dViIIG-aGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEEC-cCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            589999 899999999999999335799998864

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.24  E-value=1.1  Score=28.77  Aligned_cols=88  Identities=14%  Similarity=0.169  Sum_probs=54.7

Q ss_pred             cccCCCEEEEEccc---chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEc
Q 029640           28 FFQSNMRILVTGGA---GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        28 ~~~~~~~vlItG~~---G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~  104 (190)
                      .+.+.++|.|.|++   +-.|..+++.|.+. |++|+.+..+..    .+.      +... .-++.|. -..+|.++-+
T Consensus        15 ~L~~~ksIAVVGaS~~~~~~g~~v~~~L~~~-g~~v~pVnP~~~----~i~------G~~~-~~sl~dl-p~~iD~v~i~   81 (139)
T d2d59a1          15 ILTRYKKIALVGASPKPERDANIVMKYLLEH-GYDVYPVNPKYE----EVL------GRKC-YPSVLDI-PDKIEVVDLF   81 (139)
T ss_dssp             HHHHCCEEEEETCCSCTTSHHHHHHHHHHHT-TCEEEEECTTCS----EET------TEEC-BSSGGGC-SSCCSEEEEC
T ss_pred             HHhcCCeEEEEeecCCCCCchHHHHHHHHHC-CCEEEEECCccc----ccC------CCcc-ccccccc-CccceEEEEE
Confidence            34467999999988   78999999999998 788888754211    010      1111 1233322 1347887666


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEe
Q 029640          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS  146 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vS  146 (190)
                      ..          ++        .+..+++.|.+.+.+.+++.
T Consensus        82 vp----------~~--------~~~~~~~e~~~~g~k~v~~~  105 (139)
T d2d59a1          82 VK----------PK--------LTMEYVEQAIKKGAKVVWFQ  105 (139)
T ss_dssp             SC----------HH--------HHHHHHHHHHHHTCSEEEEC
T ss_pred             eC----------HH--------HHHHHHHHHHHhCCCEEEEe
Confidence            52          11        13457777777787766554

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.13  E-value=0.24  Score=31.86  Aligned_cols=38  Identities=29%  Similarity=0.285  Sum_probs=30.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhc---CCCeEEEEcCCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMEN---EKNEVIVVDNYFTG   69 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~---~~~~v~~~~r~~~~   69 (190)
                      ..++++|.| +|++|-.++..|...   -+.+|+++.+.+..
T Consensus        36 ~~k~i~IvG-gG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          36 EVKSITIIG-GGFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             HCSEEEEEC-CSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            468999999 799999999999642   26799998876543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.84  E-value=0.19  Score=35.56  Aligned_cols=35  Identities=23%  Similarity=0.285  Sum_probs=30.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTG   69 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~   69 (190)
                      ++|+|.| +|..|..++..|.+. | +.|.++.|.+..
T Consensus         2 ~~V~IvG-aG~aGl~~A~~L~~~-Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           2 IDILIAG-AGIGGLSCALALHQA-GIGKVTLLESSSEI   37 (288)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEEESSSSC
T ss_pred             CEEEEEC-cCHHHHHHHHHHHhC-CCCeEEEEeCCCCC
Confidence            5799999 899999999999998 6 689898886543

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=90.82  E-value=0.15  Score=35.34  Aligned_cols=32  Identities=25%  Similarity=0.518  Sum_probs=28.1

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYF   67 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~   67 (190)
                      +|+|.| +|..|...+..|.++ | ++|+++.+++
T Consensus         2 ~V~IIG-aG~aGL~aA~~L~~~-G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVG-AGMSGISAAKRLSEA-GITDLLILEATD   34 (347)
T ss_dssp             CEEEEC-CBHHHHHHHHHHHHT-TCCCEEEECSSS
T ss_pred             CEEEEC-CcHHHHHHHHHHHhC-CCCcEEEEECCC
Confidence            589999 899999999999999 6 5799997754

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.81  E-value=0.43  Score=32.08  Aligned_cols=110  Identities=15%  Similarity=0.084  Sum_probs=56.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhhcC-CceEEEecccccc-ccCCcCEEEEccCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIGH-PRFELIRHDVTEP-LLIEVDQIYHLACPAS  109 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~-~~~~~d~vi~~ag~~~  109 (190)
                      .|+.|.| +|.+|+..++.|...++.++..+ +++.+.. ..+...... ....++ -|..+. ...++|+|+-+.. ..
T Consensus         2 iki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~-~~~~~~~~~~~~~~~~-~~~~~ll~~~~iD~v~I~tp-~~   77 (184)
T d1ydwa1           2 IRIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKA-KAFATANNYPESTKIH-GSYESLLEDPEIDALYVPLP-TS   77 (184)
T ss_dssp             EEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHHTTCCTTCEEE-SSHHHHHHCTTCCEEEECCC-GG
T ss_pred             eEEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCcccc-ccchhccccccceeec-CcHHHhhhccccceeeeccc-ch
Confidence            5799999 78999999999988756677655 4432221 222221111 122222 233221 2346888875542 11


Q ss_pred             Cccc------ccC----chhHHHHHHHHHHHHHHHHHHcCCeEEEEec
Q 029640          110 PIFY------KYN----PVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus       110 ~~~~------~~~----~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS  147 (190)
                      ....      +..    -+.-+..+..-...+++.+++.++.+ .++-
T Consensus        78 ~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~-~v~~  124 (184)
T d1ydwa1          78 LHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI-MDGT  124 (184)
T ss_dssp             GHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE-EECC
T ss_pred             hhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEE-EEEE
Confidence            1000      000    00112345566677888888877544 4444

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=90.51  E-value=0.17  Score=36.24  Aligned_cols=31  Identities=26%  Similarity=0.424  Sum_probs=28.3

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      |+|.| +|.+|..++..|.++ |.+|.++.+..
T Consensus         6 vvIIG-aGi~Gls~A~~La~~-G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVG-AGSMGMAAGYQLAKQ-GVKTLLVDAFD   36 (281)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSC
T ss_pred             EEEEC-cCHHHHHHHHHHHHC-CCcEEEEeCCC
Confidence            88999 899999999999999 89999998764

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=90.22  E-value=0.21  Score=37.66  Aligned_cols=72  Identities=11%  Similarity=0.095  Sum_probs=49.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEc
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~  104 (190)
                      -+++.|+| +|..+..-++.+...- -.+|.+.+|+++........+....++....++-.++...+.|+|+.+
T Consensus       128 a~~l~iiG-~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~  200 (340)
T d1x7da_         128 ARKMALIG-NGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTV  200 (340)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEEC
T ss_pred             CceEEEEc-ccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeec
Confidence            37899999 8899998888887652 368999999766655555555444466776665555555555555543

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.21  E-value=0.62  Score=32.33  Aligned_cols=39  Identities=23%  Similarity=0.259  Sum_probs=31.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHH--------------------hcCCCeEEEEcCCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLM--------------------ENEKNEVIVVDNYFTG   69 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~--------------------~~~~~~v~~~~r~~~~   69 (190)
                      ..+++|+|+| +|.++..+++.|+                    .++-.+|.+++|+...
T Consensus        37 ~~gk~VvVIG-gGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~   95 (216)
T d1lqta1          37 LSGARAVVIG-NGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL   95 (216)
T ss_dssp             CCSSEEEEEC-CSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             ccCceEEEEC-CCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChH
Confidence            4679999999 8999999999888                    3434689999887543

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.16  E-value=0.32  Score=32.10  Aligned_cols=37  Identities=16%  Similarity=0.050  Sum_probs=30.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      .+++|+|.| +|.+|-..+..+++.+...|.++.|++.
T Consensus        44 ~~~kVvVIG-GGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          44 IRGAVIVLG-AGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             CCSEEEEEC-SSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             CCCEEEEEC-CChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            347899998 8999999999999994467888877643

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.02  E-value=0.23  Score=32.63  Aligned_cols=31  Identities=29%  Similarity=0.437  Sum_probs=26.0

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ||+|.| +|++|-+++..|.+  +.+|+++.+.+
T Consensus         2 rVvIIG-gG~~G~e~A~~l~~--~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVG-NGPGGFELAKQLSQ--TYEVTVIDKEP   32 (167)
T ss_dssp             EEEEEC-CSHHHHHHHHHHTT--TSEEEEECSSS
T ss_pred             eEEEEC-CcHHHHHHHHHHHc--CCCEEEEeccc
Confidence            789999 89999999999864  56899987754

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.94  E-value=0.42  Score=32.49  Aligned_cols=37  Identities=22%  Similarity=0.299  Sum_probs=31.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ..++++.|.| .|.||+.+++.+..- +.+|...++...
T Consensus        42 l~~k~vgiiG-~G~IG~~va~~~~~f-g~~v~~~d~~~~   78 (184)
T d1ygya1          42 IFGKTVGVVG-LGRIGQLVAQRIAAF-GAYVVAYDPYVS   78 (184)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEECTTSC
T ss_pred             ccceeeeecc-ccchhHHHHHHhhhc-cceEEeecCCCC
Confidence            4779999999 899999999999887 899999887543

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.84  E-value=0.24  Score=30.97  Aligned_cols=38  Identities=18%  Similarity=0.204  Sum_probs=29.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcC--CCeEEEEcCCCCCC
Q 029640           32 NMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGS   70 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~--~~~v~~~~r~~~~~   70 (190)
                      .++++|.| +|++|-.++..|...+  +.+|+++.|.+...
T Consensus        20 p~~v~ivG-gG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          20 PRRVLTVG-GGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             CSEEEEEC-SSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CCeEEEEC-CcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            37899999 6999999998877652  45799998876544

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.68  E-value=0.033  Score=39.08  Aligned_cols=25  Identities=36%  Similarity=0.500  Sum_probs=22.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCe
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNE   59 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~   59 (190)
                      |+|+|.| +|.+|...+..|+++ |++
T Consensus         1 mkV~VIG-aGi~GlstA~~L~~~-G~~   25 (246)
T d1kifa1           1 MRVVVIG-AGVIGLSTALCIHER-YHS   25 (246)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHH-HTT
T ss_pred             CEEEEEC-chHHHHHHHHHHHHC-CCC
Confidence            6899999 899999999999998 543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.51  E-value=0.28  Score=32.33  Aligned_cols=37  Identities=19%  Similarity=0.115  Sum_probs=29.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ..+.+|+|.| +|.+|...++.+... +.+|+++.+++.
T Consensus        26 ~~g~~vlv~G-~G~iG~~a~~~a~~~-g~~v~~~~~~~~   62 (168)
T d1rjwa2          26 KPGEWVAIYG-IGGLGHVAVQYAKAM-GLNVVAVDIGDE   62 (168)
T ss_dssp             CTTCEEEEEC-CSTTHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             CCCCEEEEee-cccchhhhhHHHhcC-CCeEeccCCCHH
Confidence            3678999997 599999988888887 789999877443

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.29  E-value=0.34  Score=29.06  Aligned_cols=30  Identities=17%  Similarity=0.134  Sum_probs=26.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~   64 (190)
                      |||||.| +|.--.++++.|.++ .+++++..
T Consensus         1 MkVLviG-sGgREHAia~~l~~s-~~~v~~~p   30 (90)
T d1vkza2           1 VRVHILG-SGGREHAIGWAFAKQ-GYEVHFYP   30 (90)
T ss_dssp             CEEEEEE-CSHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CEEEEEC-CCHHHHHHHHHHhcC-CCeEEEec
Confidence            7899999 888899999999887 67888763

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=88.73  E-value=0.14  Score=34.41  Aligned_cols=28  Identities=21%  Similarity=0.396  Sum_probs=23.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEE
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIV   62 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~   62 (190)
                      .+|+|.| +|++|-.++..|.+. +.++.+
T Consensus         4 a~VvIIG-gG~~G~e~A~~l~~~-g~~v~i   31 (183)
T d1d7ya1           4 APVVVLG-AGLASVSFVAELRQA-GYQGLI   31 (183)
T ss_dssp             SSEEEEC-CSHHHHHHHHHHHHH-TCCSCE
T ss_pred             CCEEEEC-ccHHHHHHHHHHHhc-CCceEE
Confidence            4699999 899999999999998 544333

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.54  E-value=0.39  Score=33.69  Aligned_cols=39  Identities=15%  Similarity=0.106  Sum_probs=32.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhc--------------------CCCeEEEEcCCCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMEN--------------------EKNEVIVVDNYFTG   69 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~--------------------~~~~v~~~~r~~~~   69 (190)
                      ..+++|+|+| +|.++..+++.|++.                    +-.+|.+++|+...
T Consensus        37 ~~gk~VvVIG-gGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~   95 (225)
T d1cjca1          37 LSCDTAVILG-QGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL   95 (225)
T ss_dssp             TTSSEEEEES-CSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             ccCceEEEEC-CchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence            4689999999 899999999999983                    34789999887653

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=88.46  E-value=1.5  Score=27.53  Aligned_cols=41  Identities=17%  Similarity=0.086  Sum_probs=32.0

Q ss_pred             cccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        28 ~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      ++..+++|+|.| .|.-+-.-+..|.+- ..+|+++.|+++-.
T Consensus        26 ~~~~gk~V~VvG-gG~sA~~~A~~L~~~-a~~V~li~r~~~~~   66 (126)
T d1fl2a2          26 PLFKGKRVAVIG-GGNSGVEAAIDLAGI-VEHVTLLEFAPEMK   66 (126)
T ss_dssp             GGGBTCEEEEEC-CSHHHHHHHHHHHTT-BSEEEEECSSSSCC
T ss_pred             hhcCCceEEEEe-CCHHHHHHHHhhhcc-CCceEEEecccccc
Confidence            345899999999 577777777788887 67999998876533

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.19  E-value=0.22  Score=34.53  Aligned_cols=30  Identities=17%  Similarity=0.198  Sum_probs=24.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEc
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~   64 (190)
                      ||++++| ++..|..+.+.|++. +++|..+.
T Consensus         1 Mkiv~~~-~~~~g~~~l~~L~~~-g~~I~~Vv   30 (203)
T d2blna2           1 MKTVVFA-YHDMGCLGIEALLAA-GYEISAIF   30 (203)
T ss_dssp             CEEEEEE-CHHHHHHHHHHHHHT-TCEEEEEE
T ss_pred             CeEEEEe-cCHHHHHHHHHHHHC-CCCEEEEE
Confidence            6788887 667899999999998 78876553

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=88.19  E-value=0.31  Score=35.14  Aligned_cols=33  Identities=15%  Similarity=0.194  Sum_probs=29.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~   64 (190)
                      +++++|+|-| .|-+|+++++.|.+. |.+|++++
T Consensus        34 l~g~~v~IQG-fGnVG~~~a~~L~e~-Gakvvavs   66 (255)
T d1bgva1          34 LVGKTVALAG-FGNVAWGAAKKLAEL-GAKAVTLS   66 (255)
T ss_dssp             STTCEEEECC-SSHHHHHHHHHHHHH-TCEEEEEE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHc-CCeEEEEe
Confidence            5789999999 899999999999999 78877664

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.10  E-value=1.1  Score=29.90  Aligned_cols=77  Identities=13%  Similarity=0.046  Sum_probs=40.2

Q ss_pred             CEEEEEccc-chHHHHHHHHHHhcCC---CeEEEEcCCCCCChhhhhhh-----h--cCCceEEEeccccccccCCcCEE
Q 029640           33 MRILVTGGA-GFIGSHLVDKLMENEK---NEVIVVDNYFTGSKDNLRKW-----I--GHPRFELIRHDVTEPLLIEVDQI  101 (190)
Q Consensus        33 ~~vlItG~~-G~iG~~l~~~L~~~~~---~~v~~~~r~~~~~~~~~~~~-----~--~~~~~~~~~~D~~~~~~~~~d~v  101 (190)
                      +||.|.||+ .+.+..++..++....   .++.+++.+..........+     .  ....+......=..+.+.+.|+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            679999963 3445556666655421   47878776543211111111     1  11223332222112345789999


Q ss_pred             EEccCCCC
Q 029640          102 YHLACPAS  109 (190)
Q Consensus       102 i~~ag~~~  109 (190)
                      |..|+...
T Consensus        82 v~ta~~~~   89 (169)
T d1s6ya1          82 TTQFRVGG   89 (169)
T ss_dssp             EECCCTTH
T ss_pred             EEccccCC
Confidence            99998654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.61  E-value=0.34  Score=35.21  Aligned_cols=31  Identities=23%  Similarity=0.365  Sum_probs=27.9

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      |+|+| +|..|...+..|.++ |++|+++.+++
T Consensus         2 ViVIG-aG~aGL~aA~~L~~~-G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVG-GGISGMAAAKLLHDS-GLNVVVLEARD   32 (383)
T ss_dssp             EEEEC-CBHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             EEEEC-CCHHHHHHHHHHHhC-CCCEEEEecCC
Confidence            78999 899999999999999 89999997654

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.41  E-value=0.48  Score=33.73  Aligned_cols=35  Identities=23%  Similarity=0.280  Sum_probs=28.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      +.+++|+|-| .|-+|+++++.|.+..|..|+.+.-
T Consensus        30 l~g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vsD   64 (239)
T d1gtma1          30 LKGKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSD   64 (239)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHhcCcceeeccc
Confidence            4789999999 8999999999998764777776643

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.38  E-value=1.7  Score=27.55  Aligned_cols=55  Identities=16%  Similarity=0.198  Sum_probs=38.3

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC--hhhhhhhhcCCceEE
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--KDNLRKWIGHPRFEL   85 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~--~~~~~~~~~~~~~~~   85 (190)
                      +.++++|+|.|+ |.-+-.-+..|.+- ..+|+++.|+++-.  +.....+...+++..
T Consensus        31 ~frgk~V~VvGg-GdsA~e~A~~L~~~-a~~V~li~r~~~~ra~~~~~~~l~~~~nI~v   87 (130)
T d1vdca2          31 IFRNKPLAVIGG-GDSAMEEANFLTKY-GSKVYIIHRRDAFRASKIMQQRALSNPKIDV   87 (130)
T ss_dssp             GGTTSEEEEECC-SHHHHHHHHHHTTT-SSEEEEECSSSSCCSCHHHHHHHHTCTTEEE
T ss_pred             HhCCCEEEEEcC-chHHHHHHHHHhCC-CCcEEEEEeccccccchhhhhccccCCceEE
Confidence            569999999995 77777777777777 68999998876533  333444445555544

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=87.18  E-value=0.42  Score=35.01  Aligned_cols=33  Identities=33%  Similarity=0.417  Sum_probs=29.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      -.|+|+| +|..|...+..|.+. |.+|.++.+.+
T Consensus         8 ~dV~IIG-AG~sGl~~a~~L~~~-G~~v~i~Ek~~   40 (298)
T d1w4xa1           8 VDVLVVG-AGFSGLYALYRLREL-GRSVHVIETAG   40 (298)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             CCEEEEC-ccHHHHHHHHHHHhC-CCCEEEEEcCC
Confidence            5699999 899999999999998 88999998754

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.69  E-value=0.17  Score=32.28  Aligned_cols=90  Identities=14%  Similarity=0.004  Sum_probs=51.7

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhhcCCceEEEeccccccc-cCCcCEEEEccCCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDVTEPL-LIEVDQIYHLACPASP  110 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~-~~~~d~vi~~ag~~~~  110 (190)
                      -+++|.| +|.+|+.+++.+..+.++++.++....+.. ...+      .++..+..|-.... -..+++++-+..    
T Consensus         4 ~~v~I~G-aG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I------~Gi~V~~~~~l~~~~~~~i~iai~~i~----   72 (126)
T d2dt5a2           4 WGLCIVG-MGRLGSALADYPGFGESFELRGFFDVDPEKVGRPV------RGGVIEHVDLLPQRVPGRIEIALLTVP----   72 (126)
T ss_dssp             EEEEEEC-CSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEE------TTEEEEEGGGHHHHSTTTCCEEEECSC----
T ss_pred             ceEEEEc-CCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEE------CCEEEecHHHHHHHHhhcccEEEEeCC----
Confidence            3799999 899999999988666567777775433322 1111      24555544332221 123555554441    


Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHcCCe-EEEEec
Q 029640          111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTST  147 (190)
Q Consensus       111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~i~vSS  147 (190)
                      .              .....+++.|.+.+++ +..++.
T Consensus        73 ~--------------~~~~~I~d~l~~~gIk~I~~f~~   96 (126)
T d2dt5a2          73 R--------------EAAQKAADLLVAAGIKGILNFAP   96 (126)
T ss_dssp             H--------------HHHHHHHHHHHHHTCCEEEECSS
T ss_pred             H--------------HHHHHHHHHHHHcCCCEEeecCc
Confidence            0              1124577788888875 554443

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=86.42  E-value=2.5  Score=29.14  Aligned_cols=111  Identities=13%  Similarity=0.126  Sum_probs=53.7

Q ss_pred             CEEEEEcccchHHH-HHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhhcCC--ceEEEecccccc-ccCCcCEEEEccCC
Q 029640           33 MRILVTGGAGFIGS-HLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIGHP--RFELIRHDVTEP-LLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~-~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~-~~~~~d~vi~~ag~  107 (190)
                      -+|.|.| .|.+|+ +++..+....+.++..+ +++.+........ .+-.  .+.. .-|+.+. ...++|+|+-+...
T Consensus        34 iriaiIG-~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~-~~i~~~~~~~-~~d~~ell~~~~iD~V~I~tp~  110 (221)
T d1h6da1          34 FGYAIVG-LGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAE-YGVDPRKIYD-YSNFDKIAKDPKIDAVYIILPN  110 (221)
T ss_dssp             EEEEEEC-CSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHH-TTCCGGGEEC-SSSGGGGGGCTTCCEEEECSCG
T ss_pred             EEEEEEc-CcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHh-hccccccccc-cCchhhhcccccceeeeeccch
Confidence            4899999 789996 56677666545666644 4433332222221 1111  1111 1233221 12368888765421


Q ss_pred             CCCc-cc----ccC----chhHHHHHHHHHHHHHHHHHHcCCeEEEEec
Q 029640          108 ASPI-FY----KYN----PVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus       108 ~~~~-~~----~~~----~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS  147 (190)
                      .... ..    +..    -++-+..|..-...+.++++++++.+ ++.-
T Consensus       111 ~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~~~-~v~~  158 (221)
T d1h6da1         111 SLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKL-MIGY  158 (221)
T ss_dssp             GGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCE-EECC
T ss_pred             hhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCCcE-EEee
Confidence            1100 00    000    00113345666677888888877433 3443

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=86.30  E-value=0.79  Score=30.59  Aligned_cols=77  Identities=19%  Similarity=0.256  Sum_probs=40.3

Q ss_pred             CCEEEEEcccchHHHH-HHHHHHhc-C---CCeEEEEcCCCCCChh---hhhhhh--cCCceEEEeccccccccCCcCEE
Q 029640           32 NMRILVTGGAGFIGSH-LVDKLMEN-E---KNEVIVVDNYFTGSKD---NLRKWI--GHPRFELIRHDVTEPLLIEVDQI  101 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~-l~~~L~~~-~---~~~v~~~~r~~~~~~~---~~~~~~--~~~~~~~~~~D~~~~~~~~~d~v  101 (190)
                      ..||.|.|| |.+|.. ++..++.+ .   ..++.+++.+.+....   .+....  ...........=..+++.+.|+|
T Consensus         3 ~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V   81 (167)
T d1u8xx1           3 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV   81 (167)
T ss_dssp             CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred             CceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence            457999997 445543 44455543 1   2478888875443321   111111  01223332221122445789999


Q ss_pred             EEccCCCC
Q 029640          102 YHLACPAS  109 (190)
Q Consensus       102 i~~ag~~~  109 (190)
                      |..+|...
T Consensus        82 vitag~~~   89 (167)
T d1u8xx1          82 MAHIRVGK   89 (167)
T ss_dssp             EECCCTTH
T ss_pred             EECCCcCC
Confidence            99998643

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.04  E-value=0.62  Score=31.96  Aligned_cols=36  Identities=22%  Similarity=0.286  Sum_probs=30.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ..+|+|+|.| +|.-|-.++..+.+. +.++..+.|+.
T Consensus        30 ~~gK~V~VvG-~G~Sa~dia~~~~~~-~~~~~~~~~~~   65 (235)
T d1w4xa2          30 FSGQRVGVIG-TGSSGIQVSPQIAKQ-AAELFVFQRTP   65 (235)
T ss_dssp             CBTCEEEEEC-CSHHHHHHHHHHHHH-BSEEEEEESSC
T ss_pred             CCCCEEEEEC-CCccHHHHHHHHHhh-hcccccccccc
Confidence            5889999999 899999999999999 67766666543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.78  E-value=0.67  Score=31.98  Aligned_cols=35  Identities=20%  Similarity=0.329  Sum_probs=29.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCC
Q 029640           33 MRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFT   68 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~   68 (190)
                      .+|+|+| +|-.|...+..|++.+ +++|+++.+.+.
T Consensus         2 ~kv~iIG-aGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVG-SGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEEC-ccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            3799999 8999999999998763 679999988754

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=85.41  E-value=0.43  Score=35.47  Aligned_cols=31  Identities=16%  Similarity=0.201  Sum_probs=28.1

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      -|+|.| +|+-|..++..|.+. |.+|.++-+.
T Consensus         4 ~VIVVG-sG~aG~v~A~rLaea-G~~VlvLEaG   34 (367)
T d1n4wa1           4 PAVVIG-TGYGAAVSALRLGEA-GVQTLMLEMG   34 (367)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             eEEEeC-cCHHHHHHHHHHHHC-cCeEEEEecC
Confidence            388999 999999999999998 8999999875

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=85.01  E-value=2.5  Score=27.98  Aligned_cols=105  Identities=16%  Similarity=0.130  Sum_probs=51.3

Q ss_pred             CCCEEEEEcccchHHHHH-HHHHHhcCC-CeEEEE-cCCCCCChhhhhhhhcCCceEEEecccccc-ccCCcCEEEEccC
Q 029640           31 SNMRILVTGGAGFIGSHL-VDKLMENEK-NEVIVV-DNYFTGSKDNLRKWIGHPRFELIRHDVTEP-LLIEVDQIYHLAC  106 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l-~~~L~~~~~-~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~d~vi~~ag  106 (190)
                      +..++.|.| +|.+|+.+ +..+.+.+. .++..+ +++.+. ...+....+   ...+..|..+. ...++|+|+-+..
T Consensus         2 kkirigiIG-~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~-~~~~~~~~~---~~~~~~~~~ell~~~~id~v~I~tp   76 (181)
T d1zh8a1           2 RKIRLGIVG-CGIAARELHLPALKNLSHLFEITAVTSRTRSH-AEEFAKMVG---NPAVFDSYEELLESGLVDAVDLTLP   76 (181)
T ss_dssp             CCEEEEEEC-CSHHHHHTHHHHHHTTTTTEEEEEEECSSHHH-HHHHHHHHS---SCEEESCHHHHHHSSCCSEEEECCC
T ss_pred             CCcEEEEEc-CCHHHHHHHHHHHHhCCCCeEEEEEEeccHhh-hhhhhcccc---ccceeeeeeccccccccceeecccc
Confidence            345899999 89999874 667766533 356654 443222 222222221   22222333322 2346898876542


Q ss_pred             CCCCccc--c----cC----chhHHHHHHHHHHHHHHHHHHcCCe
Q 029640          107 PASPIFY--K----YN----PVKTIKTNVIGTLNMLGLAKRVGAR  141 (190)
Q Consensus       107 ~~~~~~~--~----~~----~~~~~~~n~~~~~~l~~~~~~~~~~  141 (190)
                       ......  .    ..    -++-+..|..-...+.+.+++++..
T Consensus        77 -~~~h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          77 -VELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             -GGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             -ccccccccccccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence             111000  0    00    0111334555566778888887754

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=84.81  E-value=0.63  Score=32.39  Aligned_cols=34  Identities=21%  Similarity=0.202  Sum_probs=29.7

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      |+|.| +|..|...+..|.++ |.+|.++.+.+...
T Consensus         5 ViIIG-aG~aGl~aA~~la~~-G~~V~liEk~~~~g   38 (251)
T d2i0za1           5 VIVIG-GGPSGLMAAIGAAEE-GANVLLLDKGNKLG   38 (251)
T ss_dssp             EEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSSSSC
T ss_pred             EEEEC-cCHHHHHHHHHHHHC-CCcEEEEeCCCCCC
Confidence            88999 899999999999999 89999998865443

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.79  E-value=0.84  Score=30.17  Aligned_cols=74  Identities=26%  Similarity=0.316  Sum_probs=40.1

Q ss_pred             CEEEEEcccchHHHHHHHH-HHhc----CCCeEEEEcCCCCCChhhhhhhh---cCCceEEEeccccccccCCcCEEEEc
Q 029640           33 MRILVTGGAGFIGSHLVDK-LMEN----EKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~-L~~~----~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~d~vi~~  104 (190)
                      |||.|.|| |.+|...+-. |+..    ...++.+++.+.+... ...++.   ...........-..++..+.|+||..
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~-~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVit   78 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQK-IVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQ   78 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHH-HHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHH-HHHHHHHhhhccCceEEEecCcccccCCCCEEEEe
Confidence            67999996 4466555533 3332    1358999887544322 111110   11222332222223456789999999


Q ss_pred             cCCC
Q 029640          105 ACPA  108 (190)
Q Consensus       105 ag~~  108 (190)
                      ||..
T Consensus        79 a~~~   82 (162)
T d1up7a1          79 FRPG   82 (162)
T ss_dssp             CCTT
T ss_pred             cccC
Confidence            9854

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=84.08  E-value=1.2  Score=28.07  Aligned_cols=39  Identities=21%  Similarity=0.134  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029640           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      +.++++|+|.| .|..+-.-+..|.+- ..+|+++.|+++-
T Consensus        24 ~~~~k~V~VvG-gGdsA~e~A~~L~~~-a~~V~li~r~~~~   62 (126)
T d1trba2          24 FYRNQKVAVIG-GGNTAVEEALYLSNI-ASEVHLIHRRDGF   62 (126)
T ss_dssp             GGTTSEEEEEC-SSHHHHHHHHHHTTT-SSEEEEECSSSSC
T ss_pred             HhCCCEEEEEC-CCHHHHHHHHHHhhc-CCcEEEEeecccc
Confidence            34899999999 588888888888887 7899999887653

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.34  E-value=0.7  Score=32.69  Aligned_cols=34  Identities=18%  Similarity=0.278  Sum_probs=27.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEc
Q 029640           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~   64 (190)
                      +++++|.|-| .|-+|+++++.|.+..|..|+.++
T Consensus        29 l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vs   62 (234)
T d1b26a1          29 PKKATVAVQG-FGNVGQFAALLISQELGSKVVAVS   62 (234)
T ss_dssp             TTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEee
Confidence            4789999998 999999999999754377777664

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=83.12  E-value=0.15  Score=33.34  Aligned_cols=61  Identities=8%  Similarity=0.090  Sum_probs=30.9

Q ss_pred             EEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029640           36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        36 lItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      -+.| +|-+|+++++.|.+. ++.+.+..|+.+....... ...   ..  ..+. .+.....|+||-+.
T Consensus         3 gfIG-~G~mg~~l~~~L~~~-~~~~~v~~R~~~~~~~l~~-~~~---~~--~~~~-~~~~~~~DiVil~v   63 (153)
T d2i76a2           3 NFVG-TGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAE-VYG---GK--AATL-EKHPELNGVVFVIV   63 (153)
T ss_dssp             EEES-CCHHHHHHHHTTC-----CCCEECSSHHHHHHHHH-HTC---CC--CCSS-CCCCC---CEEECS
T ss_pred             EEEe-CcHHHHHHHHHHHhC-CCEEEEEeCChhhhcchhh-ccc---cc--ccch-hhhhccCcEEEEec
Confidence            4667 999999999988554 5555677775443333222 111   11  1122 23345689998776

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=82.74  E-value=0.74  Score=33.88  Aligned_cols=32  Identities=22%  Similarity=0.325  Sum_probs=28.5

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      -|+|.| +|.-|..++..|.+. |.+|.++-+..
T Consensus         6 DviIVG-sG~aG~v~A~~La~~-G~kVlvLEaG~   37 (379)
T d2f5va1           6 DVVIVG-SGPIGCTYARELVGA-GYKVAMFDIGE   37 (379)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSC
T ss_pred             cEEEEC-cCHHHHHHHHHHhhC-CCeEEEEecCC
Confidence            388999 999999999999998 89999997753

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=82.66  E-value=0.78  Score=33.08  Aligned_cols=33  Identities=18%  Similarity=0.264  Sum_probs=29.2

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      -|+|.| +|..|...+..|.++ |.+|.++.+.+.
T Consensus        18 DVlVIG-~G~aGl~aA~~la~~-G~~V~lvEK~~~   50 (308)
T d1y0pa2          18 DVVVVG-SGGAGFSAAISATDS-GAKVILIEKEPV   50 (308)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence            389999 899999999999999 899999987543

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=82.60  E-value=0.91  Score=32.90  Aligned_cols=32  Identities=25%  Similarity=0.443  Sum_probs=22.2

Q ss_pred             CEEEEEcc-c-chH--HHHHHHHHHhcCCCeEEEEcC
Q 029640           33 MRILVTGG-A-GFI--GSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        33 ~~vlItG~-~-G~i--G~~l~~~L~~~~~~~v~~~~r   65 (190)
                      |||+|++| + |.+  +..|+++|.++ |++|..+..
T Consensus         1 kkili~~~GtGGHv~~a~al~~~L~~~-G~eV~~i~~   36 (351)
T d1f0ka_           1 KRLMVMAGGTGGHVFPGLAVAHHLMAQ-GWQVRWLGT   36 (351)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHTT-TCEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHHHHhC-CCEEEEEEe
Confidence            57777764 3 444  44588999888 899877654

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=82.13  E-value=0.72  Score=34.25  Aligned_cols=31  Identities=23%  Similarity=0.268  Sum_probs=28.0

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      -|+|.| +|+-|..++..|.+. |.+|.++-+.
T Consensus         9 dvIVVG-sG~aG~v~A~rLaea-G~~VlvLEaG   39 (370)
T d3coxa1           9 PALVIG-SGYGGAVAALRLTQA-GIPTQIVEMG   39 (370)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence            388999 899999999999998 8999999875

>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein YckF
species: Bacillus subtilis [TaxId: 1423]

Probab=81.84  E-value=5  Score=26.61  Aligned_cols=78  Identities=17%  Similarity=0.218  Sum_probs=48.1

Q ss_pred             cCCCEEEEEc--ccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029640           30 QSNMRILVTG--GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        30 ~~~~~vlItG--~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      ...++|+++|  .++.++..+...|... |..+..+.                        |+.......-|++|-....
T Consensus        35 ~~a~~I~i~G~G~S~~~a~~~~~~l~~l-g~~~~~~~------------------------d~~~~~~~~~Dl~I~iS~s   89 (186)
T d1m3sa_          35 LSSHQIFTAGAGRSGLMAKSFAMRLMHM-GFNAHIVG------------------------EILTPPLAEGDLVIIGSGS   89 (186)
T ss_dssp             HHCSCEEEECSHHHHHHHHHHHHHHHHT-TCCEEETT------------------------STTCCCCCTTCEEEEECSS
T ss_pred             HcCCeEEEEECcHHHHHHHHHHHHHHhc-cCCCCcCC------------------------hhhcccCCCCCEEEEecCc
Confidence            3457899987  5677788888888777 55554431                        1111123345777766532


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEec
Q 029640          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS  147 (190)
                      ..      .         .-+..+++.+++.++++|.+++
T Consensus        90 G~------t---------~~~i~~~~~ak~~g~~iI~IT~  114 (186)
T d1m3sa_          90 GE------T---------KSLIHTAAKAKSLHGIVAALTI  114 (186)
T ss_dssp             SC------C---------HHHHHHHHHHHHTTCEEEEEES
T ss_pred             cc------h---------hhhHHHHHHHHHCCCCEEEEec
Confidence            11      1         1134678889999998887765

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=81.28  E-value=1.4  Score=27.99  Aligned_cols=39  Identities=23%  Similarity=0.249  Sum_probs=32.3

Q ss_pred             CCEEEEEcc----------cchHHHHHHHHHHhcCCCeEEEEcCCCCCCh
Q 029640           32 NMRILVTGG----------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSK   71 (190)
Q Consensus        32 ~~~vlItG~----------~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~   71 (190)
                      -++|+|.|+          --|-+.+.+++|.+. |++++.+..+++...
T Consensus         7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~-g~~~iliN~NP~TVs   55 (127)
T d1a9xa3           7 IKSILILGAGPIVIGQACEFDYSGAQACKALREE-GYRVINVNSNPATIM   55 (127)
T ss_dssp             CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHH-TCEEEEECSCTTCGG
T ss_pred             CCEEEEECCCcCcccccchhHHHHHHHHHHHHHc-CCeEEEecCchHhhh
Confidence            489999997          347899999999999 899999887766543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=81.08  E-value=0.97  Score=30.73  Aligned_cols=30  Identities=10%  Similarity=0.200  Sum_probs=27.1

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029640           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      ++|+| +|..|...+..+.+. |.+|.++.+.
T Consensus         5 vvVIG-~G~aG~~aA~~a~~~-G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIG-GGSGGIASINRAAMY-GQKCALIEAK   34 (217)
T ss_dssp             EEEEC-CSHHHHHHHHHHHTT-TCCEEEEESS
T ss_pred             EEEEC-CCHHHHHHHHHHHHC-CCEEEEEecc
Confidence            78999 799999999999999 8899999764

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=80.05  E-value=1.3  Score=32.14  Aligned_cols=35  Identities=29%  Similarity=0.341  Sum_probs=28.8

Q ss_pred             EEEEEcccchHHHHHHHHHHh----cCCCeEEEEcCCCCC
Q 029640           34 RILVTGGAGFIGSHLVDKLME----NEKNEVIVVDNYFTG   69 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~----~~~~~v~~~~r~~~~   69 (190)
                      -|+|.| +|-.|..++..|++    +.|.+|.++.|++..
T Consensus         9 DV~IvG-aG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           9 DVLIVG-AGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CEEEEC-cCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            389999 89999999999974    338899999886543