Citrus Sinensis ID: 029650

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MDAKRKNKMVKVVKKEEATAAFVDSDDDDDDGGEYDLCPQEEGDDNRNSSSKKNKGSSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKNAAESNGEGSSCKGTGTGTQLKDLVCGKLDDKGRIKISIQENATCKHFQIR
Secondary Structure (PSIPRED)
ccHHHHccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccEEEEccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHEEEEEcccccccEEEccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHccEHHHcccccEEEEcccHHHHHHHcHHHccHHHHcHccHHHHHHHHccHHHcccccccccccccccccccccccccccccccccccccEEEEEcccccccccccc
Coil and Loop (DISEMBL)
mdakrknkMVKVVKKEEAtaafvdsddddddggeydlcpqeegddnrnssskknkgssggsglrscqvdkcgadlsdakqyhrrhkvCEVHAKAQVVLMGGIRQRFCQQCsrfhelsefdetKRSCRRRLAGHnerrrknaaesngegssckgtgtgtqlkdlvcgklddkgrikisiqenatckhfqir
Flexible Loop (DISEMBL)
mdakrknkmvkvvkkeeataafvdsddddddGGEYDLCpqeegddnrnssskknkgssggsglrscQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFhelsefdetkrscrrrlaghnerrrknaaesngegssckgtgtgtqlkdlvcgklddkgrikisiqenatckhfqir
Low Complexity Region (SEG)
MDakrknkmvkvvkkeeataafvdsddddddGGEYDLCPQEEGDDNRnssskknkgssggsgLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKNAAESNGEGSSCKGTGTGTQLKDLVCGKLDDKGRIKISIQENATCKHFQIR
Disordered region (IsUnstruct)
*****************************************************************************AKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHEL*******************************************LKDLVCGKLDDKGRIKISIQENATC******
Disordered Region (DISOPRED)
*******************************************************************VDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKR******************************************************************
Disordered Region (DISEMBL)
***********VVKKEEATAAFVDSDDDDDDGGEYDLCPQ*************************CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRSCRRRLA*********************GTGTGTQLKDLVCGKLDDKGRIKISIQENATCKHFQIR
Disordered Region (DISPRO)
****RKNKMVKVVKKEE*TA*****************************************GLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRSCRRR*******************************KD*******DKGRIKISIQENATC******
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDAKRKNKMVKVVKKEEATAAFVDSDDDDDDGGEYDLCPQEEGDDNRNSSSKKNKGSSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKNAAESNGEGSSCKGTGTGTQLKDLVCGKLDDKGRIKISIQENATCKHFQIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
Q9S7A9	174	Squamosa promoter-binding	yes	no	0.721	0.787	0.530	1e-34
Q9S7P5	927	Squamosa promoter-binding	no	no	0.736	0.151	0.526	4e-34
Q9S758	181	Squamosa promoter-binding	no	no	0.473	0.497	0.711	4e-33
Q38741	131	Squamosa promoter-binding	N/A	no	0.542	0.786	0.634	4e-33
Q6Z461	216	Squamosa promoter-binding	yes	no	0.452	0.398	0.689	1e-30
Q38740	171	Squamosa promoter-binding	N/A	no	0.447	0.497	0.717	1e-30
Q8RY95	1035	Squamosa promoter-binding	no	no	0.468	0.085	0.696	7e-30
P93015	131	Squamosa promoter-binding	no	no	0.473	0.687	0.677	2e-29
Q9SMX9	881	Squamosa promoter-binding	no	no	0.447	0.096	0.682	3e-29
Q94JW8	405	Squamosa promoter-binding	no	no	0.584	0.274	0.537	3e-29

>sp|Q9S7A9|SPL4_ARATH Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana GN=SPL4 PE=1 SV=1

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/149 (53%), Positives = 101/149 (67%), Gaps = 12/149 (8%)

Query: 44  DDNRNSSSKKNKGSSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIR 103
           D  R S    N+G S    LR CQVD+C AD+ +AK YHRRHKVCEVHAKA  V + G+ 
Sbjct: 36  DRVRGSRGSINRGGS----LRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLN 91

Query: 104 QRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKNAAESN-GEGSSCKGTGTGTQLKD 162
           QRFCQQCSRFH+L EFDE KRSCRRRLAGHNERRRK++ ES  GEGS  +G      +++
Sbjct: 92  QRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGESTYGEGSGRRGINGQVVMQN 151

Query: 163 LVCGKLDDKGRIKISI-QENATCKHFQIR 190
                  ++ R+++++   N++ K  QIR
Sbjct: 152 ------QERSRVEMTLPMPNSSFKRPQIR 174

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9S7P5|SPL12_ARATH Squamosa promoter-binding-like protein 12 OS=Arabidopsis thaliana GN=SPL12 PE=1 SV=1

 Score =  144 bits (363), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 80/152 (52%), Positives = 94/152 (61%), Gaps = 12/152 (7%)

Query: 1   MDAKRKNKMVKVVKKEEATAAFVDSDDDDDDGGEYDLCPQEEGDDNRNSSSKKNKGSSGG 60
           M+ K+K + V VV  EE        +  DDD     L     G +N   +  K     GG
Sbjct: 70  MEKKKKRRAVTVVAMEE-------DNLKDDDAHRLTL---NLGGNNIEGNGVKKTKLGGG 119

Query: 61  SGLRS--CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSE 118
              R+  CQVD CGADLS  K YHRRHKVCE+H+KA   L+GGI QRFCQQCSRFH L E
Sbjct: 120 IPSRAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEE 179

Query: 119 FDETKRSCRRRLAGHNERRRKNAAESNGEGSS 150
           FDE KRSCRRRLAGHN+RRRK   ++ G G+S
Sbjct: 180 FDEGKRSCRRRLAGHNKRRRKANPDTIGNGTS 211

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S758|SPL5_ARATH Squamosa promoter-binding-like protein 5 OS=Arabidopsis thaliana GN=SPL5 PE=2 SV=1

 Score =  140 bits (354), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 75/90 (83%)

Query: 64  RSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETK 123
           R CQVD+C  +L++AKQY+RRH+VCEVHAKA    + G+RQRFCQQCSRFHEL EFDE K
Sbjct: 61  RLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAK 120

Query: 124 RSCRRRLAGHNERRRKNAAESNGEGSSCKG 153
           RSCRRRLAGHNERRRK + +S GEGS  +G
Sbjct: 121 RSCRRRLAGHNERRRKISGDSFGEGSGRRG 150

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Promotes both vegetative phase change and flowering.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38741|SBP1_ANTMA Squamosa promoter-binding protein 1 OS=Antirrhinum majus GN=SBP1 PE=2 SV=1

 Score =  140 bits (354), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 66/104 (63%), Positives = 84/104 (80%), Gaps = 1/104 (0%)

Query: 43  GDDNRNSSSKKNKGS-SGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGG 101
           G+D++ + +    G  + GS  RSCQV+ C A++++AK YHRRHKVCE HAKA VVL  G
Sbjct: 28  GEDSKKTRALTPSGKRASGSTQRSCQVENCAAEMTNAKPYHRRHKVCEFHAKAPVVLHSG 87

Query: 102 IRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKNAAESN 145
           ++QRFCQQCSRFHELSEFDE KRSCRRRLAGHNERRRK++ +++
Sbjct: 88  LQQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSHDTH 131

Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Antirrhinum majus (taxid: 4151)

>sp|Q6Z461|SPL13_ORYSJ Squamosa promoter-binding-like protein 13 OS=Oryza sativa subsp. japonica GN=SPL13 PE=2 SV=1

 Score =  132 bits (333), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 60/87 (68%), Positives = 76/87 (87%), Gaps = 1/87 (1%)

Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRS 125
           CQV++CG DLS+A +Y+RRHKVC+ H+K  VVL+ G+RQRFCQQCSRFHEL+EFD+ KRS
Sbjct: 110 CQVERCGVDLSEAGRYNRRHKVCQTHSKEPVVLVAGLRQRFCQQCSRFHELTEFDDAKRS 169

Query: 126 CRRRLAGHNERRRKNAAESNGEGSSCK 152
           CRRRLAGHNERRRK+AA++   G +C+
Sbjct: 170 CRRRLAGHNERRRKSAADT-AHGENCR 195

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38740|SBP2_ANTMA Squamosa promoter-binding protein 2 OS=Antirrhinum majus GN=SBP2 PE=2 SV=1

 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/85 (71%), Positives = 74/85 (87%)

Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRS 125
           C V+ CGADL + K+Y++RH+VCEVHAKA VV + G+ QRFCQQCSRFH+LSEFD+TKRS
Sbjct: 85  CLVENCGADLRNCKKYYQRHRVCEVHAKAPVVSVEGLMQRFCQQCSRFHDLSEFDQTKRS 144

Query: 126 CRRRLAGHNERRRKNAAESNGEGSS 150
           CRRRLAGHNERRRK++ ES+ EG S
Sbjct: 145 CRRRLAGHNERRRKSSLESHKEGRS 169

Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Antirrhinum majus (taxid: 4151)

>sp|Q8RY95|SPL14_ARATH Squamosa promoter-binding-like protein 14 OS=Arabidopsis thaliana GN=SPL14 PE=2 SV=3

 Score =  130 bits (326), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 62/89 (69%), Positives = 66/89 (74%)

Query: 51  SKKNKGSSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQC 110
           +KK +  S G     CQVD C  DLS AK YHRRHKVCEVH+KA   L+G   QRFCQQC
Sbjct: 105 NKKVRSGSPGGNYPMCQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQC 164

Query: 111 SRFHELSEFDETKRSCRRRLAGHNERRRK 139
           SRFH LSEFDE KRSCRRRLAGHN RRRK
Sbjct: 165 SRFHLLSEFDEGKRSCRRRLAGHNRRRRK 193

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development.

Arabidopsis thaliana (taxid: 3702)

>sp|P93015|SPL3_ARATH Squamosa promoter-binding-like protein 3 OS=Arabidopsis thaliana GN=SPL3 PE=1 SV=2

 Score =  128 bits (322), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/93 (67%), Positives = 74/93 (79%), Gaps = 3/93 (3%)

Query: 52  KKNKG-SSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQC 110
           KK KG ++  SG+  CQV+ C AD+S AKQYH+RHKVC+ HAKA  V + G+ QRFCQQC
Sbjct: 41  KKQKGKATSSSGV--CQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQC 98

Query: 111 SRFHELSEFDETKRSCRRRLAGHNERRRKNAAE 143
           SRFH LSEFDE KRSCRRRLAGHNERRRK+  +
Sbjct: 99  SRFHALSEFDEAKRSCRRRLAGHNERRRKSTTD 131

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. Promotes both vegetative phase change and flowering. Regulates phase-specific patterns of leaf epidermal differentiation and flowering time, but does not seem to affect leaf shape.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SMX9|SPL1_ARATH Squamosa promoter-binding-like protein 1 OS=Arabidopsis thaliana GN=SPL1 PE=1 SV=2

 Score =  128 bits (321), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 64/85 (75%)

Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRS 125
           CQV+ C ADLS  K YHRRHKVCE+H+KA    +GGI QRFCQQCSRFH L EFDE KRS
Sbjct: 106 CQVENCEADLSKVKDYHRRHKVCEMHSKATSATVGGILQRFCQQCSRFHLLQEFDEGKRS 165

Query: 126 CRRRLAGHNERRRKNAAESNGEGSS 150
           CRRRLAGHN+RRRK   E    G+ 
Sbjct: 166 CRRRLAGHNKRRRKTNPEPGANGNP 190

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JW8|SPL6_ARATH Squamosa promoter-binding-like protein 6 OS=Arabidopsis thaliana GN=SPL6 PE=2 SV=2

 Score =  127 bits (320), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/121 (53%), Positives = 79/121 (65%), Gaps = 10/121 (8%)

Query: 21  AFVDSDDDDDDGGEYDLCPQEEGDDNRNSSSKKNKGSSGGSGLRSCQVDKCGADLSDAKQ 80
           +F+D  +DDDD                   SKK++ S+  S    CQV  C  DLS +K 
Sbjct: 89  SFLDLGNDDDDTSSRGFA----------LPSKKSRASNLCSQNPLCQVYGCSKDLSSSKD 138

Query: 81  YHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKN 140
           YH+RH+VCE H+K  VV++ G+ QRFCQQCSRFH LSEFD+ KRSCRRRLAGHNERRRK 
Sbjct: 139 YHKRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKRSCRRRLAGHNERRRKP 198

Query: 141 A 141
           A
Sbjct: 199 A 199

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
62856979	175	squamosa promoter binding-like protein [	0.826	0.897	0.708	3e-55
225446416	169	PREDICTED: squamosa promoter-binding-lik	0.868	0.976	0.616	7e-52
255553683	198	Squamosa promoter-binding protein, putat	0.9	0.863	0.616	9e-52
302399065	188	SPL domain class transcription factor [M	0.910	0.920	0.568	2e-45
63115357	108	putative squamosa promoter-binding prote	0.568	1.0	0.816	3e-44
224117134	161	predicted protein [Populus trichocarpa]	0.652	0.770	0.703	1e-42
356549906	124	PREDICTED: LOW QUALITY PROTEIN: squamosa	0.647	0.991	0.674	4e-41
449456643	202	PREDICTED: squamosa promoter-binding-lik	0.715	0.673	0.611	3e-40
255584731	198	Squamosa promoter-binding protein, putat	0.652	0.626	0.661	6e-40
225461502	204	PREDICTED: squamosa promoter-binding-lik	0.621	0.578	0.640	8e-38

>gi|62856979|gb|AAY16440.1| squamosa promoter binding-like protein [Betula platyphylla]

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 127/158 (80%), Gaps = 1/158 (0%)

Query: 33  GEYDLCPQEEGDDNRNSSSKKNKGSSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHA 92
            E D    EE  ++     KK KG  G  G R CQ +KC ADLSD KQYH+RHKVCE HA
Sbjct: 19  AEEDQVSDEELVESGVEEEKKKKGVVGSGGKRCCQAEKCTADLSDGKQYHKRHKVCEHHA 78

Query: 93  KAQVVLMGGIRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKNAAESNGEGSSCK 152
           KAQVVL+GG+RQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRR+N AES+ EGSS K
Sbjct: 79  KAQVVLVGGMRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRENTAESHAEGSSRK 138

Query: 153 GTGTGTQLKDLVCGKLDDKGRIKISIQENATCKHFQIR 190
           GTGT  QLKD+VCG++DD+GRI+I+I EN+T KHFQIR
Sbjct: 139 GTGT-HQLKDIVCGQVDDRGRIQITIHENSTYKHFQIR 175

Source: Betula platyphylla

Species: Betula platyphylla

Genus: Betula

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446416|ref|XP_002275728.1| PREDICTED: squamosa promoter-binding-like protein 4 [Vitis vinifera] gi|302143318|emb|CBI21879.3| unnamed protein product [Vitis vinifera]

 Score =  208 bits (530), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 111/180 (61%), Positives = 133/180 (73%), Gaps = 15/180 (8%)

Query: 11  KVVKKEEATAAFVDSDDDDDDGGEYDLCPQEEGDDNRNSSSKKNKGSSGGSGLRSCQVDK 70
           K+VKKE      VD DD          C +   DD +  ++    G    + +R CQ ++
Sbjct: 5   KMVKKEMEGTEEVDEDDQLG-------CSE---DDKKKKAAAGGSGKKAAAAMRCCQAER 54

Query: 71  CGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRSCRRRL 130
           C ADL+DAKQYHRRHKVCE HAKAQVV++GGIRQRFCQQCSRFHELSEFDE KRSCRRRL
Sbjct: 55  CTADLTDAKQYHRRHKVCEHHAKAQVVVVGGIRQRFCQQCSRFHELSEFDEAKRSCRRRL 114

Query: 131 AGHNERRRKNAAESNGEGSSCKGTGTGTQLKDLVCGKLDDKGRIKISIQENATCKHFQIR 190
           AGHNERRRKN+A+ + EGSS K    GTQLK++VCG++DD+GRI+I+IQENA  KHFQIR
Sbjct: 115 AGHNERRRKNSAD-HAEGSSRK----GTQLKEIVCGQVDDRGRIQITIQENAAYKHFQIR 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553683|ref|XP_002517882.1| Squamosa promoter-binding protein, putative [Ricinus communis] gi|223542864|gb|EEF44400.1| Squamosa promoter-binding protein, putative [Ricinus communis]

 Score =  208 bits (529), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 119/193 (61%), Positives = 137/193 (70%), Gaps = 22/193 (11%)

Query: 11  KVVKKEEATAAFVDSDDDDDDGGEYDLCPQEEGDDNRNSSSKKNKGSSGGSG-------- 62
           +VVK+E A     +  DDD+  G  +L     G D    S+KK K  SG +G        
Sbjct: 15  RVVKEELAHEIDRELSDDDEYLGMGNL-----GGDF--ESNKKKKVVSGDAGGRKKGSFG 67

Query: 63  -----LRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELS 117
                +R CQ +KC ADL+DAK YHRRHKVCE HAKAQ+VL+ GIRQRFCQQCSRFHEL 
Sbjct: 68  GGGVGMRCCQAEKCMADLNDAKPYHRRHKVCEYHAKAQIVLVAGIRQRFCQQCSRFHELI 127

Query: 118 EFDETKRSCRRRLAGHNERRRKNAAESNGEGSSCKGTGTGTQLKDLVCGKLDDKGRIKIS 177
           EFDETKRSCRRRLAGHNERRRKN  ES+ EGSS +  GTGTQLKD+V G++DD GRIKI+
Sbjct: 128 EFDETKRSCRRRLAGHNERRRKNTTESHTEGSSHR--GTGTQLKDMVFGQVDDSGRIKIT 185

Query: 178 IQENATCKHFQIR 190
           IQEN T KHFQIR
Sbjct: 186 IQENTTYKHFQIR 198

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399065|gb|ADL36827.1| SPL domain class transcription factor [Malus x domestica]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/176 (56%), Positives = 129/176 (73%), Gaps = 3/176 (1%)

Query: 16  EEATAAFVDSDDDDDDGGEYDLCPQEEGDDNRNSSSKKNKGSSGGSGLRSCQVDKCGADL 75
           E+   A V   ++++  GE  +  +++G   R+ SS  + G  GG  +R CQ D+C ADL
Sbjct: 15  EKPRVAVVVKKEEEEFNGELQVDRKKKGGLKRSLSSSSSSGGGGGGAMRRCQADRCTADL 74

Query: 76  SDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNE 135
           S+ KQYHR+HKVC++H+K+QVVL+ G+ QRFCQQCSRFH+L EFD+TKRSCRR LAGHNE
Sbjct: 75  SEEKQYHRKHKVCDLHSKSQVVLVSGLHQRFCQQCSRFHQLPEFDDTKRSCRRHLAGHNE 134

Query: 136 RRRKNAAESNG-EGSSCKGTGTGTQLKDLVCGKLDDKGRIKISIQENATCKHFQIR 190
           RRRKN AES+  EGSSC   G GTQ KD VCG++DD GRI+I+I  N+  KHF IR
Sbjct: 135 RRRKNPAESHAVEGSSC-NVGAGTQFKD-VCGQVDDSGRIRITIPGNSIHKHFHIR 188

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|63115357|gb|AAY33857.1| putative squamosa promoter-binding protein [Betula platyphylla]

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/109 (81%), Positives = 100/109 (91%), Gaps = 1/109 (0%)

Query: 82  HRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKNA 141
           H+RHKVCE H KAQVVL+GG+RQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKN 
Sbjct: 1   HKRHKVCEHHPKAQVVLVGGMRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKNT 60

Query: 142 AESNGEGSSCKGTGTGTQLKDLVCGKLDDKGRIKISIQENATCKHFQIR 190
           AES+ EGSS KGTGT  QLKD+VCG++DD+GRI+I+I EN+T KHFQIR
Sbjct: 61  AESHAEGSSRKGTGT-HQLKDIVCGQVDDRGRIQITIHENSTYKHFQIR 108

Source: Betula platyphylla

Species: Betula platyphylla

Genus: Betula

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117134|ref|XP_002317486.1| predicted protein [Populus trichocarpa] gi|222860551|gb|EEE98098.1| predicted protein [Populus trichocarpa]

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/128 (70%), Positives = 107/128 (83%), Gaps = 4/128 (3%)

Query: 65  SCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKR 124
           SCQV+KCGA+L+DAK+YHRRHKVCEVHAK+  V++ G+RQRFCQQCSRFHEL EFDETKR
Sbjct: 36  SCQVEKCGANLTDAKRYHRRHKVCEVHAKSPAVVVAGLRQRFCQQCSRFHELLEFDETKR 95

Query: 125 SCRRRLAGHNERRRKNAAESNGEGSSCKGTGTGTQLKDLVCGKLDDKGRIKISI--QENA 182
           SCRRRLAGHNERRRKN AES GEGSS K  G GTQLK+  C + D++GR ++SI  Q ++
Sbjct: 96  SCRRRLAGHNERRRKNTAESYGEGSSRK--GVGTQLKESPCRQADERGRYQMSIPSQGSS 153

Query: 183 TCKHFQIR 190
           + K  QIR
Sbjct: 154 SYKRSQIR 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549906|ref|XP_003543331.1| PREDICTED: LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 4-like [Glycine max]

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 87/129 (67%), Positives = 103/129 (79%), Gaps = 6/129 (4%)

Query: 63  LRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDET 122
           +R CQ     ADL +AKQYHRRH+VCE H KAQVVL+  +RQRFCQQCSRFHEL+EFD+T
Sbjct: 1   MRCCQ----XADLHEAKQYHRRHRVCEYHVKAQVVLVDEVRQRFCQQCSRFHELAEFDDT 56

Query: 123 KRSCRRRLAGHNERRRKNAAESNGEGSSCKGTGTG-TQLKDLVCGKLDDKGRIKISIQEN 181
           KRSCR  LAGHNERRRKN+ +S  EGSS +  GTG  QLKD+ CG+ D++GRI+I+I EN
Sbjct: 57  KRSCRSSLAGHNERRRKNSDQSQAEGSS-RNKGTGHPQLKDITCGQADERGRIQITIHEN 115

Query: 182 ATCKHFQIR 190
           A  KHFQIR
Sbjct: 116 AAYKHFQIR 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456643|ref|XP_004146058.1| PREDICTED: squamosa promoter-binding-like protein 4-like [Cucumis sativus] gi|449517046|ref|XP_004165557.1| PREDICTED: squamosa promoter-binding-like protein 4-like [Cucumis sativus]

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 85/139 (61%), Positives = 105/139 (75%), Gaps = 3/139 (2%)

Query: 55  KGSSGGS-GLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRF 113
           +G SGGS  L SCQ   C ADLS+AK+YHRRHKVCE H+KA +V++ GIRQRFCQQCSRF
Sbjct: 64  RGKSGGSVSLPSCQAHNCAADLSEAKRYHRRHKVCEFHSKAAIVMVAGIRQRFCQQCSRF 123

Query: 114 HELSEFDETKRSCRRRLAGHNERRRKNAAESNGEGSSCKGTGTGTQLKDLVCGKL--DDK 171
           HEL+EFDE KRSCRRRLAGHNERRRK++AES GE +S KG+    Q K+  C +L  D +
Sbjct: 124 HELTEFDEAKRSCRRRLAGHNERRRKSSAESQGESTSRKGSAPQAQSKESHCRQLVEDQR 183

Query: 172 GRIKISIQENATCKHFQIR 190
            RI+++   ++  KH  IR
Sbjct: 184 SRIQMAPPGSSGYKHLHIR 202

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584731|ref|XP_002533086.1| Squamosa promoter-binding protein, putative [Ricinus communis] gi|223527125|gb|EEF29301.1| Squamosa promoter-binding protein, putative [Ricinus communis]

 Score =  169 bits (427), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 84/127 (66%), Positives = 104/127 (81%), Gaps = 3/127 (2%)

Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRS 125
           CQV++CGADL+DAK+YHRRHKVCE+HAKA  V++ G+RQRFCQQCSRFHEL EFDE KRS
Sbjct: 73  CQVERCGADLTDAKRYHRRHKVCEIHAKAPAVVVAGLRQRFCQQCSRFHELVEFDEAKRS 132

Query: 126 CRRRLAGHNERRRKNAAESNGEGSSCKGTGTGTQLKDLVCGKLDDKGRIKISIQE--NAT 183
           CRRRLAGHNERRRK++AES GEGSS KG  +G QLK+  C  +D++G+ +I+I    ++ 
Sbjct: 133 CRRRLAGHNERRRKSSAESYGEGSSRKGPFSG-QLKESHCRHVDERGKYQITIPTAGSSA 191

Query: 184 CKHFQIR 190
            K  QIR
Sbjct: 192 YKRSQIR 198

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461502|ref|XP_002282598.1| PREDICTED: squamosa promoter-binding-like protein 4 [Vitis vinifera] gi|302142976|emb|CBI20271.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (409), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 82/128 (64%), Positives = 101/128 (78%), Gaps = 10/128 (7%)

Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRS 125
           CQ +KCGADL+DAK+YHRRHKVCEVHAKA +V + G+RQRFCQQCSRFHELSEFDE KRS
Sbjct: 84  CQAEKCGADLTDAKRYHRRHKVCEVHAKAAMVEVAGLRQRFCQQCSRFHELSEFDEAKRS 143

Query: 126 CRRRLAGHNERRRKNAAES-NGEGSSCKGTGTGTQLKDLVCGKLDDK--GRIKISIQENA 182
           CRRRLAGHNERRRK A+ES N EGS       G + K+  C + +++  GR++I++   +
Sbjct: 144 CRRRLAGHNERRRKGASESQNAEGS-------GGKEKENQCRQAEERAAGRVEINLPGTS 196

Query: 183 TCKHFQIR 190
           + KHFQIR
Sbjct: 197 SYKHFQIR 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2009675	174	SPL4 "squamosa promoter bindin	0.642	0.701	0.561	1.7e-34
TAIR|locus:2087105	181	SPL5 "squamosa promoter bindin	0.473	0.497	0.711	6.7e-33
TAIR|locus:2026428	405	AT1G69170 [Arabidopsis thalian	0.4	0.187	0.710	1.3e-30
TAIR|locus:2101402	927	SPL12 "squamosa promoter-bindi	0.5	0.102	0.663	2.2e-30
TAIR|locus:2057656	131	SPL3 "squamosa promoter bindin	0.410	0.595	0.730	4.4e-29
TAIR|locus:2041329	881	SPL1 "squamosa promoter bindin	0.442	0.095	0.690	2e-27
TAIR|locus:504956101	333	SPL8 "squamosa promoter bindin	0.463	0.264	0.630	3.5e-27
TAIR|locus:2037355	1035	SPL14 "squamosa promoter bindi	0.389	0.071	0.783	1.9e-26
TAIR|locus:2011706	988	AT1G76580 [Arabidopsis thalian	0.415	0.079	0.721	9.9e-26
TAIR|locus:2059974	375	SPL9 "squamosa promoter bindin	0.389	0.197	0.702	1.4e-25

TAIR|locus:2009675 SPL4 "squamosa promoter binding protein-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 73/130 (56%), Positives = 94/130 (72%)

Query:    63 LRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDET 122
             LR CQVD+C AD+ +AK YHRRHKVCEVHAKA  V + G+ QRFCQQCSRFH+L EFDE 
Sbjct:    51 LRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEA 110

Query:   123 KRSCRRRLAGHNERRRKNAAESN-GEGSSCKGTGTGTQLKDLVCGKLDDKGRIKISI-QE 180
             KRSCRRRLAGHNERRRK++ ES  GEGS  +G      +++       ++ R+++++   
Sbjct:   111 KRSCRRRLAGHNERRRKSSGESTYGEGSGRRGINGQVVMQN------QERSRVEMTLPMP 164

Query:   181 NATCKHFQIR 190
             N++ K  QIR
Sbjct:   165 NSSFKRPQIR 174

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

TAIR|locus:2087105 SPL5 "squamosa promoter binding protein-like 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 64/90 (71%), Positives = 75/90 (83%)

Query:    64 RSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETK 123
             R CQVD+C  +L++AKQY+RRH+VCEVHAKA    + G+RQRFCQQCSRFHEL EFDE K
Sbjct:    61 RLCQVDRCTVNLTEAKQYYRRHRVCEVHAKASAATVAGVRQRFCQQCSRFHELPEFDEAK 120

Query:   124 RSCRRRLAGHNERRRKNAAESNGEGSSCKG 153
             RSCRRRLAGHNERRRK + +S GEGS  +G
Sbjct:   121 RSCRRRLAGHNERRRKISGDSFGEGSGRRG 150

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)]

 Score = 306 (112.8 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
 Identities = 54/76 (71%), Positives = 62/76 (81%)

Query:    66 CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRS 125
             CQV  C  DLS +K YH+RH+VCE H+K  VV++ G+ QRFCQQCSRFH LSEFD+ KRS
Sbjct:   124 CQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKRS 183

Query:   126 CRRRLAGHNERRRKNA 141
             CRRRLAGHNERRRK A
Sbjct:   184 CRRRLAGHNERRRKPA 199

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 2.2e-30, P = 2.2e-30
 Identities = 63/95 (66%), Positives = 71/95 (74%)

Query:    66 CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRS 125
             CQVD CGADLS  K YHRRHKVCE+H+KA   L+GGI QRFCQQCSRFH L EFDE KRS
Sbjct:   127 CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFDEGKRS 186

Query:   126 CRRRLAGHNERRRKNAAESNGEGSSCKGTGTGTQL 160
             CRRRLAGHN+RRRK   ++ G G+S     T   +
Sbjct:   187 CRRRLAGHNKRRRKANPDTIGNGTSMSDDQTSNYM 221

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2057656 SPL3 "squamosa promoter binding protein-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 57/78 (73%), Positives = 65/78 (83%)

Query:    66 CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRS 125
             CQV+ C AD+S AKQYH+RHKVC+ HAKA  V + G+ QRFCQQCSRFH LSEFDE KRS
Sbjct:    54 CQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSRFHALSEFDEAKRS 113

Query:   126 CRRRLAGHNERRRKNAAE 143
             CRRRLAGHNERRRK+  +
Sbjct:   114 CRRRLAGHNERRRKSTTD 131

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009908 "flower development" evidence=TAS

GO:0009911 "positive regulation of flower development" evidence=IMP

TAIR|locus:2041329 SPL1 "squamosa promoter binding protein-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 2.0e-27, P = 2.0e-27
 Identities = 58/84 (69%), Positives = 64/84 (76%)

Query:    66 CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRS 125
             CQV+ C ADLS  K YHRRHKVCE+H+KA    +GGI QRFCQQCSRFH L EFDE KRS
Sbjct:   106 CQVENCEADLSKVKDYHRRHKVCEMHSKATSATVGGILQRFCQQCSRFHLLQEFDEGKRS 165

Query:   126 CRRRLAGHNERRRKNAAESNGEGS 149
             CRRRLAGHN+RRRK   E    G+
Sbjct:   166 CRRRLAGHNKRRRKTNPEPGANGN 189

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

TAIR|locus:504956101 SPL8 "squamosa promoter binding protein-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 58/92 (63%), Positives = 66/92 (71%)

Query:    66 CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRS 125
             CQ + C ADLS AK YHRRHKVCE H+KA  V+  G+ QRFCQQCSRFH LSEFD  KRS
Sbjct:   188 CQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCSRFHLLSEFDNGKRS 247

Query:   126 CRRRLAGHNERRRKNAAESNGEGSSCKGTGTG 157
             CR+RLA HN RRRK     +   S+ + TGTG
Sbjct:   248 CRKRLADHNRRRRK----CHQSASATQDTGTG 275

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0009554 "megasporogenesis" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2037355 SPL14 "squamosa promoter binding protein-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 58/74 (78%), Positives = 60/74 (81%)

Query:    66 CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRS 125
             CQVD C  DLS AK YHRRHKVCEVH+KA   L+G   QRFCQQCSRFH LSEFDE KRS
Sbjct:   120 CQVDNCTEDLSHAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRS 179

Query:   126 CRRRLAGHNERRRK 139
             CRRRLAGHN RRRK
Sbjct:   180 CRRRLAGHNRRRRK 193

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2011706 AT1G76580 [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 9.9e-26, P = 9.9e-26
 Identities = 57/79 (72%), Positives = 61/79 (77%)

Query:    66 CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRS 125
             CQVD C  DLS AK YHRRHKVCEVH+KA   L+G   QRFCQQCSRFH LSEFDE KRS
Sbjct:    82 CQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRS 141

Query:   126 CRRRLAGHNERRRKNAAES 144
             CRRRL GHN RRRK   ++
Sbjct:   142 CRRRLDGHNRRRRKTQPDA 160

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2059974 SPL9 "squamosa promoter binding protein-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 52/74 (70%), Positives = 60/74 (81%)

Query:    66 CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRS 125
             CQV+ CG DL++AK Y+ RH+VC VH+K   V + GI QRFCQQCSRFH+L EFD  KRS
Sbjct:    74 CQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCSRFHQLPEFDLEKRS 133

Query:   126 CRRRLAGHNERRRK 139
             CRRRLAGHNERRRK
Sbjct:   134 CRRRLAGHNERRRK 147

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0048366 "leaf development" evidence=IMP;IDA

GO:2000025 "regulation of leaf formation" evidence=IMP

GO:0048653 "anther development" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S7A9	SPL4_ARATH	No assigned EC number	0.5302	0.7210	0.7873	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
pfam03110	79	pfam03110, SBP, SBP domain	3e-48

>gnl|CDD|190527 pfam03110, SBP, SBP domain

 Score =  151 bits (383), Expect = 3e-48
 Identities = 62/78 (79%), Positives = 68/78 (87%)

Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRS 125
           CQV+ CGADLS+AK YHRRHKVCEVH+KA VVL+ G+ QRFCQQCSRFH LSEFDE KRS
Sbjct: 2   CQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKRS 61

Query: 126 CRRRLAGHNERRRKNAAE 143
           CRRRLAGHNERRRK   +
Sbjct: 62  CRRRLAGHNERRRKPQPD 79

SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
PF03110	79	SBP: SBP domain; InterPro: IPR004333 The SBP plant	100.0

>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []

Probab=100.00  E-value=3.2e-42  Score=254.92  Aligned_cols=78  Identities=71%  Similarity=1.197  Sum_probs=63.2

Q ss_pred             ccccCCCCcccccchhhhhhccchhhhhcccEEEECCeeeehhhhhcccccccccccccchHHHHHhhHHHHhccccc
Q 029650           65 SCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKNAA  142 (190)
Q Consensus        65 ~CQVeGC~adLs~~K~YhrRhrVCe~H~KAp~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rLarHn~RRRk~~~  142 (190)
                      +||||||++||+++|.||+||+|||.|++||+|+++|.++||||||++||+|+||||+|||||++|++||+|||++++
T Consensus         1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~   78 (79)
T PF03110_consen    1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ   78 (79)
T ss_dssp             C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred             CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence            599999999999999999999999999999999999999999999999999999999999999999999999999875

Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
1ul4_A	94	Solution Structure Of The Dna-Binding Domain Of Squ		3e-30
1wj0_A	60	Solution Structure Of The Dna-Binding Domain Of Squ		8e-20
1ul5_A	88	Solution Structure Of The Dna-binding Domain Of Squ		3e-18

>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 66/77 (85%)
Query: 63  LRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDET 122
           LR CQVD+C AD+ +AK YHRRHKVCEVHAKA  V + G+ QRFCQQCSRFH+L EFDE 
Sbjct: 8   LRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEA 67
Query: 123 KRSCRRRLAGHNERRRK 139
           KRSCRRRLAGHNERRRK
Sbjct: 68  KRSCRRRLAGHNERRRK 84

>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60

Iteration: 1
 Score = 93.2 bits (230), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 42/55 (76%), Positives = 45/55 (81%)
Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFD 120
           CQVD CGADLS  K YHRRHKVCE+H+KA   L+GGI QRFCQQCSRFH L EFD
Sbjct: 6   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88

Iteration: 1
 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 55/81 (67%)
Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRS 125
           CQV  C AD+S+ K YH+RH+VC   A A  V++ G  +R+CQQC +FH L +FDE KRS
Sbjct: 6   CQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRS 65
Query: 126 CRRRLAGHNERRRKNAAESNG 146
           CRR+L  HN RR++   +  G
Sbjct: 66  CRRKLERHNNRRKRKPVDKGG 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	7e-37
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	4e-33
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	2e-30
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94

 Score =  122 bits (307), Expect = 7e-37
 Identities = 68/93 (73%), Positives = 76/93 (81%)

Query: 56  GSSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHE 115
           GSSG SGLR CQVD+C AD+ +AK YHRRHKVCEVHAKA  V + G+ QRFCQQCSRFH+
Sbjct: 1   GSSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHD 60

Query: 116 LSEFDETKRSCRRRLAGHNERRRKNAAESNGEG 148
           L EFDE KRSCRRRLAGHNERRRK++ ES    
Sbjct: 61  LQEFDEAKRSCRRRLAGHNERRRKSSGESGPSS 93

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88

 Score =  112 bits (282), Expect = 4e-33
 Identities = 41/87 (47%), Positives = 56/87 (64%)

Query: 62  GLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDE 121
            +  CQV  C AD+S+ K YH+RH+VC   A A  V++ G  +R+CQQC +FH L +FDE
Sbjct: 2   SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDE 61

Query: 122 TKRSCRRRLAGHNERRRKNAAESNGEG 148
            KRSCRR+L  HN RR++   +  G  
Sbjct: 62  GKRSCRRKLERHNNRRKRKPVDKGGVA 88

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 60

 Score =  105 bits (263), Expect = 2e-30
 Identities = 42/59 (71%), Positives = 45/59 (76%)

Query: 62  GLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFD 120
               CQVD CGADLS  K YHRRHKVCE+H+KA   L+GGI QRFCQQCSRFH L EFD
Sbjct: 2   SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 25/225 (11%), Positives = 59/225 (26%), Gaps = 81/225 (36%)

Query: 14  KKEEATAAFVDSDDDDDDGGEYDLCPQEEGDDNRNSSSKKNKGSSGGSGLRSCQVDKCGA 73
           K+EE    FV+     +    Y            +    + +  S  + +   Q D+   
Sbjct: 74  KQEEMVQKFVEEVLRIN----YKFL--------MSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 74  DLSDAKQYH--RRHKVCEVHAKAQ-------VVL--MGG---------------IRQRFC 107
           D     +Y+  R     ++            V++  + G               ++ +  
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 108 --------QQCSRFHELSE------FDETKRSCRRRLAGHNERRRKNAAESNGEGSSCKG 153
                   + C+    + E      +        R     N + R ++ ++         
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--------- 232

Query: 154 TGTGTQLKDLVCGK--------LDDKGRIKISIQENATCKHFQIR 190
                +L+ L+  K        L +       +Q       F + 
Sbjct: 233 -----ELRRLLKSKPYENCLLVLLN-------VQNAKAWNAFNLS 265

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	190
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	100.0
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	100.0
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	100.0

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=1.8e-46  Score=284.64  Aligned_cols=92  Identities=74%  Similarity=1.256  Sum_probs=80.6

Q ss_pred             cCCCCCCCcccccCCCCcccccchhhhhhccchhhhhcccEEEECCeeeehhhhhcccccccccccccchHHHHHhhHHH
Q 029650           56 GSSGGSGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNE  135 (190)
Q Consensus        56 ~~~~~~g~~~CQVeGC~adLs~~K~YhrRhrVCe~H~KAp~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rLarHn~  135 (190)
                      |++|+++.++||||||++||+.+|.||+||+|||.|++||+|+|+|+++||||||++||+|+|||++|||||++|++||+
T Consensus         1 ~~~~~~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~   80 (94)
T 1ul4_A            1 GSSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNE   80 (94)
T ss_dssp             -------CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCC
T ss_pred             CCCCCCCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhccccccccCC
Q 029650          136 RRRKNAAESNGE  147 (190)
Q Consensus       136 RRRk~~~~~~~~  147 (190)
                      ||||+++++...
T Consensus        81 RRRk~~~~~~~~   92 (94)
T 1ul4_A           81 RRRKSSGESGPS   92 (94)
T ss_dssp             CCCSCCCC----
T ss_pred             HhccCCCCcCCC
Confidence            999999997654

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=4.6e-45  Score=274.13  Aligned_cols=84  Identities=48%  Similarity=0.961  Sum_probs=80.2

Q ss_pred             CCCcccccCCCCcccccchhhhhhccchhhhhcccEEEECCeeeehhhhhcccccccccccccchHHHHHhhHHHHhccc
Q 029650           61 SGLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKN  140 (190)
Q Consensus        61 ~g~~~CQVeGC~adLs~~K~YhrRhrVCe~H~KAp~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rLarHn~RRRk~  140 (190)
                      +|.++||||||++||+.+|.||+||+|||.|++||+|+|+|+++||||||++||+|+|||++|||||++|++||+|||++
T Consensus         1 G~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~   80 (88)
T 1ul5_A            1 GSVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRK   80 (88)
T ss_dssp             --CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCC
T ss_pred             CCCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccc
Q 029650          141 AAES  144 (190)
Q Consensus       141 ~~~~  144 (190)
                      ++++
T Consensus        81 ~~~~   84 (88)
T 1ul5_A           81 PVDK   84 (88)
T ss_dssp             SCSS
T ss_pred             CccC
Confidence            8875

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=1.4e-34  Score=204.18  Aligned_cols=59  Identities=71%  Similarity=1.265  Sum_probs=57.3

Q ss_pred             CCcccccCCCCcccccchhhhhhccchhhhhcccEEEECCeeeehhhhhcccccccccc
Q 029650           62 GLRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFD  120 (190)
Q Consensus        62 g~~~CQVeGC~adLs~~K~YhrRhrVCe~H~KAp~V~v~G~~qRFCQQCsRFH~L~EFD  120 (190)
                      +.++|||+||++||+.+|.||+||||||.|+|||+|+++|+++||||||+|||+|+|||
T Consensus         2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD   60 (60)
T 1wj0_A            2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   60 (60)
T ss_dssp             -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence            57899999999999999999999999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d1ul4a_	81	g.72.1.1 (A:) Squamosa promoter binding protein-li	9e-41
d1ul5a_	86	g.72.1.1 (A:) Squamosa promoter binding protein-li	7e-40
d1wj0a_	58	g.72.1.1 (A:) Squamosa-promoter binding-like prote	8e-30

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  130 bits (329), Expect = 9e-41
 Identities = 61/81 (75%), Positives = 69/81 (85%)

Query: 63  LRSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDET 122
           LR CQVD+C AD+ +AK YHRRHKVCEVHAKA  V + G+ QRFCQQCSRFH+L EFDE 
Sbjct: 1   LRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEA 60

Query: 123 KRSCRRRLAGHNERRRKNAAE 143
           KRSCRRRLAGHNERRRK++ E
Sbjct: 61  KRSCRRRLAGHNERRRKSSGE 81

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  128 bits (324), Expect = 7e-40
 Identities = 41/81 (50%), Positives = 55/81 (67%)

Query: 66  CQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRS 125
           CQV  C AD+S+ K YH+RH+VC   A A  V++ G  +R+CQQC +FH L +FDE KRS
Sbjct: 4   CQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRS 63

Query: 126 CRRRLAGHNERRRKNAAESNG 146
           CRR+L  HN RR++   +  G
Sbjct: 64  CRRKLERHNNRRKRKPVDKGG 84

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  102 bits (255), Expect = 8e-30
 Identities = 42/56 (75%), Positives = 45/56 (80%)

Query: 65  SCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFD 120
            CQVD CGADLS  K YHRRHKVCE+H+KA   L+GGI QRFCQQCSRFH L EFD
Sbjct: 3   CCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d1ul4a_	81	Squamosa promoter binding protein-like 4, DNA-bind	100.0
d1ul5a_	86	Squamosa promoter binding protein-like 7, DNA-bind	100.0
d1wj0a_	58	Squamosa-promoter binding-like protein 12, DNA-bin	99.98

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.3e-44  Score=264.63  Aligned_cols=80  Identities=75%  Similarity=1.311  Sum_probs=78.4

Q ss_pred             cccccCCCCcccccchhhhhhccchhhhhcccEEEECCeeeehhhhhcccccccccccccchHHHHHhhHHHHhcccccc
Q 029650           64 RSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKNAAE  143 (190)
Q Consensus        64 ~~CQVeGC~adLs~~K~YhrRhrVCe~H~KAp~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rLarHn~RRRk~~~~  143 (190)
                      ..||||||++||+.+|.||+||+|||.|++||+|+|+|+++||||||++||+|+|||++|||||++|++||+||||+++|
T Consensus         2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (81)
T d1ul4a_           2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE   81 (81)
T ss_dssp             CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred             CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999875

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=3.2e-44  Score=267.15  Aligned_cols=83  Identities=49%  Similarity=0.990  Sum_probs=81.0

Q ss_pred             cccccCCCCcccccchhhhhhccchhhhhcccEEEECCeeeehhhhhcccccccccccccchHHHHHhhHHHHhcccccc
Q 029650           64 RSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKNAAE  143 (190)
Q Consensus        64 ~~CQVeGC~adLs~~K~YhrRhrVCe~H~KAp~V~v~G~~qRFCQQCsRFH~L~EFDg~KRSCR~rLarHn~RRRk~~~~  143 (190)
                      +.||||||++||+.+|.||+||+|||.|++||+|+|+|+++||||||++||+|+|||++|||||++|++||+||||++++
T Consensus         2 ~rCqV~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (86)
T d1ul5a_           2 ARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPVD   81 (86)
T ss_dssp             CSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSCS
T ss_pred             CeeeeCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhccccChhhhccccccHHHHHHHHHHHhccCCcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q 029650          144 SNG  146 (190)
Q Consensus       144 ~~~  146 (190)
                      +++
T Consensus        82 ~~g   84 (86)
T d1ul5a_          82 KGG   84 (86)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            764

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.98  E-value=2.7e-34  Score=200.39  Aligned_cols=57  Identities=74%  Similarity=1.314  Sum_probs=55.9

Q ss_pred             cccccCCCCcccccchhhhhhccchhhhhcccEEEECCeeeehhhhhcccccccccc
Q 029650           64 RSCQVDKCGADLSDAKQYHRRHKVCEVHAKAQVVLMGGIRQRFCQQCSRFHELSEFD  120 (190)
Q Consensus        64 ~~CQVeGC~adLs~~K~YhrRhrVCe~H~KAp~V~v~G~~qRFCQQCsRFH~L~EFD  120 (190)
                      .+||||||++||+.+|.||+||||||.|+|||+|+|+|++|||||||+|||+|+|||
T Consensus         2 ~~CqV~gC~~dl~~~k~YhrRhkvCe~H~ka~~V~v~G~~~RFCQQCsrFH~L~eFD   58 (58)
T d1wj0a_           2 ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   58 (58)
T ss_dssp             EECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             ceeEeCCcchhhhhhHHhcchhhHHHHhcCCCeEEECCcccccccccCCcccccccC
Confidence            479999999999999999999999999999999999999999999999999999998