Citrus Sinensis ID: 029656

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Protein Sequence
MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGELGG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHcccccEEEEccccccccccccEEEEcccccccccHHcccHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHcccEEEEEccccHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHcccccEEEEEccccccEEEEEHEEEEcccccccccccccccEEEHHHHHHHHHHHHHHHHcccEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maqeisngnhnsaskppptpsplrfskFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDnyftgskdnlrkwighprfelirhdvtepllieVDQIyhlacpaspifykynpvktiKTNVIGTLNMLGLAKRVGARILLTstsevygdplvhpqdesywgnvnpigMFSFVLKDGIMKLIGELGG
Flexible Loop (DISEMBL)
maqeisngnhnsaskppptpSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDnyftgskdnlrkWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGELGG
Low Complexity Region (SEG)
MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGELGG
Disordered region (IsUnstruct)
************************FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIG****
Disordered Region (DISOPRED)
*****************************QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGELGG
Disordered Region (DISEMBL)
*******************PSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGELGG
Disordered Region (DISPRO)
*******************PSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGELGG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGELGG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	190	2.2.26 [Sep-21-2011]
Q6DF08	421	UDP-glucuronic acid decar	yes	no	0.857	0.387	0.647	3e-57
Q6GMI9	418	UDP-glucuronic acid decar	yes	no	0.721	0.327	0.760	7e-57
Q8NBZ7	420	UDP-glucuronic acid decar	yes	no	0.721	0.326	0.760	1e-56
Q5R885	420	UDP-glucuronic acid decar	yes	no	0.721	0.326	0.760	1e-56
Q91XL3	420	UDP-glucuronic acid decar	yes	no	0.721	0.326	0.760	1e-56
Q5PQX0	420	UDP-glucuronic acid decar	yes	no	0.721	0.326	0.760	1e-56
Q57664	305	Putative UDP-glucose 4-ep	yes	no	0.731	0.455	0.360	2e-15
Q6D2F1	673	Bifunctional polymyxin re	yes	no	0.647	0.182	0.308	5e-12
C6DAW5	672	Bifunctional polymyxin re	yes	no	0.647	0.183	0.308	5e-12
A0R5C5	313	UDP-glucose 4-epimerase O	no	no	0.731	0.444	0.333	7e-12

>sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1

 Score =  221 bits (562), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 112/173 (64%), Positives = 127/173 (73%), Gaps = 10/173 (5%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFF--QSNMRILVTGGAGFIGSHLVDKLMENEKN 58
           + ++I N   +   K PP        KF   +   RIL+TGGAGF+GSHL DKLM  + +
Sbjct: 63  LREKIQNLERSFTQKYPPV-------KFLSEKDRKRILITGGAGFVGSHLTDKLM-MDGH 114

Query: 59  EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 118
           EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+
Sbjct: 115 EVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPI 174

Query: 119 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
           KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct: 175 KTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEEYWGHVNPIG 227

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis.
Xenopus tropicalis (taxid: 8364)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5

>sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2

 Score =  219 bits (559), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 116/138 (84%), Gaps = 1/138 (0%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 88  RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 146

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 147 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 206

Query: 154 PLVHPQDESYWGNVNPIG 171
           P VHPQ+E YWG+VNPIG
Sbjct: 207 PEVHPQNEDYWGHVNPIG 224

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis (By similarity). Essential during embryogenesis for craniofacial development.

Danio rerio (taxid: 7955)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1

 Score =  219 bits (557), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 115/138 (83%), Gaps = 1/138 (0%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 90  RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208

Query: 154 PLVHPQDESYWGNVNPIG 171
           P VHPQ E YWG+VNPIG
Sbjct: 209 PEVHPQSEDYWGHVNPIG 226

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1

 Score =  219 bits (557), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 115/138 (83%), Gaps = 1/138 (0%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 90  RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208

Query: 154 PLVHPQDESYWGNVNPIG 171
           P VHPQ E YWG+VNPIG
Sbjct: 209 PEVHPQSEDYWGHVNPIG 226

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis.

Pongo abelii (taxid: 9601)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1

 Score =  219 bits (557), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 115/138 (83%), Gaps = 1/138 (0%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 90  RILITGGAGFVGSHLTDKLM-MDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208

Query: 154 PLVHPQDESYWGNVNPIG 171
           P VHPQ E YWG+VNPIG
Sbjct: 209 PEVHPQSEDYWGHVNPIG 226

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1

 Score =  218 bits (556), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 115/138 (83%), Gaps = 1/138 (0%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 90  RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 148

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 149 LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 208

Query: 154 PLVHPQDESYWGNVNPIG 171
           P VHPQ E YWG+VNPIG
Sbjct: 209 PEVHPQSEDYWGHVNPIG 226

Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 5

>sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0211 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 91/161 (56%), Gaps = 22/161 (13%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           ILVTGGAGFIGSH+VDKL+EN   +VI++DN  TG+K+N+     +P+ E +  D+ +  
Sbjct: 2   ILVTGGAGFIGSHIVDKLIENNY-DVIILDNLTTGNKNNI-----NPKAEFVNADIRDKD 55

Query: 95  LIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILLTS 146
           L E      V+ + H A   +      NPV     NV+GT+N+L + ++  +   +  +S
Sbjct: 56  LDEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASS 115

Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGE 187
              VYG+P   P DE++   +NP+  +      G+ K +GE
Sbjct: 116 GGAVYGEPNYLPVDENH--PINPLSPY------GLSKYVGE 148

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

>sp|Q6D2F1|ARNA_ERWCT Bifunctional polymyxin resistance protein ArnA OS=Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) GN=arnA PE=3 SV=1

 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 10/133 (7%)

Query: 26  SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
           S+  +   R+L+ G  GFIG+HL ++L+ +++ E+  +D     S D + +++G PRF  
Sbjct: 316 SRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHF 371

Query: 86  IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
           +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    R  
Sbjct: 372 VEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYN 431

Query: 140 ARILLTSTSEVYG 152
            RI+  STSEVYG
Sbjct: 432 KRIVFPSTSEVYG 444

Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides.

Erwinia carotovora subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672) (taxid: 218491)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: 5

>sp|C6DAW5|ARNA_PECCP Bifunctional polymyxin resistance protein ArnA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=arnA PE=3 SV=1

 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 10/133 (7%)

Query: 26  SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
           S+  +   R+L+ G  GFIG+HL ++L+ +++ E+  +D     S D + +++G PRF  
Sbjct: 315 SRVQRRRTRVLILGVNGFIGNHLTERLLRDDRYEIYGLDI----SSDAIARFLGDPRFHF 370

Query: 86  IRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
           +  D++      E  + + D I  L   A+PI Y  NP++  + +    L ++    R  
Sbjct: 371 VEGDISIHNEWIEYHIKKCDVILPLVAIATPIEYTRNPLRVFELDFEENLKIVRDCVRYN 430

Query: 140 ARILLTSTSEVYG 152
            RI+  STSEVYG
Sbjct: 431 KRIVFPSTSEVYG 443

Bifunctional enzyme that catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose (UDP-Ara4O) and the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose (UDP-L-Ara4FN). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides.

Pectobacterium carotovorum subsp. carotovorum (strain PC1) (taxid: 561230)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 0

EC: 5

>sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2

 Score = 70.5 bits (171), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 78/150 (52%), Gaps = 11/150 (7%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MR LVTG AGFIGS LVD+L+ +  + V+ +D+  +G  +NL       +FE ++ D+ +
Sbjct: 1   MRTLVTGAAGFIGSTLVDRLLAD-GHGVVGLDDLSSGRAENLHSAENSDKFEFVKADIVD 59

Query: 93  P----LLIEV--DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
                LL E   + I+HLA   S      +P      NV+GT+ +   A+  G R ++ +
Sbjct: 60  ADLTGLLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAARLAGVRKVVHT 119

Query: 147 TS--EVYGDPLVHPQDESYWGNVNPIGMFS 174
           +S   VYG P  +P  E     VNP   ++
Sbjct: 120 SSGGSVYGTPPAYPTSEDM--PVNPASPYA 147

Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) (taxid: 246196)

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
255575062	346	dtdp-glucose 4-6-dehydratase, putative [	0.915	0.502	0.954	3e-94
224100953	346	predicted protein [Populus trichocarpa]	0.915	0.502	0.936	4e-93
225449563	345	PREDICTED: UDP-glucuronic acid decarboxy	0.915	0.504	0.936	1e-92
224109544	346	predicted protein [Populus trichocarpa]	0.915	0.502	0.913	1e-91
192338748	346	UDP-D-glucuronate carboxy-lyase [Eucalyp	0.915	0.502	0.902	1e-89
356550259	348	PREDICTED: UDP-glucuronic acid decarboxy	0.915	0.5	0.903	7e-88
358248590	348	uncharacterized protein LOC100790835 [Gl	0.915	0.5	0.903	7e-88
449459910	344	PREDICTED: UDP-glucuronic acid decarboxy	0.915	0.505	0.885	2e-87
388495536	346	unknown [Lotus japonicus]	0.915	0.502	0.885	2e-87
60932273	343	UDP-glucuronic acid decarboxylase 3 [Pop	0.889	0.492	0.917	9e-87

>gi|255575062|ref|XP_002528436.1| dtdp-glucose 4-6-dehydratase, putative [Ricinus communis] gi|223532112|gb|EEF33919.1| dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]

 Score =  349 bits (895), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 166/174 (95%), Positives = 173/174 (99%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA+E+SNG+H+SASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV
Sbjct: 1   MAKEVSNGDHSSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IVVDNYFTGSKDNL+KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVVDNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ+ESYWGNVNPIG+ S
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQEESYWGNVNPIGVRS 174

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100953|ref|XP_002312082.1| predicted protein [Populus trichocarpa] gi|118487220|gb|ABK95438.1| unknown [Populus trichocarpa] gi|222851902|gb|EEE89449.1| predicted protein [Populus trichocarpa]

 Score =  345 bits (886), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 163/174 (93%), Positives = 170/174 (97%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA+E SNGNHNSA+K PPTPSPLRFSK+FQSNMRILVTGGAGFIGSHLVD+LMENEKNEV
Sbjct: 1   MAKEASNGNHNSATKAPPTPSPLRFSKYFQSNMRILVTGGAGFIGSHLVDRLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG+ S
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449563|ref|XP_002283871.1| PREDICTED: UDP-glucuronic acid decarboxylase 1 [Vitis vinifera] gi|147766093|emb|CAN65700.1| hypothetical protein VITISV_010481 [Vitis vinifera] gi|296086255|emb|CBI31696.3| unnamed protein product [Vitis vinifera]

 Score =  344 bits (882), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 163/174 (93%), Positives = 170/174 (97%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA+E+SNG+HNS +KPPPTPSPLR SKFFQSNMRILVTGGAGFIGSHLVDKLM+NEKNEV
Sbjct: 1   MAKEVSNGDHNSVTKPPPTPSPLRNSKFFQSNMRILVTGGAGFIGSHLVDKLMQNEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ+ESYWGNVNPIG+ S
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQEESYWGNVNPIGVRS 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109544|ref|XP_002315231.1| predicted protein [Populus trichocarpa] gi|118483816|gb|ABK93800.1| unknown [Populus trichocarpa] gi|118485318|gb|ABK94518.1| unknown [Populus trichocarpa] gi|222864271|gb|EEF01402.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (873), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 159/174 (91%), Positives = 170/174 (97%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           M++E SNG+HNSA+K PPTPSPLRFSKFFQSNMRIL+TGGAGFIGSHLVD+LMENEKNEV
Sbjct: 1   MSKEASNGDHNSAAKAPPTPSPLRFSKFFQSNMRILITGGAGFIGSHLVDRLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQ+ESYWGNVNPIG+ S
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQNESYWGNVNPIGVRS 174

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192338748|gb|ACF04279.1| UDP-D-glucuronate carboxy-lyase [Eucalyptus grandis]

 Score =  333 bits (855), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 157/174 (90%), Positives = 168/174 (96%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA++ SNG ++S +KPPPTPSPLRFSKFFQ NMRILVTGGAGFIGSHLVDKLMENEKNEV
Sbjct: 1   MAKQASNGENHSVAKPPPTPSPLRFSKFFQPNMRILVTGGAGFIGSHLVDKLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DN+FTG+K+NL+KWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNFFTGTKENLKKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG+ S
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS 174

Source: Eucalyptus grandis

Species: Eucalyptus grandis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550259|ref|XP_003543505.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Glycine max]

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 159/176 (90%), Positives = 165/176 (93%), Gaps = 2/176 (1%)

Query: 1   MAQEISNGN--HNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKN 58
           MA + SNGN  H + +K PP PSPLRFSKFFQSNMRILVTGGAGFIGSHLVD+LMENEKN
Sbjct: 1   MATDSSNGNGHHQTTTKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKN 60

Query: 59  EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 118
           EVIV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV
Sbjct: 61  EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 120

Query: 119 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ ESYWGNVNPIG+ S
Sbjct: 121 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRS 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248590|ref|NP_001239907.1| uncharacterized protein LOC100790835 [Glycine max] gi|255641885|gb|ACU21211.1| unknown [Glycine max]

 Score =  328 bits (841), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 159/176 (90%), Positives = 165/176 (93%), Gaps = 2/176 (1%)

Query: 1   MAQEISNGN--HNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKN 58
           MA + SNGN  H + +K PP PSPLRFSKFFQSNMRILVTGGAGFIGSHLVD+LMENEKN
Sbjct: 1   MATDSSNGNGHHQTTTKQPPLPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKN 60

Query: 59  EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 118
           EVIV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV
Sbjct: 61  EVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPV 120

Query: 119 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ ESYWGNVNPIG+ S
Sbjct: 121 KTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRS 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459910|ref|XP_004147689.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Cucumis sativus] gi|449523904|ref|XP_004168963.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Cucumis sativus]

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 154/174 (88%), Positives = 165/174 (94%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA++ SNG+  +++K PP PSPLR +KFFQ+NMRILVTGGAGFIGSHLVD+LMENEKNEV
Sbjct: 1   MAKQSSNGDFYTSTKAPPPPSPLRSAKFFQANMRILVTGGAGFIGSHLVDRLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
            KTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG+ S
Sbjct: 121 TKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRS 174

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495536|gb|AFK35834.1| unknown [Lotus japonicus]

 Score =  326 bits (836), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 154/174 (88%), Positives = 163/174 (93%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           MA + SNG+H  A K PP PSPLRFSKFFQ+NMRILVTGGAGFIGSHLVD+LMENEKNEV
Sbjct: 1   MATDSSNGDHQKAGKQPPLPSPLRFSKFFQANMRILVTGGAGFIGSHLVDRLMENEKNEV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
           IV DN+FTGSKDNL+KWIGHPRFELIRHDVTE LL+EVDQIYHLACPASPIFYKYNPVKT
Sbjct: 61  IVADNFFTGSKDNLKKWIGHPRFELIRHDVTEQLLVEVDQIYHLACPASPIFYKYNPVKT 120

Query: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQ ESYWGNVNPIG+ S
Sbjct: 121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPESYWGNVNPIGVRS 174

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60932273|gb|AAX37336.1| UDP-glucuronic acid decarboxylase 3 [Populus tomentosa]

 Score =  324 bits (831), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 155/169 (91%), Positives = 160/169 (94%)

Query: 6   SNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65
           SNG+H +  KPPP+PSPLR SKF QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIV DN
Sbjct: 3   SNGDHQTTVKPPPSPSPLRNSKFSQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVADN 62

Query: 66  YFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNV 125
           YFTGSKDNLRKWIG PRFELIRHDVTEPLL+EVDQIYHLACPASPIFYKYNPVKTIKTNV
Sbjct: 63  YFTGSKDNLRKWIGQPRFELIRHDVTEPLLVEVDQIYHLACPASPIFYKYNPVKTIKTNV 122

Query: 126 IGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           IGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ ESYWGNVNPIG+ S
Sbjct: 123 IGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRS 171

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	190
TAIR|locus:2053275	343	UXS6 "UDP-XYL synthase 6" [Ara	0.905	0.501	0.890	3.2e-81
TAIR|locus:2078206	341	UXS5 "UDP-XYL synthase 5" [Ara	0.894	0.498	0.876	9.7e-80
TAIR|locus:2168539	357	UXS3 "UDP-glucuronic acid deca	0.857	0.456	0.889	4.8e-78
TAIR|locus:2081675	445	AUD1 "AT3G62830" [Arabidopsis	0.757	0.323	0.731	8.6e-56
FB|FBgn0035848	441	CG7979 [Drosophila melanogaste	0.8	0.344	0.636	3.7e-54
UNIPROTKB|E1BV28	421	UXS1 "Uncharacterized protein"	0.778	0.351	0.713	4.3e-54
ZFIN|ZDB-GENE-020419-37	418	uxs1 "UDP-glucuronic acid deca	0.778	0.354	0.713	4.3e-54
UNIPROTKB|E1BMI4	420	UXS1 "Uncharacterized protein"	0.778	0.352	0.72	5.5e-54
UNIPROTKB|F1PU61	414	UXS1 "Uncharacterized protein"	0.778	0.357	0.713	5.5e-54
UNIPROTKB|B3KV61	363	UXS1 "UDP-glucuronate decarbox	0.778	0.407	0.713	5.5e-54

TAIR|locus:2053275 UXS6 "UDP-XYL synthase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 815 (292.0 bits), Expect = 3.2e-81, P = 3.2e-81
 Identities = 155/174 (89%), Positives = 161/174 (92%)

Query:     1 MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
             MA   SNG   + +KPPP PSPLR SKFFQSNMRILVTGGAGFIGSHLVDKLM+NEKNEV
Sbjct:     1 MASNSSNGT--TTTKPPPMPSPLRNSKFFQSNMRILVTGGAGFIGSHLVDKLMQNEKNEV 58

Query:    61 IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKT 120
             IV DNYFTGSKDNL+KWIGHPRFELIRHDVTEPL +EVDQIYHLACPASPIFYKYNPVKT
Sbjct:    59 IVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLFVEVDQIYHLACPASPIFYKYNPVKT 118

Query:   121 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
             IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQ ESYWGNVNPIG+ S
Sbjct:   119 IKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQTESYWGNVNPIGVRS 172

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2078206 UXS5 "UDP-XYL synthase 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 149/170 (87%), Positives = 161/170 (94%)

Query:     5 ISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD 64
             +++ +  ++ KPPP+PSPLR SKF QSNMRIL++GGAGFIGSHLVDKLMENEKNEVIV D
Sbjct:     1 MASSDKQTSPKPPPSPSPLRNSKFCQSNMRILISGGAGFIGSHLVDKLMENEKNEVIVAD 60

Query:    65 NYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN 124
             NYFTGSKDNL+KWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN
Sbjct:    61 NYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTN 120

Query:   125 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
             VIGTLNMLGLAKRVGARILLTSTSEVYGDPL+HPQ ESYWGNVNPIG+ S
Sbjct:   121 VIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQPESYWGNVNPIGVRS 170

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0042732 "D-xylose metabolic process" evidence=RCA;TAS

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2168539 UXS3 "UDP-glucuronic acid decarboxylase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 145/163 (88%), Positives = 156/163 (95%)

Query:    12 SASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK 71
             + +KPPP+PSPLR SKF Q NMRIL++GGAGFIGSHLVDKLMENEKNEV+V DNYFTGSK
Sbjct:    24 NTTKPPPSPSPLRNSKFCQPNMRILISGGAGFIGSHLVDKLMENEKNEVVVADNYFTGSK 83

Query:    72 DNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM 131
             +NL+KWIGHPRFELIRHDVTEPLLIEVD+IYHLACPASPIFYKYNPVKTIKTNVIGTLNM
Sbjct:    84 ENLKKWIGHPRFELIRHDVTEPLLIEVDRIYHLACPASPIFYKYNPVKTIKTNVIGTLNM 143

Query:   132 LGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
             LGLAKRVGARILLTSTSEVYGDPL+HPQ ESYWGNVNPIG+ S
Sbjct:   144 LGLAKRVGARILLTSTSEVYGDPLIHPQPESYWGNVNPIGVRS 186

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042732 "D-xylose metabolic process" evidence=RCA;IDA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IDA

TAIR|locus:2081675 AUD1 "AT3G62830" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 106/145 (73%), Positives = 125/145 (86%)

Query:    30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
             +  +R++VTGGAGF+GSHLVD+LM    + VIVVDN+FTG K+N+     +P FE+IRHD
Sbjct:   116 RKGLRVVVTGGAGFVGSHLVDRLMARG-DTVIVVDNFFTGRKENVMHHFSNPNFEMIRHD 174

Query:    90 VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149
             V EP+L+EVDQIYHLACPASP+ YK+NPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSE
Sbjct:   175 VVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 234

Query:   150 VYGDPLVHPQDESYWGNVNPIGMFS 174
             VYGDPL HPQ E+YWGNVNPIG+ S
Sbjct:   235 VYGDPLQHPQVETYWGNVNPIGVRS 259

GO:0003824 "catalytic activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM;IDA

GO:0009225 "nucleotide-sugar metabolic process" evidence=ISS

GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=ISS

GO:0019305 "dTDP-rhamnose biosynthetic process" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0042732 "D-xylose metabolic process" evidence=IDA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

FB|FBgn0035848 CG7979 [Drosophila melanogaster (taxid:7227)]

 Score = 540 (195.1 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
 Identities = 100/157 (63%), Positives = 124/157 (78%)

Query:    19 TPSPLRFSKF----FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL 74
             T +P ++ K     +++  RIL+TGGAGF+GSHLVD LM  + +EVIVVDN+FTG K N+
Sbjct:    98 TSTPRKYPKVKYLNYKNRKRILITGGAGFVGSHLVDDLMV-QGHEVIVVDNFFTGRKRNV 156

Query:    75 RKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
               W+GH  FELI HD+  PL IE+D+IYHLA PASP  Y YNPVKTIKTN +GT+N+LGL
Sbjct:   157 EHWLGHENFELIHHDIVNPLFIEIDEIYHLASPASPPHYMYNPVKTIKTNTMGTINVLGL 216

Query:   135 AKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
             AKRV A++L+ STSEVYGDP VHPQ E+YWG+VNPIG
Sbjct:   217 AKRVMAKVLIASTSEVYGDPTVHPQPETYWGHVNPIG 253

GO:0008460 "dTDP-glucose 4,6-dehydratase activity" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

UNIPROTKB|E1BV28 UXS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 107/150 (71%), Positives = 121/150 (80%)

Query:    22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
             P++F    +   RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH 
Sbjct:    80 PVKFLSE-KDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 137

Query:    82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
              FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct:   138 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 197

Query:   142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
             +LL STSEVYGDP VHPQ+E YWG+VNPIG
Sbjct:   198 LLLASTSEVYGDPEVHPQNEDYWGHVNPIG 227

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-020419-37 uxs1 "UDP-glucuronic acid decarboxylase 1" [Danio rerio (taxid:7955)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 107/150 (71%), Positives = 121/150 (80%)

Query:    22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
             P++F    +   RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH 
Sbjct:    77 PVKFLSE-KDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 134

Query:    82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
              FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct:   135 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 194

Query:   142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
             +LL STSEVYGDP VHPQ+E YWG+VNPIG
Sbjct:   195 LLLASTSEVYGDPEVHPQNEDYWGHVNPIG 224

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0051216 "cartilage development" evidence=IMP

GO:0001503 "ossification" evidence=IMP

GO:0030166 "proteoglycan biosynthetic process" evidence=IMP

GO:0030206 "chondroitin sulfate biosynthetic process" evidence=IMP

GO:0015012 "heparan sulfate proteoglycan biosynthetic process" evidence=IGI;IMP

GO:0030198 "extracellular matrix organization" evidence=IGI;IMP

GO:0050650 "chondroitin sulfate proteoglycan biosynthetic process" evidence=IGI;IMP

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

UNIPROTKB|E1BMI4 UXS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 108/150 (72%), Positives = 120/150 (80%)

Query:    22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
             P++F    +   RILVTGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH 
Sbjct:    79 PVKFLSE-KDRKRILVTGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 136

Query:    82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
              FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct:   137 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 196

Query:   142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
             +LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct:   197 LLLASTSEVYGDPEVHPQTEDYWGHVNPIG 226

GO:0050662 "coenzyme binding" evidence=IEA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1PU61 UXS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 107/150 (71%), Positives = 120/150 (80%)

Query:    22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
             P++F    +   RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH 
Sbjct:    73 PVKFLSE-KDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 130

Query:    82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
              FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct:   131 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 190

Query:   142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
             +LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct:   191 LLLASTSEVYGDPEVHPQSEDYWGHVNPIG 220

GO:0005739 "mitochondrion" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|B3KV61 UXS1 "UDP-glucuronate decarboxylase 1, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 107/150 (71%), Positives = 120/150 (80%)

Query:    22 PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP 81
             P++F    +   RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH 
Sbjct:    22 PVKFLSE-KDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHE 79

Query:    82 RFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
              FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR
Sbjct:    80 NFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGAR 139

Query:   142 ILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
             +LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct:   140 LLLASTSEVYGDPEVHPQSEDYWGHVNPIG 169

GO:0000166 "nucleotide binding" evidence=IEA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0048040 "UDP-glucuronate decarboxylase activity" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R885	UXS1_PONAB	4, ., 1, ., 1, ., 3, 5	0.7608	0.7210	0.3261	yes	no
Q8NBZ7	UXS1_HUMAN	4, ., 1, ., 1, ., 3, 5	0.7608	0.7210	0.3261	yes	no
Q6GMI9	UXS1_DANRE	4, ., 1, ., 1, ., 3, 5	0.7608	0.7210	0.3277	yes	no
Q5PQX0	UXS1_RAT	4, ., 1, ., 1, ., 3, 5	0.7608	0.7210	0.3261	yes	no
Q91XL3	UXS1_MOUSE	4, ., 1, ., 1, ., 3, 5	0.7608	0.7210	0.3261	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	190
cd05230	305	cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase	6e-99
PLN02206	442	PLN02206, PLN02206, UDP-glucuronate decarboxylase	1e-81
PLN02166	436	PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase	1e-80
cd05256	304	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e	1e-35
cd05234	305	cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase,	2e-34
cd05257	316	cd05257, Arna_like_SDR_e, Arna decarboxylase_like,	9e-33
COG0451	314	COG0451, WcaG, Nucleoside-diphosphate-sugar epimer	6e-32
cd08946	200	cd08946, SDR_e, extended (e) SDRs	2e-26
cd05246	315	cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra	2e-25
cd05258	337	cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e	1e-23
pfam01370	233	pfam01370, Epimerase, NAD dependent epimerase/dehy	2e-22
COG1088	340	COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel	2e-21
TIGR04180	297	TIGR04180, EDH_00030, NAD dependent epimerase/dehy	2e-19
cd05247	323	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase,	3e-19
COG1087	329	COG1087, GalE, UDP-glucose 4-epimerase [Cell envel	5e-19
cd05260	316	cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase	1e-18
TIGR01179	328	TIGR01179, galE, UDP-glucose-4-epimerase GalE	3e-18
TIGR01181	317	TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd	3e-17
cd05248	317	cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto	1e-15
cd05253	332	cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera	1e-15
cd08957	307	cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic	4e-15
cd05264	300	cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase	1e-14
cd05273	328	cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-	3e-14
cd05228	318	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr	3e-13
cd05237	287	cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l	3e-13
PLN02427	386	PLN02427, PLN02427, UDP-apiose/xylose synthase	4e-13
COG1086	588	COG1086, COG1086, Predicted nucleoside-diphosphate	5e-13
PRK10084	352	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase;	1e-12
PRK11908	347	PRK11908, PRK11908, NAD-dependent epimerase/dehydr	1e-12
TIGR02197	314	TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep	2e-12
cd05241	331	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d	3e-12
cd05263	293	cd05263, MupV_like_SDR_e, Pseudomonas fluorescens	3e-11
pfam02719	280	pfam02719, Polysacc_synt_2, Polysaccharide biosynt	4e-11
PRK08125	660	PRK08125, PRK08125, bifunctional UDP-glucuronic ac	5e-11
PRK10217	355	PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase;	5e-11
pfam07993	245	pfam07993, NAD_binding_4, Male sterility protein	9e-11
PRK07201	657	PRK07201, PRK07201, short chain dehydrogenase; Pro	1e-10
COG1089	345	COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve	6e-10
pfam01073	280	pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr	1e-09
PRK10675	338	PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro	2e-09
cd05238	305	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n	3e-09
cd05227	301	cd05227, AR_SDR_e, aldehyde reductase, extended (e	5e-09
cd05252	336	cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata	6e-09
cd05240	306	cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase	7e-09
cd09813	335	cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD	2e-08
cd09811	354	cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD	2e-08
PLN02240	352	PLN02240, PLN02240, UDP-glucose 4-epimerase	4e-08
PLN02260	668	PLN02260, PLN02260, probable rhamnose biosynthetic	6e-08
cd08958	293	cd08958, FR_SDR_e, flavonoid reductase (FR), exten	7e-08
PRK15181	348	PRK15181, PRK15181, Vi polysaccharide biosynthesis	8e-08
cd05193	295	cd05193, AR_like_SDR_e, aldehyde reductase, flavon	8e-08
cd05232	303	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase,	1e-07
COG1091	281	COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C	2e-07
TIGR03589	324	TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehyd	4e-07
cd05272	308	cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext	4e-07
TIGR03466	328	TIGR03466, HpnA, hopanoid-associated sugar epimera	6e-07
cd05239	300	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte	9e-07
PRK11150	308	PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epi	1e-06
TIGR01214	287	TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase	1e-06
TIGR04130	337	TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehyd	2e-06
TIGR02622	349	TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra	4e-06
cd05235	290	cd05235, SDR_e1, extended (e) SDRs, subgroup 1	5e-06
cd05226	176	cd05226, SDR_e_a, Extended (e) and atypical (a) SD	1e-05
cd05236	320	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F	1e-05
COG3320	382	COG3320, COG3320, Putative dehydrogenase domain of	1e-05
COG0702	275	COG0702, COG0702, Predicted nucleoside-diphosphate	2e-05
cd05254	280	cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4	4e-05
cd02266	186	cd02266, SDR, Short-chain dehydrogenases/reductase	6e-05
TIGR01472	343	TIGR01472, gmd, GDP-mannose 4,6-dehydratase	1e-04
cd05255	382	cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth	1e-04
cd05245	293	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	1e-04
cd05229	302	cd05229, SDR_a3, atypical (a) SDRs, subgroup 3	0.001
cd05262	291	cd05262, SDR_a7, atypical (a) SDRs, subgroup 7	0.001
PLN02695	370	PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase	0.001
cd05261	248	cd05261, CAPF_like_SDR_e, capsular polysaccharide	0.002
pfam04321	284	pfam04321, RmlD_sub_bind, RmlD substrate binding d	0.004

>gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs

 Score =  287 bits (738), Expect = 6e-99
 Identities = 107/142 (75%), Positives = 122/142 (85%), Gaps = 1/142 (0%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
            RIL+TGGAGF+GSHL D+L+  + +EVI VDN+FTG K N+   IGHP FE IRHDVTE
Sbjct: 1   KRILITGGAGFLGSHLCDRLL-EDGHEVICVDNFFTGRKRNIEHLIGHPNFEFIRHDVTE 59

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
           PL +EVDQIYHLACPASP+ Y+YNP+KT+KTNV+GTLNMLGLAKRVGAR+LL STSEVYG
Sbjct: 60  PLYLEVDQIYHLACPASPVHYQYNPIKTLKTNVLGTLNMLGLAKRVGARVLLASTSEVYG 119

Query: 153 DPLVHPQDESYWGNVNPIGMFS 174
           DP VHPQ ESYWGNVNPIG  S
Sbjct: 120 DPEVHPQPESYWGNVNPIGPRS 141

UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase

 Score =  248 bits (635), Expect = 1e-81
 Identities = 107/142 (75%), Positives = 124/142 (87%), Gaps = 1/142 (0%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           +R++VTGGAGF+GSHLVD+LM    + VIVVDN+FTG K+N+     +P FELIRHDV E
Sbjct: 120 LRVVVTGGAGFVGSHLVDRLMARGDS-VIVVDNFFTGRKENVMHHFSNPNFELIRHDVVE 178

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
           P+L+EVDQIYHLACPASP+ YK+NPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSEVYG
Sbjct: 179 PILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYG 238

Query: 153 DPLVHPQDESYWGNVNPIGMFS 174
           DPL HPQ E+YWGNVNPIG+ S
Sbjct: 239 DPLQHPQVETYWGNVNPIGVRS 260

Length = 442

>gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase

 Score =  245 bits (627), Expect = 1e-80
 Identities = 112/145 (77%), Positives = 127/145 (87%), Gaps = 1/145 (0%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +  +RI+VTGGAGF+GSHLVDKL+    +EVIV+DN+FTG K+NL    G+PRFELIRHD
Sbjct: 118 RKRLRIVVTGGAGFVGSHLVDKLI-GRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHD 176

Query: 90  VTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149
           V EP+L+EVDQIYHLACPASP+ YKYNPVKTIKTNV+GTLNMLGLAKRVGAR LLTSTSE
Sbjct: 177 VVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSE 236

Query: 150 VYGDPLVHPQDESYWGNVNPIGMFS 174
           VYGDPL HPQ E+YWGNVNPIG  S
Sbjct: 237 VYGDPLEHPQKETYWGNVNPIGERS 261

Length = 436

>gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs

 Score =  126 bits (318), Expect = 1e-35
 Identities = 67/163 (41%), Positives = 94/163 (57%), Gaps = 21/163 (12%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
           R+LVTGGAGFIGSHLV++L+E   +EVIV+DN  TG K+NL +    P  + I  D+   
Sbjct: 1   RVLVTGGAGFIGSHLVERLLERG-HEVIVLDNLSTGKKENLPE--VKPNVKFIEGDIRDD 57

Query: 92  ---EPLLIEVDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
              E     VD ++H A  AS P   + +P+K  + NV+GTLN+L  A++ G  R +  S
Sbjct: 58  ELVEFAFEGVDYVFHQAAQASVPRSIE-DPIKDHEVNVLGTLNLLEAARKAGVKRFVYAS 116

Query: 147 TSEVYGDPLVHPQDESYWGN-VNPIGMFSFVLKDGIMKLIGEL 188
           +S VYGDP   P+DE +  N ++P           + K  GEL
Sbjct: 117 SSSVYGDPPYLPKDEDHPPNPLSPY---------AVSKYAGEL 150

This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304

>gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs

 Score =  122 bits (309), Expect = 2e-34
 Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 6/135 (4%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RILVTGGAGFIGSHLVD+L+E E NEV+VVDN  +G ++N+     +  F  ++ D+ + 
Sbjct: 1   RILVTGGAGFIGSHLVDRLLE-EGNEVVVVDNLSSGRRENIEPEFENKAFRFVKRDLLDT 59

Query: 94  L----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
                  + D ++HLA          +P   ++ NV+ T N+L   +  G  RI+  S+S
Sbjct: 60  ADKVAKKDGDTVFHLAANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVKRIVFASSS 119

Query: 149 EVYGDPLVHPQDESY 163
            VYG+  V P  E Y
Sbjct: 120 TVYGEAKVIPTPEDY 134

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs

 Score =  118 bits (299), Expect = 9e-33
 Identities = 51/135 (37%), Positives = 72/135 (53%), Gaps = 7/135 (5%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
            +LVTG  GFIGSHL ++L+  E +EV  +D Y + +   L     H RF  I  DV + 
Sbjct: 1   NVLVTGADGFIGSHLTERLLR-EGHEVRALDIYNSFNSWGLLDNAVHDRFHFISGDVRDA 59

Query: 94  LLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTST 147
             +E      D ++HLA   +  +    P+  ++TNV GTLN+L  A  +   R++ TST
Sbjct: 60  SEVEYLVKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKRVVHTST 119

Query: 148 SEVYGDPLVHPQDES 162
           SEVYG     P DE 
Sbjct: 120 SEVYGTAQDVPIDED 134

Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316

>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score =  116 bits (292), Expect = 6e-32
 Identities = 57/160 (35%), Positives = 79/160 (49%), Gaps = 13/160 (8%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MRILVTGGAGFIGSHLV++L+    ++V  +D    G        +     +L   D+ +
Sbjct: 1   MRILVTGGAGFIGSHLVERLLA-AGHDVRGLDRLRDGLDPL-LSGVEFVVLDLTDRDLVD 58

Query: 93  PLLIEV-DQIYHLACPASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVG-ARILLTST-S 148
            L   V D + HLA  +S       +P + +  NV GTLN+L  A+  G  R +  S+ S
Sbjct: 59  ELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVS 118

Query: 149 EVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
            VYGDP   P DE   G   P+  +      G+ KL  E 
Sbjct: 119 VVYGDPPPLPIDEDL-GPPRPLNPY------GVSKLAAEQ 151

Length = 314

>gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs

 Score = 99.7 bits (249), Expect = 2e-26
 Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 34/133 (25%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           ILVTGGAGFIGSHLV +L     +EV+V+D                              
Sbjct: 1   ILVTGGAGFIGSHLVRRL-LERGHEVVVIDRL---------------------------- 31

Query: 95  LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD 153
               D + HLA          NP +  +TNV+GTLN+L  A++ G  R +  S++ VYG 
Sbjct: 32  ----DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRFVYASSASVYGS 87

Query: 154 PLVHPQDESYWGN 166
           P   P++E     
Sbjct: 88  PEGLPEEEETPPR 100

Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200

>gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

 Score = 99.2 bits (248), Expect = 2e-25
 Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 18/135 (13%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDV 90
           M+ILVTGGAGFIGS+ V  L+    + ++I +D   + G+ +NL      PR+  ++ D+
Sbjct: 1   MKILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYAGNLENLEDVSSSPRYRFVKGDI 60

Query: 91  TEPLLI-------EVDQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
            +  L+       ++D + H A       S I    +P   I+TNV+GT  +L  A++ G
Sbjct: 61  CDAELVDRLFEEEKIDAVIHFAAESHVDRS-I---SDPEPFIRTNVLGTYTLLEAARKYG 116

Query: 140 A-RILLTSTSEVYGD 153
             R +  ST EVYGD
Sbjct: 117 VKRFVHISTDEVYGD 131

This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315

>gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs

 Score = 95.4 bits (238), Expect = 1e-23
 Identities = 45/133 (33%), Positives = 66/133 (49%), Gaps = 14/133 (10%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN----YFTGSKDNLRKWIGHPRFELIRH 88
           MR+L+TGGAGFIGS+L    ++    EVI  DN       G+   L+          +  
Sbjct: 1   MRVLITGGAGFIGSNLARFFLKQG-WEVIGFDNLMRRGSFGNLAWLKANREDGGVRFVHG 59

Query: 89  DV-----TEPLLIEVDQIYHLAC-PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A 140
           D+      E L  ++D I H A  P+       +P    +TN +GTLN+L  A++    A
Sbjct: 60  DIRNRNDLEDLFEDIDLIIHTAAQPSVTTSAS-SPRLDFETNALGTLNVLEAARQHAPNA 118

Query: 141 RILLTSTSEVYGD 153
             + TST++VYGD
Sbjct: 119 PFIFTSTNKVYGD 131

CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337

>gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family

 Score = 90.0 bits (224), Expect = 2e-22
 Identities = 48/141 (34%), Positives = 64/141 (45%), Gaps = 23/141 (16%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           ILVTGG GFIGSHLV +L++        V       +      +   R      D+T+P 
Sbjct: 1   ILVTGGTGFIGSHLVRRLLQEG----YEVIVLGRRRRSES---LNTGRIRFHEGDLTDPD 53

Query: 95  LIE-------VDQIYHLA----CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RI 142
            +E        D + HLA      AS      +P   I+ NV+GTL +L  A+R G  R 
Sbjct: 54  ALERLLAEVQPDAVIHLAAQSGVGAS----FEDPADFIRANVLGTLRLLEAARRAGVKRF 109

Query: 143 LLTSTSEVYGDPLVHPQDESY 163
           +  S+SEVYGD    P  E  
Sbjct: 110 VFASSSEVYGDVADPPITEDT 130

This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233

>gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

 Score = 88.8 bits (221), Expect = 2e-21
 Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 19/136 (13%)

Query: 33  MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVD--NYFTGSKDNLRKWIGHPRFELIRHD 89
           M+ILVTGGAGFIGS+ V  ++     + V+ +D   Y  G+ +NL      PR+  ++ D
Sbjct: 1   MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTY-AGNLENLADVEDSPRYRFVQGD 59

Query: 90  VTEPLLIE-------VDQIYHLACPAS---PIFYKYNPVKTIKTNVIGTLNMLGLAKR-- 137
           + +  L++        D + H A  +     I     P   I+TNV+GT  +L  A++  
Sbjct: 60  ICDRELVDRLFKEYQPDAVVHFAAESHVDRSI---DGPAPFIQTNVVGTYTLLEAARKYW 116

Query: 138 VGARILLTSTSEVYGD 153
              R    ST EVYGD
Sbjct: 117 GKFRFHHISTDEVYGD 132

Length = 340

>gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family

 Score = 82.7 bits (205), Expect = 2e-19
 Identities = 50/139 (35%), Positives = 72/139 (51%), Gaps = 12/139 (8%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFT--GSKDNLRKWIGHPRFELIRHDVT 91
           +LVTG  GFIGSHLV+ L+         V+ N F   G  D     +   + E++  D+ 
Sbjct: 1   VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPEV-KDKIEVVTGDIR 59

Query: 92  EPLLIE-----VDQIYHLACPASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVG-ARILL 144
           +P  +       D ++HLA   + I Y Y  P   + TNV GTLN+L  A+ +G  +++ 
Sbjct: 60  DPDSVRKAMKGCDVVFHLAALIA-IPYSYIAPDSYVDTNVTGTLNVLQAARDLGVEKVVH 118

Query: 145 TSTSEVYGDPLVHPQDESY 163
           TSTSEVYG     P DE +
Sbjct: 119 TSTSEVYGTAQYVPIDEKH 137

This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297

>gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs

 Score = 83.0 bits (206), Expect = 3e-19
 Identities = 45/143 (31%), Positives = 70/143 (48%), Gaps = 22/143 (15%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           ++LVTGGAG+IGSH V +L+E    +V+V+DN   G ++ L   I   R E    D+ + 
Sbjct: 1   KVLVTGGAGYIGSHTVVELLE-AGYDVVVLDNLSNGHREAL-PRIEKIRIEFYEGDIRDR 58

Query: 94  LLIE-------VDQIYHLACPASPIFYKY------NPVKTIKTNVIGTLNMLGLAKRVGA 140
             ++       +D + H A        K        P+K    NV+GTLN+L   +  G 
Sbjct: 59  AALDKVFAEHKIDAVIHFAA------LKAVGESVQKPLKYYDNNVVGTLNLLEAMRAHGV 112

Query: 141 -RILLTSTSEVYGDPLVHPQDES 162
              + +S++ VYG+P   P  E 
Sbjct: 113 KNFVFSSSAAVYGEPETVPITEE 135

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323

>gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

 Score = 82.2 bits (204), Expect = 5e-19
 Identities = 48/144 (33%), Positives = 71/144 (49%), Gaps = 25/144 (17%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
           M++LVTGGAG+IGSH V +L++   +EV+V+DN   G K  L K       +    D+  
Sbjct: 1   MKVLVTGGAGYIGSHTVRQLLKT-GHEVVVLDNLSNGHKIALLKLQF----KFYEGDLLD 55

Query: 92  EPLLIEV------DQIYHLACPASPIFYKY------NPVKTIKTNVIGTLNMLGLAKRVG 139
             LL  V      D + H A                NP+K    NV+GTLN++    + G
Sbjct: 56  RALLTAVFEENKIDAVVHFAA------SISVGESVQNPLKYYDNNVVGTLNLIEAMLQTG 109

Query: 140 AR-ILLTSTSEVYGDPLVHPQDES 162
            +  + +ST+ VYG+P   P  E+
Sbjct: 110 VKKFIFSSTAAVYGEPTTSPISET 133

Length = 329

>gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs

 Score = 81.1 bits (201), Expect = 1e-18
 Identities = 44/143 (30%), Positives = 61/143 (42%), Gaps = 18/143 (12%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIRH 88
           R L+TG  G  GS+L + L+E    EV  +      S       I H      R  L   
Sbjct: 1   RALITGITGQDGSYLAEFLLEK-GYEVHGIV---RRSSSFNTDRIDHLYINKDRITLHYG 56

Query: 89  DVTEPL-LIEV------DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK--RVG 139
           D+T+   L         D+IYHLA  +       +P  T + N +GTLN+L   +   + 
Sbjct: 57  DLTDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILGLD 116

Query: 140 ARILLTSTSEVYGDPLVHPQDES 162
           AR    S+SE YG     PQ E+
Sbjct: 117 ARFYQASSSEEYGKVQELPQSET 139

GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316

>gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE

 Score = 80.1 bits (198), Expect = 3e-18
 Identities = 51/160 (31%), Positives = 84/160 (52%), Gaps = 16/160 (10%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPR-FELIRHDVTE 92
           +ILVTGGAG+IGSH V +L+E+   EV+++DN   GS++ L            +  D+ +
Sbjct: 1   KILVTGGAGYIGSHTVRQLLESGH-EVVILDNLSNGSREAL-PRGERITPVTFVEGDLRD 58

Query: 93  PLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL 144
             L+       ++D + H A   +       P+K  + NV+GTLN+L   ++ G  + + 
Sbjct: 59  RELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKKFIF 118

Query: 145 TSTSEVYGDPLVHPQDESY-WGNVNPIG----MFSFVLKD 179
           +S++ VYG+P   P  E    G +NP G    M   +L+D
Sbjct: 119 SSSAAVYGEPSSIPISEDSPLGPINPYGRSKLMSEQILRD 158

Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328

>gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase

 Score = 77.4 bits (191), Expect = 3e-17
 Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 13/132 (9%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDV 90
           RILVTGGAGFIGS+ V + + NE    EVIV+D   + G+ +NL     +PR+  ++ D+
Sbjct: 1   RILVTGGAGFIGSNFV-RYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDI 59

Query: 91  TEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGAR 141
            +  L+       + D + H A  +        P   I+TNV+GT  +L   ++     R
Sbjct: 60  GDRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFR 119

Query: 142 ILLTSTSEVYGD 153
               ST EVYGD
Sbjct: 120 FHHISTDEVYGD 131

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317

>gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 14/149 (9%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRK-----WIGHPRF-ELIR 87
           I+VTGGAGFIGS+LV  L E    +++VVDN   G K  NL       +I    F + +R
Sbjct: 2   IIVTGGAGFIGSNLVKALNERGITDILVVDNLSNGEKFKNLVGLKIADYIDKDDFKDWVR 61

Query: 88  HDVTEPLLIEVDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
               E   IE   I+H  AC  +      +    +  N   T  +L        R +  S
Sbjct: 62  KG-DENFKIEA--IFHQGACSDTTET---DGKYMMDNNYQYTKELLHYCLEKKIRFIYAS 115

Query: 147 TSEVYGDPLVHPQDESYWGNVNPIGMFSF 175
           ++ VYG+  +   ++    N+ P+ ++ +
Sbjct: 116 SAAVYGNGSLGFAEDIETPNLRPLNVYGY 144

This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317

>gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs

 Score = 73.1 bits (180), Expect = 1e-15
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 14/133 (10%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN---YFTGS--KDNLRKWIGHPRFELIR 87
           M+ILVTG AGFIG H+  +L+E   +EV+ +DN   Y+     +  L        F+ ++
Sbjct: 1   MKILVTGAAGFIGFHVAKRLLE-RGDEVVGIDNLNDYYDVRLKEARLELLGKSGGFKFVK 59

Query: 88  HDVTEPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA 140
            D+ +   +       E D + HLA  A   +   NP   + +N++G LN+L L +  G 
Sbjct: 60  GDLEDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYVDSNIVGFLNLLELCRHFGV 119

Query: 141 R-ILLTSTSEVYG 152
           + ++  S+S VYG
Sbjct: 120 KHLVYASSSSVYG 132

This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332

>gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs

 Score = 71.4 bits (175), Expect = 4e-15
 Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 21/133 (15%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M++L+TGGAG IGSHL++ L+E   ++V+V+DN+ TG +++L     HP   ++   + +
Sbjct: 1   MKVLITGGAGQIGSHLIEHLLER-GHQVVVIDNFATGRREHLPD---HPNLTVVEGSIAD 56

Query: 93  PLLIEV-------DQIYHLACPASPIFYKYNP---VKTIKTNVIGTLNMLGLAKRVGA-R 141
             L++        D + H A  A+   YK +P    +   TNV+G  N++  AK+ G  R
Sbjct: 57  KALVDKLFGDFKPDAVVHTA--AA---YK-DPDDWYEDTLTNVVGGANVVQAAKKAGVKR 110

Query: 142 ILLTSTSEVYGDP 154
           ++   T+  YG  
Sbjct: 111 LIYFQTALCYGLK 123

Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307

>gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs

 Score = 69.7 bits (171), Expect = 1e-14
 Identities = 46/136 (33%), Positives = 61/136 (44%), Gaps = 14/136 (10%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           R+L+ GG GFIGSHLVD L+E     V V D         L         + I+ D    
Sbjct: 1   RVLIVGGNGFIGSHLVDALLEEGPQ-VRVFDRSI--PPYELPLG----GVDYIKGDYENR 53

Query: 94  LLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL--AKRVGARILLTS 146
             +E     +D + HLA   +P     NP+  I+TNV  T+ +L    A  +G  I  +S
Sbjct: 54  ADLESALVGIDTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKIIFASS 113

Query: 147 TSEVYGDPLVHPQDES 162
              VYG P   P  ES
Sbjct: 114 GGTVYGVPEQLPISES 129

This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs

 Score = 69.4 bits (170), Expect = 3e-14
 Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 3/120 (2%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           R LVTG  GFIGSHL ++L   E + V   D                   +L   +    
Sbjct: 2   RALVTGAGGFIGSHLAERLKA-EGHYVRGADWKSPEHMTQPTDDDEFHLVDLREMENCLK 60

Query: 94  LLIEVDQIYHLACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY 151
               VD ++HLA     + Y + N    +  N +   NML  A+  G  R L  S++ VY
Sbjct: 61  ATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVERFLFASSACVY 120

This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328

>gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs

 Score = 66.2 bits (162), Expect = 3e-13
 Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 16/127 (12%)

Query: 35  ILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           ILVTG  GF+GS+LV  L+    +   +V      GS   L         E++  D+T+ 
Sbjct: 1   ILVTGATGFLGSNLVRALLAQGYRVRALVRS----GSDAVLLD---GLPVEVVEGDLTDA 53

Query: 94  LLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 147
             +       D+++HLA   S  + K    +  +TNV GT N+L  A   G  R++ TS+
Sbjct: 54  ASLAAAMKGCDRVFHLAAFTSL-WAKDRK-ELYRTNVEGTRNVLDAALEAGVRRVVHTSS 111

Query: 148 SEVYGDP 154
               G P
Sbjct: 112 IAALGGP 118

This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318

>gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs

 Score = 66.1 bits (162), Expect = 3e-13
 Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 23/134 (17%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS---KDNLRKWIGHPRFELIR 87
               ILVTGGAG IGS LV ++++    ++IV D            LR    H +   I 
Sbjct: 1   KGKTILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLHELVRELRSRFPHDKLRFII 60

Query: 88  HDVTEPLLI-------EVDQIYHLACPASPIFYK------YNPVKTIKTNVIGTLNMLGL 134
            DV +   +         D ++H A        K       NP + IKTNV+GT N++  
Sbjct: 61  GDVRDKERLRRAFKERGPDIVFHAAA------LKHVPSMEDNPEEAIKTNVLGTKNVIDA 114

Query: 135 AKRVG-ARILLTST 147
           A   G  + +  ST
Sbjct: 115 AIENGVEKFVCIST 128

UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287

>gnl|CDD|178047 PLN02427, PLN02427, UDP-apiose/xylose synthase

 Score = 66.0 bits (161), Expect = 4e-13
 Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 15/147 (10%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK----WIGHPRFEL--I 86
           + I + G  GFIGSHL +KLM    ++V+ +D Y    K  L      W G  +F    I
Sbjct: 15  LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINI 74

Query: 87  RHDVTEPLLIEV-DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLT 145
           +HD     LI++ D   +LA   +P  Y   P+ TI +N I  L ++        R++  
Sbjct: 75  KHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHF 134

Query: 146 STSEVYGD------PLVHP--QDESYW 164
           ST EVYG       P  HP  QD +++
Sbjct: 135 STCEVYGKTIGSFLPKDHPLRQDPAFY 161

Length = 386

>gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 66.1 bits (162), Expect = 5e-13
 Identities = 42/164 (25%), Positives = 64/164 (39%), Gaps = 35/164 (21%)

Query: 15  KPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN--------- 65
           +PP                 +LVTGG G IGS L  ++++    E+I+            
Sbjct: 234 RPPVALDTELIGAMLT-GKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLID 292

Query: 66  -YFTGSKDNLRKW--IGHPR-FELIRHDVTEPLLIEVDQIYHLACPASPIFYK------Y 115
                    L+    IG  R  + +   +      +VD ++H A        K      Y
Sbjct: 293 MELREKFPELKLRFYIGDVRDRDRVERAMEG---HKVDIVFHAAA------LKHVPLVEY 343

Query: 116 NPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVHP 158
           NP + IKTNV+GT N+   A + G  + +L ST     D  V+P
Sbjct: 344 NPEEAIKTNVLGTENVAEAAIKNGVKKFVLIST-----DKAVNP 382

Length = 588

>gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional

 Score = 64.8 bits (158), Expect = 1e-12
 Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 23/148 (15%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVT 91
           M+ILVTGGAGFIGS +V  ++ N ++ V+ VD   + G+ ++L       R+     D+ 
Sbjct: 1   MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADIC 60

Query: 92  EPLLIEVDQIY---------HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA------- 135
           +    E+D+I+         HLA  +        P   I+TN++GT  +L  A       
Sbjct: 61  D--RAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSAL 118

Query: 136 ---KRVGARILLTSTSEVYGDPLVHPQD 160
              K+   R    ST EVYGD L HP +
Sbjct: 119 DEDKKNAFRFHHISTDEVYGD-LPHPDE 145

Length = 352

>gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family protein; Provisional

 Score = 64.7 bits (158), Expect = 1e-12
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 10/126 (7%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
            ++L+ G  GFIG HL  +++E    EV  +D       D L   + HPR      D+T 
Sbjct: 2   KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM----QTDRLGDLVNHPRMHFFEGDITI 57

Query: 92  -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
                E  + + D I  L   A+P  Y   P++  + +    L ++  A + G  ++  S
Sbjct: 58  NKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPS 117

Query: 147 TSEVYG 152
           TSEVYG
Sbjct: 118 TSEVYG 123

Length = 347

>gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 21/130 (16%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEP 93
           I+VTGGAGFIGS+LV  L E    +++VVDN   G K  NL          +I   + + 
Sbjct: 1   IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHKFLNLAD-------LVIADYIDKE 53

Query: 94  LLIE---------VDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
             ++         ++ I+H  AC  +    + +    ++ N   +  +L      G   +
Sbjct: 54  DFLDRLEKGAFGKIEAIFHQGACSDT---TETDGEYMMENNYQYSKRLLDWCAEKGIPFI 110

Query: 144 LTSTSEVYGD 153
             S++  YGD
Sbjct: 111 YASSAATYGD 120

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314

>gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs

 Score = 63.6 bits (155), Expect = 3e-12
 Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 15/137 (10%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
            +LVTGG+GF G  LV +L+E     V   D    G    L  W  HP  E ++ D+T+ 
Sbjct: 1   SVLVTGGSGFFGERLVKQLLERGGTYVRSFDIAPPGEA--LSAW-QHPNIEFLKGDITDR 57

Query: 94  LLIE-----VDQIYHLACPASPIFYKYNPVKTI-KTNVIGTLNMLGLAKRVGARILL-TS 146
             +E      D ++H A           P     + NV GT N+L   +R G +  + TS
Sbjct: 58  NDVEQALSGADCVFHTAAIVPL----AGPRDLYWEVNVGGTQNVLDACQRCGVQKFVYTS 113

Query: 147 TSEV-YGDPLVHPQDES 162
           +S V +G   +H  DE+
Sbjct: 114 SSSVIFGGQNIHNGDET 130

Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331

>gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 20/122 (16%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDV 90
           + VTGG GF+G HLV +L+EN    +++V +      +   +         R  ++  D+
Sbjct: 1   VFVTGGTGFLGRHLVKRLLENGFKVLVLVRS--ESLGEAHERIEEAGLEADRVRVLEGDL 58

Query: 91  TEP-----------LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
           T+P           L  +VD + H A  AS   ++       +TN+ GT ++L LA R+ 
Sbjct: 59  TQPNLGLSAAASRELAGKVDHVIHCA--ASY-DFQAPNEDAWRTNIDGTEHVLELAARLD 115

Query: 140 AR 141
            +
Sbjct: 116 IQ 117

This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein

 Score = 59.8 bits (146), Expect = 4e-11
 Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 23/130 (17%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLRKWIGHPRFELIRHDVT 91
           +LVTGG G IGS L  ++++    ++I+         +    LR+    P+      DV 
Sbjct: 1   VLVTGGGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIRQELRQEYNDPKLRFFIGDVR 60

Query: 92  EPLLIE-------VDQIYHLACPASPIFYK------YNPVKTIKTNVIGTLNMLGLAKRV 138
           +   +E       VD ++H A        K      YNP++ IKTNV+GT N+   A   
Sbjct: 61  DRERLERAMEQHGVDTVFHAAA------LKHVPLVEYNPMEAIKTNVLGTENVAEAAIEN 114

Query: 139 GA-RILLTST 147
           G  + +L ST
Sbjct: 115 GVEKFVLIST 124

This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280

>gnl|CDD|236156 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

 Score = 60.4 bits (147), Expect = 5e-11
 Identities = 43/129 (33%), Positives = 69/129 (53%), Gaps = 18/129 (13%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           R+L+ G  GFIG+HL ++L+ ++  EV  +D    GS D + +++GHPRF  +  D++  
Sbjct: 317 RVLILGVNGFIGNHLTERLLRDDNYEVYGLD---IGS-DAISRFLGHPRFHFVEGDIS-- 370

Query: 94  LLIEVDQI-YH---------LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
             I  + I YH         L   A+PI Y  NP++  + +    L ++    +   RI+
Sbjct: 371 --IHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRII 428

Query: 144 LTSTSEVYG 152
             STSEVYG
Sbjct: 429 FPSTSEVYG 437

Length = 660

>gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional

 Score = 60.0 bits (145), Expect = 5e-11
 Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 20/148 (13%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTE 92
           +IL+TGGAGFIGS LV  ++    + V+VVD   + G+  +L       RF   + D+ +
Sbjct: 3   KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62

Query: 93  PLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA---------- 135
              +         D + HLA  +        P   I+TN++GT  +L  A          
Sbjct: 63  RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122

Query: 136 KRVGARILLTSTSEVYGDPLVHPQDESY 163
           K+   R    ST EVYGD  +H  D+ +
Sbjct: 123 KKSAFRFHHISTDEVYGD--LHSTDDFF 148

Length = 355

>gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein

 Score = 58.4 bits (142), Expect = 9e-11
 Identities = 36/151 (23%), Positives = 67/151 (44%), Gaps = 30/151 (19%)

Query: 37  VTGGAGFIGSHLVDKLMENEKNEVIVV----DNYFTGSKDNLRKWIGHPRFELIRH---- 88
           +TG  GF+G  L++KL+ +     I       +  +  +   ++ + +  F+ ++     
Sbjct: 1   LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERI 60

Query: 89  -----DVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIK-TNVIGTLNM 131
                D++EP L            EVD I H A  A+  F +  P   ++ TNV+GT  +
Sbjct: 61  IPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNA--ATVNFVE--PYSDLRATNVLGTREV 116

Query: 132 LGLAKRVGARILL-TSTSEVYGDPLVHPQDE 161
           L LAK++        ST+ V G+     +++
Sbjct: 117 LRLAKQMKKLPFHHVSTAYVNGERGGLLEEK 147

This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245

>gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 36/129 (27%), Positives = 51/129 (39%), Gaps = 27/129 (20%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF---TGSKDNLRKWI---GHPRFELI 86
           MR  VTGG GFIG  LV +L++  +   +    +      S   L       G  R   +
Sbjct: 1   MRYFVTGGTGFIGRRLVSRLLDRRREATV----HVLVRRQSLSRLEALAAYWGADRVVPL 56

Query: 87  RHDVTEPLL----------IEVDQIYHLACPASPIFYKYNP--VKTIKTNVIGTLNMLGL 134
             D+TEP L           ++D + HLA       Y            NV GT N++ L
Sbjct: 57  VGDLTEPGLGLSEADIAELGDIDHVVHLAA-----IYDLTADEEAQRAANVDGTRNVVEL 111

Query: 135 AKRVGARIL 143
           A+R+ A   
Sbjct: 112 AERLQAATF 120

Length = 657

>gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

 Score = 57.0 bits (138), Expect = 6e-10
 Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 18/145 (12%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEV--IVVDNY-FTGSKDNLRK--WIGHPRFELIRH 88
             L+TG  G  GS+L  +L+  +  EV  I   +  F   + +L +   +  PR  L   
Sbjct: 4   VALITGITGQDGSYLA-ELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYG 62

Query: 89  DVTEP-----LLIEV--DQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVG- 139
           D+T+      +L EV  D+IY+LA  +   + ++  P  T   + IGTL +L   + +G 
Sbjct: 63  DLTDSSNLLRILEEVQPDEIYNLAAQSHVGVSFE-QPEYTADVDAIGTLRLLEAIRILGE 121

Query: 140 --ARILLTSTSEVYGDPLVHPQDES 162
              R    STSE+YG     PQ E+
Sbjct: 122 KKTRFYQASTSELYGLVQEIPQKET 146

Length = 345

>gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 47/139 (33%), Positives = 63/139 (45%), Gaps = 16/139 (11%)

Query: 36  LVTGGAGFIGSHLVDKLM-ENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP- 93
           LVTGG GF+G H+V  L+ E E  EV V D  F+         +       I  DVT+  
Sbjct: 1   LVTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPELLEDFSKLQ--VITYIEGDVTDKQ 58

Query: 94  ----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL-TSTS 148
                L   D + H A     +F K      +K NV GT N+L    + G R+L+ TS+ 
Sbjct: 59  DLRRALQGSDVVIHTAA-IIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLVYTSSM 117

Query: 149 EV-----YGDPLVHPQDES 162
           EV     YG P +   DE+
Sbjct: 118 EVVGPNSYGQP-IVNGDET 135

The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280

>gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 31/151 (20%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIR 87
           MR+LVTGG+G+IGSH   +L++N  ++V+++DN    SK ++   I       P F  + 
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVVILDN-LCNSKRSVLPVIERLGGKHPTF--VE 56

Query: 88  HDV-TEPLLIE------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLG 133
            D+  E LL E      +D + H A           P+ Y  N       NV GTL ++ 
Sbjct: 57  GDIRNEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-------NVNGTLRLIS 109

Query: 134 LAKRVGAR-ILLTSTSEVYGDPLVHPQDESY 163
             +    + ++ +S++ VYGD    P  ES+
Sbjct: 110 AMRAANVKNLIFSSSATVYGDQPKIPYVESF 140

Length = 338

>gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 14/134 (10%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M++L+TG +GF+G  L ++L+ +  NE +++ +  +    +     G PR   I  D+  
Sbjct: 1   MKVLITGASGFVGQRLAERLLSDVPNERLILIDVVSPKAPS-----GAPRVTQIAGDLAV 55

Query: 93  PLLIEV------DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILL 144
           P LIE       D ++HLA   S      +     + NV GT N+L   ++ G   R + 
Sbjct: 56  PALIEALANGRPDVVFHLAAIVSGGAEA-DFDLGYRVNVDGTRNLLEALRKNGPKPRFVF 114

Query: 145 TSTSEVYGDPLVHP 158
           TS+  VYG PL +P
Sbjct: 115 TSSLAVYGLPLPNP 128

Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 23/153 (15%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHD 89
            +LVTG  GFI SH+V++L++        V +        L+  +       R E +  D
Sbjct: 1   LVLVTGATGFIASHIVEQLLKAGYKVRGTVRS--LSKSAKLKALLKAAGYNDRLEFVIVD 58

Query: 90  VT------EPLLIEVDQIYHLACPASPIFYKYNPVKT--IKTNVIGTLNMLGLAKRVGA- 140
                   +  L  VD + H+   ASP  +     +   I   V GTLN+L  AK  G+ 
Sbjct: 59  DLTAPNAWDEALKGVDYVIHV---ASPFPFTGPDAEDDVIDPAVEGTLNVLEAAKAAGSV 115

Query: 141 -RILLTSTSEVYGDPLVHPQ----DESYWGNVN 168
            R++LTS+    GDP          E  W ++ 
Sbjct: 116 KRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLT 148

This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301

>gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs

 Score = 53.9 bits (130), Expect = 6e-09
 Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 27/152 (17%)

Query: 28  FFQSNMRILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYF-TGSKDNL-RKWIG 79
           F+Q   R+LVTG  GF GS L   L E          +     N F   + DN      G
Sbjct: 1   FWQ-GKRVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTNPNLFELANLDNKISSTRG 59

Query: 80  HPR-FELIRHDVTEPLLIEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLA 135
             R    +R  + E    E + ++HLA  A P+    YK +PV+T +TNV+GT+N+L   
Sbjct: 60  DIRDLNALREAIRE---YEPEIVFHLA--AQPLVRLSYK-DPVETFETNVMGTVNLLEAI 113

Query: 136 KRVG-ARILLTSTSE-VYGDPLVHPQDESYWG 165
           +  G  + ++  TS+  Y +       E  WG
Sbjct: 114 RETGSVKAVVNVTSDKCYEN------KEWGWG 139

This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336

>gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 25/141 (17%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTE 92
           ILVTG AG +G  L  +L  + +   V  +D          R+  G  P+ E +R D+ +
Sbjct: 1   ILVTGAAGGLGRLLARRLAASPRVIGVDGLD---------RRRPPGSPPKVEYVRLDIRD 51

Query: 93  PLLI------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT 145
           P         E D + HLA    P     +  +  + NV GT N+L      G  R+++T
Sbjct: 52  PAAADVFREREADAVVHLAFILDPP---RDGAERHRINVDGTQNVLDACAAAGVPRVVVT 108

Query: 146 STSEVYG----DPLVHPQDES 162
           S+  VYG    +P    +D  
Sbjct: 109 SSVAVYGAHPDNPAPLTEDAP 129

Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306

>gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 25/142 (17%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
             LV GG+GF+G HLV++L+      V V D   T   D         R +    D+T+P
Sbjct: 1   SCLVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELDPSS----SGRVQFHTGDLTDP 56

Query: 94  LLIE-------VDQIYHLACPAS----PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARI 142
             +E        + ++H A P       ++Y        K NV GT N++   ++ G + 
Sbjct: 57  QDLEKAFNEKGPNVVFHTASPDHGSNDDLYY--------KVNVQGTRNVIEACRKCGVKK 108

Query: 143 LL--TSTSEVYGDPLVHPQDES 162
           L+  +S S V+    +   DES
Sbjct: 109 LVYTSSASVVFNGQDIINGDES 130

This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335

>gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 14/130 (10%)

Query: 36  LVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNL---RKWIGHPRFELIRHDV 90
           LVTGG GF+G H++  L+E ++   E+ V+D  F    + +    K  G      I  D+
Sbjct: 3   LVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAF--GPELIEHFEKSQGKTYVTDIEGDI 60

Query: 91  TEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL- 144
            +   +      V  + H A     +F   N  +  + NV GT  +L    +   + L+ 
Sbjct: 61  KDLSFLFRACQGVSVVIHTAAIVD-VFGPPNYEELEEVNVNGTQAVLEACVQNNVKRLVY 119

Query: 145 TSTSEVYGDP 154
           TS+ EV G  
Sbjct: 120 TSSIEVAGPN 129

This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354

>gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 28/141 (19%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---FTGSKDNLRKWIGHPRFELIRHDV 90
            ILVTGGAG+IGSH V +L+     +V+V+DN       +   +++  G     L+ H V
Sbjct: 7   TILVTGGAGYIGSHTVLQLLL-AGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKV 65

Query: 91  T-------EPLLIE--VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
                   E +      D + H A         A P+ Y  N       N++GT+N+L +
Sbjct: 66  DLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDN-------NLVGTINLLEV 118

Query: 135 AKRVGARILLTSTS-EVYGDP 154
             + G + L+ S+S  VYG P
Sbjct: 119 MAKHGCKKLVFSSSATVYGQP 139

Length = 352

>gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme

 Score = 51.3 bits (123), Expect = 6e-08
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 13/131 (9%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKN-EVIVVD--NYFTGSKDNLRKWIGHPRFELIRHDVT 91
           IL+TG AGFI SH+ ++L+ N  + +++V+D  +Y +  K NL      P F+ ++ D+ 
Sbjct: 9   ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLK-NLNPSKSSPNFKFVKGDIA 67

Query: 92  EP-----LLI--EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RI 142
                  LLI   +D I H A          N  +  K N+ GT  +L   K  G   R 
Sbjct: 68  SADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRF 127

Query: 143 LLTSTSEVYGD 153
           +  ST EVYG+
Sbjct: 128 IHVSTDEVYGE 138

Length = 668

>gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs

 Score = 50.7 bits (122), Expect = 7e-08
 Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 20/148 (13%)

Query: 37  VTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP----RFELIRHDVTE 92
           VTG +GFIGS LV +L++        V +   G +  +   +       R +L + D+ +
Sbjct: 3   VTGASGFIGSWLVKRLLQRGYTVRATVRD--PGDEKKVAHLLELEGAKERLKLFKADLLD 60

Query: 93  PLLIE-----VDQIYHLACPASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGA--RILL 144
               +      D ++H+A P    F  +    + I+  V GTLN+L    +  +  R++ 
Sbjct: 61  YGSFDAAIDGCDGVFHVASP--VDFDSEDPEEEMIEPAVKGTLNVLEACAKAKSVKRVVF 118

Query: 145 T-STSEVYGDPLVHPQ---DESYWGNVN 168
           T S + V  +P        DES W +++
Sbjct: 119 TSSVAAVVWNPNRGEGKVVDESCWSDLD 146

This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional

 Score = 50.9 bits (121), Expect = 8e-08
 Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 22/148 (14%)

Query: 26  SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RK 76
           +K   +  R L+TG AGFIGS L+++L+   +  VI +DN+ TG + NL          +
Sbjct: 9   TKLVLAPKRWLITGVAGFIGSGLLEELLFLNQT-VIGLDNFSTGYQHNLDDVRTSVSEEQ 67

Query: 77  WIGHPRFELIRHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM 131
           W    RF  I+ D+      +     VD + H A   S      +P+ T   N+ G LNM
Sbjct: 68  W---SRFIFIQGDIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNM 124

Query: 132 LGLAKRVG-ARILLTSTSEVYGDPLVHP 158
           L  A+    +     ++S  YGD   HP
Sbjct: 125 LTAARDAHVSSFTYAASSSTYGD---HP 149

Length = 348

>gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs

 Score = 50.7 bits (121), Expect = 8e-08
 Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 37/154 (24%)

Query: 35  ILVTGGAGFIGSHLVDKLME-------------NEKNEVIVVDNYFTGSKDNLRKWIGHP 81
           +LVTG +GF+ SH+V++L+E               K    ++D         L    G  
Sbjct: 1   VLVTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVNHLLD---------LDAKPGR- 50

Query: 82  RFELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
             EL   D+T+    +        ++H+A P S  F   +P + IK  + GTLN L  A 
Sbjct: 51  -LELAVADLTDEQSFDEVIKGCAGVFHVATPVS--FSSKDPNEVIKPAIGGTLNALKAAA 107

Query: 137 RVGA--RILLTSTSEVYGDPLVHPQ----DESYW 164
              +  R +LTS++     P  + +    DE  W
Sbjct: 108 AAKSVKRFVLTSSAGSVLIPKPNVEGIVLDEKSW 141

This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295

>gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 22/133 (16%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           ++LVTG  GFIG  LVDKL+   +   I V N                  EL   D    
Sbjct: 1   KVLVTGANGFIGRALVDKLLSRGEEVRIAVRN-------AENAEPSVVLAELPDIDSFTD 53

Query: 94  LLIEVDQIYHLAC------PASPIFY-KYNPVKTIKTNVIGTLNMLGLAKRVGAR--ILL 144
           L + VD + HLA                Y  V     N   T  +   A R G +  + L
Sbjct: 54  LFLGVDAVVHLAARVHVMNDQGADPLSDYRKV-----NTELTRRLARAAARQGVKRFVFL 108

Query: 145 TSTSEVYGDPLVH 157
            S+ +V G+  V 
Sbjct: 109 -SSVKVNGEGTVG 120

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303

>gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 23/123 (18%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M+IL+TG  G +G+ L   L      EVI  D                   ++   D   
Sbjct: 1   MKILITGANGQLGTELRRALPGEF--EVIATD---------------RAELDITDPDAVL 43

Query: 93  PLLIEV--DQIYHLACPASPIFYK--YNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS 148
            ++ E   D + + A  A     K    P      N  G  N+   A  VGAR++  ST 
Sbjct: 44  EVIRETRPDVVINAA--AYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTD 101

Query: 149 EVY 151
            V+
Sbjct: 102 YVF 104

Length = 281

>gnl|CDD|132628 TIGR03589, PseB, UDP-N-acetylglucosamine 4,6-dehydratase

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 23/118 (19%)

Query: 29  FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-----GHPRF 83
             +N  IL+TGG G  G   + +L+EN   + I++  Y   S+D L++W        P  
Sbjct: 1   MFNNKSILITGGTGSFGKAFISRLLENYNPKKIII--Y---SRDELKQWEMQQKFPAPCL 55

Query: 84  ELIRHDVT-----EPLLIEVDQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNML 132
                DV         L  VD + H A     PA+    +YNP + I+TN+ G  N++
Sbjct: 56  RFFIGDVRDKERLTRALRGVDYVVHAAALKQVPAA----EYNPFECIRTNINGAQNVI 109

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Length = 324

>gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 41/130 (31%), Positives = 54/130 (41%), Gaps = 20/130 (15%)

Query: 34  RILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFE--LIRHDV 90
           RIL+TGG G IGS L   L +   K+ VI  D         +RK   H          DV
Sbjct: 1   RILITGGLGQIGSELAKLLRKRYGKDNVIASD---------IRKPPAHVVLSGPFEYLDV 51

Query: 91  TEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
            +   +E       +  I HLA   S +  K NP      N+ G  N+L LA+    RI 
Sbjct: 52  LDFKSLEEIVVNHKITWIIHLAALLSAVGEK-NPPLAWDVNMNGLHNVLELAREHNLRIF 110

Query: 144 LTSTSEVYGD 153
           + ST   +G 
Sbjct: 111 VPSTIGAFGP 120

This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308

>gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 16/122 (13%)

Query: 33  MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           M++LVTG  GF+GS +V  L+E  E+  V+V          + R   G    E++  D+ 
Sbjct: 1   MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPT------SDRRNLEGLD-VEIVEGDLR 53

Query: 92  EPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT 145
           +P  +         ++H+A  A    +  +P +    NV GT N+L  A   G  R++ T
Sbjct: 54  DPASLRKAVAGCRALFHVA--ADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYT 111

Query: 146 ST 147
           S+
Sbjct: 112 SS 113

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328

>gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs

 Score = 47.6 bits (114), Expect = 9e-07
 Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 21/135 (15%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-NLRKWIGHPRFELIRHDVTE 92
           +ILVTG  G +GS +V  L       V+     F  SK+ +L              +   
Sbjct: 1   KILVTGHRGLVGSAIVRVLARRGYENVV-----FRTSKELDLTDQ-----------EAVR 44

Query: 93  PLLIEV--DQIYHLACPASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVGARILLT-STS 148
               +   D + HLA     I      P   ++ N++   N++  A R G + L+   +S
Sbjct: 45  AFFEKEKPDYVIHLAAKVGGIVANMTYPADFLRDNLLINDNVIHAAHRFGVKKLVFLGSS 104

Query: 149 EVYGDPLVHPQDESY 163
            +Y D    P DES 
Sbjct: 105 CIYPDLAPQPIDESD 119

GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK 71
          I+VTGGAGFIGS++V  L +    +++VVDN   G+K
Sbjct: 2  IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK 38

Length = 308

>gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 40/161 (24%), Positives = 60/161 (37%), Gaps = 34/161 (21%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TG  G +G  LV +L   E   V+ +                  + +L   +  E 
Sbjct: 1   RILITGANGQLGRELVQQLS-PEGRVVVALT---------------RSQLDLTDPEALER 44

Query: 94  LL--IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY 151
           LL  I  D + + A        + +P K    N +   N+   A R GAR++  ST  V+
Sbjct: 45  LLRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVF 104

Query: 152 ----GDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
                 P     D       NP+ ++      G  KL GE 
Sbjct: 105 DGEGKRPY-REDDA-----TNPLNVY------GQSKLAGEQ 133

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287

>gnl|CDD|200381 TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 33/124 (26%), Positives = 63/124 (50%), Gaps = 8/124 (6%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           +L+TGG G  G+ ++ + ++ +  E+ +        +D++RK   + + +    DV +  
Sbjct: 7   LLITGGTGSFGNAVLRRFLDTDIKEIRIFSRD-EKKQDDMRKKYNNSKLKFYIGDVRDYR 65

Query: 95  LI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNML--GLAKRVGARILLTST 147
            I      VD IYH A        +++P++ +KTNV+GT N+L   +A  V   + L++ 
Sbjct: 66  SILNATRGVDFIYHAAALKQVPSCEFHPMEAVKTNVLGTENVLEAAIANGVKRVVCLSTD 125

Query: 148 SEVY 151
             VY
Sbjct: 126 KAVY 129

The FnlA enzyme is the first step in the biosynthesis of UDP-FucNAc from UDP-GlcNAc in E. coli (along with FnlB and FnlC). The proteins identified by this model include FnlA homologs in the O-antigen clusters of O4, O25, O26, O29 (Shigella D11), O118, O145 and O172 serotype strains, all of which produce O-antigens containing FucNAc (or the further modified FucNAm). A homolog from Pseudomonas aerugiosa serotype O11, WbjB, also involved in the biosynthesis of UDP-FucNAc has been characterized and is now believed to carry out both the initial 4,6-dehydratase reaction and the subsequent epimerization of the resulting methyl group at C-5. A phylogenetic tree of related sequences shows a distinct clade of enzymes involved in the biosynthesis of UDP-QuiNAc (Qui=qinovosamine). This clade appears to be descendant from the common ancestor of the Pseudomonas and E. coli fucose-biosynthesis enzymes. It has been hypothesized that the first step in the biosynthesis of these two compounds may be the same, and thus that these enzymes all have the same function. At present, lacking sufficient confirmation of this, the current model trusted cutoff only covers the tree segment surrounding the E. coli genes. The clades containing the Pseudomonas and QuiNAc biosynthesis enzymes score above the noise cutoff. Immediately below the noise cutoff are enzymes involved in the biosynthesis of UDP-RhaNAc (Rha=rhamnose), which again may or may not produce the same product. Length = 337

>gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 28/152 (18%)

Query: 29  FQSNMRILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYFT--GSKDNLRKWIGH 80
           F    ++LVTG  GF GS L   L+E          +     N F        +    G 
Sbjct: 1   FWQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGD 60

Query: 81  PR-FELIRHDVTEPLLIEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK 136
            R    +R  + E    + + ++HLA  A P+    Y   P++T +TNV+GT+N+L   +
Sbjct: 61  IRDAAKLRKAIAE---FKPEIVFHLA--AQPLVRKSYAD-PLETFETNVMGTVNLLEAIR 114

Query: 137 RVG---ARILLTSTSEVYGDPLVHPQDESYWG 165
            +G   A + +T + + Y +      DE  WG
Sbjct: 115 AIGSVKAVVNVT-SDKCYRN------DEWVWG 139

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349

>gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1

 Score = 45.3 bits (108), Expect = 5e-06
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 36/131 (27%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVV------------------DNYFTGSKDNLR 75
            +L+TG  GF+G++L+ +L++ +    I                      Y         
Sbjct: 1   TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGL--NLWDE 58

Query: 76  KWIGHPRFELIRHDVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTN 124
             +   R +++  D+++P L            EVD I H    A+ + + Y   +    N
Sbjct: 59  LEL--SRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIH--NGAN-VNWVYPYEELKPAN 113

Query: 125 VIGTLNMLGLA 135
           V+GT  +L LA
Sbjct: 114 VLGTKELLKLA 124

This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290

>gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 20/127 (15%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW-IGHPRFELIRHDVTEP 93
           IL+ G  GFIG  L  +L+  + +EV ++       ++  R          ++  D+ + 
Sbjct: 1   ILILGATGFIGRALARELL-EQGHEVTLLV------RNTKRLSKEDQEPVAVVEGDLRDL 53

Query: 94  LLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST 147
             +      VD + HLA   +P   +       + +V GT N+L  AK  G    +  S+
Sbjct: 54  DSLSDAVQGVDVVIHLA--GAPRDTRDF----CEVDVEGTRNVLEAAKEAGVKHFIFISS 107

Query: 148 SEVYGDP 154
              YGD 
Sbjct: 108 LGAYGDL 114

Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176

>gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 40/152 (26%), Positives = 64/152 (42%), Gaps = 34/152 (22%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKN-EVIVV----DNYFTGSKD--NLRKWIGHPRFEL 85
             +L+TG  GF+G  L++KL+ +  +   I +     +  +  +    L K     R   
Sbjct: 1   KSVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGRN 60

Query: 86  -----------IRHDVTEP-----------LLIEVDQIYHLACPASPIFYKYNPVKTIKT 123
                      I  D++EP           L+ EV+ I H A  A+  F +    + +  
Sbjct: 61  LNPLFESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCA--ATVTFDERLD-EALSI 117

Query: 124 NVIGTLNMLGLAKRV--GARILLTSTSEVYGD 153
           NV+GTL +L LAKR       +  ST+ V GD
Sbjct: 118 NVLGTLRLLELAKRCKKLKAFVHVSTAYVNGD 149

SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320

>gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 30/149 (20%), Positives = 55/149 (36%), Gaps = 28/149 (18%)

Query: 33  MRILVTGGAGFIGSHLVDKLMEN----------EKNE----------VIVVDNYFTGSKD 72
             +L+TG  GF+G++L+ +L++            +++            +  ++   S D
Sbjct: 1   RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSAD 60

Query: 73  NLRKWIGH---PRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTL 129
            +    G    P   L      E L   VD I H    A+ + + +   +    NV+GT 
Sbjct: 61  RVEVVAGDLAEPDLGLSERTWQE-LAENVDLIIH---NAALVNHVFPYSELRGANVLGTA 116

Query: 130 NMLGLAKRVGARIL-LTSTSEVYGDPLVH 157
            +L LA     + L   S+  V       
Sbjct: 117 EVLRLAATGKPKPLHYVSSISVGETEYYS 145

Length = 382

>gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65
          M+ILVTG  GF+G  +V +L+   +   +    
Sbjct: 1  MKILVTGATGFVGGAVVRELL--ARGHEVRAAV 31

Length = 275

>gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 37/132 (28%), Positives = 52/132 (39%), Gaps = 37/132 (28%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           +IL+TG  G +G  LV  L E    EVI                 G  R  L + D+T+P
Sbjct: 1   KILITGATGMLGRALVRLLKERGY-EVIG---------------TGRSRASLFKLDLTDP 44

Query: 94  L-LIEV------DQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
             + E       D I + A       C + P           + NV+   N+   AK VG
Sbjct: 45  DAVEEAIRDYKPDVIINCAAYTRVDKCESDPE-------LAYRVNVLAPENLARAAKEVG 97

Query: 140 ARILLTSTSEVY 151
           AR++  ST  V+
Sbjct: 98  ARLIHISTDYVF 109

dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280

>gnl|CDD|187535 cd02266, SDR, Short-chain dehydrogenases/reductases (SDR)

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 33/124 (26%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           +LVTGG+G IG  +   L      +V+VV                  R +++ H+     
Sbjct: 1   VLVTGGSGGIGGAIARWLASRGSPKVLVVS-----------------RRDVVVHNAAILD 43

Query: 95  LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK-----RVGARILLTSTSE 149
              +  +                 + I+ NV+GT  +L  A+     +   R +L S+  
Sbjct: 44  DGRLIDL-----------TGSRIERAIRANVVGTRRLLEAARELMKAKRLGRFILISSVA 92

Query: 150 VYGD 153
               
Sbjct: 93  GLFG 96

SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase (KR) domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 186

>gnl|CDD|233427 TIGR01472, gmd, GDP-mannose 4,6-dehydratase

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 23/96 (23%)

Query: 73  NLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNML 132
           NLR+ I          D  +P      +IY+LA  +        P  T   + IGTL +L
Sbjct: 69  NLRRII----------DEIKP-----TEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLL 113

Query: 133 ------GLAKRVGARILLTSTSEVYGDPLVHPQDES 162
                 GL K V  +    STSE+YG     PQ+E+
Sbjct: 114 EAVRTLGLIKSV--KFYQASTSELYGKVQEIPQNET 147

Alternate name: GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of E. coli. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 343

>gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs

 Score = 41.6 bits (98), Expect = 1e-04
 Identities = 41/158 (25%), Positives = 55/158 (34%), Gaps = 43/158 (27%)

Query: 33  MRILVTGGAGFIG----SHLVDKLMENEKNEVIVVDNYFTGSKDN--------------- 73
           M++L+ GG G+ G     HL  +      +EV +VDN      D                
Sbjct: 1   MKVLILGGDGYCGWPTALHLSKR-----GHEVCIVDNLVRRRIDVELGLESLTPIASIHE 55

Query: 74  -LRKW---IGHPRFELIRHDVTEPLL-------IEVDQIYHLA----CPASPIFYKYNPV 118
            LR W    G    E    D  +           E D + H A     P S I  + +  
Sbjct: 56  RLRAWKELTGK-TIEFYVGDACDYEFLAELLASHEPDAVVHFAEQRSAPYSMI-DREHAN 113

Query: 119 KTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDP 154
            T   NVIGTLN+L   K       ++   T   YG P
Sbjct: 114 YTQHNNVIGTLNLLFAIKEFDPDCHLVKLGTMGEYGTP 151

Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382

>gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 10/75 (13%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP- 93
           +LVTG  G++G  LV +L++ E ++V         S + L       R  ++R D+ +P 
Sbjct: 1   VLVTGATGYVGGRLVPRLLQ-EGHQVRA----LVRSPEKLADRPWSERVTVVRGDLEDPE 55

Query: 94  ----LLIEVDQIYHL 104
                L  +D  Y+L
Sbjct: 56  SLRAALEGIDTAYYL 70

This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 29/132 (21%), Positives = 49/132 (37%), Gaps = 21/132 (15%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
             V G +G IG  +  + +     +V +V         +  K    P  E++  D  +  
Sbjct: 2   AHVLGASGPIGREVA-RELRRRGWDVRLVSR-------SGSKLAWLPGVEIVAADAMDAS 53

Query: 95  LIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE 149
            +       D IYH A PA   + +  P   +  NV+        A+  GA+++L     
Sbjct: 54  SVIAAARGADVIYHCANPAYTRWEELFP--PLMENVVAA------AEANGAKLVLPGNVY 105

Query: 150 VYGDPLVHPQDE 161
           +YG     P  E
Sbjct: 106 MYGPQAGSPITE 117

These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302

>gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 33 MRILVTGGAGFIGSHLVDKLMEN 55
          M++ VTG  GFIGS +V +L+  
Sbjct: 1  MKVFVTGATGFIGSAVVRELVAA 23

This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291

>gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase

 Score = 38.3 bits (89), Expect = 0.001
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD 64
             +RI +TG  GFI SH+  +L   E + +I  D
Sbjct: 19 SEKLRICITGAGGFIASHIARRLKA-EGHYIIASD 52

Length = 370

>gnl|CDD|187571 cd05261, CAPF_like_SDR_e, capsular polysaccharide assembling protein (CAPF) like, extended (e) SDRs

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 25/123 (20%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M+IL+TG  GFIG +L+ +L E + +++   D                   EL      +
Sbjct: 1   MKILITGAKGFIGKNLIARLKEQKDDDIFFYD-------------RESDESEL------D 41

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR--ILLTSTSEV 150
             L   D I+HLA    P     +  +    NV  T  +L    R G +  ILL+S+ + 
Sbjct: 42  DFLQGADFIFHLAGVNRP----KDEAEFESGNVGLTERLLDALTRNGKKPPILLSSSIQA 97

Query: 151 YGD 153
             D
Sbjct: 98  ALD 100

This subgroup of extended SDRs, includes some members which have been identified as capsular polysaccharide assembling proteins, such as Staphylococcus aureus Cap5F which is involved in the biosynthesis of N-acetyl-l-fucosamine, a constituent of surface polysaccharide structures of S. aureus. This subgroup has the characteristic active site tetrad and NAD-binding motif of extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 248

>gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain

 Score = 36.8 bits (86), Expect = 0.004
 Identities = 35/164 (21%), Positives = 53/164 (32%), Gaps = 44/164 (26%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           ILVTG  G +G  L   L   E+   +V               +  P  +L   +    L
Sbjct: 1   ILVTGANGQLGRELTRLL--AERGVEVVA--------------LDRPELDLTDPEAVAAL 44

Query: 95  LIEV--DQIYHLACPASPIFY------KYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
           + E   D + + A       Y      +  P      N +G  N+       GA ++  S
Sbjct: 45  VREARPDVVVNAA------AYTAVDKAESEPELAYAVNALGPGNLAEACAARGAPLIHIS 98

Query: 147 TSEVY-GDPLV--HPQDESYWGNVNPIGMFSFVLKDGIMKLIGE 187
           T  V+ G         D        P+ ++      G  KL GE
Sbjct: 99  TDYVFDGAKGGPYREDDP-----TGPLNVY------GRTKLAGE 131

L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	190
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	99.95
PLN02166	436	dTDP-glucose 4,6-dehydratase	99.93
PLN02206	442	UDP-glucuronate decarboxylase	99.93
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	99.92
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	99.91
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	99.9
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	99.9
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	99.89
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	99.89
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	99.89
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.88
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	99.88
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	99.88
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	99.88
PLN02427	386	UDP-apiose/xylose synthase	99.88
PLN02240	352	UDP-glucose 4-epimerase	99.87
PLN02653	340	GDP-mannose 4,6-dehydratase	99.87
PLN02214	342	cinnamoyl-CoA reductase	99.87
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	99.87
PLN02572	442	UDP-sulfoquinovose synthase	99.86
PLN02896	353	cinnamyl-alcohol dehydrogenase	99.86
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	99.86
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	99.86
PLN00198	338	anthocyanidin reductase; Provisional	99.85
PRK10675	338	UDP-galactose-4-epimerase; Provisional	99.85
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	99.85
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	99.84
PLN02778	298	3,5-epimerase/4-reductase	99.84
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	99.84
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	99.83
PLN02260	668	probable rhamnose biosynthetic enzyme	99.83
PLN02650	351	dihydroflavonol-4-reductase	99.83
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	99.83
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	99.83
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	99.83
PLN02695	370	GDP-D-mannose-3',5'-epimerase	99.82
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	99.82
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	99.82
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	99.82
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	99.81
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	99.81
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	99.8
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	99.79
PLN02686	367	cinnamoyl-CoA reductase	99.79
PLN02583	297	cinnamoyl-CoA reductase	99.78
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.78
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	99.77
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	99.77
PLN02996	491	fatty acyl-CoA reductase	99.77
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.76
PRK07201	657	short chain dehydrogenase; Provisional	99.75
PLN02260	668	probable rhamnose biosynthetic enzyme	99.74
TIGR01746	367	Thioester-redct thioester reductase domain. It has	99.74
COG3320	382	Putative dehydrogenase domain of multifunctional n	99.73
KOG0747	331	consensus Putative NAD+-dependent epimerases [Carb	99.72
PRK06197	306	short chain dehydrogenase; Provisional	99.72
PRK05854	313	short chain dehydrogenase; Provisional	99.71
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	99.71
PRK07453	322	protochlorophyllide oxidoreductase; Validated	99.7
PLN02503	605	fatty acyl-CoA reductase 2	99.69
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.68
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	99.68
PRK05717	255	oxidoreductase; Validated	99.67
PRK07774	250	short chain dehydrogenase; Provisional	99.67
PRK06196	315	oxidoreductase; Provisional	99.67
PRK06194	287	hypothetical protein; Provisional	99.67
PRK06482	276	short chain dehydrogenase; Provisional	99.66
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	99.66
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.65
PLN02253	280	xanthoxin dehydrogenase	99.65
CHL00194	317	ycf39 Ycf39; Provisional	99.65
COG0300	265	DltE Short-chain dehydrogenases of various substra	99.64
PRK06180	277	short chain dehydrogenase; Provisional	99.64
PRK09186	256	flagellin modification protein A; Provisional	99.64
PRK08213	259	gluconate 5-dehydrogenase; Provisional	99.64
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	99.64
PRK07806	248	short chain dehydrogenase; Provisional	99.64
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	99.64
PRK08263	275	short chain dehydrogenase; Provisional	99.63
PLN03209	576	translocon at the inner envelope of chloroplast su	99.63
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	99.63
PRK07024	257	short chain dehydrogenase; Provisional	99.63
PRK07890	258	short chain dehydrogenase; Provisional	99.63
PRK12827	249	short chain dehydrogenase; Provisional	99.63
PRK07814	263	short chain dehydrogenase; Provisional	99.62
PRK05866	293	short chain dehydrogenase; Provisional	99.62
PRK12746	254	short chain dehydrogenase; Provisional	99.62
PRK06138	252	short chain dehydrogenase; Provisional	99.62
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.61
PRK07523	255	gluconate 5-dehydrogenase; Provisional	99.61
PRK05993	277	short chain dehydrogenase; Provisional	99.61
PRK06179	270	short chain dehydrogenase; Provisional	99.61
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	99.6
PRK08267	260	short chain dehydrogenase; Provisional	99.6
PRK06914	280	short chain dehydrogenase; Provisional	99.6
PLN00016	378	RNA-binding protein; Provisional	99.6
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	99.6
PRK06128	300	oxidoreductase; Provisional	99.6
PRK09135	249	pteridine reductase; Provisional	99.59
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	99.59
PRK06182	273	short chain dehydrogenase; Validated	99.59
KOG1208	314	consensus Dehydrogenases with different specificit	99.59
PRK07063	260	short chain dehydrogenase; Provisional	99.59
PRK06500	249	short chain dehydrogenase; Provisional	99.59
PRK07478	254	short chain dehydrogenase; Provisional	99.59
PRK05876	275	short chain dehydrogenase; Provisional	99.59
PRK06398	258	aldose dehydrogenase; Validated	99.59
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.58
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	99.58
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.58
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.58
PRK10538	248	malonic semialdehyde reductase; Provisional	99.58
PRK08589	272	short chain dehydrogenase; Validated	99.58
PRK06523	260	short chain dehydrogenase; Provisional	99.58
PRK08277	278	D-mannonate oxidoreductase; Provisional	99.58
PRK08251	248	short chain dehydrogenase; Provisional	99.58
PRK07985	294	oxidoreductase; Provisional	99.57
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	99.57
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	99.57
PRK08643	256	acetoin reductase; Validated	99.57
PRK05872	296	short chain dehydrogenase; Provisional	99.57
PRK07326	237	short chain dehydrogenase; Provisional	99.57
PRK05875	276	short chain dehydrogenase; Provisional	99.57
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	99.57
PRK07035	252	short chain dehydrogenase; Provisional	99.57
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.57
PRK07775	274	short chain dehydrogenase; Provisional	99.56
PRK06181	263	short chain dehydrogenase; Provisional	99.56
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	99.56
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.56
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	99.56
PRK07856	252	short chain dehydrogenase; Provisional	99.56
PRK08339	263	short chain dehydrogenase; Provisional	99.56
PRK08264	238	short chain dehydrogenase; Validated	99.56
PRK06701	290	short chain dehydrogenase; Provisional	99.56
PRK08265	261	short chain dehydrogenase; Provisional	99.56
PRK07067	257	sorbitol dehydrogenase; Provisional	99.56
PRK08219	227	short chain dehydrogenase; Provisional	99.56
PRK12935	247	acetoacetyl-CoA reductase; Provisional	99.55
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	99.55
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.55
PRK07102	243	short chain dehydrogenase; Provisional	99.55
PRK08628	258	short chain dehydrogenase; Provisional	99.55
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.55
PRK06841	255	short chain dehydrogenase; Provisional	99.55
PRK12742	237	oxidoreductase; Provisional	99.55
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.55
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	99.55
PRK07825	273	short chain dehydrogenase; Provisional	99.55
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.54
PRK09134	258	short chain dehydrogenase; Provisional	99.54
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	99.54
PRK09242	257	tropinone reductase; Provisional	99.54
PRK07454	241	short chain dehydrogenase; Provisional	99.54
PRK12747	252	short chain dehydrogenase; Provisional	99.54
PRK07577	234	short chain dehydrogenase; Provisional	99.54
PRK07097	265	gluconate 5-dehydrogenase; Provisional	99.54
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	99.54
PRK09291	257	short chain dehydrogenase; Provisional	99.54
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	99.54
PRK08085	254	gluconate 5-dehydrogenase; Provisional	99.54
PRK12829	264	short chain dehydrogenase; Provisional	99.54
PRK05650	270	short chain dehydrogenase; Provisional	99.54
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	99.54
PRK08226	263	short chain dehydrogenase; Provisional	99.54
PRK12937	245	short chain dehydrogenase; Provisional	99.54
PRK07904	253	short chain dehydrogenase; Provisional	99.54
PRK12939	250	short chain dehydrogenase; Provisional	99.54
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.53
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	99.53
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.53
PRK07677	252	short chain dehydrogenase; Provisional	99.53
PLN02780	320	ketoreductase/ oxidoreductase	99.53
PRK08278	273	short chain dehydrogenase; Provisional	99.53
PRK06172	253	short chain dehydrogenase; Provisional	99.53
PRK12828	239	short chain dehydrogenase; Provisional	99.53
PRK06114	254	short chain dehydrogenase; Provisional	99.52
PRK07074	257	short chain dehydrogenase; Provisional	99.52
PRK07576	264	short chain dehydrogenase; Provisional	99.52
PRK06124	256	gluconate 5-dehydrogenase; Provisional	99.52
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	99.52
PRK12367	245	short chain dehydrogenase; Provisional	99.52
PRK07060	245	short chain dehydrogenase; Provisional	99.52
PRK12743	256	oxidoreductase; Provisional	99.52
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	99.52
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.52
PRK12320	699	hypothetical protein; Provisional	99.52
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.51
PRK05867	253	short chain dehydrogenase; Provisional	99.51
PRK06123	248	short chain dehydrogenase; Provisional	99.51
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.51
KOG2774	366	consensus NAD dependent epimerase [General functio	99.51
PRK09072	263	short chain dehydrogenase; Provisional	99.51
PRK12744	257	short chain dehydrogenase; Provisional	99.51
PRK07109	334	short chain dehydrogenase; Provisional	99.51
PRK08936	261	glucose-1-dehydrogenase; Provisional	99.5
PRK08703	239	short chain dehydrogenase; Provisional	99.5
PRK06057	255	short chain dehydrogenase; Provisional	99.5
PRK06483	236	dihydromonapterin reductase; Provisional	99.5
PRK06949	258	short chain dehydrogenase; Provisional	99.5
PRK07062	265	short chain dehydrogenase; Provisional	99.5
PRK07023	243	short chain dehydrogenase; Provisional	99.5
PRK06101	240	short chain dehydrogenase; Provisional	99.5
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	99.5
PRK05693	274	short chain dehydrogenase; Provisional	99.5
PRK12824	245	acetoacetyl-CoA reductase; Provisional	99.5
PRK06947	248	glucose-1-dehydrogenase; Provisional	99.5
PRK07791	286	short chain dehydrogenase; Provisional	99.5
TIGR02415	254	23BDH acetoin reductases. One member of this famil	99.5
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.49
PRK12938	246	acetyacetyl-CoA reductase; Provisional	99.49
PRK08340	259	glucose-1-dehydrogenase; Provisional	99.49
PRK05855	582	short chain dehydrogenase; Validated	99.49
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	99.49
PRK06139	330	short chain dehydrogenase; Provisional	99.49
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.48
PRK07041	230	short chain dehydrogenase; Provisional	99.48
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	99.48
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	99.48
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	99.48
PRK06940	275	short chain dehydrogenase; Provisional	99.47
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	99.47
KOG2865	391	consensus NADH:ubiquinone oxidoreductase, NDUFA9/3	99.46
PRK06484	520	short chain dehydrogenase; Validated	99.46
PRK07831	262	short chain dehydrogenase; Provisional	99.46
PRK07201	657	short chain dehydrogenase; Provisional	99.46
PRK08017	256	oxidoreductase; Provisional	99.45
PRK07069	251	short chain dehydrogenase; Validated	99.45
PRK06198	260	short chain dehydrogenase; Provisional	99.45
PRK05865	854	hypothetical protein; Provisional	99.45
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	99.44
PRK08177	225	short chain dehydrogenase; Provisional	99.44
PRK08324	681	short chain dehydrogenase; Validated	99.44
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	99.43
PRK06953	222	short chain dehydrogenase; Provisional	99.43
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	99.43
PRK06125	259	short chain dehydrogenase; Provisional	99.43
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	99.43
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.43
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.43
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	99.43
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	99.42
PRK05884	223	short chain dehydrogenase; Provisional	99.42
PRK06924	251	short chain dehydrogenase; Provisional	99.42
PLN00015	308	protochlorophyllide reductase	99.42
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	99.42
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	99.42
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	99.42
PRK07832	272	short chain dehydrogenase; Provisional	99.42
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	99.41
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.41
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	99.41
PRK06484	520	short chain dehydrogenase; Validated	99.4
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	99.4
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.4
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	99.39
PRK08303	305	short chain dehydrogenase; Provisional	99.38
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.37
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.36
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.36
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.35
PRK05599	246	hypothetical protein; Provisional	99.35
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	99.34
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	99.34
PRK07578	199	short chain dehydrogenase; Provisional	99.34
KOG0725	270	consensus Reductases with broad range of substrate	99.34
PRK09009	235	C factor cell-cell signaling protein; Provisional	99.33
COG1028	251	FabG Dehydrogenases with different specificities (	99.33
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	99.33
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	99.3
PRK08862	227	short chain dehydrogenase; Provisional	99.29
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	99.28
KOG1431	315	consensus GDP-L-fucose synthetase [Carbohydrate tr	99.27
KOG1372	376	consensus GDP-mannose 4,6 dehydratase [Carbohydrat	99.25
KOG1611	249	consensus Predicted short chain-type dehydrogenase	99.23
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	99.23
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	99.22
COG2910	211	Putative NADH-flavin reductase [General function p	99.13
PRK06720	169	hypothetical protein; Provisional	99.12
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.12
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	99.02
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	99.0
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	98.95
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	98.94
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	98.93
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	98.91
PTZ00325	321	malate dehydrogenase; Provisional	98.87
PRK08309	177	short chain dehydrogenase; Provisional	98.86
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	98.86
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	98.85
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	98.83
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	98.79
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	98.68
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	98.68
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	98.61
PLN00106	323	malate dehydrogenase	98.55
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.55
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	98.46
KOG1478	341	consensus 3-keto sterol reductase [Lipid transport	98.44
PRK09620	229	hypothetical protein; Provisional	98.43
PRK05086	312	malate dehydrogenase; Provisional	98.42
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.35
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.35
KOG1204	253	consensus Predicted dehydrogenase [Secondary metab	98.29
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	98.2
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	98.18
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	98.17
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	98.17
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.15
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.12
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	98.04
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	98.02
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	98.02
PRK14982	340	acyl-ACP reductase; Provisional	97.99
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.99
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	97.98
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.94
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	97.94
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	97.93
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.91
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	97.89
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.83
KOG2733	423	consensus Uncharacterized membrane protein [Functi	97.82
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.79
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.78
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	97.76
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.71
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.71
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.66
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.65
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.63
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.62
PLN02383	344	aspartate semialdehyde dehydrogenase	97.61
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.56
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.54
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	97.54
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	97.51
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.5
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	97.49
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.48
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.47
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.46
KOG4288	283	consensus Predicted oxidoreductase [General functi	97.45
PRK06223	307	malate dehydrogenase; Reviewed	97.45
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.45
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.44
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.44
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	97.41
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	97.41
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.39
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.39
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	97.39
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.38
PRK05442	326	malate dehydrogenase; Provisional	97.37
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	97.36
PLN02602	350	lactate dehydrogenase	97.36
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	97.34
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	97.3
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.29
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	97.28
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.27
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.26
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.24
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.24
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.23
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.22
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	97.21
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	97.2
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.19
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.19
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	97.17
PTZ00117	319	malate dehydrogenase; Provisional	97.17
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	97.17
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.16
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	97.13
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.12
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	97.09
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.07
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.05
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	97.02
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.02
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.02
PRK08328	231	hypothetical protein; Provisional	96.99
COG3268	382	Uncharacterized conserved protein [Function unknow	96.98
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	96.96
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.96
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.95
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.92
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.89
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.88
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.86
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	96.83
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.81
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.78
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	96.77
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	96.77
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	96.76
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.75
PRK04148	134	hypothetical protein; Provisional	96.73
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.71
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.71
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	96.69
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.68
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.66
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.61
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	96.61
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.6
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.58
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.56
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.55
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	96.54
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.54
PRK08223	287	hypothetical protein; Validated	96.52
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	96.51
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.5
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.49
PRK07411	390	hypothetical protein; Validated	96.47
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.46
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.45
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.43
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	96.42
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.42
PRK09496	453	trkA potassium transporter peripheral membrane com	96.39
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.36
TIGR01408	1008	Ube1 ubiquitin-activating enzyme E1. This model re	96.32
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.27
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.26
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	96.24
PRK08655	437	prephenate dehydrogenase; Provisional	96.12
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.12
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.11
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.11
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.07
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.04
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	96.04
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.01
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	96.0
PLN00203	519	glutamyl-tRNA reductase	95.95
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.95
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.94
TIGR00036	266	dapB dihydrodipicolinate reductase.	95.9
PRK13303	265	L-aspartate dehydrogenase; Provisional	95.85
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.84
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.84
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.83
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	95.8
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	95.79
cd01493	425	APPBP1_RUB Ubiquitin activating enzyme (E1) subuni	95.76
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	95.75
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.74
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.72
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	95.71
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.65
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.62
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.57
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	95.49
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.47
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.41
PRK08291	330	ectoine utilization protein EutC; Validated	95.36
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	95.35
KOG3019	315	consensus Predicted nucleoside-diphosphate sugar e	95.34
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	95.32
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.31
PRK07417	279	arogenate dehydrogenase; Reviewed	95.26
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	95.26
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	95.25
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.24
PRK13304	265	L-aspartate dehydrogenase; Reviewed	95.24
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.18
PRK08818	370	prephenate dehydrogenase; Provisional	95.18
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	95.18
PRK08618	325	ornithine cyclodeaminase; Validated	95.16
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	95.16
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.13
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.12
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.1
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	95.09
PLN02494	477	adenosylhomocysteinase	95.07
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	95.07
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	95.07
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	95.06
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.05
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.97
PRK14851	679	hypothetical protein; Provisional	94.97
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	94.97
PRK09496	453	trkA potassium transporter peripheral membrane com	94.97
PRK14852	989	hypothetical protein; Provisional	94.96
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.94
PRK13243	333	glyoxylate reductase; Reviewed	94.94
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	94.93
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	94.93
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	94.89
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.88
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	94.85
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.84
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.83
PTZ00075	476	Adenosylhomocysteinase; Provisional	94.77
COG2130	340	Putative NADP-dependent oxidoreductases [General f	94.77
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	94.75
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	94.75

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=99.95  E-value=6.3e-27  Score=179.99  Aligned_cols=144  Identities=37%  Similarity=0.590  Sum_probs=127.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEEEcc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~~a  105 (190)
                      |+||||||+||||++.+..|++. |++|.+++.-.......+...    ...++++|+.|.+.       .++|.|||+|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~-G~~vvV~DNL~~g~~~~v~~~----~~~f~~gDi~D~~~L~~vf~~~~idaViHFA   75 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKT-GHEVVVLDNLSNGHKIALLKL----QFKFYEGDLLDRALLTAVFEENKIDAVVHFA   75 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHC-CCeEEEEecCCCCCHHHhhhc----cCceEEeccccHHHHHHHHHhcCCCEEEECc
Confidence            67999999999999999999998 999999988777666555432    26899999999754       3699999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHH
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKL  184 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~  184 (190)
                      |...+..+-+.|.++|+.|+.+|.+|+++|++.++ ++||-||+.+||.+...|++|+     .|..+.++|   |.||+
T Consensus        76 a~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~-----~~~~p~NPY---G~sKl  147 (329)
T COG1087          76 ASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISET-----SPLAPINPY---GRSKL  147 (329)
T ss_pred             cccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCC-----CCCCCCCcc---hhHHH
Confidence            98888888899999999999999999999999998 8999999999999999999999     677788999   88899


Q ss_pred             hhhhc
Q 029656          185 IGELG  189 (190)
Q Consensus       185 ~~E~~  189 (190)
                      ..|+.
T Consensus       148 m~E~i  152 (329)
T COG1087         148 MSEEI  152 (329)
T ss_pred             HHHHH
Confidence            99973

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=99.93  E-value=5.3e-25  Score=182.73  Aligned_cols=154  Identities=74%  Similarity=1.184  Sum_probs=124.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP  110 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~  110 (190)
                      ..|+|+||||+||||++|++.|+++ |++|++++|...........+.....++++..|+.+....++|+|||+|+...+
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~-G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~D~ViHlAa~~~~  197 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGR-GDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIYHLACPASP  197 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCCCccHhHhhhhccCCceEEEECccccccccCCCEEEECceeccc
Confidence            3489999999999999999999999 899999987643322222222223468889999998888899999999987665


Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhhhh
Q 029656          111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      ..+..++.+.+++|+.++.+++++|++.+.++||+||.++||.....+.+|+.|...+|..+.+.|   +.+|+.+|+
T Consensus       198 ~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Y---g~SK~~aE~  272 (436)
T PLN02166        198 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCY---DEGKRTAET  272 (436)
T ss_pred             hhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhCCCCCCCCCccccccCCCCCCCCch---HHHHHHHHH
Confidence            444556788899999999999999999888999999999999776667888866555666666778   888999986

>PLN02206 UDP-glucuronate decarboxylase

Probab=99.93  E-value=6.4e-25  Score=182.50  Aligned_cols=154  Identities=71%  Similarity=1.150  Sum_probs=124.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP  110 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~  110 (190)
                      ++|+|+||||+||||++|++.|+++ |++|++++|................+++++..|+.+..+.++|+|||+|+...+
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~-G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~ViHlAa~~~~  196 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMAR-GDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIYHLACPASP  196 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHC-cCEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEEEeeeecch
Confidence            4589999999999999999999999 899999877533322222222234578889999999888899999999987665


Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhhhh
Q 029656          111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      .....++.+.+++|+.++.+++++|++.++|+||+||..+|+.....+.+|+.|...+|..+.+.|   +.+|..+|+
T Consensus       197 ~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y---~~SK~~aE~  271 (442)
T PLN02206        197 VHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCY---DEGKRTAET  271 (442)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhCCCCCCCCCccccccCCCCCccchH---HHHHHHHHH
Confidence            444557788999999999999999999988999999999999776667888866555565555677   888999986

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=99.92  E-value=6.9e-24  Score=171.80  Aligned_cols=150  Identities=32%  Similarity=0.374  Sum_probs=117.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh------cCCceEEEeccccccc-----cCCc
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI------GHPRFELIRHDVTEPL-----LIEV   98 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~-----~~~~   98 (190)
                      +.+|+|+||||+||||++|++.|+++ +++|++++|........+....      ...++.++.+|+.|..     +.++
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~   91 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFL-NQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV   91 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence            46799999999999999999999999 7999999886543322222111      1135788999999864     3579


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchh
Q 029656           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVL  177 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~  177 (190)
                      |+|||+|+......+..++...+++|+.++.+++++|++.++ ++||+||..+||.....+..|+     .+..+.+.| 
T Consensus        92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~-----~~~~p~~~Y-  165 (348)
T PRK15181         92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEE-----RIGRPLSPY-  165 (348)
T ss_pred             CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCC-----CCCCCCChh-
Confidence            999999997655445566778899999999999999999987 8999999999997555566666     344455677 


Q ss_pred             hhhHHHHhhhh
Q 029656          178 KDGIMKLIGEL  188 (190)
Q Consensus       178 ~~~~sK~~~E~  188 (190)
                        +.||..+|+
T Consensus       166 --~~sK~~~e~  174 (348)
T PRK15181        166 --AVTKYVNEL  174 (348)
T ss_pred             --hHHHHHHHH
Confidence              888999986

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=99.91  E-value=1e-23  Score=165.69  Aligned_cols=155  Identities=25%  Similarity=0.316  Sum_probs=121.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh--hhhhhhc-CCceEEEeccccccc-----cCCcCEEE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD--NLRKWIG-HPRFELIRHDVTEPL-----LIEVDQIY  102 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~--~~~~~~~-~~~~~~~~~D~~~~~-----~~~~d~vi  102 (190)
                      .+++|+||||+||||+|+++.|+++ |+.|.++.|++++...  ++.++.. ..+...+..|+.|+.     ..+||+||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~r-GY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVf   83 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSR-GYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVF   83 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhC-CCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEE
Confidence            5689999999999999999999999 9999999998877443  3544432 346899999999874     46899999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecceecCCC-----CCCCCCCCCccCCCCCCcccc
Q 029656          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDP-----LVHPQDESYWGNVNPIGMFSF  175 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~~~~~~-----~~~~~~e~~~~~~~~~~~~~~  175 (190)
                      |.|.+....... ...+.++..+.|+.|++++|++.+ + |+|++||+.+...+     ....++|+.|.+.+-..... 
T Consensus        84 H~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~-  161 (327)
T KOG1502|consen   84 HTASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKK-  161 (327)
T ss_pred             EeCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhH-
Confidence            999877654322 344789999999999999999998 5 99999998854422     34578999886655443322 


Q ss_pred             hhhhhHHHHhhhhc
Q 029656          176 VLKDGIMKLIGELG  189 (190)
Q Consensus       176 y~~~~~sK~~~E~~  189 (190)
                       .+|..||.++|+.
T Consensus       162 -~~Y~~sK~lAEka  174 (327)
T KOG1502|consen  162 -LWYALSKTLAEKA  174 (327)
T ss_pred             -HHHHHHHHHHHHH
Confidence             3348889999974

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=99.90  E-value=2.3e-23  Score=165.51  Aligned_cols=130  Identities=25%  Similarity=0.213  Sum_probs=107.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEEEcc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~~a  105 (190)
                      |+||||||+||||+++++.|+++ | +|++++|...                .+.+|+.|.+.       .++|+|||+|
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~-g-~V~~~~~~~~----------------~~~~Dl~d~~~~~~~~~~~~~D~Vih~A   62 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPL-G-NLIALDVHST----------------DYCGDFSNPEGVAETVRKIRPDVIVNAA   62 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhcc-C-CEEEeccccc----------------cccCCCCCHHHHHHHHHhcCCCEEEECC
Confidence            57999999999999999999998 5 6888877421                23468877532       2589999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHh
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      +...+..++.+++..+.+|+.++.+++++|++.+.++||+||.++|+.....+++|+     ++..|.+.|   +.+|+.
T Consensus        63 a~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy~~~~~~p~~E~-----~~~~P~~~Y---g~sK~~  134 (299)
T PRK09987         63 AHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYSTDYVFPGTGDIPWQET-----DATAPLNVY---GETKLA  134 (299)
T ss_pred             ccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEccceEECCCCCCCcCCC-----CCCCCCCHH---HHHHHH
Confidence            988776667778888999999999999999999999999999999987666678888     456666778   888999


Q ss_pred             hhh
Q 029656          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      +|+
T Consensus       135 ~E~  137 (299)
T PRK09987        135 GEK  137 (299)
T ss_pred             HHH
Confidence            997

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=99.90  E-value=3.6e-23  Score=157.75  Aligned_cols=155  Identities=77%  Similarity=1.202  Sum_probs=142.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      ..+++|+||||+||||++|++.|+.+ |++|++++....+....+..+.....++.+..|+..+.+..+|.|+|+|++..
T Consensus        25 ~~~lrI~itGgaGFIgSHLvdkLm~e-gh~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~pl~~evD~IyhLAapas  103 (350)
T KOG1429|consen   25 SQNLRILITGGAGFIGSHLVDKLMTE-GHEVIALDNYFTGRKENLEHWIGHPNFELIRHDVVEPLLKEVDQIYHLAAPAS  103 (350)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHhc-CCeEEEEecccccchhhcchhccCcceeEEEeechhHHHHHhhhhhhhccCCC
Confidence            36699999999999999999999999 79999999988877777777888889999999999999999999999999998


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhhhh
Q 029656          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      +.....++-+++..|..++.+.+..|++.+.|+++.||+.|||.+..++..|++|....|..+...|   +.-|..+|-
T Consensus       104 p~~y~~npvktIktN~igtln~lglakrv~aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cy---degKr~aE~  179 (350)
T KOG1429|consen  104 PPHYKYNPVKTIKTNVIGTLNMLGLAKRVGARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCY---DEGKRVAET  179 (350)
T ss_pred             CcccccCccceeeecchhhHHHHHHHHHhCceEEEeecccccCCcccCCCccccccccCcCCchhhh---hHHHHHHHH
Confidence            8877888999999999999999999999999999999999999999999999999999999988888   555988873

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=99.89  E-value=3.1e-22  Score=161.98  Aligned_cols=150  Identities=26%  Similarity=0.350  Sum_probs=113.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccc-ccc-----cCCcCEEEEcc
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-EPL-----LIEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~-~~~-----~~~~d~vi~~a  105 (190)
                      ||+|+||||+||||++|++.|++.++++|+++.|+...    ...+.....+.++.+|+. +..     ..++|+|||+|
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~a   76 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDR----LGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLV   76 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHH----HHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECc
Confidence            47899999999999999999998746899999875422    222222346899999997 432     24799999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccC-CCCC-CcccchhhhhHHH
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-VNPI-GMFSFVLKDGIMK  183 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~-~~~~-~~~~~y~~~~~sK  183 (190)
                      +...+.....++...+++|+.++.+++++|++.+.++||+||..+||.....+++|+..+. ..+. .+.+.|   +.+|
T Consensus        77 a~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y---~~sK  153 (347)
T PRK11908         77 AIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIY---ACSK  153 (347)
T ss_pred             ccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeeccCCCcCcCccccccccCcCCCccchH---HHHH
Confidence            8766544556788889999999999999999887899999999999975555667664211 1121 234567   8889


Q ss_pred             Hhhhh
Q 029656          184 LIGEL  188 (190)
Q Consensus       184 ~~~E~  188 (190)
                      ..+|+
T Consensus       154 ~~~e~  158 (347)
T PRK11908        154 QLMDR  158 (347)
T ss_pred             HHHHH
Confidence            99885

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=99.89  E-value=2.8e-22  Score=162.00  Aligned_cols=147  Identities=27%  Similarity=0.272  Sum_probs=112.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhhc------CCceEEEecccccccc-----C--Cc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG------HPRFELIRHDVTEPLL-----I--EV   98 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~~------~~~~~~~~~D~~~~~~-----~--~~   98 (190)
                      |+|+||||+||||+++++.|++. |++|++++|+.... ...+..+..      ...+.++.+|+.|...     .  ++
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~   79 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEK-GYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKP   79 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHC-CCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCC
Confidence            58999999999999999999999 89999998875421 111222110      2358899999998642     2  47


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC----eEEEEecceecCCCCCCCCCCCCccCCCCCCccc
Q 029656           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS  174 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~  174 (190)
                      |+|||+|+......+...+...+++|+.++.+++++|++.++    ++||+||..+||.....+++|+     .+..+.+
T Consensus        80 d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~  154 (343)
T TIGR01472        80 TEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNET-----TPFYPRS  154 (343)
T ss_pred             CEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCC-----CCCCCCC
Confidence            999999997654434445667788999999999999998763    7999999999997655567777     4556667


Q ss_pred             chhhhhHHHHhhhh
Q 029656          175 FVLKDGIMKLIGEL  188 (190)
Q Consensus       175 ~y~~~~~sK~~~E~  188 (190)
                      .|   +.||..+|.
T Consensus       155 ~Y---~~sK~~~e~  165 (343)
T TIGR01472       155 PY---AAAKLYAHW  165 (343)
T ss_pred             hh---HHHHHHHHH
Confidence            78   888999985

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=99.89  E-value=4.2e-22  Score=156.75  Aligned_cols=143  Identities=36%  Similarity=0.449  Sum_probs=105.5

Q ss_pred             EEEcccchHHHHHHHHHHhcCC--CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCCC
Q 029656           36 LVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACPA  108 (190)
Q Consensus        36 lItG~~G~iG~~l~~~L~~~~~--~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~~  108 (190)
                      |||||+||||+++++.|+++ +  ++|.++++.......  ..........++++|++|..     +.++|+|||+|++.
T Consensus         1 LVTGgsGflG~~iv~~Ll~~-g~~~~Vr~~d~~~~~~~~--~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~   77 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLER-GYIYEVRVLDRSPPPKFL--KDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPV   77 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHC-CCceEEEEcccccccccc--hhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccc
Confidence            69999999999999999999 6  788888876543321  11122233448999999863     56899999999876


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCC-CCCC---CCCCccCCCCCCcccchhhhhHHH
Q 029656          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL-VHPQ---DESYWGNVNPIGMFSFVLKDGIMK  183 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~-~~~~---~e~~~~~~~~~~~~~~y~~~~~sK  183 (190)
                      ... .....+..+++|+.||.+++++|++.++ |+||+||.++++.+. ..++   +|..+   .+......|   +.||
T Consensus        78 ~~~-~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~---~~~~~~~~Y---~~SK  150 (280)
T PF01073_consen   78 PPW-GDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTP---YPSSPLDPY---AESK  150 (280)
T ss_pred             ccc-CcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCc---ccccccCch---HHHH
Confidence            543 2456778999999999999999999998 899999999888622 2222   44422   222233456   8889


Q ss_pred             Hhhhh
Q 029656          184 LIGEL  188 (190)
Q Consensus       184 ~~~E~  188 (190)
                      +.+|+
T Consensus       151 ~~AE~  155 (280)
T PF01073_consen  151 ALAEK  155 (280)
T ss_pred             HHHHH
Confidence            99997

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.88  E-value=6.2e-22  Score=172.26  Aligned_cols=156  Identities=28%  Similarity=0.422  Sum_probs=119.5

Q ss_pred             hcccccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------cCCc
Q 029656           25 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEV   98 (190)
Q Consensus        25 ~~~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~~   98 (190)
                      ++.++ .+|+|+||||+||||++|++.|+++++++|++++|......    ......+++++.+|++|..      +.++
T Consensus       309 ~~~~~-~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~----~~~~~~~~~~~~gDl~d~~~~l~~~l~~~  383 (660)
T PRK08125        309 ACSAK-RRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAIS----RFLGHPRFHFVEGDISIHSEWIEYHIKKC  383 (660)
T ss_pred             hhhhh-cCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhh----hhcCCCceEEEeccccCcHHHHHHHhcCC
Confidence            44443 67899999999999999999999865799999998653321    1222346889999998742      3479


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccC-CCCC-Ccccch
Q 029656           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN-VNPI-GMFSFV  176 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~-~~~~-~~~~~y  176 (190)
                      |+|||+|+...+..+..++...+++|+.++.+++++|++.+.++||+||.++||.....+++|+.+.. ..+. .+.+.|
T Consensus       384 D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Y  463 (660)
T PRK08125        384 DVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIY  463 (660)
T ss_pred             CEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccch
Confidence            99999999776544556677889999999999999999988899999999999976555678875321 1222 234567


Q ss_pred             hhhhHHHHhhhh
Q 029656          177 LKDGIMKLIGEL  188 (190)
Q Consensus       177 ~~~~~sK~~~E~  188 (190)
                         +.||+.+|+
T Consensus       464 ---g~sK~~~E~  472 (660)
T PRK08125        464 ---SVSKQLLDR  472 (660)
T ss_pred             ---HHHHHHHHH
Confidence               888999986

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=99.88  E-value=8.5e-23  Score=161.29  Aligned_cols=127  Identities=33%  Similarity=0.411  Sum_probs=98.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-------cCCcCEEEEcc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-------~~~~d~vi~~a  105 (190)
                      |||+|+|++|+||+++.+.|.++ +++|+.+.|.                    ..|+.|..       ..++|+|||||
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~-~~~v~~~~r~--------------------~~dl~d~~~~~~~~~~~~pd~Vin~a   59 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKER-GYEVIATSRS--------------------DLDLTDPEAVAKLLEAFKPDVVINCA   59 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTT-SEEEEEESTT--------------------CS-TTSHHHHHHHHHHH--SEEEE--
T ss_pred             CEEEEECCCCHHHHHHHHHHhhC-CCEEEEeCch--------------------hcCCCCHHHHHHHHHHhCCCeEeccc
Confidence            78999999999999999999997 7899998774                    34555542       23699999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHh
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      |...+..++.+++..+.+|+.++.+|+++|+..+.++||+||.+||+.....+++|+     ++..|.+.|   |.+|+.
T Consensus        60 a~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~~~~~y~E~-----d~~~P~~~Y---G~~K~~  131 (286)
T PF04321_consen   60 AYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGDKGGPYTED-----DPPNPLNVY---GRSKLE  131 (286)
T ss_dssp             ----HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SSTSSSB-TT-----S----SSHH---HHHHHH
T ss_pred             eeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCCcccccccC-----CCCCCCCHH---HHHHHH
Confidence            998888899999999999999999999999999999999999999988777789998     566777888   888999


Q ss_pred             hhh
Q 029656          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      +|+
T Consensus       132 ~E~  134 (286)
T PF04321_consen  132 GEQ  134 (286)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            996

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=99.88  E-value=1.3e-21  Score=158.43  Aligned_cols=150  Identities=25%  Similarity=0.282  Sum_probs=114.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEE
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIY  102 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi  102 (190)
                      +++|+|+||||+||||+++++.|+++ |++|++++|+..........+....++.++.+|+.+...       .++|+||
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi   80 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLEL-GAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVF   80 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHC-CCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEE
Confidence            46799999999999999999999999 899999988765443222222112357788899998642       2579999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecceecCCCC-CCCCCCCCccCCCCCCcccchhhh
Q 029656          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPL-VHPQDESYWGNVNPIGMFSFVLKD  179 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~~~~~~~-~~~~~e~~~~~~~~~~~~~~y~~~  179 (190)
                      |+||......+..++...+++|+.++.+++++++..+ . ++|++||..+|+... ..+++|+     .+..+.+.|   
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~-----~~~~p~~~Y---  152 (349)
T TIGR02622        81 HLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRET-----DPLGGHDPY---  152 (349)
T ss_pred             ECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccC-----CCCCCCCcc---
Confidence            9999655444556778899999999999999998876 4 899999999998643 2346666     345555677   


Q ss_pred             hHHHHhhhh
Q 029656          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      +.+|..+|.
T Consensus       153 ~~sK~~~e~  161 (349)
T TIGR02622       153 SSSKACAEL  161 (349)
T ss_pred             hhHHHHHHH
Confidence            888998875

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=99.88  E-value=4.9e-22  Score=153.94  Aligned_cols=126  Identities=29%  Similarity=0.347  Sum_probs=111.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEEEcc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~~a  105 (190)
                      |+++|||++|.+|.+|.+.|. . +.+|+.+.|..                    +|++|.+.       .++|+|||+|
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~-~~~v~a~~~~~--------------------~Ditd~~~v~~~i~~~~PDvVIn~A   58 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-G-EFEVIATDRAE--------------------LDITDPDAVLEVIRETRPDVVINAA   58 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-C-CceEEeccCcc--------------------ccccChHHHHHHHHhhCCCEEEECc
Confidence            459999999999999999998 3 68898887732                    56666542       3699999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHh
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      +.+.++.++..++..|.+|..++.+++++|++.+.++||+||.+||....+.+|.|+     ++..|.+.|   |.||++
T Consensus        59 Ayt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~-----D~~~P~nvY---G~sKl~  130 (281)
T COG1091          59 AYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKET-----DTPNPLNVY---GRSKLA  130 (281)
T ss_pred             cccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCC-----CCCCChhhh---hHHHHH
Confidence            999999999999999999999999999999999999999999999998888899999     677777888   999999


Q ss_pred             hhh
Q 029656          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      +|+
T Consensus       131 GE~  133 (281)
T COG1091         131 GEE  133 (281)
T ss_pred             HHH
Confidence            996

>PLN02427 UDP-apiose/xylose synthase

Probab=99.88  E-value=1.5e-21  Score=160.22  Aligned_cols=132  Identities=28%  Similarity=0.395  Sum_probs=98.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh--hcCCceEEEeccccccc-----cCCcCEEEE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~-----~~~~d~vi~  103 (190)
                      +.|+|+||||+||||++|++.|+++++++|++++|+...........  ....+++++.+|+.|..     +.++|+|||
T Consensus        13 ~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViH   92 (386)
T PLN02427         13 KPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTIN   92 (386)
T ss_pred             cCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEE
Confidence            45889999999999999999999985589999987643322111100  00136899999999864     346999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCC
Q 029656          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDES  162 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~  162 (190)
                      +|+...+.....++.+.+..|+.++.+++++|++.+.|+||+||.++||.....+++|+
T Consensus        93 lAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg~~~~~~~~e~  151 (386)
T PLN02427         93 LAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKD  151 (386)
T ss_pred             cccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeCCCcCCCCCcc
Confidence            99876543333455667789999999999999887779999999999997544344443

>PLN02240 UDP-glucose 4-epimerase

Probab=99.87  E-value=2.7e-21  Score=156.54  Aligned_cols=150  Identities=29%  Similarity=0.427  Sum_probs=115.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh---hhhhhhc--CCceEEEecccccccc-------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLRKWIG--HPRFELIRHDVTEPLL-------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~---~~~~~~~--~~~~~~~~~D~~~~~~-------~~   97 (190)
                      +++++|+||||+|+||+++++.|+++ +++|++++|.......   .+.....  ..++.++.+|+.+...       .+
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~-g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~   81 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLA-GYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR   81 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence            46789999999999999999999999 7899998875432221   1221111  2367889999998642       26


Q ss_pred             cCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccch
Q 029656           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFV  176 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y  176 (190)
                      +|+|||+|+..........+...+++|+.++.+++++|++.++ ++|++||+++|+.....+++|+     .+..+...|
T Consensus        82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~-----~~~~~~~~Y  156 (352)
T PLN02240         82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEE-----FPLSATNPY  156 (352)
T ss_pred             CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC-----CCCCCCCHH
Confidence            8999999986543333456778899999999999999998886 8999999999987666678887     455555667


Q ss_pred             hhhhHHHHhhhh
Q 029656          177 LKDGIMKLIGEL  188 (190)
Q Consensus       177 ~~~~~sK~~~E~  188 (190)
                         +.||+.+|+
T Consensus       157 ---~~sK~~~e~  165 (352)
T PLN02240        157 ---GRTKLFIEE  165 (352)
T ss_pred             ---HHHHHHHHH
Confidence               888999986

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=99.87  E-value=1.8e-21  Score=157.08  Aligned_cols=148  Identities=23%  Similarity=0.272  Sum_probs=114.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhh-----cCCceEEEeccccccccC-------C
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWI-----GHPRFELIRHDVTEPLLI-------E   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~-----~~~~~~~~~~D~~~~~~~-------~   97 (190)
                      ++++|+||||+||||+++++.|+++ |++|+++.|+.... ...+..+.     ...++.++.+|+.|....       +
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   83 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSK-GYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK   83 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHC-CCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence            6789999999999999999999999 89999988764321 11222211     123588999999986421       4


Q ss_pred             cCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC------eEEEEecceecCCCCCCCCCCCCccCCCCCC
Q 029656           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA------RILLTSTSEVYGDPLVHPQDESYWGNVNPIG  171 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~------~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~  171 (190)
                      +|+|||+|+......+..++...+++|+.++.+++++|.+.++      ++|++||..+||.... +++|+     .+..
T Consensus        84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~-----~~~~  157 (340)
T PLN02653         84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSET-----TPFH  157 (340)
T ss_pred             CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCC-----CCCC
Confidence            7999999997654444456677889999999999999988763      7999999999997654 67777     4566


Q ss_pred             cccchhhhhHHHHhhhh
Q 029656          172 MFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       172 ~~~~y~~~~~sK~~~E~  188 (190)
                      +.+.|   +.||..+|+
T Consensus       158 p~~~Y---~~sK~~~e~  171 (340)
T PLN02653        158 PRSPY---AVAKVAAHW  171 (340)
T ss_pred             CCChh---HHHHHHHHH
Confidence            66778   888999986

>PLN02214 cinnamoyl-CoA reductase

Probab=99.87  E-value=4.3e-21  Score=155.16  Aligned_cols=150  Identities=25%  Similarity=0.382  Sum_probs=112.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh-hhhhhhc-CCceEEEeccccccc-----cCCcCEEEE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-NLRKWIG-HPRFELIRHDVTEPL-----LIEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~-~~~~~~~-~~~~~~~~~D~~~~~-----~~~~d~vi~  103 (190)
                      ++++|+||||+||||+++++.|+++ |++|.++.|+...... .+..+.. ..++.++.+|+.+..     +.++|+|||
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih   87 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLER-GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH   87 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence            6789999999999999999999999 8999999886543221 1222211 235788899999864     346999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecc-eecCCCCC---CCCCCCCccCCC-CCCcccchh
Q 029656          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS-EVYGDPLV---HPQDESYWGNVN-PIGMFSFVL  177 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~-~~~~~~~~---~~~~e~~~~~~~-~~~~~~~y~  177 (190)
                      +|+...     .++...+++|+.++.+++++|++.++ |+|++||. .+|+....   .+++|+.|.+.. +..+.+.| 
T Consensus        88 ~A~~~~-----~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y-  161 (342)
T PLN02214         88 TASPVT-----DDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWY-  161 (342)
T ss_pred             ecCCCC-----CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHH-
Confidence            998642     35678899999999999999999887 89999996 58875332   357888764332 33344567 


Q ss_pred             hhhHHHHhhhhc
Q 029656          178 KDGIMKLIGELG  189 (190)
Q Consensus       178 ~~~~sK~~~E~~  189 (190)
                        +.||+.+|+.
T Consensus       162 --~~sK~~aE~~  171 (342)
T PLN02214        162 --CYGKMVAEQA  171 (342)
T ss_pred             --HHHHHHHHHH
Confidence              8889999863

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.87  E-value=2e-21  Score=149.28  Aligned_cols=148  Identities=32%  Similarity=0.483  Sum_probs=121.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCC-CCChhhhhhhhcCCceEEEeccccccccC-------CcCEEEE
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-------~~d~vi~  103 (190)
                      |++|||||.||||+.+++.++++.. .+|+++++-- ......+..+.+.+...++++|+.|.++.       ++|+|+|
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            5799999999999999999999843 4466665421 12234455566678999999999997542       5999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEecceecCCCCCC--CCCCCCccCCCCCCcccchhhh
Q 029656          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVH--PQDESYWGNVNPIGMFSFVLKD  179 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS~~~~~~~~~~--~~~e~~~~~~~~~~~~~~y~~~  179 (190)
                      +|+-..++.+..+|..++++|+.||.+|++++++...  |+++|||..|||.-...  .++|.     +|+.|.++|   
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~-----tp~~PsSPY---  152 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTET-----TPYNPSSPY---  152 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccC-----CCCCCCCCc---
Confidence            9999888889999999999999999999999999884  99999999999975442  57787     799999999   


Q ss_pred             hHHHHhhhh
Q 029656          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      .+||+.+++
T Consensus       153 SASKAasD~  161 (340)
T COG1088         153 SASKAASDL  161 (340)
T ss_pred             chhhhhHHH
Confidence            777988754

>PLN02572 UDP-sulfoquinovose synthase

Probab=99.86  E-value=8.1e-21  Score=158.20  Aligned_cols=154  Identities=27%  Similarity=0.351  Sum_probs=107.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh----------------hhhhhhh--cCCceEEEecccc
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------DNLRKWI--GHPRFELIRHDVT   91 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~----------------~~~~~~~--~~~~~~~~~~D~~   91 (190)
                      .++|+|+||||+||||++|++.|+++ |++|++++|......                ..+..+.  ...+++++.+|+.
T Consensus        45 ~~~k~VLVTGatGfIGs~Lv~~L~~~-G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~  123 (442)
T PLN02572         45 SKKKKVMVIGGDGYCGWATALHLSKR-GYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDIC  123 (442)
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHHC-CCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCC
Confidence            47899999999999999999999999 899999764321110                1111111  1236889999999


Q ss_pred             cccc-------CCcCEEEEccCCCCCcccccC---chhHHHHHHHHHHHHHHHHHHcCC--eEEEEecceecCCCCCCCC
Q 029656           92 EPLL-------IEVDQIYHLACPASPIFYKYN---PVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQ  159 (190)
Q Consensus        92 ~~~~-------~~~d~vi~~ag~~~~~~~~~~---~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS~~~~~~~~~~~~  159 (190)
                      |...       .++|+|||+|+......+..+   .+..+++|+.++.+++++|++.++  ++|++||..+||... .++
T Consensus       124 d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~-~~~  202 (442)
T PLN02572        124 DFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN-IDI  202 (442)
T ss_pred             CHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC-CCC
Confidence            8642       258999999976544333323   245678999999999999998874  799999999999643 233


Q ss_pred             CCCCcc---------CCCCCCcccchhhhhHHHHhhhh
Q 029656          160 DESYWG---------NVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       160 ~e~~~~---------~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      +|...+         ...+..+.+.|   +.||+.+|.
T Consensus       203 ~E~~i~~~~~~~e~~~~~~~~P~s~Y---g~SK~a~E~  237 (442)
T PLN02572        203 EEGYITITHNGRTDTLPYPKQASSFY---HLSKVHDSH  237 (442)
T ss_pred             cccccccccccccccccCCCCCCCcc---hhHHHHHHH
Confidence            433110         01244555678   888999885

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=99.86  E-value=8.1e-21  Score=154.08  Aligned_cols=154  Identities=25%  Similarity=0.245  Sum_probs=109.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEcc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~a  105 (190)
                      .+|+|+||||+||||+++++.|+++ |++|+++.|+..........+.....+.++.+|+.+..     +.++|+|||+|
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A   87 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQR-GYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA   87 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence            5689999999999999999999999 88999988865433332222222346888999999864     34699999999


Q ss_pred             CCCCCcc--cccCchhH-----HHHHHHHHHHHHHHHHHcC-C-eEEEEecceecCCCC-----CCCCCCCCccCCC---
Q 029656          106 CPASPIF--YKYNPVKT-----IKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPL-----VHPQDESYWGNVN---  168 (190)
Q Consensus       106 g~~~~~~--~~~~~~~~-----~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~~~~~~~-----~~~~~e~~~~~~~---  168 (190)
                      +......  ...+++..     ++.|+.++.+++++|++.+ + ++|++||.++|+...     ..+++|+.+.+.+   
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~~~  167 (353)
T PLN02896         88 ASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHVW  167 (353)
T ss_pred             ccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHHHhh
Confidence            9765432  22334433     4555699999999998875 5 899999999998532     1356776432221   


Q ss_pred             -CCCcccchhhhhHHHHhhhh
Q 029656          169 -PIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       169 -~~~~~~~y~~~~~sK~~~E~  188 (190)
                       +..+...|   +.||+.+|+
T Consensus       168 ~~~~~~~~Y---~~sK~~~E~  185 (353)
T PLN02896        168 NTKASGWVY---VLSKLLTEE  185 (353)
T ss_pred             ccCCCCccH---HHHHHHHHH
Confidence             12233467   889999996

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=99.86  E-value=3.5e-21  Score=149.70  Aligned_cols=148  Identities=29%  Similarity=0.402  Sum_probs=124.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh---h-cCCceEEEeccccccccC-------CcCE
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---I-GHPRFELIRHDVTEPLLI-------EVDQ  100 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~~~D~~~~~~~-------~~d~  100 (190)
                      .++|+||||.||||++.+-.|+++ |+.|++++.-.......+...   . ...++.+.++|++|..+.       ++|.
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~-gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~   80 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKR-GYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDA   80 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhC-CCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCce
Confidence            478999999999999999999999 899999876554443333322   1 136899999999997543       5999


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCC-cccchhh
Q 029656          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIG-MFSFVLK  178 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~-~~~~y~~  178 (190)
                      |+|+|+.-....+.+++..++..|+.++.++++.++++++ .+||.||+.+||.+...|++|+.     +.. +.+.|  
T Consensus        81 V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~~-----~t~~p~~py--  153 (343)
T KOG1371|consen   81 VMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEED-----PTDQPTNPY--  153 (343)
T ss_pred             EEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCcC-----CCCCCCCcc--
Confidence            9999998888888888999999999999999999999997 89999999999999999999994     443 66778  


Q ss_pred             hhHHHHhhhh
Q 029656          179 DGIMKLIGEL  188 (190)
Q Consensus       179 ~~~sK~~~E~  188 (190)
                       |.+|...|.
T Consensus       154 -g~tK~~iE~  162 (343)
T KOG1371|consen  154 -GKTKKAIEE  162 (343)
T ss_pred             -hhhhHHHHH
Confidence             777998875

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=99.86  E-value=1.6e-20  Score=152.21  Aligned_cols=148  Identities=31%  Similarity=0.381  Sum_probs=107.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCe-EEEEcCCCCCCh-hhhhhhhcCCceEEEecccccccc-----C--CcCEEE
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNE-VIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIY  102 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~-v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~-----~--~~d~vi  102 (190)
                      |++|+||||+||||+++++.|+++ +++ +.+++|...... ..+..+....++.++.+|+.|...     .  ++|+||
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~-g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi   79 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINE-TSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM   79 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHc-CCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence            478999999999999999999999 655 445554322111 111111122367888999998642     1  489999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc---------CC-eEEEEecceecCCCC--CCCCCCCCccCCCCC
Q 029656          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---------GA-RILLTSTSEVYGDPL--VHPQDESYWGNVNPI  170 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~-~~i~vSS~~~~~~~~--~~~~~e~~~~~~~~~  170 (190)
                      |+||......+...+..++++|+.++.+++++|.+.         ++ ++|++||.++|+...  ..+++|+     .+.
T Consensus        80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~-----~~~  154 (355)
T PRK10217         80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTET-----TPY  154 (355)
T ss_pred             ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCC-----CCC
Confidence            999976544344567789999999999999999762         34 899999999999542  3357776     455


Q ss_pred             CcccchhhhhHHHHhhhh
Q 029656          171 GMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       171 ~~~~~y~~~~~sK~~~E~  188 (190)
                      .+.+.|   +.||+.+|.
T Consensus       155 ~p~s~Y---~~sK~~~e~  169 (355)
T PRK10217        155 APSSPY---SASKASSDH  169 (355)
T ss_pred             CCCChh---HHHHHHHHH
Confidence            556677   888999875

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.85  E-value=2.9e-20  Score=149.91  Aligned_cols=152  Identities=22%  Similarity=0.252  Sum_probs=108.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh--hhhhhcCCceEEEecccccccc-----CCcCEEEE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN--LRKWIGHPRFELIRHDVTEPLL-----IEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~--~~~~~~~~~~~~~~~D~~~~~~-----~~~d~vi~  103 (190)
                      .+++|+||||+||||+++++.|+++ |++|+++.|+.......  +..+.....+.++.+|+.|...     .++|+|||
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   86 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQK-GYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH   86 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence            5689999999999999999999999 88998887764332211  1111111357889999998642     46999999


Q ss_pred             ccCCCCCcccccCc-hhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecceecCCCC----CCCCCCCCccCC----CCCCc
Q 029656          104 LACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDPL----VHPQDESYWGNV----NPIGM  172 (190)
Q Consensus       104 ~ag~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~~~~~~~~----~~~~~e~~~~~~----~~~~~  172 (190)
                      +|+....  ...++ ...+++|+.++.++++++.+. ++ ++||+||..+|+...    ..+++|+.|...    .+..+
T Consensus        87 ~A~~~~~--~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p  164 (338)
T PLN00198         87 VATPVNF--ASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPP  164 (338)
T ss_pred             eCCCCcc--CCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCc
Confidence            9985421  12233 346799999999999999876 45 999999999998532    345677654321    12334


Q ss_pred             ccchhhhhHHHHhhhh
Q 029656          173 FSFVLKDGIMKLIGEL  188 (190)
Q Consensus       173 ~~~y~~~~~sK~~~E~  188 (190)
                      .+.|   +.||+.+|+
T Consensus       165 ~~~Y---~~sK~~~E~  177 (338)
T PLN00198        165 TWGY---PASKTLAEK  177 (338)
T ss_pred             cchh---HHHHHHHHH
Confidence            5567   888999986

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=99.85  E-value=2.5e-20  Score=150.06  Aligned_cols=147  Identities=30%  Similarity=0.457  Sum_probs=110.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc-------CCcCEEEE
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL-------IEVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~-------~~~d~vi~  103 (190)
                      |+|+||||+||||+++++.|+++ |++|++++|...........+.  ...++.++.+|+.|...       .++|+|||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~-g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh   79 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIH   79 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHC-CCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEE
Confidence            57999999999999999999999 8899988764333222221111  12356778899988642       25899999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCC-CcccchhhhhH
Q 029656          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPI-GMFSFVLKDGI  181 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~-~~~~~y~~~~~  181 (190)
                      +|+..........+.+.+++|+.++.+++++|++.++ ++|++||+++|+.....+++|+.     +. .+...|   +.
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~~-----~~~~p~~~Y---~~  151 (338)
T PRK10675         80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVESF-----PTGTPQSPY---GK  151 (338)
T ss_pred             CCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCcccccc-----CCCCCCChh---HH
Confidence            9986543333345667899999999999999999887 89999999999976556778873     33 344566   88


Q ss_pred             HHHhhhh
Q 029656          182 MKLIGEL  188 (190)
Q Consensus       182 sK~~~E~  188 (190)
                      +|..+|+
T Consensus       152 sK~~~E~  158 (338)
T PRK10675        152 SKLMVEQ  158 (338)
T ss_pred             HHHHHHH
Confidence            8999885

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=99.85  E-value=1.6e-20  Score=143.62  Aligned_cols=141  Identities=36%  Similarity=0.501  Sum_probs=113.3

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccC-------CcCEEEEccCC
Q 029656           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLACP  107 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-------~~d~vi~~ag~  107 (190)
                      |+||||+||||+++++.|+++ ++.|+.+.|+..........    ..+.++.+|+.+....       ++|+|||+|+.
T Consensus         1 IlI~GatG~iG~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~----~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~   75 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKK-GHEVIVLSRSSNSESFEEKK----LNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAF   75 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TTEEEEEESCSTGGHHHHHH----TTEEEEESETTSHHHHHHHHHHHTESEEEEEBSS
T ss_pred             EEEEccCCHHHHHHHHHHHHc-CCcccccccccccccccccc----ceEEEEEeeccccccccccccccCceEEEEeecc
Confidence            799999999999999999999 88888888865544332221    1789999999986432       57999999987


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhh
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIG  186 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~  186 (190)
                      .............++.|+.++.+++++|++.++ ++|++||+.+|+.....+++|+     .+..+.+.|   +.+|...
T Consensus        76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~-----~~~~~~~~Y---~~~K~~~  147 (236)
T PF01370_consen   76 SSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDED-----SPINPLSPY---GASKRAA  147 (236)
T ss_dssp             SSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETT-----SGCCHSSHH---HHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccc---ccccccc
Confidence            542223356778899999999999999999998 9999999999998877788888     444555667   8889998


Q ss_pred             hh
Q 029656          187 EL  188 (190)
Q Consensus       187 E~  188 (190)
                      |+
T Consensus       148 e~  149 (236)
T PF01370_consen  148 EE  149 (236)
T ss_dssp             HH
T ss_pred             cc
Confidence            85

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=99.84  E-value=3.5e-20  Score=150.11  Aligned_cols=148  Identities=31%  Similarity=0.392  Sum_probs=105.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC-CChhhhhhhhcCCceEEEecccccccc-------CCcCEEEEc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHL  104 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~~  104 (190)
                      |+|+||||+||||+++++.|++++...|+++++... .....+..+.....+.++.+|+.|.+.       .++|+|||+
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   80 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMHL   80 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEEC
Confidence            579999999999999999999993344655554321 111222222223457888999998642       258999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc---------CC-eEEEEecceecCCCCC----------CCCCCCCc
Q 029656          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---------GA-RILLTSTSEVYGDPLV----------HPQDESYW  164 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---------~~-~~i~vSS~~~~~~~~~----------~~~~e~~~  164 (190)
                      ||..........++.++++|+.++.+++++|++.         ++ ++|++||.++|+....          .+++|+  
T Consensus        81 A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~--  158 (352)
T PRK10084         81 AAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTET--  158 (352)
T ss_pred             CcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCcccc--
Confidence            9876543334567789999999999999999874         34 8999999999985311          134555  


Q ss_pred             cCCCCCCcccchhhhhHHHHhhhh
Q 029656          165 GNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       165 ~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                         .+..+.+.|   +.||+.+|+
T Consensus       159 ---~~~~p~~~Y---~~sK~~~E~  176 (352)
T PRK10084        159 ---TAYAPSSPY---SASKASSDH  176 (352)
T ss_pred             ---CCCCCCChh---HHHHHHHHH
Confidence               455666677   888999885

>PLN02778 3,5-epimerase/4-reductase

Probab=99.84  E-value=8.4e-20  Score=145.05  Aligned_cols=134  Identities=19%  Similarity=0.238  Sum_probs=97.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASP  110 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~  110 (190)
                      ..|+|+||||+||||++|++.|+++ |++|+...++... ...            +..|+.   ..++|+|||+||....
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~-g~~V~~~~~~~~~-~~~------------v~~~l~---~~~~D~ViH~Aa~~~~   70 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQ-GIDFHYGSGRLEN-RAS------------LEADID---AVKPTHVFNAAGVTGR   70 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhC-CCEEEEecCccCC-HHH------------HHHHHH---hcCCCEEEECCcccCC
Confidence            3478999999999999999999999 7888754322111 111            112222   1368999999997653


Q ss_pred             c---ccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCC------CCCCCCCCccCCCCCCcccchhhhhH
Q 029656          111 I---FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL------VHPQDESYWGNVNPIGMFSFVLKDGI  181 (190)
Q Consensus       111 ~---~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~------~~~~~e~~~~~~~~~~~~~~y~~~~~  181 (190)
                      .   +++.++.+.+++|+.++.+++++|++.+++++++||.++|+...      ..+++|++    .+..+.+.|   +.
T Consensus        71 ~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~----~p~~~~s~Y---g~  143 (298)
T PLN02778         71 PNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNYATGCIFEYDDAHPLGSGIGFKEED----TPNFTGSFY---SK  143 (298)
T ss_pred             CCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecceEeCCCCCCCcccCCCCCcCC----CCCCCCCch---HH
Confidence            2   34567888999999999999999999998888899989887532      22466664    233334678   88


Q ss_pred             HHHhhhh
Q 029656          182 MKLIGEL  188 (190)
Q Consensus       182 sK~~~E~  188 (190)
                      +|+.+|+
T Consensus       144 sK~~~E~  150 (298)
T PLN02778        144 TKAMVEE  150 (298)
T ss_pred             HHHHHHH
Confidence            8999996

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=99.84  E-value=1.2e-19  Score=145.49  Aligned_cols=153  Identities=22%  Similarity=0.299  Sum_probs=109.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---c-CCceEEEeccccccc-----cCCcCEE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---G-HPRFELIRHDVTEPL-----LIEVDQI  101 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~-~~~~~~~~~D~~~~~-----~~~~d~v  101 (190)
                      .+|+++||||+||||+++++.|+++ |++|+++.|+....... ..+.   . ..+++++.+|+++..     +.++|+|
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~-G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   81 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFR-GYTINATVRDPKDRKKT-DHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV   81 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEEcCCcchhhH-HHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence            4689999999999999999999999 88998887765443221 1111   1 246889999999875     2469999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecceecCCC-----CCCCCCCCCccCCCC-CCcc
Q 029656          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVYGDP-----LVHPQDESYWGNVNP-IGMF  173 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~~~~~~~-----~~~~~~e~~~~~~~~-~~~~  173 (190)
                      ||+||........+.+.+.+++|+.++.+++++|.+. +. ++|++||..+|+.+     ...+++|+.+..... ..+.
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~  161 (325)
T PLN02989         82 FHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERK  161 (325)
T ss_pred             EEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhcccc
Confidence            9999965433333455678999999999999999875 34 89999998876542     233577775322111 1123


Q ss_pred             cchhhhhHHHHhhhh
Q 029656          174 SFVLKDGIMKLIGEL  188 (190)
Q Consensus       174 ~~y~~~~~sK~~~E~  188 (190)
                      +.|   +.||+.+|+
T Consensus       162 ~~Y---~~sK~~~E~  173 (325)
T PLN02989        162 QWY---VLSKTLAED  173 (325)
T ss_pred             cch---HHHHHHHHH
Confidence            456   888999985

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=99.83  E-value=1.9e-19  Score=144.29  Aligned_cols=152  Identities=23%  Similarity=0.345  Sum_probs=108.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh----cCCceEEEeccccccc-----cCCcCEE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----GHPRFELIRHDVTEPL-----LIEVDQI  101 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~-----~~~~d~v  101 (190)
                      ++++|+||||+||||+++++.|+++ |++|+++.|+...... ...+.    ...++.++.+|+.+..     +.++|+|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~v   81 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLR-GYTVKATVRDLTDRKK-TEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAV   81 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCCcchHH-HHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEE
Confidence            5789999999999999999999999 8899988886554321 11111    1246889999999875     3469999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecceec--CCC---CCCCCCCCCccCCC-CCCcc
Q 029656          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVY--GDP---LVHPQDESYWGNVN-PIGMF  173 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~~~~--~~~---~~~~~~e~~~~~~~-~~~~~  173 (190)
                      ||+|+..... ..+.....+++|+.++.+++++|++. ++ |+|++||.++|  +..   ...+++|+.|.... +..+.
T Consensus        82 ih~A~~~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~  160 (322)
T PLN02986         82 FHTASPVFFT-VKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETK  160 (322)
T ss_pred             EEeCCCcCCC-CCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhccc
Confidence            9999865322 12223457899999999999999886 55 89999998754  432   23457787653221 11233


Q ss_pred             cchhhhhHHHHhhhh
Q 029656          174 SFVLKDGIMKLIGEL  188 (190)
Q Consensus       174 ~~y~~~~~sK~~~E~  188 (190)
                      +.|   +.||..+|+
T Consensus       161 ~~Y---~~sK~~aE~  172 (322)
T PLN02986        161 NWY---PLSKILAEN  172 (322)
T ss_pred             cch---HHHHHHHHH
Confidence            567   888999985

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.83  E-value=1.4e-19  Score=157.93  Aligned_cols=150  Identities=29%  Similarity=0.379  Sum_probs=111.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCCCh-hhhhhhhcCCceEEEecccccccc-------CCcCEE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLL-------IEVDQI  101 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~v  101 (190)
                      ++|+|+||||+||||+++++.|++++ +++|++++|...... ..+.......++.++.+|+.|...       .++|+|
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V   84 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI   84 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence            56899999999999999999999973 578888877421111 111111123478899999998532       469999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecceecCCCCCCC---CCCCCccCCCCCCcccch
Q 029656          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHP---QDESYWGNVNPIGMFSFV  176 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~~~~~~~~~~---~~e~~~~~~~~~~~~~~y  176 (190)
                      ||+|+......+..++.+.+++|+.++.+++++|++.+ + |+||+||..+||.....+   .+|+     .+..+.+.|
T Consensus        85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~-----~~~~p~~~Y  159 (668)
T PLN02260         85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEA-----SQLLPTNPY  159 (668)
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCcccc-----CCCCCCCCc
Confidence            99999766544445667788999999999999999987 5 899999999999754432   2343     344455678


Q ss_pred             hhhhHHHHhhhh
Q 029656          177 LKDGIMKLIGEL  188 (190)
Q Consensus       177 ~~~~~sK~~~E~  188 (190)
                         +.+|+.+|+
T Consensus       160 ---~~sK~~aE~  168 (668)
T PLN02260        160 ---SATKAGAEM  168 (668)
T ss_pred             ---HHHHHHHHH
Confidence               888999986

>PLN02650 dihydroflavonol-4-reductase

Probab=99.83  E-value=1.8e-19  Score=146.10  Aligned_cols=151  Identities=24%  Similarity=0.313  Sum_probs=107.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc----CCceEEEeccccccc-----cCCcCEEE
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPL-----LIEVDQIY  102 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~-----~~~~d~vi  102 (190)
                      .++|+||||+||||+++++.|+++ |++|+++.|+...... +..+..    ...+.++.+|+.+..     +.++|+||
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~~-G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi   82 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLER-GYTVRATVRDPANVKK-VKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF   82 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHC-CCEEEEEEcCcchhHH-HHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence            478999999999999999999999 8999988886443322 111111    125788999999864     23699999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecceecCCCC-CCC-CCCCCccCCC----CCCccc
Q 029656          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPL-VHP-QDESYWGNVN----PIGMFS  174 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~~~~~~~-~~~-~~e~~~~~~~----~~~~~~  174 (190)
                      |+|+..... ........+++|+.++.+++++|.+.+ + |+||+||.++|+... ..+ ++|+.|.+.+    +..+.+
T Consensus        83 H~A~~~~~~-~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~  161 (351)
T PLN02650         83 HVATPMDFE-SKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGW  161 (351)
T ss_pred             EeCCCCCCC-CCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccc
Confidence            999864321 122234688999999999999999876 5 899999998776432 223 5777553221    112234


Q ss_pred             chhhhhHHHHhhhh
Q 029656          175 FVLKDGIMKLIGEL  188 (190)
Q Consensus       175 ~y~~~~~sK~~~E~  188 (190)
                      .|   +.||..+|+
T Consensus       162 ~Y---~~sK~~~E~  172 (351)
T PLN02650        162 MY---FVSKTLAEK  172 (351)
T ss_pred             hH---HHHHHHHHH
Confidence            56   888999986

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=99.83  E-value=2.3e-19  Score=143.51  Aligned_cols=151  Identities=23%  Similarity=0.310  Sum_probs=106.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---c-CCceEEEeccccccc-----cCCcCEE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---G-HPRFELIRHDVTEPL-----LIEVDQI  101 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~-~~~~~~~~~D~~~~~-----~~~~d~v  101 (190)
                      .+++|+||||+||||+++++.|+++ |++|.++.|+...... ...+.   . ..++.++.+|+.+..     +.++|+|
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~-g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V   80 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQR-GYTVKATVRDPNDPKK-TEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV   80 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHC-CCEEEEEEcCCCchhh-HHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence            4689999999999999999999999 8999988886543221 11111   1 246889999999864     3579999


Q ss_pred             EEccCCCCCcccccCc-hhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecce--ecCCC---CCCCCCCCCccCCC-CCCc
Q 029656          102 YHLACPASPIFYKYNP-VKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSE--VYGDP---LVHPQDESYWGNVN-PIGM  172 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~-~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~~--~~~~~---~~~~~~e~~~~~~~-~~~~  172 (190)
                      ||+|+....  ....+ ..++++|+.++.+++++|++. ++ |+|++||.+  +|+..   ...+++|+.+.... +...
T Consensus        81 ih~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~  158 (322)
T PLN02662         81 FHTASPFYH--DVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEES  158 (322)
T ss_pred             EEeCCcccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhcc
Confidence            999986532  22234 378899999999999999887 66 899999976  46532   22356776321100 0111


Q ss_pred             ccchhhhhHHHHhhhh
Q 029656          173 FSFVLKDGIMKLIGEL  188 (190)
Q Consensus       173 ~~~y~~~~~sK~~~E~  188 (190)
                      ...|   +.+|+.+|+
T Consensus       159 ~~~Y---~~sK~~~E~  171 (322)
T PLN02662        159 KLWY---VLSKTLAEE  171 (322)
T ss_pred             cchH---HHHHHHHHH
Confidence            2356   888999885

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.83  E-value=1.3e-19  Score=144.08  Aligned_cols=143  Identities=37%  Similarity=0.482  Sum_probs=108.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----CCc-CEEEEccC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----IEV-DQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~-d~vi~~ag  106 (190)
                      |+|+||||+||||++|++.|+++ |++|.+++|.........      ..+.++.+|+.+...     ... |+|||+|+
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa   73 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAA-GHDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAA   73 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhC-CCeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEccc
Confidence            34999999999999999999999 999999998665543322      356788888887532     234 99999999


Q ss_pred             CCCCccccc-CchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCC-CCCCCCCCCccCCCCCCcccchhhhhHHH
Q 029656          107 PASPIFYKY-NPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDP-LVHPQDESYWGNVNPIGMFSFVLKDGIMK  183 (190)
Q Consensus       107 ~~~~~~~~~-~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~-~~~~~~e~~~~~~~~~~~~~~y~~~~~sK  183 (190)
                      ......... ++...+.+|+.++.+++++|++.++ ++||.||.++|+.. ...+++|+.    .+..+.+.|   +.+|
T Consensus        74 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~----~~~~p~~~Y---g~sK  146 (314)
T COG0451          74 QSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDL----GPPRPLNPY---GVSK  146 (314)
T ss_pred             cCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCccccc----CCCCCCCHH---HHHH
Confidence            766443322 3566899999999999999999776 89998887877765 333677773    234443466   8889


Q ss_pred             Hhhhhc
Q 029656          184 LIGELG  189 (190)
Q Consensus       184 ~~~E~~  189 (190)
                      +.+|+.
T Consensus       147 ~~~E~~  152 (314)
T COG0451         147 LAAEQL  152 (314)
T ss_pred             HHHHHH
Confidence            999963

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=99.83  E-value=7.2e-20  Score=145.75  Aligned_cols=134  Identities=22%  Similarity=0.323  Sum_probs=94.8

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc---------c-----cCCcCE
Q 029656           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP---------L-----LIEVDQ  100 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~---------~-----~~~~d~  100 (190)
                      |+||||+||||++|++.|++. |++++++.|+...... ..        .+..+|+.|.         .     ..++|+
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~-g~~~v~~~~~~~~~~~-~~--------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~   71 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDK-GITDILVVDNLKDGTK-FV--------NLVDLDIADYMDKEDFLAQIMAGDDFGDIEA   71 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhC-CCceEEEecCCCcchH-HH--------hhhhhhhhhhhhHHHHHHHHhcccccCCccE
Confidence            799999999999999999999 7755555443322111 10        1112233221         1     126899


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhh
Q 029656          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDG  180 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~  180 (190)
                      |||+||.....  ..++...++.|+.++.+++++|++.++++||+||.++|+.....+++|+     .+..+.+.|   +
T Consensus        72 Vih~A~~~~~~--~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y---~  141 (308)
T PRK11150         72 IFHEGACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTDDFIEER-----EYEKPLNVY---G  141 (308)
T ss_pred             EEECceecCCc--CCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcchHHhCcCCCCCCccC-----CCCCCCCHH---H
Confidence            99999854432  2234567899999999999999998889999999999997655456665     344555667   8


Q ss_pred             HHHHhhhh
Q 029656          181 IMKLIGEL  188 (190)
Q Consensus       181 ~sK~~~E~  188 (190)
                      .+|+.+|+
T Consensus       142 ~sK~~~E~  149 (308)
T PRK11150        142 YSKFLFDE  149 (308)
T ss_pred             HHHHHHHH
Confidence            88999885

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=99.82  E-value=1.9e-19  Score=147.06  Aligned_cols=146  Identities=25%  Similarity=0.273  Sum_probs=107.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEcc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~a  105 (190)
                      .+|+|+||||+||||+++++.|+++ |++|++++|........     ......++.+|+.+..     ..++|+|||+|
T Consensus        20 ~~~~IlVtGgtGfIG~~l~~~L~~~-G~~V~~v~r~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         20 EKLRICITGAGGFIASHIARRLKAE-GHYIIASDWKKNEHMSE-----DMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHhC-CCEEEEEEecccccccc-----ccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            5689999999999999999999999 89999998854321110     0113567788998753     34799999999


Q ss_pred             CCCCCc-ccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCC----CCCCCCCccCCCCCCcccchhhh
Q 029656          106 CPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV----HPQDESYWGNVNPIGMFSFVLKD  179 (190)
Q Consensus       106 g~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~----~~~~e~~~~~~~~~~~~~~y~~~  179 (190)
                      +..... ....++...+..|+.++.+++++|++.++ ++||+||..+|+....    .++.|+..   .+..+.+.|   
T Consensus        94 a~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~---~p~~p~s~Y---  167 (370)
T PLN02695         94 ADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDA---WPAEPQDAY---  167 (370)
T ss_pred             cccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccC---CCCCCCCHH---
Confidence            865422 11234455678899999999999999887 8999999999996532    13555421   245566677   


Q ss_pred             hHHHHhhhh
Q 029656          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      +.+|..+|+
T Consensus       168 g~sK~~~E~  176 (370)
T PLN02695        168 GLEKLATEE  176 (370)
T ss_pred             HHHHHHHHH
Confidence            888999985

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=99.82  E-value=1.8e-19  Score=144.21  Aligned_cols=151  Identities=32%  Similarity=0.388  Sum_probs=114.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCCChhhhhhh-hcCCceEEEeccccccc-----cCCcCEEEE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKW-IGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~-----~~~~d~vi~  103 (190)
                      ++.+++||||+||+|+++++.|++++ ..++.+++..+......-... ..+..+..+++|+.+..     +.++ .|+|
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~-~Vvh   81 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQGA-VVVH   81 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccCc-eEEE
Confidence            56789999999999999999999994 378999888654222111111 12568899999999874     4467 7888


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCC-CCCCCCCccCCCCCCcccchhhhhH
Q 029656          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV-HPQDESYWGNVNPIGMFSFVLKDGI  181 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~-~~~~e~~~~~~~~~~~~~~y~~~~~  181 (190)
                      +|+...+.....+++..+++|+.+|.++++.|.+.++ ++||+||.+|...... ..-+|+.+   .|......|   +.
T Consensus        82 ~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p---~p~~~~d~Y---~~  155 (361)
T KOG1430|consen   82 CAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLP---YPLKHIDPY---GE  155 (361)
T ss_pred             eccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCC---Ccccccccc---ch
Confidence            8877777666667889999999999999999999998 9999999998776655 34455422   223333567   77


Q ss_pred             HHHhhhh
Q 029656          182 MKLIGEL  188 (190)
Q Consensus       182 sK~~~E~  188 (190)
                      ||+.+|+
T Consensus       156 sKa~aE~  162 (361)
T KOG1430|consen  156 SKALAEK  162 (361)
T ss_pred             HHHHHHH
Confidence            7999996

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=99.82  E-value=1.6e-19  Score=142.25  Aligned_cols=126  Identities=29%  Similarity=0.383  Sum_probs=100.4

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----c--CCcCEEEEccC
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----L--IEVDQIYHLAC  106 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~--~~~d~vi~~ag  106 (190)
                      +|+||||+||||+++++.|+++ |++|+++.|+                    .+|+.+.+     +  .++|+|||+|+
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~-g~~v~~~~r~--------------------~~d~~~~~~~~~~~~~~~~d~vi~~a~   59 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPE-GRVVVALTSS--------------------QLDLTDPEALERLLRAIRPDAVVNTAA   59 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhc-CCEEEEeCCc--------------------ccCCCCHHHHHHHHHhCCCCEEEECCc
Confidence            5899999999999999999999 8999999884                    23444432     1  24799999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHhh
Q 029656          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIG  186 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~  186 (190)
                      ..........+...+++|+.++.++++++++.+.++|++||.++|+.....+++|+.     +..+.+.|   +.+|..+
T Consensus        60 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~Ss~~vy~~~~~~~~~E~~-----~~~~~~~Y---~~~K~~~  131 (287)
T TIGR01214        60 YTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVFDGEGKRPYREDD-----ATNPLNVY---GQSKLAG  131 (287)
T ss_pred             cccccccccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecCCCCCCCCCCC-----CCCCcchh---hHHHHHH
Confidence            665433344567789999999999999999888899999999999876666788883     44455677   8889999


Q ss_pred             hh
Q 029656          187 EL  188 (190)
Q Consensus       187 E~  188 (190)
                      |+
T Consensus       132 E~  133 (287)
T TIGR01214       132 EQ  133 (287)
T ss_pred             HH
Confidence            85

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=99.82  E-value=4.4e-19  Score=141.62  Aligned_cols=146  Identities=35%  Similarity=0.576  Sum_probs=111.1

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEEEccC
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLAC  106 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~~ag  106 (190)
                      +|+||||+|+||+++++.|+++ +++|++++|.................+.++.+|+.+...       .++|+|||+||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~-g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag   79 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLES-GHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAG   79 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhC-CCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECcc
Confidence            5899999999999999999999 888888866443333222222111257788899998742       26999999999


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHHh
Q 029656          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      ..........+.+.+..|+.++.+++++|.+.++ ++|++||.++|+.....+++|+     ++..+...|   +.+|..
T Consensus        80 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~-----~~~~~~~~y---~~sK~~  151 (328)
T TIGR01179        80 LIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISED-----SPLGPINPY---GRSKLM  151 (328)
T ss_pred             ccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCcccc-----CCCCCCCch---HHHHHH
Confidence            7654434456677899999999999999998886 8999999999987665577887     344455667   888999


Q ss_pred             hhh
Q 029656          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      +|+
T Consensus       152 ~e~  154 (328)
T TIGR01179       152 SER  154 (328)
T ss_pred             HHH
Confidence            885

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=99.81  E-value=6.7e-19  Score=140.03  Aligned_cols=147  Identities=33%  Similarity=0.456  Sum_probs=108.3

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCC-ChhhhhhhhcCCceEEEecccccccc-----C--CcCEEEEc
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEPLL-----I--EVDQIYHL  104 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~-----~--~~d~vi~~  104 (190)
                      +|+||||+|+||+++++.|+++++ .+|+++.|.... ....+..+.....+.++.+|+.|...     .  ++|+|||+
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~   80 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF   80 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence            589999999999999999999832 688888763211 11222222223467888999998642     2  38999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--CeEEEEecceecCCCCCC-CCCCCCccCCCCCCcccchhhhhH
Q 029656          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYGDPLVH-PQDESYWGNVNPIGMFSFVLKDGI  181 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~i~vSS~~~~~~~~~~-~~~e~~~~~~~~~~~~~~y~~~~~  181 (190)
                      |+......+...++..+++|+.++.+++++|++.+  .++|++||..+|+..... +++|.     .+..+...|   +.
T Consensus        81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~-----~~~~~~~~Y---~~  152 (317)
T TIGR01181        81 AAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTET-----TPLAPSSPY---SA  152 (317)
T ss_pred             ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCC-----CCCCCCCch---HH
Confidence            98765444455677889999999999999998863  499999999999965432 56676     344455567   88


Q ss_pred             HHHhhhh
Q 029656          182 MKLIGEL  188 (190)
Q Consensus       182 sK~~~E~  188 (190)
                      +|+.+|.
T Consensus       153 sK~~~e~  159 (317)
T TIGR01181       153 SKAASDH  159 (317)
T ss_pred             HHHHHHH
Confidence            8999885

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=99.81  E-value=1e-18  Score=140.40  Aligned_cols=136  Identities=26%  Similarity=0.370  Sum_probs=102.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----CCcCEEEE
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----IEVDQIYH  103 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~d~vi~  103 (190)
                      +++|+++||||+|+||+++++.|++++ +++|++++|+..... .+........+.++.+|+.|...     .++|+|||
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~-~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih   80 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQW-EMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVH   80 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHH-HHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEE
Confidence            367999999999999999999999983 378988887644321 12222223468899999999753     46999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHH
Q 029656          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIM  182 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~s  182 (190)
                      +||.......+.++.+.+++|+.++.++++++.+.++ ++|++||...                   ..+.+.|   +.|
T Consensus        81 ~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~-------------------~~p~~~Y---~~s  138 (324)
T TIGR03589        81 AAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKA-------------------ANPINLY---GAT  138 (324)
T ss_pred             CcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCC-------------------CCCCCHH---HHH
Confidence            9997554444556778999999999999999999886 8999998421                   1122456   888


Q ss_pred             HHhhhh
Q 029656          183 KLIGEL  188 (190)
Q Consensus       183 K~~~E~  188 (190)
                      |+.+|+
T Consensus       139 K~~~E~  144 (324)
T TIGR03589       139 KLASDK  144 (324)
T ss_pred             HHHHHH
Confidence            999885

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=99.80  E-value=1.1e-18  Score=139.70  Aligned_cols=143  Identities=28%  Similarity=0.420  Sum_probs=108.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~  107 (190)
                      |+++||||+|+||+++++.|+++ +++|++++|+...... +    ...++.++.+|+.+..     ..++|+|||+|+.
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~-~----~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~   74 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQ-GEEVRVLVRPTSDRRN-L----EGLDVEIVEGDLRDPASLRKAVAGCRALFHVAAD   74 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHC-CCEEEEEEecCccccc-c----ccCCceEEEeeCCCHHHHHHHHhCCCEEEEecee
Confidence            57999999999999999999999 8999999986544221 1    1236788999999864     3468999999975


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCC-CCCCCCCCCCccCCCCCCcccchhhhhHHHHh
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD-PLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~-~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      ...  ....++..+++|+.++.++++++.+.++ ++|++||.++|+. ....+++|+.     +..+...++.|+.+|..
T Consensus        75 ~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~-----~~~~~~~~~~Y~~sK~~  147 (328)
T TIGR03466        75 YRL--WAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETT-----PSSLDDMIGHYKRSKFL  147 (328)
T ss_pred             ccc--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccC-----CCCcccccChHHHHHHH
Confidence            422  2345678899999999999999998886 8999999999985 3445677773     33322222234888998


Q ss_pred             hhh
Q 029656          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      +|+
T Consensus       148 ~e~  150 (328)
T TIGR03466       148 AEQ  150 (328)
T ss_pred             HHH
Confidence            875

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=99.79  E-value=6e-19  Score=140.03  Aligned_cols=129  Identities=22%  Similarity=0.214  Sum_probs=96.3

Q ss_pred             EEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEEEccCCC
Q 029656           36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLACPA  108 (190)
Q Consensus        36 lItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~~ag~~  108 (190)
                      |||||+||||++|++.|++. ++.|+++.+..                   .+|+.+...       .++|+|||+|+..
T Consensus         1 lItGa~GfiG~~l~~~L~~~-g~~v~~~~~~~-------------------~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~   60 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEAL-GFTNLVLRTHK-------------------ELDLTRQADVEAFFAKEKPTYVILAAAKV   60 (306)
T ss_pred             CcccCCCcccHHHHHHHHhC-CCcEEEeeccc-------------------cCCCCCHHHHHHHHhccCCCEEEEeeeee
Confidence            69999999999999999998 66666554321                   256655421       2589999999865


Q ss_pred             CC-cccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCccc-chhhhhHHHHh
Q 029656          109 SP-IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS-FVLKDGIMKLI  185 (190)
Q Consensus       109 ~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~-~y~~~~~sK~~  185 (190)
                      .. ..+...+.+.+++|+.++.+++++|+++++ ++|++||+.+|+.....+++|+++.. .+..+.+ .|   +.+|..
T Consensus        61 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y---~~sK~~  136 (306)
T PLN02725         61 GGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLT-GPPEPTNEWY---AIAKIA  136 (306)
T ss_pred             cccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhcc-CCCCCCcchH---HHHHHH
Confidence            42 223345677899999999999999999987 89999999999976667888875321 1333322 47   888999


Q ss_pred             hhh
Q 029656          186 GEL  188 (190)
Q Consensus       186 ~E~  188 (190)
                      +|+
T Consensus       137 ~e~  139 (306)
T PLN02725        137 GIK  139 (306)
T ss_pred             HHH
Confidence            985

>PLN02686 cinnamoyl-CoA reductase

Probab=99.79  E-value=2.2e-18  Score=140.66  Aligned_cols=156  Identities=18%  Similarity=0.185  Sum_probs=109.4

Q ss_pred             cccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-------CCceEEEeccccccc-----c
Q 029656           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-------HPRFELIRHDVTEPL-----L   95 (190)
Q Consensus        28 ~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~-----~   95 (190)
                      ..+++++|+||||+||||+++++.|+++ |++|+++.|+..... .+..+..       ...+.++.+|+.|..     +
T Consensus        49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~-G~~V~~~~r~~~~~~-~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i  126 (367)
T PLN02686         49 ADAEARLVCVTGGVSFLGLAIVDRLLRH-GYSVRIAVDTQEDKE-KLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAF  126 (367)
T ss_pred             cCCCCCEEEEECCchHHHHHHHHHHHHC-CCEEEEEeCCHHHHH-HHHHHhhhccccccCCceEEEEcCCCCHHHHHHHH
Confidence            3457899999999999999999999999 899988777543211 1222110       125788899999864     3


Q ss_pred             CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecc--eecCCC--C--CCCCCCCCccCC
Q 029656           96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTS--EVYGDP--L--VHPQDESYWGNV  167 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~--~~~~~~--~--~~~~~e~~~~~~  167 (190)
                      .++|+|||+|+...+...........++|+.++.+++++|++. ++ |+||+||.  .+|+..  .  +.+++|+.|...
T Consensus       127 ~~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~  206 (367)
T PLN02686        127 DGCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDE  206 (367)
T ss_pred             HhccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCCh
Confidence            4699999999876443211122355688999999999999886 56 89999996  477642  1  234677754322


Q ss_pred             -CCCCcccchhhhhHHHHhhhh
Q 029656          168 -NPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       168 -~~~~~~~~y~~~~~sK~~~E~  188 (190)
                       .+..+.+.|   +.||+.+|+
T Consensus       207 ~~~~~p~~~Y---~~sK~~~E~  225 (367)
T PLN02686        207 SFCRDNKLWY---ALGKLKAEK  225 (367)
T ss_pred             hhcccccchH---HHHHHHHHH
Confidence             233344556   888999986

>PLN02583 cinnamoyl-CoA reductase

Probab=99.78  E-value=4.2e-18  Score=135.19  Aligned_cols=153  Identities=18%  Similarity=0.221  Sum_probs=106.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh--hhhhhhh-cCCceEEEeccccccc-----cCCcCEEE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK--DNLRKWI-GHPRFELIRHDVTEPL-----LIEVDQIY  102 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~--~~~~~~~-~~~~~~~~~~D~~~~~-----~~~~d~vi  102 (190)
                      ++++|+||||+|+||+++++.|+++ |++|+++.|+.....  ..+..+. ...++.++.+|++|..     +.++|+|+
T Consensus         5 ~~k~vlVTGatG~IG~~lv~~Ll~~-G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~   83 (297)
T PLN02583          5 SSKSVCVMDASGYVGFWLVKRLLSR-GYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLF   83 (297)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEE
Confidence            5689999999999999999999999 899999888532211  1122221 1236888999999864     35799999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecceec--CCC---CCCCCCCCCccCCCCC-Cccc
Q 029656          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVY--GDP---LVHPQDESYWGNVNPI-GMFS  174 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~~~~--~~~---~~~~~~e~~~~~~~~~-~~~~  174 (190)
                      |.++.....  ....+.++++|+.++.+++++|.+. ++ |+|++||..++  +..   ...+++|+.|.+.... ....
T Consensus        84 ~~~~~~~~~--~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~  161 (297)
T PLN02583         84 CCFDPPSDY--PSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKL  161 (297)
T ss_pred             EeCccCCcc--cccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhccc
Confidence            987644321  1235678999999999999999886 45 89999998764  311   2235777755322111 1112


Q ss_pred             chhhhhHHHHhhhhc
Q 029656          175 FVLKDGIMKLIGELG  189 (190)
Q Consensus       175 ~y~~~~~sK~~~E~~  189 (190)
                      .|   +.||..+|+.
T Consensus       162 ~Y---~~sK~~aE~~  173 (297)
T PLN02583        162 WH---ALAKTLSEKT  173 (297)
T ss_pred             HH---HHHHHHHHHH
Confidence            45   8889999873

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.78  E-value=3.4e-18  Score=141.79  Aligned_cols=143  Identities=26%  Similarity=0.328  Sum_probs=115.2

Q ss_pred             hhcccccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh---hcCCceEEEecccccccc-----
Q 029656           24 RFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPLL-----   95 (190)
Q Consensus        24 ~~~~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~-----   95 (190)
                      ..-..+..+|+|+||||+|.||+.+++.+++.+-.++++++|+......--.++   ++..++.++-+|+.|.+.     
T Consensus       242 ~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~  321 (588)
T COG1086         242 ELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAM  321 (588)
T ss_pred             HHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHH
Confidence            333445689999999999999999999999995578888888655443332222   234788999999999753     


Q ss_pred             C--CcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCc
Q 029656           96 I--EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGM  172 (190)
Q Consensus        96 ~--~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~  172 (190)
                      .  ++|+|||+|+.-.++.++.+|.+.+++|+.||.|++++|.++++ ++|++||.                   .-.+|
T Consensus       322 ~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTD-------------------KAV~P  382 (588)
T COG1086         322 EGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTD-------------------KAVNP  382 (588)
T ss_pred             hcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecC-------------------cccCC
Confidence            2  49999999998888888999999999999999999999999998 89999982                   23334


Q ss_pred             ccchhhhhHHHHhhhh
Q 029656          173 FSFVLKDGIMKLIGEL  188 (190)
Q Consensus       173 ~~~y~~~~~sK~~~E~  188 (190)
                      .+.|   |.+|..+|+
T Consensus       383 tNvm---GaTKr~aE~  395 (588)
T COG1086         383 TNVM---GATKRLAEK  395 (588)
T ss_pred             chHh---hHHHHHHHH
Confidence            4678   888999885

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=99.77  E-value=1.7e-18  Score=134.22  Aligned_cols=145  Identities=27%  Similarity=0.298  Sum_probs=87.9

Q ss_pred             EEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCCh--hhhhhh---------h---cCCceEEEecccccccc------
Q 029656           37 VTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSK--DNLRKW---------I---GHPRFELIRHDVTEPLL------   95 (190)
Q Consensus        37 ItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~--~~~~~~---------~---~~~~~~~~~~D~~~~~~------   95 (190)
                      |||||||||+++++.|++++. .+|+++.|......  +.+...         .   ...++.++.+|+.++.+      
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            799999999999999999943 28999999653311  112110         0   15699999999998753      


Q ss_pred             -----CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCC-----Cc
Q 029656           96 -----IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDES-----YW  164 (190)
Q Consensus        96 -----~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~-----~~  164 (190)
                           .++|+|||||+.+...   .+..+.+++|+.++.++++.|..... +++|+||+.+.+.... .+.|.     ..
T Consensus        81 ~~~L~~~v~~IiH~Aa~v~~~---~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~-~~~~~~~~~~~~  156 (249)
T PF07993_consen   81 YQELAEEVDVIIHCAASVNFN---APYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPG-TIEEKVYPEEED  156 (249)
T ss_dssp             HHHHHHH--EEEE--SS-SBS----S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TT-T--SSS-HHH--
T ss_pred             hhccccccceeeecchhhhhc---ccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCC-cccccccccccc
Confidence                 2599999999876532   24556789999999999999996554 9999999666554332 22221     11


Q ss_pred             cCCCCCCcccchhhhhHHHHhhhh
Q 029656          165 GNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       165 ~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      .........+.|   .+||+.+|+
T Consensus       157 ~~~~~~~~~~gY---~~SK~~aE~  177 (249)
T PF07993_consen  157 DLDPPQGFPNGY---EQSKWVAER  177 (249)
T ss_dssp             EEE--TTSEE-H---HHHHHHHHH
T ss_pred             cchhhccCCccH---HHHHHHHHH
Confidence            112233334577   888999997

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=99.77  E-value=5.2e-18  Score=135.09  Aligned_cols=137  Identities=24%  Similarity=0.326  Sum_probs=99.5

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc---------CCcCEEEEc
Q 029656           35 ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL---------IEVDQIYHL  104 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---------~~~d~vi~~  104 (190)
                      |+||||+||||+++++.|+++ ++ +|.+++|.....  .+..+    ....+..|+.+.+.         .++|+|||+
T Consensus         1 ilItGatG~iG~~l~~~L~~~-g~~~v~~~~~~~~~~--~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~   73 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNER-GITDILVVDNLRDGH--KFLNL----ADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQ   73 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHc-CCceEEEEecCCCch--hhhhh----hheeeeccCcchhHHHHHHhhccCCCCEEEEC
Confidence            689999999999999999999 65 788887654322  11111    11234566665421         469999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHHHH
Q 029656          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKL  184 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~sK~  184 (190)
                      |+....  ...++...+++|+.++.+++++|.+.++++|++||+++|+.... +++|+.    .+..+.+.|   +.+|.
T Consensus        74 A~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~~-~~~e~~----~~~~p~~~Y---~~sK~  143 (314)
T TIGR02197        74 GACSDT--TETDGEYMMENNYQYSKRLLDWCAEKGIPFIYASSAATYGDGEA-GFREGR----ELERPLNVY---GYSKF  143 (314)
T ss_pred             ccccCc--cccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEccHHhcCCCCC-Cccccc----CcCCCCCHH---HHHHH
Confidence            986432  34456778999999999999999998889999999999997543 455653    122344567   88899


Q ss_pred             hhhh
Q 029656          185 IGEL  188 (190)
Q Consensus       185 ~~E~  188 (190)
                      .+|+
T Consensus       144 ~~e~  147 (314)
T TIGR02197       144 LFDQ  147 (314)
T ss_pred             HHHH
Confidence            8884

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PLN02996 fatty acyl-CoA reductase

Probab=99.77  E-value=1.4e-17  Score=140.37  Aligned_cols=123  Identities=24%  Similarity=0.347  Sum_probs=93.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcC--CCeEEEEcCCCCCChh--hhh-hhhc-------------------CCceEE
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKD--NLR-KWIG-------------------HPRFEL   85 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~--~~~v~~~~r~~~~~~~--~~~-~~~~-------------------~~~~~~   85 (190)
                      ..+++|+|||||||||+++++.|+...  -.+|+++.|.......  .+. .+..                   ..++.+
T Consensus         9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~   88 (491)
T PLN02996          9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP   88 (491)
T ss_pred             hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence            488999999999999999999999762  2468888886543221  111 1100                   157899


Q ss_pred             Eecccccc-------c-----cCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CC-eEEEEecceec
Q 029656           86 IRHDVTEP-------L-----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA-RILLTSTSEVY  151 (190)
Q Consensus        86 ~~~D~~~~-------~-----~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~-~~i~vSS~~~~  151 (190)
                      +.+|+.++       .     ..++|+|||+|+.+..   ..++...+++|+.++.+++++|++. ++ ++|++||+++|
T Consensus        89 i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~---~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vy  165 (491)
T PLN02996         89 VPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNF---DERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVC  165 (491)
T ss_pred             EecccCCcCCCCChHHHHHHHHhCCCEEEECccccCC---cCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEe
Confidence            99999843       1     2369999999987653   2467788999999999999999986 45 89999999999


Q ss_pred             CCCC
Q 029656          152 GDPL  155 (190)
Q Consensus       152 ~~~~  155 (190)
                      |...
T Consensus       166 G~~~  169 (491)
T PLN02996        166 GEKS  169 (491)
T ss_pred             cCCC
Confidence            8743

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.76  E-value=2e-18  Score=134.68  Aligned_cols=132  Identities=28%  Similarity=0.398  Sum_probs=94.3

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEE----Eeccccccc-----cC--CcCE
Q 029656           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFEL----IRHDVTEPL-----LI--EVDQ  100 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~----~~~D~~~~~-----~~--~~d~  100 (190)
                      |+||||+|.||+.|++.|++.+-..+++++++.........++.   +..++.+    +-+|+.|..     +.  ++|+
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi   80 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI   80 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence            79999999999999999999944789999986544433333331   2334443    468998864     23  7999


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhh
Q 029656          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKD  179 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~  179 (190)
                      |||+|+.-.++..+.++.+.+++|+.|+.|++++|.++++ ++|++||.-                   -.+|.+.|   
T Consensus        81 VfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDK-------------------Av~Ptnvm---  138 (293)
T PF02719_consen   81 VFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDK-------------------AVNPTNVM---  138 (293)
T ss_dssp             EEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECG-------------------CSS--SHH---
T ss_pred             EEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccc-------------------cCCCCcHH---
Confidence            9999998777778999999999999999999999999998 999999821                   22344678   


Q ss_pred             hHHHHhhhh
Q 029656          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      |.||..+|+
T Consensus       139 GatKrlaE~  147 (293)
T PF02719_consen  139 GATKRLAEK  147 (293)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999986

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.75  E-value=2.7e-17  Score=143.22  Aligned_cols=144  Identities=31%  Similarity=0.342  Sum_probs=106.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHh--cCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEeccccccc----------cCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLME--NEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL----------LIE   97 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~--~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~----------~~~   97 (190)
                      |+|+||||+||||+++++.|++  . +++|.++.|+..  ...+..+.   ...+++++.+|+.+..          ..+
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~-g~~V~~l~R~~~--~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~   77 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRR-EATVHVLVRRQS--LSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGD   77 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCC-CCEEEEEECcch--HHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcC
Confidence            5799999999999999999995  5 789999998532  22222221   1247899999998842          157


Q ss_pred             cCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccch
Q 029656           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFV  176 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y  176 (190)
                      +|+|||+||.....   ......+++|+.++.+++++|++.++ ++||+||..+|+.... +++|+.++.  +..+.+.|
T Consensus        78 ~D~Vih~Aa~~~~~---~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~-~~~e~~~~~--~~~~~~~Y  151 (657)
T PRK07201         78 IDHVVHLAAIYDLT---ADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEG-VFREDDFDE--GQGLPTPY  151 (657)
T ss_pred             CCEEEECceeecCC---CCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccC-ccccccchh--hcCCCCch
Confidence            99999999865432   24566789999999999999999876 8999999999986433 455654321  12223467


Q ss_pred             hhhhHHHHhhhh
Q 029656          177 LKDGIMKLIGEL  188 (190)
Q Consensus       177 ~~~~~sK~~~E~  188 (190)
                         +.+|+.+|+
T Consensus       152 ---~~sK~~~E~  160 (657)
T PRK07201        152 ---HRTKFEAEK  160 (657)
T ss_pred             ---HHHHHHHHH
Confidence               888999986

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.74  E-value=3.4e-17  Score=143.03  Aligned_cols=133  Identities=19%  Similarity=0.209  Sum_probs=95.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEE-EEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVI-VVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~-~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      ..|+|+||||+||||++|++.|.++ +++|. ...+  -.....+..            ++   ...++|+|||+|+.+.
T Consensus       379 ~~mkiLVtGa~G~iG~~l~~~L~~~-g~~v~~~~~~--l~d~~~v~~------------~i---~~~~pd~Vih~Aa~~~  440 (668)
T PLN02260        379 PSLKFLIYGRTGWIGGLLGKLCEKQ-GIAYEYGKGR--LEDRSSLLA------------DI---RNVKPTHVFNAAGVTG  440 (668)
T ss_pred             CCceEEEECCCchHHHHHHHHHHhC-CCeEEeeccc--cccHHHHHH------------HH---HhhCCCEEEECCcccC
Confidence            3478999999999999999999998 77773 2211  001111110            00   1136899999999764


Q ss_pred             ---CcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCC------CCCCCCCCCccCCCCCCcccchhhhh
Q 029656          110 ---PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDP------LVHPQDESYWGNVNPIGMFSFVLKDG  180 (190)
Q Consensus       110 ---~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~------~~~~~~e~~~~~~~~~~~~~~y~~~~  180 (190)
                         .++++.++...+++|+.++.+++++|++.++++|++||.++|+..      ...+++|++    .+..+.+.|   |
T Consensus       441 ~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~----~~~~~~~~Y---g  513 (668)
T PLN02260        441 RPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNFATGCIFEYDAKHPEGSGIGFKEED----KPNFTGSFY---S  513 (668)
T ss_pred             CCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEEcccceecCCcccccccCCCCCcCC----CCCCCCChh---h
Confidence               334567888999999999999999999999988999999998642      123677774    222233678   8


Q ss_pred             HHHHhhhh
Q 029656          181 IMKLIGEL  188 (190)
Q Consensus       181 ~sK~~~E~  188 (190)
                      .||+.+|+
T Consensus       514 ~sK~~~E~  521 (668)
T PLN02260        514 KTKAMVEE  521 (668)
T ss_pred             HHHHHHHH
Confidence            88999996

>TIGR01746 Thioester-redct thioester reductase domain

Probab=99.74  E-value=7.1e-17  Score=130.67  Aligned_cols=148  Identities=27%  Similarity=0.335  Sum_probs=103.6

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCC--CeEEEEcCCCCCCh--hhhhhhh----------cCCceEEEecccccccc----
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSK--DNLRKWI----------GHPRFELIRHDVTEPLL----   95 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~--~~v~~~~r~~~~~~--~~~~~~~----------~~~~~~~~~~D~~~~~~----   95 (190)
                      +|+||||+||||+++++.|+++ +  .+|+++.|......  ..+....          ...++.++.+|+.++.+    
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~-g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~   79 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRR-STQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSD   79 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhC-CCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCH
Confidence            5899999999999999999998 5  67999988654221  1111100          00478999999876531    


Q ss_pred             -------CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCC
Q 029656           96 -------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (190)
Q Consensus        96 -------~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~  167 (190)
                             .++|+|||+|+....   .......+++|+.++.+++++|.+.+. +++++||.++|+.....++.|+.....
T Consensus        80 ~~~~~~~~~~d~vih~a~~~~~---~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~~  156 (367)
T TIGR01746        80 AEWERLAENVDTIVHNGALVNW---VYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIVT  156 (367)
T ss_pred             HHHHHHHhhCCEEEeCCcEecc---CCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCccccccccc
Confidence                   359999999986542   224456778999999999999998887 699999999998644333344422111


Q ss_pred             CCCCcccchhhhhHHHHhhhh
Q 029656          168 NPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       168 ~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      ........|   +.||+.+|+
T Consensus       157 ~~~~~~~~Y---~~sK~~~E~  174 (367)
T TIGR01746       157 PPPGLAGGY---AQSKWVAEL  174 (367)
T ss_pred             cccccCCCh---HHHHHHHHH
Confidence            112223456   888999885

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.73  E-value=4.3e-17  Score=129.71  Aligned_cols=150  Identities=24%  Similarity=0.272  Sum_probs=108.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh--hhhhh---------hcCCceEEEecccccccc------
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD--NLRKW---------IGHPRFELIRHDVTEPLL------   95 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~--~~~~~---------~~~~~~~~~~~D~~~~~~------   95 (190)
                      ++|++||||||+|.+++.+|+.+...+|+++.|.+.....  .+...         ....++..+.+|+..+.+      
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~   80 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT   80 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence            5799999999999999999999855699999986553321  11111         123689999999996643      


Q ss_pred             -----CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCC----cc
Q 029656           96 -----IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESY----WG  165 (190)
Q Consensus        96 -----~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~----~~  165 (190)
                           ..+|.|||+++.+..   -.+..+....|+.|+..+++.|...+. .++||||++++........+++.    ..
T Consensus        81 ~~~La~~vD~I~H~gA~Vn~---v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~  157 (382)
T COG3320          81 WQELAENVDLIIHNAALVNH---VFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPT  157 (382)
T ss_pred             HHHHhhhcceEEecchhhcc---cCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCcccccccccc
Confidence                 249999999986653   234567789999999999999998776 59999999998765443333221    11


Q ss_pred             CCCCCCcccchhhhhHHHHhhhh
Q 029656          166 NVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       166 ~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      ..........|   ++|||.+|+
T Consensus       158 ~~~~~~~~~GY---~~SKwvaE~  177 (382)
T COG3320         158 RNVGQGLAGGY---GRSKWVAEK  177 (382)
T ss_pred             ccccCccCCCc---chhHHHHHH
Confidence            11222234577   899999995

>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]

Probab=99.72  E-value=2.3e-17  Score=126.17  Aligned_cols=149  Identities=25%  Similarity=0.359  Sum_probs=118.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhc-CCCeEEEEcCCC-CCChhhhhhhhcCCceEEEecccccccc-------CCcCEEEE
Q 029656           33 MRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~-~~~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~  103 (190)
                      ++++||||.||||++.+..+... ...+.+.++.-. ......+......+...+++.|+.+...       ..+|.|||
T Consensus         7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~vih   86 (331)
T KOG0747|consen    7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDTVIH   86 (331)
T ss_pred             ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchhhhhh
Confidence            88999999999999999999997 223444433211 1112334444556899999999998743       36999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecceecCCCCCCCCC-CCCccCCCCCCcccchhhhh
Q 029656          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPLVHPQD-ESYWGNVNPIGMFSFVLKDG  180 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~~~~~~~~~~~~-e~~~~~~~~~~~~~~y~~~~  180 (190)
                      +|+......+..++.+..+.|+.++..|++.+...+ + ++|++||..|||.....+.. |.     ...+|.++|   +
T Consensus        87 faa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~-----s~~nPtnpy---A  158 (331)
T KOG0747|consen   87 FAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEA-----SLLNPTNPY---A  158 (331)
T ss_pred             hHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCcccccccccc-----ccCCCCCch---H
Confidence            999888777777888899999999999999999996 4 89999999999987766655 55     577788899   8


Q ss_pred             HHHHhhhhc
Q 029656          181 IMKLIGELG  189 (190)
Q Consensus       181 ~sK~~~E~~  189 (190)
                      .+|+++|+.
T Consensus       159 asKaAaE~~  167 (331)
T KOG0747|consen  159 ASKAAAEML  167 (331)
T ss_pred             HHHHHHHHH
Confidence            889999973

>PRK06197 short chain dehydrogenase; Provisional

Probab=99.72  E-value=1.1e-16  Score=127.45  Aligned_cols=152  Identities=18%  Similarity=0.100  Sum_probs=101.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc-----------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~-----------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.|+.+........+.   ....+.++.+|+.|...           
T Consensus        14 ~~~k~vlItGas~gIG~~~a~~l~~~-G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   92 (306)
T PRK06197         14 QSGRVAVVTGANTGLGYETAAALAAK-GAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA   92 (306)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence            37799999999999999999999999 8899999886544333222222   23468889999998642           


Q ss_pred             -CCcCEEEEccCCCCCcc--cccCchhHHHHHHHHHHH----HHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCC
Q 029656           96 -IEVDQIYHLACPASPIF--YKYNPVKTIKTNVIGTLN----MLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNV  167 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~--~~~~~~~~~~~n~~~~~~----l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~  167 (190)
                       .++|+||||||...+..  ..+..+..+++|+.++..    +++.+++.+. ++|++||...+.... ...++..+  .
T Consensus        93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~-~~~~~~~~--~  169 (306)
T PRK06197         93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAA-IHFDDLQW--E  169 (306)
T ss_pred             CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCC-CCccccCc--c
Confidence             35999999999654322  234556789999999554    5555555554 999999987443111 11222211  1


Q ss_pred             CCCCcccchhhhhHHHHhhhh
Q 029656          168 NPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       168 ~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      .++.+...|   +.||++.+.
T Consensus       170 ~~~~~~~~Y---~~SK~a~~~  187 (306)
T PRK06197        170 RRYNRVAAY---GQSKLANLL  187 (306)
T ss_pred             cCCCcHHHH---HHHHHHHHH
Confidence            233333455   888987653

>PRK05854 short chain dehydrogenase; Provisional

Probab=99.71  E-value=1.7e-16  Score=126.87  Aligned_cols=150  Identities=15%  Similarity=0.048  Sum_probs=105.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc-----------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||+++||+++++.|+++ |++|++..|+.+.....+.++.   ....+.++.+|+.+...           
T Consensus        12 l~gk~~lITGas~GIG~~~a~~La~~-G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~   90 (313)
T PRK05854         12 LSGKRAVVTGASDGLGLGLARRLAAA-GAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE   90 (313)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            47899999999999999999999999 8999999987654444333332   23468899999998632           


Q ss_pred             -CCcCEEEEccCCCCCcc---cccCchhHHHHHHHHHHHHHHHHH----HcCCeEEEEecceecCC-CCCCCCCCCCccC
Q 029656           96 -IEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYGD-PLVHPQDESYWGN  166 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~vSS~~~~~~-~~~~~~~e~~~~~  166 (190)
                       .++|+||||||......   ..+..+..+++|+.+...+.+.+.    +...++|++||...+.. .....+.++    
T Consensus        91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~~----  166 (313)
T PRK05854         91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNWE----  166 (313)
T ss_pred             CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCccccccc----
Confidence             35999999999765322   335567789999999988877664    22348999999765432 111122222    


Q ss_pred             CCCCCcccchhhhhHHHHhhhh
Q 029656          167 VNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       167 ~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                       .++.....|   +.||++.+.
T Consensus       167 -~~~~~~~~Y---~~SK~a~~~  184 (313)
T PRK05854        167 -RSYAGMRAY---SQSKIAVGL  184 (313)
T ss_pred             -ccCcchhhh---HHHHHHHHH
Confidence             233333455   888987653

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.71  E-value=8.9e-17  Score=123.09  Aligned_cols=147  Identities=29%  Similarity=0.333  Sum_probs=122.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh-h--hhh--hcCCceEEEeccccccc-------cCCc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-L--RKW--IGHPRFELIRHDVTEPL-------LIEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-~--~~~--~~~~~~~~~~~D~~~~~-------~~~~   98 (190)
                      ++|+.||||-||.-|.+|++.|++. |++|..+.|+....... +  .+.  .+..++.+..+|++|..       ..++
T Consensus         1 ~~K~ALITGITGQDGsYLa~lLLek-GY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~P   79 (345)
T COG1089           1 MGKVALITGITGQDGSYLAELLLEK-GYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQP   79 (345)
T ss_pred             CCceEEEecccCCchHHHHHHHHhc-CcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCc
Confidence            3588999999999999999999999 99999998874433221 1  111  22346889999999974       3479


Q ss_pred             CEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC---CeEEEEecceecCCCCCCCCCCCCccCCCCCCcccc
Q 029656           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSF  175 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~  175 (190)
                      |-|+|+|+...+..+.+.|+.+.+++..|+.+++++.+..+   +|+...||+..||.....|.+|.     +|+.|.++
T Consensus        80 dEIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~-----TPFyPrSP  154 (345)
T COG1089          80 DEIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSP  154 (345)
T ss_pred             hhheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccC-----CCCCCCCH
Confidence            99999999888888889999999999999999999998764   38999999999998888899999     89999999


Q ss_pred             hhhhhHHHHhh
Q 029656          176 VLKDGIMKLIG  186 (190)
Q Consensus       176 y~~~~~sK~~~  186 (190)
                      |   +.+|+.+
T Consensus       155 Y---AvAKlYa  162 (345)
T COG1089         155 Y---AVAKLYA  162 (345)
T ss_pred             H---HHHHHHH
Confidence            9   6669875

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=99.70  E-value=2.1e-16  Score=126.78  Aligned_cols=121  Identities=14%  Similarity=0.138  Sum_probs=90.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------CC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      .+++++||||+|+||+++++.|+++ |++|+++.|+..........+. ....+.++.+|+.+...            .+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~   83 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKR-GWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKP   83 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999999999 7999999886544333333321 23468889999998642            24


Q ss_pred             cCEEEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHHHH----cC---CeEEEEecceecC
Q 029656           98 VDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG---ARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~---~~~i~vSS~~~~~  152 (190)
                      +|+||||||.....     .+.+.++..+++|+.++.++++++..    .+   .|+|++||...+.
T Consensus        84 iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~  150 (322)
T PRK07453         84 LDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANP  150 (322)
T ss_pred             ccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCc
Confidence            99999999965431     12334667899999999998877753    22   3999999987653

>PLN02503 fatty acyl-CoA reductase 2

Probab=99.69  E-value=7.4e-16  Score=131.76  Aligned_cols=131  Identities=23%  Similarity=0.290  Sum_probs=98.2

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCC--CeEEEEcCCCCCCh--hhhh-hhh------------c-------CCceE
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEK--NEVIVVDNYFTGSK--DNLR-KWI------------G-------HPRFE   84 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~--~~v~~~~r~~~~~~--~~~~-~~~------------~-------~~~~~   84 (190)
                      +..+++|+|||||||||++|++.|++...  .+|+++.|......  +.+. .+.            +       ..++.
T Consensus       116 f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~  195 (605)
T PLN02503        116 FLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLV  195 (605)
T ss_pred             hhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEE
Confidence            45789999999999999999999998632  47888888644321  1111 110            0       24788


Q ss_pred             EEecccccccc-----------CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEecceec
Q 029656           85 LIRHDVTEPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVY  151 (190)
Q Consensus        85 ~~~~D~~~~~~-----------~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS~~~~  151 (190)
                      .+.+|+.++.+           .++|+|||+|+....   ..+++..+++|+.++.+++++|++.+ . ++||+||+++|
T Consensus       196 ~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f---~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVy  272 (605)
T PLN02503        196 PVVGNVCESNLGLEPDLADEIAKEVDVIINSAANTTF---DERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVN  272 (605)
T ss_pred             EEEeeCCCcccCCCHHHHHHHHhcCCEEEECcccccc---ccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceee
Confidence            99999998631           359999999986652   34677889999999999999998875 4 79999999999


Q ss_pred             CCCCCCCCCCCC
Q 029656          152 GDPLVHPQDESY  163 (190)
Q Consensus       152 ~~~~~~~~~e~~  163 (190)
                      |...+ .+.|..
T Consensus       273 G~~~G-~i~E~~  283 (605)
T PLN02503        273 GQRQG-RIMEKP  283 (605)
T ss_pred             cCCCC-eeeeee
Confidence            97543 444543

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.68  E-value=1e-15  Score=125.91  Aligned_cols=122  Identities=24%  Similarity=0.293  Sum_probs=91.3

Q ss_pred             hcccccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh--hhhh-hcCCceEEEecccccccc-----C
Q 029656           25 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN--LRKW-IGHPRFELIRHDVTEPLL-----I   96 (190)
Q Consensus        25 ~~~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~--~~~~-~~~~~~~~~~~D~~~~~~-----~   96 (190)
                      +......+++|+||||+|+||+++++.|+++ |++|+++.|+.......  .... ....++.++.+|++|.+.     .
T Consensus        53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~-G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~  131 (390)
T PLN02657         53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRR-GYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLF  131 (390)
T ss_pred             ccccCCCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHH
Confidence            3344457899999999999999999999999 89999999875432110  0001 112468899999998642     2


Q ss_pred             ----CcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecC
Q 029656           97 ----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ----~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~  152 (190)
                          ++|+||||++....     .....+++|+.++.++++++++.++ ++|++||.+++.
T Consensus       132 ~~~~~~D~Vi~~aa~~~~-----~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~  187 (390)
T PLN02657        132 SEGDPVDVVVSCLASRTG-----GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQK  187 (390)
T ss_pred             HhCCCCcEEEECCccCCC-----CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccC
Confidence                59999999874321     1234578899999999999999987 899999988764

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=99.68  E-value=5.7e-16  Score=122.01  Aligned_cols=123  Identities=18%  Similarity=0.206  Sum_probs=86.7

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCCc--c
Q 029656           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI--F  112 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~~--~  112 (190)
                      |+||||+||||+++++.|+++ +++|+++.|+.........     ..+.....+.....+.++|+|||+||.....  +
T Consensus         1 vlVtGatG~iG~~l~~~L~~~-g~~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~D~Vvh~a~~~~~~~~~   74 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKD-GHEVTILTRSPPAGANTKW-----EGYKPWAPLAESEALEGADAVINLAGEPIADKRW   74 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHc-CCEEEEEeCCCCCCCcccc-----eeeecccccchhhhcCCCCEEEECCCCCcccccC
Confidence            689999999999999999999 8999999997665432110     0111111112223446799999999865432  2


Q ss_pred             cccCchhHHHHHHHHHHHHHHHHHHcCC---eEEEEecceecCCCCCCCCCCCC
Q 029656          113 YKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESY  163 (190)
Q Consensus       113 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~vSS~~~~~~~~~~~~~e~~  163 (190)
                      ....+...+++|+.++.+++++|+++++   ++|++||.++|+.....+++|+.
T Consensus        75 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~  128 (292)
T TIGR01777        75 TEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEED  128 (292)
T ss_pred             CHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCccc
Confidence            2234556789999999999999999875   35556666789976666788874

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK05717 oxidoreductase; Validated

Probab=99.67  E-value=1e-15  Score=118.77  Aligned_cols=120  Identities=17%  Similarity=0.093  Sum_probs=89.1

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------C
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~   96 (190)
                      .+++++++||||+|+||+++++.|+++ |++|++++|+..........+  ...+.++.+|+.+...            .
T Consensus         7 ~~~~k~vlItG~sg~IG~~~a~~l~~~-g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   83 (255)
T PRK05717          7 GHNGRVALVTGAARGIGLGIAAWLIAE-GWQVVLADLDRERGSKVAKAL--GENAWFIAMDVADEAQVAAGVAEVLGQFG   83 (255)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHHc--CCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            357899999999999999999999999 889999887644332222222  2367889999998632            2


Q ss_pred             CcCEEEEccCCCCCcc------cccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceec
Q 029656           97 EVDQIYHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~  151 (190)
                      ++|+|||+||...+..      ..+.++..+++|+.++.++++++.+    .+.++|++||...+
T Consensus        84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~  148 (255)
T PRK05717         84 RLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR  148 (255)
T ss_pred             CCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc
Confidence            4899999999754321      1223457899999999999999853    23489999986644

>PRK07774 short chain dehydrogenase; Provisional

Probab=99.67  E-value=7.6e-16  Score=118.87  Aligned_cols=122  Identities=20%  Similarity=0.180  Sum_probs=89.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|...........+.. ...+.++.+|+.+...            .
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~-g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALARE-GASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFG   82 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            36789999999999999999999999 89999999865433222222221 2357788999998742            2


Q ss_pred             CcCEEEEccCCCCCc-------ccccCchhHHHHHHHHHHHHHHHHHHc----C-CeEEEEecceecC
Q 029656           97 EVDQIYHLACPASPI-------FYKYNPVKTIKTNVIGTLNMLGLAKRV----G-ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~-------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~i~vSS~~~~~  152 (190)
                      .+|+|||+||.....       ...+..+..+++|+.++.++++++...    + .++|++||...|.
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~  150 (250)
T PRK07774         83 GIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL  150 (250)
T ss_pred             CCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC
Confidence            589999999965321       112234457899999999998887643    2 3899999977653

>PRK06196 oxidoreductase; Provisional

Probab=99.67  E-value=1.5e-15  Score=121.48  Aligned_cols=148  Identities=18%  Similarity=0.090  Sum_probs=99.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.|+.+........+   ..+.++.+|+.|...            .+
T Consensus        24 l~~k~vlITGasggIG~~~a~~L~~~-G~~Vv~~~R~~~~~~~~~~~l---~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~   99 (315)
T PRK06196         24 LSGKTAIVTGGYSGLGLETTRALAQA-GAHVIVPARRPDVAREALAGI---DGVEVVMLDLADLESVRAFAERFLDSGRR   99 (315)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh---hhCeEEEccCCCHHHHHHHHHHHHhcCCC
Confidence            47799999999999999999999999 899999998754433322222   247889999998642            35


Q ss_pred             cCEEEEccCCCCCcc--cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceecCCCCCCCCCCCCccCCCCC
Q 029656           98 VDQIYHLACPASPIF--YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVYGDPLVHPQDESYWGNVNPI  170 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~  170 (190)
                      +|+||||||......  ..+..+..+++|+.++.++++.+    ++.+ .++|++||.......    ...+......++
T Consensus       100 iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~----~~~~~~~~~~~~  175 (315)
T PRK06196        100 IDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSP----IRWDDPHFTRGY  175 (315)
T ss_pred             CCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCC----CCccccCccCCC
Confidence            999999999654321  22345677999999987776654    4444 499999997543211    111111111233


Q ss_pred             CcccchhhhhHHHHhhhh
Q 029656          171 GMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       171 ~~~~~y~~~~~sK~~~E~  188 (190)
                      .+...|   +.||+..+.
T Consensus       176 ~~~~~Y---~~SK~a~~~  190 (315)
T PRK06196        176 DKWLAY---GQSKTANAL  190 (315)
T ss_pred             ChHHHH---HHHHHHHHH
Confidence            333345   888987653

>PRK06194 hypothetical protein; Provisional

Probab=99.67  E-value=1e-15  Score=120.66  Aligned_cols=122  Identities=11%  Similarity=0.023  Sum_probs=88.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|+.|.+.            .
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g   82 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAAL-GMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFG   82 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            35689999999999999999999999 89999998865443333333322 3467889999998632            2


Q ss_pred             CcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcC-------CeEEEEecceecC
Q 029656           97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVG-------ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~-------~~~i~vSS~~~~~  152 (190)
                      ++|+|||+||.......    .+.+...+++|+.++.++++++    .+.+       .++|++||...+.
T Consensus        83 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~  153 (287)
T PRK06194         83 AVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLL  153 (287)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc
Confidence            48999999997654221    2334456899999999877764    3322       3799999977664

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.66  E-value=2.1e-15  Score=118.24  Aligned_cols=115  Identities=21%  Similarity=0.257  Sum_probs=85.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCcC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD   99 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~d   99 (190)
                      .++++||||+|+||+++++.|+++ |+.|+++.|+.+.... +.... ..++.++.+|++|...            .++|
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~-g~~v~~~~r~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   78 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLAR-GDRVAATVRRPDALDD-LKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRID   78 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH-HHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            378999999999999999999999 8899999886432221 11111 2468889999998642            3589


Q ss_pred             EEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecce
Q 029656          100 QIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSE  149 (190)
Q Consensus       100 ~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~  149 (190)
                      +|||+||.......    .+.....+++|+.++.++++++    ++.+. ++|++||..
T Consensus        79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~  137 (276)
T PRK06482         79 VVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEG  137 (276)
T ss_pred             EEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcc
Confidence            99999997653321    2234567889999999999887    44454 899999964

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=99.66  E-value=9e-16  Score=118.98  Aligned_cols=143  Identities=21%  Similarity=0.316  Sum_probs=99.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-c-----c-CCcCEEEE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-L-----L-IEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~-----~-~~~d~vi~  103 (190)
                      .+|+|+||||+|+||+.+++.|+++ +++|+++.|+.........   ....+.++.+|+.+. .     + .++|+|||
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~-g~~V~~~~R~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~   91 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAK-GFAVKAGVRDVDKAKTSLP---QDPSLQIVRADVTEGSDKLVEAIGDDSDAVIC   91 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhcc---cCCceEEEEeeCCCCHHHHHHHhhcCCCEEEE
Confidence            4689999999999999999999998 8999998886543222111   123688899999873 1     2 36999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHH
Q 029656          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIM  182 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~s  182 (190)
                      ++|....    .++...+++|..++.++++++++.+. |+|++||..+|+...+.+..+.       +...+.|..+..+
T Consensus        92 ~~g~~~~----~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~~~-------~~~~~~~~~~~~~  160 (251)
T PLN00141         92 ATGFRRS----FDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQILNPA-------YIFLNLFGLTLVA  160 (251)
T ss_pred             CCCCCcC----CCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccccCcc-------hhHHHHHHHHHHH
Confidence            9875321    12233457888999999999998886 8999999999985433232221       1112334444566


Q ss_pred             HHhhhh
Q 029656          183 KLIGEL  188 (190)
Q Consensus       183 K~~~E~  188 (190)
                      |...|.
T Consensus       161 k~~~e~  166 (251)
T PLN00141        161 KLQAEK  166 (251)
T ss_pred             HHHHHH
Confidence            776663

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.65  E-value=2.4e-15  Score=115.99  Aligned_cols=122  Identities=16%  Similarity=0.082  Sum_probs=90.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.|+..........+.....+.++.+|+.+...            .+
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAE-GARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGS   81 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            36789999999999999999999999 889999999765444333333223468899999998643            25


Q ss_pred             cCEEEEccCCCCCcc-----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceecC
Q 029656           98 VDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~~  152 (190)
                      +|+|||++|......     ..+.++..+++|+.++..+++.+..    .+. ++|++||...+.
T Consensus        82 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~  146 (251)
T PRK07231         82 VDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLR  146 (251)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcC
Confidence            899999998643221     2233556799999998887776643    443 899999977655

>PLN02253 xanthoxin dehydrogenase

Probab=99.65  E-value=2.3e-15  Score=118.27  Aligned_cols=119  Identities=23%  Similarity=0.153  Sum_probs=88.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+....++.++++|+.|...            .+
T Consensus        16 l~~k~~lItGas~gIG~~la~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~   94 (280)
T PLN02253         16 LLGKVALVTGGATGIGESIVRLFHKH-GAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGT   94 (280)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            46799999999999999999999999 899999988654333323333223468899999998642            25


Q ss_pred             cCEEEEccCCCCCc---c---cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecce
Q 029656           98 VDQIYHLACPASPI---F---YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSE  149 (190)
Q Consensus        98 ~d~vi~~ag~~~~~---~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~  149 (190)
                      +|+||||||.....   .   ..+.++..+++|+.++.++++++..    .+ .++|++||..
T Consensus        95 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~  157 (280)
T PLN02253         95 LDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVA  157 (280)
T ss_pred             CCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChh
Confidence            99999999965321   1   1234567899999999998887753    22 3789998865

>CHL00194 ycf39 Ycf39; Provisional

Probab=99.65  E-value=1.4e-15  Score=121.80  Aligned_cols=106  Identities=20%  Similarity=0.270  Sum_probs=84.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~  107 (190)
                      |+|+||||+||||+++++.|+++ |++|+++.|+..... .+.    ..+++++.+|+.|..     +.++|+|||+++.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~-g~~V~~l~R~~~~~~-~l~----~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~   74 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDE-GYQVRCLVRNLRKAS-FLK----EWGAELVYGDLSLPETLPPSFKGVTAIIDASTS   74 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC-CCeEEEEEcChHHhh-hHh----hcCCEEEECCCCCHHHHHHHHCCCCEEEECCCC
Confidence            58999999999999999999999 899999998643221 111    236889999999864     4579999999753


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecce
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE  149 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~  149 (190)
                      .     ..++...+++|+.++.+++++|++.++ |+|++||.+
T Consensus        75 ~-----~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~  112 (317)
T CHL00194         75 R-----PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILN  112 (317)
T ss_pred             C-----CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEecccc
Confidence            2     123445778899999999999999997 899999854

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=99.64  E-value=2.1e-15  Score=116.43  Aligned_cols=122  Identities=17%  Similarity=0.175  Sum_probs=94.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC--CceEEEecccccccc------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH--PRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||++.||.++++.|+++ |++++++.|+.+.......++...  ..++.+.+|+++...            
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~-g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~   82 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARR-GYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG   82 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence            46789999999999999999999999 899999999877776666655443  467889999998642            


Q ss_pred             CCcCEEEEccCCCCCc-ccc---cCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029656           96 IEVDQIYHLACPASPI-FYK---YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~-~~~---~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      ..+|++|||||..... +.+   +..++.+++|+.++..+.++.    .+++. +||.++|...|-
T Consensus        83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~  148 (265)
T COG0300          83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLI  148 (265)
T ss_pred             CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcC
Confidence            2599999999976643 222   334467999999987776555    44554 899999977554

>PRK06180 short chain dehydrogenase; Provisional

Probab=99.64  E-value=5.6e-15  Score=116.07  Aligned_cols=119  Identities=16%  Similarity=0.035  Sum_probs=86.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      ++++++||||+|+||+++++.|+++ |++|+++.|+.+.... +... ...++..+.+|+.|.+.            .++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~-G~~V~~~~r~~~~~~~-l~~~-~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~   79 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAA-GHRVVGTVRSEAARAD-FEAL-HPDRALARLLDVTDFDAIDAVVADAEATFGPI   79 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhC-cCEEEEEeCCHHHHHH-HHhh-cCCCeeEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            5688999999999999999999999 8999999986543221 1111 12367888999998642            258


Q ss_pred             CEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029656           99 DQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      |+|||+||........    +.....+++|+.++.++++++.    +.+. ++|++||...+.
T Consensus        80 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~  142 (277)
T PRK06180         80 DVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLI  142 (277)
T ss_pred             CEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccC
Confidence            9999999975432222    2234568999999999998853    3343 899999976543

>PRK09186 flagellin modification protein A; Provisional

Probab=99.64  E-value=5.6e-15  Score=114.39  Aligned_cols=122  Identities=20%  Similarity=0.211  Sum_probs=85.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc-----------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+........+.   ....+.++.+|+.|.+.           
T Consensus         2 ~~~k~vlItGas~giG~~~a~~l~~~-g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~   80 (256)
T PRK09186          2 LKGKTILITGAGGLIGSALVKAILEA-GGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEK   80 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence            46799999999999999999999999 8899999887654433333321   12356677899998642           


Q ss_pred             -CCcCEEEEccCCCCC----cc---cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029656           96 -IEVDQIYHLACPASP----IF---YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~----~~---~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                       ..+|+|||||+....    ..   ..+.....+++|+.++..+++++    ++.+. ++|++||...+.
T Consensus        81 ~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~  150 (256)
T PRK09186         81 YGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVV  150 (256)
T ss_pred             cCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhc
Confidence             238999999974321    11   11234456888988887666555    34454 899999976543

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=99.64  E-value=5.6e-15  Score=114.76  Aligned_cols=122  Identities=20%  Similarity=0.111  Sum_probs=89.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||.++++.|+++ |++|+++.|+....+.....+.. ..++.++.+|+.|...            .
T Consensus        10 ~~~k~ilItGa~g~IG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~   88 (259)
T PRK08213         10 LSGKTALVTGGSRGLGLQIAEALGEA-GARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFG   88 (259)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46799999999999999999999998 88999998865433322222221 2367889999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc-----CC-eEEEEecceecC
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-----GA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~-----~~-~~i~vSS~~~~~  152 (190)
                      .+|+|||+||......    ..+..++.+++|+.++.++++++...     +. ++|++||...+.
T Consensus        89 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~  154 (259)
T PRK08213         89 HVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLG  154 (259)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhcc
Confidence            5899999998643221    12234567889999999999987554     44 899999976544

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.64  E-value=3.1e-15  Score=116.16  Aligned_cols=121  Identities=18%  Similarity=0.023  Sum_probs=87.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++|||++|+||+++++.|+++ |++|+++.|+.+........+.. ...+.++++|+.+...            .
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   83 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARA-GAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFG   83 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            35789999999999999999999999 88999999876544433333322 2357788999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHH----HHHHHHHH-HHcCC-eEEEEecceec
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIG----TLNMLGLA-KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~----~~~l~~~~-~~~~~-~~i~vSS~~~~  151 (190)
                      .+|+||||||......    ..+..+..+++|+.+    +..+++.+ +..+. ++|++||...+
T Consensus        84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~  148 (262)
T PRK13394         84 SVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSH  148 (262)
T ss_pred             CCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhc
Confidence            4899999999754321    122345668899999    45556666 55555 89999996543

>PRK07806 short chain dehydrogenase; Provisional

Probab=99.64  E-value=2.8e-15  Score=115.62  Aligned_cols=117  Identities=16%  Similarity=0.130  Sum_probs=86.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh-hhhhc-CCceEEEecccccccc------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWIG-HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~-~~~~~-~~~~~~~~~D~~~~~~------------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.|+.......+ ..+.. ..++.++.+|+.+.+.            
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~-G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGA-GAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEF   82 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHC-CCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            35689999999999999999999999 889988888643222221 11111 2357889999998642            


Q ss_pred             CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029656           96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      .++|+|||+||....  ....+...+++|+.++.++++.+.+.   +.++|++||..
T Consensus        83 ~~~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~  137 (248)
T PRK07806         83 GGLDALVLNASGGME--SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQ  137 (248)
T ss_pred             CCCcEEEECCCCCCC--CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCch
Confidence            258999999985432  22345667899999999999999764   23899999954

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=99.64  E-value=5.5e-15  Score=111.59  Aligned_cols=117  Identities=19%  Similarity=0.044  Sum_probs=92.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      .+|.++||||++.||.++++.|.+. |++|++..|+.+..+....++.+ ..+..+..|++|...            .++
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~-G~~vvl~aRR~drL~~la~~~~~-~~~~~~~~DVtD~~~~~~~i~~~~~~~g~i   82 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEA-GAKVVLAARREERLEALADEIGA-GAALALALDVTDRAAVEAAIEALPEEFGRI   82 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHC-CCeEEEEeccHHHHHHHHHhhcc-CceEEEeeccCCHHHHHHHHHHHHHhhCcc
Confidence            5688999999999999999999999 89999999987766655555543 578899999999742            359


Q ss_pred             CEEEEccCCCCCcc-c---ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecce
Q 029656           99 DQIYHLACPASPIF-Y---KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~~-~---~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~  149 (190)
                      |++|||||..-... .   .++++..+++|+.|..+..++.    .+++. .+|.+||..
T Consensus        83 DiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiA  142 (246)
T COG4221          83 DILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIA  142 (246)
T ss_pred             cEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccc
Confidence            99999999765422 1   2345667999999999888776    33443 999999966

>PRK08263 short chain dehydrogenase; Provisional

Probab=99.63  E-value=4.3e-15  Score=116.54  Aligned_cols=119  Identities=17%  Similarity=0.125  Sum_probs=88.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      ++++++||||+|+||+++++.|+++ |++|++++|+...........  ...+..+++|+.+...            .++
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~-g~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   78 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALER-GDRVVATARDTATLADLAEKY--GDRLLPLALDVTDRAAVFAAVETAVEHFGRL   78 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhc--cCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5688999999999999999999999 899999988644322211111  2367888999998632            358


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029656           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      |+||||||......    ..+...+.+++|+.++.++++.+    ++.+. ++|++||...+.
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~  141 (275)
T PRK08263         79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGIS  141 (275)
T ss_pred             CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcC
Confidence            99999999765322    22345667999999998888776    44454 899999977654

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.63  E-value=3.5e-15  Score=125.97  Aligned_cols=120  Identities=13%  Similarity=0.155  Sum_probs=92.2

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh----------cCCceEEEeccccccc----
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----------GHPRFELIRHDVTEPL----   94 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~D~~~~~----   94 (190)
                      ...+++++||||+|+||+++++.|+++ |++|+++.|+..........+.          ...++.++.+|+.+.+    
T Consensus        77 ~~~gKvVLVTGATGgIG~aLAr~LLk~-G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~  155 (576)
T PLN03209         77 TKDEDLAFVAGATGKVGSRTVRELLKL-GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP  155 (576)
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH
Confidence            346789999999999999999999999 8999999987554332222111          0135788999999864    


Q ss_pred             -cCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceec
Q 029656           95 -LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY  151 (190)
Q Consensus        95 -~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~  151 (190)
                       +.++|+|||++|.....  ..+....+++|+.++.++++++...++ |||++||.+++
T Consensus       156 aLggiDiVVn~AG~~~~~--v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~  212 (576)
T PLN03209        156 ALGNASVVICCIGASEKE--VFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTN  212 (576)
T ss_pred             HhcCCCEEEEcccccccc--ccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhc
Confidence             45799999999864321  123456789999999999999998886 99999997753

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=99.63  E-value=3.8e-15  Score=114.79  Aligned_cols=121  Identities=25%  Similarity=0.165  Sum_probs=90.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+..........+.. ...+.++.+|+.|...            .
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAAD-GAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFG   82 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            36789999999999999999999999 88999999975443333333322 2358889999998632            2


Q ss_pred             CcCEEEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029656           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                      .+|+|||++|...+.    ...+.+...+++|+.++.++++.+.    +.+. ++|++||...+
T Consensus        83 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~  146 (251)
T PRK12826         83 RLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGP  146 (251)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhh
Confidence            589999999866541    1223445678999999999988873    3343 89999997655

>PRK07024 short chain dehydrogenase; Provisional

Probab=99.63  E-value=4.1e-15  Score=115.54  Aligned_cols=119  Identities=12%  Similarity=0.066  Sum_probs=86.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCcC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD   99 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~d   99 (190)
                      +++++||||+|+||+++++.|+++ |++|++++|+.+........+....++.++.+|+++.+.            ..+|
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id   80 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQ-GATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPD   80 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence            478999999999999999999999 889999998754433222222112268899999998632            2489


Q ss_pred             EEEEccCCCCCccc-----ccCchhHHHHHHHHHHHHHHH----HHHcCC-eEEEEecceec
Q 029656          100 QIYHLACPASPIFY-----KYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVY  151 (190)
Q Consensus       100 ~vi~~ag~~~~~~~-----~~~~~~~~~~n~~~~~~l~~~----~~~~~~-~~i~vSS~~~~  151 (190)
                      +|||+||.......     .+..+..+++|+.++.++++.    +++.+. ++|++||...+
T Consensus        81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~  142 (257)
T PRK07024         81 VVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGV  142 (257)
T ss_pred             EEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhc
Confidence            99999996543211     123556799999999987764    444544 89999986643

>PRK07890 short chain dehydrogenase; Provisional

Probab=99.63  E-value=5.7e-15  Score=114.47  Aligned_cols=121  Identities=16%  Similarity=0.120  Sum_probs=90.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ..++.++.+|+++.+.            .
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARA-GADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFG   81 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999999 88999999876543333332221 2467889999998642            3


Q ss_pred             CcCEEEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceec
Q 029656           97 EVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~  151 (190)
                      ++|+|||+||.....     ...+.++..+++|+.++..+++++..    .+.++|++||...+
T Consensus        82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~  145 (258)
T PRK07890         82 RVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLR  145 (258)
T ss_pred             CccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhc
Confidence            589999999864321     12234556799999999999988864    23489999996543

>PRK12827 short chain dehydrogenase; Provisional

Probab=99.63  E-value=1.2e-14  Score=111.79  Aligned_cols=122  Identities=20%  Similarity=0.138  Sum_probs=89.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh----h-cCCceEEEecccccccc---------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW----I-GHPRFELIRHDVTEPLL---------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~----~-~~~~~~~~~~D~~~~~~---------   95 (190)
                      +++|+++||||+|+||+++++.|+++ |++|+++.|...........+    . ....+.++.+|+.+...         
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   82 (249)
T PRK12827          4 LDSRRVLITGGSGGLGRAIAVRLAAD-GADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGV   82 (249)
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHC-CCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHH
Confidence            36789999999999999999999999 888988776543333222221    1 12468889999998642         


Q ss_pred             ---CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH-----HcCC-eEEEEecceecC
Q 029656           96 ---IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK-----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ---~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~-----~~~~-~~i~vSS~~~~~  152 (190)
                         .++|+|||+||......    ..+.....+++|+.++.++++++.     +.+. ++|++||...+.
T Consensus        83 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~  152 (249)
T PRK12827         83 EEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVR  152 (249)
T ss_pred             HHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcC
Confidence               35899999999765321    122345678999999999999887     3443 899999977554

>PRK07814 short chain dehydrogenase; Provisional

Probab=99.62  E-value=7.2e-15  Score=114.56  Aligned_cols=119  Identities=13%  Similarity=0.117  Sum_probs=89.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||.++++.|+++ |++|++++|+.+........+.. ..++.++.+|+.++..            .
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~-G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   86 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEA-GADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFG   86 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999 88999999975443332222211 3468889999998743            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH-----cC-CeEEEEecce
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR-----VG-ARILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~-----~~-~~~i~vSS~~  149 (190)
                      ++|+|||+||......    ..+.....+++|+.++.++++++..     .+ .++|++||..
T Consensus        87 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~  149 (263)
T PRK07814         87 RLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTM  149 (263)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcccc
Confidence            6899999998644321    1234556799999999999998863     23 3899999854

>PRK05866 short chain dehydrogenase; Provisional

Probab=99.62  E-value=1.2e-14  Score=115.32  Aligned_cols=122  Identities=16%  Similarity=0.104  Sum_probs=88.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------cC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ...+.++.+|+.|.+            ..
T Consensus        38 ~~~k~vlItGasggIG~~la~~La~~-G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  116 (293)
T PRK05866         38 LTGKRILLTGASSGIGEAAAEQFARR-GATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIG  116 (293)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46789999999999999999999999 89999999975443332222211 245778899999864            23


Q ss_pred             CcCEEEEccCCCCCcccc------cCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029656           97 EVDQIYHLACPASPIFYK------YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~~------~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      ++|+||||||........      +..+..+++|+.++.++++.+.    +.+. ++|++||.+.+.
T Consensus       117 ~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  183 (293)
T PRK05866        117 GVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLS  183 (293)
T ss_pred             CCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcC
Confidence            699999999976432211      2234578999999888877653    4444 899999966543

>PRK12746 short chain dehydrogenase; Provisional

Probab=99.62  E-value=8.6e-15  Score=113.29  Aligned_cols=121  Identities=17%  Similarity=0.129  Sum_probs=87.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhhc-CCceEEEecccccccc-------------
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-------------   95 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~-------------   95 (190)
                      ++++++|||++|+||+++++.|+++ |+.|.++ .|+.+........+.. ...+.++.+|+.|...             
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~-G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~   83 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLAND-GALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQ   83 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence            5689999999999999999999999 7888775 5544332222222221 2467889999998642             


Q ss_pred             -----CCcCEEEEccCCCCCcccccC----chhHHHHHHHHHHHHHHHHHHc--C-CeEEEEecceecC
Q 029656           96 -----IEVDQIYHLACPASPIFYKYN----PVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVYG  152 (190)
Q Consensus        96 -----~~~d~vi~~ag~~~~~~~~~~----~~~~~~~n~~~~~~l~~~~~~~--~-~~~i~vSS~~~~~  152 (190)
                           .++|+|||+||........+.    ....+++|+.++.++++.+.+.  . .++|++||..++.
T Consensus        84 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~  152 (254)
T PRK12746         84 IRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRL  152 (254)
T ss_pred             cccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcC
Confidence                 258999999997554322222    2456789999999999988653  2 3899999977654

>PRK06138 short chain dehydrogenase; Provisional

Probab=99.62  E-value=7.1e-15  Score=113.47  Aligned_cols=121  Identities=17%  Similarity=0.074  Sum_probs=89.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+........+....++.++++|+.|...            .+
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~   81 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFARE-GARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGR   81 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHC-CCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            36789999999999999999999999 899999998755433333333223468899999998642            36


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      +|+|||++|......    ..+..+..+++|+.++.++.+.+    ++.+. ++|++||...+
T Consensus        82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~  144 (252)
T PRK06138         82 LDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLAL  144 (252)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhc
Confidence            999999999654322    12234456899999998776655    44454 89999997643

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.61  E-value=1.5e-14  Score=111.10  Aligned_cols=121  Identities=19%  Similarity=0.138  Sum_probs=88.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc------------C
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~------------~   96 (190)
                      ++++++||||+|+||+++++.|+++ |+.|+++.|+.......+....  ...++.++.+|+.+...            .
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~   83 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARA-GADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFG   83 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcC
Confidence            5689999999999999999999999 8888776665443322222211  13468889999998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      ++|+|||+||......    ..+.....+++|+.++.++++.+    ++.+. ++|++||...+.
T Consensus        84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~  148 (249)
T PRK12825         84 RIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLP  148 (249)
T ss_pred             CCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence            5899999999654432    12234567899999999998887    34454 899999977653

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=99.61  E-value=2.2e-14  Score=111.20  Aligned_cols=119  Identities=20%  Similarity=0.145  Sum_probs=88.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+........+.. ..++.++++|+.+...            .
T Consensus         8 ~~~k~vlItGa~g~iG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   86 (255)
T PRK07523          8 LTGRRALVTGSSQGIGYALAEGLAQA-GAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIG   86 (255)
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999999 88999998875433332222222 2357889999998642            3


Q ss_pred             CcCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHHHc----CC-eEEEEecce
Q 029656           97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~vSS~~  149 (190)
                      .+|+|||+||...+....    +..+..+.+|+.++.++++.+.+.    +. ++|++||..
T Consensus        87 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~  148 (255)
T PRK07523         87 PIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQ  148 (255)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccch
Confidence            589999999975432221    223557889999999999888643    33 899999854

>PRK05993 short chain dehydrogenase; Provisional

Probab=99.61  E-value=9.8e-15  Score=114.71  Aligned_cols=114  Identities=18%  Similarity=0.154  Sum_probs=83.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------------CC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------------IE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------------~~   97 (190)
                      ++++++||||+|+||+++++.|+++ |++|++++|+.+...    .+. ..++.++.+|+.|.+.             .+
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~-G~~Vi~~~r~~~~~~----~l~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~   76 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSD-GWRVFATCRKEEDVA----ALE-AEGLEAFQLDYAEPESIAALVAQVLELSGGR   76 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHH----HHH-HCCceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999999999999999999998 899999998644322    222 2357888999998631             25


Q ss_pred             cCEEEEccCCCCCcccc----cCchhHHHHHHHHHH----HHHHHHHHcCC-eEEEEeccee
Q 029656           98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTL----NMLGLAKRVGA-RILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~----~l~~~~~~~~~-~~i~vSS~~~  150 (190)
                      +|+||||||........    +.....+++|+.++.    .+++.+++.+. ++|++||...
T Consensus        77 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~  138 (277)
T PRK05993         77 LDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILG  138 (277)
T ss_pred             ccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhh
Confidence            89999999865543222    223457899999954    55566666665 8999999653

>PRK06179 short chain dehydrogenase; Provisional

Probab=99.61  E-value=2.4e-14  Score=111.84  Aligned_cols=114  Identities=24%  Similarity=0.196  Sum_probs=86.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      ++++++||||+|+||+++++.|+++ |++|+++.|+......       ..++.++++|+.|.+.            ..+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~-g~~V~~~~r~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~   74 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARA-GYRVFGTSRNPARAAP-------IPGVELLELDVTDDASVQAAVDEVIARAGRI   74 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeCChhhccc-------cCCCeeEEeecCCHHHHHHHHHHHHHhCCCC
Confidence            4678999999999999999999999 8999999986543221       2367889999998642            358


Q ss_pred             CEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029656           99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        99 d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      |+||||||.......    .+..+..+++|+.++.++++.+    ++.+. ++|++||...+.
T Consensus        75 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~  137 (270)
T PRK06179         75 DVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFL  137 (270)
T ss_pred             CEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccC
Confidence            999999997543221    2234567999999998888775    44554 899999966543

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=99.60  E-value=1.7e-14  Score=106.39  Aligned_cols=101  Identities=33%  Similarity=0.532  Sum_probs=84.0

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCCCC
Q 029656           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACPAS  109 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~~~  109 (190)
                      |+|+||+|++|+.+++.|+++ +++|+++.|++.....       ..+++++.+|+.|..     +.++|+||+++|...
T Consensus         1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~~~~~-------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~   72 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPSKAED-------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP   72 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGGGHHH-------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred             eEEECCCChHHHHHHHHHHHC-CCEEEEEecCchhccc-------ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence            789999999999999999999 7999999997553332       568999999999874     357999999996432


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCC
Q 029656          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV  156 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~  156 (190)
                      .             +...+.++++++++.++ |+|++|+.++|.....
T Consensus        73 ~-------------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~  107 (183)
T PF13460_consen   73 K-------------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPG  107 (183)
T ss_dssp             T-------------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTS
T ss_pred             c-------------cccccccccccccccccccceeeeccccCCCCCc
Confidence            2             16677899999999997 9999999999885444

...

>PRK08267 short chain dehydrogenase; Provisional

Probab=99.60  E-value=1.7e-14  Score=112.18  Aligned_cols=116  Identities=22%  Similarity=0.081  Sum_probs=86.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-------------cCCc
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------------LIEV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-------------~~~~   98 (190)
                      |++++||||+|+||+++++.|+++ |+.|.+++|+.+...+....+ ....+.++++|+.+..             ..++
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAE-GWRVGAYDINEAGLAALAAEL-GAGNAWTGALDVTDRAAWDAALADFAAATGGRL   78 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            478999999999999999999999 899999988654333222222 2346889999999853             2357


Q ss_pred             CEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecce
Q 029656           99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~  149 (190)
                      |+||||||.......    .+..+..+++|+.++.++++++.+    .+ .++|++||..
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~  138 (260)
T PRK08267         79 DVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSAS  138 (260)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchh
Confidence            999999997653221    223556799999999999888743    33 4899999865

>PRK06914 short chain dehydrogenase; Provisional

Probab=99.60  E-value=2.3e-14  Score=112.59  Aligned_cols=119  Identities=18%  Similarity=0.131  Sum_probs=87.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc-----------C
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL-----------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~-----------~   96 (190)
                      ++++++||||+|+||+++++.|+++ |++|++++|+.+..........   ...++.++.+|+.|.+.           .
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~   80 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKK-GYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG   80 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence            5688999999999999999999999 8999999887544333222221   12468899999998642           2


Q ss_pred             CcCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEeccee
Q 029656           97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEV  150 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~  150 (190)
                      ++|+||||||...+....    +.....+++|+.++.++++.+    ++.+. ++|++||...
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~  143 (280)
T PRK06914         81 RIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISG  143 (280)
T ss_pred             CeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccc
Confidence            589999999865543222    234456889999998888775    44554 8999998643

>PLN00016 RNA-binding protein; Provisional

Probab=99.60  E-value=9.2e-15  Score=119.79  Aligned_cols=114  Identities=20%  Similarity=0.256  Sum_probs=86.5

Q ss_pred             CCCEEEEE----cccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh-------hhhhhcCCceEEEeccccccc----c
Q 029656           31 SNMRILVT----GGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-------LRKWIGHPRFELIRHDVTEPL----L   95 (190)
Q Consensus        31 ~~~~vlIt----G~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~----~   95 (190)
                      ++++|+||    ||+||||+++++.|+++ |++|+++.|+.......       +..+. ..++.++.+|+.|..    .
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~-G~~V~~l~R~~~~~~~~~~~~~~~~~~l~-~~~v~~v~~D~~d~~~~~~~  128 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKA-GHEVTLFTRGKEPSQKMKKEPFSRFSELS-SAGVKTVWGDPADVKSKVAG  128 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHC-CCEEEEEecCCcchhhhccCchhhhhHhh-hcCceEEEecHHHHHhhhcc
Confidence            45789999    99999999999999999 89999999976532110       11111 235788999998732    2


Q ss_pred             CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCC
Q 029656           96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDES  162 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~  162 (190)
                      .++|+|||+++.                +..++.+++++|++.++ ++||+||.++|+.....++.|+
T Consensus       129 ~~~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~  180 (378)
T PLN00016        129 AGFDVVYDNNGK----------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEG  180 (378)
T ss_pred             CCccEEEeCCCC----------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCC
Confidence            369999999752                13357789999999997 8999999999997655566666

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=99.60  E-value=2.4e-14  Score=111.22  Aligned_cols=121  Identities=15%  Similarity=0.074  Sum_probs=84.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------cC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.. .......+.. ...+.++.+|+.+.+            ..
T Consensus         6 ~~~k~vlVtGas~gIG~~la~~l~~~-G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (260)
T PRK12823          6 FAGKVVVVTGAAQGIGRGVALRAAAE-GARVVLVDRSEL-VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFG   83 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            46789999999999999999999999 889999988632 1122222211 246778899999853            13


Q ss_pred             CcCEEEEccCCCCC--c---ccccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029656           97 EVDQIYHLACPASP--I---FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~--~---~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      ++|+||||||....  .   ...+.....+++|+.++..+++.+    ++.+. ++|++||...++
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~  149 (260)
T PRK12823         84 RIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRG  149 (260)
T ss_pred             CCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccC
Confidence            58999999985321  1   122334566889998887665544    44554 899999977653

>PRK06128 oxidoreductase; Provisional

Probab=99.60  E-value=3e-14  Score=113.29  Aligned_cols=122  Identities=16%  Similarity=0.110  Sum_probs=89.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhh-hhh-cCCceEEEecccccccc-----------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLR-KWI-GHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~-~~~-~~~~~~~~~~D~~~~~~-----------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++..++.+... ..+. .+. ...++.++.+|+.+...           
T Consensus        53 l~~k~vlITGas~gIG~~~a~~l~~~-G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  131 (300)
T PRK06128         53 LQGRKALITGADSGIGRATAIAFARE-GADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE  131 (300)
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHHHc-CCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999 888888776543211 1121 111 12467888999998632           


Q ss_pred             -CCcCEEEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecC
Q 029656           96 -IEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~  152 (190)
                       .++|+||||||.....     ...+.++..+++|+.++.++++++...   +.++|++||...|.
T Consensus       132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~  197 (300)
T PRK06128        132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQ  197 (300)
T ss_pred             hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccC
Confidence             3699999999964321     123446678999999999999998753   34899999987764

>PRK09135 pteridine reductase; Provisional

Probab=99.59  E-value=1.6e-14  Score=111.17  Aligned_cols=138  Identities=17%  Similarity=0.121  Sum_probs=94.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhh-hh--cCCceEEEecccccccc------------
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-WI--GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~-~~--~~~~~~~~~~D~~~~~~------------   95 (190)
                      .+++++|||++|+||+++++.|+++ |++|+++.|+.......+.. +.  ....+.++.+|+.+...            
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   83 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAA-GYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAF   83 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5588999999999999999999999 89999998864432222211 11  12357889999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc----CCeEEEEecceecCCCCCCCCCCCCccCC
Q 029656           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVYGDPLVHPQDESYWGNV  167 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~vSS~~~~~~~~~~~~~e~~~~~~  167 (190)
                      .++|+|||+||......    ..+.++.++++|+.++.++++++.+.    +..++.+++..           +.     
T Consensus        84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~-----  147 (249)
T PRK09135         84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIH-----------AE-----  147 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChh-----------hc-----
Confidence            25899999998644321    12345678999999999999998642    22555555421           11     


Q ss_pred             CCCCcccchhhhhHHHHhhhh
Q 029656          168 NPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       168 ~~~~~~~~y~~~~~sK~~~E~  188 (190)
                      .+..+...|   +.+|...|.
T Consensus       148 ~~~~~~~~Y---~~sK~~~~~  165 (249)
T PRK09135        148 RPLKGYPVY---CAAKAALEM  165 (249)
T ss_pred             CCCCCchhH---HHHHHHHHH
Confidence            233334566   888988774

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.59  E-value=2.6e-14  Score=110.61  Aligned_cols=122  Identities=20%  Similarity=0.070  Sum_probs=88.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++|||++|+||+++++.|+++ |++|+++.|+..........+. ...++.++.+|+.+...            .
T Consensus         2 ~~~~~vlItG~sg~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   80 (258)
T PRK12429          2 LKGKVALVTGAASGIGLEIALALAKE-GAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG   80 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46789999999999999999999999 8999999997655444333332 13468889999998642            2


Q ss_pred             CcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029656           97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      .+|+|||+||.......    ....+..+++|+.++..+++.+    ++.+. ++|++||...+.
T Consensus        81 ~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~  145 (258)
T PRK12429         81 GVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLV  145 (258)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhcc
Confidence            58999999986544221    1224456788999866655544    44555 899999976443

>PRK06182 short chain dehydrogenase; Validated

Probab=99.59  E-value=3e-14  Score=111.64  Aligned_cols=113  Identities=17%  Similarity=0.105  Sum_probs=83.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      .+++++|||++|+||+++++.|+++ |++|+++.|+.+.    +..+. ..++.++.+|++|.+.            .++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~-G~~V~~~~r~~~~----l~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~i   75 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQ-GYTVYGAARRVDK----MEDLA-SLGVHPLSLDVTDEASIKAAVDTIIAEEGRI   75 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHH----HHHHH-hCCCeEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            5689999999999999999999998 8999999886433    22222 1357889999998642            269


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHH----HHHHHcCC-eEEEEecce
Q 029656           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNML----GLAKRVGA-RILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~----~~~~~~~~-~~i~vSS~~  149 (190)
                      |+|||+||......    ..+.++..+++|+.++..++    ..+++.+. ++|++||..
T Consensus        76 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~  135 (273)
T PRK06182         76 DVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMG  135 (273)
T ss_pred             CEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchh
Confidence            99999999754321    22345667899998865554    45556654 899999965

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.59  E-value=1.4e-14  Score=115.29  Aligned_cols=121  Identities=21%  Similarity=0.168  Sum_probs=97.0

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc----------
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~----------   95 (190)
                      ...+++++|||++..||.++++.|+.+ |.+|+...|+.+........+.   ....+.+.++|+.+...          
T Consensus        32 ~~~~~~~vVTGansGIG~eta~~La~~-Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~  110 (314)
T KOG1208|consen   32 DLSGKVALVTGATSGIGFETARELALR-GAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK  110 (314)
T ss_pred             cCCCcEEEEECCCCchHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence            357799999999999999999999999 7999999998755554444443   35688889999998642          


Q ss_pred             --CCcCEEEEccCCCCCcc--cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEeccee
Q 029656           96 --IEVDQIYHLACPASPIF--YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEV  150 (190)
Q Consensus        96 --~~~d~vi~~ag~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~  150 (190)
                        ...|++|||||++.+..  .++..+..+.+|+.|.+.+.+.+    +... .|+|++||...
T Consensus       111 ~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~  174 (314)
T KOG1208|consen  111 KEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG  174 (314)
T ss_pred             cCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc
Confidence              35999999999888654  34567889999999998887665    4443 59999999775

>PRK07063 short chain dehydrogenase; Provisional

Probab=99.59  E-value=2.5e-14  Score=111.18  Aligned_cols=121  Identities=16%  Similarity=0.075  Sum_probs=89.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc---CCceEEEecccccccc-----------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~-----------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+..   ..++.++++|+.+++.           
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFARE-GAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA   83 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            36799999999999999999999999 88999999876544443333322   3468889999998642           


Q ss_pred             -CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecceec
Q 029656           96 -IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~~  151 (190)
                       .++|+||||||......    ..+..+..+++|+.++.++++++..    .+ .++|++||...+
T Consensus        84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  149 (260)
T PRK07063         84 FGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAF  149 (260)
T ss_pred             hCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhc
Confidence             35999999999643211    1234556789999999988887643    33 389999996543

>PRK06500 short chain dehydrogenase; Provisional

Probab=99.59  E-value=3.2e-14  Score=109.66  Aligned_cols=116  Identities=17%  Similarity=0.126  Sum_probs=85.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      ++++++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++++|+.+...            .++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAE-GARVAITGRDPASLEAARAEL--GESALVIRADAGDVAAQKALAQALAEAFGRL   81 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEecCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999999999 889999988643322222222  2367888999987532            358


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH---cCCeEEEEecce
Q 029656           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR---VGARILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~---~~~~~i~vSS~~  149 (190)
                      |+|||+||......    ..+.++..+++|+.++.++++++.+   ...++|++||..
T Consensus        82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~  139 (249)
T PRK06500         82 DAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSIN  139 (249)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechH
Confidence            99999998654321    2234557899999999999999974   234788777744

>PRK07478 short chain dehydrogenase; Provisional

Probab=99.59  E-value=3.2e-14  Score=110.23  Aligned_cols=120  Identities=14%  Similarity=0.049  Sum_probs=87.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------cCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LIE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~~~   97 (190)
                      ++++++||||+|+||.++++.|+++ |++|++++|+.+.......++.. ..++.++.+|+.+..            ..+
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFARE-GAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG   83 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            5789999999999999999999999 88999999875544333333321 246788899999863            236


Q ss_pred             cCEEEEccCCCCC--cc---cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029656           98 VDQIYHLACPASP--IF---YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~--~~---~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      +|+|||+||....  ..   ..+..+..+++|+.++..+.+.+    .+.+. ++|++||...+
T Consensus        84 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~  147 (254)
T PRK07478         84 LDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGH  147 (254)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhh
Confidence            9999999996532  11   12335567999999888776654    33443 89999996644

>PRK05876 short chain dehydrogenase; Provisional

Probab=99.59  E-value=2.9e-14  Score=112.06  Aligned_cols=122  Identities=15%  Similarity=0.074  Sum_probs=89.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|++..|+.+........+.. ..++.++.+|+.|...            .
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~-G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARR-GARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLG   82 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            46789999999999999999999999 88999988875444333333322 2357888999998642            2


Q ss_pred             CcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHH----HcC--CeEEEEecceecC
Q 029656           97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~i~vSS~~~~~  152 (190)
                      ++|+||||||.......    .+..+..+++|+.++.++++.+.    +.+  .++|++||...+.
T Consensus        83 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~  148 (275)
T PRK05876         83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLV  148 (275)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhcc
Confidence            58999999997543221    22344578999999999988874    333  4899999976553

>PRK06398 aldose dehydrogenase; Validated

Probab=99.59  E-value=6.9e-14  Score=108.82  Aligned_cols=112  Identities=21%  Similarity=0.167  Sum_probs=85.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+....          ..+.++++|+.++..            .+
T Consensus         4 l~gk~vlItGas~gIG~~ia~~l~~~-G~~Vi~~~r~~~~~----------~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   72 (258)
T PRK06398          4 LKDKVAIVTGGSQGIGKAVVNRLKEE-GSNVINFDIKEPSY----------NDVDYFKVDVSNKEQVIKGIDYVISKYGR   72 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCcccc----------CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999 89999998865432          257889999998632            35


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecceecC
Q 029656           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~~~  152 (190)
                      +|+||||||.......    .+..+..+++|+.++.++++++.+    .+ .++|++||...+.
T Consensus        73 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  136 (258)
T PRK06398         73 IDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFA  136 (258)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhcc
Confidence            9999999996543221    123445689999999998877743    33 3899999976543

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.58  E-value=3.4e-14  Score=110.17  Aligned_cols=118  Identities=22%  Similarity=0.167  Sum_probs=84.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |+.|+++.++.+.....+.   . .++.++.+|+.|+..            .+
T Consensus         5 l~~k~~lItGas~gIG~~~a~~l~~~-G~~v~~~~~~~~~~~~~l~---~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   79 (255)
T PRK06463          5 FKGKVALITGGTRGIGRAIAEAFLRE-GAKVAVLYNSAENEAKELR---E-KGVFTIKCDVGNRDQVKKSKEVVEKEFGR   79 (255)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCcHHHHHHHH---h-CCCeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            36799999999999999999999999 7888887665432222222   1 257889999998642            35


Q ss_pred             cCEEEEccCCCCCc-c---cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceecC
Q 029656           98 VDQIYHLACPASPI-F---YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~-~---~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~~  152 (190)
                      +|+||||||..... .   ..+..+..+++|+.++..+.+.+    ++.+ .++|++||...++
T Consensus        80 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~  143 (255)
T PRK06463         80 VDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIG  143 (255)
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCC
Confidence            89999999865321 1   22335567899999976665444    4344 3899999977664

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.58  E-value=4.2e-14  Score=110.10  Aligned_cols=119  Identities=22%  Similarity=0.242  Sum_probs=89.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh---hhhhhcCCceEEEeccccccc------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN---LRKWIGHPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~------------   94 (190)
                      +.+|.|+||||+..||.+++..|+++ |.++.++.|+....+..   +.+.....++..+++|++|.+            
T Consensus        10 ~~~kvVvITGASsGIG~~lA~~la~~-G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~   88 (282)
T KOG1205|consen   10 LAGKVVLITGASSGIGEALAYELAKR-GAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH   88 (282)
T ss_pred             hCCCEEEEeCCCcHHHHHHHHHHHhC-CCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence            47899999999999999999999999 77766666655554433   333333336999999999974            


Q ss_pred             cCCcCEEEEccCCCCCcccccC----chhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecce
Q 029656           95 LIEVDQIYHLACPASPIFYKYN----PVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSE  149 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~~~~~~~----~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~  149 (190)
                      +.++|++|||||.......+..    ....+++|+.|+..+.+++    ++.+ .+||.+||..
T Consensus        89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSia  152 (282)
T KOG1205|consen   89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIA  152 (282)
T ss_pred             cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccc
Confidence            3469999999997764332222    2247999999998887766    4555 5999999966

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.58  E-value=3.8e-14  Score=109.75  Aligned_cols=119  Identities=14%  Similarity=0.067  Sum_probs=86.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh-hhhhh-cCCceEEEecccccccc------------CC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWI-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-~~~~~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++||||+|+||+++++.|+++ |++|+++.|+....... ...+. ...++.++.+|+++...            ..
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~-g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAA-GFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGR   80 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHC-CCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            478999999999999999999999 88999988764432222 22221 12468899999998642            35


Q ss_pred             cCEEEEccCCCCCcc------cccCchhHHHHHHHHHHHHHHHHHHc-----C-----C-eEEEEecceec
Q 029656           98 VDQIYHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKRV-----G-----A-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~-----~-----~-~~i~vSS~~~~  151 (190)
                      +|+||||||...+..      ..+.++..+++|+.++.++++.+.+.     +     . ++|++||...+
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~  151 (256)
T PRK12745         81 IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAI  151 (256)
T ss_pred             CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhc
Confidence            899999998653211      12345567999999999998887432     1     2 69999997654

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.58  E-value=3.5e-14  Score=109.69  Aligned_cols=120  Identities=19%  Similarity=0.100  Sum_probs=87.1

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEeccccccc------------cCCc
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LIEV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~------------~~~~   98 (190)
                      +++++|||++|+||+++++.|+++ |++|+++.|+..........+. ...++.++.+|+.+.+            ..++
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   79 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAA-GANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL   79 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            468999999999999999999999 8899999987543332222221 1246888999999864            2358


Q ss_pred             CEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029656           99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        99 d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      |+|||++|.......    ....+..++.|+.++..+++.+    ++.+. ++|++||...+.
T Consensus        80 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~  142 (255)
T TIGR01963        80 DILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLV  142 (255)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcC
Confidence            999999986543221    1224456889999988887776    45555 899999976544

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=99.58  E-value=3e-14  Score=110.06  Aligned_cols=115  Identities=17%  Similarity=0.135  Sum_probs=83.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCcCE
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVDQ  100 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~d~  100 (190)
                      |+++||||+|+||.++++.|+++ |++|+++.|+.+........+  ..++.++.+|+.+...            .++|+
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   77 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQ-GHKVIATGRRQERLQELKDEL--GDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDV   77 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh--ccceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            57999999999999999999999 899999998654332221111  2367889999998632            26999


Q ss_pred             EEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEeccee
Q 029656          101 IYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEV  150 (190)
Q Consensus       101 vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~  150 (190)
                      |||+||.....     ...+.....+++|+.++..+++.+    .+.+. ++|++||...
T Consensus        78 vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~  137 (248)
T PRK10538         78 LVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAG  137 (248)
T ss_pred             EEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCccc
Confidence            99999864311     122345567899999977766655    44554 8999999654

>PRK08589 short chain dehydrogenase; Validated

Probab=99.58  E-value=5e-14  Score=110.41  Aligned_cols=120  Identities=18%  Similarity=0.121  Sum_probs=87.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+ +........+.. ..++..+.+|+.+...            .
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~-G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQE-GAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            36789999999999999999999999 8999999887 333333333321 2368889999998632            3


Q ss_pred             CcCEEEEccCCCCC-c-cc---ccCchhHHHHHHHHHHHHHHHHH----HcCCeEEEEecceec
Q 029656           97 EVDQIYHLACPASP-I-FY---KYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~-~-~~---~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~vSS~~~~  151 (190)
                      ++|+||||||.... . ..   .+..+..+++|+.++..+++.+.    +.+.++|++||...+
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  145 (272)
T PRK08589         82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQ  145 (272)
T ss_pred             CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhc
Confidence            58999999997532 1 11   12344578899999987776653    334589999996644

>PRK06523 short chain dehydrogenase; Provisional

Probab=99.58  E-value=5.6e-14  Score=109.15  Aligned_cols=113  Identities=19%  Similarity=0.193  Sum_probs=85.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.....        ...+.++++|+.|.+.            .+
T Consensus         7 ~~~k~vlItGas~gIG~~ia~~l~~~-G~~v~~~~r~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   77 (260)
T PRK06523          7 LAGKRALVTGGTKGIGAATVARLLEA-GARVVTTARSRPDDL--------PEGVEFVAADLTTAEGCAAVARAVLERLGG   77 (260)
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHC-CCEEEEEeCChhhhc--------CCceeEEecCCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999 889999988643211        2367889999998642            35


Q ss_pred             cCEEEEccCCCCCc------ccccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceec
Q 029656           98 VDQIYHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~  151 (190)
                      +|+|||+||.....      ...+.++..+++|+.++.++.+.+    ++.+. ++|++||...+
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~  142 (260)
T PRK06523         78 VDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRR  142 (260)
T ss_pred             CCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEeccccc
Confidence            89999999854211      123345667899999998776655    34443 89999996544

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=99.58  E-value=4.5e-14  Score=110.84  Aligned_cols=122  Identities=16%  Similarity=0.149  Sum_probs=87.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------cC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |+.|++++|+.+........+.. ..++.++++|+.+..            +.
T Consensus         8 ~~~k~vlVtGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (278)
T PRK08277          8 LKGKVAVITGGGGVLGGAMAKELARA-GAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFG   86 (278)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            36789999999999999999999999 88999999875443333333322 236788999999863            13


Q ss_pred             CcCEEEEccCCCCCcc-------------------cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceecC
Q 029656           97 EVDQIYHLACPASPIF-------------------YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~-------------------~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~~  152 (190)
                      ++|+||||||...+..                   ..+.....+++|+.++..+++.+    .+.+ .++|++||...+.
T Consensus        87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~  166 (278)
T PRK08277         87 PCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAFT  166 (278)
T ss_pred             CCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcC
Confidence            6999999999643321                   12234567899999998776554    3344 3899999977654

>PRK08251 short chain dehydrogenase; Provisional

Probab=99.58  E-value=6.6e-14  Score=107.96  Aligned_cols=118  Identities=14%  Similarity=0.159  Sum_probs=87.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc------------C
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++||||+|+||+++++.|+++ +++|+++.|+.+........+.   +...+.++.+|+.+.+.            .
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAK-GRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999 7899999887554333222222   13468889999998742            3


Q ss_pred             CcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEeccee
Q 029656           97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEV  150 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~  150 (190)
                      ++|+|||+||.......    .+.....+++|+.++.++++.+.    +.+. ++|++||...
T Consensus        81 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~  143 (248)
T PRK08251         81 GLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSA  143 (248)
T ss_pred             CCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence            59999999997553221    12334578999999988887764    3344 8999999654

>PRK07985 oxidoreductase; Provisional

Probab=99.57  E-value=1.4e-13  Score=109.26  Aligned_cols=122  Identities=21%  Similarity=0.191  Sum_probs=88.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC-Chhhhhhhh--cCCceEEEeccccccc------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWI--GHPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~-~~~~~~~~~--~~~~~~~~~~D~~~~~------------   94 (190)
                      +++++++||||+|+||+++++.|+++ |++|++..|+... ..+.+....  ...++.++.+|+.+.+            
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~-G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~  125 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYARE-GADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA  125 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHC-CCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999 8899888764322 122222221  1235778899999863            


Q ss_pred             cCCcCEEEEccCCCCC-----cccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecC
Q 029656           95 LIEVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~  152 (190)
                      +.++|++||+||....     ....+++++.+++|+.++.++++++...   +.++|++||...+.
T Consensus       126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~  191 (294)
T PRK07985        126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQ  191 (294)
T ss_pred             hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhcc
Confidence            2358999999985421     1123345678999999999999888653   34899999987664

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=99.57  E-value=2.7e-14  Score=110.11  Aligned_cols=122  Identities=21%  Similarity=0.126  Sum_probs=88.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ++++++||||+|+||+++++.|+++ |++|+++.|+..........+.. ...+.++.+|+.+...            .+
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   80 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEE-GAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP   80 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            6789999999999999999999999 88999998865433322222221 2468889999998632            25


Q ss_pred             cCEEEEccCCCCCcc-cc---cCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecCC
Q 029656           98 VDQIYHLACPASPIF-YK---YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGD  153 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~-~~---~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~~  153 (190)
                      +|+|||++|...... ..   ...+..+++|+.++.++++.+.    +.+. ++|++||...+..
T Consensus        81 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~  145 (250)
T TIGR03206        81 VDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVG  145 (250)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccC
Confidence            899999998643221 11   2234569999999999888774    3444 8999999876653

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.57  E-value=5.2e-14  Score=108.60  Aligned_cols=121  Identities=17%  Similarity=0.079  Sum_probs=84.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEE-EcCCCCCChhhhhhhhc-CCceEEEecccccccc------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~-~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++ ..|+.+........+.. ..++.++.+|+.+++.            
T Consensus         2 ~~~~~vlItGa~g~iG~~~a~~l~~~-g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (250)
T PRK08063          2 FSGKVALVTGSSRGIGKAIALRLAEE-GYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEF   80 (250)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35689999999999999999999999 777766 45654333222222211 3467889999998742            


Q ss_pred             CCcCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceec
Q 029656           96 IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~  151 (190)
                      ..+|+|||+||........    +.....+++|+.++.++++++.+    .+. ++|++||...+
T Consensus        81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~  145 (250)
T PRK08063         81 GRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSI  145 (250)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhc
Confidence            2589999999864432211    12334678999999999887754    333 89999996543

>PRK08643 acetoin reductase; Validated

Probab=99.57  E-value=3.9e-14  Score=109.76  Aligned_cols=118  Identities=19%  Similarity=0.166  Sum_probs=85.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CCc
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      +++++||||+|+||+++++.|+++ |++|++++|+.+.......++.. ..++.++++|+.+++.            .++
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   80 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVED-GFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL   80 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999 88999999875543333333321 2467889999998642            358


Q ss_pred             CEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEeccee
Q 029656           99 DQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEV  150 (190)
Q Consensus        99 d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~  150 (190)
                      |+||||||.......    .+..+..+++|+.++..+++.+..    .+  .++|++||...
T Consensus        81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~  142 (256)
T PRK08643         81 NVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAG  142 (256)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcccc
Confidence            999999986432211    223456789999998877766643    22  48999998664

>PRK05872 short chain dehydrogenase; Provisional

Probab=99.57  E-value=5e-14  Score=111.80  Aligned_cols=122  Identities=20%  Similarity=0.134  Sum_probs=89.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.....+..+.+|++|.+.            .+
T Consensus         7 l~gk~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   85 (296)
T PRK05872          7 LAGKVVVVTGAARGIGAELARRLHAR-GAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGG   85 (296)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999 889999998655433333333223456667799998632            35


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceecC
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~~  152 (190)
                      +|+||||||......    ..+..+..+++|+.++.++++.+..    .+.++|++||...+.
T Consensus        86 id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~  148 (296)
T PRK05872         86 IDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFA  148 (296)
T ss_pred             CCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcC
Confidence            999999999754321    1223456789999999999888753    234899999976554

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.57  E-value=4e-14  Score=108.37  Aligned_cols=120  Identities=17%  Similarity=0.080  Sum_probs=87.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      ++++++||||+|+||+++++.|+++ |++|+++.|++.........+....++.++++|+.+...            .++
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   83 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAE-GYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL   83 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHC-CCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4689999999999999999999998 889999998654333333333222568889999998632            269


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc---C-CeEEEEecceec
Q 029656           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---G-ARILLTSTSEVY  151 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~-~~~i~vSS~~~~  151 (190)
                      |+|||++|......    ..+..++.+++|+.++.++++++.+.   + .++|++||...+
T Consensus        84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~  144 (237)
T PRK07326         84 DVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGT  144 (237)
T ss_pred             CEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhc
Confidence            99999998654321    12234567899999999988887542   3 379999986543

>PRK05875 short chain dehydrogenase; Provisional

Probab=99.57  E-value=4.2e-14  Score=110.84  Aligned_cols=121  Identities=21%  Similarity=0.146  Sum_probs=87.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc---CCceEEEecccccccc-----------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++|||++|+||+++++.|+++ |++|+++.|+.+........+..   ..++.++.+|+.++..           
T Consensus         5 ~~~k~vlItGasg~IG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   83 (276)
T PRK05875          5 FQDRTYLVTGGGSGIGKGVAAGLVAA-GAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAW   83 (276)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46799999999999999999999999 88999999875443332222221   2467888999998642           


Q ss_pred             -CCcCEEEEccCCCCC--cc---cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecceec
Q 029656           96 -IEVDQIYHLACPASP--IF---YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~--~~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~~  151 (190)
                       .++|+|||+||....  ..   ..+.....+++|+.++.++++.+.+    .+ .+++++||...+
T Consensus        84 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~  150 (276)
T PRK05875         84 HGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAAS  150 (276)
T ss_pred             cCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhc
Confidence             258999999985432  11   1223456789999999999877643    23 389999997654

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=99.57  E-value=4e-14  Score=109.20  Aligned_cols=120  Identities=13%  Similarity=0.101  Sum_probs=88.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |+.|+++.|+..  ......+.. ..++..+.+|+++.+.            .
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~-G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEA-GADIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFG   79 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999 889999988542  111111111 2468889999998632            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceecC
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~~  152 (190)
                      ++|+|||+||......    ..+..++.+++|+.++.++++.+.+    .+  .++|++||...+.
T Consensus        80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~  145 (248)
T TIGR01832        80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQ  145 (248)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhcc
Confidence            5999999999754321    1233556789999999999888743    33  3899999987665

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07035 short chain dehydrogenase; Provisional

Probab=99.57  E-value=6.3e-14  Score=108.37  Aligned_cols=119  Identities=20%  Similarity=0.142  Sum_probs=86.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||.++++.|+++ |++|++++|+.+........+.. ...+.++++|+.+...            .
T Consensus         6 l~~k~vlItGas~gIG~~l~~~l~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK07035          6 LTGKIALVTGASRGIGEAIAKLLAQQ-GAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG   84 (252)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999999 88999999865443333333221 2357788999988642            2


Q ss_pred             CcCEEEEccCCCCC-----cccccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecce
Q 029656           97 EVDQIYHLACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~  149 (190)
                      ++|+|||+||....     ....+..+..+++|+.++..+++++    ++.+. ++|++||..
T Consensus        85 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~  147 (252)
T PRK07035         85 RLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVN  147 (252)
T ss_pred             CCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchh
Confidence            58999999985421     1112234567999999998887766    33343 899999864

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.57  E-value=4.5e-14  Score=109.06  Aligned_cols=117  Identities=21%  Similarity=0.193  Sum_probs=82.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC-
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE-   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~-   97 (190)
                      ++++++||||+|+||+++++.|+++ |++|++..++.......+.... ..++.++++|+.+...            .. 
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~-G~~vv~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   81 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFARE-GARVVVNYHQSEDAAEALADEL-GDRAIALQADVTDREQVQAMFATATEHFGKP   81 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            5689999999999999999999999 7888776554322222222211 2467889999988532            13 


Q ss_pred             cCEEEEccCCCCC-------cc---cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecce
Q 029656           98 VDQIYHLACPASP-------IF---YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSE  149 (190)
Q Consensus        98 ~d~vi~~ag~~~~-------~~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~  149 (190)
                      +|++||+||....       ..   +.+...+.+++|+.++.++++++..    .+. ++|++||..
T Consensus        82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~  148 (253)
T PRK08642         82 ITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNL  148 (253)
T ss_pred             CeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence            8999999985321       01   1223456799999999999988853    333 899999843

>PRK07775 short chain dehydrogenase; Provisional

Probab=99.56  E-value=6.9e-14  Score=109.74  Aligned_cols=121  Identities=12%  Similarity=0.042  Sum_probs=87.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------CC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      .+++++||||+|+||+++++.|+++ |+.|+++.|+.+........+. ...++.++.+|+.+.+.            .+
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   87 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAA-GFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGE   87 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            5589999999999999999999999 8899888886443222222221 12367888999998642            25


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029656           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      +|+|||+||.......    .+.....+++|+.++.++++.+.    +.+. ++|++||...+.
T Consensus        88 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~  151 (274)
T PRK07775         88 IEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALR  151 (274)
T ss_pred             CCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcC
Confidence            8999999986543221    12344568999999999988764    2333 799999976654

>PRK06181 short chain dehydrogenase; Provisional

Probab=99.56  E-value=8.6e-14  Score=108.29  Aligned_cols=120  Identities=13%  Similarity=0.095  Sum_probs=87.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CCc
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      +++++||||+|+||+++++.|+++ |++|++++|+..........+.. ...+.++.+|+.+...            .++
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~-g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   79 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARA-GAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI   79 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999998 78999999875443332222221 2467888999998642            268


Q ss_pred             CEEEEccCCCCCccccc-----CchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceecC
Q 029656           99 DQIYHLACPASPIFYKY-----NPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYG  152 (190)
Q Consensus        99 d~vi~~ag~~~~~~~~~-----~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~~  152 (190)
                      |+||||||........+     ...+.+++|+.++.++++.+..    ...++|++||...+.
T Consensus        80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~  142 (263)
T PRK06181         80 DILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLT  142 (263)
T ss_pred             CEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccC
Confidence            99999998655332221     2345689999999999988853    234899999977654

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=99.56  E-value=9.5e-14  Score=111.12  Aligned_cols=121  Identities=15%  Similarity=0.147  Sum_probs=87.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhh-cCCceEEEeccccccc------------cC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPL------------LI   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~------------~~   96 (190)
                      ++++++||||++.||+++++.|+++ | ++|+++.|+.+........+. ....+.++.+|+.+..            ..
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~-G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   80 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAAT-GEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGR   80 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999999 7 899999886544333222221 1246788899999863            23


Q ss_pred             CcCEEEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHH----HHcC---CeEEEEecceecC
Q 029656           97 EVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLA----KRVG---ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~---~~~i~vSS~~~~~  152 (190)
                      ++|++|||||...+.     ...+..+..+++|+.++..+++.+    ++.+   .+||++||...+.
T Consensus        81 ~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~  148 (314)
T TIGR01289        81 PLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNT  148 (314)
T ss_pred             CCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCcccc
Confidence            599999999964321     122345567999999988886655    3332   4999999987654

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.56  E-value=8.7e-14  Score=130.13  Aligned_cols=150  Identities=23%  Similarity=0.255  Sum_probs=103.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcC---CCeEEEEcCCCCCChhhhhhhh------------cCCceEEEecccccccc-
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENE---KNEVIVVDNYFTGSKDNLRKWI------------GHPRFELIRHDVTEPLL-   95 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~---~~~v~~~~r~~~~~~~~~~~~~------------~~~~~~~~~~D~~~~~~-   95 (190)
                      .++|+|||++||||.++++.|++++   ..+|+++.|....... ...+.            ...++.++.+|+.++.+ 
T Consensus       971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~-~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443       971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAG-LERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred             CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHH-HHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence            5889999999999999999999883   3788888886433221 11110            01368899999986532 


Q ss_pred             ----------CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCC--------
Q 029656           96 ----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV--------  156 (190)
Q Consensus        96 ----------~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~--------  156 (190)
                                .++|+|||+|+....   ..........|+.++.+++++|.+.+. +++|+||..+|+....        
T Consensus      1050 l~~~~~~~l~~~~d~iiH~Aa~~~~---~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~~ 1126 (1389)
T TIGR03443      1050 LSDEKWSDLTNEVDVIIHNGALVHW---VYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDELV 1126 (1389)
T ss_pred             cCHHHHHHHHhcCCEEEECCcEecC---ccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhhh
Confidence                      369999999986542   123344456899999999999998876 8999999999974211        


Q ss_pred             ----CCCCCCCccCCCCCCcccchhhhhHHHHhhhh
Q 029656          157 ----HPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       157 ----~~~~e~~~~~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                          ..+.|+.+....+......|   +.||+.+|+
T Consensus      1127 ~~~~~~~~e~~~~~~~~~~~~~~Y---~~sK~~aE~ 1159 (1389)
T TIGR03443      1127 QAGGAGIPESDDLMGSSKGLGTGY---GQSKWVAEY 1159 (1389)
T ss_pred             hccCCCCCcccccccccccCCCCh---HHHHHHHHH
Confidence                12334322112222233456   888999985

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=99.56  E-value=5.7e-14  Score=108.38  Aligned_cols=120  Identities=18%  Similarity=0.111  Sum_probs=86.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccc--------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEP--------------   93 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~--------------   93 (190)
                      +++++++|||++|+||.++++.|++. |+.|++++|+.........++..  ..++.++.+|+.+.              
T Consensus        10 ~~~k~vlItG~~g~iG~~la~~l~~~-G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (247)
T PRK08945         10 LKDRIILVTGAGDGIGREAALTYARH-GATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE   88 (247)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHC-CCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence            47899999999999999999999998 88999999876443333333322  23567777788631              


Q ss_pred             ccCCcCEEEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEeccee
Q 029656           94 LLIEVDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEV  150 (190)
Q Consensus        94 ~~~~~d~vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~  150 (190)
                      ...++|+|||+||.....     ...+..+..+++|+.++.++++++.    +.+. ++|++||...
T Consensus        89 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~  155 (247)
T PRK08945         89 QFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVG  155 (247)
T ss_pred             HhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhh
Confidence            123589999999865431     1123456679999999888888764    3444 8999998653

>PRK07856 short chain dehydrogenase; Provisional

Probab=99.56  E-value=8e-14  Score=107.91  Aligned_cols=114  Identities=18%  Similarity=0.177  Sum_probs=86.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+.   .    .....+.++++|+.+.+.            .+
T Consensus         4 ~~~k~~lItGas~gIG~~la~~l~~~-g~~v~~~~r~~~~---~----~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   75 (252)
T PRK07856          4 LTGRVVLVTGGTRGIGAGIARAFLAA-GATVVVCGRRAPE---T----VDGRPAEFHAADVRDPDQVAALVDAIVERHGR   75 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCChhh---h----hcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999 8899999886543   0    113467889999998632            35


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----c-C-CeEEEEecceec
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----V-G-ARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~-~-~~~i~vSS~~~~  151 (190)
                      +|+||||||......    ..+..+..+++|+.++..+++.+..    . + .++|++||...+
T Consensus        76 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~  139 (252)
T PRK07856         76 LDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGR  139 (252)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccC
Confidence            899999998654221    1223456789999999999988753    2 2 389999996644

>PRK08339 short chain dehydrogenase; Provisional

Probab=99.56  E-value=8.6e-14  Score=108.65  Aligned_cols=121  Identities=17%  Similarity=0.121  Sum_probs=88.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccccc-----------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL-----------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~-----------~   96 (190)
                      +.+++++||||+|.||+++++.|+++ |++|++++|+..........+..  ..++.++.+|+.|+..           .
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g   84 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARA-GADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG   84 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence            46799999999999999999999999 88999999875443333222221  3468889999998632           3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceec
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~  151 (190)
                      ++|++|||||......    ..+.++..+++|+.++..+.+.+    ++.+ .++|++||...+
T Consensus        85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~  148 (263)
T PRK08339         85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIK  148 (263)
T ss_pred             CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCcccc
Confidence            5999999999654321    22345567899988887776555    3444 389999997643

>PRK08264 short chain dehydrogenase; Validated

Probab=99.56  E-value=1e-13  Score=106.25  Aligned_cols=115  Identities=22%  Similarity=0.195  Sum_probs=86.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------CCcCEE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQI  101 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d~v  101 (190)
                      .+++++||||+|+||+++++.|+++ |+ .|+++.|+.+....      ....+.++.+|+.+.+.        ..+|+|
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~-G~~~V~~~~r~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~id~v   77 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLAR-GAAKVYAAARDPESVTD------LGPRVVPLQLDVTDPASVAAAAEAASDVTIL   77 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CcccEEEEecChhhhhh------cCCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence            5689999999999999999999999 76 99999987554322      13468889999998642        248999


Q ss_pred             EEccCCCC-Ccc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029656          102 YHLACPAS-PIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus       102 i~~ag~~~-~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      ||++|... ...    ..+.....+++|+.++.++++++.    ..+. ++|++||...+.
T Consensus        78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~  138 (238)
T PRK08264         78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV  138 (238)
T ss_pred             EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc
Confidence            99998732 211    123345678999999999988864    3343 799999976554

>PRK06701 short chain dehydrogenase; Provisional

Probab=99.56  E-value=9.1e-14  Score=110.06  Aligned_cols=123  Identities=20%  Similarity=0.194  Sum_probs=90.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccccc------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||.++++.|+++ |++|+++.|+.............  ..++.++.+|+.+...            
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~-G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~  122 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKE-GADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL  122 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46789999999999999999999999 89999988865432222222211  2357789999998642            


Q ss_pred             CCcCEEEEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecCC
Q 029656           96 IEVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGD  153 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~~  153 (190)
                      .++|+|||+||.....  .   ..+.....+++|+.++.++++++...   ..++|++||...|..
T Consensus       123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~~  188 (290)
T PRK06701        123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYEG  188 (290)
T ss_pred             CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccCC
Confidence            2589999999864321  1   12234567999999999999988653   248999999877653

>PRK08265 short chain dehydrogenase; Provisional

Probab=99.56  E-value=1e-13  Score=108.01  Aligned_cols=118  Identities=20%  Similarity=0.232  Sum_probs=87.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+  ..++.++++|+.+++.            ..
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   80 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAA-GARVAIVDIDADNGAAVAASL--GERARFIATDITDDAAIERAVATVVARFGR   80 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--CCeeEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            36789999999999999999999999 899999998754333322222  2468889999998742            35


Q ss_pred             cCEEEEccCCCCCc---ccccCchhHHHHHHHHHHHHHHHHHH---c-CCeEEEEeccee
Q 029656           98 VDQIYHLACPASPI---FYKYNPVKTIKTNVIGTLNMLGLAKR---V-GARILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~---~~~~~~~~~~~~n~~~~~~l~~~~~~---~-~~~~i~vSS~~~  150 (190)
                      +|+||||||.....   ...+.+.+.+++|+.++..+++.+..   . +.++|++||...
T Consensus        81 id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~  140 (261)
T PRK08265         81 VDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISA  140 (261)
T ss_pred             CCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhh
Confidence            89999999864321   12234556789999999988887653   2 248999999664

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=99.56  E-value=6.6e-14  Score=108.61  Aligned_cols=116  Identities=17%  Similarity=0.173  Sum_probs=87.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      .+++++||||+|+||+++++.|+++ |++|+++.|+.+........+  ...+.++.+|+.+...            ..+
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAE-GARVVIADIKPARARLAALEI--GPAAIAVSLDVTRQDSIDRIVAAAVERFGGI   81 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5689999999999999999999999 899999988655433322222  2357889999998632            358


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc------CCeEEEEecce
Q 029656           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV------GARILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~------~~~~i~vSS~~  149 (190)
                      |+|||+||......    ..+..+..+++|+.++.++++++...      +.++|++||..
T Consensus        82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~  142 (257)
T PRK07067         82 DILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQA  142 (257)
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHH
Confidence            99999998654321    12345567999999999999888532      24799999954

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.56  E-value=4.9e-14  Score=107.08  Aligned_cols=117  Identities=16%  Similarity=0.142  Sum_probs=81.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------CCcCEEE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQIY  102 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d~vi  102 (190)
                      ++|+++||||+|+||+++++.|+++  ++|+++.|+...... +...  ...+.++++|+.|...        .++|+||
T Consensus         2 ~~~~vlVtG~~g~iG~~l~~~l~~~--~~V~~~~r~~~~~~~-~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi   76 (227)
T PRK08219          2 ERPTALITGASRGIGAAIARELAPT--HTLLLGGRPAERLDE-LAAE--LPGATPFPVDLTDPEAIAAAVEQLGRLDVLV   76 (227)
T ss_pred             CCCEEEEecCCcHHHHHHHHHHHhh--CCEEEEeCCHHHHHH-HHHH--hccceEEecCCCCHHHHHHHHHhcCCCCEEE
Confidence            4579999999999999999999987  789999886433221 1111  2357889999998632        2599999


Q ss_pred             EccCCCCCccc----ccCchhHHHHHHHHHHH----HHHHHHHcCCeEEEEecceecC
Q 029656          103 HLACPASPIFY----KYNPVKTIKTNVIGTLN----MLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus       103 ~~ag~~~~~~~----~~~~~~~~~~n~~~~~~----l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      |++|.......    .+.....+++|+.+...    +++.+++...++|++||...++
T Consensus        77 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~  134 (227)
T PRK08219         77 HNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINSGAGLR  134 (227)
T ss_pred             ECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcchHhcC
Confidence            99987543211    12234457888888544    4445555556999999977654

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=99.55  E-value=1.4e-13  Score=106.14  Aligned_cols=120  Identities=18%  Similarity=0.100  Sum_probs=86.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      .+++++||||+|+||+++++.|+++ |+.|++..++.+.. +.....+.. ..++.++.+|+.+...            .
T Consensus         5 ~~~~~lItG~s~~iG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (247)
T PRK12935          5 NGKVAIVTGGAKGIGKAITVALAQE-GAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFG   83 (247)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999999999998 78887765543222 222222222 2468889999998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecceec
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~~  151 (190)
                      .+|+|||+||......    ..+..++.+++|+.++.++++++..    .+ .++|++||...+
T Consensus        84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~  147 (247)
T PRK12935         84 KVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQ  147 (247)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhc
Confidence            4899999999754321    1234567799999999999888864    23 389999996543

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=99.55  E-value=4.8e-14  Score=108.00  Aligned_cols=121  Identities=18%  Similarity=0.243  Sum_probs=91.1

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-cCCcCEEEEccCCCC--Cc
Q 029656           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-LIEVDQIYHLACPAS--PI  111 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~~~d~vi~~ag~~~--~~  111 (190)
                      |+||||||+||++|+..|.+. +|+|+++.|++......+..     .+.  ..+-.+.. ..++|+|||.||..-  -.
T Consensus         1 IliTGgTGlIG~~L~~~L~~~-gh~v~iltR~~~~~~~~~~~-----~v~--~~~~~~~~~~~~~DavINLAG~~I~~rr   72 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKG-GHQVTILTRRPPKASQNLHP-----NVT--LWEGLADALTLGIDAVINLAGEPIAERR   72 (297)
T ss_pred             CeEeccccchhHHHHHHHHhC-CCeEEEEEcCCcchhhhcCc-----ccc--ccchhhhcccCCCCEEEECCCCcccccc
Confidence            589999999999999999999 89999999987766543321     112  12222222 237999999999443  23


Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHcCC---eEEEEecceecCCCCCCCCCCCC
Q 029656          112 FYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESY  163 (190)
Q Consensus       112 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~vSS~~~~~~~~~~~~~e~~  163 (190)
                      |.+...+.+++--+..|..+.++.++...   .+|.-|.++.||......++|+.
T Consensus        73 Wt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~  127 (297)
T COG1090          73 WTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEES  127 (297)
T ss_pred             CCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCC
Confidence            56667788899999999999999886553   46666677789999888999984

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.55  E-value=8.2e-14  Score=106.92  Aligned_cols=121  Identities=15%  Similarity=0.018  Sum_probs=88.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ++++++|||++|+||+++++.|+++ |++|+++.|+.....+....+.. ..++.++.+|+.+...            .+
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKE-GVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGS   84 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            5689999999999999999999999 78999999875543332222221 2468889999988642            36


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceecC
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~~  152 (190)
                      +|+|||++|......    ..+...+.+++|+.++.++++.+..    .+. ++|++||...+.
T Consensus        85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~  148 (239)
T PRK07666         85 IDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQK  148 (239)
T ss_pred             ccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhcc
Confidence            999999998654321    1223456789999999988887753    333 799999876443

>PRK07102 short chain dehydrogenase; Provisional

Probab=99.55  E-value=8.9e-14  Score=107.05  Aligned_cols=117  Identities=13%  Similarity=0.092  Sum_probs=86.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc---------CCcCE
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL---------IEVDQ  100 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~---------~~~d~  100 (190)
                      ||+++||||+|+||+++++.|+++ |++|++++|+.+........+.  ...++.++++|+.+...         .++|+
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~   79 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAA-GARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI   79 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence            478999999999999999999999 8999999997654433333222  23478899999998642         24799


Q ss_pred             EEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecce
Q 029656          101 IYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSE  149 (190)
Q Consensus       101 vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~  149 (190)
                      |||++|.......    .+.....+++|+.++..+++.+..    .+. ++|++||..
T Consensus        80 vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~  137 (243)
T PRK07102         80 VLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVA  137 (243)
T ss_pred             EEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEeccc
Confidence            9999986543211    122345789999999999887754    343 899999864

>PRK08628 short chain dehydrogenase; Provisional

Probab=99.55  E-value=8.8e-14  Score=107.93  Aligned_cols=120  Identities=18%  Similarity=0.180  Sum_probs=88.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |+.|+++.|+.... .....+. ...++.++.+|+.+.+.            .
T Consensus         5 l~~~~ilItGasggiG~~la~~l~~~-G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK08628          5 LKDKVVIVTGGASGIGAAISLRLAEE-GAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFG   82 (258)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHc-CCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            57899999999999999999999999 88898888876543 2222221 13468899999998642            2


Q ss_pred             CcCEEEEccCCCCCcccc---cCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceec
Q 029656           97 EVDQIYHLACPASPIFYK---YNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~  151 (190)
                      .+|+|||+||.......+   +..+..+++|+.++.++.+.+.+    ...++|++||...+
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~  144 (258)
T PRK08628         83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTAL  144 (258)
T ss_pred             CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhc
Confidence            589999999964322111   33456789999999998887753    22489999996644

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.55  E-value=8.9e-14  Score=108.00  Aligned_cols=120  Identities=15%  Similarity=0.179  Sum_probs=87.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh--cCCceEEEecccccccc------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~------------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |+.|+++.|+ ...+ .+....  ...++.++.+|+.+.+.            
T Consensus        13 l~~k~vlItGas~gIG~~ia~~l~~~-G~~v~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~   89 (258)
T PRK06935         13 LDGKVAIVTGGNTGLGQGYAVALAKA-GADIIITTHG-TNWD-ETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF   89 (258)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCC-cHHH-HHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            36799999999999999999999999 8999998886 2222 222221  12468889999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecC
Q 029656           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~  152 (190)
                      ..+|++||+||......    ..+..+..+++|+.++..+.+.+.    +.+. ++|++||...+.
T Consensus        90 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~  155 (258)
T PRK06935         90 GKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQ  155 (258)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhcc
Confidence            25899999999654321    122455678999999888876664    3343 899999976553

>PRK06841 short chain dehydrogenase; Provisional

Probab=99.55  E-value=2.4e-13  Score=105.24  Aligned_cols=118  Identities=20%  Similarity=0.136  Sum_probs=87.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |+.|+++.|+... ......+ ....+..+.+|+.+...            .+
T Consensus        13 ~~~k~vlItGas~~IG~~la~~l~~~-G~~Vi~~~r~~~~-~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   89 (255)
T PRK06841         13 LSGKVAVVTGGASGIGHAIAELFAAK-GARVALLDRSEDV-AEVAAQL-LGGNAKGLVCDVSDSQSVEAAVAAVISAFGR   89 (255)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHH-HHHHHHh-hCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            46799999999999999999999998 8899999886542 1112222 23456788999998641            25


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEeccee
Q 029656           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~  150 (190)
                      +|+|||+||.......    .+..+..+++|+.++.++++.+..    .+ .++|++||...
T Consensus        90 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~  151 (255)
T PRK06841         90 IDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAG  151 (255)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhh
Confidence            8999999996543211    223455789999999999988754    23 38999999653

>PRK12742 oxidoreductase; Provisional

Probab=99.55  E-value=2e-13  Score=104.54  Aligned_cols=116  Identities=16%  Similarity=0.114  Sum_probs=82.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc--------cCCcCEE
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~d~v  101 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.++....   ...+.....+.++.+|+.|..        ..++|++
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~-G~~v~~~~~~~~~~---~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~l   79 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTD-GANVRFTYAGSKDA---AERLAQETGATAVQTDSADRDAVIDVVRKSGALDIL   79 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEecCCCHHH---HHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEE
Confidence            36789999999999999999999999 78887776543221   112211224567889998753        2358999


Q ss_pred             EEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029656          102 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus       102 i~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      ||+||......    ..+..+..+++|+.++.++++.+...   ..++|++||..
T Consensus        80 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~  134 (237)
T PRK12742         80 VVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVN  134 (237)
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            99998654211    12345678999999999987666543   24899999954

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.55  E-value=1.4e-13  Score=105.52  Aligned_cols=119  Identities=18%  Similarity=0.179  Sum_probs=87.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------CC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ++++++|||++|+||+++++.|+++ |+.|+++.|+..........+. ...++.++.+|+.|...            ..
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAAD-GAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGA   82 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5689999999999999999999999 8889999987554332222222 13468889999998642            24


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEeccee
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~  150 (190)
                      +|+|||++|......    ..+.....+++|+.++.++++.+.    +.+. ++|++||...
T Consensus        83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~  144 (246)
T PRK05653         83 LDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSG  144 (246)
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHh
Confidence            799999998654321    122345578999999999988884    4454 8999998653

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=99.55  E-value=1.5e-13  Score=106.63  Aligned_cols=119  Identities=17%  Similarity=0.147  Sum_probs=87.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |..|++++|+.+........+.. ..++.++.+|+.+.+.            .
T Consensus         9 l~~k~vlVtG~s~gIG~~la~~l~~~-G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   87 (255)
T PRK06113          9 LDGKCAIITGAGAGIGKEIAITFATA-GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLG   87 (255)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999999 88888888865443332222211 2367888999998642            3


Q ss_pred             CcCEEEEccCCCCCccc---ccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecce
Q 029656           97 EVDQIYHLACPASPIFY---KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~---~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~  149 (190)
                      ++|+|||+||...+...   .+..+..+++|+.++.++++++.    +.+. ++|++||..
T Consensus        88 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~  148 (255)
T PRK06113         88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMA  148 (255)
T ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEeccc
Confidence            58999999996543211   23345568999999999998885    3333 899999965

>PRK07825 short chain dehydrogenase; Provisional

Probab=99.55  E-value=1.6e-13  Score=107.45  Aligned_cols=118  Identities=19%  Similarity=0.064  Sum_probs=86.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++..|+.+........+   ..+.++.+|+.+.+.            .+
T Consensus         3 ~~~~~ilVtGasggiG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (273)
T PRK07825          3 LRGKVVAITGGARGIGLATARALAAL-GARVAIGDLDEALAKETAAEL---GLVVGGPLDVTDPASFAAFLDAVEADLGP   78 (273)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh---ccceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            35789999999999999999999999 889999888654332222221   147788999998642            35


Q ss_pred             cCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029656           98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                      +|++|||||........    +.....+++|+.++.++++.+.    +.+. ++|++||...+
T Consensus        79 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~  141 (273)
T PRK07825         79 IDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGK  141 (273)
T ss_pred             CCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCcccc
Confidence            89999999975432211    2244578999999888776653    4454 89999997644

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.54  E-value=7.7e-14  Score=108.12  Aligned_cols=120  Identities=12%  Similarity=0.046  Sum_probs=87.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+++||+++++.|+++ |++|+++.|+..  +.....+. ...++.++.+|+.+++.            .
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~-G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   82 (251)
T PRK12481          6 LNGKVAIITGCNTGLGQGMAIGLAKA-GADIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMG   82 (251)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999999 899988877532  11111111 13467889999998742            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceecC
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~~  152 (190)
                      ++|++|||||......    ..+.++..+++|+.++..+.+.+..    .+  .++|++||...+.
T Consensus        83 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~  148 (251)
T PRK12481         83 HIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQ  148 (251)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcC
Confidence            5999999999654321    2234556789999999888876642    32  4899999977554

>PRK09134 short chain dehydrogenase; Provisional

Probab=99.54  E-value=2.1e-13  Score=105.90  Aligned_cols=119  Identities=15%  Similarity=0.026  Sum_probs=83.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhhhhh-cCCceEEEecccccccc------------C
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      .+++++||||+|+||+++++.|+++ |+.|+++.++..... .....+. ....+.++.+|++|...            .
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   86 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAH-GFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALG   86 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            5689999999999999999999998 788877665432221 1112221 13468889999998532            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc----C-CeEEEEeccee
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G-ARILLTSTSEV  150 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~i~vSS~~~  150 (190)
                      ++|+||||||......    ..+..+..+++|+.++.++++.+...    . .++|+++|...
T Consensus        87 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~  149 (258)
T PRK09134         87 PITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRV  149 (258)
T ss_pred             CCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhh
Confidence            4899999998654321    22345667999999999999887643    2 26788876443

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=99.54  E-value=2.1e-13  Score=105.81  Aligned_cols=117  Identities=21%  Similarity=0.172  Sum_probs=85.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc------------C
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++||||+|+||+++++.|+++ |+.|++++|+..........+.   ....+.++.+|+.+...            .
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~-g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEE-GYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999 8999999887544333222221   12468899999998632            3


Q ss_pred             CcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecce
Q 029656           97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~  149 (190)
                      ++|+|||+||.......    .+..+..+++|+.++.++++.+.+    .+  .++|++||..
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~  143 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKS  143 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcc
Confidence            58999999986553221    223456689999998888776643    34  3899999854

>PRK09242 tropinone reductase; Provisional

Probab=99.54  E-value=1.3e-13  Score=107.04  Aligned_cols=122  Identities=11%  Similarity=0.085  Sum_probs=90.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEeccccccc------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~------------   94 (190)
                      +.+++++|||++|+||+.+++.|+++ |++|+++.|+.+.......++.   ...++.++.+|+.+..            
T Consensus         7 ~~~k~~lItGa~~gIG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (257)
T PRK09242          7 LDGQTALITGASKGIGLAIAREFLGL-GADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH   85 (257)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999 8999999987544333332222   1346888899999853            


Q ss_pred             cCCcCEEEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecceecC
Q 029656           95 LIEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVYG  152 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~~~  152 (190)
                      +.++|+|||+||.....    ...+..+..+.+|+.++.++++++.    +.+ .++|++||...+.
T Consensus        86 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~  152 (257)
T PRK09242         86 WDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLT  152 (257)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCC
Confidence            23699999999864321    1233455679999999999988774    344 3899999976554

>PRK07454 short chain dehydrogenase; Provisional

Probab=99.54  E-value=1.1e-13  Score=106.38  Aligned_cols=121  Identities=15%  Similarity=0.023  Sum_probs=88.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ++++++||||+|+||+.+++.|+++ |++|+++.|+.+........+.. ..++.++.+|+++...            .+
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKA-GWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5689999999999999999999999 78999999865433322222211 2468889999998642            25


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      +|+|||+||......    ..+.....+++|+.++.++++.+    .+.+. ++|++||...+.
T Consensus        84 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~  147 (241)
T PRK07454         84 PDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARN  147 (241)
T ss_pred             CCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCc
Confidence            899999998654321    11234556899999998887766    33443 899999987664

>PRK12747 short chain dehydrogenase; Provisional

Probab=99.54  E-value=1.4e-13  Score=106.45  Aligned_cols=121  Identities=15%  Similarity=0.081  Sum_probs=84.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEc-CCCCCChhhhhhhhc-CCceEEEecccccccc------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD-NYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~-r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|++. |+.|.+.. |+.+........+.. ...+..+.+|+.+...            
T Consensus         2 ~~~k~~lItGas~gIG~~ia~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (252)
T PRK12747          2 LKGKVALVTGASRGIGRAIAKRLAND-GALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL   80 (252)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHC-CCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHh
Confidence            46799999999999999999999999 88888764 332222222222211 2356778889987420            


Q ss_pred             ------CCcCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceec
Q 029656           96 ------IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVY  151 (190)
Q Consensus        96 ------~~~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~  151 (190)
                            .++|+||||||........    +..+..+++|+.++..+++++...   ..++|++||...+
T Consensus        81 ~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~  149 (252)
T PRK12747         81 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATR  149 (252)
T ss_pred             hhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccc
Confidence                  1699999999964322111    224567889999999999877543   2389999997654

>PRK07577 short chain dehydrogenase; Provisional

Probab=99.54  E-value=1.5e-13  Score=105.08  Aligned_cols=111  Identities=23%  Similarity=0.155  Sum_probs=82.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----------CCcC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----------IEVD   99 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----------~~~d   99 (190)
                      .+++++||||+|+||+++++.|+++ |++|+++.|+.....          ...++.+|+.+.+.           .++|
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~-G~~v~~~~r~~~~~~----------~~~~~~~D~~~~~~~~~~~~~~~~~~~~d   70 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANL-GHQVIGIARSAIDDF----------PGELFACDLADIEQTAATLAQINEIHPVD   70 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHC-CCEEEEEeCCccccc----------CceEEEeeCCCHHHHHHHHHHHHHhCCCc
Confidence            4689999999999999999999999 899999988654310          12567889988642           1589


Q ss_pred             EEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029656          100 QIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus       100 ~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      +|||++|.......    .+.....+++|+.++.++.+.+    ++.+. ++|++||...|+
T Consensus        71 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~  132 (234)
T PRK07577         71 AIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFG  132 (234)
T ss_pred             EEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccC
Confidence            99999997554221    2234557899999988876665    34444 899999977654

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=99.54  E-value=1.2e-13  Score=107.82  Aligned_cols=119  Identities=13%  Similarity=0.006  Sum_probs=88.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++|||++|+||+++++.|+++ |+.|+++.|+..........+.. ..++.++.+|+.+...            .
T Consensus         8 ~~~k~~lItGa~~~iG~~ia~~l~~~-G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   86 (265)
T PRK07097          8 LKGKIALITGASYGIGFAIAKAYAKA-GATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVG   86 (265)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            57799999999999999999999999 88899888865544333333322 2368889999998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecce
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~  149 (190)
                      .+|+||||||......    ..+..+..+++|+.++..+.+.+..    .+ .++|++||..
T Consensus        87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~  148 (265)
T PRK07097         87 VIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMM  148 (265)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCcc
Confidence            5899999999755321    2233556789999999888776643    34 3899999854

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=99.54  E-value=8.2e-14  Score=108.50  Aligned_cols=120  Identities=18%  Similarity=0.142  Sum_probs=86.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+........+  ..++.++++|+.+..            +.+
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   80 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAE-GARVAVLERSAEKLASLRQRF--GDHVLVVEGDVTSYADNQRAVDQTVDAFGK   80 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--CCcceEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            36789999999999999999999999 899999988654332222211  235788899999863            235


Q ss_pred             cCEEEEccCCCCCc--c---ccc----CchhHHHHHHHHHHHHHHHHHH----cCCeEEEEecceecC
Q 029656           98 VDQIYHLACPASPI--F---YKY----NPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~--~---~~~----~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~~~  152 (190)
                      +|++||+||.....  .   ..+    .++..+++|+.++..+++.+..    .+.++|++||...+.
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~  148 (263)
T PRK06200         81 LDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFY  148 (263)
T ss_pred             CCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcC
Confidence            99999999964321  1   111    1345678999999888877753    234799999976553

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.54  E-value=9.4e-14  Score=107.57  Aligned_cols=117  Identities=18%  Similarity=0.139  Sum_probs=82.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------CCcCEEEEc
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------IEVDQIYHL  104 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------~~~d~vi~~  104 (190)
                      +++++||||+|+||+++++.|+++ |+.|+++.|+............ ...++.++.+|+.|...      .++|+||||
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~   80 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARK-GHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN   80 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence            578999999999999999999999 8999999886433222111111 12357888899998642      279999999


Q ss_pred             cCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecce
Q 029656          105 ACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSE  149 (190)
Q Consensus       105 ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~  149 (190)
                      ||.......    .+..+..+++|+.++.++.+.+    .+.+. ++|++||..
T Consensus        81 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~  134 (257)
T PRK09291         81 AGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMA  134 (257)
T ss_pred             CCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChh
Confidence            996543221    1224456888998887666544    44444 899999865

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=99.54  E-value=2.1e-13  Score=106.38  Aligned_cols=113  Identities=22%  Similarity=0.215  Sum_probs=86.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.....        ..++.++.+|+.+...            ..
T Consensus         7 l~~k~vlItG~s~gIG~~la~~l~~~-G~~v~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   77 (266)
T PRK06171          7 LQGKIIIVTGGSSGIGLAIVKELLAN-GANVVNADIHGGDGQ--------HENYQFVPTDVSSAEEVNHTVAEIIEKFGR   77 (266)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCccccc--------cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999 899999988654432        2367888999998642            35


Q ss_pred             cCEEEEccCCCCCc-------------ccccCchhHHHHHHHHHHHHHHHHHHc----C-CeEEEEecceec
Q 029656           98 VDQIYHLACPASPI-------------FYKYNPVKTIKTNVIGTLNMLGLAKRV----G-ARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~-------------~~~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~i~vSS~~~~  151 (190)
                      +|+|||+||...+.             ...+.++..+++|+.++.++++++...    + .++|++||...+
T Consensus        78 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~  149 (266)
T PRK06171         78 IDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGL  149 (266)
T ss_pred             CCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEcccccc
Confidence            89999999964321             112334567899999999998887542    3 379999997654

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=99.54  E-value=3.1e-13  Score=104.67  Aligned_cols=119  Identities=18%  Similarity=0.078  Sum_probs=88.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+.......++.. ..++.++.+|+.+.+.            .
T Consensus         7 l~~k~~lItGas~giG~~ia~~L~~~-G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (254)
T PRK08085          7 LAGKNILITGSAQGIGFLLATGLAEY-GAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIG   85 (254)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence            46789999999999999999999999 89999999875544333333322 2357788899998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecce
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~  149 (190)
                      ++|+|||+||......    ..+.++..+++|+.++.++++.+..    .+ .++|++||..
T Consensus        86 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~  147 (254)
T PRK08085         86 PIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQ  147 (254)
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccch
Confidence            5899999999653211    1234556799999999888887653    33 3899999864

>PRK12829 short chain dehydrogenase; Provisional

Probab=99.54  E-value=1.6e-13  Score=106.64  Aligned_cols=118  Identities=23%  Similarity=0.234  Sum_probs=85.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+..... .......++.++.+|+.++..            .+
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~-g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEA-GARVHVCDVSEAALAAT-AARLPGAKVTATVADVADPAQVERVFDTAVERFGG   86 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHH-HHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            47799999999999999999999999 88999999865433322 221222256888999998642            36


Q ss_pred             cCEEEEccCCCCCc-----ccccCchhHHHHHHHHHHHHHHHHH----HcCC--eEEEEecce
Q 029656           98 VDQIYHLACPASPI-----FYKYNPVKTIKTNVIGTLNMLGLAK----RVGA--RILLTSTSE  149 (190)
Q Consensus        98 ~d~vi~~ag~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~--~~i~vSS~~  149 (190)
                      +|+|||+||...+.     ...+.....+++|+.++..+++.+.    ..+.  +++++||..
T Consensus        87 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~  149 (264)
T PRK12829         87 LDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVA  149 (264)
T ss_pred             CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccc
Confidence            89999999965221     1223456789999999999888763    3333  577777644

>PRK05650 short chain dehydrogenase; Provisional

Probab=99.54  E-value=2.2e-13  Score=106.58  Aligned_cols=119  Identities=20%  Similarity=0.137  Sum_probs=86.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CCcC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~~d   99 (190)
                      |+++||||+|+||+++++.|+++ |.+|++++|+.+........+.. ...+.++.+|+.+...            .++|
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id   79 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWARE-GWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID   79 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            57999999999999999999999 88999998876554443333322 3467889999998632            3599


Q ss_pred             EEEEccCCCCCccccc----CchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029656          100 QIYHLACPASPIFYKY----NPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~----~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      +|||+||.......++    ..+..+++|+.++.++.+.+    .+.+. ++|++||...+.
T Consensus        80 ~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~  141 (270)
T PRK05650         80 VIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLM  141 (270)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcC
Confidence            9999999765432222    23446889988888766654    45554 899999976543

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=99.54  E-value=1.4e-13  Score=105.78  Aligned_cols=118  Identities=15%  Similarity=0.090  Sum_probs=86.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |+.|.+..|+.+........+  ..++.++.+|+.+...            .+
T Consensus         4 ~~~~~vlItGa~g~iG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T PRK12936          4 LSGRKALVTGASGGIGEEIARLLHAQ-GAIVGLHGTRVEKLEALAAEL--GERVKIFPANLSDRDEVKALGQKAEADLEG   80 (245)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            36789999999999999999999999 788888877544333222222  2467888999998642            35


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEeccee
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~  150 (190)
                      +|+||||||...+..    ..+.++..+++|+.++.++++++.+    .+ .++|++||...
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~  142 (245)
T PRK12936         81 VDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVG  142 (245)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHh
Confidence            999999999754321    2234556789999999988887642    33 38999999653

>PRK08226 short chain dehydrogenase; Provisional

Probab=99.54  E-value=2.7e-13  Score=105.44  Aligned_cols=118  Identities=17%  Similarity=0.142  Sum_probs=85.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.. .......+. ...++.++.+|+.+...            .
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~-G~~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARH-GANLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            36799999999999999999999999 889999988653 222222222 13467889999998632            3


Q ss_pred             CcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecce
Q 029656           97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~  149 (190)
                      ++|+|||+||.......    .+..++.+++|+.++.++++.+..    .+ .++|++||..
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~  143 (263)
T PRK08226         82 RIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVT  143 (263)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHH
Confidence            58999999996543221    223445789999999998887653    23 3899999854

>PRK12937 short chain dehydrogenase; Provisional

Probab=99.54  E-value=1.5e-13  Score=105.68  Aligned_cols=121  Identities=25%  Similarity=0.164  Sum_probs=86.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh-hhhh-cCCceEEEecccccccc------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      .++++++||||+|+||+++++.|+++ |+.++++.|+.......+ ..+. ...++.++.+|+.+...            
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAAD-GFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAF   81 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            36789999999999999999999999 788877766543222211 1121 13468899999998632            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc--C-CeEEEEecceec
Q 029656           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV--G-ARILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~--~-~~~i~vSS~~~~  151 (190)
                      .++|+|||+||......    ..+..+..+++|+.++.++++.+.+.  . .++|++||...+
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~  144 (245)
T PRK12937         82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIA  144 (245)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeecccc
Confidence            25999999999654211    12234567899999999998887653  2 389999986543

>PRK07904 short chain dehydrogenase; Provisional

Probab=99.54  E-value=3.5e-13  Score=104.68  Aligned_cols=119  Identities=16%  Similarity=0.131  Sum_probs=85.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC-Chhhhhhhhc--CCceEEEecccccccc-----------C
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIG--HPRFELIRHDVTEPLL-----------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~-~~~~~~~~~~--~~~~~~~~~D~~~~~~-----------~   96 (190)
                      .+++++||||+|+||+++++.|+++++++|+++.|+.+. ......++..  ..++.++.+|+.|...           .
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g   86 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG   86 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence            568999999999999999999999955899999987664 3333333322  2368899999998542           2


Q ss_pred             CcCEEEEccCCCCCccc-ccCc---hhHHHHHHHHHHHH----HHHHHHcCC-eEEEEecce
Q 029656           97 EVDQIYHLACPASPIFY-KYNP---VKTIKTNVIGTLNM----LGLAKRVGA-RILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~-~~~~---~~~~~~n~~~~~~l----~~~~~~~~~-~~i~vSS~~  149 (190)
                      ++|++||++|....... ....   .+.+++|+.++..+    ++.+.+.+. ++|++||..
T Consensus        87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~  148 (253)
T PRK07904         87 DVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVA  148 (253)
T ss_pred             CCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechh
Confidence            69999999987543211 1111   24689999988764    555566554 899999965

>PRK12939 short chain dehydrogenase; Provisional

Probab=99.54  E-value=1.4e-13  Score=106.08  Aligned_cols=121  Identities=22%  Similarity=0.186  Sum_probs=88.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++|||++|+||+++++.|+++ |++|+++.|+.+........+.. ..++.++.+|+.+...            .
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   83 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEA-GATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALG   83 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            36799999999999999999999999 88999988865443333333221 2468889999998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceec
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~  151 (190)
                      ++|+|||++|......    .....+..+++|+.++.++++.+.+    .+. ++|++||...+
T Consensus        84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~  147 (250)
T PRK12939         84 GLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTAL  147 (250)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhc
Confidence            6999999999654321    1223445688999999999887743    223 89999996644

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.53  E-value=2.5e-13  Score=104.87  Aligned_cols=121  Identities=15%  Similarity=0.009  Sum_probs=84.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC-CChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT-GSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~-~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      .+++++||||+|+||+++++.|+++ +++|++..|+.. ........+.. ...+.++.+|+.+...            .
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKE-GSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYG   83 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence            5689999999999999999999998 788777665332 11222222211 2356788899988642            3


Q ss_pred             CcCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecC
Q 029656           97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~  152 (190)
                      ++|+|||+||........    ...+..+++|+.+..++++++.+.   ..++|++||...+.
T Consensus        84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~  146 (252)
T PRK06077         84 VADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR  146 (252)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC
Confidence            589999999964432211    123467899999999998888653   23899999977653

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=99.53  E-value=1.2e-13  Score=107.08  Aligned_cols=120  Identities=13%  Similarity=0.080  Sum_probs=87.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++|||++|.||+++++.|++. |+.|+++.+...  .+....+.. ..++..+++|+.|.+.            .
T Consensus         8 l~~k~~lItG~~~gIG~a~a~~l~~~-G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (253)
T PRK08993          8 LEGKVAVVTGCDTGLGQGMALGLAEA-GCDIVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFG   84 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            47899999999999999999999999 889888766432  222222221 2467888999998532            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceecC
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~~  152 (190)
                      ++|++|||||......    ..++++..+++|+.++.++++++..    .+  .++|++||...+.
T Consensus        85 ~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~  150 (253)
T PRK08993         85 HIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQ  150 (253)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhcc
Confidence            5999999999654321    2234667899999999988887743    22  3899999977654

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.53  E-value=2.5e-13  Score=104.27  Aligned_cols=119  Identities=19%  Similarity=0.152  Sum_probs=86.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhh-hh-cCCceEEEecccccccc------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-WI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~-~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      +.+++++|||++|+||+++++.|+++ |+.|+++.|+.......... +. ...++.++.+|+.+.+.            
T Consensus         3 ~~~~~vlItG~sg~iG~~l~~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (248)
T PRK05557          3 LEGKVALVTGASRGIGRAIAERLAAQ-GANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEF   81 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46689999999999999999999999 88887777765432222222 21 23468888899998642            


Q ss_pred             CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHHc----CC-eEEEEecce
Q 029656           96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~~i~vSS~~  149 (190)
                      .++|+|||+||.......    .+.++..+++|+.++.++++.+...    +. ++|++||..
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~  144 (248)
T PRK05557         82 GGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVV  144 (248)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccc
Confidence            358999999986553221    2234567889999999998888643    33 799999864

>PRK07677 short chain dehydrogenase; Provisional

Probab=99.53  E-value=1.4e-13  Score=106.51  Aligned_cols=118  Identities=14%  Similarity=0.119  Sum_probs=85.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------CCc
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      +++++||||+|+||+++++.|+++ |+.|++++|+..........+. ...++.++++|+++++.            ..+
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~-G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEE-GANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI   79 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            478999999999999999999999 8899999887543332222221 12468889999998632            358


Q ss_pred             CEEEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEeccee
Q 029656           99 DQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEV  150 (190)
Q Consensus        99 d~vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~  150 (190)
                      |+|||+||.....    .+.+.++..+++|+.++.++++++.+    .+  .++|++||...
T Consensus        80 d~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~  141 (252)
T PRK07677         80 DALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYA  141 (252)
T ss_pred             cEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhh
Confidence            9999999854321    12223456799999999999988842    22  37999998653

>PLN02780 ketoreductase/ oxidoreductase

Probab=99.53  E-value=1.6e-13  Score=110.16  Aligned_cols=120  Identities=18%  Similarity=0.142  Sum_probs=86.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc---CCceEEEecccccc--c--------c--
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEP--L--------L--   95 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~--~--------~--   95 (190)
                      .++.++||||+|+||+++++.|+++ |++|++++|+.+.......++..   ...+..+.+|+.+.  +        .  
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~-G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~  130 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARK-GLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG  130 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence            5789999999999999999999999 88999999976554433333321   24677788898742  1        1  


Q ss_pred             CCcCEEEEccCCCCCc---cc---ccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecceec
Q 029656           96 IEVDQIYHLACPASPI---FY---KYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~---~~---~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~~  151 (190)
                      .++|++|||||...+.   ..   .+..+..+++|+.++..+.+++.    +.+ .++|++||...+
T Consensus       131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~  197 (320)
T PLN02780        131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAI  197 (320)
T ss_pred             CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhc
Confidence            1366999999975421   11   12344579999999998888764    334 389999997654

>PRK08278 short chain dehydrogenase; Provisional

Probab=99.53  E-value=4.9e-13  Score=104.87  Aligned_cols=118  Identities=14%  Similarity=0.043  Sum_probs=85.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh---hhh----hhh-cCCceEEEecccccccc------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---NLR----KWI-GHPRFELIRHDVTEPLL------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~---~~~----~~~-~~~~~~~~~~D~~~~~~------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+....   .+.    .+. ...++.++.+|+++.+.      
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~   82 (273)
T PRK08278          4 LSGKTLFITGASRGIGLAIALRAARD-GANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVA   82 (273)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH
Confidence            35789999999999999999999999 8899999887543211   111    111 12467889999998642      


Q ss_pred             ------CCcCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecc
Q 029656           96 ------IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTS  148 (190)
Q Consensus        96 ------~~~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~  148 (190)
                            .++|+|||+||........    +..+..+++|+.++.++++++..    .+ .++|++||.
T Consensus        83 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~  150 (273)
T PRK08278         83 KAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPP  150 (273)
T ss_pred             HHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence                  2699999999965432222    23456789999999999998853    22 378888873

>PRK06172 short chain dehydrogenase; Provisional

Probab=99.53  E-value=2.3e-13  Score=105.32  Aligned_cols=122  Identities=20%  Similarity=0.145  Sum_probs=88.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++|||++|+||.++++.|+++ |++|+++.|+.+........+.. ..++..+.+|+.+...            .
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g   83 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFARE-GAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYG   83 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            36799999999999999999999999 78999999876543333332221 2468889999998632            2


Q ss_pred             CcCEEEEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029656           97 EVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      ++|+|||++|.....  .   ..+.+++.+++|+.++..+++.+    .+.+. ++|++||...+.
T Consensus        84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~  149 (253)
T PRK06172         84 RLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLG  149 (253)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcc
Confidence            579999999864321  1   22345567899999998776654    33443 899999976554

>PRK12828 short chain dehydrogenase; Provisional

Probab=99.53  E-value=1.2e-13  Score=105.50  Aligned_cols=122  Identities=17%  Similarity=0.085  Sum_probs=89.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++|||++|+||+++++.|+++ |+.|+++.|+.....+....+. ...+..+.+|+.|...            .+
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAAR-GARVALIGRGAAPLSQTLPGVP-ADALRIGGIDLVDPQAARRAVDEVNRQFGR   82 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHC-CCeEEEEeCChHhHHHHHHHHh-hcCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            35789999999999999999999999 8899999997655444333332 2356778899988532            25


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceecCC
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYGD  153 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~~~  153 (190)
                      +|+|||++|......    ..+...+.+++|+.++.++++++.    +.+. ++|++||...+..
T Consensus        83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~  147 (239)
T PRK12828         83 LDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKA  147 (239)
T ss_pred             cCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccC
Confidence            899999998643221    122234568899999999888774    3344 8999999876653

>PRK06114 short chain dehydrogenase; Provisional

Probab=99.52  E-value=3.4e-13  Score=104.55  Aligned_cols=121  Identities=16%  Similarity=0.050  Sum_probs=87.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhhc-CCceEEEecccccccc------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG-HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~~-~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+.. ......+.. ..++.++.+|+.++..            
T Consensus         6 ~~~k~~lVtG~s~gIG~~ia~~l~~~-G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~   84 (254)
T PRK06114          6 LDGQVAFVTGAGSGIGQRIAIGLAQA-GADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAEL   84 (254)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46799999999999999999999999 88999998865432 222222221 2367888999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecceec
Q 029656           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                      .++|+||||||......    ..+..+..+++|+.++..+++++.    +.+. ++|++||...+
T Consensus        85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~  149 (254)
T PRK06114         85 GALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGI  149 (254)
T ss_pred             CCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhc
Confidence            35899999999654321    123455678999999988877653    3343 89999986643

>PRK07074 short chain dehydrogenase; Provisional

Probab=99.52  E-value=2.9e-13  Score=104.97  Aligned_cols=116  Identities=18%  Similarity=0.148  Sum_probs=84.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCcC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD   99 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~d   99 (190)
                      +++++||||+|+||+++++.|+++ |++|++++|+..........+ ...++.++.+|+.+.+.            .++|
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~-g~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   79 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAA-GDRVLALDIDAAALAAFADAL-GDARFVPVACDLTDAASLAAALANAAAERGPVD   79 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            578999999999999999999998 889999998654433322222 23468889999998742            2489


Q ss_pred             EEEEccCCCCCccc-ccC---chhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecce
Q 029656          100 QIYHLACPASPIFY-KYN---PVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSE  149 (190)
Q Consensus       100 ~vi~~ag~~~~~~~-~~~---~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~  149 (190)
                      +|||++|....... +.+   ....+.+|+.++.++++.+.    +.+. ++|++||..
T Consensus        80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~  138 (257)
T PRK07074         80 VLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVN  138 (257)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchh
Confidence            99999986543211 112   23457799999998888773    3343 799999854

>PRK07576 short chain dehydrogenase; Provisional

Probab=99.52  E-value=2.4e-13  Score=106.09  Aligned_cols=120  Identities=18%  Similarity=0.157  Sum_probs=86.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+.+ |+.|+++.|+.+........+.. ..++.++.+|+++...            .
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~   85 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFARA-GANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFG   85 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            36789999999999999999999998 89999999875443322222211 2356788999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEeccee
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEV  150 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~  150 (190)
                      ++|+|||+||......    ..+.....+++|+.++.++++++..    .+.++|++||...
T Consensus        86 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~  147 (264)
T PRK07576         86 PIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQA  147 (264)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhh
Confidence            5899999998543211    1223455788999999999887754    2348999999653

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=99.52  E-value=3.2e-13  Score=104.69  Aligned_cols=121  Identities=15%  Similarity=0.100  Sum_probs=89.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+.+++.|+++ |+.|+++.|+.+........+.. ..++.++.+|+.++..            .
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   87 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGA-GAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHG   87 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            57899999999999999999999998 89999999975433332222221 3468889999998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceec
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~  151 (190)
                      ++|+|||++|......    ..+..++.+++|+.++.++++.+.+    .+. ++|++||...+
T Consensus        88 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~  151 (256)
T PRK06124         88 RLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQ  151 (256)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhc
Confidence            5899999999654321    1223456789999999998876643    444 89999996543

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=99.52  E-value=2e-13  Score=106.27  Aligned_cols=119  Identities=20%  Similarity=0.158  Sum_probs=85.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+.... +... ...++.++.+|+.+...            .+
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~-l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAE-GARVAVLDKSAAGLQE-LEAA-HGDAVVGVEGDVRSLDDHKEAVARCVAAFGK   79 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHH-HHhh-cCCceEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence            36799999999999999999999999 8999999886533222 1111 12357888999998531            35


Q ss_pred             cCEEEEccCCCCCc--c---cc----cCchhHHHHHHHHHHHHHHHHHHc----CCeEEEEecceec
Q 029656           98 VDQIYHLACPASPI--F---YK----YNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~--~---~~----~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~vSS~~~~  151 (190)
                      +|++|||||.....  .   ..    +.++..+++|+.++.++++++.+.    +.++|++||...+
T Consensus        80 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~  146 (262)
T TIGR03325        80 IDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGF  146 (262)
T ss_pred             CCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEecccee
Confidence            89999999864211  1   11    124567999999999998888542    2378888886543

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.52  E-value=4.3e-13  Score=103.77  Aligned_cols=104  Identities=17%  Similarity=0.123  Sum_probs=76.2

Q ss_pred             cccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEE
Q 029656           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIY  102 (190)
Q Consensus        28 ~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi  102 (190)
                      +.+++++++||||+|+||+++++.|+++ |++|+++.|+......   ..... ....+.+|+.+.+     +.++|++|
T Consensus        10 ~~l~~k~~lITGas~gIG~ala~~l~~~-G~~Vi~~~r~~~~~~~---~~~~~-~~~~~~~D~~~~~~~~~~~~~iDilV   84 (245)
T PRK12367         10 STWQGKRIGITGASGALGKALTKAFRAK-GAKVIGLTHSKINNSE---SNDES-PNEWIKWECGKEESLDKQLASLDVLI   84 (245)
T ss_pred             HhhCCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEECCchhhhh---hhccC-CCeEEEeeCCCHHHHHHhcCCCCEEE
Confidence            3357799999999999999999999999 8899988886522111   11111 2256788998764     34699999


Q ss_pred             EccCCCCCc-ccccCchhHHHHHHHHHHHHHHHHH
Q 029656          103 HLACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAK  136 (190)
Q Consensus       103 ~~ag~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~  136 (190)
                      ||||..... ...+.+...+++|+.++.++++.+.
T Consensus        85 nnAG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~  119 (245)
T PRK12367         85 LNHGINPGGRQDPENINKALEINALSSWRLLELFE  119 (245)
T ss_pred             ECCccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence            999964322 2234566789999999999988774

>PRK07060 short chain dehydrogenase; Provisional

Probab=99.52  E-value=3.9e-13  Score=103.32  Aligned_cols=118  Identities=20%  Similarity=0.150  Sum_probs=86.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------CCcCEE
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d~v  101 (190)
                      +++++++|||++|+||+++++.|+++ |++|+++.|+.+...    .+.......++.+|+.+...        .++|+|
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~~~-g~~V~~~~r~~~~~~----~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~v   81 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALAQR-GARVVAAARNAAALD----RLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGL   81 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHC-CCEEEEEeCCHHHHH----HHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEE
Confidence            46789999999999999999999999 889999998654322    22112245778899988642        258999


Q ss_pred             EEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc----C--CeEEEEecceecC
Q 029656          102 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G--ARILLTSTSEVYG  152 (190)
Q Consensus       102 i~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~i~vSS~~~~~  152 (190)
                      ||+||......    ..+..++.+.+|+.++.++++++.+.    +  .++|++||...+.
T Consensus        82 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~  142 (245)
T PRK07060         82 VNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALV  142 (245)
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcC
Confidence            99998654321    12334556789999999998887542    2  4899999976554

>PRK12743 oxidoreductase; Provisional

Probab=99.52  E-value=2.6e-13  Score=105.34  Aligned_cols=117  Identities=15%  Similarity=0.045  Sum_probs=84.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh-hhhh-cCCceEEEecccccccc------------CC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++||||+|+||+++++.|+++ |++|+++.++.......+ ..+. ....+.++.+|+.+.+.            ..
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQ-GFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR   80 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999 889888765433222222 2221 13468899999998642            35


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc----C--CeEEEEecce
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----G--ARILLTSTSE  149 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~i~vSS~~  149 (190)
                      +|+|||++|......    ..+..+..+.+|+.++..+++++...    +  .++|++||..
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~  142 (256)
T PRK12743         81 IDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVH  142 (256)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecc
Confidence            899999998654321    12345567999999999998877542    2  3899999853

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=99.52  E-value=1.6e-13  Score=99.64  Aligned_cols=119  Identities=18%  Similarity=0.200  Sum_probs=88.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC--CCCChhhhhhhh-cCCceEEEecccccccc------------CC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY--FTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~--~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      |+++||||++.||+++++.|+++++..|+++.|+  .+........+. ...++.++++|+.+.+.            ..
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5799999999999999999999955688888886  222222222222 24688999999998742            35


Q ss_pred             cCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceec
Q 029656           98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~  151 (190)
                      +|++|||+|........    +..+..+++|+.+...+.+.+...+. ++|++||....
T Consensus        81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~  139 (167)
T PF00106_consen   81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGV  139 (167)
T ss_dssp             ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGT
T ss_pred             ccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhc
Confidence            99999999977643222    23446799999999999998887544 89999996543

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.52  E-value=3.1e-13  Score=107.76  Aligned_cols=121  Identities=19%  Similarity=0.068  Sum_probs=87.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhhhhhc-CCceEEEeccccccc-----------cC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIG-HPRFELIRHDVTEPL-----------LI   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~~-~~~~~~~~~D~~~~~-----------~~   96 (190)
                      +++++++||||+|+||+++++.|+++ |..|++.++...... .....+.. ..++.++.+|+.+.+           +.
T Consensus        10 l~~k~~lVTGas~gIG~~ia~~L~~~-Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g   88 (306)
T PRK07792         10 LSGKVAVVTGAAAGLGRAEALGLARL-GATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLG   88 (306)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHC-CCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            57899999999999999999999999 888888877543222 22222221 346888999999852           23


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----c-------C-CeEEEEecceec
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----V-------G-ARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~-------~-~~~i~vSS~~~~  151 (190)
                      ++|+||||||......    ..+.+...+++|+.++.++++++..    .       . .++|++||...+
T Consensus        89 ~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  159 (306)
T PRK07792         89 GLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGL  159 (306)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccc
Confidence            5899999999765421    2234556789999999999887642    1       1 379999986543

>PRK12320 hypothetical protein; Provisional

Probab=99.52  E-value=1.2e-13  Score=119.70  Aligned_cols=99  Identities=26%  Similarity=0.397  Sum_probs=80.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc----CCcCEEEEccCCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL----IEVDQIYHLACPA  108 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~----~~~d~vi~~ag~~  108 (190)
                      |+|+||||+||||+++++.|+++ |++|++++|.....        ....++++.+|+.+...    .++|+|||+|+..
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~-G~~Vi~ldr~~~~~--------~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~   71 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAA-GHTVSGIAQHPHDA--------LDPRVDYVCASLRNPVLQELAGEADAVIHLAPVD   71 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-CCEEEEEeCChhhc--------ccCCceEEEccCCCHHHHHHhcCCCEEEEcCccC
Confidence            57999999999999999999999 89999998854321        12367889999988642    4799999999753


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecc
Q 029656          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS  148 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~  148 (190)
                      ..        ....+|+.++.+++++|++.++|+||+||.
T Consensus        72 ~~--------~~~~vNv~Gt~nLleAA~~~GvRiV~~SS~  103 (699)
T PRK12320         72 TS--------APGGVGITGLAHVANAAARAGARLLFVSQA  103 (699)
T ss_pred             cc--------chhhHHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            21        113589999999999999999999999986

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.51  E-value=3.9e-13  Score=104.28  Aligned_cols=122  Identities=16%  Similarity=0.074  Sum_probs=86.1

Q ss_pred             cCCCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCCC-----------CChhhhhhhh-cCCceEEEecccccccc
Q 029656           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFT-----------GSKDNLRKWI-GHPRFELIRHDVTEPLL   95 (190)
Q Consensus        30 ~~~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~~-----------~~~~~~~~~~-~~~~~~~~~~D~~~~~~   95 (190)
                      +++++++||||+|  .||.++++.|+++ |++|+++.|+..           ........+. ...++.++.+|+.+...
T Consensus         3 l~~k~vlItGas~~~giG~~la~~l~~~-G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   81 (256)
T PRK12748          3 LMKKIALVTGASRLNGIGAAVCRRLAAK-GIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYA   81 (256)
T ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHHc-CCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence            3678999999995  7999999999999 789999988621           1111111111 12468899999998642


Q ss_pred             ------------CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHHc----C-CeEEEEecceecC
Q 029656           96 ------------IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV----G-ARILLTSTSEVYG  152 (190)
Q Consensus        96 ------------~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~----~-~~~i~vSS~~~~~  152 (190)
                                  ..+|+|||+||.......    .+..+..+++|+.++.++++++...    + .++|++||...+.
T Consensus        82 ~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~  159 (256)
T PRK12748         82 PNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLG  159 (256)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccC
Confidence                        358999999986543211    2234567899999999999887542    3 3899999976544

>PRK05867 short chain dehydrogenase; Provisional

Probab=99.51  E-value=2.7e-13  Score=105.05  Aligned_cols=119  Identities=17%  Similarity=0.081  Sum_probs=86.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.|+.+........+.. ..++..+.+|+.++..            .
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEA-GAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELG   85 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46799999999999999999999999 89999998865443333222221 2467888999998642            3


Q ss_pred             CcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecce
Q 029656           97 EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~  149 (190)
                      ++|+||||||.......    .+..+..+++|+.++..+++++..    .+  .++|++||..
T Consensus        86 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~  148 (253)
T PRK05867         86 GIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMS  148 (253)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHH
Confidence            69999999996543211    223445689999999999887742    22  3688998854

>PRK06123 short chain dehydrogenase; Provisional

Probab=99.51  E-value=3.4e-13  Score=103.88  Aligned_cols=118  Identities=15%  Similarity=0.072  Sum_probs=81.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh-hhhh-cCCceEEEecccccccc------------CC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++||||+|+||+++++.|+++ |+.|.+..++.+.....+ ..+. ....+.++.+|+.|...            ..
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~-G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAER-GYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR   80 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHC-CCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence            468999999999999999999999 777777664432221112 1121 12357789999998642            25


Q ss_pred             cCEEEEccCCCCCcc-----cccCchhHHHHHHHHHHHHHHHHHHc--------CCeEEEEeccee
Q 029656           98 VDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV--------GARILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~--------~~~~i~vSS~~~  150 (190)
                      +|+|||+||......     ..+.....+++|+.++.++++.+.+.        +.++|++||...
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~  146 (248)
T PRK06123         81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAA  146 (248)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhh
Confidence            899999999754321     11234467999999999988877542        126999999754

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.51  E-value=1.8e-13  Score=105.22  Aligned_cols=122  Identities=16%  Similarity=0.082  Sum_probs=88.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhhc-CCceEEEecccccccc------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++ .|+..........+.. ..++.++.+|+.+...            
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~-g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKE-GAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKF   81 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            36789999999999999999999998 8888888 7765443332222221 3468889999998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecceecC
Q 029656           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~~~~  152 (190)
                      .++|+|||++|......    ..+..+..+++|+.++.++++.+..    .+. ++|++||...+.
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~  147 (247)
T PRK05565         82 GKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLI  147 (247)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhcc
Confidence            26999999999763221    1223456789999998888877753    333 799999976443

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=99.51  E-value=1.3e-14  Score=108.84  Aligned_cols=145  Identities=21%  Similarity=0.215  Sum_probs=105.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------CCcCEEE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIY  102 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi  102 (190)
                      .--+|+|||+-|.+|..+++.|..+-|. .|++.+-. +.....+      ..-.++..|+.|...       .++|.+|
T Consensus        43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~-KPp~~V~------~~GPyIy~DILD~K~L~eIVVn~RIdWL~  115 (366)
T KOG2774|consen   43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIV-KPPANVT------DVGPYIYLDILDQKSLEEIVVNKRIDWLV  115 (366)
T ss_pred             CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhcc-CCchhhc------ccCCchhhhhhccccHHHhhcccccceee
Confidence            4468999999999999999999998454 44444332 2222211      133556677777532       3699999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhHH
Q 029656          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIM  182 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~s  182 (190)
                      |..+..+. ..+.+-....++|+.|..|+++.+++++.++...|+.++||+..+..-+.+.    +..++...|   |.|
T Consensus       116 HfSALLSA-vGE~NVpLA~~VNI~GvHNil~vAa~~kL~iFVPSTIGAFGPtSPRNPTPdl----tIQRPRTIY---GVS  187 (366)
T KOG2774|consen  116 HFSALLSA-VGETNVPLALQVNIRGVHNILQVAAKHKLKVFVPSTIGAFGPTSPRNPTPDL----TIQRPRTIY---GVS  187 (366)
T ss_pred             eHHHHHHH-hcccCCceeeeecchhhhHHHHHHHHcCeeEeecccccccCCCCCCCCCCCe----eeecCceee---chh
Confidence            99764332 2355666678999999999999999999999999999999986654433332    677788888   888


Q ss_pred             HHhhhhcC
Q 029656          183 KLIGELGG  190 (190)
Q Consensus       183 K~~~E~~~  190 (190)
                      |..+|..|
T Consensus       188 KVHAEL~G  195 (366)
T KOG2774|consen  188 KVHAELLG  195 (366)
T ss_pred             HHHHHHHH
Confidence            99999754

>PRK09072 short chain dehydrogenase; Provisional

Probab=99.51  E-value=4.8e-13  Score=104.20  Aligned_cols=120  Identities=13%  Similarity=0.083  Sum_probs=88.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----------CCc
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----------IEV   98 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----------~~~   98 (190)
                      +++++++||||+|+||+++++.|+++ |++|++++|+.+........+....++.++.+|+.|...           ..+
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i   81 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAA-GARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGI   81 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCC
Confidence            35789999999999999999999999 899999998754433333333224578899999998642           358


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEeccee
Q 029656           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEV  150 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~  150 (190)
                      |+|||+||......    ..+.....+++|+.++.++++.+.+    .+ .++|++||...
T Consensus        82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~  142 (263)
T PRK09072         82 NVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFG  142 (263)
T ss_pred             CEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhh
Confidence            99999998654321    1123456788999999999888753    33 37888888553

>PRK12744 short chain dehydrogenase; Provisional

Probab=99.51  E-value=5.2e-13  Score=103.64  Aligned_cols=117  Identities=14%  Similarity=0.108  Sum_probs=80.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhh----hhhc-CCceEEEecccccccc---------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR----KWIG-HPRFELIRHDVTEPLL---------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~----~~~~-~~~~~~~~~D~~~~~~---------   95 (190)
                      +++++++|||++|+||+++++.|+++ |+.|.++.++.........    .+.. ..++.++++|+.+.+.         
T Consensus         6 l~~k~vlItGa~~gIG~~~a~~l~~~-G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~   84 (257)
T PRK12744          6 LKGKVVLIAGGAKNLGGLIARDLAAQ-GAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAK   84 (257)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHC-CCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHH
Confidence            36789999999999999999999998 7776666544332222211    1111 2368889999998632         


Q ss_pred             ---CCcCEEEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEec
Q 029656           96 ---IEVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTST  147 (190)
Q Consensus        96 ---~~~d~vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS  147 (190)
                         .++|+|||+||.....    ...+..+..+++|+.++..+++.+...   ..++++++|
T Consensus        85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~s  146 (257)
T PRK12744         85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVT  146 (257)
T ss_pred             HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEec
Confidence               3589999999964321    122345567999999999999888653   236666643

>PRK07109 short chain dehydrogenase; Provisional

Probab=99.51  E-value=3.3e-13  Score=108.93  Aligned_cols=122  Identities=10%  Similarity=0.024  Sum_probs=87.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+........+.. ..++.++.+|+.|.+.            .
T Consensus         6 l~~k~vlITGas~gIG~~la~~la~~-G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g   84 (334)
T PRK07109          6 IGRQVVVITGASAGVGRATARAFARR-GAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG   84 (334)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence            36789999999999999999999999 88999999865443333322221 3467889999998642            3


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHH----HHHcCC-eEEEEecceecC
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGL----AKRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~----~~~~~~-~~i~vSS~~~~~  152 (190)
                      ++|++|||||......    ..+..+..+++|+.+..++.+.    +++.+. ++|++||...+.
T Consensus        85 ~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~  149 (334)
T PRK07109         85 PIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYR  149 (334)
T ss_pred             CCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhcc
Confidence            5999999999654321    1223455788988877765544    445443 899999987664

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=99.50  E-value=4.3e-13  Score=104.34  Aligned_cols=119  Identities=15%  Similarity=0.088  Sum_probs=83.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhh-hhhc-CCceEEEecccccccc------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR-KWIG-HPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~-~~~~-~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+|+||+++++.|+++ |+.|++..|+......... .+.. ..++.++.+|+.+.+.            
T Consensus         5 ~~~k~~lItGa~~gIG~~ia~~l~~~-G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~   83 (261)
T PRK08936          5 LEGKVVVITGGSTGLGRAMAVRFGKE-KAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEF   83 (261)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            47899999999999999999999999 7888887775432222221 2211 2467788999998642            


Q ss_pred             CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHH----HHHHcC--CeEEEEecce
Q 029656           96 IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLG----LAKRVG--ARILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~----~~~~~~--~~~i~vSS~~  149 (190)
                      .++|++||+||.......    .+..+..+++|+.++..+++    .+.+.+  .++|++||..
T Consensus        84 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~  147 (261)
T PRK08936         84 GTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVH  147 (261)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccc
Confidence            258999999996544222    12345678999888876554    445444  3899999853

>PRK08703 short chain dehydrogenase; Provisional

Probab=99.50  E-value=3.9e-13  Score=103.20  Aligned_cols=119  Identities=19%  Similarity=0.169  Sum_probs=83.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEeccccccc-------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL-------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~-------------   94 (190)
                      +.+++++||||+|+||+++++.|+++ |+.|++++|+..........+..  ...+.++.+|+.+..             
T Consensus         4 l~~k~vlItG~sggiG~~la~~l~~~-g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~   82 (239)
T PRK08703          4 LSDKTILVTGASQGLGEQVAKAYAAA-GATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAE   82 (239)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHc-CCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHH
Confidence            46789999999999999999999998 88999999976544333332221  234567778886521             


Q ss_pred             -c-CCcCEEEEccCCCCC--ccc---ccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecce
Q 029656           95 -L-IEVDQIYHLACPASP--IFY---KYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSE  149 (190)
Q Consensus        95 -~-~~~d~vi~~ag~~~~--~~~---~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~  149 (190)
                       . .++|+|||+||....  ...   .+...+.+++|+.++.++++++.+    .+ .++|++||..
T Consensus        83 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~  149 (239)
T PRK08703         83 ATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESH  149 (239)
T ss_pred             HhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccc
Confidence             1 358999999996432  111   223445789999999888877743    33 3899998843

>PRK06057 short chain dehydrogenase; Provisional

Probab=99.50  E-value=2e-13  Score=105.87  Aligned_cols=118  Identities=21%  Similarity=0.115  Sum_probs=84.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+..........+    ...++++|+.+...            .+
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~   79 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAE-GATVVVGDIDPEAGKAAADEV----GGLFVPTDVTDEDAVNALFDTAAETYGS   79 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHc----CCcEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999 899999988644322222221    22578899998642            35


Q ss_pred             cCEEEEccCCCCCcc------cccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecce-ecC
Q 029656           98 VDQIYHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSE-VYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~-~~~  152 (190)
                      +|+|||+||...+..      ..+..+..+++|+.++.++++.+.    +.+ .++|++||.. +++
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g  146 (255)
T PRK06057         80 VDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMG  146 (255)
T ss_pred             CCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccC
Confidence            899999998653211      112355678999999988777653    333 3899998854 444

>PRK06483 dihydromonapterin reductase; Provisional

Probab=99.50  E-value=3e-13  Score=103.64  Aligned_cols=113  Identities=19%  Similarity=0.114  Sum_probs=82.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCcC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD   99 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~d   99 (190)
                      +++++||||+|+||+++++.|+++ |++|+++.|+.......+..    .++.++.+|+.+.+.            .++|
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   76 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQ-GQPVIVSYRTHYPAIDGLRQ----AGAQCIQADFSTNAGIMAFIDELKQHTDGLR   76 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHC-CCeEEEEeCCchhHHHHHHH----cCCEEEEcCCCCHHHHHHHHHHHHhhCCCcc
Confidence            478999999999999999999999 89999999876543333222    236788999998632            3599


Q ss_pred             EEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC---CeEEEEecce
Q 029656          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG---ARILLTSTSE  149 (190)
Q Consensus       100 ~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~---~~~i~vSS~~  149 (190)
                      ++|||||......    ..+..+..+++|+.++..+.+.+..    .+   .++|++||..
T Consensus        77 ~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~  137 (236)
T PRK06483         77 AIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYV  137 (236)
T ss_pred             EEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchh
Confidence            9999998643321    1234556789999999877666643    22   3799998854

>PRK06949 short chain dehydrogenase; Provisional

Probab=99.50  E-value=2.7e-13  Score=105.04  Aligned_cols=121  Identities=15%  Similarity=0.097  Sum_probs=87.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.|+.+........+. ...++.++.+|+.+.+.            .
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~-G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQA-GAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAG   85 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            46799999999999999999999999 8899999887554333222221 12467889999987632            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc-------------CCeEEEEecceec
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-------------GARILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~-------------~~~~i~vSS~~~~  151 (190)
                      ++|+|||++|......    ..+.++..+++|+.++.++++.+...             +.++|++||...+
T Consensus        86 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~  157 (258)
T PRK06949         86 TIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGL  157 (258)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECccccc
Confidence            5899999999644321    12345567899999999888876421             1389999987654

>PRK07062 short chain dehydrogenase; Provisional

Probab=99.50  E-value=4.8e-13  Score=104.22  Aligned_cols=121  Identities=17%  Similarity=0.087  Sum_probs=87.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc---CCceEEEecccccccc-----------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+........+..   ..++..+.+|+.|...           
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEA-GASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR   84 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            47899999999999999999999999 88999999976544333222221   2367788999998632           


Q ss_pred             -CCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceec
Q 029656           96 -IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~  151 (190)
                       .++|+||||||.......    .+.+...+++|+.+...+++.+    ++.+ .++|++||...+
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  150 (265)
T PRK07062         85 FGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLAL  150 (265)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEecccccc
Confidence             358999999996543211    2234556888988887776655    3333 389999997644

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.50  E-value=1.7e-13  Score=105.48  Aligned_cols=115  Identities=19%  Similarity=0.202  Sum_probs=81.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc----------------
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL----------------   95 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~----------------   95 (190)
                      ||+++||||+|+||+++++.|+++ |++|+++.|+.....  ..  ....++.++.+|+.+.+.                
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~-G~~v~~~~r~~~~~~--~~--~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~   75 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQP-GIAVLGVARSRHPSL--AA--AAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDG   75 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhC-CCEEEEEecCcchhh--hh--ccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccC
Confidence            468999999999999999999998 889999888644211  11  112367888999998531                


Q ss_pred             CCcCEEEEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecceec
Q 029656           96 IEVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVY  151 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~~  151 (190)
                      ..+|++|||||...+.  .   ..+.+...+++|+.++..+.+.+.    +.+ .++|++||...+
T Consensus        76 ~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~  141 (243)
T PRK07023         76 ASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAAR  141 (243)
T ss_pred             CCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhc
Confidence            1478999999865431  1   122345678999999777666554    333 389999996644

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.50  E-value=2.6e-13  Score=104.41  Aligned_cols=114  Identities=17%  Similarity=0.121  Sum_probs=83.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc---------CCcCEEE
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL---------IEVDQIY  102 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---------~~~d~vi  102 (190)
                      +++++||||+|+||+++++.|+++ |++|+++.|+.+.... +..  ...++.++++|+.+.+.         ..+|++|
T Consensus         1 ~~~vlItGas~giG~~la~~L~~~-G~~V~~~~r~~~~~~~-~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i   76 (240)
T PRK06101          1 MTAVLITGATSGIGKQLALDYAKQ-GWQVIACGRNQSVLDE-LHT--QSANIFTLAFDVTDHPGTKAALSQLPFIPELWI   76 (240)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHH-HHH--hcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEE
Confidence            368999999999999999999999 8999999986433221 111  12357888999998642         2378999


Q ss_pred             EccCCCCC-cc---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029656          103 HLACPASP-IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus       103 ~~ag~~~~-~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      |+||.... ..   ..+..++.+++|+.++.++++.+...   +.++|++||..
T Consensus        77 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~  130 (240)
T PRK06101         77 FNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIA  130 (240)
T ss_pred             EcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechh
Confidence            99985432 11   11224467999999999999988753   34799998854

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=99.50  E-value=5.6e-13  Score=102.95  Aligned_cols=112  Identities=21%  Similarity=0.160  Sum_probs=85.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++|||++|+||+.+++.|+++ |++|+++.|+.      ...  ....+.++++|+.+...            .+
T Consensus         6 ~~~k~vlItGas~~iG~~la~~l~~~-G~~v~~~~~~~------~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (252)
T PRK08220          6 FSGKTVWVTGAAQGIGYAVALAFVEA-GAKVIGFDQAF------LTQ--EDYPFATFVLDVSDAAAVAQVCQRLLAETGP   76 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEecch------hhh--cCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            46789999999999999999999999 89999998865      111  13467889999998632            24


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEeccee
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~  150 (190)
                      +|+||||+|......    ..+.....+++|+.++.++++.+..    .+ .++|++||...
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~  138 (252)
T PRK08220         77 LDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAA  138 (252)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchh
Confidence            899999999754322    2234556799999999999888743    33 38999998653

>PRK05693 short chain dehydrogenase; Provisional

Probab=99.50  E-value=3.4e-13  Score=105.69  Aligned_cols=113  Identities=15%  Similarity=0.052  Sum_probs=83.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCcC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVD   99 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~d   99 (190)
                      ||+++||||+|+||+++++.|+++ |++|++++|+....    ..+. ..++.++.+|+.+.+.            .++|
T Consensus         1 mk~vlItGasggiG~~la~~l~~~-G~~V~~~~r~~~~~----~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   74 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAA-GYEVWATARKAEDV----EALA-AAGFTAVQLDVNDGAALARLAEELEAEHGGLD   74 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHC-CCEEEEEeCCHHHH----HHHH-HCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            478999999999999999999998 89999998864322    2221 1246788899998532            3689


Q ss_pred             EEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEeccee
Q 029656          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEV  150 (190)
Q Consensus       100 ~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~  150 (190)
                      +|||+||......    ..+..+..+++|+.++.++++.+..    ...++|++||...
T Consensus        75 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~  133 (274)
T PRK05693         75 VLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSG  133 (274)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccc
Confidence            9999999654321    1233456789999999988887743    2247999998653

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=99.50  E-value=7.5e-13  Score=101.69  Aligned_cols=119  Identities=21%  Similarity=0.092  Sum_probs=84.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh-h-cCCceEEEecccccccc------------CCc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW-I-GHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~-~-~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      ++++|||++|+||+++++.|+++ |+.|+++.|+........... . ...++.++.+|+.+...            .++
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~-g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i   81 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLND-GYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPV   81 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            68999999999999999999999 799999988743111111111 1 12368899999998642            259


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029656           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      |+|||++|......    ..+..+..+++|+.++.++.+.+    ++.+. ++|++||...+.
T Consensus        82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~  144 (245)
T PRK12824         82 DILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLK  144 (245)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhcc
Confidence            99999998654321    22345567899999998885544    44444 899999976553

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=99.50  E-value=5.8e-13  Score=102.68  Aligned_cols=118  Identities=18%  Similarity=0.090  Sum_probs=80.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC-CCChhhhhhhh-cCCceEEEecccccccc------------CC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~-~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++++||||+|+||+.+++.|+++ |++|.++.++. +........+. ...++.++.+|+.+...            .+
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAAR-GWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGR   80 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999999 77877664432 22222222221 12468899999997632            35


Q ss_pred             cCEEEEccCCCCCcc-----cccCchhHHHHHHHHHHHHHHHHHHc--------CCeEEEEeccee
Q 029656           98 VDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV--------GARILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~--------~~~~i~vSS~~~  150 (190)
                      +|+|||+||......     ..+.....+++|+.++..+++.+.+.        +.++|++||...
T Consensus        81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~  146 (248)
T PRK06947         81 LDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIAS  146 (248)
T ss_pred             CCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhh
Confidence            999999999654311     11233456899999998887544321        126999998653

>PRK07791 short chain dehydrogenase; Provisional

Probab=99.50  E-value=5.5e-13  Score=105.36  Aligned_cols=120  Identities=18%  Similarity=0.122  Sum_probs=85.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC---------CCChhhhhhhhc-CCceEEEeccccccc-----
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF---------TGSKDNLRKWIG-HPRFELIRHDVTEPL-----   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~---------~~~~~~~~~~~~-~~~~~~~~~D~~~~~-----   94 (190)
                      +++++++||||++.||+++++.|+++ |+.|++++|+.         +.......++.. ..++.++.+|+.|.+     
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~-G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~   82 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAE-GARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANL   82 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHH
Confidence            46799999999999999999999999 88888887754         211222222221 236778889999853     


Q ss_pred             -------cCCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----c---C----CeEEEEeccee
Q 029656           95 -------LIEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----V---G----ARILLTSTSEV  150 (190)
Q Consensus        95 -------~~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~---~----~~~i~vSS~~~  150 (190)
                             +.++|++|||||......    ..+.++..+++|+.++..+.+++..    .   +    .++|++||...
T Consensus        83 ~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~  160 (286)
T PRK07791         83 VDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAG  160 (286)
T ss_pred             HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhh
Confidence                   236999999999754321    1234566799999999888876632    1   1    37999998654

>TIGR02415 23BDH acetoin reductases

Probab=99.50  E-value=2.9e-13  Score=104.65  Aligned_cols=117  Identities=22%  Similarity=0.159  Sum_probs=84.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CCcC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~~d   99 (190)
                      ++++|||++|+||+++++.|+++ |++|+++.|+..........+.. ...+.++.+|+.|+..            ..+|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id   79 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKD-GFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD   79 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            57999999999999999999998 88999998864433333333222 3467889999998642            2589


Q ss_pred             EEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC--CeEEEEeccee
Q 029656          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEV  150 (190)
Q Consensus       100 ~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~i~vSS~~~  150 (190)
                      +|||+||......    ..+..+..+++|+.++..+++.+.    +.+  .++|++||...
T Consensus        80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~  140 (254)
T TIGR02415        80 VMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAG  140 (254)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhh
Confidence            9999998654321    123345679999999987776664    333  38999998654

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.49  E-value=5.5e-13  Score=102.84  Aligned_cols=122  Identities=15%  Similarity=0.084  Sum_probs=85.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++|||++|+||+.+++.|+++ |+.|++++|+..........+.. ..++.++++|+.+...            .
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~-G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQK-GAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFG   81 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            36789999999999999999999999 78899998865443333332221 3467889999988532            2


Q ss_pred             CcCEEEEccCCCCCcc-------------cccCchhHHHHHHHHHHHHHHHHH----Hc-C-CeEEEEecceecC
Q 029656           97 EVDQIYHLACPASPIF-------------YKYNPVKTIKTNVIGTLNMLGLAK----RV-G-ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~-------------~~~~~~~~~~~n~~~~~~l~~~~~----~~-~-~~~i~vSS~~~~~  152 (190)
                      .+|+|||+||......             ..+.....+++|+.++..+.+.+.    +. . .++|++||...|+
T Consensus        82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~  156 (253)
T PRK08217         82 QLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAG  156 (253)
T ss_pred             CCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccC
Confidence            4899999998543211             112344578899999987766543    22 2 3689999876654

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=99.49  E-value=4.8e-13  Score=103.01  Aligned_cols=118  Identities=20%  Similarity=0.137  Sum_probs=82.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC-CCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~-~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      ++++++|||++|+||+++++.|+++ |+.|++..++ .......+..+.. ...+..+.+|+.|.+.            .
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~-G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKD-GFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVG   80 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHc-CCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            5789999999999999999999999 7877775432 2222222222221 2357778899998632            3


Q ss_pred             CcCEEEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecce
Q 029656           97 EVDQIYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~  149 (190)
                      ++|+||||||.....    ...+.++..+++|+.++.++++.+    .+.+. ++|++||..
T Consensus        81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~  142 (246)
T PRK12938         81 EIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVN  142 (246)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechh
Confidence            589999999965421    122345567899999988776655    34454 899999864

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=99.49  E-value=4.6e-13  Score=104.13  Aligned_cols=118  Identities=14%  Similarity=0.126  Sum_probs=81.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCCcCE
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEVDQ  100 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~d~  100 (190)
                      |+++||||+|.||+++++.|+++ |++|+++.|+.+........+.....+.++++|+.|.+            +.++|+
T Consensus         1 m~vlItGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~   79 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKK-GARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDA   79 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            57999999999999999999999 88999998875543333333332346788999999863            236999


Q ss_pred             EEEccCCCCCc---ccc---cCchhHHHHHHHHHHHHHHHH----H-HcC-CeEEEEecceec
Q 029656          101 IYHLACPASPI---FYK---YNPVKTIKTNVIGTLNMLGLA----K-RVG-ARILLTSTSEVY  151 (190)
Q Consensus       101 vi~~ag~~~~~---~~~---~~~~~~~~~n~~~~~~l~~~~----~-~~~-~~~i~vSS~~~~  151 (190)
                      ||||||.....   ..+   +.....+.+|+.++..+.+.+    . +.+ .++|++||...+
T Consensus        80 li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~  142 (259)
T PRK08340         80 LVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVK  142 (259)
T ss_pred             EEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccC
Confidence            99999964311   111   123345677877766554432    2 223 389999997653

>PRK05855 short chain dehydrogenase; Validated

Probab=99.49  E-value=6.3e-13  Score=113.97  Aligned_cols=122  Identities=16%  Similarity=0.080  Sum_probs=89.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+.+........+.. ...+.++.+|++|.+.            .
T Consensus       313 ~~~~~~lv~G~s~giG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g  391 (582)
T PRK05855        313 FSGKLVVVTGAGSGIGRETALAFARE-GAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHG  391 (582)
T ss_pred             CCCCEEEEECCcCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            35689999999999999999999999 88999999865443332222211 2367889999998642            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC--CeEEEEecceecC
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~i~vSS~~~~~  152 (190)
                      ++|+||||||......    ..+.....+++|+.++.++++++.    +.+  .++|++||...|.
T Consensus       392 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~  457 (582)
T PRK05855        392 VPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYA  457 (582)
T ss_pred             CCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc
Confidence            5899999999754321    123345678899999998887653    333  4899999987765

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.49  E-value=3.4e-13  Score=104.58  Aligned_cols=117  Identities=19%  Similarity=0.125  Sum_probs=85.1

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------
Q 029656           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++||||+  +.||+++++.|++. |++|++.+|+. .....+.++. ...+.++++|+++.+.            
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~-G~~Vi~~~r~~-~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   81 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQ-GATVIYTYQND-RMKKSLQKLV-DEEDLLVECDVASDESIERAFATIKERV   81 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHC-CCEEEEecCch-HHHHHHHhhc-cCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence            467999999999  79999999999999 89999998863 2222233332 2367889999998632            


Q ss_pred             CCcCEEEEccCCCCC-----cc---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029656           96 IEVDQIYHLACPASP-----IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~-----~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      .++|++|||||...+     ..   ..+..+..+++|+.++..+.+.+...   +.++|++||..
T Consensus        82 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~  146 (252)
T PRK06079         82 GKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFG  146 (252)
T ss_pred             CCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccC
Confidence            359999999996532     11   12234557899999998888777543   24899999854

>PRK06139 short chain dehydrogenase; Provisional

Probab=99.49  E-value=5e-13  Score=107.67  Aligned_cols=120  Identities=13%  Similarity=0.122  Sum_probs=88.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc------------CC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~   97 (190)
                      .+++++||||+|+||+++++.|+++ |++|+++.|+.+...+....+.. ...+.++.+|+.|.+.            .+
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~-G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARR-GARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR   84 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            5789999999999999999999999 88999999875544333333221 3467788899998632            35


Q ss_pred             cCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecceec
Q 029656           98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~~~  151 (190)
                      +|++|||||........    +..+..+++|+.++.++.+.+    .+.+ .++|++||...+
T Consensus        85 iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~  147 (330)
T PRK06139         85 IDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGF  147 (330)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhc
Confidence            89999999965543222    234457999999998887765    3344 389999986644

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.48  E-value=8.8e-13  Score=100.89  Aligned_cols=113  Identities=16%  Similarity=0.106  Sum_probs=85.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc------ccCCcCEEEE
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP------LLIEVDQIYH  103 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~------~~~~~d~vi~  103 (190)
                      +++++++|||++|+||+++++.|+++ |++|+++.|+.....        ..++.++.+|+.++      ...++|+|||
T Consensus         3 l~~k~~lVtGas~~iG~~ia~~l~~~-G~~v~~~~r~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~id~lv~   73 (235)
T PRK06550          3 FMTKTVLITGAASGIGLAQARAFLAQ-GAQVYGVDKQDKPDL--------SGNFHFLQLDLSDDLEPLFDWVPSVDILCN   73 (235)
T ss_pred             CCCCEEEEcCCCchHHHHHHHHHHHC-CCEEEEEeCCccccc--------CCcEEEEECChHHHHHHHHHhhCCCCEEEE
Confidence            46789999999999999999999999 889999988643321        23578889999875      1246999999


Q ss_pred             ccCCCCC-----cccccCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecceec
Q 029656          104 LACPASP-----IFYKYNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSEVY  151 (190)
Q Consensus       104 ~ag~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~~~  151 (190)
                      +||....     ....+..+..+++|+.++.++++++..    .+ .++|++||...+
T Consensus        74 ~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~  131 (235)
T PRK06550         74 TAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASF  131 (235)
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhc
Confidence            9985421     112234556799999999999887753    33 389999997654

>PRK07041 short chain dehydrogenase; Provisional

Probab=99.48  E-value=4.4e-13  Score=102.26  Aligned_cols=116  Identities=15%  Similarity=0.088  Sum_probs=85.8

Q ss_pred             EEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------CCcCEEEEccCC
Q 029656           36 LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQIYHLACP  107 (190)
Q Consensus        36 lItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d~vi~~ag~  107 (190)
                      +||||+|+||+++++.|+++ |+.|+++.|+.+........+....+++++.+|+.+...        .++|++||++|.
T Consensus         1 lItGas~~iG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~   79 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAE-GARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAAD   79 (230)
T ss_pred             CeecCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence            59999999999999999999 899999998654333222222223468889999998742        358999999986


Q ss_pred             CCCcc----cccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecC
Q 029656          108 ASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG  152 (190)
Q Consensus       108 ~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~  152 (190)
                      .....    ..+.....+++|+.++.++.++....+. ++|++||...+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~  129 (230)
T PRK07041         80 TPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVR  129 (230)
T ss_pred             CCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcC
Confidence            54321    1234566799999999999996655444 899999977664

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=99.48  E-value=6.6e-13  Score=102.12  Aligned_cols=119  Identities=17%  Similarity=0.097  Sum_probs=81.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhhc-CCceEEEecccccccc------------CC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~   97 (190)
                      |++++||||+|+||+++++.|+++ |+.|+++ .|+..........+.. ...+..+.+|+.|.+.            .+
T Consensus         1 ~~~~lItGa~g~iG~~l~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~   79 (247)
T PRK09730          1 MAIALVTGGSRGIGRATALLLAQE-GYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEP   79 (247)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            368999999999999999999999 7888764 4543322222222221 2357889999998642            35


Q ss_pred             cCEEEEccCCCCCcc-----cccCchhHHHHHHHHHHHHHHHHHHc--------CCeEEEEecceec
Q 029656           98 VDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAKRV--------GARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~--------~~~~i~vSS~~~~  151 (190)
                      +|+|||++|......     ..+.....+++|+.++.++++.+...        +.++|++||...+
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~  146 (247)
T PRK09730         80 LAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASR  146 (247)
T ss_pred             CCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhc
Confidence            899999999653211     11224467899999998877665332        2369999997643

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.48  E-value=9.4e-13  Score=102.47  Aligned_cols=119  Identities=15%  Similarity=0.113  Sum_probs=81.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhhc--CCceEEEeccccccc------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG--HPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~~--~~~~~~~~~D~~~~~------------   94 (190)
                      +++++++||||+++||+++++.|++. |++|+++.|+.... ......+..  ..++.++.+|++|.+            
T Consensus         6 l~~k~vlItGas~gIG~~ia~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (260)
T PRK08416          6 MKGKTLVISGGTRGIGKAIVYEFAQS-GVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED   84 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            47899999999999999999999999 88888876543222 221222211  246789999999863            


Q ss_pred             cCCcCEEEEccCCCCC-------ccc---ccCchhHHHHHHHHHHHHHHHHH----HcCC-eEEEEecce
Q 029656           95 LIEVDQIYHLACPASP-------IFY---KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSE  149 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~-------~~~---~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~~i~vSS~~  149 (190)
                      +.++|++|||||....       ...   .+.....+++|+.+...+.+.+.    +.+. ++|++||..
T Consensus        85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~  154 (260)
T PRK08416         85 FDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTG  154 (260)
T ss_pred             cCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccc
Confidence            2358999999985421       111   12234568888888776665553    3333 899999954

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.48  E-value=1.5e-12  Score=100.96  Aligned_cols=119  Identities=14%  Similarity=0.117  Sum_probs=94.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ..|+.|+||||++.||+.++.+++++ +..+.+.+.+.....+.........++..+.||+++.+.            ..
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~  114 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGD  114 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            47899999999999999999999999 888888888887777666666544579999999998642            35


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHH----Hc-CCeEEEEecce
Q 029656           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RV-GARILLTSTSE  149 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~-~~~~i~vSS~~  149 (190)
                      +|++|||||++....-    ++.-+..+++|+.+...+.++..    +. +.++|.++|..
T Consensus       115 V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~a  175 (300)
T KOG1201|consen  115 VDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVA  175 (300)
T ss_pred             ceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhh
Confidence            9999999998775322    22334579999999998877763    32 34899999865

>PRK06940 short chain dehydrogenase; Provisional

Probab=99.47  E-value=1.6e-12  Score=102.19  Aligned_cols=114  Identities=17%  Similarity=0.161  Sum_probs=83.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc-----------CCcC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-----------IEVD   99 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~-----------~~~d   99 (190)
                      ++.++|||+ |+||+++++.|. + |++|++++|+.+........+.. ..++.++++|+.|.+.           .++|
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~-G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-A-GKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-C-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            478899997 799999999995 6 89999999865433332222221 2367889999998632           3599


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceec
Q 029656          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVY  151 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~  151 (190)
                      +||||||....   ...+...+++|+.++.++++.+...   +.++|++||....
T Consensus        79 ~li~nAG~~~~---~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~  130 (275)
T PRK06940         79 GLVHTAGVSPS---QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGH  130 (275)
T ss_pred             EEEECCCcCCc---hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccc
Confidence            99999996532   3457788999999999999888543   2367777876543

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.47  E-value=1.4e-12  Score=101.47  Aligned_cols=118  Identities=18%  Similarity=0.053  Sum_probs=83.7

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------
Q 029656           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------   94 (190)
                      +++++++||||+  +.||+++++.|+++ |++|.+.+|+.+.. ..+..+.. .....++++|+.+.+            
T Consensus         8 ~~~k~~lItGas~g~GIG~a~a~~la~~-G~~v~l~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   85 (258)
T PRK07533          8 LAGKRGLVVGIANEQSIAWGCARAFRAL-GAELAVTYLNDKAR-PYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEE   85 (258)
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHc-CCEEEEEeCChhhH-HHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHH
Confidence            467999999998  59999999999999 88998888864321 12222211 123467889999863            


Q ss_pred             cCCcCEEEEccCCCCCc--------ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029656           95 LIEVDQIYHLACPASPI--------FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      +.++|++|||||.....        ...+.++..+++|+.++.++.+.+...   +.++|++||..
T Consensus        86 ~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~  151 (258)
T PRK07533         86 WGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYG  151 (258)
T ss_pred             cCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence            23599999999864321        112345668999999999998877432   24799999854

>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]

Probab=99.46  E-value=1.8e-13  Score=105.26  Aligned_cols=115  Identities=19%  Similarity=0.208  Sum_probs=99.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccC-----CcCEEEEc
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-----EVDQIYHL  104 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-----~~d~vi~~  104 (190)
                      ..|-.+.|+|||||+|+.+++.|.+. |.+|++..|.++...-+++-..+...+-+...|+.|++..     ..++|||.
T Consensus        59 ~sGiVaTVFGAtGFlGryvvnklak~-GSQviiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~sNVVINL  137 (391)
T KOG2865|consen   59 VSGIVATVFGATGFLGRYVVNKLAKM-GSQVIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHSNVVINL  137 (391)
T ss_pred             ccceEEEEecccccccHHHHHHHhhc-CCeEEEeccCCccchhheeecccccceeeeccCCCCHHHHHHHHHhCcEEEEe
Confidence            36778999999999999999999999 8999999999888887777666778899999999998754     48999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecce
Q 029656          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE  149 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~  149 (190)
                      .|--    .+.....+.++|..++.+|++.|++.|+ |+|++|+..
T Consensus       138 IGrd----~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lg  179 (391)
T KOG2865|consen  138 IGRD----YETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLG  179 (391)
T ss_pred             eccc----cccCCcccccccchHHHHHHHHHHhhChhheeehhhcc
Confidence            9732    2344556779999999999999999998 999999866

>PRK06484 short chain dehydrogenase; Validated

Probab=99.46  E-value=7.3e-13  Score=112.65  Aligned_cols=119  Identities=18%  Similarity=0.210  Sum_probs=88.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ..+++++||||+|+||+++++.|+++ |++|++++|+..........+  ..++..+.+|+.|++.            ..
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~  343 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAA-GDRLLIIDRDAEGAKKLAEAL--GDEHLSVQADITDEAAVESAFAQIQARWGR  343 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--CCceeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            37899999999999999999999999 889999988654333222222  2356778999998642            35


Q ss_pred             cCEEEEccCCCCC--cc---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecceec
Q 029656           98 VDQIYHLACPASP--IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~--~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~  151 (190)
                      +|+||||||....  ..   ..+.++..+++|+.++.++++.+...   +.++|++||...+
T Consensus       344 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  405 (520)
T PRK06484        344 LDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASL  405 (520)
T ss_pred             CCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhc
Confidence            9999999996532  11   12345567999999999998887653   2489999997644

>PRK07831 short chain dehydrogenase; Provisional

Probab=99.46  E-value=2.7e-12  Score=99.95  Aligned_cols=121  Identities=21%  Similarity=0.183  Sum_probs=86.1

Q ss_pred             cccCCCEEEEEcccc-hHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEeccccccc---------
Q 029656           28 FFQSNMRILVTGGAG-FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPL---------   94 (190)
Q Consensus        28 ~~~~~~~vlItG~~G-~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~---------   94 (190)
                      .++.+++++||||+| .||+++++.|+++ |+.|++++|+..........+.   ...++.++++|+.+..         
T Consensus        13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~-G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~   91 (262)
T PRK07831         13 GLLAGKVVLVTAAAGTGIGSATARRALEE-GARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAA   91 (262)
T ss_pred             cccCCCEEEEECCCcccHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence            345789999999997 7999999999999 8889998886544333333221   2246888999999863         


Q ss_pred             ---cCCcCEEEEccCCCCCccc----ccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecce
Q 029656           95 ---LIEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSE  149 (190)
Q Consensus        95 ---~~~~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~  149 (190)
                         +.++|+||||||.......    .+.....+++|+.++..+++.+..    .+  .++|++||..
T Consensus        92 ~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~  159 (262)
T PRK07831         92 VERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVL  159 (262)
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchh
Confidence               1358999999996443211    123445688999999888777643    32  3788888854

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.46  E-value=8e-13  Score=115.31  Aligned_cols=122  Identities=16%  Similarity=0.069  Sum_probs=89.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------C
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.+++++||||+|+||+++++.|+++ |++|+++.|+.+........+. ...++.++.+|+.|.+.            .
T Consensus       369 ~~~k~vlItGas~giG~~la~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g  447 (657)
T PRK07201        369 LVGKVVLITGASSGIGRATAIKVAEA-GATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHG  447 (657)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            46789999999999999999999999 8899999987554333332222 13468889999998642            2


Q ss_pred             CcCEEEEccCCCCCccc------ccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecceecC
Q 029656           97 EVDQIYHLACPASPIFY------KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~~------~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~~~~  152 (190)
                      ++|+||||||.......      .+.....+++|+.++.++++.+    ++.+. ++|++||...+.
T Consensus       448 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~  514 (657)
T PRK07201        448 HVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQT  514 (657)
T ss_pred             CCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcC
Confidence            59999999996432111      1235567999999998887665    33444 899999987665

>PRK08017 oxidoreductase; Provisional

Probab=99.45  E-value=1.6e-12  Score=100.55  Aligned_cols=111  Identities=20%  Similarity=0.129  Sum_probs=80.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------------CCcC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------------IEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------------~~~d   99 (190)
                      ++++|||++|+||+++++.|+++ |++|+++.|+.+....    +. ..+++.+.+|+.+...             ..+|
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~~~~~~~----~~-~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~   76 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRR-GYRVLAACRKPDDVAR----MN-SLGFTGILLDLDDPESVERAADEVIALTDNRLY   76 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHhHH----HH-hCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCe
Confidence            68999999999999999999999 7899999886543221    11 1246788899987531             3478


Q ss_pred             EEEEccCCCCCcc----cccCchhHHHHHHHHHHHH----HHHHHHcCC-eEEEEecce
Q 029656          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNM----LGLAKRVGA-RILLTSTSE  149 (190)
Q Consensus       100 ~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l----~~~~~~~~~-~~i~vSS~~  149 (190)
                      .+||++|......    ..+..+..+++|+.++.++    ++.+++.+. ++|++||..
T Consensus        77 ~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~  135 (256)
T PRK08017         77 GLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVM  135 (256)
T ss_pred             EEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcc
Confidence            9999998644221    1223446789999988776    455555664 899999864

>PRK07069 short chain dehydrogenase; Validated

Probab=99.45  E-value=1.3e-12  Score=100.74  Aligned_cols=119  Identities=18%  Similarity=0.121  Sum_probs=81.9

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhh-hhhc---CCceEEEecccccccc------------CC
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR-KWIG---HPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~-~~~~---~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++||||+|+||+++++.|+++ |++|++++|+.......+. .+..   ...+..+.+|+.+.+.            .+
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   79 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQ-GAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGG   79 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            3899999999999999999999 8999999886322222221 2211   1234567889998642            35


Q ss_pred             cCEEEEccCCCCCccc----ccCchhHHHHHHH----HHHHHHHHHHHcCC-eEEEEecceecCC
Q 029656           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVI----GTLNMLGLAKRVGA-RILLTSTSEVYGD  153 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----~~~~~~~~~~n~~----~~~~l~~~~~~~~~-~~i~vSS~~~~~~  153 (190)
                      +|+|||+||.......    .+.....+++|+.    .+..+++.+++.+. ++|++||...+..
T Consensus        80 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~  144 (251)
T PRK07069         80 LSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKA  144 (251)
T ss_pred             ccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccC
Confidence            8999999986553211    1223456788888    55666677766654 8999999776553

>PRK06198 short chain dehydrogenase; Provisional

Probab=99.45  E-value=8.5e-13  Score=102.45  Aligned_cols=122  Identities=12%  Similarity=0.079  Sum_probs=87.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCe-EEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNE-VIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~-v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------   95 (190)
                      +++++++|||++|+||+.+++.|+++ |+. |+++.|+.+........+. ....+.++.+|+.++..            
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~-G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAER-GAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF   82 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            47799999999999999999999999 666 9999886543332222221 12357788899998642            


Q ss_pred             CCcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecceecC
Q 029656           96 IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVYG  152 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~~~~  152 (190)
                      .++|+|||++|......    ..+..+..+++|+.++.++++.+.+    .+  .++|++||...++
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~  149 (260)
T PRK06198         83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHG  149 (260)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCccccc
Confidence            25899999998654221    1223345689999999999877743    22  3799999977665

>PRK05865 hypothetical protein; Provisional

Probab=99.45  E-value=6.6e-13  Score=117.34  Aligned_cols=98  Identities=29%  Similarity=0.420  Sum_probs=80.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~  107 (190)
                      |+|+||||+||||+++++.|+++ |++|++++|+....   .     ...+.++.+|+.|..     +.++|+|||+|+.
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~-G~~Vv~l~R~~~~~---~-----~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~   71 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQ-GHEVVGIARHRPDS---W-----PSSADFIAADIRDATAVESAMTGADVVAHCAWV   71 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-cCEEEEEECCchhh---c-----ccCceEEEeeCCCHHHHHHHHhCCCEEEECCCc
Confidence            57999999999999999999999 89999998863221   1     125788899999863     3469999999975


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecc
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS  148 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~  148 (190)
                      ..+         .+++|+.++.+++++|++.++ ++|++||.
T Consensus        72 ~~~---------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~  104 (854)
T PRK05865         72 RGR---------NDHINIDGTANVLKAMAETGTGRIVFTSSG  104 (854)
T ss_pred             ccc---------hHHHHHHHHHHHHHHHHHcCCCeEEEECCc
Confidence            321         468999999999999999887 89999995

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.44  E-value=1.3e-12  Score=102.48  Aligned_cols=118  Identities=14%  Similarity=0.070  Sum_probs=83.6

Q ss_pred             cCCCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEecccccccc-----------
Q 029656           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||++  .||+++++.|+++ |++|++.+|+... ...+..+.. ......+++|+.|.+.           
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~-Ga~V~~~~r~~~~-~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~   82 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQ-GAELAFTYQGEAL-GKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKK   82 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhC-CCEEEEecCchHH-HHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            4679999999997  9999999999999 8999998876422 222222211 1223568899998642           


Q ss_pred             -CCcCEEEEccCCCCC-----cc---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029656           96 -IEVDQIYHLACPASP-----IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~-----~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                       .++|++|||||....     ..   ..+.++..+++|+.++.++.+++...   +.++|++||..
T Consensus        83 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~  148 (271)
T PRK06505         83 WGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGG  148 (271)
T ss_pred             hCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCC
Confidence             369999999996532     11   12345567899999999888776432   24899999864

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.44  E-value=1.5e-12  Score=99.12  Aligned_cols=112  Identities=19%  Similarity=0.212  Sum_probs=81.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc----------CCcCEE
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL----------IEVDQI  101 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~----------~~~d~v  101 (190)
                      +++++|||++|+||+++++.|+++ |++|++++|+...... +..   ..++.++.+|+.|.+.          .++|+|
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~~-G~~V~~~~r~~~~~~~-~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~v   75 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLER-GWQVTATVRGPQQDTA-LQA---LPGVHIEKLDMNDPASLDQLLQRLQGQRFDLL   75 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHhC-CCEEEEEeCCCcchHH-HHh---ccccceEEcCCCCHHHHHHHHHHhhcCCCCEE
Confidence            378999999999999999999999 8999999997655332 222   2356778899988632          259999


Q ss_pred             EEccCCCCCcc------cccCchhHHHHHHHHHHHHHHHHHHc---C-CeEEEEecc
Q 029656          102 YHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKRV---G-ARILLTSTS  148 (190)
Q Consensus       102 i~~ag~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~---~-~~~i~vSS~  148 (190)
                      ||+||...+..      ..+.....+.+|+.++..+++.+...   + .+++++||.
T Consensus        76 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~  132 (225)
T PRK08177         76 FVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQ  132 (225)
T ss_pred             EEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccC
Confidence            99998754311      11234456788999999888877543   2 368888774

>PRK08324 short chain dehydrogenase; Validated

Probab=99.44  E-value=1.4e-12  Score=114.23  Aligned_cols=121  Identities=21%  Similarity=0.132  Sum_probs=89.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++||||+|+||+++++.|+++ |.+|++++|+..........+.....+.++.+|+++...            .+
T Consensus       420 l~gk~vLVTGasggIG~~la~~L~~~-Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~  498 (681)
T PRK08324        420 LAGKVALVTGAAGGIGKATAKRLAAE-GACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGG  498 (681)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHC-cCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            36799999999999999999999999 789999998765433333323222468889999998642            26


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH----HcC--CeEEEEecceec
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~i~vSS~~~~  151 (190)
                      +|+||||||......    ..+.+...+++|+.++..+++.+.    +.+  .++|++||...+
T Consensus       499 iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~  562 (681)
T PRK08324        499 VDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAV  562 (681)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCcccc
Confidence            999999999654322    122345678999999999977664    333  489999997644

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=99.43  E-value=2.4e-12  Score=112.60  Aligned_cols=120  Identities=20%  Similarity=0.212  Sum_probs=85.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc-----------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~-----------   95 (190)
                      +.+++++||||+|+||+++++.|+++ |++|++++|+..........+.   ....+..+++|+++...           
T Consensus       412 l~gkvvLVTGasggIG~aiA~~La~~-Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~  490 (676)
T TIGR02632       412 LARRVAFVTGGAGGIGRETARRLAAE-GAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALA  490 (676)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            36799999999999999999999999 8999999886544332222222   22357788999998642           


Q ss_pred             -CCcCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHH----HHcC--CeEEEEeccee
Q 029656           96 -IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVG--ARILLTSTSEV  150 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~--~~~i~vSS~~~  150 (190)
                       .++|+||||||........    +.....+++|+.+...+.+.+    ++.+  .++|++||...
T Consensus       491 ~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a  556 (676)
T TIGR02632       491 YGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNA  556 (676)
T ss_pred             cCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhh
Confidence             2699999999965432211    224456888988887766444    3333  48999999653

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.43  E-value=1.8e-12  Score=98.51  Aligned_cols=112  Identities=19%  Similarity=0.203  Sum_probs=82.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc----------CCcCEE
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL----------IEVDQI  101 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~----------~~~d~v  101 (190)
                      |++++|||++|+||+++++.|+++ |++|+++.|+.+...    .+.. ..+.++.+|+.+...          .++|+|
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~~-G~~v~~~~r~~~~~~----~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~v   74 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRAD-GWRVIATARDAAALA----ALQA-LGAEALALDVADPASVAGLAWKLDGEALDAA   74 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHhC-CCEEEEEECCHHHHH----HHHh-ccceEEEecCCCHHHHHHHHHHhcCCCCCEE
Confidence            478999999999999999999998 889999988644322    2211 245688999998632          248999


Q ss_pred             EEccCCCCCcc------cccCchhHHHHHHHHHHHHHHHHHHc----CCeEEEEecce
Q 029656          102 YHLACPASPIF------YKYNPVKTIKTNVIGTLNMLGLAKRV----GARILLTSTSE  149 (190)
Q Consensus       102 i~~ag~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~~~~i~vSS~~  149 (190)
                      ||++|......      ..+..+..+++|+.++.++++++.+.    +.+++++||..
T Consensus        75 i~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~  132 (222)
T PRK06953         75 VYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRM  132 (222)
T ss_pred             EECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcc
Confidence            99998753211      22345668999999999999888642    23788998864

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.43  E-value=3.3e-12  Score=100.24  Aligned_cols=118  Identities=17%  Similarity=0.068  Sum_probs=84.0

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEEeccccccc------------
Q 029656           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~------------   94 (190)
                      +.+++++||||+  +.||+++++.|+++ |++|+++.|+.. ..+.+..+... .....+++|+.+.+            
T Consensus         8 ~~~k~~lItGas~~~GIG~aia~~la~~-G~~V~l~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   85 (272)
T PRK08159          8 MAGKRGLILGVANNRSIAWGIAKACRAA-GAELAFTYQGDA-LKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK   85 (272)
T ss_pred             ccCCEEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEcCchH-HHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh
Confidence            467999999997  89999999999999 889988877522 22223322211 23556889999863            


Q ss_pred             cCCcCEEEEccCCCCC-----c---ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029656           95 LIEVDQIYHLACPASP-----I---FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~-----~---~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      +.++|++|||||....     .   ...+.++..+++|+.++..+++.+...   +.++|++||..
T Consensus        86 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~  151 (272)
T PRK08159         86 WGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYG  151 (272)
T ss_pred             cCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            2359999999996532     1   112345567999999999998887543   24899999854

>PRK06125 short chain dehydrogenase; Provisional

Probab=99.43  E-value=2.1e-12  Score=100.31  Aligned_cols=119  Identities=15%  Similarity=0.096  Sum_probs=86.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEeccccccc--------cCCcC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL--------LIEVD   99 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~--------~~~~d   99 (190)
                      +++++++|||++|.||+++++.|+++ |++|++++|+.+........+..  ..++.++.+|+.+++        ..++|
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~-G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   83 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAE-GCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDID   83 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence            36799999999999999999999998 88999999875543332222221  236788899999864        24699


Q ss_pred             EEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecce
Q 029656          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSE  149 (190)
Q Consensus       100 ~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~  149 (190)
                      ++|||+|......    ..+.....+++|+.+...+++.+    .+.+ .++|++||..
T Consensus        84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~  142 (259)
T PRK06125         84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAA  142 (259)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence            9999998653221    12234567899999998888776    3333 3799998853

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=99.43  E-value=3.4e-12  Score=97.82  Aligned_cols=116  Identities=21%  Similarity=0.129  Sum_probs=80.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC-Chhhhhhhh-cCCceEEEecccccccc------------CCc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWI-GHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~-~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      ++++|||++|+||+++++.|+++ |+.|+++.|+... ......... ...++.++.+|+.++..            ..+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKD-GYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPI   79 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            57999999999999999999999 8888888773221 111111111 12468899999998642            358


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHH----HHcCC-eEEEEecce
Q 029656           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~~i~vSS~~  149 (190)
                      |+|||+||......    ..+.++..+++|+.++..+++.+    ++.+. ++|++||..
T Consensus        80 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~  139 (242)
T TIGR01829        80 DVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVN  139 (242)
T ss_pred             cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchh
Confidence            99999998654321    12234566889999987765544    45554 899999854

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.43  E-value=1.8e-12  Score=99.12  Aligned_cols=117  Identities=21%  Similarity=0.161  Sum_probs=84.1

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhhhhhc-CCceEEEecccccccc------------CCcCE
Q 029656           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIG-HPRFELIRHDVTEPLL------------IEVDQ  100 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~~-~~~~~~~~~D~~~~~~------------~~~d~  100 (190)
                      ++|||++|+||+++++.|+++ |++|+++.|+..... .....+.. ...+.++.+|+.|...            ..+|+
T Consensus         1 vlItG~~g~iG~~la~~l~~~-G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   79 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKE-GAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDI   79 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            589999999999999999999 889999988652221 22222211 2357889999998642            24899


Q ss_pred             EEEccCCCCCc----ccccCchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecce-ecC
Q 029656          101 IYHLACPASPI----FYKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSE-VYG  152 (190)
Q Consensus       101 vi~~ag~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~-~~~  152 (190)
                      |||++|.....    ...+.++..+++|+.++.++++.+..    .+. ++|++||.. .++
T Consensus        80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g  141 (239)
T TIGR01830        80 LVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMG  141 (239)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCC
Confidence            99999975432    12234567889999999999988864    233 899999965 444

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.43  E-value=2.7e-12  Score=98.29  Aligned_cols=118  Identities=12%  Similarity=0.052  Sum_probs=84.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCCc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~   98 (190)
                      .+++++|||++|+||+++++.|+++ |++|+++.|+.+..+.....+.....+.++.+|+.+..            ..++
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   82 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKE-GAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI   82 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            5689999999999999999999999 88999999975433322222222346788999999863            2347


Q ss_pred             CEEEEccCCCCCc--ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029656           99 DQIYHLACPASPI--FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~--~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      |.+||++|.....  ...+..+..++.|+.+...+++.+.+.   +.++|++||..
T Consensus        83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~  138 (238)
T PRK05786         83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMS  138 (238)
T ss_pred             CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecch
Confidence            9999999854321  111234456889999988887776543   34799999854

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.43  E-value=4e-12  Score=98.85  Aligned_cols=116  Identities=18%  Similarity=0.150  Sum_probs=81.3

Q ss_pred             cCCCEEEEEcc--cchHHHHHHHHHHhcCCCeEEEEcCCCC-CChhhhhhhhcCCceEEEeccccccc------------
Q 029656           30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~--~G~iG~~l~~~L~~~~~~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~------------   94 (190)
                      +.+++++|||+  ++.||+++++.|+++ |+.|++.+|+.. ...+.+.... ...+.++++|+.|.+            
T Consensus         5 ~~~k~~lItGa~~s~GIG~a~a~~la~~-G~~v~l~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~   82 (256)
T PRK07889          5 LEGKRILVTGVITDSSIAFHVARVAQEQ-GAEVVLTGFGRALRLTERIAKRL-PEPAPVLELDVTNEEHLASLADRVREH   82 (256)
T ss_pred             ccCCEEEEeCCCCcchHHHHHHHHHHHC-CCEEEEecCccchhHHHHHHHhc-CCCCcEEeCCCCCHHHHHHHHHHHHHH
Confidence            36789999999  899999999999999 889999887532 1112222111 125678899999864            


Q ss_pred             cCCcCEEEEccCCCCC-----cccc---cCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEec
Q 029656           95 LIEVDQIYHLACPASP-----IFYK---YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTST  147 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~-----~~~~---~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS  147 (190)
                      +.++|++|||||....     ...+   +.....+++|+.++.++.+.+...   +.++|++|+
T Consensus        83 ~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~  146 (256)
T PRK07889         83 VDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDF  146 (256)
T ss_pred             cCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEee
Confidence            2359999999997532     1112   223446899999999888777532   237888875

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.42  E-value=3.2e-12  Score=100.46  Aligned_cols=117  Identities=18%  Similarity=0.097  Sum_probs=83.3

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEeccccccc-----------
Q 029656           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPL-----------   94 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~-----------   94 (190)
                      +.+|+++||||+  +.||+++++.|+++ |+.|++.+|+.+ ..+.+..+..  ... ..+++|+.|.+           
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la~~-G~~Vil~~r~~~-~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~   79 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACFEQ-GAELAFTYLNEA-LKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKK   79 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHHHC-CCEEEEEecCHH-HHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHH
Confidence            467999999997  79999999999999 889998888642 1222222211  112 57889999864           


Q ss_pred             -cCCcCEEEEccCCCCC-----c---ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029656           95 -LIEVDQIYHLACPASP-----I---FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        95 -~~~~d~vi~~ag~~~~-----~---~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                       +.++|++|||||....     .   ...+..+..+++|+.++..+.+.+...   +.++|++||..
T Consensus        80 ~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~  146 (274)
T PRK08415         80 DLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLG  146 (274)
T ss_pred             HcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCC
Confidence             2359999999996431     1   112335567999999999988877542   24899999854

>PRK05884 short chain dehydrogenase; Provisional

Probab=99.42  E-value=4.5e-12  Score=96.67  Aligned_cols=112  Identities=16%  Similarity=0.228  Sum_probs=81.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc---------CCcCEEEE
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL---------IEVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---------~~~d~vi~  103 (190)
                      |+++||||+|+||+++++.|+++ |++|+++.|+.+.......    ..++.++++|+.+...         .++|++||
T Consensus         1 m~vlItGas~giG~~ia~~l~~~-g~~v~~~~r~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~   75 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRND-GHKVTLVGARRDDLEVAAK----ELDVDAIVCDNTDPASLEEARGLFPHHLDTIVN   75 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----hccCcEEecCCCCHHHHHHHHHHHhhcCcEEEE
Confidence            47999999999999999999998 8899999886433222111    2246788899998642         25899999


Q ss_pred             ccCCCCC----c---c--cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029656          104 LACPASP----I---F--YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus       104 ~ag~~~~----~---~--~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      |||....    .   .  ..+.....+++|+.++.++++++...   +.++|++||..
T Consensus        76 ~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~  133 (223)
T PRK05884         76 VPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN  133 (223)
T ss_pred             CCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC
Confidence            9984211    0   1  12345567999999999999887542   24899999843

>PRK06924 short chain dehydrogenase; Provisional

Probab=99.42  E-value=1.5e-12  Score=100.59  Aligned_cols=117  Identities=15%  Similarity=0.191  Sum_probs=78.9

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccC--------------C
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI--------------E   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--------------~   97 (190)
                      |++++||||+|+||+++++.|+++ |++|+++.|+..+....+... ...++.++.+|+.+....              +
T Consensus         1 ~k~vlItGasggiG~~ia~~l~~~-g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK06924          1 MRYVIITGTSQGLGEAIANQLLEK-GTHVISISRTENKELTKLAEQ-YNSNLTFHSLDLQDVHELETNFNEILSSIQEDN   78 (251)
T ss_pred             CcEEEEecCCchHHHHHHHHHHhc-CCEEEEEeCCchHHHHHHHhc-cCCceEEEEecCCCHHHHHHHHHHHHHhcCccc
Confidence            378999999999999999999999 889999988652221111111 124688899999986321              1


Q ss_pred             c--CEEEEccCCCCCcc-----cccCchhHHHHHHHHHHHHHHHH----HHcC--CeEEEEeccee
Q 029656           98 V--DQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLA----KRVG--ARILLTSTSEV  150 (190)
Q Consensus        98 ~--d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~--~~~i~vSS~~~  150 (190)
                      .  .++||+||...+..     ..+.....+++|+.++..+++.+    ++.+  .++|++||...
T Consensus        79 ~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~  144 (251)
T PRK06924         79 VSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAA  144 (251)
T ss_pred             CCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhh
Confidence            1  27899998654311     12334456888988877666555    3322  37999999653

>PLN00015 protochlorophyllide reductase

Probab=99.42  E-value=1.7e-12  Score=103.54  Aligned_cols=115  Identities=15%  Similarity=0.135  Sum_probs=82.7

Q ss_pred             EEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhh-cCCceEEEecccccccc------------CCcCEE
Q 029656           36 LVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWI-GHPRFELIRHDVTEPLL------------IEVDQI  101 (190)
Q Consensus        36 lItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~------------~~~d~v  101 (190)
                      +||||++.||.++++.|+++ | +.|++..|+.+........+. ....+.++.+|+.+.+.            .++|+|
T Consensus         1 lITGas~GIG~aia~~l~~~-G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l   79 (308)
T PLN00015          1 IITGASSGLGLATAKALAET-GKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVL   79 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEE
Confidence            59999999999999999999 7 899998886543333332221 12367888999998642            358999


Q ss_pred             EEccCCCCCc--c---cccCchhHHHHHHHHHHHHHHHH----HHcC---CeEEEEecceec
Q 029656          102 YHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLA----KRVG---ARILLTSTSEVY  151 (190)
Q Consensus       102 i~~ag~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~----~~~~---~~~i~vSS~~~~  151 (190)
                      |||||...+.  .   ..+..+..+++|+.++..+++.+    .+.+   .+||++||...+
T Consensus        80 InnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~  141 (308)
T PLN00015         80 VCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGN  141 (308)
T ss_pred             EECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccc
Confidence            9999975321  1   22345568999999988886655    3333   489999997654

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.42  E-value=2.4e-12  Score=100.39  Aligned_cols=119  Identities=16%  Similarity=0.051  Sum_probs=81.4

Q ss_pred             cCCCEEEEEcc--cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEEecccccccc-----------
Q 029656           30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        30 ~~~~~vlItG~--~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~-----------   95 (190)
                      +++++++||||  ++.||+++++.|+++ |.+|++.+|.. ...+...++... .....+++|+.|.+.           
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~-G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQ-GAELAFTYVVD-KLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKH   81 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHC-CCEEEEEcCcH-HHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHH
Confidence            46789999996  679999999999999 88998887753 222333333211 234578899998642           


Q ss_pred             -CCcCEEEEccCCCCCc-----c-c---ccCchhHHHHHHHHHHHHHHHHHH----cCCeEEEEeccee
Q 029656           96 -IEVDQIYHLACPASPI-----F-Y---KYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEV  150 (190)
Q Consensus        96 -~~~d~vi~~ag~~~~~-----~-~---~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~i~vSS~~~  150 (190)
                       .++|++|||||.....     . .   .+.....+++|+.++..+.+.+..    .+.++|++||...
T Consensus        82 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~  150 (261)
T PRK08690         82 WDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGA  150 (261)
T ss_pred             hCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEccccc
Confidence             3599999999975421     0 1   112334578899888887776532    2247999998553

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=99.42  E-value=1e-12  Score=96.64  Aligned_cols=120  Identities=21%  Similarity=0.217  Sum_probs=90.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ++|.+|+||||+..||..+++.+.+. |.+|++..|+.+...+...   ..+.+....||+.|...            ..
T Consensus         3 ~tgnTiLITGG~sGIGl~lak~f~el-gN~VIi~gR~e~~L~e~~~---~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~   78 (245)
T COG3967           3 TTGNTILITGGASGIGLALAKRFLEL-GNTVIICGRNEERLAEAKA---ENPEIHTEVCDVADRDSRRELVEWLKKEYPN   78 (245)
T ss_pred             ccCcEEEEeCCcchhhHHHHHHHHHh-CCEEEEecCcHHHHHHHHh---cCcchheeeecccchhhHHHHHHHHHhhCCc
Confidence            46889999999999999999999999 8999999997665554433   25688889999998752            35


Q ss_pred             cCEEEEccCCCCCccc---cc---CchhHHHHHHHHHHHHHHHHH----HcC-CeEEEEecceecCC
Q 029656           98 VDQIYHLACPASPIFY---KY---NPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVYGD  153 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~---~~---~~~~~~~~n~~~~~~l~~~~~----~~~-~~~i~vSS~~~~~~  153 (190)
                      .+++|||||.......   ++   ..++-+.+|+.++..+..+.-    +.+ .-+|.|||.-.|-+
T Consensus        79 lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvP  145 (245)
T COG3967          79 LNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVP  145 (245)
T ss_pred             hheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCc
Confidence            9999999997764221   11   123457889999887766553    333 37999999665543

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.42  E-value=5.9e-12  Score=98.36  Aligned_cols=118  Identities=18%  Similarity=0.084  Sum_probs=82.7

Q ss_pred             cCCCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------
Q 029656           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------   94 (190)
                      +++++++||||++  .||+++++.|+++ |+.|++.+|+. ...+....+.. ......+.+|+.|.+            
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~-G~~vil~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   81 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHRE-GAELAFTYQND-KLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKV   81 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHC-CCEEEEEecch-hHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhh
Confidence            4679999999985  9999999999999 88898888762 22233333322 234567889999863            


Q ss_pred             cCCcCEEEEccCCCCCcc---------cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029656           95 LIEVDQIYHLACPASPIF---------YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~~~---------~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      +.++|++|||||......         ..+.++..+++|+.++..+.+.+...   +.++|++||..
T Consensus        82 ~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~  148 (262)
T PRK07984         82 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLG  148 (262)
T ss_pred             cCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence            235999999999643211         11234456899999988888776432   23799999854

>PRK07832 short chain dehydrogenase; Provisional

Probab=99.42  E-value=4.4e-12  Score=99.30  Aligned_cols=117  Identities=16%  Similarity=0.133  Sum_probs=82.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccccc------------CCc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      |+++||||+|+||+++++.|+++ |+.|++++|+.+........+..  ...+.++.+|+.+.+.            .++
T Consensus         1 k~vlItGas~giG~~la~~la~~-G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQ-GAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSM   79 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            47999999999999999999998 78899988865433322222221  2234567899988532            358


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----c--CCeEEEEeccee
Q 029656           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----V--GARILLTSTSEV  150 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~--~~~~i~vSS~~~  150 (190)
                      |+|||++|......    ..+..+..+++|+.++.++++++..    .  +.++|++||...
T Consensus        80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~  141 (272)
T PRK07832         80 DVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAG  141 (272)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccc
Confidence            99999998653221    1233456799999999999988642    2  248999999653

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.41  E-value=9.7e-12  Score=96.79  Aligned_cols=118  Identities=14%  Similarity=0.075  Sum_probs=83.5

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhh---hcCCceEEEeccccccc----------
Q 029656           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPL----------   94 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~----------   94 (190)
                      +.+++++||||+  +.||+++++.|+++ |++|++..|+... .+.+..+   ....++.++++|+.|++          
T Consensus         5 ~~~k~~lItGa~~s~GIG~aia~~la~~-G~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~   82 (257)
T PRK08594          5 LEGKTYVVMGVANKRSIAWGIARSLHNA-GAKLVFTYAGERL-EKEVRELADTLEGQESLLLPCDVTSDEEITACFETIK   82 (257)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHC-CCEEEEecCcccc-hHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHH
Confidence            467999999997  89999999999999 8899888775322 2222222   12346788999999864          


Q ss_pred             --cCCcCEEEEccCCCCC-----cc---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029656           95 --LIEVDQIYHLACPASP-----IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        95 --~~~~d~vi~~ag~~~~-----~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                        +.++|++|||||....     ..   ..+.+...+++|+.++..+.+.+...   +.++|++||..
T Consensus        83 ~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~  150 (257)
T PRK08594         83 EEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLG  150 (257)
T ss_pred             HhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccC
Confidence              2359999999986431     11   11223456789999988887776542   24899999854

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.41  E-value=5.3e-12  Score=98.37  Aligned_cols=118  Identities=15%  Similarity=0.058  Sum_probs=82.5

Q ss_pred             cCCCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEEeccccccc------------
Q 029656           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~------------   94 (190)
                      +++++++||||++  .||+++++.|+++ |+.|++.+|+. ...+.+..+... ....++++|+.|++            
T Consensus         6 ~~~k~~lITGas~~~GIG~a~a~~la~~-G~~v~~~~r~~-~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (260)
T PRK06603          6 LQGKKGLITGIANNMSISWAIAQLAKKH-GAELWFTYQSE-VLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEK   83 (260)
T ss_pred             cCCcEEEEECCCCCcchHHHHHHHHHHc-CCEEEEEeCch-HHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHH
Confidence            3678999999997  8999999999999 88898887753 222223333221 22345789999863            


Q ss_pred             cCCcCEEEEccCCCCC-----cc---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029656           95 LIEVDQIYHLACPASP-----IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~-----~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      +.++|++|||||....     ..   ..+.+...+++|+.++..+++.+...   +.++|++||..
T Consensus        84 ~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~  149 (260)
T PRK06603         84 WGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYG  149 (260)
T ss_pred             cCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCc
Confidence            2359999999986431     11   12335567999999999988876432   24899999855

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=99.41  E-value=5.2e-12  Score=96.84  Aligned_cols=115  Identities=17%  Similarity=0.114  Sum_probs=81.8

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhhc-CCceEEEecccccccc------------CCcCE
Q 029656           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG-HPRFELIRHDVTEPLL------------IEVDQ  100 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~~d~  100 (190)
                      ++||||+|+||.++++.|+++ |++|.++.|+.... ......+.. ..++.++.+|+.+...            ..+|+
T Consensus         1 vlItGas~giG~~~a~~l~~~-G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~   79 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAAD-GFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYG   79 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            589999999999999999999 88888887653322 222222221 2468899999998642            25899


Q ss_pred             EEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHH-----HcC-CeEEEEeccee
Q 029656          101 IYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK-----RVG-ARILLTSTSEV  150 (190)
Q Consensus       101 vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~-----~~~-~~~i~vSS~~~  150 (190)
                      +||++|......    ..+.+...+++|+.++.++++.+.     +.+ .++|++||...
T Consensus        80 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~  139 (239)
T TIGR01831        80 VVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSG  139 (239)
T ss_pred             EEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhh
Confidence            999998654321    233456689999999999988652     233 38999999653

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK06484 short chain dehydrogenase; Validated

Probab=99.40  E-value=3e-12  Score=108.95  Aligned_cols=118  Identities=20%  Similarity=0.244  Sum_probs=87.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      .+++++|||++++||+++++.|+++ |++|+++.|+.+........+  ...+.++.+|+.+++.            .++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARA-GDQVVVADRNVERARERADSL--GPDHHALAMDVSDEAQIREGFEQLHREFGRI   80 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh--CCceeEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence            6789999999999999999999999 899999988655443333322  2356788999998642            359


Q ss_pred             CEEEEccCCCCC------cccccCchhHHHHHHHHHHHHHHHHHHc----C--CeEEEEecceec
Q 029656           99 DQIYHLACPASP------IFYKYNPVKTIKTNVIGTLNMLGLAKRV----G--ARILLTSTSEVY  151 (190)
Q Consensus        99 d~vi~~ag~~~~------~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~i~vSS~~~~  151 (190)
                      |+||||||...+      ....+..+..+++|+.++..+++++...    +  .++|++||....
T Consensus        81 D~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~  145 (520)
T PRK06484         81 DVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGL  145 (520)
T ss_pred             CEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccC
Confidence            999999986322      1122345668999999999988877532    2  389999996643

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=99.40  E-value=6.2e-12  Score=98.23  Aligned_cols=103  Identities=15%  Similarity=0.082  Sum_probs=71.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC-CChhhhhhhhc--CCceEEEecccccccc--------------
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT-GSKDNLRKWIG--HPRFELIRHDVTEPLL--------------   95 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~-~~~~~~~~~~~--~~~~~~~~~D~~~~~~--------------   95 (190)
                      ..++||||+|+||+++++.|+++ |++|+++.|+.. ........+..  ...+..+.+|++|.+.              
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~-G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~   80 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQE-GYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFR   80 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhC-CCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence            46899999999999999999999 888888765432 22222222211  2356678899998641              


Q ss_pred             --CCcCEEEEccCCCCCccc-cc--------------CchhHHHHHHHHHHHHHHHHH
Q 029656           96 --IEVDQIYHLACPASPIFY-KY--------------NPVKTIKTNVIGTLNMLGLAK  136 (190)
Q Consensus        96 --~~~d~vi~~ag~~~~~~~-~~--------------~~~~~~~~n~~~~~~l~~~~~  136 (190)
                        .++|+||||||...+... +.              .....+++|+.++..+.+.+.
T Consensus        81 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~  138 (267)
T TIGR02685        81 AFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFA  138 (267)
T ss_pred             ccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence              359999999996543211 11              133568999999999988764

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.40  E-value=6.5e-12  Score=103.41  Aligned_cols=104  Identities=14%  Similarity=0.123  Sum_probs=76.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEc
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHL  104 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~  104 (190)
                      +++++++||||+|+||+++++.|+++ |++|+++.|+.+........  ....+..+.+|+.|.+     +.++|++|||
T Consensus       176 l~gK~VLITGASgGIG~aLA~~La~~-G~~Vi~l~r~~~~l~~~~~~--~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInn  252 (406)
T PRK07424        176 LKGKTVAVTGASGTLGQALLKELHQQ-GAKVVALTSNSDKITLEING--EDLPVKTLHWQVGQEAALAELLEKVDILIIN  252 (406)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHhh--cCCCeEEEEeeCCCHHHHHHHhCCCCEEEEC
Confidence            36799999999999999999999999 88999988865432221111  1124667889999864     3579999999


Q ss_pred             cCCCCC-cccccCchhHHHHHHHHHHHHHHHHH
Q 029656          105 ACPASP-IFYKYNPVKTIKTNVIGTLNMLGLAK  136 (190)
Q Consensus       105 ag~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~  136 (190)
                      ||.... ..+.+..++.+++|+.++.++++++.
T Consensus       253 AGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~l  285 (406)
T PRK07424        253 HGINVHGERTPEAINKSYEVNTFSAWRLMELFF  285 (406)
T ss_pred             CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            986432 12233456789999999999988874

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=99.39  E-value=6.8e-12  Score=97.66  Aligned_cols=119  Identities=16%  Similarity=0.095  Sum_probs=83.9

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCC--ChhhhhhhhcC-CceEEEecccccccc---------
Q 029656           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTG--SKDNLRKWIGH-PRFELIRHDVTEPLL---------   95 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~--~~~~~~~~~~~-~~~~~~~~D~~~~~~---------   95 (190)
                      +.+++++||||+  +.||+++++.|+++ |++|++..|+.+.  ..+.+..+... ..+.++++|+.|++.         
T Consensus         4 l~~k~~lItGas~~~GIG~aia~~la~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~   82 (258)
T PRK07370          4 LTGKKALVTGIANNRSIAWGIAQQLHAA-GAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIK   82 (258)
T ss_pred             cCCcEEEEeCCCCCCchHHHHHHHHHHC-CCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHH
Confidence            367899999986  89999999999999 8888887664332  22223333211 246678899998642         


Q ss_pred             ---CCcCEEEEccCCCCC-----cc---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029656           96 ---IEVDQIYHLACPASP-----IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        96 ---~~~d~vi~~ag~~~~-----~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                         .++|++|||||....     ..   ..+.++..+++|+.++..+.+.+...   +.++|++||..
T Consensus        83 ~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~  150 (258)
T PRK07370         83 QKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLG  150 (258)
T ss_pred             HHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccc
Confidence               359999999996531     11   12334567899999999888876432   24899999854

>PRK08303 short chain dehydrogenase; Provisional

Probab=99.38  E-value=1.5e-11  Score=98.11  Aligned_cols=119  Identities=11%  Similarity=0.011  Sum_probs=82.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC----------hhhhhhhhc-CCceEEEeccccccc----
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----------KDNLRKWIG-HPRFELIRHDVTEPL----   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~----------~~~~~~~~~-~~~~~~~~~D~~~~~----   94 (190)
                      +.+++++||||++.||+++++.|++. |+.|++++|+....          ......+.. ..++.++++|+.+++    
T Consensus         6 l~~k~~lITGgs~GIG~aia~~la~~-G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~   84 (305)
T PRK08303          6 LRGKVALVAGATRGAGRGIAVELGAA-GATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA   84 (305)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHC-CCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence            46799999999999999999999999 88999998874211          111111111 235778899999863    


Q ss_pred             --------cCCcCEEEEcc-CCCC-----Ccccc---cCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEecce
Q 029656           95 --------LIEVDQIYHLA-CPAS-----PIFYK---YNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTSTSE  149 (190)
Q Consensus        95 --------~~~~d~vi~~a-g~~~-----~~~~~---~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS~~  149 (190)
                              +.++|++|||| |...     ....+   +...+.+++|+.+...+.+++..    .+ .+||++||..
T Consensus        85 ~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~  161 (305)
T PRK08303         85 LVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGT  161 (305)
T ss_pred             HHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcc
Confidence                    23599999999 7421     11111   22445688999998888776643    33 4899999854

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.37  E-value=1.2e-11  Score=103.55  Aligned_cols=119  Identities=19%  Similarity=0.139  Sum_probs=86.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +.+++++|||++|+||..+++.|+++ |.+|+++++...  .+.+..+....+...+.+|+.+...            .+
T Consensus       208 ~~g~~vlItGasggIG~~la~~l~~~-Ga~vi~~~~~~~--~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~  284 (450)
T PRK08261        208 LAGKVALVTGAARGIGAAIAEVLARD-GAHVVCLDVPAA--GEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGG  284 (450)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEEeCCcc--HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCC
Confidence            47899999999999999999999999 889998877422  2222222222234678899998632            25


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHcC-----CeEEEEecceec
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVG-----ARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~~~i~vSS~~~~  151 (190)
                      +|+|||+||......    ..+..+..+++|+.++.++.+.+....     .++|++||...+
T Consensus       285 id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~  347 (450)
T PRK08261        285 LDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGI  347 (450)
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhc
Confidence            899999999664321    223355678999999999999886532     389999997643

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.36  E-value=1e-11  Score=96.86  Aligned_cols=118  Identities=16%  Similarity=0.030  Sum_probs=82.0

Q ss_pred             cCCCEEEEEcc--cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEEeccccccc------------
Q 029656           30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItG~--~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~------------   94 (190)
                      +.+++++||||  ++.||+++++.|+++ |++|++.+|... ..+.+..+... .....+.+|+.|++            
T Consensus         4 l~~k~vlItGas~~~GIG~a~a~~l~~~-G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   81 (260)
T PRK06997          4 LAGKRILITGLLSNRSIAYGIAKACKRE-GAELAFTYVGDR-FKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQH   81 (260)
T ss_pred             cCCcEEEEeCCCCCCcHHHHHHHHHHHC-CCeEEEEccchH-HHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHH
Confidence            36799999996  689999999999999 889988765422 12223222211 22346789999864            


Q ss_pred             cCCcCEEEEccCCCCCc---------ccccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029656           95 LIEVDQIYHLACPASPI---------FYKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        95 ~~~~d~vi~~ag~~~~~---------~~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      +.++|++|||||.....         ...+.++..+++|+.++..+.+++.+.   +.++|++||..
T Consensus        82 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~  148 (260)
T PRK06997         82 WDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLG  148 (260)
T ss_pred             hCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence            23599999999965321         112234457899999999888877543   23899999855

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.36  E-value=2.4e-11  Score=94.38  Aligned_cols=119  Identities=17%  Similarity=0.113  Sum_probs=80.5

Q ss_pred             cCCCEEEEEcccc--hHHHHHHHHHHhcCCCeEEEEcCCCC--C-----Chh---hh-hhhh-cCCceEEEecccccccc
Q 029656           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFT--G-----SKD---NL-RKWI-GHPRFELIRHDVTEPLL   95 (190)
Q Consensus        30 ~~~~~vlItG~~G--~iG~~l~~~L~~~~~~~v~~~~r~~~--~-----~~~---~~-~~~~-~~~~~~~~~~D~~~~~~   95 (190)
                      +++++++||||+|  .||+++++.|+++ |..|+++.|...  .     ...   .+ ..+. ....+..+++|+.+.+.
T Consensus         4 l~~k~vlVtGas~~~giG~~~a~~l~~~-G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~   82 (256)
T PRK12859          4 LKNKVAVVTGVSRLDGIGAAICKELAEA-GADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDA   82 (256)
T ss_pred             cCCcEEEEECCCCCCChHHHHHHHHHHC-CCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence            4789999999995  8999999999999 788888653210  0     011   11 1111 12467888999998642


Q ss_pred             ------------CCcCEEEEccCCCCCc-c---cccCchhHHHHHHHHHHHHHHHH----HHcC-CeEEEEecce
Q 029656           96 ------------IEVDQIYHLACPASPI-F---YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSE  149 (190)
Q Consensus        96 ------------~~~d~vi~~ag~~~~~-~---~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~~i~vSS~~  149 (190)
                                  ..+|+|||+||..... .   ..+..+..+++|+.++..+.+.+    ++.+ .++|++||..
T Consensus        83 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~  157 (256)
T PRK12859         83 PKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQ  157 (256)
T ss_pred             HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccc
Confidence                        2489999999865322 1   12234557999999988885444    3333 3899999964

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.35  E-value=1.5e-11  Score=89.29  Aligned_cols=118  Identities=16%  Similarity=0.133  Sum_probs=84.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh---hhhh-cCCceEEEecccccccc------------C
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---RKWI-GHPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~---~~~~-~~~~~~~~~~D~~~~~~------------~   96 (190)
                      ++++|+||+|+||.++++.|++++.+.|.++.|+........   ..+. ...++.++.+|+.++..            .
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG   80 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            468999999999999999999983357888877654433211   1221 12467788899987531            2


Q ss_pred             CcCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEeccee
Q 029656           97 EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEV  150 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~  150 (190)
                      .+|+|||++|......    ..+..+..+++|+.++.++++++++.+. ++|++||...
T Consensus        81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~  139 (180)
T smart00822       81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAG  139 (180)
T ss_pred             CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHH
Confidence            4799999998654221    1234556799999999999999977665 7898888653

It uses NADPH to reduce the keto group to a hydroxy group.

>PRK05599 hypothetical protein; Provisional

Probab=99.35  E-value=1.6e-11  Score=94.97  Aligned_cols=116  Identities=14%  Similarity=0.104  Sum_probs=80.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc--CCceEEEecccccccc------------CCc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      |+++||||++.||+++++.|. + |++|+++.|+.+.......++..  ...+.++.+|+.|.+.            .++
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~-g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   78 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-H-GEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEI   78 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence            579999999999999999998 5 78999998876544443333322  2247889999998632            359


Q ss_pred             CEEEEccCCCCCcc-c---ccCchhHHHHHHHHHHHHHHH----HHHcC--CeEEEEeccee
Q 029656           99 DQIYHLACPASPIF-Y---KYNPVKTIKTNVIGTLNMLGL----AKRVG--ARILLTSTSEV  150 (190)
Q Consensus        99 d~vi~~ag~~~~~~-~---~~~~~~~~~~n~~~~~~l~~~----~~~~~--~~~i~vSS~~~  150 (190)
                      |++|||||...... .   .....+.+.+|+.+...+++.    +.+.+  .++|++||...
T Consensus        79 d~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~  140 (246)
T PRK05599         79 SLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAG  140 (246)
T ss_pred             CEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccc
Confidence            99999999754321 1   112334567788877655544    33432  48999999654

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=99.34  E-value=1.6e-11  Score=101.42  Aligned_cols=119  Identities=28%  Similarity=0.334  Sum_probs=90.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcC--CCeEEEEcCCCCCCh--hhhhhh---------hcC-----CceEEEecccc
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSK--DNLRKW---------IGH-----PRFELIRHDVT   91 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~--~~~v~~~~r~~~~~~--~~~~~~---------~~~-----~~~~~~~~D~~   91 (190)
                      ..+++|+|||||||+|+.+++.|+...  -..+.++.|...+..  +.+..+         .+.     .++..+.+|+.
T Consensus        10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~   89 (467)
T KOG1221|consen   10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS   89 (467)
T ss_pred             hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence            488999999999999999999999973  247888877655443  222221         111     57888889998


Q ss_pred             cccc-----------CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEecceec
Q 029656           92 EPLL-----------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVY  151 (190)
Q Consensus        92 ~~~~-----------~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS~~~~  151 (190)
                      ++.+           .++|+|||+|+-+..   .+.......+|+.|+.++++.|++...  -++++||+++.
T Consensus        90 ~~~LGis~~D~~~l~~eV~ivih~AAtvrF---de~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n  159 (467)
T KOG1221|consen   90 EPDLGISESDLRTLADEVNIVIHSAATVRF---DEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSN  159 (467)
T ss_pred             CcccCCChHHHHHHHhcCCEEEEeeeeecc---chhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhhee
Confidence            7643           259999999986542   334455689999999999999999874  69999998876

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=99.34  E-value=4.9e-12  Score=92.41  Aligned_cols=118  Identities=19%  Similarity=0.103  Sum_probs=93.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      +.+.++||||+..||+++++.|.+. |+.|.+.+++....+.....+.....-..+.+|+.++..            ..+
T Consensus        13 ~sk~~~vtGg~sGIGrAia~~la~~-Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~p   91 (256)
T KOG1200|consen   13 MSKVAAVTGGSSGIGRAIAQLLAKK-GARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTP   91 (256)
T ss_pred             hcceeEEecCCchHHHHHHHHHHhc-CcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCC
Confidence            5688999999999999999999999 899999999877666655555544455678899998642            249


Q ss_pred             CEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc-------CCeEEEEecce
Q 029656           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV-------GARILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~-------~~~~i~vSS~~  149 (190)
                      ++++||||++.+..    ..+++.+.+.+|+.+++.+.+++.+.       +.++|.+||.-
T Consensus        92 svlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIV  153 (256)
T KOG1200|consen   92 SVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIV  153 (256)
T ss_pred             cEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhh
Confidence            99999999887532    34567788999999999887776432       34899999943

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.34  E-value=2.1e-11  Score=91.15  Aligned_cols=99  Identities=25%  Similarity=0.325  Sum_probs=74.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc--------CCcCEEEEc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQIYHL  104 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d~vi~~  104 (190)
                      |+++|||++|+||+++++.|+++  .+|+++.|+..                .+++|+.+.+.        .++|+|||+
T Consensus         1 ~~vlItGas~giG~~la~~l~~~--~~vi~~~r~~~----------------~~~~D~~~~~~~~~~~~~~~~id~lv~~   62 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR--HEVITAGRSSG----------------DVQVDITDPASIRALFEKVGKVDAVVSA   62 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc--CcEEEEecCCC----------------ceEecCCChHHHHHHHHhcCCCCEEEEC
Confidence            47999999999999999999987  78888887532                34678877532        369999999


Q ss_pred             cCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029656          105 ACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus       105 ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      ||......    ..+.+.+.+++|+.++.++++.+.+.   +.+++++||..
T Consensus        63 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~  114 (199)
T PRK07578         63 AGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGIL  114 (199)
T ss_pred             CCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccc
Confidence            99654321    12234556899999999999887653   23788888754

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=99.34  E-value=2.9e-11  Score=94.72  Aligned_cols=121  Identities=18%  Similarity=0.138  Sum_probs=89.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc----CCceEEEeccccccc-----------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPL-----------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~-----------   94 (190)
                      +.++.++|||++..||++++..|++. |.+|.+.+|+.+........+..    ..++..+.+|+.+..           
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~-Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~   84 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKA-GAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE   84 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999 99999999987766555444432    245889999999753           


Q ss_pred             --cCCcCEEEEccCCCCCcc-----cccCchhHHHHHHHH-HHHHHHHHH----HcCC-eEEEEecceec
Q 029656           95 --LIEVDQIYHLACPASPIF-----YKYNPVKTIKTNVIG-TLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        95 --~~~~d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~-~~~l~~~~~----~~~~-~~i~vSS~~~~  151 (190)
                        +.++|++|||||......     +++.++.++++|+.+ ...+.+.+.    +.+. .++++||...+
T Consensus        85 ~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~  154 (270)
T KOG0725|consen   85 KFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGV  154 (270)
T ss_pred             HhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccc
Confidence              346999999999665331     234466689999995 555555553    2233 78888886543

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=99.33  E-value=4.9e-11  Score=91.25  Aligned_cols=108  Identities=20%  Similarity=0.213  Sum_probs=76.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc--------cCCcCEEEE
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~d~vi~  103 (190)
                      |+++||||+|+||+++++.|++++ +..+....|.....       ....++.++++|+.+..        ..++|+|||
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~   73 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD-------FQHDNVQWHALDVTDEAEIKQLSEQFTQLDWLIN   73 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc-------cccCceEEEEecCCCHHHHHHHHHhcCCCCEEEE
Confidence            589999999999999999999983 34565555543221       12347889999999864        246999999


Q ss_pred             ccCCCCCcc-------cc---cCchhHHHHHHHHHHHHHHHHHH----cC-CeEEEEec
Q 029656          104 LACPASPIF-------YK---YNPVKTIKTNVIGTLNMLGLAKR----VG-ARILLTST  147 (190)
Q Consensus       104 ~ag~~~~~~-------~~---~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~i~vSS  147 (190)
                      |||......       ..   +.....+.+|+.++..+++.+..    .+ .+++++||
T Consensus        74 ~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss  132 (235)
T PRK09009         74 CVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISA  132 (235)
T ss_pred             CCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEee
Confidence            999764210       01   12335689999999888777643    23 37888887

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=99.33  E-value=4.1e-11  Score=92.51  Aligned_cols=121  Identities=21%  Similarity=0.197  Sum_probs=85.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC-hhhhhhhhc-C--CceEEEeccccc-cc----------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIG-H--PRFELIRHDVTE-PL----------   94 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~~-~--~~~~~~~~D~~~-~~----------   94 (190)
                      +.+++++|||+++.||+.+++.|+++ |+.|++..|+.... .+.+..... .  ..+.+..+|+++ ..          
T Consensus         3 ~~~~~ilITGas~GiG~aia~~l~~~-G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~   81 (251)
T COG1028           3 LSGKVALVTGASSGIGRAIARALARE-GARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAE   81 (251)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHC-CCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHH
Confidence            46799999999999999999999977 88888777765541 222221111 1  357778899997 42          


Q ss_pred             --cCCcCEEEEccCCCCC--cc---cccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEecceec
Q 029656           95 --LIEVDQIYHLACPASP--IF---YKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVY  151 (190)
Q Consensus        95 --~~~~d~vi~~ag~~~~--~~---~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS~~~~  151 (190)
                        +.++|++|||||....  ..   ..+..+..+.+|+.+...+.+.+...-.  ++|++||....
T Consensus        82 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~  147 (251)
T COG1028          82 EEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL  147 (251)
T ss_pred             HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc
Confidence              2349999999997542  11   2234566899999999888875544333  89999996644

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=99.33  E-value=2e-11  Score=94.83  Aligned_cols=118  Identities=12%  Similarity=0.052  Sum_probs=82.0

Q ss_pred             EEEEEcccchHHHHHHHHHHhc---CCCeEEEEcCCCCCChhhhhhhhc---CCceEEEeccccccccC-----------
Q 029656           34 RILVTGGAGFIGSHLVDKLMEN---EKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLLI-----------   96 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~---~~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~-----------   96 (190)
                      .++||||+++||+++++.|++.   .|++|+++.|+.+........+..   ...+.++.+|+.+....           
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~   81 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP   81 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence            5899999999999999999972   378999999876544433333322   34688899999986311           


Q ss_pred             -----CcCEEEEccCCCCCc---cc----ccCchhHHHHHHHHHHHHHHHHHH----c-C--CeEEEEecceec
Q 029656           97 -----EVDQIYHLACPASPI---FY----KYNPVKTIKTNVIGTLNMLGLAKR----V-G--ARILLTSTSEVY  151 (190)
Q Consensus        97 -----~~d~vi~~ag~~~~~---~~----~~~~~~~~~~n~~~~~~l~~~~~~----~-~--~~~i~vSS~~~~  151 (190)
                           +.|+||||||.....   ..    .+..+..+++|+.++..+.+.+.+    . +  .++|++||...+
T Consensus        82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~  155 (256)
T TIGR01500        82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAI  155 (256)
T ss_pred             ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhC
Confidence                 126999999964321   11    123456899999999887766532    2 2  379999996543

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=99.30  E-value=1e-11  Score=92.73  Aligned_cols=115  Identities=26%  Similarity=0.273  Sum_probs=86.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh--hhhhhhhcCCceEEEeccccccc------------c
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK--DNLRKWIGHPRFELIRHDVTEPL------------L   95 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~--~~~~~~~~~~~~~~~~~D~~~~~------------~   95 (190)
                      .+||++++||+.|.||+++.+.|++. +..+.++..+.+..+  .+++.+.+.+++.|+++|+++..            +
T Consensus         3 ~tGKna~vtggagGIGl~~sk~Ll~k-gik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~f   81 (261)
T KOG4169|consen    3 LTGKNALVTGGAGGIGLATSKALLEK-GIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATF   81 (261)
T ss_pred             ccCceEEEecCCchhhHHHHHHHHHc-CchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999 776666665555433  33444556789999999999853            3


Q ss_pred             CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHH----HHHHHHc-C---CeEEEEecce
Q 029656           96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM----LGLAKRV-G---ARILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l----~~~~~~~-~---~~~i~vSS~~  149 (190)
                      ..+|++||.||+..    +.+.+.++.+|+.+..+-    +.+..+. +   .-+|.+||..
T Consensus        82 g~iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~  139 (261)
T KOG4169|consen   82 GTIDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVA  139 (261)
T ss_pred             CceEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEecccc
Confidence            35999999999765    446788899998776554    4444333 2   2588999844

>PRK08862 short chain dehydrogenase; Provisional

Probab=99.29  E-value=4.3e-11  Score=91.60  Aligned_cols=118  Identities=10%  Similarity=0.062  Sum_probs=82.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------cC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~~   96 (190)
                      +++++++|||+++.||+++++.|+++ |++|.++.|+.+...+....+.. ..++..+.+|+.+.+            +.
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~-G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARL-GATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFN   81 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46799999999999999999999999 89999998876544333332221 235777889998863            23


Q ss_pred             -CcCEEEEccCCCCCc--cccc---CchhHHHHHHHHHHHHHHHH----HHcC--CeEEEEecc
Q 029656           97 -EVDQIYHLACPASPI--FYKY---NPVKTIKTNVIGTLNMLGLA----KRVG--ARILLTSTS  148 (190)
Q Consensus        97 -~~d~vi~~ag~~~~~--~~~~---~~~~~~~~n~~~~~~l~~~~----~~~~--~~~i~vSS~  148 (190)
                       ++|++|||||.....  ..+.   ...+.+++|+.++..+.+.+    .+.+  ..+|++||.
T Consensus        82 ~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~  145 (227)
T PRK08862         82 RAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISH  145 (227)
T ss_pred             CCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence             699999999743321  1121   23345677888877665544    3333  389999984

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.28  E-value=4.6e-11  Score=88.34  Aligned_cols=121  Identities=23%  Similarity=0.262  Sum_probs=80.7

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC---hhhhhhhhc-CCceEEEecccccccc------------CC
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS---KDNLRKWIG-HPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~---~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++||||.|.||..+++.|++++..+++++.|+....   ...+..+.. ...+.++++|++|++.            ..
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~   81 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP   81 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence            6899999999999999999999667899999983211   223444432 4588999999998642            35


Q ss_pred             cCEEEEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecce-ecCCC
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE-VYGDP  154 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~-~~~~~  154 (190)
                      ++.|||+||......    ..+.....+...+.++.+|.+++...+. .+|++||.. ++|..
T Consensus        82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~~  144 (181)
T PF08659_consen   82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGGP  144 (181)
T ss_dssp             EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-T
T ss_pred             cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccCc
Confidence            899999999765422    1223445688889999999999988887 788889977 45543

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]

Probab=99.27  E-value=1.6e-11  Score=91.79  Aligned_cols=130  Identities=25%  Similarity=0.259  Sum_probs=96.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-------cCCcCEEEE
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYH  103 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-------~~~~d~vi~  103 (190)
                      +++|+|||++|.+|+++.+.+..++. .+-.++.-                   .-.+|+++.+       ..++..|||
T Consensus         1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~-------------------skd~DLt~~a~t~~lF~~ekPthVIh   61 (315)
T KOG1431|consen    1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIG-------------------SKDADLTNLADTRALFESEKPTHVIH   61 (315)
T ss_pred             CceEEEecCCchHHHHHHHHHHhcCCCCcceEEec-------------------cccccccchHHHHHHHhccCCceeee
Confidence            47899999999999999999999842 12222211                   1124555432       357999999


Q ss_pred             ccCCCCCcc-cccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCCCCCCCCCCCCccCCCCCCcccchhhhhH
Q 029656          104 LACPASPIF-YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGI  181 (190)
Q Consensus       104 ~ag~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~~~y~~~~~  181 (190)
                      .|+-++.-+ .-..+.+.+..|+.--.|++..|.++++ +++++.|+|+|+...+.|++|.......|......|   .+
T Consensus        62 lAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gY---sy  138 (315)
T KOG1431|consen   62 LAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGY---SY  138 (315)
T ss_pred             hHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHH---HH
Confidence            998555322 2345678899999999999999999998 899999999999999999999976555555555567   44


Q ss_pred             HH
Q 029656          182 MK  183 (190)
Q Consensus       182 sK  183 (190)
                      .|
T Consensus       139 AK  140 (315)
T KOG1431|consen  139 AK  140 (315)
T ss_pred             HH
Confidence            46

>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]

Probab=99.25  E-value=4.3e-11  Score=90.62  Aligned_cols=146  Identities=25%  Similarity=0.291  Sum_probs=117.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC-ChhhhhhhhcC------CceEEEecccccccc-------CC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIGH------PRFELIRHDVTEPLL-------IE   97 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~-~~~~~~~~~~~------~~~~~~~~D~~~~~~-------~~   97 (190)
                      .+..||||-+|.=|+.|++.|+.. |++|..+.|+... ....+.++...      .......+|++|...       .+
T Consensus        28 rkvALITGItGQDGSYLaEfLL~K-gYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ik  106 (376)
T KOG1372|consen   28 RKVALITGITGQDGSYLAEFLLSK-GYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIK  106 (376)
T ss_pred             ceEEEEecccCCCchHHHHHHHhC-CceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccC
Confidence            367999999999999999999999 8999988776543 33445555432      356677799999743       46


Q ss_pred             cCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC----CeEEEEecceecCCCCCCCCCCCCccCCCCCCcc
Q 029656           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG----ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMF  173 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----~~~i~vSS~~~~~~~~~~~~~e~~~~~~~~~~~~  173 (190)
                      ++-|.|.|+...+..+.+-++..-++...|+.+|+++.+.++    +|+...||...||.....|-+|.     +|+.|.
T Consensus       107 PtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~-----TPFyPR  181 (376)
T KOG1372|consen  107 PTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSET-----TPFYPR  181 (376)
T ss_pred             chhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccC-----CCCCCC
Confidence            889999999877766666777778889999999999988775    48999999999998888888888     799999


Q ss_pred             cchhhhhHHHHhh
Q 029656          174 SFVLKDGIMKLIG  186 (190)
Q Consensus       174 ~~y~~~~~sK~~~  186 (190)
                      ++|   +.+|..+
T Consensus       182 SPY---a~aKmy~  191 (376)
T KOG1372|consen  182 SPY---AAAKMYG  191 (376)
T ss_pred             Chh---HHhhhhh
Confidence            999   6668653

>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]

Probab=99.23  E-value=2e-10  Score=85.83  Aligned_cols=118  Identities=20%  Similarity=0.179  Sum_probs=82.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC-CCCChhhhhhh-hcCCceEEEeccccccc--------------c
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKW-IGHPRFELIRHDVTEPL--------------L   95 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~-~~~~~~~~~~~-~~~~~~~~~~~D~~~~~--------------~   95 (190)
                      .+.++||||+..||..|++.|++..+-++++..++ ++.....+..+ ....+++.++.|++..+              .
T Consensus         3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg~   82 (249)
T KOG1611|consen    3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVGS   82 (249)
T ss_pred             CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhccc
Confidence            36699999999999999999999866665555444 44433333332 23579999999999764              2


Q ss_pred             CCcCEEEEccCCCCCcccccC-----chhHHHHHHHHHHHHHHHH-------HHc------CC---eEEEEecce
Q 029656           96 IEVDQIYHLACPASPIFYKYN-----PVKTIKTNVIGTLNMLGLA-------KRV------GA---RILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~ag~~~~~~~~~~-----~~~~~~~n~~~~~~l~~~~-------~~~------~~---~~i~vSS~~  149 (190)
                      .++|++|+|||+.........     .-+.+++|..++..+.+.+       +.+      .+   .+|++||.+
T Consensus        83 ~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~  157 (249)
T KOG1611|consen   83 DGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSA  157 (249)
T ss_pred             CCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccc
Confidence            369999999997765433222     3346899998887766654       111      12   588999865

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=99.23  E-value=2.1e-10  Score=91.32  Aligned_cols=118  Identities=11%  Similarity=0.084  Sum_probs=78.4

Q ss_pred             cCCCEEEEEcc--cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh----------cC----CceEEEecccc--
Q 029656           30 QSNMRILVTGG--AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI----------GH----PRFELIRHDVT--   91 (190)
Q Consensus        30 ~~~~~vlItG~--~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~----------~~----~~~~~~~~D~~--   91 (190)
                      +++|+++|||+  +..||.++++.|++. |.+|++ .|+.+..+.....+.          ..    .....+.+|+.  
T Consensus         7 l~gk~alITGa~~s~GIG~a~A~~la~~-Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~   84 (303)
T PLN02730          7 LRGKRAFIAGVADDNGYGWAIAKALAAA-GAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFD   84 (303)
T ss_pred             CCCCEEEEeCCCCCCcHHHHHHHHHHHC-CCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecC
Confidence            58899999999  799999999999999 888877 444332221111110          00    11355677772  


Q ss_pred             ccc------------------------------cCCcCEEEEccCCCCC---c---ccccCchhHHHHHHHHHHHHHHHH
Q 029656           92 EPL------------------------------LIEVDQIYHLACPASP---I---FYKYNPVKTIKTNVIGTLNMLGLA  135 (190)
Q Consensus        92 ~~~------------------------------~~~~d~vi~~ag~~~~---~---~~~~~~~~~~~~n~~~~~~l~~~~  135 (190)
                      +.+                              +.++|++|||||....   .   ...+.+...+++|+.++..+.+.+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~  164 (303)
T PLN02730         85 TPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHF  164 (303)
T ss_pred             ccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence            111                              2359999999974321   1   123345667999999999998877


Q ss_pred             HHc---CCeEEEEecce
Q 029656          136 KRV---GARILLTSTSE  149 (190)
Q Consensus       136 ~~~---~~~~i~vSS~~  149 (190)
                      ...   ..++|++||..
T Consensus       165 ~p~m~~~G~II~isS~a  181 (303)
T PLN02730        165 GPIMNPGGASISLTYIA  181 (303)
T ss_pred             HHHHhcCCEEEEEechh
Confidence            543   24899999855

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=99.22  E-value=8.3e-11  Score=92.71  Aligned_cols=96  Identities=22%  Similarity=0.324  Sum_probs=72.3

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----c------CC-cCEE
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----L------IE-VDQI  101 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~------~~-~d~v  101 (190)
                      +|+||||||++|+++++.|+++ +++|+++.|++....        ...+..+.+|+.|.+     +      .+ +|.|
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~-g~~V~~~~R~~~~~~--------~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v   71 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAA-SVPFLVASRSSSSSA--------GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAV   71 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhC-CCcEEEEeCCCcccc--------CCCCccccccCCCHHHHHHHHhcccCcCCceeEE
Confidence            4899999999999999999999 899999999765432        124556678888753     2      35 8999


Q ss_pred             EEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceec
Q 029656          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY  151 (190)
Q Consensus       102 i~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~  151 (190)
                      +|+++...      ..       .....+++++|++.++ |+|++||..++
T Consensus        72 ~~~~~~~~------~~-------~~~~~~~i~aa~~~gv~~~V~~Ss~~~~  109 (285)
T TIGR03649        72 YLVAPPIP------DL-------APPMIKFIDFARSKGVRRFVLLSASIIE  109 (285)
T ss_pred             EEeCCCCC------Ch-------hHHHHHHHHHHHHcCCCEEEEeeccccC
Confidence            99986321      00       1234678999999997 89999986643

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=99.13  E-value=1.6e-09  Score=78.68  Aligned_cols=103  Identities=14%  Similarity=0.204  Sum_probs=79.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-----CCcCEEEEccCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----IEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~d~vi~~ag~  107 (190)
                      |+|.|+|++|.+|+.++++..++ ||+|+++.|++.+....       +.+..++.|+.|.+.     .+.|+||..-+.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~R-GHeVTAivRn~~K~~~~-------~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~   72 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKR-GHEVTAIVRNASKLAAR-------QGVTILQKDIFDLTSLASDLAGHDAVISAFGA   72 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhC-CCeeEEEEeChHhcccc-------ccceeecccccChhhhHhhhcCCceEEEeccC
Confidence            68999999999999999999999 99999999976654431       467888999998754     579999998875


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceec
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY  151 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~  151 (190)
                      ..+.     .++   ........+++..+..++ |++.|+.++..
T Consensus        73 ~~~~-----~~~---~~~k~~~~li~~l~~agv~RllVVGGAGSL  109 (211)
T COG2910          73 GASD-----NDE---LHSKSIEALIEALKGAGVPRLLVVGGAGSL  109 (211)
T ss_pred             CCCC-----hhH---HHHHHHHHHHHHHhhcCCeeEEEEcCccce
Confidence            4321     111   122335678888898887 99999987643

>PRK06720 hypothetical protein; Provisional

Probab=99.12  E-value=1e-09  Score=80.21  Aligned_cols=79  Identities=18%  Similarity=0.154  Sum_probs=59.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------------cC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------------LI   96 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------------~~   96 (190)
                      +++++++||||+++||+.+++.|++. |.+|.+.+|+.+........+.. ...+.++.+|+.+..            +.
T Consensus        14 l~gk~~lVTGa~~GIG~aia~~l~~~-G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G   92 (169)
T PRK06720         14 LAGKVAIVTGGGIGIGRNTALLLAKQ-GAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFS   92 (169)
T ss_pred             cCCCEEEEecCCChHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46799999999999999999999998 89999998865433222222211 235677889998753            23


Q ss_pred             CcCEEEEccCCCC
Q 029656           97 EVDQIYHLACPAS  109 (190)
Q Consensus        97 ~~d~vi~~ag~~~  109 (190)
                      ++|++|||||...
T Consensus        93 ~iDilVnnAG~~~  105 (169)
T PRK06720         93 RIDMLFQNAGLYK  105 (169)
T ss_pred             CCCEEEECCCcCC
Confidence            6999999999655

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.12  E-value=4.3e-10  Score=109.00  Aligned_cols=122  Identities=20%  Similarity=0.138  Sum_probs=89.9

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC----------h---------------------------
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS----------K---------------------------   71 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~----------~---------------------------   71 (190)
                      +..+++++||||++.||..+++.|+++++++|++++|+....          .                           
T Consensus      1994 l~~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~ 2073 (2582)
T TIGR02813      1994 LNSDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALV 2073 (2582)
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcc
Confidence            346899999999999999999999998668999999872100          0                           


Q ss_pred             ----------hhhhhhh-cCCceEEEecccccccc-----------CCcCEEEEccCCCCCcc----cccCchhHHHHHH
Q 029656           72 ----------DNLRKWI-GHPRFELIRHDVTEPLL-----------IEVDQIYHLACPASPIF----YKYNPVKTIKTNV  125 (190)
Q Consensus        72 ----------~~~~~~~-~~~~~~~~~~D~~~~~~-----------~~~d~vi~~ag~~~~~~----~~~~~~~~~~~n~  125 (190)
                                ..+..+. ....+.++.+|++|...           .++|+|||+||......    ..+.+...+++|+
T Consensus      2074 ~~~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv 2153 (2582)
T TIGR02813      2074 RPVLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKV 2153 (2582)
T ss_pred             cccchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHH
Confidence                      0011111 12467889999999632           25999999999755322    2344666899999


Q ss_pred             HHHHHHHHHHHHcCC-eEEEEeccee
Q 029656          126 IGTLNMLGLAKRVGA-RILLTSTSEV  150 (190)
Q Consensus       126 ~~~~~l~~~~~~~~~-~~i~vSS~~~  150 (190)
                      .++.++++++..... +||++||...
T Consensus      2154 ~G~~~Ll~al~~~~~~~IV~~SSvag 2179 (2582)
T TIGR02813      2154 DGLLSLLAALNAENIKLLALFSSAAG 2179 (2582)
T ss_pred             HHHHHHHHHHHHhCCCeEEEEechhh
Confidence            999999999987664 7999999763

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.02  E-value=1.6e-09  Score=84.76  Aligned_cols=116  Identities=22%  Similarity=0.205  Sum_probs=86.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhh---cCCceEEEecccccccc------------CC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      .+++||||+..||++++..+..+ |+.|.++.|+.++.......+.   ....+.+..+|+.|.+.            ..
T Consensus        34 ~hi~itggS~glgl~la~e~~~~-ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~  112 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECKRE-GADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGP  112 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHHHc-cCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCC
Confidence            68999999999999999999999 9999999997655544443332   22346688899976531            24


Q ss_pred             cCEEEEccCCCCCccccc-C---chhHHHHHHHHHHHHHHHHHH----cC-C-eEEEEecce
Q 029656           98 VDQIYHLACPASPIFYKY-N---PVKTIKTNVIGTLNMLGLAKR----VG-A-RILLTSTSE  149 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~~-~---~~~~~~~n~~~~~~l~~~~~~----~~-~-~~i~vSS~~  149 (190)
                      +|.+|||||...+...++ +   .+..+++|+.++.+++++...    .. . +++.+||..
T Consensus       113 ~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~  174 (331)
T KOG1210|consen  113 IDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQL  174 (331)
T ss_pred             cceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhh
Confidence            999999999777655443 2   335689999999999876643    22 2 788898844

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=99.00  E-value=7.2e-09  Score=81.16  Aligned_cols=117  Identities=22%  Similarity=0.218  Sum_probs=86.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccC--------------
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI--------------   96 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--------------   96 (190)
                      ..+-|+|||.-...|+.+++.|.++ |..|++-.-.++..+ .+......++...++.|+++++..              
T Consensus        28 ~~k~VlITGCDSGfG~~LA~~L~~~-Gf~V~Agcl~~~gae-~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~  105 (322)
T KOG1610|consen   28 SDKAVLITGCDSGFGRLLAKKLDKK-GFRVFAGCLTEEGAE-SLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGED  105 (322)
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHhc-CCEEEEEeecCchHH-HHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcccc
Confidence            4577999999999999999999999 899999874433333 333333367888899999987532              


Q ss_pred             CcCEEEEccCCCCCcc-----cccCchhHHHHHHHHHHHHHHHH----HHcCCeEEEEecce
Q 029656           97 EVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLA----KRVGARILLTSTSE  149 (190)
Q Consensus        97 ~~d~vi~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~i~vSS~~  149 (190)
                      +.=.||||||+.....     ..++....+++|+.|+.++.+..    ++...|+|++||.+
T Consensus       106 gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~  167 (322)
T KOG1610|consen  106 GLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVL  167 (322)
T ss_pred             cceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEecccc
Confidence            4778999999654321     12345567999999998877665    45556999999954

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=98.95  E-value=7.4e-09  Score=79.28  Aligned_cols=97  Identities=25%  Similarity=0.372  Sum_probs=68.8

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCCCC
Q 029656           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACPAS  109 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~~~  109 (190)
                      |+|+||+|.+|+.+++.|++. +++|.++.|+..  ......+. ..+++.+.+|..|.+     +.++|+||++.+...
T Consensus         1 I~V~GatG~~G~~v~~~L~~~-~~~V~~l~R~~~--~~~~~~l~-~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSA-GFSVRALVRDPS--SDRAQQLQ-ALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT-TGCEEEEESSSH--HHHHHHHH-HTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred             CEEECCccHHHHHHHHHHHhC-CCCcEEEEeccc--hhhhhhhh-cccceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence            789999999999999999997 899999999752  11222222 236688899998764     568999999886432


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEec
Q 029656          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS  147 (190)
                      .            .......++++++++.+++.+..||
T Consensus        77 ~------------~~~~~~~~li~Aa~~agVk~~v~ss  102 (233)
T PF05368_consen   77 P------------SELEQQKNLIDAAKAAGVKHFVPSS  102 (233)
T ss_dssp             C------------CHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred             h------------hhhhhhhhHHHhhhccccceEEEEE
Confidence            1            1233457899999999984444565

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.94  E-value=4.5e-09  Score=78.12  Aligned_cols=116  Identities=18%  Similarity=0.169  Sum_probs=85.4

Q ss_pred             CCEEEEEc-ccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc-------------CC
Q 029656           32 NMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------------IE   97 (190)
Q Consensus        32 ~~~vlItG-~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------------~~   97 (190)
                      .+.|+||| +.|.||.+|++++.+. |+.|.+..|+.+...+...    ..++.....|+.+++.             .+
T Consensus         7 ~k~VlItgcs~GGIG~ala~ef~~~-G~~V~AtaR~~e~M~~L~~----~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gk   81 (289)
T KOG1209|consen    7 PKKVLITGCSSGGIGYALAKEFARN-GYLVYATARRLEPMAQLAI----QFGLKPYKLDVSKPEEVVTVSGEVRANPDGK   81 (289)
T ss_pred             CCeEEEeecCCcchhHHHHHHHHhC-CeEEEEEccccchHhhHHH----hhCCeeEEeccCChHHHHHHHHHHhhCCCCc
Confidence            37788886 5799999999999999 9999999998776654432    3367888899998742             24


Q ss_pred             cCEEEEccCCCCCcccc----cCchhHHHHHHHHHHHHHHHHH----HcCCeEEEEecceecC
Q 029656           98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~~~~~i~vSS~~~~~  152 (190)
                      +|+++||||........    ..-+..|++|+-|..+..++..    +.+..+|++.|...|-
T Consensus        82 ld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~v  144 (289)
T KOG1209|consen   82 LDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVV  144 (289)
T ss_pred             eEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEe
Confidence            99999999965532211    2244578999888777666554    3344899999966543

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=98.93  E-value=1.4e-08  Score=80.83  Aligned_cols=119  Identities=13%  Similarity=0.089  Sum_probs=72.9

Q ss_pred             cCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCC---------CCCh-hhhhh--------------h-hcCCc
Q 029656           30 QSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYF---------TGSK-DNLRK--------------W-IGHPR   82 (190)
Q Consensus        30 ~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~---------~~~~-~~~~~--------------~-~~~~~   82 (190)
                      +++|+++|||++  ..||+++++.|+++ |.+|.+.++.+         +... .....              + .+...
T Consensus         6 ~~gk~alITGa~~~~GIG~a~A~~la~~-Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~   84 (299)
T PRK06300          6 LTGKIAFIAGIGDDQGYGWGIAKALAEA-GATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDT   84 (299)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHC-CCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcCC
Confidence            478999999995  89999999999999 89988865431         0000 00000              0 00001


Q ss_pred             eEEEeccccc---------c-----------ccCCcCEEEEccCCCC---Ccc---cccCchhHHHHHHHHHHHHHHHHH
Q 029656           83 FELIRHDVTE---------P-----------LLIEVDQIYHLACPAS---PIF---YKYNPVKTIKTNVIGTLNMLGLAK  136 (190)
Q Consensus        83 ~~~~~~D~~~---------~-----------~~~~~d~vi~~ag~~~---~~~---~~~~~~~~~~~n~~~~~~l~~~~~  136 (190)
                      .+-+.+|+.+         +           .+.++|++|||||...   ...   ..+.++..+++|+.++.++.+++.
T Consensus        85 ~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~  164 (299)
T PRK06300         85 PEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFG  164 (299)
T ss_pred             CEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence            1112122222         0           1235999999998532   111   123455678999999999988875


Q ss_pred             Hc---CCeEEEEecce
Q 029656          137 RV---GARILLTSTSE  149 (190)
Q Consensus       137 ~~---~~~~i~vSS~~  149 (190)
                      ..   ..++|++||..
T Consensus       165 p~m~~~G~ii~iss~~  180 (299)
T PRK06300        165 PIMNPGGSTISLTYLA  180 (299)
T ss_pred             HHhhcCCeEEEEeehh
Confidence            43   23788888744

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=98.91  E-value=3.9e-09  Score=81.18  Aligned_cols=110  Identities=22%  Similarity=0.224  Sum_probs=81.4

Q ss_pred             ccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------c-CCcCEEEE
Q 029656           39 GGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------L-IEVDQIYH  103 (190)
Q Consensus        39 G~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~-~~~d~vi~  103 (190)
                      |++  +.||+++++.|+++ |++|++++|+.+.....+..+........+.+|+.+++            + .++|++||
T Consensus         1 g~~~s~GiG~aia~~l~~~-Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~   79 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEE-GANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVN   79 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHT-TEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEE
T ss_pred             CCCCCCChHHHHHHHHHHC-CCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEe
Confidence            556  99999999999999 89999999987765444555543334557999999863            3 57999999


Q ss_pred             ccCCCCC-----cc---cccCchhHHHHHHHHHHHHHHHHHHc---CCeEEEEecce
Q 029656          104 LACPASP-----IF---YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus       104 ~ag~~~~-----~~---~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~  149 (190)
                      |+|....     ..   ..+.....+++|+.+...+++.+.+.   +.++|++||..
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~  136 (241)
T PF13561_consen   80 NAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIA  136 (241)
T ss_dssp             EEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGG
T ss_pred             cccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchh
Confidence            9986553     11   11234567899999999998888543   23799999854

...

>PTZ00325 malate dehydrogenase; Provisional

Probab=98.87  E-value=4.5e-08  Score=78.42  Aligned_cols=116  Identities=16%  Similarity=0.072  Sum_probs=80.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCCChhhhhhhhcC-CceEEEe-ccccc--cccCCcCEEEEc
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGH-PRFELIR-HDVTE--PLLIEVDQIYHL  104 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~-~D~~~--~~~~~~d~vi~~  104 (190)
                      .+|++|.|+|++|.||..++..|+.++ ..++.++++.  .......++.+. ....... .|..+  +++.++|+||++
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~--~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVit   83 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV--GAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLIC   83 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC--CCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEEC
Confidence            478899999999999999999998663 3578888882  222211122111 1222221 12122  456789999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecce
Q 029656          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE  149 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~  149 (190)
                      +|....  ...+..+.+..|+..+.++++.+++++. ++|+++|--
T Consensus        84 aG~~~~--~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNP  127 (321)
T PTZ00325         84 AGVPRK--PGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNP  127 (321)
T ss_pred             CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence            996432  2345677899999999999999999997 899998844

>PRK08309 short chain dehydrogenase; Provisional

Probab=98.86  E-value=7.9e-09  Score=76.11  Aligned_cols=98  Identities=14%  Similarity=0.073  Sum_probs=68.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------------CCcCE
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVDQ  100 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~d~  100 (190)
                      |+++||||+|++|. +++.|+++ |++|.++.|+.+........+.....+.++.+|+.|.+.            ..+|+
T Consensus         1 m~vlVtGGtG~gg~-la~~L~~~-G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~   78 (177)
T PRK08309          1 MHALVIGGTGMLKR-VSLWLCEK-GFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDL   78 (177)
T ss_pred             CEEEEECcCHHHHH-HHHHHHHC-cCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeE
Confidence            57999999988775 99999999 899999888654332222222223468888999998642            24777


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCe-----EEEEeccee
Q 029656          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-----ILLTSTSEV  150 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~i~vSS~~~  150 (190)
                      +|+.+-                  ..++.++.++|++.+++     ++++=...+
T Consensus        79 lv~~vh------------------~~~~~~~~~~~~~~gv~~~~~~~~h~~gs~~  115 (177)
T PRK08309         79 AVAWIH------------------SSAKDALSVVCRELDGSSETYRLFHVLGSAA  115 (177)
T ss_pred             EEEecc------------------ccchhhHHHHHHHHccCCCCceEEEEeCCcC
Confidence            776652                  33467899999988754     887765443

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=98.86  E-value=9.3e-09  Score=80.43  Aligned_cols=117  Identities=13%  Similarity=0.077  Sum_probs=85.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC--CceEEEecccccccc-----------CCc
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH--PRFELIRHDVTEPLL-----------IEV   98 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~-----------~~~   98 (190)
                      +.=++|||||..||++.+++|+++ |.+|.+++|..++.+....++...  ..++++..|..+...           ..+
T Consensus        49 g~WAVVTGaTDGIGKayA~eLAkr-G~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~V  127 (312)
T KOG1014|consen   49 GSWAVVTGATDGIGKAYARELAKR-GFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDV  127 (312)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCce
Confidence            455889999999999999999999 899999999888877666666544  458888899987652           236


Q ss_pred             CEEEEccCCCCCc--cccc----CchhHHHHHHHHHHHHHHHHHH----cCC-eEEEEecce
Q 029656           99 DQIYHLACPASPI--FYKY----NPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSE  149 (190)
Q Consensus        99 d~vi~~ag~~~~~--~~~~----~~~~~~~~n~~~~~~l~~~~~~----~~~-~~i~vSS~~  149 (190)
                      -++|||+|.....  ...+    ....++.+|+.++..+.+....    .+. -++++||..
T Consensus       128 gILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~a  189 (312)
T KOG1014|consen  128 GILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFA  189 (312)
T ss_pred             EEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEecccc
Confidence            6899999966521  1111    2235678888888777666532    232 699999843

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=98.85  E-value=5e-09  Score=75.67  Aligned_cols=118  Identities=17%  Similarity=0.133  Sum_probs=84.7

Q ss_pred             ccccCCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-----ccCCcCE
Q 029656           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQ  100 (190)
Q Consensus        27 ~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~d~  100 (190)
                      ++-+.+|..+|.|++|-.|+.+++.+++++. .+|+++.|+....+..      ...+.....|....     ...++|+
T Consensus        13 Df~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at------~k~v~q~~vDf~Kl~~~a~~~qg~dV   86 (238)
T KOG4039|consen   13 DFRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPAT------DKVVAQVEVDFSKLSQLATNEQGPDV   86 (238)
T ss_pred             HHhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccc------cceeeeEEechHHHHHHHhhhcCCce
Confidence            4446789999999999999999999999854 5888888874332221      12344444555432     3468999


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEecceecCC
Q 029656          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD  153 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~~~~  153 (190)
                      .|++.|-+..   ....+..++++-.....+.+++++.++ +++++||.++...
T Consensus        87 ~FcaLgTTRg---kaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~s  137 (238)
T KOG4039|consen   87 LFCALGTTRG---KAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPS  137 (238)
T ss_pred             EEEeeccccc---ccccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcc
Confidence            9999985543   223445566667777788999999998 8999999876543

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.83  E-value=1.3e-09  Score=78.57  Aligned_cols=117  Identities=20%  Similarity=0.135  Sum_probs=88.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccC--------CcCEE
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI--------EVDQI  101 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--------~~d~v  101 (190)
                      +.|+.|++||+.-.||+.+++.|.+. |..|+++.|++.......++-  ..-+..+.+|+.+.+..        .+|.+
T Consensus         5 laG~~vlvTgagaGIG~~~v~~La~a-GA~ViAvaR~~a~L~sLV~e~--p~~I~Pi~~Dls~wea~~~~l~~v~pidgL   81 (245)
T KOG1207|consen    5 LAGVIVLVTGAGAGIGKEIVLSLAKA-GAQVIAVARNEANLLSLVKET--PSLIIPIVGDLSAWEALFKLLVPVFPIDGL   81 (245)
T ss_pred             ccceEEEeecccccccHHHHHHHHhc-CCEEEEEecCHHHHHHHHhhC--CcceeeeEecccHHHHHHHhhcccCchhhh
Confidence            47899999999999999999999999 899999999766554443321  23488899999986432        38999


Q ss_pred             EEccCCCCCcc----cccCchhHHHHHHHHHHHHHHHHHH----cC--CeEEEEecce
Q 029656          102 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSE  149 (190)
Q Consensus       102 i~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~i~vSS~~  149 (190)
                      +|+||+.-...    .+++.+..|++|+.+..++.+..++    +.  ..++.+||.+
T Consensus        82 VNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqa  139 (245)
T KOG1207|consen   82 VNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQA  139 (245)
T ss_pred             hccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchh
Confidence            99999654322    2345666789999999888877543    22  2699999955

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=98.79  E-value=1.2e-08  Score=78.68  Aligned_cols=91  Identities=16%  Similarity=0.094  Sum_probs=68.5

Q ss_pred             HHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc---------CCcCEEEEccCCCCCcccccCch
Q 029656           48 LVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL---------IEVDQIYHLACPASPIFYKYNPV  118 (190)
Q Consensus        48 l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~---------~~~d~vi~~ag~~~~~~~~~~~~  118 (190)
                      +++.|+++ |++|++++|+.....          ...++++|+.+.+.         .++|+||||||...    ....+
T Consensus         1 ~a~~l~~~-G~~Vv~~~r~~~~~~----------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~~~~   65 (241)
T PRK12428          1 TARLLRFL-GARVIGVDRREPGMT----------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TAPVE   65 (241)
T ss_pred             ChHHHHhC-CCEEEEEeCCcchhh----------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CCCHH
Confidence            46788888 899999988654321          13467889987632         25999999998653    23567


Q ss_pred             hHHHHHHHHHHHHHHHHHHc---CCeEEEEecceecCC
Q 029656          119 KTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYGD  153 (190)
Q Consensus       119 ~~~~~n~~~~~~l~~~~~~~---~~~~i~vSS~~~~~~  153 (190)
                      ..+++|+.++..+++.+.+.   +.++|++||...|+.
T Consensus        66 ~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~  103 (241)
T PRK12428         66 LVARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEW  103 (241)
T ss_pred             HhhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhcc
Confidence            88999999999999988653   249999999988763

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.68  E-value=1.4e-07  Score=77.14  Aligned_cols=117  Identities=20%  Similarity=0.243  Sum_probs=74.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------c--C--CcC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------L--I--EVD   99 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~--~--~~d   99 (190)
                      .+.++|+|+||+|.+|+-+++.|+++ |+.|.++.|+.....+.+..........-+..|.....      .  .  ...
T Consensus        77 ~~~~~VlVvGatG~vG~~iv~~llkr-gf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~~  155 (411)
T KOG1203|consen   77 KKPTTVLVVGATGKVGRRIVKILLKR-GFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKGVV  155 (411)
T ss_pred             CCCCeEEEecCCCchhHHHHHHHHHC-CCeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhccccce
Confidence            35689999999999999999999999 79999999976555444330000111111112221111      0  1  133


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEeccee
Q 029656          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEV  150 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~  150 (190)
                      +++-++|...  . +++....+++...++.|++++|+..++ |++++|+.+.
T Consensus       156 ~v~~~~ggrp--~-~ed~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~  204 (411)
T KOG1203|consen  156 IVIKGAGGRP--E-EEDIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGG  204 (411)
T ss_pred             eEEecccCCC--C-cccCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecC
Confidence            4455554211  1 111223457889999999999999998 9999988553

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.68  E-value=1.6e-07  Score=73.08  Aligned_cols=104  Identities=21%  Similarity=0.235  Sum_probs=73.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~  107 (190)
                      ++|+||||||++|+++++.|+++ +++|.+..|+.+......      ..+.+...|+.+..     ..+.|.++++.+.
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~~~~~~~~~------~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~   73 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRNPEAAAALA------GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGL   73 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhC-CCEEEEEEeCHHHHHhhc------CCcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence            57999999999999999999999 999999999766554332      47888889999864     3579999888864


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEeccee
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEV  150 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS~~~  150 (190)
                      .. .    .. ...........+..+.+. .+. +++++|....
T Consensus        74 ~~-~----~~-~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~  110 (275)
T COG0702          74 LD-G----SD-AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGA  110 (275)
T ss_pred             cc-c----cc-chhHHHHHHHHHHHHHhc-CCceEEEEeccCCC
Confidence            43 1    11 223334444444444444 233 6888876443

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=98.61  E-value=6.6e-07  Score=72.02  Aligned_cols=111  Identities=15%  Similarity=0.114  Sum_probs=71.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcC------CCeEEEEcCCCCC--ChhhhhhhhcCCceEEEecccc---c--cccCCcC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENE------KNEVIVVDNYFTG--SKDNLRKWIGHPRFELIRHDVT---E--PLLIEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~------~~~v~~~~r~~~~--~~~~~~~~~~~~~~~~~~~D~~---~--~~~~~~d   99 (190)
                      .+|+|||++|+||.+++..|+.++      +.++.++++....  ......++.+..  .....|+.   +  +.+.++|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~--~~~~~~~~~~~~~~~~l~~aD   80 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCA--FPLLKSVVATTDPEEAFKDVD   80 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhcc--ccccCCceecCCHHHHhCCCC
Confidence            469999999999999999999853      2489999885432  111111111000  00011211   1  3456899


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-C-C-eEEEEec
Q 029656          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-G-A-RILLTST  147 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~-~-~~i~vSS  147 (190)
                      +|||+||....  ...+..+.++.|+.-...+.+...++ + . .+|.+|.
T Consensus        81 iVI~tAG~~~~--~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN  129 (325)
T cd01336          81 VAILVGAMPRK--EGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN  129 (325)
T ss_pred             EEEEeCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            99999996543  23456788999999999998888777 2 2 5666665

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00106 malate dehydrogenase

Probab=98.55  E-value=2.5e-06  Score=68.52  Aligned_cols=113  Identities=12%  Similarity=-0.021  Sum_probs=77.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC-CceEEEe-cccc--ccccCCcCEEEEcc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH-PRFELIR-HDVT--EPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~-~D~~--~~~~~~~d~vi~~a  105 (190)
                      ...+|.|+|++|.||..++..|+.++. .++.+++...  ......++.+. ....... .+-.  -+++.++|+||++|
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitA   94 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPA   94 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeC
Confidence            347899999999999999999997643 4788888755  22111122111 1112211 0111  13567899999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEec
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST  147 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS  147 (190)
                      |....  ......+.+..|+..+.++.+.+++++. .+|+++|
T Consensus        95 G~~~~--~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvS  135 (323)
T PLN00106         95 GVPRK--PGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIIS  135 (323)
T ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            96543  2345677899999999999999999886 6777776

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.55  E-value=3.5e-07  Score=74.64  Aligned_cols=94  Identities=26%  Similarity=0.306  Sum_probs=69.5

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLAC  106 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag  106 (190)
                      ||+|+|.|+ |+||+.++..|++++..+|++.+|+.+.........  ..++...++|+.|..     ..+.|+|||++.
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~--~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI--GGKVEALQVDAADVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc--cccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence            578999996 999999999999994489999999644332221111  237899999999873     346899999995


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEe
Q 029656          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS  146 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vS  146 (190)
                      ...                  ..+++++|.+.++.++=+|
T Consensus        78 ~~~------------------~~~i~ka~i~~gv~yvDts   99 (389)
T COG1748          78 PFV------------------DLTILKACIKTGVDYVDTS   99 (389)
T ss_pred             chh------------------hHHHHHHHHHhCCCEEEcc
Confidence            322                  2367888888887777555

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.46  E-value=2.2e-07  Score=67.06  Aligned_cols=120  Identities=23%  Similarity=0.292  Sum_probs=88.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------------cCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------------LIE   97 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------------~~~   97 (190)
                      .++...+||||...+|+..++.|.++ |..|.+++-...+..+..+++.  .++.|...|++.+.            +.+
T Consensus         7 ~kglvalvtggasglg~ataerlakq-gasv~lldlp~skg~~vakelg--~~~vf~padvtsekdv~aala~ak~kfgr   83 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAKQ-GASVALLDLPQSKGADVAKELG--GKVVFTPADVTSEKDVRAALAKAKAKFGR   83 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHhc-CceEEEEeCCcccchHHHHHhC--CceEEeccccCcHHHHHHHHHHHHhhccc
Confidence            36788999999999999999999999 8899888876666666666653  47788889998763            346


Q ss_pred             cCEEEEccCCCCCccc----------ccCchhHHHHHHHHHHHHHHHHHHc---------CCe--EEEEecceecC
Q 029656           98 VDQIYHLACPASPIFY----------KYNPVKTIKTNVIGTLNMLGLAKRV---------GAR--ILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~----------~~~~~~~~~~n~~~~~~l~~~~~~~---------~~~--~i~vSS~~~~~  152 (190)
                      .|+.+||||.......          .++....+++|+.+++|+++.....         +-|  +|.+.|..+|.
T Consensus        84 ld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafd  159 (260)
T KOG1199|consen   84 LDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFD  159 (260)
T ss_pred             eeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeec
Confidence            9999999996543211          1233456889999999998866421         224  66666655554

>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]

Probab=98.44  E-value=1e-06  Score=67.35  Aligned_cols=120  Identities=14%  Similarity=0.129  Sum_probs=86.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC----eEEEEcCCCCCChhhhhhhh---c--CCceEEEeccccccc-------
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKN----EVIVVDNYFTGSKDNLRKWI---G--HPRFELIRHDVTEPL-------   94 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~----~v~~~~r~~~~~~~~~~~~~---~--~~~~~~~~~D~~~~~-------   94 (190)
                      +.|.++|||++..||..++..|++....    .+++..|+-++.++....+.   +  ...++++..|+++-.       
T Consensus         2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~   81 (341)
T KOG1478|consen    2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK   81 (341)
T ss_pred             CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence            3477999999999999999999997332    46667887777766555543   3  346888999999853       


Q ss_pred             -----cCCcCEEEEccCCCCCcc-------------------------------cccCchhHHHHHHHHHHHHHHHHHHc
Q 029656           95 -----LIEVDQIYHLACPASPIF-------------------------------YKYNPVKTIKTNVIGTLNMLGLAKRV  138 (190)
Q Consensus        95 -----~~~~d~vi~~ag~~~~~~-------------------------------~~~~~~~~~~~n~~~~~~l~~~~~~~  138 (190)
                           +.++|.|+-|||.+....                               +.++..++|+.|+-|.+-+++.....
T Consensus        82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl  161 (341)
T KOG1478|consen   82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL  161 (341)
T ss_pred             HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence                 346999999999765321                               01122357999999998887766443


Q ss_pred             C-----CeEEEEeccee
Q 029656          139 G-----ARILLTSTSEV  150 (190)
Q Consensus       139 ~-----~~~i~vSS~~~  150 (190)
                      -     -++|++||..+
T Consensus       162 l~~~~~~~lvwtSS~~a  178 (341)
T KOG1478|consen  162 LCHSDNPQLVWTSSRMA  178 (341)
T ss_pred             hhcCCCCeEEEEeeccc
Confidence            2     28999999654

>PRK09620 hypothetical protein; Provisional

Probab=98.43  E-value=8.4e-07  Score=67.93  Aligned_cols=75  Identities=20%  Similarity=0.453  Sum_probs=50.0

Q ss_pred             CCCEEEEEccc----------------chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEec--cccc
Q 029656           31 SNMRILVTGGA----------------GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH--DVTE   92 (190)
Q Consensus        31 ~~~~vlItG~~----------------G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~--D~~~   92 (190)
                      .|++|+||+|.                ||+|+++++.|+.+ |++|+++.+..........   ....+..+..  |+.+
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~-Ga~V~li~g~~~~~~~~~~---~~~~~~~V~s~~d~~~   77 (229)
T PRK09620          2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISK-GAHVIYLHGYFAEKPNDIN---NQLELHPFEGIIDLQD   77 (229)
T ss_pred             CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHC-CCeEEEEeCCCcCCCcccC---CceeEEEEecHHHHHH
Confidence            68999999886                99999999999999 8999988753221111110   0112333444  4443


Q ss_pred             c---cc--CCcCEEEEccCCCC
Q 029656           93 P---LL--IEVDQIYHLACPAS  109 (190)
Q Consensus        93 ~---~~--~~~d~vi~~ag~~~  109 (190)
                      .   .+  .++|+|||+|+..+
T Consensus        78 ~l~~~~~~~~~D~VIH~AAvsD   99 (229)
T PRK09620         78 KMKSIITHEKVDAVIMAAAGSD   99 (229)
T ss_pred             HHHHHhcccCCCEEEECccccc
Confidence            2   12  36899999999755

>PRK05086 malate dehydrogenase; Provisional

Probab=98.42  E-value=8.3e-06  Score=65.36  Aligned_cols=112  Identities=18%  Similarity=0.098  Sum_probs=73.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhc-C-CCeEEEEcCCCCCChhhhhhhhcCC-ceEEEeccccc--cccCCcCEEEEccCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMEN-E-KNEVIVVDNYFTGSKDNLRKWIGHP-RFELIRHDVTE--PLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~-~-~~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~D~~~--~~~~~~d~vi~~ag~  107 (190)
                      |+++|+|++|.+|++++..|... + ++++.+++|++. ......++.+.. .......+-.+  ..+.++|+||.++|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence            68999999999999999988653 2 357788887643 211111221111 11221111222  345679999999986


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEec
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS  147 (190)
                      ...  ......+.+..|......+++.+++++. ++|.+.|
T Consensus        80 ~~~--~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvs  118 (312)
T PRK05086         80 ARK--PGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIIT  118 (312)
T ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            432  2345667899999999999999999876 6666665

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.35  E-value=1.2e-05  Score=57.05  Aligned_cols=113  Identities=12%  Similarity=0.113  Sum_probs=75.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhh---hcCCceEEEeccccccccCCcCEEEEccCCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      |||.|+|++|.+|++++..|+..+- .++.+++++.........++   ............-..+++.+.|+||..||..
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~   80 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP   80 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence            6899999999999999999999842 57888888644333222222   1112222222222224567899999999864


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029656          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ..  ..++..+.++.|..-...+.+...+..-  .++.+|.
T Consensus        81 ~~--~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtN  119 (141)
T PF00056_consen   81 RK--PGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTN  119 (141)
T ss_dssp             SS--TTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SS
T ss_pred             cc--ccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCC
Confidence            32  2345677889999999999998888763  5666653

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.35  E-value=1.2e-06  Score=72.19  Aligned_cols=90  Identities=26%  Similarity=0.246  Sum_probs=60.1

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-----cCCcCEEEEccCCC
Q 029656           35 ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLACPA  108 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~ag~~  108 (190)
                      |+|.|+ |++|+.+++.|+++... +|.+.+|+.+........+ ...++.+.++|+.|..     ..++|+||||+|+.
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~   78 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-LGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF   78 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-cccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence            689999 99999999999999545 8999999655544333222 3568999999999864     34799999999754


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEE
Q 029656          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL  144 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~  144 (190)
                      .                  ...++++|.+.++++|=
T Consensus        79 ~------------------~~~v~~~~i~~g~~yvD   96 (386)
T PF03435_consen   79 F------------------GEPVARACIEAGVHYVD   96 (386)
T ss_dssp             G------------------HHHHHHHHHHHT-EEEE
T ss_pred             h------------------hHHHHHHHHHhCCCeec
Confidence            1                  13466666666665554

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.29  E-value=6.7e-07  Score=67.22  Aligned_cols=117  Identities=19%  Similarity=0.122  Sum_probs=68.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh-hhhhhcCCceEEEeccccccc------------cCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWIGHPRFELIRHDVTEPL------------LIE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~------------~~~   97 (190)
                      .++-+++||++..||..++..+... +.+.....+.....+.. +..-. .........|++...            ..+
T Consensus         5 ~r~villTGaSrgiG~~~v~~i~ae-d~e~~r~g~~r~~a~~~~L~v~~-gd~~v~~~g~~~e~~~l~al~e~~r~k~gk   82 (253)
T KOG1204|consen    5 MRKVILLTGASRGIGTGSVATILAE-DDEALRYGVARLLAELEGLKVAY-GDDFVHVVGDITEEQLLGALREAPRKKGGK   82 (253)
T ss_pred             cceEEEEecCCCCccHHHHHHHHhc-chHHHHHhhhcccccccceEEEe-cCCcceechHHHHHHHHHHHHhhhhhcCCc
Confidence            4467999999999999999988887 44433332222221100 00000 011222233443321            235


Q ss_pred             cCEEEEccCCCCCcc--c-----ccCchhHHHHHHHHHHHHHHHH----HHcC--CeEEEEecce
Q 029656           98 VDQIYHLACPASPIF--Y-----KYNPVKTIKTNVIGTLNMLGLA----KRVG--ARILLTSTSE  149 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~--~-----~~~~~~~~~~n~~~~~~l~~~~----~~~~--~~~i~vSS~~  149 (190)
                      .|+||||||...+..  +     .+.+..+|+.|+.++..+...+    ++.+  .-+|++||..
T Consensus        83 r~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~a  147 (253)
T KOG1204|consen   83 RDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLA  147 (253)
T ss_pred             eeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchh
Confidence            999999999666521  1     1235568999999887776544    3443  2588999854

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=98.20  E-value=5.5e-06  Score=63.52  Aligned_cols=64  Identities=19%  Similarity=0.376  Sum_probs=43.2

Q ss_pred             cccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccc-------cccCCcCEEEEccCCCC
Q 029656           39 GGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-------PLLIEVDQIYHLACPAS  109 (190)
Q Consensus        39 G~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-------~~~~~~d~vi~~ag~~~  109 (190)
                      .++|++|+++++.|+++ |++|+++.|.......      ....+.++.++..+       ....++|+|||+||...
T Consensus        23 ~SSG~iG~aLA~~L~~~-G~~V~li~r~~~~~~~------~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAvsd   93 (229)
T PRK06732         23 HSTGQLGKIIAETFLAA-GHEVTLVTTKTAVKPE------PHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMAVSD   93 (229)
T ss_pred             ccchHHHHHHHHHHHhC-CCEEEEEECcccccCC------CCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCccCC
Confidence            56899999999999999 8999998775322110      01245555443322       12346899999999765

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=98.18  E-value=3.3e-05  Score=53.22  Aligned_cols=95  Identities=18%  Similarity=0.261  Sum_probs=55.4

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEE-EcCCCCCChhhhhhhhc--CCceEEEeccccccccCCcCEEEEccCCCCC
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLLIEVDQIYHLACPASP  110 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~-~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~  110 (190)
                      ||.|.|++|++|+.+++.|.++...++.. +.++. .....+....+  .......-.+.....+.++|+||.|.+..  
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~--   77 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR-SAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG--   77 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT-TTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH--
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc-ccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh--
Confidence            68999999999999999999986655444 44443 12222222211  11112222223334457899999997411  


Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEec
Q 029656          111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus       111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS  147 (190)
                                      ....+...+.+.++++|=.|+
T Consensus        78 ----------------~~~~~~~~~~~~g~~ViD~s~   98 (121)
T PF01118_consen   78 ----------------ASKELAPKLLKAGIKVIDLSG   98 (121)
T ss_dssp             ----------------HHHHHHHHHHHTTSEEEESSS
T ss_pred             ----------------HHHHHHHHHhhCCcEEEeCCH
Confidence                            124566666777776665554

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>cd00704 MDH Malate dehydrogenase

Probab=98.17  E-value=1.9e-05  Score=63.52  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=71.7

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCC------eEEEEcCCC--CCChhhhhhhhcC-----CceEEEeccccccccCCcCE
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYF--TGSKDNLRKWIGH-----PRFELIRHDVTEPLLIEVDQ  100 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~------~v~~~~r~~--~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~d~  100 (190)
                      +|.|+|++|.+|..++..|+..+-.      ++.+++++.  +...-...++.+.     ..+. +. +-..+.+.++|+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~-i~-~~~~~~~~~aDi   79 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVV-IT-TDPEEAFKDVDV   79 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcE-Ee-cChHHHhCCCCE
Confidence            6999999999999999999986322      488888765  2222111111110     0111 11 112245568999


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CC--eEEEEec
Q 029656          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA--RILLTST  147 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~--~~i~vSS  147 (190)
                      |||.||....  ..+...+.+..|..-...+....+++ +.  .+|.+|.
T Consensus        80 VVitAG~~~~--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN  127 (323)
T cd00704          80 AILVGAFPRK--PGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN  127 (323)
T ss_pred             EEEeCCCCCC--cCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            9999996432  33456778999999999999888877 33  5666664

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=98.17  E-value=2.6e-05  Score=64.12  Aligned_cols=104  Identities=17%  Similarity=0.195  Sum_probs=63.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEE-eccccccccCCcCEEEEccCCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELI-RHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~-~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +.++|.|.||||++|+.+++.|.++...++..+.+...... .+...... ...+.. ..++....+.++|+||.+.+..
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~-~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~  115 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQ-SFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG  115 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCC-CchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence            55799999999999999999999997778888776433221 11111000 000111 0122222246799999987521


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCC
Q 029656          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDP  154 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~  154 (190)
                                        ....++..+ +.++++|-.|+.+-+.+.
T Consensus       116 ------------------~s~~i~~~~-~~g~~VIDlSs~fRl~~~  142 (381)
T PLN02968        116 ------------------TTQEIIKAL-PKDLKIVDLSADFRLRDI  142 (381)
T ss_pred             ------------------HHHHHHHHH-hCCCEEEEcCchhccCCc
Confidence                              234555555 356799999997765543

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.15  E-value=1.7e-05  Score=66.63  Aligned_cols=76  Identities=22%  Similarity=0.236  Sum_probs=56.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh-hhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +++++++|+|+++ +|..+++.|++. |++|+++++.....- .....+ ...++.++..|..+....++|+||+++|..
T Consensus         3 ~~~k~v~iiG~g~-~G~~~A~~l~~~-G~~V~~~d~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~   79 (450)
T PRK14106          3 LKGKKVLVVGAGV-SGLALAKFLKKL-GAKVILTDEKEEDQLKEALEEL-GELGIELVLGEYPEEFLEGVDLVVVSPGVP   79 (450)
T ss_pred             cCCCEEEEECCCH-HHHHHHHHHHHC-CCEEEEEeCCchHHHHHHHHHH-HhcCCEEEeCCcchhHhhcCCEEEECCCCC
Confidence            3679999999777 999999999999 899999988642221 112222 233567888888876666799999999853

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.12  E-value=8e-06  Score=60.94  Aligned_cols=76  Identities=12%  Similarity=0.156  Sum_probs=51.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-----ccCCcCEEEEc
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQIYHL  104 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~d~vi~~  104 (190)
                      +++++++|+||+|.+|+.+++.|++. +++|+++.|+.+........+...........|..+.     ...++|+||++
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~a  104 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAA  104 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence            46799999999999999999999998 7899999886544333222221111233344455443     34579999997


Q ss_pred             cC
Q 029656          105 AC  106 (190)
Q Consensus       105 ag  106 (190)
                      ..
T Consensus       105 t~  106 (194)
T cd01078         105 GA  106 (194)
T ss_pred             CC
Confidence            64

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=98.04  E-value=1.8e-05  Score=65.39  Aligned_cols=69  Identities=23%  Similarity=0.261  Sum_probs=51.2

Q ss_pred             cCCCEEEEEcc----------------cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc
Q 029656           30 QSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP   93 (190)
Q Consensus        30 ~~~~~vlItG~----------------~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~   93 (190)
                      +.+++++||||                +|.+|.++++.|..+ |++|+++.+......        ...+  ..+|+.+.
T Consensus       186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~-Ga~V~~v~~~~~~~~--------~~~~--~~~dv~~~  254 (399)
T PRK05579        186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARR-GADVTLVSGPVNLPT--------PAGV--KRIDVESA  254 (399)
T ss_pred             cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHC-CCEEEEeCCCccccC--------CCCc--EEEccCCH
Confidence            58899999999                899999999999999 899999887542110        1122  23566653


Q ss_pred             ---------ccCCcCEEEEccCCCC
Q 029656           94 ---------LLIEVDQIYHLACPAS  109 (190)
Q Consensus        94 ---------~~~~~d~vi~~ag~~~  109 (190)
                               .+.++|++||+||+..
T Consensus       255 ~~~~~~v~~~~~~~DilI~~Aav~d  279 (399)
T PRK05579        255 QEMLDAVLAALPQADIFIMAAAVAD  279 (399)
T ss_pred             HHHHHHHHHhcCCCCEEEEcccccc
Confidence                     2346999999999755

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=98.02  E-value=0.00015  Score=58.11  Aligned_cols=112  Identities=14%  Similarity=0.082  Sum_probs=73.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCC--CCChhhhhhhhc----C-CceEEEe-ccccccccCCcCEEEE
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYF--TGSKDNLRKWIG----H-PRFELIR-HDVTEPLLIEVDQIYH  103 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~--~~~~~~~~~~~~----~-~~~~~~~-~D~~~~~~~~~d~vi~  103 (190)
                      |+|.|+|++|.+|..++..|+..+. .+|.+++|..  +.......++.+    . ....... .|  ...+.+.|+||-
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d--~~~l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD--LSDVAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC--HHHhCCCCEEEE
Confidence            6899999999999999999999832 2588888843  222222111111    1 1122211 23  234678999999


Q ss_pred             ccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--CeEEEEecc
Q 029656          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTS  148 (190)
Q Consensus       104 ~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~i~vSS~  148 (190)
                      ++|....  ...+..+.+..|......+++...+..  .++|.+++.
T Consensus        79 tag~p~~--~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~np  123 (309)
T cd05294          79 TAGVPRK--EGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNP  123 (309)
T ss_pred             ecCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            9985432  223446778889999999988887764  377777773

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=98.02  E-value=2.7e-05  Score=63.63  Aligned_cols=76  Identities=16%  Similarity=0.112  Sum_probs=52.8

Q ss_pred             CCCEEEEEcccchHHHH--HHHHHHhcCCCeEEEEcCCCCCCh-----------hhhhhhhc--CCceEEEeccccccc-
Q 029656           31 SNMRILVTGGAGFIGSH--LVDKLMENEKNEVIVVDNYFTGSK-----------DNLRKWIG--HPRFELIRHDVTEPL-   94 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~--l~~~L~~~~~~~v~~~~r~~~~~~-----------~~~~~~~~--~~~~~~~~~D~~~~~-   94 (190)
                      .+|+++|||+++.+|.+  +++.| .. |..++++.+..+...           ..+.....  ...+..+.+|+.+.+ 
T Consensus        40 ggK~aLVTGaSsGIGlA~~IA~al-~~-GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~  117 (398)
T PRK13656         40 GPKKVLVIGASSGYGLASRIAAAF-GA-GADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI  117 (398)
T ss_pred             CCCEEEEECCCchHhHHHHHHHHH-Hc-CCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence            46899999999999999  89999 77 787777764321111           11222211  224677899999863 


Q ss_pred             -----------cCCcCEEEEccCCC
Q 029656           95 -----------LIEVDQIYHLACPA  108 (190)
Q Consensus        95 -----------~~~~d~vi~~ag~~  108 (190)
                                 +.++|+|||++|..
T Consensus       118 v~~lie~I~e~~G~IDiLVnSaA~~  142 (398)
T PRK13656        118 KQKVIELIKQDLGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHhcCCCCEEEECCccC
Confidence                       23599999999865

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.99  E-value=9.8e-06  Score=65.38  Aligned_cols=74  Identities=22%  Similarity=0.245  Sum_probs=49.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +.+++|+||||+|+||+.+++.|+.+.+ ..++++.|+.........++ ....  .  .|+ +..+.++|+|||+++..
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el-~~~~--i--~~l-~~~l~~aDiVv~~ts~~  226 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAEL-GGGK--I--LSL-EEALPEADIVVWVASMP  226 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHh-cccc--H--HhH-HHHHccCCEEEECCcCC
Confidence            5789999999999999999999986523 68888888644332221111 1111  1  121 23456799999999864


Q ss_pred             C
Q 029656          109 S  109 (190)
Q Consensus       109 ~  109 (190)
                      .
T Consensus       227 ~  227 (340)
T PRK14982        227 K  227 (340)
T ss_pred             c
Confidence            4

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.99  E-value=2.1e-05  Score=55.32  Aligned_cols=78  Identities=21%  Similarity=0.217  Sum_probs=55.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      +++++++|.| +|..|+.++..|...+-.+|+++.|+.+........+ ....+.....+-......++|+||++.+...
T Consensus        10 l~~~~vlviG-aGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~-~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~   87 (135)
T PF01488_consen   10 LKGKRVLVIG-AGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF-GGVNIEAIPLEDLEEALQEADIVINATPSGM   87 (135)
T ss_dssp             GTTSEEEEES-SSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH-TGCSEEEEEGGGHCHHHHTESEEEE-SSTTS
T ss_pred             cCCCEEEEEC-CHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc-CccccceeeHHHHHHHHhhCCeEEEecCCCC
Confidence            4789999999 5889999999999994456999999655444333333 3345666665544445678999999986543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=97.98  E-value=0.00014  Score=58.64  Aligned_cols=112  Identities=13%  Similarity=0.092  Sum_probs=70.3

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCC------eEEEEcCCCCC--ChhhhhhhhcCC--c-eEEEeccccccccCCcCEEE
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKN------EVIVVDNYFTG--SKDNLRKWIGHP--R-FELIRHDVTEPLLIEVDQIY  102 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~------~v~~~~r~~~~--~~~~~~~~~~~~--~-~~~~~~D~~~~~~~~~d~vi  102 (190)
                      +|.|+|++|.+|..++..|+..+-.      ++.++++....  ......++.+..  . ......+-..+++.++|+||
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999999999999999986322      58888875432  111111111110  0 00111111124556799999


Q ss_pred             EccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C--eEEEEec
Q 029656          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A--RILLTST  147 (190)
Q Consensus       103 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~--~~i~vSS  147 (190)
                      +.||....  ..++..+.+..|+.-...+.+...++. .  .+|.+|.
T Consensus        81 itAG~~~~--~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN  126 (324)
T TIGR01758        81 LVGAFPRK--EGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN  126 (324)
T ss_pred             EcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence            99986432  223467788999999999999888873 3  5666665

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.94  E-value=0.00016  Score=57.90  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=75.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhc-----CCceEEEeccccccccCCcCEEEEccC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      ++|.|.| +|.+|+.++..|+..+. +++.+++++.+.......++.+     .........|.  ....++|+||+++|
T Consensus         1 ~kI~IIG-aG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~--~~l~~aDIVIitag   77 (306)
T cd05291           1 RKVVIIG-AGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY--SDCKDADIVVITAG   77 (306)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH--HHhCCCCEEEEccC
Confidence            4799999 59999999999999832 5899999976655433333311     11222222222  34578999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029656          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ....  ..++..+.++.|..-...+.+.+++++-  .+|.+|.
T Consensus        78 ~~~~--~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN  118 (306)
T cd05291          78 APQK--PGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN  118 (306)
T ss_pred             CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            5432  2345667889999999999988887753  6666665

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.94  E-value=5.9e-05  Score=61.07  Aligned_cols=70  Identities=21%  Similarity=0.250  Sum_probs=45.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCC---eEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKN---EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      +++|+|.|++|++|+.+++.|.++ ++   ++..+.+....... +. + .  .......|+.+....++|+||.++|.
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~-~hp~~~l~~l~s~~~~g~~-l~-~-~--g~~i~v~d~~~~~~~~vDvVf~A~g~   73 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEER-NFPVDKLRLLASARSAGKE-LS-F-K--GKELKVEDLTTFDFSGVDIALFSAGG   73 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC-CCCcceEEEEEccccCCCe-ee-e-C--CceeEEeeCCHHHHcCCCEEEECCCh
Confidence            478999999999999999999996 44   44555554322211 11 1 1  12333345554445689999999863

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=97.93  E-value=5.8e-05  Score=58.76  Aligned_cols=89  Identities=17%  Similarity=0.197  Sum_probs=56.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc-------cCCcCEEEEcc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-------~~~~d~vi~~a  105 (190)
                      |+|+|+||||. |+.+++.|.+. |++|++..+........ .    ......+..+..+..       ..++|+||+++
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~-g~~v~~s~~t~~~~~~~-~----~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAt   73 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQ-GIEILVTVTTSEGKHLY-P----IHQALTVHTGALDPQELREFLKRHSIDILVDAT   73 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhC-CCeEEEEEccCCccccc-c----ccCCceEEECCCCHHHHHHHHHhcCCCEEEEcC
Confidence            57999999999 99999999998 79999988866543221 1    111122233333321       23699999998


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEE
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL  143 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i  143 (190)
                      .+..               ...+.++.++|++.++.++
T Consensus        74 HPfA---------------~~is~~a~~a~~~~~ipyl   96 (256)
T TIGR00715        74 HPFA---------------AQITTNATAVCKELGIPYV   96 (256)
T ss_pred             CHHH---------------HHHHHHHHHHHHHhCCcEE
Confidence            5322               1224566667766665333

This enzyme was found to be a monomer by gel filtration.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.91  E-value=0.00034  Score=56.18  Aligned_cols=112  Identities=13%  Similarity=0.162  Sum_probs=77.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC----CceEEEeccccccccCCcCEEEEcc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      .+++|.|+|+ |.+|..++..|+..+- .++.+++++.+.......++.+.    ..+.....|.  +++.+.|+||..|
T Consensus         5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~--~~~~~adivIita   81 (315)
T PRK00066          5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY--SDCKDADLVVITA   81 (315)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH--HHhCCCCEEEEec
Confidence            3579999996 9999999999998843 37999988766554444333221    1333332222  3567899999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      |....  ..++..+.++.|..-...+++.+++++.  .+|.+|-
T Consensus        82 g~~~k--~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN  123 (315)
T PRK00066         82 GAPQK--PGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN  123 (315)
T ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            86432  2345667889999999998888877653  6666664

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.89  E-value=0.00013  Score=59.48  Aligned_cols=99  Identities=12%  Similarity=0.196  Sum_probs=57.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC----------CceEEEeccccccccCCcCE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----------PRFELIRHDVTEPLLIEVDQ  100 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~d~  100 (190)
                      ++++|.|+||+|++|+.+++.|..+...++..+.++.......+....+.          ..+.+...|.  +...++|+
T Consensus         2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~Dv   79 (349)
T PRK08664          2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP--EAVDDVDI   79 (349)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH--HHhcCCCE
Confidence            45899999999999999999999885557777734322222111111000          0111111121  22347899


Q ss_pred             EEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029656          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       101 vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      ||.+....                  ....+++.+.+.++++|-.|+..
T Consensus        80 Vf~a~p~~------------------~s~~~~~~~~~~G~~vIDls~~f  110 (349)
T PRK08664         80 VFSALPSD------------------VAGEVEEEFAKAGKPVFSNASAH  110 (349)
T ss_pred             EEEeCChh------------------HHHHHHHHHHHCCCEEEECCchh
Confidence            98876321                  02345566667788777777644

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.83  E-value=0.00014  Score=59.07  Aligned_cols=99  Identities=14%  Similarity=0.224  Sum_probs=59.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CC---ceEEEeccccccccCCcCEEEEccCC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HP---RFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~---~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      +++|+|.|++|++|+.+++.|.++.+.++..+.++.... ..+....+ ..   ...+...|  +....++|+||.|...
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g-~~l~~~~~~~~~~~~~~~~~~~--~~~~~~vD~Vf~alP~   78 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAG-KPLSDVHPHLRGLVDLVLEPLD--PEILAGADVVFLALPH   78 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccC-cchHHhCcccccccCceeecCC--HHHhcCCCEEEECCCc
Confidence            479999999999999999999988667776655532221 11111111 00   11122122  1234569999988742


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceec
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~  151 (190)
                      .                  ....++..+.+.++++|=.|+..-+
T Consensus        79 ~------------------~~~~~v~~a~~aG~~VID~S~~fR~  104 (343)
T PRK00436         79 G------------------VSMDLAPQLLEAGVKVIDLSADFRL  104 (343)
T ss_pred             H------------------HHHHHHHHHHhCCCEEEECCcccCC
Confidence            1                  1234555666677788877775544

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=97.82  E-value=2.9e-05  Score=62.14  Aligned_cols=76  Identities=16%  Similarity=0.198  Sum_probs=58.2

Q ss_pred             EEEEEcccchHHHHHHHHHHhc---CCCeEEEEcCCCCCChhhhhhhhcC-----CceEEEecccccccc-----CCcCE
Q 029656           34 RILVTGGAGFIGSHLVDKLMEN---EKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIRHDVTEPLL-----IEVDQ  100 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~---~~~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~-----~~~d~  100 (190)
                      .++|.||+||.|..+++.+++.   .+...-+..|+.++..+.+.....+     ....++.+|..|++.     .++.+
T Consensus         7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~v   86 (423)
T KOG2733|consen    7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQARV   86 (423)
T ss_pred             eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhhEE
Confidence            4899999999999999999993   2667888889887777666655332     233378899988754     46999


Q ss_pred             EEEccCCCC
Q 029656          101 IYHLACPAS  109 (190)
Q Consensus       101 vi~~ag~~~  109 (190)
                      |+||+|+..
T Consensus        87 ivN~vGPyR   95 (423)
T KOG2733|consen   87 IVNCVGPYR   95 (423)
T ss_pred             EEeccccce
Confidence            999998654

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.79  E-value=0.00015  Score=59.02  Aligned_cols=99  Identities=13%  Similarity=0.212  Sum_probs=58.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhhcC--C--ceEEEeccccccccCCcCEEEEccCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIGH--P--RFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~~--~--~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      ++|.|.|+||++|+.+++.|.++...++..+ .++... ...+....+.  .  ...+...|..+ ...++|+||.|.+.
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sa-gk~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~DvVf~alP~   78 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESA-GKPVSEVHPHLRGLVDLNLEPIDEEE-IAEDADVVFLALPH   78 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhc-CCChHHhCccccccCCceeecCCHHH-hhcCCCEEEECCCc
Confidence            5799999999999999999998866777733 433211 1111111110  0  11222222211 12379999998842


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceec
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~  151 (190)
                      .                  ....++..+.+.++++|=.|+..=+
T Consensus        79 ~------------------~s~~~~~~~~~~G~~VIDlS~~fR~  104 (346)
T TIGR01850        79 G------------------VSAELAPELLAAGVKVIDLSADFRL  104 (346)
T ss_pred             h------------------HHHHHHHHHHhCCCEEEeCChhhhc
Confidence            1                  1345666666678889988886533

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.78  E-value=0.00066  Score=54.38  Aligned_cols=112  Identities=16%  Similarity=0.032  Sum_probs=74.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC-CceEEEecccc---ccccCCcCEEEEccCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVT---EPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~---~~~~~~~d~vi~~ag~  107 (190)
                      |+|.|+|++|.+|..++..|+.++- .++.+++.+  ...-...++.+. .........-.   -+++.+.|+||-+||.
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~   78 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV   78 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence            5899999999999999999988733 478888775  222222222222 11122211111   2456789999999986


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEecc
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTS  148 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS~  148 (190)
                      ..  ...+...+.++.|..-...+.+..++++-  .+|.+|..
T Consensus        79 ~~--k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          79 PR--KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             CC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            43  22345677899999999999988887763  67777653

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=97.76  E-value=6.6e-05  Score=57.48  Aligned_cols=83  Identities=14%  Similarity=0.164  Sum_probs=48.9

Q ss_pred             EE-cccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc------------ccCCcCEEEE
Q 029656           37 VT-GGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP------------LLIEVDQIYH  103 (190)
Q Consensus        37 It-G~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~------------~~~~~d~vi~  103 (190)
                      || .++|+||+++++.|+++ |++|.++.+.....     .   .   ....+|+.+.            .+.++|++||
T Consensus        19 itN~SSGgIG~AIA~~la~~-Ga~Vvlv~~~~~l~-----~---~---~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVn   86 (227)
T TIGR02114        19 ITNHSTGHLGKIITETFLSA-GHEVTLVTTKRALK-----P---E---PHPNLSIREIETTKDLLITLKELVQEHDILIH   86 (227)
T ss_pred             ecCCcccHHHHHHHHHHHHC-CCEEEEEcChhhcc-----c---c---cCCcceeecHHHHHHHHHHHHHHcCCCCEEEE
Confidence            44 45899999999999999 89998887531110     0   0   0123455542            1235999999


Q ss_pred             ccCCCCCcc-cccCchhHHHHHHHHHHHH
Q 029656          104 LACPASPIF-YKYNPVKTIKTNVIGTLNM  131 (190)
Q Consensus       104 ~ag~~~~~~-~~~~~~~~~~~n~~~~~~l  131 (190)
                      |||...... ...+.+++.+++..++..+
T Consensus        87 nAgv~d~~~~~~~s~e~~~~~~~~~~~~~  115 (227)
T TIGR02114        87 SMAVSDYTPVYMTDLEQVQASDNLNEFLS  115 (227)
T ss_pred             CCEeccccchhhCCHHHHhhhcchhhhhc
Confidence            999654321 2223344444444444333

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.71  E-value=0.00088  Score=53.99  Aligned_cols=111  Identities=14%  Similarity=0.090  Sum_probs=73.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-C-----eEEEEcCCCCC--ChhhhhhhhcC-----CceEEEeccccccccCCcC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-N-----EVIVVDNYFTG--SKDNLRKWIGH-----PRFELIRHDVTEPLLIEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~-----~v~~~~r~~~~--~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~d   99 (190)
                      ++|.|+|++|.+|..++..|+..+- .     ++.+++.....  ......++.+.     ..+.....  ...++.+.|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~--~~~~~~daD   80 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDD--PNVAFKDAD   80 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecC--cHHHhCCCC
Confidence            6899999999999999999998733 3     68888774332  22222222111     12222211  124567899


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--C-eEEEEec
Q 029656          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTST  147 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~-~~i~vSS  147 (190)
                      +||.+||....  ..++..+.+..|..-...+.....++.  - .+|.+|.
T Consensus        81 ivvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN  129 (322)
T cd01338          81 WALLVGAKPRG--PGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGN  129 (322)
T ss_pred             EEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecC
Confidence            99999986432  234566789999999999998887765  2 6777765

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.71  E-value=0.00069  Score=54.03  Aligned_cols=112  Identities=15%  Similarity=0.084  Sum_probs=74.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcCC----ceEEEeccccccccCCcCEEEEccCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHP----RFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      ++|.|+|+ |.||+.++..|+.+.-. ++.+++...+...-...++.+..    .-..+..|-...++.+.|+|+-.||.
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~   79 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGV   79 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCC
Confidence            57999998 99999999999887434 88898887444433322222111    11122222223456789999999985


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ..  ...+...+.+..|..-...+.+...+..-  .++.++-
T Consensus        80 pr--KpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtN  119 (313)
T COG0039          80 PR--KPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTN  119 (313)
T ss_pred             CC--CCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecC
Confidence            43  23356677889999999999888877764  5555554

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.66  E-value=0.00023  Score=57.58  Aligned_cols=97  Identities=16%  Similarity=0.217  Sum_probs=56.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcC--CCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~--~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      .+++|.|+|+||++|..+++.|.+++  ..++..+... ......+. +. ...+.+...|  ...+.++|+||.+.+..
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~aG~~l~-~~-~~~l~~~~~~--~~~~~~vD~vFla~p~~   77 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESAGHSVP-FA-GKNLRVREVD--SFDFSQVQLAFFAAGAA   77 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccCCCeec-cC-CcceEEeeCC--hHHhcCCCEEEEcCCHH
Confidence            34789999999999999999999752  2233344332 11111111 11 1122332222  22346799999987421


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEeccee
Q 029656          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV  150 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~  150 (190)
                      .                  ...++..+.+.++++|=.|+..=
T Consensus        78 ~------------------s~~~v~~~~~~G~~VIDlS~~fR  101 (336)
T PRK05671         78 V------------------SRSFAEKARAAGCSVIDLSGALP  101 (336)
T ss_pred             H------------------HHHHHHHHHHCCCeEEECchhhc
Confidence            0                  23366677777888887777654

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.65  E-value=0.0006  Score=55.32  Aligned_cols=105  Identities=22%  Similarity=0.283  Sum_probs=68.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh------------------------hhhhhhhcCCceEE
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK------------------------DNLRKWIGHPRFEL   85 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~------------------------~~~~~~~~~~~~~~   85 (190)
                      +.+++|+|.| .|.+|..+++.|+..|-.++.+++++.-...                        ..+..+-+..++..
T Consensus        22 L~~~~VlIiG-~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~  100 (338)
T PRK12475         22 IREKHVLIVG-AGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP  100 (338)
T ss_pred             hcCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence            4678999999 6889999999999994358888887641110                        11222223345666


Q ss_pred             Eecccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029656           86 IRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        86 ~~~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      +..|+...    ...++|+||.+..         +.+.        -..+-+.|.+.++.+|+.+..+.+|
T Consensus       101 ~~~~~~~~~~~~~~~~~DlVid~~D---------~~~~--------r~~in~~~~~~~ip~i~~~~~g~~G  154 (338)
T PRK12475        101 VVTDVTVEELEELVKEVDLIIDATD---------NFDT--------RLLINDLSQKYNIPWIYGGCVGSYG  154 (338)
T ss_pred             EeccCCHHHHHHHhcCCCEEEEcCC---------CHHH--------HHHHHHHHHHcCCCEEEEEecccEE
Confidence            66666532    2356899988862         1111        1235577888888999888766555

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.63  E-value=0.00064  Score=57.09  Aligned_cols=76  Identities=18%  Similarity=0.115  Sum_probs=49.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccC-CcCEEEEccCCCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-EVDQIYHLACPAS  109 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-~~d~vi~~ag~~~  109 (190)
                      .+++++|+|++| +|...++.|++. |+.|.+.++...........+. ..++.+........... ++|.||+++|+..
T Consensus         4 ~~k~v~v~G~g~-~G~s~a~~l~~~-G~~V~~~d~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~   80 (447)
T PRK02472          4 QNKKVLVLGLAK-SGYAAAKLLHKL-GANVTVNDGKPFSENPEAQELL-EEGIKVICGSHPLELLDEDFDLMVKNPGIPY   80 (447)
T ss_pred             CCCEEEEEeeCH-HHHHHHHHHHHC-CCEEEEEcCCCccchhHHHHHH-hcCCEEEeCCCCHHHhcCcCCEEEECCCCCC
Confidence            578999999877 999999999999 8999999876533322222222 22344443222111122 3899999998653

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.62  E-value=0.00042  Score=47.98  Aligned_cols=95  Identities=21%  Similarity=0.325  Sum_probs=54.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEE-EcCCC-CCChhhhhhhhcC--CceEEEeccccccccCCcCEEEEccCCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIV-VDNYF-TGSKDNLRKWIGH--PRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~-~~r~~-~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      ++|.|.|.+|-+|+.+++.+.++.+.++.. +.|+. +.....+..+.+.  ..+... -|+ +..+..+|++|.+..  
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~-~~l-~~~~~~~DVvIDfT~--   76 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT-DDL-EELLEEADVVIDFTN--   76 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB-S-H-HHHTTH-SEEEEES---
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc-hhH-HHhcccCCEEEEcCC--
Confidence            579999999999999999999975766544 45543 1222222222211  112221 222 233445999999862  


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEec
Q 029656          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS  147 (190)
                                      -..+...++.|.++++.+|.-.|
T Consensus        77 ----------------p~~~~~~~~~~~~~g~~~ViGTT   99 (124)
T PF01113_consen   77 ----------------PDAVYDNLEYALKHGVPLVIGTT   99 (124)
T ss_dssp             ----------------HHHHHHHHHHHHHHT-EEEEE-S
T ss_pred             ----------------hHHhHHHHHHHHhCCCCEEEECC
Confidence                            12245678888888877764443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.61  E-value=0.00055  Score=55.63  Aligned_cols=97  Identities=15%  Similarity=0.155  Sum_probs=56.8

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC---eEEEE-cCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKN---EVIVV-DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~---~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      ..++|.|.|++|++|..+++.|.++ ++   ++..+ +++.....-..     . .......++....+.++|+||.+++
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~-~hP~~~l~~las~rsaGk~~~~-----~-~~~~~v~~~~~~~~~~~D~vf~a~p   78 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDR-DFPYSSLKMLASARSAGKKVTF-----E-GRDYTVEELTEDSFDGVDIALFSAG   78 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhC-CCCcceEEEEEccCCCCCeeee-----c-CceeEEEeCCHHHHcCCCEEEECCC
Confidence            4478999999999999999999986 33   33333 22222211111     1 1122222333344567999999885


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029656          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ...                  ...+...+.+.++++|=.|+..=+.
T Consensus        79 ~~~------------------s~~~~~~~~~~g~~VIDlS~~fR~~  106 (344)
T PLN02383         79 GSI------------------SKKFGPIAVDKGAVVVDNSSAFRME  106 (344)
T ss_pred             cHH------------------HHHHHHHHHhCCCEEEECCchhhcC
Confidence            321                  2334445555677888777755433

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.56  E-value=0.00027  Score=56.13  Aligned_cols=76  Identities=11%  Similarity=0.093  Sum_probs=50.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCC---CCChhhhhhhhc-CCceEEEeccccccc-----cCCcCE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYF---TGSKDNLRKWIG-HPRFELIRHDVTEPL-----LIEVDQ  100 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~---~~~~~~~~~~~~-~~~~~~~~~D~~~~~-----~~~~d~  100 (190)
                      ++++++|+|+ |.+|++++..|++. |. +|.++.|+.   +...+....+.. ...+....+|+.+..     ....|+
T Consensus       125 ~~k~vlI~GA-GGagrAia~~La~~-G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di  202 (289)
T PRK12548        125 KGKKLTVIGA-GGAATAIQVQCALD-GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI  202 (289)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHC-CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence            5789999997 89999999999999 55 599999875   222222222211 123344556766532     245799


Q ss_pred             EEEccCCC
Q 029656          101 IYHLACPA  108 (190)
Q Consensus       101 vi~~ag~~  108 (190)
                      |||+-...
T Consensus       203 lINaTp~G  210 (289)
T PRK12548        203 LVNATLVG  210 (289)
T ss_pred             EEEeCCCC
Confidence            99987543

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.54  E-value=0.002  Score=53.98  Aligned_cols=111  Identities=9%  Similarity=0.057  Sum_probs=78.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhc-------CC-CeEEEEcCCCCCChhhhhhhhcCC-----ceEEEeccccccccCCcC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMEN-------EK-NEVIVVDNYFTGSKDNLRKWIGHP-----RFELIRHDVTEPLLIEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~-------~~-~~v~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~d   99 (190)
                      -+|.|+|++|.+|.+++..|+..       +- .++.+++++.+...-...++.+..     .+.+...  ..+++.+.|
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~--~ye~~kdaD  178 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGID--PYEVFQDAE  178 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecC--CHHHhCcCC
Confidence            68999999999999999999887       32 368888887766654444443221     2221111  124567899


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHH-cC--CeEEEEec
Q 029656          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR-VG--ARILLTST  147 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~-~~--~~~i~vSS  147 (190)
                      +||-.||...  ...++..+.++.|..-...+.+...+ .+  .++|.+|.
T Consensus       179 iVVitAG~pr--kpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN  227 (444)
T PLN00112        179 WALLIGAKPR--GPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN  227 (444)
T ss_pred             EEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence            9999998643  22345677899999999999999888 44  36777775

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=97.54  E-value=0.00069  Score=55.06  Aligned_cols=101  Identities=14%  Similarity=0.141  Sum_probs=56.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-------CceE-EEeccccccccCCcCEEEEc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-------PRFE-LIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-------~~~~-~~~~D~~~~~~~~~d~vi~~  104 (190)
                      ++|.|+|++|++|+++++.|..+...++..+..+.......+....+.       ..+. ...-++......++|+||.+
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a   80 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA   80 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence            479999999999999999998874457666633221111111111100       0011 01112222233578999988


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceec
Q 029656          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~  151 (190)
                      .....                  ...+...+.+.++++|..|+..=+
T Consensus        81 ~p~~~------------------s~~~~~~~~~~G~~VIDlsg~fR~  109 (341)
T TIGR00978        81 LPSEV------------------AEEVEPKLAEAGKPVFSNASNHRM  109 (341)
T ss_pred             CCHHH------------------HHHHHHHHHHCCCEEEECChhhcc
Confidence            74211                  123445666678888888876533

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.51  E-value=0.00056  Score=54.89  Aligned_cols=99  Identities=13%  Similarity=0.172  Sum_probs=59.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC----CceEEEeccccccccCCcCEEEEccCC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      +++|.|.|++|+.|..|++.|..+...++.....+.. ....+.....+    ....+...|.......++|+||.+.-.
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~-~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh   80 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRER-AGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH   80 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhh-cCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence            5789999999999999999999996666555544331 11122222111    112233333333344569999988632


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      ..                  ...++......++++|=.|..+
T Consensus        81 g~------------------s~~~v~~l~~~g~~VIDLSadf  104 (349)
T COG0002          81 GV------------------SAELVPELLEAGCKVIDLSADF  104 (349)
T ss_pred             hh------------------HHHHHHHHHhCCCeEEECCccc
Confidence            11                  2345555555677888888755

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.50  E-value=0.0027  Score=51.17  Aligned_cols=111  Identities=16%  Similarity=0.103  Sum_probs=72.7

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-C-----eEEEEcCCCCC--ChhhhhhhhcCC-----ceEEEeccccccccCCcC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-N-----EVIVVDNYFTG--SKDNLRKWIGHP-----RFELIRHDVTEPLLIEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~-----~v~~~~r~~~~--~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~d   99 (190)
                      .+|.|+|++|.+|..++..|+..+- .     ++.+++.....  ..-...++.+..     .+... .+ ...++.++|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~-~~~~~~daD   81 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-TD-PEEAFKDVD   81 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-cC-hHHHhCCCC
Confidence            5799999999999999999998732 3     68888775422  232222222111     12111 11 124566899


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--C-eEEEEec
Q 029656          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTST  147 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~-~~i~vSS  147 (190)
                      +||..||...  ...++..+.+..|..-...+.+.++++.  . .+|.+|.
T Consensus        82 vVVitAG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN  130 (323)
T TIGR01759        82 AALLVGAFPR--KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN  130 (323)
T ss_pred             EEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence            9999998643  2335667789999999999998887764  3 5666654

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=97.49  E-value=6.4e-05  Score=61.98  Aligned_cols=70  Identities=20%  Similarity=0.269  Sum_probs=48.1

Q ss_pred             cCCCEEEEEcc----------------cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc
Q 029656           30 QSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP   93 (190)
Q Consensus        30 ~~~~~vlItG~----------------~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~   93 (190)
                      +++++++||||                +|.+|.++++.|..+ |++|+++.+......        ...+.  ..|+.+.
T Consensus       183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~-Ga~V~~~~g~~~~~~--------~~~~~--~~~v~~~  251 (390)
T TIGR00521       183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKR-GADVTLITGPVSLLT--------PPGVK--SIKVSTA  251 (390)
T ss_pred             cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHC-CCEEEEeCCCCccCC--------CCCcE--EEEeccH
Confidence            57899999998                367999999999999 899988876433211        11222  2233321


Q ss_pred             ----------ccCCcCEEEEccCCCCC
Q 029656           94 ----------LLIEVDQIYHLACPASP  110 (190)
Q Consensus        94 ----------~~~~~d~vi~~ag~~~~  110 (190)
                                ...++|++|++||+.+.
T Consensus       252 ~~~~~~~~~~~~~~~D~~i~~Aavsd~  278 (390)
T TIGR00521       252 EEMLEAALNELAKDFDIFISAAAVADF  278 (390)
T ss_pred             HHHHHHHHHhhcccCCEEEEccccccc
Confidence                      12358999999997653

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.48  E-value=0.0018  Score=53.31  Aligned_cols=111  Identities=12%  Similarity=0.077  Sum_probs=73.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCe----EEE----EcCCCCCChhhhhhhhcC-----CceEEEeccccccccCCcC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNE----VIV----VDNYFTGSKDNLRKWIGH-----PRFELIRHDVTEPLLIEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~----v~~----~~r~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~d   99 (190)
                      -+|.|+|++|.+|..++..|+..+-..    +.+    ++++.+.......++.+.     ..+.....|  ..++.+.|
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~--y~~~kdaD  122 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDP--YEVFEDAD  122 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCC--HHHhCCCC
Confidence            689999999999999999999884322    333    355555444333333221     122222111  24567899


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC---CeEEEEec
Q 029656          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTST  147 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~vSS  147 (190)
                      +||..||...  ...++..+.+..|..-...+.+...++.   .++|.+|.
T Consensus       123 IVVitAG~pr--kpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN  171 (387)
T TIGR01757       123 WALLIGAKPR--GPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN  171 (387)
T ss_pred             EEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence            9999998643  2334567789999999999999888743   36777775

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.47  E-value=0.0016  Score=52.92  Aligned_cols=106  Identities=24%  Similarity=0.286  Sum_probs=68.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh------------------------hhhhhhhcCCceEE
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK------------------------DNLRKWIGHPRFEL   85 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~------------------------~~~~~~~~~~~~~~   85 (190)
                      +...+|+|.| .|.+|..+++.|+..|-.++.+++++.-...                        ..+..+-+...+..
T Consensus        22 L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~  100 (339)
T PRK07688         22 LREKHVLIIG-AGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA  100 (339)
T ss_pred             hcCCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence            3668999999 6999999999999994458888887531110                        11111112234555


Q ss_pred             Eecccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCC
Q 029656           86 IRHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD  153 (190)
Q Consensus        86 ~~~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~  153 (190)
                      +..+++..    .+.+.|+||.+..         ++        ..-..+-++|.+.++.+|+.++.+.||.
T Consensus       101 ~~~~~~~~~~~~~~~~~DlVid~~D---------n~--------~~r~~ln~~~~~~~iP~i~~~~~g~~G~  155 (339)
T PRK07688        101 IVQDVTAEELEELVTGVDLIIDATD---------NF--------ETRFIVNDAAQKYGIPWIYGACVGSYGL  155 (339)
T ss_pred             EeccCCHHHHHHHHcCCCEEEEcCC---------CH--------HHHHHHHHHHHHhCCCEEEEeeeeeeeE
Confidence            55555432    2356899988852         11        1123466788888889999888776663

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.46  E-value=0.0017  Score=45.46  Aligned_cols=103  Identities=21%  Similarity=0.344  Sum_probs=64.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEecc
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIRHD   89 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~D   89 (190)
                      .++|+|.| .|.+|..+++.|+..|-.++.+++...-...+.                      +..+.+..++..+..+
T Consensus         2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            47899999 899999999999999445788876653222111                      1111122455666666


Q ss_pred             cccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029656           90 VTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        90 ~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      +...    .+.++|+||.+...                 ...-..+.+.|+++++++|..+..+.+|
T Consensus        81 ~~~~~~~~~~~~~d~vi~~~d~-----------------~~~~~~l~~~~~~~~~p~i~~~~~g~~G  130 (135)
T PF00899_consen   81 IDEENIEELLKDYDIVIDCVDS-----------------LAARLLLNEICREYGIPFIDAGVNGFYG  130 (135)
T ss_dssp             CSHHHHHHHHHTSSEEEEESSS-----------------HHHHHHHHHHHHHTT-EEEEEEEETTEE
T ss_pred             cccccccccccCCCEEEEecCC-----------------HHHHHHHHHHHHHcCCCEEEEEeecCEE
Confidence            6322    23479999998631                 1112356778999998998888755444

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>KOG4288 consensus Predicted oxidoreductase [General function prediction only]

Probab=97.45  E-value=0.00041  Score=52.61  Aligned_cols=106  Identities=19%  Similarity=0.241  Sum_probs=76.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEE-----EeccccccccCCcCEEEEcc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL-----IRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~-----~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +-...++.|+.||.|+++++..... ++.|..+.|+..  ++.+..+.  ..+.|     +..|+.+....++.-++-++
T Consensus        51 e~e~tlvlggnpfsgs~vlk~A~~v-v~svgilsen~~--k~~l~sw~--~~vswh~gnsfssn~~k~~l~g~t~v~e~~  125 (283)
T KOG4288|consen   51 EVEWTLVLGGNPFSGSEVLKNATNV-VHSVGILSENEN--KQTLSSWP--TYVSWHRGNSFSSNPNKLKLSGPTFVYEMM  125 (283)
T ss_pred             hHHHHhhhcCCCcchHHHHHHHHhh-ceeeeEeecccC--cchhhCCC--cccchhhccccccCcchhhhcCCcccHHHh
Confidence            3356889999999999999999999 899988888644  22233332  23444     44455556666788888887


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC-eEEEEec
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST  147 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~i~vSS  147 (190)
                      |...      +...+..+|-....+..+++++.++ +++|+|.
T Consensus       126 ggfg------n~~~m~~ing~ani~a~kaa~~~gv~~fvyISa  162 (283)
T KOG4288|consen  126 GGFG------NIILMDRINGTANINAVKAAAKAGVPRFVYISA  162 (283)
T ss_pred             cCcc------chHHHHHhccHhhHHHHHHHHHcCCceEEEEEh
Confidence            6432      4455667788888888999999998 8999996

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.45  E-value=0.0037  Score=49.99  Aligned_cols=111  Identities=13%  Similarity=0.071  Sum_probs=69.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-----CceEEEe-ccccccccCCcCEEEEcc
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIR-HDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~-~D~~~~~~~~~d~vi~~a  105 (190)
                      +++|.|+|+ |.+|..++..++..+..+|.+++++.+.......++...     ....... .|.  .++.+.|+||.++
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~--~~~~~aDiVii~~   78 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY--EDIAGSDVVVITA   78 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH--HHHCCCCEEEECC
Confidence            478999996 999999999999873128999988665443322222111     1112211 233  3467899999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      |...  .......+.+..|+.....+++...+...  .+|.++.
T Consensus        79 ~~p~--~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN  120 (307)
T PRK06223         79 GVPR--KPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN  120 (307)
T ss_pred             CCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            8543  22234455667788777777777766542  4555554

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.45  E-value=0.0039  Score=49.96  Aligned_cols=110  Identities=15%  Similarity=0.168  Sum_probs=71.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC----CceEEEeccccccccCCcCEEEEccCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      |+|.|.|+ |.+|..++..|+.++. .++.+++++.........++.+.    ........|.  ....+.|+||.+++.
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~--~~l~~aDiViita~~   77 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY--ADCKGADVVVITAGA   77 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH--HHhCCCCEEEEccCC
Confidence            57999995 9999999999999832 68999998765443222222211    1122222333  346789999999985


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ...  ...+..+.+..|......+++.+.+.+.  .++.++.
T Consensus        78 ~~~--~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tN  117 (308)
T cd05292          78 NQK--PGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTN  117 (308)
T ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            432  2334556778888888888887776653  4555543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.44  E-value=0.0031  Score=50.64  Aligned_cols=110  Identities=16%  Similarity=0.045  Sum_probs=71.7

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCC-ceEEEe--cc-ccccccCCcCEEEEccCCC
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHP-RFELIR--HD-VTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~--~D-~~~~~~~~~d~vi~~ag~~  108 (190)
                      ||.|+|++|.+|..++..|+..+- .++.+++++.  ..-...++.+.. ......  .| -..+++.+.|+||.+||..
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~   78 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVP   78 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCC
Confidence            588999999999999999988732 4788887755  221112222111 112221  11 1124677899999999864


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029656          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ..  ......+.+..|..-...+.+...+++-  .+|.+|.
T Consensus        79 ~~--~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN  117 (312)
T TIGR01772        79 RK--PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN  117 (312)
T ss_pred             CC--CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            32  2345667789999988888888877653  5666665

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.44  E-value=0.0021  Score=48.37  Aligned_cols=105  Identities=18%  Similarity=0.216  Sum_probs=65.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh----------------------hhhhhhcCCceEEEe
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~   87 (190)
                      +...+|+|.| .|.+|.++++.|+..+-.++.+++.+.-...+                      .+..+-+..++..+.
T Consensus        19 l~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~   97 (202)
T TIGR02356        19 LLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK   97 (202)
T ss_pred             hcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence            3678999999 89999999999999943688888776321111                      111111222344443


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029656           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ..+...    .+.++|+||.+...         .        ..-..+-+.|.++++.+|+.+..+.+|
T Consensus        98 ~~i~~~~~~~~~~~~D~Vi~~~d~---------~--------~~r~~l~~~~~~~~ip~i~~~~~g~~G  149 (202)
T TIGR02356        98 ERVTAENLELLINNVDLVLDCTDN---------F--------ATRYLINDACVALGTPLISAAVVGFGG  149 (202)
T ss_pred             hcCCHHHHHHHHhCCCEEEECCCC---------H--------HHHHHHHHHHHHcCCCEEEEEeccCeE
Confidence            344322    24568999888631         1        112346678888888898888655444

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=97.41  E-value=0.0013  Score=49.88  Aligned_cols=79  Identities=19%  Similarity=0.114  Sum_probs=58.2

Q ss_pred             ccCCCEEEEEccc--chHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEEecccccccc----------
Q 029656           29 FQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPLL----------   95 (190)
Q Consensus        29 ~~~~~~vlItG~~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~----------   95 (190)
                      +++||+++|+|-.  ..|+..+++.|.++ |.++......+ .....+.++... .....+.||+.+++.          
T Consensus         3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~-GAeL~fTy~~e-~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~   80 (259)
T COG0623           3 LLEGKRILIMGVANNRSIAWGIAKALAEQ-GAELAFTYQGE-RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKK   80 (259)
T ss_pred             ccCCceEEEEEecccccHHHHHHHHHHHc-CCEEEEEeccH-HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHH
Confidence            4689999999864  67999999999999 88888777654 334444444322 234568899998743          


Q ss_pred             --CCcCEEEEccCCCC
Q 029656           96 --IEVDQIYHLACPAS  109 (190)
Q Consensus        96 --~~~d~vi~~ag~~~  109 (190)
                        .++|.|+|+.+...
T Consensus        81 ~~g~lD~lVHsIaFa~   96 (259)
T COG0623          81 KWGKLDGLVHSIAFAP   96 (259)
T ss_pred             hhCcccEEEEEeccCC
Confidence              35999999998654

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=97.41  E-value=0.00049  Score=55.85  Aligned_cols=68  Identities=13%  Similarity=0.222  Sum_probs=42.8

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCe---EEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNE---VIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~---v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      +|+|.|++|++|+.+++.|.++ ++.   +..+.+...... .+. +   ........|+....+.++|+||.++|.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~-~hp~~~l~~~as~~~~g~-~~~-~---~~~~~~~~~~~~~~~~~~D~v~~a~g~   71 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEER-NFPIDKLVLLASDRSAGR-KVT-F---KGKELEVNEAKIESFEGIDIALFSAGG   71 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhC-CCChhhEEEEeccccCCC-eee-e---CCeeEEEEeCChHHhcCCCEEEECCCH
Confidence            5899999999999999999886 444   333334322111 111 1   123444455554556789999999863

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.39  E-value=0.0053  Score=49.17  Aligned_cols=109  Identities=17%  Similarity=0.195  Sum_probs=74.2

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC------CceEEEeccccccccCCcCEEEEccC
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH------PRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      ||.|.|+ |.+|..++..|+.++- .++.+++...+.......++.+.      ..+.....|  -+++.+.|+||-.||
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~--y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD--YDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC--HHHhCCCCEEEECCC
Confidence            5789996 9999999999998743 47888888655554443333221      133444333  245678999999998


Q ss_pred             CCCCcccccC--chhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029656          107 PASPIFYKYN--PVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       107 ~~~~~~~~~~--~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ....  ..+.  ..+.++.|..-...+.+.+.+++-  .+|.+|-
T Consensus        78 ~~~k--pg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN  120 (307)
T cd05290          78 PSID--PGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN  120 (307)
T ss_pred             CCCC--CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence            6432  1222  367789999999999988887763  5555555

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.39  E-value=0.0042  Score=49.87  Aligned_cols=111  Identities=13%  Similarity=0.089  Sum_probs=73.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCC----ceEEEe-ccccccccCCcCEEEEcc
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHP----RFELIR-HDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~-~D~~~~~~~~~d~vi~~a  105 (190)
                      .+||.|+|+ |.+|..++..|+..+- .++.+++.+.+.......++.+..    ...... .|.  +++.+.|+||.+|
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy--~~~~~adivvita   79 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDY--SVTANSKVVIVTA   79 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCH--HHhCCCCEEEECC
Confidence            368999995 9999999999988843 478888876654443333332211    112222 333  2467899999999


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      |....  ..+...+.+..|..-...+.+..++++-  .+|.+|.
T Consensus        80 G~~~k--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN  121 (312)
T cd05293          80 GARQN--EGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN  121 (312)
T ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence            86432  2345667788899988888888877752  5666664

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=97.39  E-value=0.0033  Score=49.74  Aligned_cols=105  Identities=14%  Similarity=0.207  Sum_probs=70.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh----------------------hhhhhhcCCceEEEec
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRFELIRH   88 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~~   88 (190)
                      ...+|+|.| .|.+|.++++.|+..|-..+.+++...-...+                      .+.++-+..+++.+..
T Consensus        18 ~~s~VLIvG-~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~   96 (286)
T cd01491          18 QKSNVLISG-LGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTG   96 (286)
T ss_pred             hcCcEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence            568899999 89999999999999954678887655322211                      1122222345666655


Q ss_pred             cccccccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCC
Q 029656           89 DVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD  153 (190)
Q Consensus        89 D~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~  153 (190)
                      ++..+.+.++|+||.+..         +.+        ....+-++|+++++.+|...+.+.+|.
T Consensus        97 ~~~~~~l~~fdvVV~~~~---------~~~--------~~~~in~~c~~~~ipfI~a~~~G~~G~  144 (286)
T cd01491          97 PLTTDELLKFQVVVLTDA---------SLE--------DQLKINEFCHSPGIKFISADTRGLFGS  144 (286)
T ss_pred             cCCHHHHhcCCEEEEecC---------CHH--------HHHHHHHHHHHcCCEEEEEeccccEEE
Confidence            555555678999888752         111        123456788888889999988776663

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.38  E-value=0.0045  Score=43.71  Aligned_cols=100  Identities=15%  Similarity=0.164  Sum_probs=62.8

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEecccc
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIRHDVT   91 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~D~~   91 (190)
                      +|+|.| .|.+|.++++.|+..+-.++.+++...-...+.                      +..+.+..++..+..++.
T Consensus         1 ~VliiG-~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~   79 (143)
T cd01483           1 RVLLVG-LGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS   79 (143)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence            488999 699999999999999445788886552211111                      111112234444444444


Q ss_pred             cc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceec
Q 029656           92 EP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (190)
Q Consensus        92 ~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~  151 (190)
                      ..    .+.++|+||.+...                 ......+.+.|+++++.+|.+++.+.+
T Consensus        80 ~~~~~~~~~~~diVi~~~d~-----------------~~~~~~l~~~~~~~~i~~i~~~~~g~~  126 (143)
T cd01483          80 EDNLDDFLDGVDLVIDAIDN-----------------IAVRRALNRACKELGIPVIDAGGLGLG  126 (143)
T ss_pred             hhhHHHHhcCCCEEEECCCC-----------------HHHHHHHHHHHHHcCCCEEEEcCCCcE
Confidence            32    24579999988731                 112345778899998889988875533

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK05442 malate dehydrogenase; Provisional

Probab=97.37  E-value=0.004  Score=50.30  Aligned_cols=113  Identities=12%  Similarity=0.067  Sum_probs=73.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-C-----eEEEEcCCCCC--ChhhhhhhhcC-----CceEEEeccccccccCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEK-N-----EVIVVDNYFTG--SKDNLRKWIGH-----PRFELIRHDVTEPLLIE   97 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~-----~v~~~~r~~~~--~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~   97 (190)
                      +.++|.|+|++|.+|..++..|+..+- .     ++.+++.....  ......++.+.     ..+.....|  .+++.+
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~--y~~~~d   80 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDP--NVAFKD   80 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecCh--HHHhCC
Confidence            347899999999999999999988632 2     68888774322  22111111111     122222111  245668


Q ss_pred             cCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--C-eEEEEec
Q 029656           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--A-RILLTST  147 (190)
Q Consensus        98 ~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~-~~i~vSS  147 (190)
                      .|+||-+||...  ...++..+.+..|..-...+.+...++.  . .+|.+|.
T Consensus        81 aDiVVitaG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN  131 (326)
T PRK05442         81 ADVALLVGARPR--GPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN  131 (326)
T ss_pred             CCEEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            999999998543  2234667789999999999998888743  2 6666665

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=97.36  E-value=0.0019  Score=52.26  Aligned_cols=97  Identities=18%  Similarity=0.203  Sum_probs=58.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhc--CCCeEEEEcCC-CCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~--~~~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      ..++|.|.||||++|..+++.|.++  ...++..+... .....  +. +. ...+.+.  ++....+.++|++|.+++.
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~--~~-~~-~~~~~v~--~~~~~~~~~~Dvvf~a~p~   76 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGET--LR-FG-GKSVTVQ--DAAEFDWSQAQLAFFVAGR   76 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCce--EE-EC-CcceEEE--eCchhhccCCCEEEECCCH
Confidence            4578999999999999999999994  34455555332 22211  11 11 1122222  4333334679999998852


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceec
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~  151 (190)
                      ..                  ...++..+.+.++++|=.|+.+=+
T Consensus        77 ~~------------------s~~~~~~~~~~g~~VIDlS~~fRl  102 (336)
T PRK08040         77 EA------------------SAAYAEEATNAGCLVIDSSGLFAL  102 (336)
T ss_pred             HH------------------HHHHHHHHHHCCCEEEECChHhcC
Confidence            21                  234555666667788877775533

>PLN02602 lactate dehydrogenase

Probab=97.36  E-value=0.0059  Score=49.78  Aligned_cols=110  Identities=15%  Similarity=0.193  Sum_probs=74.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC----CceEEEe-ccccccccCCcCEEEEccC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIR-HDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~-~D~~~~~~~~~d~vi~~ag  106 (190)
                      ++|.|+| +|.+|..++..|+..+- .++.+++.+.+.......++.+.    ....... .|.  .++.+.|+||-+||
T Consensus        38 ~KI~IIG-aG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy--~~~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVG-VGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY--AVTAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH--HHhCCCCEEEECCC
Confidence            6999999 59999999999998843 47888888665544333333221    1122221 232  33678999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029656          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ....  ..++..+.+..|..-...+.+...+++-  .+|.+|-
T Consensus       115 ~~~k--~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN  155 (350)
T PLN02602        115 ARQI--PGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN  155 (350)
T ss_pred             CCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            6432  2345567788899888888888877653  5666664

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=97.34  E-value=0.00097  Score=49.43  Aligned_cols=70  Identities=24%  Similarity=0.366  Sum_probs=42.2

Q ss_pred             CCCEEEEEcc----------------cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc-
Q 029656           31 SNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-   93 (190)
Q Consensus        31 ~~~~vlItG~----------------~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-   93 (190)
                      .|++|+||+|                +|-.|.++++.+..+ |++|+++........        ...+..+..+-.++ 
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~-Ga~V~li~g~~~~~~--------p~~~~~i~v~sa~em   72 (185)
T PF04127_consen    2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARR-GAEVTLIHGPSSLPP--------PPGVKVIRVESAEEM   72 (185)
T ss_dssp             TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHT-T-EEEEEE-TTS------------TTEEEEE-SSHHHH
T ss_pred             CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHC-CCEEEEEecCccccc--------cccceEEEecchhhh
Confidence            5677777764                799999999999999 899988876532111        22555655433322 


Q ss_pred             ------ccCCcCEEEEccCCCC
Q 029656           94 ------LLIEVDQIYHLACPAS  109 (190)
Q Consensus        94 ------~~~~~d~vi~~ag~~~  109 (190)
                            .+.+.|++|++|++.+
T Consensus        73 ~~~~~~~~~~~Di~I~aAAVsD   94 (185)
T PF04127_consen   73 LEAVKELLPSADIIIMAAAVSD   94 (185)
T ss_dssp             HHHHHHHGGGGSEEEE-SB--S
T ss_pred             hhhhccccCcceeEEEecchhh
Confidence                  2346899999998765

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=97.30  E-value=0.0048  Score=46.27  Aligned_cols=106  Identities=15%  Similarity=0.266  Sum_probs=65.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh------------------------hhhhhhcCCceEE
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD------------------------NLRKWIGHPRFEL   85 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~------------------------~~~~~~~~~~~~~   85 (190)
                      ++..+|+|.| .|.+|.++++.|+..|-.++++++.+.-...+                        .+.++-+..+++.
T Consensus        17 L~~s~VlviG-~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~   95 (198)
T cd01485          17 LRSAKVLIIG-AGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI   95 (198)
T ss_pred             HhhCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence            3668999999 55599999999999954678888655221111                        0112222234555


Q ss_pred             Eeccccc------cccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCC
Q 029656           86 IRHDVTE------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD  153 (190)
Q Consensus        86 ~~~D~~~------~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~  153 (190)
                      +..++.+      ..+.++|+||.+-.         +        ......+-+.|+++++.+|+.++.+.||.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~dvVi~~~d---------~--------~~~~~~ln~~c~~~~ip~i~~~~~G~~G~  152 (198)
T cd01485          96 VEEDSLSNDSNIEEYLQKFTLVIATEE---------N--------YERTAKVNDVCRKHHIPFISCATYGLIGY  152 (198)
T ss_pred             EecccccchhhHHHHHhCCCEEEECCC---------C--------HHHHHHHHHHHHHcCCCEEEEEeecCEEE
Confidence            4444431      12346888887642         1        11123466889999999999998776664

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.29  E-value=0.004  Score=52.85  Aligned_cols=76  Identities=20%  Similarity=0.133  Sum_probs=50.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      ..+++|+|+| .|.+|..+++.|.++ |.+|+++++++..............++.+...+-.. ....+|.||...|..
T Consensus        14 ~~~~~v~viG-~G~~G~~~A~~L~~~-G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~~~D~Vv~s~Gi~   89 (480)
T PRK01438         14 WQGLRVVVAG-LGVSGFAAADALLEL-GARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-LPEDTDLVVTSPGWR   89 (480)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccCCCCEEEECCCcC
Confidence            4678999999 688999999999998 889999986543322222222222345554433222 345689999988854

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=97.28  E-value=0.0052  Score=46.01  Aligned_cols=106  Identities=16%  Similarity=0.299  Sum_probs=65.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh----------------------hhhhhhcCCceEEEe
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~   87 (190)
                      +.+.+|+|.| .|.+|.++++.|+..|-.++.+++...-...+                      .+.++-+...++...
T Consensus        19 L~~s~VlIiG-~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~   97 (197)
T cd01492          19 LRSARILLIG-LKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT   97 (197)
T ss_pred             HHhCcEEEEc-CCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence            3678999999 55599999999999944678887654221111                      112222223444444


Q ss_pred             ccccc---cccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCC
Q 029656           88 HDVTE---PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD  153 (190)
Q Consensus        88 ~D~~~---~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~  153 (190)
                      ..+.+   ..+.++|+||.+..         +..        ....+-+.|+++++.+|+.++.+.+|.
T Consensus        98 ~~~~~~~~~~~~~~dvVi~~~~---------~~~--------~~~~ln~~c~~~~ip~i~~~~~G~~G~  149 (197)
T cd01492          98 DDISEKPEEFFSQFDVVVATEL---------SRA--------ELVKINELCRKLGVKFYATGVHGLFGF  149 (197)
T ss_pred             cCccccHHHHHhCCCEEEECCC---------CHH--------HHHHHHHHHHHcCCCEEEEEecCCEEE
Confidence            33332   12357899887752         111        123455788999999999888776663

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.27  E-value=0.0045  Score=42.47  Aligned_cols=70  Identities=16%  Similarity=0.316  Sum_probs=40.9

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEE-cCCCCCChhhhhhhhcCCceE-EE--eccccccccCCcCEEEEccC
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIGHPRFE-LI--RHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~~~~~~-~~--~~D~~~~~~~~~d~vi~~ag  106 (190)
                      ++.|+|++|.+|..+++.|.+..+.++..+ .++ ...........  +++. ..  ..+..+....++|+||.+.+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~DvV~~~~~   74 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASA-RSAGKRVSEAG--PHLKGEVVLELEPEDFEELAVDIVFLALP   74 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEech-hhcCcCHHHHC--cccccccccccccCChhhcCCCEEEEcCC
Confidence            478999999999999999999756677666 332 21112222211  1111 11  12222222347899988874

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.26  E-value=0.0011  Score=52.39  Aligned_cols=75  Identities=17%  Similarity=0.255  Sum_probs=49.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      ..+++++|+|+ |.+|+.++..|... + .+|+++.|+.+........+.....+.+ ..+. .....+.|+|||+....
T Consensus       121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~-g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~~~-~~~~~~~DivInaTp~g  196 (278)
T PRK00258        121 LKGKRILILGA-GGAARAVILPLLDL-GVAEITIVNRTVERAEELAKLFGALGKAEL-DLEL-QEELADFDLIINATSAG  196 (278)
T ss_pred             CCCCEEEEEcC-cHHHHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHhhhccceee-cccc-hhccccCCEEEECCcCC
Confidence            46789999994 99999999999998 6 7999999975544333222211111222 1121 13345789999998644

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.24  E-value=0.003  Score=47.50  Aligned_cols=71  Identities=14%  Similarity=0.283  Sum_probs=52.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.+++|+|.| +|-+|...++.|++. |++|+++.+..   ...+..+.....+.+..-++....+.+.|+||-+.
T Consensus         8 l~~k~vLVIG-gG~va~~ka~~Ll~~-ga~V~VIs~~~---~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT   78 (202)
T PRK06718          8 LSNKRVVIVG-GGKVAGRRAITLLKY-GAHIVVISPEL---TENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAAT   78 (202)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHC-CCeEEEEcCCC---CHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcC
Confidence            5789999999 699999999999999 78999887532   22233444445677766666666667888887765

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.24  E-value=0.0034  Score=48.98  Aligned_cols=32  Identities=22%  Similarity=0.499  Sum_probs=26.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~   64 (190)
                      ++|.|+|++|.+|+.+++.+.+..+.++..+.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~   33 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAV   33 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            68999999999999999998876456666543

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.23  E-value=0.0012  Score=51.85  Aligned_cols=74  Identities=18%  Similarity=0.269  Sum_probs=49.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      .+++++|+|+ |.+|+.++..|++. +.+|.+..|+.+........+.....+...  +..+....++|+||++.+..
T Consensus       116 ~~k~vliiGa-Gg~g~aia~~L~~~-g~~v~v~~R~~~~~~~la~~~~~~~~~~~~--~~~~~~~~~~DivInatp~g  189 (270)
T TIGR00507       116 PNQRVLIIGA-GGAARAVALPLLKA-DCNVIIANRTVSKAEELAERFQRYGEIQAF--SMDELPLHRVDLIINATSAG  189 (270)
T ss_pred             cCCEEEEEcC-cHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHhhcCceEEe--chhhhcccCccEEEECCCCC
Confidence            4689999996 89999999999998 789999988654433332222111222222  22223334689999998754

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.22  E-value=0.0054  Score=47.96  Aligned_cols=110  Identities=16%  Similarity=0.094  Sum_probs=71.6

Q ss_pred             EEEEcccchHHHHHHHHHHhcCC----CeEEEEcCCCCCChhhhhhhhc---CC-ceEEEeccccccccCCcCEEEEccC
Q 029656           35 ILVTGGAGFIGSHLVDKLMENEK----NEVIVVDNYFTGSKDNLRKWIG---HP-RFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~----~~v~~~~r~~~~~~~~~~~~~~---~~-~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      |.|+|++|.+|..++..|+.. +    .++.+++++.+.......++..   .. .......+-..+++.+.|+||..+|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~-~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADG-SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhC-CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCC
Confidence            479999899999999999988 5    6899998876554433322211   11 1222222211355678999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029656          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ....  ...........|+.....+.+...+...  .+|.+|-
T Consensus        80 ~~~~--~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tN  120 (263)
T cd00650          80 VGRK--PGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN  120 (263)
T ss_pred             CCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            5432  2234445677788888888888877653  5666654

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=97.21  E-value=0.0066  Score=48.46  Aligned_cols=108  Identities=19%  Similarity=0.177  Sum_probs=72.0

Q ss_pred             EEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC----CceEEEe-ccccccccCCcCEEEEccCCC
Q 029656           35 ILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIR-HDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~-~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      |.|.| +|.+|..++..|+..+- .++.+++++.+.......++.+.    ....... .|  ..++.++|+||.++|..
T Consensus         1 i~iiG-aG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~--~~~l~~aDiVIitag~p   77 (300)
T cd00300           1 ITIIG-AGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD--YADAADADIVVITAGAP   77 (300)
T ss_pred             CEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC--HHHhCCCCEEEEcCCCC
Confidence            46888 58999999999998832 68999988765544333333211    1122222 22  24667899999999854


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029656          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ..  ..++..+.+..|+.-...+.+..+++.-  .+|.+|.
T Consensus        78 ~~--~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN  116 (300)
T cd00300          78 RK--PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN  116 (300)
T ss_pred             CC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            32  2345567788899999989888877753  6666665

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=97.20  E-value=0.0023  Score=51.30  Aligned_cols=83  Identities=16%  Similarity=0.206  Sum_probs=52.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCCc
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI  111 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~~  111 (190)
                      +.+|.|.|++|++|..+++.|.++..-++..+..+...            ..     +..+....++|+||.+....   
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~------------~~-----~~~~~~~~~~DvvFlalp~~---   61 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK------------DA-----AARRELLNAADVAILCLPDD---   61 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC------------cc-----cCchhhhcCCCEEEECCCHH---
Confidence            46899999999999999999999854455555432211            00     11112234689998887321   


Q ss_pred             ccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029656          112 FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       112 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                                     ....+...+.+.++++|=.|+..
T Consensus        62 ---------------~s~~~~~~~~~~g~~VIDlSadf   84 (313)
T PRK11863         62 ---------------AAREAVALIDNPATRVIDASTAH   84 (313)
T ss_pred             ---------------HHHHHHHHHHhCCCEEEECChhh
Confidence                           02334455555677888788755

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.19  E-value=0.0041  Score=47.61  Aligned_cols=105  Identities=18%  Similarity=0.180  Sum_probs=64.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +.+.+|+|.| .|.+|.++++.|+..|-.++.+++.+.-...+.                      +..+-+..++..+.
T Consensus        19 L~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~   97 (228)
T cd00757          19 LKNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN   97 (228)
T ss_pred             HhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence            3668999999 899999999999999446777775542111111                      11111123445554


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029656           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      .++...    .+.++|+||.+...         +.        .-..+-+.|.++++.+|+.+..+.+|
T Consensus        98 ~~i~~~~~~~~~~~~DvVi~~~d~---------~~--------~r~~l~~~~~~~~ip~i~~g~~g~~g  149 (228)
T cd00757          98 ERLDAENAEELIAGYDLVLDCTDN---------FA--------TRYLINDACVKLGKPLVSGAVLGFEG  149 (228)
T ss_pred             ceeCHHHHHHHHhCCCEEEEcCCC---------HH--------HHHHHHHHHHHcCCCEEEEEeccCEE
Confidence            444321    23469999998731         11        12346678888888888887655433

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.19  E-value=0.0059  Score=48.90  Aligned_cols=110  Identities=15%  Similarity=0.107  Sum_probs=70.7

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-----CceEEE-eccccccccCCcCEEEEccC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELI-RHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~-~~D~~~~~~~~~d~vi~~ag  106 (190)
                      |+|.|.| +|++|..++..|+.++..+|.+++............+...     ...... ..|..  +..++|+||-++|
T Consensus         2 ~KV~VIG-aG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~--~~~~aDiVIitag   78 (305)
T TIGR01763         2 KKISVIG-AGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYA--DTANSDIVVITAG   78 (305)
T ss_pred             CEEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHH--HhCCCCEEEEcCC
Confidence            6799999 5999999999999983237999888544333222212111     011121 23443  2567999999998


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029656          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ....  ...+..+.+..|......+++...++.-  .+|.+|.
T Consensus        79 ~p~~--~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN  119 (305)
T TIGR01763        79 LPRK--PGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN  119 (305)
T ss_pred             CCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            5332  2234556778899988888888777653  5666665

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=97.17  E-value=0.0063  Score=47.17  Aligned_cols=94  Identities=20%  Similarity=0.257  Sum_probs=54.7

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCe-EEEEcCCCCCCh-hhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNE-VIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~-v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      +++|.|.|++|-.|+.+++.+.+..+.+ +-++.|...... ....++.....+.....|-.......+|++|.+-.+. 
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P~-   80 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTPE-   80 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCch-
Confidence            5789999999999999999999986555 444555433221 1111111111111111121333456789999886421 


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCCeEE
Q 029656          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL  143 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i  143 (190)
                                       ++..+++.|.++++++|
T Consensus        81 -----------------~~~~~l~~~~~~~~~lV   97 (266)
T COG0289          81 -----------------ATLENLEFALEHGKPLV   97 (266)
T ss_pred             -----------------hhHHHHHHHHHcCCCeE
Confidence                             13456777777775554

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.17  E-value=0.0082  Score=48.38  Aligned_cols=112  Identities=11%  Similarity=0.095  Sum_probs=70.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-----CceEEEe-ccccccccCCcCEEEEc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELIR-HDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~-~D~~~~~~~~~d~vi~~  104 (190)
                      ..++|.|+|+ |.+|..++..|+..+-.++.+++++.+.......++...     ....... .|.  +++.+.|+||.+
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~--~~l~~ADiVVit   80 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY--EDIKDSDVVVIT   80 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH--HHhCCCCEEEEC
Confidence            4579999995 999999999998883268888888665433221111111     1122221 232  256789999999


Q ss_pred             cCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029656          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       105 ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      +|....  ......+.+..|..-...+.+.+.+..-  .+|++|.
T Consensus        81 ag~~~~--~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN  123 (319)
T PTZ00117         81 AGVQRK--EEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN  123 (319)
T ss_pred             CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            986432  2234456677788777777777766642  4666654

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.17  E-value=0.0035  Score=50.90  Aligned_cols=97  Identities=14%  Similarity=0.215  Sum_probs=57.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCe---EEEEc-CCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNE---VIVVD-NYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~---v~~~~-r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      ..++|.|.|+||++|+.+++.|.++....   +..+. ++.....-   .+. ...+.+...|.  ..+.++|++|.+++
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~---~~~-~~~l~v~~~~~--~~~~~~Divf~a~~   77 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTV---QFK-GREIIIQEAKI--NSFEGVDIAFFSAG   77 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCe---eeC-CcceEEEeCCH--HHhcCCCEEEECCC
Confidence            34689999999999999999999764545   44443 22222211   111 11333333332  33467999999885


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceec
Q 029656          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~  151 (190)
                      ...                  ...+...+.+.++.+|=.||..=+
T Consensus        78 ~~~------------------s~~~~~~~~~~G~~VID~Ss~fR~  104 (347)
T PRK06728         78 GEV------------------SRQFVNQAVSSGAIVIDNTSEYRM  104 (347)
T ss_pred             hHH------------------HHHHHHHHHHCCCEEEECchhhcC
Confidence            221                  234555566667777777765544

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.16  E-value=0.019  Score=46.33  Aligned_cols=114  Identities=11%  Similarity=0.052  Sum_probs=70.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-----CCceEEEe-ccccccccCCcCEEEEc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-----HPRFELIR-HDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~-~D~~~~~~~~~d~vi~~  104 (190)
                      +.++|.|+| +|.+|..++..++..+-.++.+++.+++.......++..     ........ .|.  +++.+.|+||.+
T Consensus         5 ~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~--~~l~~aDiVI~t   81 (321)
T PTZ00082          5 KRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY--EDIAGSDVVIVT   81 (321)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH--HHhCCCCEEEEC
Confidence            457899999 699999999999888335788888866543222111111     11223322 343  356789999999


Q ss_pred             cCCCCCccc---ccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029656          105 ACPASPIFY---KYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       105 ag~~~~~~~---~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      +|.......   +.+..+.+..|..-...+.+.+.+..-  .+|.+|.
T Consensus        82 ag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN  129 (321)
T PTZ00082         82 AGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN  129 (321)
T ss_pred             CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            986432111   013455677787777777777766542  5666655

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=97.13  E-value=0.011  Score=45.76  Aligned_cols=105  Identities=14%  Similarity=0.120  Sum_probs=64.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +.+.+|+|.| .|.+|..+++.|+..|-.++.+++.+.-...+.                      +.++-+..++..+.
T Consensus        22 L~~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~  100 (240)
T TIGR02355        22 LKASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN  100 (240)
T ss_pred             HhCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            3668999999 899999999999999546788876653332211                      11111122344443


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029656           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ..+...    .+.+.|+||.+..         +++        .-..+-++|.++++.+|+.++.+.+|
T Consensus       101 ~~i~~~~~~~~~~~~DlVvd~~D---------~~~--------~r~~ln~~~~~~~ip~v~~~~~g~~G  152 (240)
T TIGR02355       101 AKLDDAELAALIAEHDIVVDCTD---------NVE--------VRNQLNRQCFAAKVPLVSGAAIRMEG  152 (240)
T ss_pred             ccCCHHHHHHHhhcCCEEEEcCC---------CHH--------HHHHHHHHHHHcCCCEEEEEecccEe
Confidence            333221    2346888888863         111        12345688888888898877654444

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.12  E-value=0.0018  Score=46.11  Aligned_cols=75  Identities=17%  Similarity=0.228  Sum_probs=47.5

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      ++++++|+|+ |.+|..+++.|.+.+...|.+.+|+.+........+.. ..+.....|.. ....++|+||++....
T Consensus        18 ~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~Dvvi~~~~~~   92 (155)
T cd01065          18 KGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-LGIAIAYLDLE-ELLAEADLIINTTPVG   92 (155)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-cccceeecchh-hccccCCEEEeCcCCC
Confidence            5689999995 99999999999998447899988865443332222211 00111112221 2246799999998643

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.09  E-value=0.0028  Score=51.89  Aligned_cols=70  Identities=19%  Similarity=0.255  Sum_probs=42.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCe---EEEEcCCCCCChhhhhhhhcCCceEEEeccccc-cccCCcCEEEEccC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNE---VIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PLLIEVDQIYHLAC  106 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~---v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~d~vi~~ag  106 (190)
                      |++|.|.||||++|+.+.+.|+++....   +..+......  .....+.+ .  .....++.+ ..+.++|++|.+++
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg--~~~~~f~g-~--~~~v~~~~~~~~~~~~Divf~a~~   74 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAG--GAAPSFGG-K--EGTLQDAFDIDALKKLDIIITCQG   74 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhC--CcccccCC-C--cceEEecCChhHhcCCCEEEECCC
Confidence            3689999999999999999777764544   5555442111  11111111 1  122233332 34567999999985

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.07  E-value=0.0047  Score=46.57  Aligned_cols=71  Identities=11%  Similarity=0.118  Sum_probs=54.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.+++|+|.| +|-+|..-++.|++. |..|++++....   +.+..+....++.++..+.....+.+.+.||-+-
T Consensus         7 l~gk~vlVvG-gG~va~rk~~~Ll~~-ga~VtVvsp~~~---~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at   77 (205)
T TIGR01470         7 LEGRAVLVVG-GGDVALRKARLLLKA-GAQLRVIAEELE---SELTLLAEQGGITWLARCFDADILEGAFLVIAAT   77 (205)
T ss_pred             cCCCeEEEEC-cCHHHHHHHHHHHHC-CCEEEEEcCCCC---HHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECC
Confidence            4789999999 899999999999998 889999875432   3344444455888888887766667788877654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.05  E-value=0.0074  Score=49.72  Aligned_cols=104  Identities=19%  Similarity=0.167  Sum_probs=63.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh----------------------hhhhhhhcCCceEEEe
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~   87 (190)
                      +..++|+|.| .|.+|..+++.|+..|-.++.++++..-...                      ..+.++.+...+..+.
T Consensus       133 l~~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~  211 (376)
T PRK08762        133 LLEARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ  211 (376)
T ss_pred             HhcCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            3678999998 7899999999999994468888877521110                      1111111222333443


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceec
Q 029656           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVY  151 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~  151 (190)
                      ..+...    .+.++|+||++...         ..        .-..+-++|.+.++.+|+.+..+.+
T Consensus       212 ~~~~~~~~~~~~~~~D~Vv~~~d~---------~~--------~r~~ln~~~~~~~ip~i~~~~~g~~  262 (376)
T PRK08762        212 ERVTSDNVEALLQDVDVVVDGADN---------FP--------TRYLLNDACVKLGKPLVYGAVFRFE  262 (376)
T ss_pred             ccCChHHHHHHHhCCCEEEECCCC---------HH--------HHHHHHHHHHHcCCCEEEEEeccCE
Confidence            333321    23569999998731         11        1123667889999899988765433

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=97.02  E-value=0.017  Score=44.36  Aligned_cols=102  Identities=12%  Similarity=0.139  Sum_probs=62.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEec
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIRH   88 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~   88 (190)
                      .+.+|+|.| .|.+|.++++.|+..|-.++++++...-...+.                      +..+-+..++..+..
T Consensus        10 ~~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~   88 (231)
T cd00755          10 RNAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE   88 (231)
T ss_pred             hCCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence            568899999 899999999999999546888876553221111                      111111223444443


Q ss_pred             ccccc----c-cCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEeccee
Q 029656           89 DVTEP----L-LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV  150 (190)
Q Consensus        89 D~~~~----~-~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~  150 (190)
                      .+..+    . ..++|+||.+...                 ...-..+.+.|.++++++|...+++-
T Consensus        89 ~i~~~~~~~l~~~~~D~VvdaiD~-----------------~~~k~~L~~~c~~~~ip~I~s~g~g~  138 (231)
T cd00755          89 FLTPDNSEDLLGGDPDFVVDAIDS-----------------IRAKVALIAYCRKRKIPVISSMGAGG  138 (231)
T ss_pred             ecCHhHHHHHhcCCCCEEEEcCCC-----------------HHHHHHHHHHHHHhCCCEEEEeCCcC
Confidence            33311    1 1358999888631                 11223577889888888887766443

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.02  E-value=0.0016  Score=48.97  Aligned_cols=70  Identities=19%  Similarity=0.191  Sum_probs=45.5

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      .+.+|+++|+| .|.+|+.+++.|.+. |++|++.+++.+........+    ....  .|..+....++|+++.+|.
T Consensus        25 ~l~gk~v~I~G-~G~vG~~~A~~L~~~-G~~Vvv~D~~~~~~~~~~~~~----g~~~--v~~~~l~~~~~Dv~vp~A~   94 (200)
T cd01075          25 SLEGKTVAVQG-LGKVGYKLAEHLLEE-GAKLIVADINEEAVARAAELF----GATV--VAPEEIYSVDADVFAPCAL   94 (200)
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHc----CCEE--EcchhhccccCCEEEeccc
Confidence            35789999999 579999999999998 899998877543222211111    1222  2222222336888887764

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.02  E-value=0.015  Score=45.02  Aligned_cols=102  Identities=16%  Similarity=0.123  Sum_probs=63.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +...+|+|.| .|.+|..+++.|+..|-.++.+++.+.-...+.                      +..+-+..++..+.
T Consensus        30 L~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~  108 (245)
T PRK05690         30 LKAARVLVVG-LGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN  108 (245)
T ss_pred             hcCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence            4678999999 599999999999999546788876653222111                      11111223445554


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029656           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      ..+...    .+.++|+||.+..         +++        .-..+-++|.++++.+|+.++.+
T Consensus       109 ~~i~~~~~~~~~~~~DiVi~~~D---------~~~--------~r~~ln~~~~~~~ip~v~~~~~g  157 (245)
T PRK05690        109 ARLDDDELAALIAGHDLVLDCTD---------NVA--------TRNQLNRACFAAKKPLVSGAAIR  157 (245)
T ss_pred             ccCCHHHHHHHHhcCCEEEecCC---------CHH--------HHHHHHHHHHHhCCEEEEeeecc
Confidence            444432    2356999998862         111        12346678888888888766543

>PRK08328 hypothetical protein; Provisional

Probab=96.99  E-value=0.0065  Score=46.67  Aligned_cols=105  Identities=17%  Similarity=0.217  Sum_probs=63.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh-----------------------hhhhhcCCceEEE
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-----------------------LRKWIGHPRFELI   86 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-----------------------~~~~~~~~~~~~~   86 (190)
                      +.+.+|+|.| .|.+|.++++.|+..|-.++.+++.+.-...+.                       +..+-+...+..+
T Consensus        25 L~~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~  103 (231)
T PRK08328         25 LKKAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF  103 (231)
T ss_pred             HhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEE
Confidence            3668999999 899999999999999546788876543221111                       1111112233333


Q ss_pred             ecccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029656           87 RHDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        87 ~~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ...+...    .+.++|+||.+...         .        ..-..+-+.|.++++.+|+.++.+.+|
T Consensus       104 ~~~~~~~~~~~~l~~~D~Vid~~d~---------~--------~~r~~l~~~~~~~~ip~i~g~~~g~~G  156 (231)
T PRK08328        104 VGRLSEENIDEVLKGVDVIVDCLDN---------F--------ETRYLLDDYAHKKGIPLVHGAVEGTYG  156 (231)
T ss_pred             eccCCHHHHHHHHhcCCEEEECCCC---------H--------HHHHHHHHHHHHcCCCEEEEeeccCEE
Confidence            3333221    13467888877621         1        111235567888888999888776655

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=0.00099  Score=53.15  Aligned_cols=74  Identities=11%  Similarity=0.153  Sum_probs=48.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecc---ccccccCCcCEEEEccCCCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD---VTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D---~~~~~~~~~d~vi~~ag~~~  109 (190)
                      ..++|-|++||.|.-+++.|+.+ +.+..+-.|+..+....-..+.  .....+.+.   ..+....+.++|+||+|+..
T Consensus         7 ~d~iiYGAtGy~G~lvae~l~~~-g~~~aLAgRs~~kl~~l~~~LG--~~~~~~p~~~p~~~~~~~~~~~VVlncvGPyt   83 (382)
T COG3268           7 YDIIIYGATGYAGGLVAEYLARE-GLTAALAGRSSAKLDALRASLG--PEAAVFPLGVPAALEAMASRTQVVLNCVGPYT   83 (382)
T ss_pred             eeEEEEccccchhHHHHHHHHHc-CCchhhccCCHHHHHHHHHhcC--ccccccCCCCHHHHHHHHhcceEEEecccccc
Confidence            56899999999999999999999 6676666775444332222111  122223222   22334567999999999654

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=96.96  E-value=0.017  Score=46.34  Aligned_cols=101  Identities=16%  Similarity=0.285  Sum_probs=64.6

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEecccc
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIRHDVT   91 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~D~~   91 (190)
                      +|+|.| .|.+|.++++.|+..|-.++.+++.+.-...+.                      +.++-+..++..+..++.
T Consensus         1 kVlIVG-aGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~   79 (312)
T cd01489           1 KVLVVG-AGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK   79 (312)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence            589999 799999999999999546888876653222111                      111112235555656665


Q ss_pred             cc-----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029656           92 EP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        92 ~~-----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      +.     .+.++|+||.+..         +        ...-..+-+.|..+++.+|..++.+.+|
T Consensus        80 ~~~~~~~f~~~~DvVv~a~D---------n--------~~ar~~in~~c~~~~ip~I~~gt~G~~G  128 (312)
T cd01489          80 DPDFNVEFFKQFDLVFNALD---------N--------LAARRHVNKMCLAADVPLIESGTTGFLG  128 (312)
T ss_pred             CccchHHHHhcCCEEEECCC---------C--------HHHHHHHHHHHHHCCCCEEEEecCccee
Confidence            42     2357899988862         1        1112345678888888888888766555

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.96  E-value=0.013  Score=48.01  Aligned_cols=96  Identities=14%  Similarity=0.122  Sum_probs=56.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCC---eEEEE-cCCCCCChhhhhhhhcCCceEEEecccccc-ccCCcCEEEEccCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKN---EVIVV-DNYFTGSKDNLRKWIGHPRFELIRHDVTEP-LLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~---~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~d~vi~~ag~  107 (190)
                      ++|.|.|+||.+|+.+++.|..+...   +++.+ .++..+....    +.....  ...++.+. .+.++|++|.++|.
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~----f~~~~~--~v~~~~~~~~~~~vDivffa~g~   74 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPS----FGGTTG--TLQDAFDIDALKALDIIITCQGG   74 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCC----CCCCcc--eEEcCcccccccCCCEEEEcCCH
Confidence            47899999999999999999954333   23333 2222222111    111122  33345443 66789999999962


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      .                  .+..+...+++.|..-+.++.++.|.
T Consensus        75 ~------------------~s~~~~p~~~~aG~~~~VIDnSSa~R  101 (366)
T TIGR01745        75 D------------------YTNEIYPKLRESGWQGYWIDAASSLR  101 (366)
T ss_pred             H------------------HHHHHHHHHHhCCCCeEEEECChhhh
Confidence            1                  13456667778885444455555554

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.95  E-value=0.011  Score=50.01  Aligned_cols=76  Identities=16%  Similarity=0.123  Sum_probs=51.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh-hhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      ..+++|+|.| .|..|..+++.|.+. |+.|++.++++...... ...+ ...++.+...+-......++|.||...|..
T Consensus        12 ~~~~~i~v~G-~G~sG~a~a~~L~~~-G~~V~~~D~~~~~~~~~~~~~l-~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~   88 (458)
T PRK01710         12 IKNKKVAVVG-IGVSNIPLIKFLVKL-GAKVTAFDKKSEEELGEVSNEL-KELGVKLVLGENYLDKLDGFDVIFKTPSMR   88 (458)
T ss_pred             hcCCeEEEEc-ccHHHHHHHHHHHHC-CCEEEEECCCCCccchHHHHHH-HhCCCEEEeCCCChHHhccCCEEEECCCCC
Confidence            3578999999 889999999999999 89999998765432211 1122 123455554433323345789999998754

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.92  E-value=0.022  Score=43.13  Aligned_cols=106  Identities=19%  Similarity=0.230  Sum_probs=63.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh---------------------hhhhhhcCCceEEEec
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD---------------------NLRKWIGHPRFELIRH   88 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~---------------------~~~~~~~~~~~~~~~~   88 (190)
                      +...+|+|.| .|.+|..+++.|+..+-.++.+++.+.-...+                     .+..+-+..++..+..
T Consensus        26 L~~~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~  104 (212)
T PRK08644         26 LKKAKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE  104 (212)
T ss_pred             HhCCCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence            3668999999 79999999999999944678888775211110                     0111112234444444


Q ss_pred             ccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHc-CCeEEEEecceecCC
Q 029656           89 DVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GARILLTSTSEVYGD  153 (190)
Q Consensus        89 D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~i~vSS~~~~~~  153 (190)
                      .+.+.    .+.++|+||.+..         ++        ..-..+.+.|.+. ++.+|+.+...-|+.
T Consensus       105 ~i~~~~~~~~~~~~DvVI~a~D---------~~--------~~r~~l~~~~~~~~~~p~I~~~~~~~~~~  157 (212)
T PRK08644        105 KIDEDNIEELFKDCDIVVEAFD---------NA--------ETKAMLVETVLEHPGKKLVAASGMAGYGD  157 (212)
T ss_pred             ecCHHHHHHHHcCCCEEEECCC---------CH--------HHHHHHHHHHHHhCCCCEEEeehhhccCC
Confidence            44332    2346899888841         11        1123456777777 778888766554443

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.89  E-value=0.014  Score=47.76  Aligned_cols=105  Identities=15%  Similarity=0.043  Sum_probs=66.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +.+.+|+|.| .|.+|..+++.|+..|-.++.+++.+.-...+.                      +.++-+..++..+.
T Consensus        26 L~~~~VlivG-~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~  104 (355)
T PRK05597         26 LFDAKVAVIG-AGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV  104 (355)
T ss_pred             HhCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence            4678999999 799999999999999446788876653221111                      11111223455554


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029656           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ..+..+    .+.++|+||.+...         .        ..-..+-++|.+.++.+|+.+..+.+|
T Consensus       105 ~~i~~~~~~~~~~~~DvVvd~~d~---------~--------~~r~~~n~~c~~~~ip~v~~~~~g~~g  156 (355)
T PRK05597        105 RRLTWSNALDELRDADVILDGSDN---------F--------DTRHLASWAAARLGIPHVWASILGFDA  156 (355)
T ss_pred             eecCHHHHHHHHhCCCEEEECCCC---------H--------HHHHHHHHHHHHcCCCEEEEEEecCeE
Confidence            444432    23579999988731         1        111235678888888899887655443

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.88  E-value=0.0041  Score=49.28  Aligned_cols=74  Identities=16%  Similarity=0.139  Sum_probs=48.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEEeccccccccCCcCEEEEcc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      .+++++|.| +|..|++++..|+..+-.+|.++.|+.++.......+... ..+.....+-......+.|+||++.
T Consensus       126 ~~k~vlIlG-aGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaT  200 (284)
T PRK12549        126 SLERVVQLG-AGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHAT  200 (284)
T ss_pred             cCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECC
Confidence            568999999 6889999999999994358999999765554443333211 1222222221122345689999994

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.86  E-value=0.0036  Score=49.54  Aligned_cols=77  Identities=12%  Similarity=0.010  Sum_probs=48.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEec-cccccccCCcCEEEEccCCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~d~vi~~ag~~  108 (190)
                      .+++++|.| +|..|+.++..|.+.+-.+|+++.|+.++.......+.....+..+.. +-......+.|+|||+....
T Consensus       124 ~~k~vlvlG-aGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g  201 (282)
T TIGR01809       124 AGFRGLVIG-AGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD  201 (282)
T ss_pred             CCceEEEEc-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence            578999999 799999999999999446899999975544433332211111211110 10112235689999997644

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=96.83  E-value=0.0034  Score=47.13  Aligned_cols=39  Identities=31%  Similarity=0.324  Sum_probs=31.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD   72 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~   72 (190)
                      ||++.|.| +|.||..+++.|.+. +++|.+-.|+.++...
T Consensus         1 m~~~~i~G-tGniG~alA~~~a~a-g~eV~igs~r~~~~~~   39 (211)
T COG2085           1 MMIIAIIG-TGNIGSALALRLAKA-GHEVIIGSSRGPKALA   39 (211)
T ss_pred             CcEEEEec-cChHHHHHHHHHHhC-CCeEEEecCCChhHHH
Confidence            46666666 999999999999999 8999998776655443

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.81  E-value=0.0039  Score=49.33  Aligned_cols=36  Identities=14%  Similarity=0.277  Sum_probs=32.1

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      .+.+++++|.|++|.+|+.++..|++. +..|+++.|
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~-gatVtv~~~  191 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNA-NATVTICHS  191 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhC-CCEEEEEeC
Confidence            358999999999999999999999998 678888876

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.78  E-value=0.01  Score=42.78  Aligned_cols=68  Identities=16%  Similarity=0.228  Sum_probs=47.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.+++|+|.| +|-+|...++.|++. +++|+++..  +.. ..+..+   ..+.+..-.+......+.|.||-+.
T Consensus        11 l~~~~vlVvG-GG~va~rka~~Ll~~-ga~V~VIsp--~~~-~~l~~l---~~i~~~~~~~~~~dl~~a~lViaaT   78 (157)
T PRK06719         11 LHNKVVVIIG-GGKIAYRKASGLKDT-GAFVTVVSP--EIC-KEMKEL---PYITWKQKTFSNDDIKDAHLIYAAT   78 (157)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEcC--ccC-HHHHhc---cCcEEEecccChhcCCCceEEEECC
Confidence            5789999999 899999999999998 899998842  222 222222   2455555555555566778777654

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=96.77  E-value=0.02  Score=47.45  Aligned_cols=104  Identities=19%  Similarity=0.129  Sum_probs=64.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEec
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIRH   88 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~   88 (190)
                      ...+|+|.| .|.+|..+++.|+..|-.++.+++.+.-...+.                      +.++-+..++..+..
T Consensus        41 ~~~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  119 (392)
T PRK07878         41 KNARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF  119 (392)
T ss_pred             hcCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence            568999999 899999999999999446777776543222111                      111111123444444


Q ss_pred             ccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029656           89 DVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        89 D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      .+...    .+.++|+||.+..         +        ...-..+-++|.+.++.+|+.+..+.+|
T Consensus       120 ~i~~~~~~~~~~~~D~Vvd~~d---------~--------~~~r~~ln~~~~~~~~p~v~~~~~g~~G  170 (392)
T PRK07878        120 RLDPSNAVELFSQYDLILDGTD---------N--------FATRYLVNDAAVLAGKPYVWGSIYRFEG  170 (392)
T ss_pred             cCChhHHHHHHhcCCEEEECCC---------C--------HHHHHHHHHHHHHcCCCEEEEEeccCEE
Confidence            44332    2346898887762         1        1112345678888888999888766555

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=96.77  E-value=0.006  Score=48.72  Aligned_cols=81  Identities=16%  Similarity=0.204  Sum_probs=51.1

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCCCccc
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFY  113 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~~~~  113 (190)
                      +|.|.|++||.|..+++.|..+...++..+..+...              .  ..|. +....++|++|.+.....    
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~--------------~--~~~~-~~~~~~~D~vFlalp~~~----   61 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK--------------D--AAER-AKLLNAADVAILCLPDDA----   61 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc--------------C--cCCH-hHhhcCCCEEEECCCHHH----
Confidence            699999999999999999999965565555332110              0  0011 112246899998874210    


Q ss_pred             ccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029656          114 KYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       114 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                                    +..++..+.+.++++|=.|+..
T Consensus        62 --------------s~~~~~~~~~~g~~VIDlSadf   83 (310)
T TIGR01851        62 --------------AREAVSLVDNPNTCIIDASTAY   83 (310)
T ss_pred             --------------HHHHHHHHHhCCCEEEECChHH
Confidence                          2334455555677888777755

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>cd05295 MDH_like Malate dehydrogenase-like

Probab=96.76  E-value=0.024  Score=47.65  Aligned_cols=111  Identities=12%  Similarity=0.089  Sum_probs=69.6

Q ss_pred             CEEEEEcccchHHHHHHHHHHhc---C-CCeE--EEEcCC--CCCChhhhhhhhcC-----CceEEEeccccccccCCcC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMEN---E-KNEV--IVVDNY--FTGSKDNLRKWIGH-----PRFELIRHDVTEPLLIEVD   99 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~---~-~~~v--~~~~r~--~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~d   99 (190)
                      .+|+||||+|.||.+|+..++.-   | ...|  .+++..  .+...-...++.+.     ..+.... | ...++.++|
T Consensus       124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~-~-~~ea~~daD  201 (452)
T cd05295         124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT-D-LDVAFKDAH  201 (452)
T ss_pred             eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE-C-CHHHhCCCC
Confidence            67999999999999999999983   1 2333  334442  12221111112111     1233321 2 235677899


Q ss_pred             EEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC---CeEEEEec
Q 029656          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTST  147 (190)
Q Consensus       100 ~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~~i~vSS  147 (190)
                      +||-.+|...  ...+...+.++.|..-...+.+...++.   .+++.+.|
T Consensus       202 vvIitag~pr--k~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t  250 (452)
T cd05295         202 VIVLLDDFLI--KEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR  250 (452)
T ss_pred             EEEECCCCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence            9999998543  2334566788999999888888887664   46777765

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.75  E-value=0.0036  Score=47.60  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=32.2

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      |+|.|+||+|.+|..++..|.+. +++|.+..|+++..
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~-G~~V~v~~r~~~~~   37 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKA-GNKIIIGSRDLEKA   37 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhC-CCEEEEEEcCHHHH
Confidence            57999999999999999999998 79999888865443

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK04148 hypothetical protein; Provisional

Probab=96.73  E-value=0.018  Score=40.28  Aligned_cols=88  Identities=24%  Similarity=0.333  Sum_probs=61.8

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccC---CcCEEEEccCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI---EVDQIYHLACP  107 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~---~~d~vi~~ag~  107 (190)
                      +++++++.| .| -|..++..|.+. |++|++++.++..... ..    ...+..+..|+.+....   +.|.|.-+=  
T Consensus        16 ~~~kileIG-~G-fG~~vA~~L~~~-G~~ViaIDi~~~aV~~-a~----~~~~~~v~dDlf~p~~~~y~~a~liysir--   85 (134)
T PRK04148         16 KNKKIVELG-IG-FYFKVAKKLKES-GFDVIVIDINEKAVEK-AK----KLGLNAFVDDLFNPNLEIYKNAKLIYSIR--   85 (134)
T ss_pred             cCCEEEEEE-ec-CCHHHHHHHHHC-CCEEEEEECCHHHHHH-HH----HhCCeEEECcCCCCCHHHHhcCCEEEEeC--
Confidence            457899999 77 899999999998 8999999886553221 11    22578899999987653   567664332  


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEE
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL  143 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i  143 (190)
                              .+.+.       ...+++.+++.+..++
T Consensus        86 --------pp~el-------~~~~~~la~~~~~~~~  106 (134)
T PRK04148         86 --------PPRDL-------QPFILELAKKINVPLI  106 (134)
T ss_pred             --------CCHHH-------HHHHHHHHHHcCCCEE
Confidence                    22232       2468889999888544

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.71  E-value=0.0026  Score=50.48  Aligned_cols=69  Identities=13%  Similarity=0.081  Sum_probs=46.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.+++++|+| .|.+|+.+++.|... |.+|.+..|+......    .. ......+..+-......+.|+||++.
T Consensus       149 l~gk~v~IiG-~G~iG~avA~~L~~~-G~~V~v~~R~~~~~~~----~~-~~g~~~~~~~~l~~~l~~aDiVint~  217 (287)
T TIGR02853       149 IHGSNVMVLG-FGRTGMTIARTFSAL-GARVFVGARSSADLAR----IT-EMGLIPFPLNKLEEKVAEIDIVINTI  217 (287)
T ss_pred             CCCCEEEEEc-ChHHHHHHHHHHHHC-CCEEEEEeCCHHHHHH----HH-HCCCeeecHHHHHHHhccCCEEEECC
Confidence            4689999999 688999999999998 7899999886432211    11 11222222222223446799999986

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.71  E-value=0.013  Score=54.09  Aligned_cols=72  Identities=22%  Similarity=0.283  Sum_probs=48.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCe-------------EEEEcCCCCCChhhhhhhhcCCceEEEeccccccc---
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNE-------------VIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL---   94 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~-------------v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~---   94 (190)
                      .+++|+|.| +|++|+..++.|.+..+.+             |.+.++..+.... +...  ..++..++.|+.|.+   
T Consensus       568 ~~~rIlVLG-AG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~-la~~--~~~~~~v~lDv~D~e~L~  643 (1042)
T PLN02819        568 KSQNVLILG-AGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKE-TVEG--IENAEAVQLDVSDSESLL  643 (1042)
T ss_pred             cCCcEEEEC-CCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHH-HHHh--cCCCceEEeecCCHHHHH
Confidence            468999999 6999999999999874433             6666664332222 1111  125667888887753   


Q ss_pred             --cCCcCEEEEccC
Q 029656           95 --LIEVDQIYHLAC  106 (190)
Q Consensus        95 --~~~~d~vi~~ag  106 (190)
                        ..++|+||.+..
T Consensus       644 ~~v~~~DaVIsalP  657 (1042)
T PLN02819        644 KYVSQVDVVISLLP  657 (1042)
T ss_pred             HhhcCCCEEEECCC
Confidence              246999999985

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=96.69  E-value=0.03  Score=43.10  Aligned_cols=101  Identities=17%  Similarity=0.179  Sum_probs=62.7

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEecccc
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIRHDVT   91 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~~D~~   91 (190)
                      +|+|.| .|.+|.++++.|+..|-.++.+++.+.-...+.                      +.++-+..++..+..++.
T Consensus         1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~   79 (234)
T cd01484           1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG   79 (234)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            488999 899999999999999546788876653221111                      111112234555555553


Q ss_pred             c------cccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029656           92 E------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        92 ~------~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      +      ....++|+||.+..                 |...-..+-+.|...++.+|..++.+.+|
T Consensus        80 ~~~~~~~~f~~~~DvVi~a~D-----------------n~~aR~~ln~~c~~~~iplI~~g~~G~~G  129 (234)
T cd01484          80 PEQDFNDTFFEQFHIIVNALD-----------------NIIARRYVNGMLIFLIVPLIESGTEGFKG  129 (234)
T ss_pred             hhhhchHHHHhCCCEEEECCC-----------------CHHHHHHHHHHHHHcCCCEEEEcccCCce
Confidence            2      12356899988752                 12223446677888888888877755444

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.68  E-value=0.012  Score=47.12  Aligned_cols=34  Identities=24%  Similarity=0.252  Sum_probs=30.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ++|.|+| .|.+|..++..|+++ |++|++.+|++.
T Consensus         3 ~~V~VIG-~G~mG~~iA~~la~~-G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIG-AGLIGRAWAIVFARA-GHEVRLWDADPA   36 (308)
T ss_pred             cEEEEEC-ccHHHHHHHHHHHHC-CCeeEEEeCCHH
Confidence            5799999 999999999999999 899999998754

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.66  E-value=0.057  Score=42.42  Aligned_cols=36  Identities=22%  Similarity=0.324  Sum_probs=30.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      +.+.+|+|.| .|.+|.++++.|+..+-.++++++.+
T Consensus        28 L~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         28 FADAHICVVG-IGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             hcCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            3678999999 89999999999999943688888655

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.61  E-value=0.0042  Score=51.79  Aligned_cols=77  Identities=13%  Similarity=0.127  Sum_probs=51.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      ..+++++|.| +|.+|+.+++.|...+...++++.|..+........ .+.  ......|-....+.+.|+||++.+...
T Consensus       179 l~~kkvlviG-aG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~-~~~--~~~~~~~~l~~~l~~aDiVI~aT~a~~  254 (414)
T PRK13940        179 ISSKNVLIIG-AGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSA-FRN--ASAHYLSELPQLIKKADIIIAAVNVLE  254 (414)
T ss_pred             ccCCEEEEEc-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH-hcC--CeEecHHHHHHHhccCCEEEECcCCCC
Confidence            4779999999 699999999999998446899999975443332222 211  222222322234567999999987544


Q ss_pred             C
Q 029656          110 P  110 (190)
Q Consensus       110 ~  110 (190)
                      +
T Consensus       255 ~  255 (414)
T PRK13940        255 Y  255 (414)
T ss_pred             e
Confidence            3

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=96.61  E-value=0.041  Score=43.98  Aligned_cols=106  Identities=14%  Similarity=0.110  Sum_probs=71.2

Q ss_pred             EEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcC-----CceEEEeccccccccCCcCEEEEccCCCCC
Q 029656           37 VTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH-----PRFELIRHDVTEPLLIEVDQIYHLACPASP  110 (190)
Q Consensus        37 ItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~d~vi~~ag~~~~  110 (190)
                      |.| .|.+|..++..|+..+- .++.++++..+.......++.+.     ..+.....|  .+.+.+.|+||-.||... 
T Consensus         1 iIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~--~~~~~daDivVitag~~r-   76 (299)
T TIGR01771         1 IIG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGD--YSDCKDADLVVITAGAPQ-   76 (299)
T ss_pred             CCC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCC--HHHHCCCCEEEECCCCCC-
Confidence            456 69999999999988743 47888888665555444443221     122332222  245678999999998643 


Q ss_pred             cccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029656          111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                       ....+..+.++.|..-...+.+.+++++-  .+|.+|.
T Consensus        77 -k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN  114 (299)
T TIGR01771        77 -KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN  114 (299)
T ss_pred             -CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence             22345667889999999999888877653  6666665

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.60  E-value=0.029  Score=46.16  Aligned_cols=105  Identities=20%  Similarity=0.258  Sum_probs=64.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +...+|+|.| .|.+|..+++.|+..|-.++.+++.+.-...+.                      +..+-+..++..+.
T Consensus        39 l~~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~  117 (370)
T PRK05600         39 LHNARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR  117 (370)
T ss_pred             hcCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence            3568999999 899999999999999446888887653221111                      11111223444444


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029656           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ..+...    .+.++|+||.|...                 ...-..+-++|.+.++.+|+.+..+.+|
T Consensus       118 ~~i~~~~~~~~~~~~DlVid~~Dn-----------------~~~r~~in~~~~~~~iP~v~~~~~g~~G  169 (370)
T PRK05600        118 ERLTAENAVELLNGVDLVLDGSDS-----------------FATKFLVADAAEITGTPLVWGTVLRFHG  169 (370)
T ss_pred             eecCHHHHHHHHhCCCEEEECCCC-----------------HHHHHHHHHHHHHcCCCEEEEEEecCEE
Confidence            444321    24569999888731                 1112345578888888888877654333

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.58  E-value=0.007  Score=48.26  Aligned_cols=99  Identities=14%  Similarity=0.155  Sum_probs=61.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEE-eccccccccCCcCEEEEccCCCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELI-RHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      .|+++.|+|+.| ||.--++.-... |.+|+++++...+.++.+..+....-+... ..|.......-.|.++|++....
T Consensus       181 pG~~vgI~GlGG-LGh~aVq~AKAM-G~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~a  258 (360)
T KOG0023|consen  181 PGKWVGIVGLGG-LGHMAVQYAKAM-GMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNLA  258 (360)
T ss_pred             CCcEEEEecCcc-cchHHHHHHHHh-CcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeecc
Confidence            789999999888 999888888888 999999999877777776655432222222 22332222233566666553111


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEec
Q 029656          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS  147 (190)
                          +..           ...++++++..+ ++|+++-
T Consensus       259 ----~~~-----------~~~~~~~lk~~G-t~V~vg~  280 (360)
T KOG0023|consen  259 ----EHA-----------LEPLLGLLKVNG-TLVLVGL  280 (360)
T ss_pred             ----ccc-----------hHHHHHHhhcCC-EEEEEeC
Confidence                111           123555666544 8888874

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.56  E-value=0.0049  Score=47.13  Aligned_cols=69  Identities=20%  Similarity=0.327  Sum_probs=51.9

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------CCcCEEEEccC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------~~~d~vi~~ag  106 (190)
                      |+++|.| .|-+|+.+++.|.++ |++|.++.++.+.......   .....+.+.+|-++...      .++|+++-.-+
T Consensus         1 m~iiIiG-~G~vG~~va~~L~~~-g~~Vv~Id~d~~~~~~~~~---~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~   75 (225)
T COG0569           1 MKIIIIG-AGRVGRSVARELSEE-GHNVVLIDRDEERVEEFLA---DELDTHVVIGDATDEDVLEEAGIDDADAVVAATG   75 (225)
T ss_pred             CEEEEEC-CcHHHHHHHHHHHhC-CCceEEEEcCHHHHHHHhh---hhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence            5788888 899999999999999 8999999886544333221   12467888899988643      45888887664

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.55  E-value=0.024  Score=48.14  Aligned_cols=72  Identities=24%  Similarity=0.185  Sum_probs=48.8

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      .+++|+|.| .|..|..+++.|++. |..|++.+++.....    ++....++.+...+-......++|.||...|+.
T Consensus        14 ~~~~v~v~G-~G~sG~a~a~~L~~~-G~~V~~~D~~~~~~~----~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~   85 (473)
T PRK00141         14 LSGRVLVAG-AGVSGRGIAAMLSEL-GCDVVVADDNETARH----KLIEVTGVADISTAEASDQLDSFSLVVTSPGWR   85 (473)
T ss_pred             cCCeEEEEc-cCHHHHHHHHHHHHC-CCEEEEECCChHHHH----HHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCC
Confidence            678899999 889999999999999 789999887543221    111122455544322222345689999998865

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=96.54  E-value=0.017  Score=45.21  Aligned_cols=115  Identities=19%  Similarity=0.083  Sum_probs=69.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCC-CCCChhhhhhhhcCCceEEEe-ccccccccCCcCEEEEccCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNY-FTGSKDNLRKWIGHPRFELIR-HDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~d~vi~~ag~  107 (190)
                      .+-+|.|.|+.|.||+.|.-.|..... .+..+.+-. -+.....+-++-....+..+. .|-....+.+.|+|+--||.
T Consensus        27 ~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPAGV  106 (345)
T KOG1494|consen   27 RGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPAGV  106 (345)
T ss_pred             CcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecCCC
Confidence            567899999999999999877665522 122222211 112222222221122333322 22223345679999999985


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcC-C-eEEEEec
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~~i~vSS  147 (190)
                      ..  ......++.|.+|..-...+..++.+.. . .+.++|.
T Consensus       107 PR--KPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN  146 (345)
T KOG1494|consen  107 PR--KPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISN  146 (345)
T ss_pred             CC--CCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence            43  3345567889999999999988887764 3 5666765

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.54  E-value=0.0076  Score=43.99  Aligned_cols=36  Identities=19%  Similarity=0.388  Sum_probs=31.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      +.+++++|.|+++.+|..+++.|.++ +.+|.++.|.
T Consensus        42 l~gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~   77 (168)
T cd01080          42 LAGKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSK   77 (168)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECC
Confidence            58899999998777899999999998 7788888875

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08223 hypothetical protein; Validated

Probab=96.52  E-value=0.068  Score=42.34  Aligned_cols=104  Identities=13%  Similarity=0.052  Sum_probs=63.5

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +...+|+|.| .|.+|..+++.|+..|-.++.+++.+.-...+.                      +.++-+..++..+.
T Consensus        25 L~~s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~  103 (287)
T PRK08223         25 LRNSRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP  103 (287)
T ss_pred             HhcCCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            3678999999 899999999999999546787776653222111                      11111223455554


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029656           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      ..++.+    .+.++|+||.+.-         ++      +...-..+-++|.++++.+|+.+...
T Consensus       104 ~~l~~~n~~~ll~~~DlVvD~~D---------~~------~~~~r~~ln~~c~~~~iP~V~~~~~g  154 (287)
T PRK08223        104 EGIGKENADAFLDGVDVYVDGLD---------FF------EFDARRLVFAACQQRGIPALTAAPLG  154 (287)
T ss_pred             cccCccCHHHHHhCCCEEEECCC---------CC------cHHHHHHHHHHHHHcCCCEEEEeccC
Confidence            444432    2346898886652         11      01112456688999998888876533

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=96.51  E-value=0.0081  Score=47.49  Aligned_cols=108  Identities=16%  Similarity=0.080  Sum_probs=65.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCC-ceEEEeccccccccC-CcCEEEEccCCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP-RFELIRHDVTEPLLI-EVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~-~~d~vi~~ag~~  108 (190)
                      ++++++|.| +|..+++++..|++.+-.+++++.|..+........+.... .+..  .+..+.... ..|+|||+-...
T Consensus       125 ~~~~vlilG-AGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~--~~~~~~~~~~~~dliINaTp~G  201 (283)
T COG0169         125 TGKRVLILG-AGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEA--AALADLEGLEEADLLINATPVG  201 (283)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccccc--ccccccccccccCEEEECCCCC
Confidence            578999999 78899999999999943789999997665444333322111 1112  223222323 589999997544


Q ss_pred             CCcccccC--ch-------hHHHHHHH-HHHHHHHHHHHcCCe
Q 029656          109 SPIFYKYN--PV-------KTIKTNVI-GTLNMLGLAKRVGAR  141 (190)
Q Consensus       109 ~~~~~~~~--~~-------~~~~~n~~-~~~~l~~~~~~~~~~  141 (190)
                      .......+  +.       -.+++.+. ..-.+++.|++++++
T Consensus       202 m~~~~~~~~~~~~~l~~~~~v~D~vY~P~~TplL~~A~~~G~~  244 (283)
T COG0169         202 MAGPEGDSPVPAELLPKGAIVYDVVYNPLETPLLREARAQGAK  244 (283)
T ss_pred             CCCCCCCCCCcHHhcCcCCEEEEeccCCCCCHHHHHHHHcCCe
Confidence            32210010  01       12333443 234678899998877

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.50  E-value=0.032  Score=46.85  Aligned_cols=75  Identities=19%  Similarity=0.096  Sum_probs=54.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      +|+|+|.| -|--|..+++.|.+. |..|++.+.++.. ............+....+...+.....+|.||-+.|+..
T Consensus         7 ~~kv~V~G-LG~sG~a~a~~L~~~-G~~v~v~D~~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~   81 (448)
T COG0771           7 GKKVLVLG-LGKSGLAAARFLLKL-GAEVTVSDDRPAP-EGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPP   81 (448)
T ss_pred             CCEEEEEe-cccccHHHHHHHHHC-CCeEEEEcCCCCc-cchhhhhhhccCceeecCccchhccccCCEEEECCCCCC
Confidence            89999999 899999999999999 8999999866554 211111112345566555555555677999999998654

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.49  E-value=0.049  Score=43.44  Aligned_cols=107  Identities=13%  Similarity=0.079  Sum_probs=65.3

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCCCCChhhhhhhhcC-----CceEEEe-ccccccccCCcCEEEEccCC
Q 029656           35 ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGH-----PRFELIR-HDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~~-~D~~~~~~~~~d~vi~~ag~  107 (190)
                      |.|+|+ |.+|..++..|+.+ +. +|.+++++.+.......++...     ....+.. .|  ..++.+.|+||.++|.
T Consensus         1 I~IIGa-G~vG~~ia~~la~~-~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d--~~~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALK-ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND--YEDIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhC-CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC--HHHhCCCCEEEEecCC
Confidence            468996 99999999999987 43 9999988755332111111110     1122221 33  2346789999999985


Q ss_pred             CCCcccccCchhHHHHHHHHHHHHHHHHHHcCC--eEEEEec
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~i~vSS  147 (190)
                      ...  ......+.+..|+.....+++...+...  .+|.+|.
T Consensus        77 p~~--~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN  116 (300)
T cd01339          77 PRK--PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN  116 (300)
T ss_pred             CCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            432  2233345566777777777777766543  4555554

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK07411 hypothetical protein; Validated

Probab=96.47  E-value=0.04  Score=45.69  Aligned_cols=105  Identities=14%  Similarity=0.060  Sum_probs=65.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +...+|+|.| .|.+|..+++.|+..|-.++.+++.+.-...+.                      +..+-+..++..+.
T Consensus        36 L~~~~VlivG-~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~  114 (390)
T PRK07411         36 LKAASVLCIG-TGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYE  114 (390)
T ss_pred             HhcCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEe
Confidence            3668999999 899999999999999546788776653222111                      11111223455555


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029656           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ..+...    .+.++|+||.+...         .+        .-..+-++|.+.++.+|+.+..+-+|
T Consensus       115 ~~~~~~~~~~~~~~~D~Vvd~~d~---------~~--------~r~~ln~~~~~~~~p~v~~~~~g~~g  166 (390)
T PRK07411        115 TRLSSENALDILAPYDVVVDGTDN---------FP--------TRYLVNDACVLLNKPNVYGSIFRFEG  166 (390)
T ss_pred             cccCHHhHHHHHhCCCEEEECCCC---------HH--------HHHHHHHHHHHcCCCEEEEEEccCEE
Confidence            545432    23569999988731         11        11235578888888888877655444

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.46  E-value=0.078  Score=38.86  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=27.4

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      +|+|.| .|.+|..+++.|+..+-.++.+++.+.
T Consensus         1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            488999 799999999999999435788887764

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.45  E-value=0.017  Score=46.45  Aligned_cols=97  Identities=15%  Similarity=0.213  Sum_probs=53.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhc-CCCe-EEE--EcCCCCCChhhhhhhhcCCceEEEeccccc-cccCCcCEEEEccC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMEN-EKNE-VIV--VDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PLLIEVDQIYHLAC  106 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~-~~~~-v~~--~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~d~vi~~ag  106 (190)
                      +++|.|.|+||.+|+.+++.|.++ .... +.+  ..|+.....-.+..    ..+... -+..+ ....++|++|.++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~----~~~~v~-~~~~~~~~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGG----KSIGVP-EDAADEFVFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccC----ccccCc-cccccccccccCCEEEEeCc
Confidence            368999999999999999999995 2222 222  23322222111111    011111 11111 23447999999996


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCC
Q 029656          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD  153 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~  153 (190)
                      ...                  +..+...+.+.|  .+.++.++.|..
T Consensus        76 ~~~------------------s~~~~p~~~~~G--~~VIdnsSa~Rm  102 (334)
T COG0136          76 GSV------------------SKEVEPKAAEAG--CVVIDNSSAFRM  102 (334)
T ss_pred             hHH------------------HHHHHHHHHHcC--CEEEeCCccccc
Confidence            321                  244666777777  444555555543

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.43  E-value=0.034  Score=45.29  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=27.6

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      +.+|.|.|. |.||+.+++.+.++.+.++..+..
T Consensus         1 ~ikVaI~G~-GrIGr~va~al~~~~d~eLvav~d   33 (341)
T PRK04207          1 MIKVGVNGY-GTIGKRVADAVAAQPDMELVGVAK   33 (341)
T ss_pred             CeEEEEECC-CHHHHHHHHHHhcCCCcEEEEEEC
Confidence            368999997 999999999999876677777654

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=96.42  E-value=0.0057  Score=49.85  Aligned_cols=75  Identities=16%  Similarity=0.163  Sum_probs=45.8

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCC-CeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc----ccCCcCEEEEc
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP----LLIEVDQIYHL  104 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~----~~~~~d~vi~~  104 (190)
                      .+++.|||.||+|.+|+++++.+... + ..|.+.++  ....+..+.+....-+++-..|+.+.    ...++|+|+.|
T Consensus       156 ~~g~~vLv~ggsggVG~~aiQlAk~~-~~~~v~t~~s--~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~  232 (347)
T KOG1198|consen  156 SKGKSVLVLGGSGGVGTAAIQLAKHA-GAIKVVTACS--KEKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDC  232 (347)
T ss_pred             CCCCeEEEEeCCcHHHHHHHHHHHhc-CCcEEEEEcc--cchHHHHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEEC
Confidence            46789999999999999999998888 5 55555544  22233333332111122211122211    13369999999


Q ss_pred             cCC
Q 029656          105 ACP  107 (190)
Q Consensus       105 ag~  107 (190)
                      .|.
T Consensus       233 vg~  235 (347)
T KOG1198|consen  233 VGG  235 (347)
T ss_pred             CCC
Confidence            985

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.42  E-value=0.0059  Score=48.65  Aligned_cols=69  Identities=16%  Similarity=0.109  Sum_probs=46.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +.+++++|+| .|.+|+.++..|... |.+|++.+|+..... ...    .....++..+-......+.|+||++.
T Consensus       150 l~g~kvlViG-~G~iG~~~a~~L~~~-Ga~V~v~~r~~~~~~-~~~----~~G~~~~~~~~l~~~l~~aDiVI~t~  218 (296)
T PRK08306        150 IHGSNVLVLG-FGRTGMTLARTLKAL-GANVTVGARKSAHLA-RIT----EMGLSPFHLSELAEEVGKIDIIFNTI  218 (296)
T ss_pred             CCCCEEEEEC-CcHHHHHHHHHHHHC-CCEEEEEECCHHHHH-HHH----HcCCeeecHHHHHHHhCCCCEEEECC
Confidence            3679999999 588999999999998 789999988643211 111    11233332222223346799999986

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.39  E-value=0.021  Score=48.04  Aligned_cols=67  Identities=22%  Similarity=0.377  Sum_probs=49.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc------cCCcCEEEEcc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~~d~vi~~a  105 (190)
                      |+++|+|+ |.+|+.+++.|.++ +++|.+++++++.    ...+.....+.++.+|..+..      ..++|.||.+.
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~-g~~v~vid~~~~~----~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~   73 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGE-NNDVTVIDTDEER----LRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT   73 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhC-CCcEEEEECCHHH----HHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence            57999995 99999999999998 8899999875443    322222236788888887652      34688877765

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.36  E-value=0.0064  Score=48.78  Aligned_cols=73  Identities=19%  Similarity=0.276  Sum_probs=48.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      ..+++|+|.| +|-+|..+++.|...+..+|+++.|+.+........+ +   ......+-......+.|+||.+.+.
T Consensus       176 l~~~~V~ViG-aG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~-g---~~~~~~~~~~~~l~~aDvVi~at~~  248 (311)
T cd05213         176 LKGKKVLVIG-AGEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL-G---GNAVPLDELLELLNEADVVISATGA  248 (311)
T ss_pred             ccCCEEEEEC-cHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc-C---CeEEeHHHHHHHHhcCCEEEECCCC
Confidence            3689999999 5999999999999875578999988654433332222 1   1222222112234568999999864

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR01408 Ube1 ubiquitin-activating enzyme E1

Probab=96.32  E-value=0.02  Score=52.76  Aligned_cols=104  Identities=11%  Similarity=0.096  Sum_probs=68.0

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh----------------------hhhhhhhcCCceEEEec
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK----------------------DNLRKWIGHPRFELIRH   88 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~----------------------~~~~~~~~~~~~~~~~~   88 (190)
                      ...+|+|.| .|.+|.++++.|+..|-..+.+++...-...                      ..+.++-+...+.....
T Consensus        23 ~~s~VLIiG-~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~  101 (1008)
T TIGR01408        23 AKSNVLISG-MGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSSSV  101 (1008)
T ss_pred             hhCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEecc
Confidence            557899999 6889999999999995467887765422111                      11122212235555555


Q ss_pred             cccccccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcC--CeEEEEecceecC
Q 029656           89 DVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARILLTSTSEVYG  152 (190)
Q Consensus        89 D~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~i~vSS~~~~~  152 (190)
                      ++..+.+.++|+||.+-.         +..        ....+-++|++++  +.+|+.++.+.||
T Consensus       102 ~l~~e~l~~fdvVV~t~~---------~~~--------~~~~in~~cr~~~~~I~fI~~~~~G~~G  150 (1008)
T TIGR01408       102 PFNEEFLDKFQCVVLTEM---------SLP--------LQKEINDFCHSQCPPIAFISADVRGLFG  150 (1008)
T ss_pred             cCCHHHHcCCCEEEECCC---------CHH--------HHHHHHHHHHHcCCCeEEEEEeecceEE
Confidence            565555668999988642         111        1235668999998  6799888877666

This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.27  E-value=0.012  Score=50.66  Aligned_cols=74  Identities=15%  Similarity=0.125  Sum_probs=46.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEec-cccccccCCcCEEEEccCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +.+++++|+|+ |.+|++++..|++. |.+|.++.|+.+........+ ..   ..+.. |+.+......|+|||+....
T Consensus       377 ~~~k~vlIlGa-GGagrAia~~L~~~-G~~V~i~nR~~e~a~~la~~l-~~---~~~~~~~~~~~~~~~~diiINtT~vG  450 (529)
T PLN02520        377 LAGKLFVVIGA-GGAGKALAYGAKEK-GARVVIANRTYERAKELADAV-GG---QALTLADLENFHPEEGMILANTTSVG  450 (529)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHHHh-CC---ceeeHhHhhhhccccCeEEEecccCC
Confidence            36789999996 89999999999999 679999888644333322222 11   11111 11111122468888887644


Q ss_pred             C
Q 029656          109 S  109 (190)
Q Consensus       109 ~  109 (190)
                      .
T Consensus       451 m  451 (529)
T PLN02520        451 M  451 (529)
T ss_pred             C
Confidence            3

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.26  E-value=0.13  Score=34.12  Aligned_cols=64  Identities=22%  Similarity=0.305  Sum_probs=44.7

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +++++|+|.| +|-+|..-++.|++. |.+|+++....    ....     ..+.+..-+.. ..+.+.+.||-+-
T Consensus         5 l~~~~vlVvG-gG~va~~k~~~Ll~~-gA~v~vis~~~----~~~~-----~~i~~~~~~~~-~~l~~~~lV~~at   68 (103)
T PF13241_consen    5 LKGKRVLVVG-GGPVAARKARLLLEA-GAKVTVISPEI----EFSE-----GLIQLIRREFE-EDLDGADLVFAAT   68 (103)
T ss_dssp             -TT-EEEEEE-ESHHHHHHHHHHCCC-TBEEEEEESSE----HHHH-----TSCEEEESS-G-GGCTTESEEEE-S
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEECCch----hhhh-----hHHHHHhhhHH-HHHhhheEEEecC
Confidence            5789999999 699999999999999 89999998754    1111     35566655553 5566788777544

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=96.24  E-value=0.0051  Score=49.72  Aligned_cols=74  Identities=20%  Similarity=0.167  Sum_probs=46.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccc----c-CCcCEEEEcc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL----L-IEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~----~-~~~d~vi~~a  105 (190)
                      .+.+|||+||+|.+|...++.+...+...|.+..+ +++.. .+..+....-+.+..-|+.+..    . .++|+|+...
T Consensus       142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s-~~k~~-~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v  219 (326)
T COG0604         142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS-SEKLE-LLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV  219 (326)
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecC-HHHHH-HHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence            47999999999999999999999993344444444 33322 3333332223333333433321    1 2599999998


Q ss_pred             C
Q 029656          106 C  106 (190)
Q Consensus       106 g  106 (190)
                      |
T Consensus       220 G  220 (326)
T COG0604         220 G  220 (326)
T ss_pred             C
Confidence            6

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.12  E-value=0.0098  Score=50.01  Aligned_cols=66  Identities=24%  Similarity=0.254  Sum_probs=43.5

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |+|.|+||.|.+|.++++.|.+. |++|.+.+|+.+........    .++.. ..|. .....++|+||-+.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~-G~~V~v~~r~~~~~~~~a~~----~gv~~-~~~~-~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEK-GFEVIVTGRDPKKGKEVAKE----LGVEY-ANDN-IDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHC-CCEEEEEECChHHHHHHHHH----cCCee-ccCH-HHHhccCCEEEEec
Confidence            57999999999999999999998 78999998864332221111    12221 1121 12345689988876

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.12  E-value=0.018  Score=45.56  Aligned_cols=37  Identities=14%  Similarity=0.260  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      .+.|++++|+|+++.+|+.++..|.++ +..|+++.++
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~-gatVtv~~s~  191 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQK-NASVTILHSR  191 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHC-CCeEEEEeCC
Confidence            468999999999999999999999998 7888888664

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.11  E-value=0.096  Score=44.08  Aligned_cols=74  Identities=19%  Similarity=0.150  Sum_probs=49.8

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccccCCcCEEEEccCCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      .+++++|+|. |.+|..+++.|.++ |+.|.+.+......  ....+.. ..++.+......+....++|.||...|+.
T Consensus         4 ~~~~~~v~G~-g~~G~~~a~~l~~~-g~~v~~~d~~~~~~--~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~   78 (445)
T PRK04308          4 QNKKILVAGL-GGTGISMIAYLRKN-GAEVAAYDAELKPE--RVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGIS   78 (445)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEeCCCCch--hHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence            5689999995 68999999999999 88999987654421  1112211 12455554443333345789999998864

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.11  E-value=0.044  Score=46.76  Aligned_cols=73  Identities=15%  Similarity=0.140  Sum_probs=49.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      ..+++|+|.| .|-.|...++.|... |.+|++.+++...    ...+. ..++.++..+-....+.++|+||...|+..
T Consensus        10 ~~~~~v~V~G-~G~sG~aa~~~L~~~-G~~v~~~D~~~~~----~~~l~-~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~   82 (488)
T PRK03369         10 LPGAPVLVAG-AGVTGRAVLAALTRF-GARPTVCDDDPDA----LRPHA-ERGVATVSTSDAVQQIADYALVVTSPGFRP   82 (488)
T ss_pred             cCCCeEEEEc-CCHHHHHHHHHHHHC-CCEEEEEcCCHHH----HHHHH-hCCCEEEcCcchHhHhhcCCEEEECCCCCC
Confidence            3678999999 889999999988888 8999998864322    22221 124445433322233456899999998653

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.07  E-value=0.09  Score=44.66  Aligned_cols=75  Identities=11%  Similarity=0.019  Sum_probs=49.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      .+++|+|.| -|--|...++.|.+. |.+|++.+.+..........+..  .+..+...-....+.++|.||...|+..
T Consensus         7 ~~~~v~v~G-~G~sG~~~~~~l~~~-g~~v~~~d~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~d~vV~SpgI~~   81 (468)
T PRK04690          7 EGRRVALWG-WGREGRAAYRALRAH-LPAQALTLFCNAVEAREVGALAD--AALLVETEASAQRLAAFDVVVKSPGISP   81 (468)
T ss_pred             CCCEEEEEc-cchhhHHHHHHHHHc-CCEEEEEcCCCcccchHHHHHhh--cCEEEeCCCChHHccCCCEEEECCCCCC
Confidence            578999999 588999999999999 89999988544322222222221  2233333222233457899999988653

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.04  E-value=0.0043  Score=45.65  Aligned_cols=38  Identities=21%  Similarity=0.154  Sum_probs=33.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      +.+++|.|.| .|-||+.+++.|..- |.+|.+.+|....
T Consensus        34 l~g~tvgIiG-~G~IG~~vA~~l~~f-G~~V~~~d~~~~~   71 (178)
T PF02826_consen   34 LRGKTVGIIG-YGRIGRAVARRLKAF-GMRVIGYDRSPKP   71 (178)
T ss_dssp             STTSEEEEES-TSHHHHHHHHHHHHT-T-EEEEEESSCHH
T ss_pred             cCCCEEEEEE-EcCCcCeEeeeeecC-CceeEEecccCCh
Confidence            4789999999 899999999999998 8999999986553

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.04  E-value=0.037  Score=44.37  Aligned_cols=104  Identities=11%  Similarity=0.073  Sum_probs=60.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCC---eEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKN---EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~---~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      .+|.| |+||-+|+.+.+.|.++ ..   ++.++.....-....+.  +  .+-.+..-++.+..+.++|++|. +|.. 
T Consensus         4 ~~iAi-GATg~VG~~~l~~Leer-~fpv~~l~l~~s~~~s~gk~i~--f--~g~~~~V~~l~~~~f~~vDia~f-ag~~-   75 (322)
T PRK06901          4 LNIAI-AAEFELSEKLLEALEQS-DLEIEQISIVEIEPFGEEQGIR--F--NNKAVEQIAPEEVEWADFNYVFF-AGKM-   75 (322)
T ss_pred             ceEEE-ecCcHHHHHHHHHHHhc-CCchhheeecccccccCCCEEE--E--CCEEEEEEECCccCcccCCEEEE-cCHH-
Confidence            57999 99999999999999888 43   34443322011111111  1  12233334666667789999998 7521 


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCCCCC
Q 029656          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDE  161 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~~~e  161 (190)
                                       ........+.+.|+.+|=-||..=+.++-+..+.|
T Consensus        76 -----------------~s~~~ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPE  110 (322)
T PRK06901         76 -----------------AQAEHLAQAAEAGCIVIDLYGICAALANVPVVVPS  110 (322)
T ss_pred             -----------------HHHHHHHHHHHCCCEEEECChHhhCCCCCCeeccc
Confidence                             12345556777787777666655444433333333

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.01  E-value=0.012  Score=49.24  Aligned_cols=75  Identities=16%  Similarity=0.294  Sum_probs=48.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      ..+++++|.| +|.+|..+++.|...+..+|++..|+.+........+    +...+..+-......+.|+||.+.+...
T Consensus       178 l~~~~VlViG-aG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~----g~~~i~~~~l~~~l~~aDvVi~aT~s~~  252 (417)
T TIGR01035       178 LKGKKALLIG-AGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKEL----GGEAVKFEDLEEYLAEADIVISSTGAPH  252 (417)
T ss_pred             ccCCEEEEEC-ChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc----CCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence            4679999999 5999999999999983378999988654332222221    1122222211233457999999976443

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=96.00  E-value=0.051  Score=34.86  Aligned_cols=35  Identities=20%  Similarity=0.421  Sum_probs=29.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      +.+++++|.|. |.+|+.++..|.+.++.++.+.+|
T Consensus        21 ~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          21 LKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence            46789999995 999999999999985567777655

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PLN00203 glutamyl-tRNA reductase

Probab=95.95  E-value=0.016  Score=49.70  Aligned_cols=79  Identities=19%  Similarity=0.269  Sum_probs=50.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      +.+++|+|.|+ |-+|..+++.|...+-.+|+++.|+.+........+ +...+.+...+-......+.|+||.+.+...
T Consensus       264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~-~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~  341 (519)
T PLN00203        264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF-PDVEIIYKPLDEMLACAAEADVVFTSTSSET  341 (519)
T ss_pred             CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh-CCCceEeecHhhHHHHHhcCCEEEEccCCCC
Confidence            35799999995 999999999999983357999988655443332222 1112222222222234567999999876444


Q ss_pred             C
Q 029656          110 P  110 (190)
Q Consensus       110 ~  110 (190)
                      +
T Consensus       342 p  342 (519)
T PLN00203        342 P  342 (519)
T ss_pred             C
Confidence            3

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.95  E-value=0.015  Score=46.00  Aligned_cols=77  Identities=13%  Similarity=0.103  Sum_probs=47.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEEeccccc--cccCCcCEEEEccCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTE--PLLIEVDQIYHLACP  107 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~--~~~~~~d~vi~~ag~  107 (190)
                      .+++++|.| +|..|++++-.|++.+-.+++++.|..++.......+... ........+..+  .....+|+|||+-..
T Consensus       126 ~~k~vlilG-aGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~  204 (283)
T PRK14027        126 KLDSVVQVG-AGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM  204 (283)
T ss_pred             CCCeEEEEC-CcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence            568999999 6999999999999984468999988755444333222111 110011123221  123468999998754


Q ss_pred             C
Q 029656          108 A  108 (190)
Q Consensus       108 ~  108 (190)
                      .
T Consensus       205 G  205 (283)
T PRK14027        205 G  205 (283)
T ss_pred             C
Confidence            3

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.94  E-value=0.039  Score=43.86  Aligned_cols=38  Identities=8%  Similarity=0.045  Sum_probs=30.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ..+++++|.|+ |..+++++..|+..+-.++.++.|+.+
T Consensus       122 ~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        122 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            36789999995 666999999999984468999999753

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=95.90  E-value=0.12  Score=40.49  Aligned_cols=32  Identities=22%  Similarity=0.455  Sum_probs=27.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~   64 (190)
                      ++|.|.|++|.+|+.+++.+.+..+.++....
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~   33 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAF   33 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEE
Confidence            68999999999999999999987566666543

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=95.85  E-value=0.076  Score=41.65  Aligned_cols=71  Identities=20%  Similarity=0.178  Sum_probs=41.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      |++|.|.| .|.||+.+++.|.+..+.++..+...... .......... .+.. ..|+.+. ..++|+|+-|++.
T Consensus         1 m~rVgIiG-~G~iG~~~~~~l~~~~~~~l~~v~~~~~~-~~~~~~~~~~-~~~~-~~d~~~l-~~~~DvVve~t~~   71 (265)
T PRK13303          1 MMKVAMIG-FGAIGAAVLELLEHDPDLRVDWVIVPEHS-IDAVRRALGE-AVRV-VSSVDAL-PQRPDLVVECAGH   71 (265)
T ss_pred             CcEEEEEC-CCHHHHHHHHHHhhCCCceEEEEEEcCCC-HHHHhhhhcc-CCee-eCCHHHh-ccCCCEEEECCCH
Confidence            36899999 59999999999988745555554422221 1111111111 2222 2344333 4568999999864

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.84  E-value=0.082  Score=40.36  Aligned_cols=70  Identities=10%  Similarity=0.161  Sum_probs=53.2

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      ++++|+|.| +|-++..=++.|++. +.+|+++...   ....+..+.....+.+.+-+.....+.+.+.||-+.
T Consensus        24 ~~~~VLVVG-GG~VA~RK~~~Ll~~-gA~VtVVap~---i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaAT   93 (223)
T PRK05562         24 NKIKVLIIG-GGKAAFIKGKTFLKK-GCYVYILSKK---FSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIAT   93 (223)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEcCC---CCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECC
Confidence            578999999 799999999999998 8899998643   223344455566889988777666667777777664

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.84  E-value=0.017  Score=37.64  Aligned_cols=65  Identities=23%  Similarity=0.266  Sum_probs=40.5

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCC---CeEEEE-cCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEK---NEVIVV-DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~---~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |+.|+| +|-+|..+++.|++. +   ++|.+. .|+++.......    .-.+.....|.. +.....|+||.+.
T Consensus         1 kI~iIG-~G~mg~al~~~l~~~-g~~~~~v~~~~~r~~~~~~~~~~----~~~~~~~~~~~~-~~~~~advvilav   69 (96)
T PF03807_consen    1 KIGIIG-AGNMGSALARGLLAS-GIKPHEVIIVSSRSPEKAAELAK----EYGVQATADDNE-EAAQEADVVILAV   69 (96)
T ss_dssp             EEEEES-TSHHHHHHHHHHHHT-TS-GGEEEEEEESSHHHHHHHHH----HCTTEEESEEHH-HHHHHTSEEEE-S
T ss_pred             CEEEEC-CCHHHHHHHHHHHHC-CCCceeEEeeccCcHHHHHHHHH----hhccccccCChH-HhhccCCEEEEEE
Confidence            577886 999999999999999 7   888855 664443322222    112333322222 2334689999887

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.83  E-value=0.1  Score=39.53  Aligned_cols=70  Identities=19%  Similarity=0.267  Sum_probs=50.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEc
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~  104 (190)
                      +.+++|+|.| +|-+|..=++.|++. |.+|+++....   ...+..+....++.++..+.......+.+.||-+
T Consensus        10 l~~k~VlvvG-gG~va~rKa~~ll~~-ga~v~Vvs~~~---~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaA   79 (210)
T COG1648          10 LEGKKVLVVG-GGSVALRKARLLLKA-GADVTVVSPEF---EPELKALIEEGKIKWIEREFDAEDLDDAFLVIAA   79 (210)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHhc-CCEEEEEcCCc---cHHHHHHHHhcCcchhhcccChhhhcCceEEEEe
Confidence            4789999999 899999999999999 88999987654   4555666666677777644433344444544433

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=95.80  E-value=0.018  Score=48.28  Aligned_cols=75  Identities=23%  Similarity=0.302  Sum_probs=47.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      ..+++++|+| +|-+|..+++.|...+..+|++..|+..........+ +   ...+..+-......+.|+||.+.+...
T Consensus       180 ~~~~~vlViG-aG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~-g---~~~~~~~~~~~~l~~aDvVI~aT~s~~  254 (423)
T PRK00045        180 LSGKKVLVIG-AGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF-G---GEAIPLDELPEALAEADIVISSTGAPH  254 (423)
T ss_pred             ccCCEEEEEC-chHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc-C---CcEeeHHHHHHHhccCCEEEECCCCCC
Confidence            4679999999 6999999999999883248888888654433222221 1   122221111223457899999986443

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=95.79  E-value=0.19  Score=42.18  Aligned_cols=101  Identities=16%  Similarity=0.151  Sum_probs=62.2

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCC-----CeEEEEcCCCCCChhhh----------------------hhhhcCCceEEE
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEK-----NEVIVVDNYFTGSKDNL----------------------RKWIGHPRFELI   86 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~-----~~v~~~~r~~~~~~~~~----------------------~~~~~~~~~~~~   86 (190)
                      +|+|.| .|.||.++++.|+..|-     .++.+++.+.-...+.-                      ..+-+..++..+
T Consensus         1 kVlvVG-aGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~   79 (435)
T cd01490           1 KVFLVG-AGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL   79 (435)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence            588999 89999999999999943     47888766532221111                      111112344555


Q ss_pred             eccccc--------cccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029656           87 RHDVTE--------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        87 ~~D~~~--------~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ...+..        .-+.++|+||++.-                 |..+-..+-+.|...++.+|..++.+.+|
T Consensus        80 ~~~v~~~~~~~~~~~f~~~~DvVi~alD-----------------n~~aR~~vn~~C~~~~iPli~~gt~G~~G  136 (435)
T cd01490          80 QNRVGPETEHIFNDEFWEKLDGVANALD-----------------NVDARMYVDRRCVYYRKPLLESGTLGTKG  136 (435)
T ss_pred             ecccChhhhhhhhHHHhcCCCEEEECCC-----------------CHHHHHHHHHHHHHhCCCEEEEeccccee
Confidence            443321        11346888888752                 12222356678888888888888766555

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1

Probab=95.76  E-value=0.16  Score=42.66  Aligned_cols=106  Identities=10%  Similarity=0.117  Sum_probs=64.1

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh----------------------hhhhhhcCCceEEEe
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD----------------------NLRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~----------------------~~~~~~~~~~~~~~~   87 (190)
                      +...+|+|.| .|.+|.++++.|+..|=..+++++...-...+                      .+.++-+...+.++.
T Consensus        18 L~~s~VlliG-~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~   96 (425)
T cd01493          18 LESAHVCLLN-ATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVE   96 (425)
T ss_pred             HhhCeEEEEc-CcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence            3668999999 66699999999999943677777654221111                      011111123344444


Q ss_pred             ccccc------cccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCC
Q 029656           88 HDVTE------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD  153 (190)
Q Consensus        88 ~D~~~------~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~  153 (190)
                      -++.+      .-+.++|+||.+-.         +.        .....+.+.|.+.++.+|+++|.+.||.
T Consensus        97 e~~~~ll~~~~~f~~~fdiVI~t~~---------~~--------~~~~~L~~~c~~~~iPlI~~~s~G~~G~  151 (425)
T cd01493          97 ESPEALLDNDPSFFSQFTVVIATNL---------PE--------STLLRLADVLWSANIPLLYVRSYGLYGY  151 (425)
T ss_pred             cccchhhhhHHHHhcCCCEEEECCC---------CH--------HHHHHHHHHHHHcCCCEEEEecccCEEE
Confidence            33321      11346788875421         11        1123466888999999999999888773

APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=95.75  E-value=0.049  Score=39.42  Aligned_cols=39  Identities=15%  Similarity=0.265  Sum_probs=30.2

Q ss_pred             cccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029656           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        28 ~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ..+.||+++|.|.+..+|+.++..|.++ +..|.+.....
T Consensus        32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~-~atVt~~h~~T   70 (160)
T PF02882_consen   32 IDLEGKKVVVVGRSNIVGKPLAMLLLNK-GATVTICHSKT   70 (160)
T ss_dssp             -STTT-EEEEE-TTTTTHHHHHHHHHHT-T-EEEEE-TTS
T ss_pred             CCCCCCEEEEECCcCCCChHHHHHHHhC-CCeEEeccCCC
Confidence            3468999999999999999999999999 88888876543

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.74  E-value=0.11  Score=44.06  Aligned_cols=72  Identities=15%  Similarity=0.092  Sum_probs=48.4

Q ss_pred             CCCEEEEEcccchHHHH-HHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029656           31 SNMRILVTGGAGFIGSH-LVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~-l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      .+++|+|.| -|..|.. +++.|.++ |++|++.+.+....   ...+. ..++.+.... ....+.++|.||...|+..
T Consensus         6 ~~~~v~viG-~G~sG~s~~a~~L~~~-G~~V~~~D~~~~~~---~~~l~-~~gi~~~~~~-~~~~~~~~d~vv~spgi~~   78 (461)
T PRK00421          6 RIKRIHFVG-IGGIGMSGLAEVLLNL-GYKVSGSDLKESAV---TQRLL-ELGAIIFIGH-DAENIKDADVVVYSSAIPD   78 (461)
T ss_pred             CCCEEEEEE-EchhhHHHHHHHHHhC-CCeEEEECCCCChH---HHHHH-HCCCEEeCCC-CHHHCCCCCEEEECCCCCC
Confidence            568899999 6679999 79999998 89999998765432   22222 2245554322 2233447899999988643

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.72  E-value=0.038  Score=34.79  Aligned_cols=35  Identities=34%  Similarity=0.510  Sum_probs=31.0

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCC
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      +++|.| +|++|-.++..|... +.+|+++.|.+...
T Consensus         1 ~vvViG-gG~ig~E~A~~l~~~-g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIG-GGFIGIELAEALAEL-GKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEES-SSHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred             CEEEEC-cCHHHHHHHHHHHHh-CcEEEEEeccchhh
Confidence            578888 899999999999998 89999998877655

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=95.71  E-value=0.0076  Score=43.55  Aligned_cols=72  Identities=19%  Similarity=0.237  Sum_probs=42.0

Q ss_pred             ccccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029656           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        27 ~~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      ..++.+|+++|+| -|++|+.+++.|... |..|++...++...   ++...  ..+...  + .++.....|++|.+-|
T Consensus        18 ~~~l~Gk~vvV~G-YG~vG~g~A~~lr~~-Ga~V~V~e~DPi~a---lqA~~--dGf~v~--~-~~~a~~~adi~vtaTG   87 (162)
T PF00670_consen   18 NLMLAGKRVVVIG-YGKVGKGIARALRGL-GARVTVTEIDPIRA---LQAAM--DGFEVM--T-LEEALRDADIFVTATG   87 (162)
T ss_dssp             -S--TTSEEEEE---SHHHHHHHHHHHHT-T-EEEEE-SSHHHH---HHHHH--TT-EEE----HHHHTTT-SEEEE-SS
T ss_pred             ceeeCCCEEEEeC-CCcccHHHHHHHhhC-CCEEEEEECChHHH---HHhhh--cCcEec--C-HHHHHhhCCEEEECCC
Confidence            4456899999999 999999999999999 89999987744222   21111  233332  1 2334566788888776


Q ss_pred             CC
Q 029656          107 PA  108 (190)
Q Consensus       107 ~~  108 (190)
                      ..
T Consensus        88 ~~   89 (162)
T PF00670_consen   88 NK   89 (162)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.65  E-value=0.032  Score=40.32  Aligned_cols=65  Identities=22%  Similarity=0.191  Sum_probs=40.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |++|.+.| .|-+|+.+++.|++. +++|.+.+|+++..    ..+... ....  +|-..+...++|+||-+.
T Consensus         1 m~~Ig~IG-lG~mG~~~a~~L~~~-g~~v~~~d~~~~~~----~~~~~~-g~~~--~~s~~e~~~~~dvvi~~v   65 (163)
T PF03446_consen    1 MMKIGFIG-LGNMGSAMARNLAKA-GYEVTVYDRSPEKA----EALAEA-GAEV--ADSPAEAAEQADVVILCV   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHT-TTEEEEEESSHHHH----HHHHHT-TEEE--ESSHHHHHHHBSEEEE-S
T ss_pred             CCEEEEEc-hHHHHHHHHHHHHhc-CCeEEeeccchhhh----hhhHHh-hhhh--hhhhhhHhhcccceEeec
Confidence            57899999 899999999999999 89999998854332    222222 2222  222223334567777665

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.62  E-value=0.04  Score=43.89  Aligned_cols=39  Identities=21%  Similarity=0.276  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      .+.|++|.|.|.+|.+|+.++..|+++ |+.|++..|+..
T Consensus       156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~-gatVtv~~~~t~  194 (301)
T PRK14194        156 DLTGKHAVVIGRSNIVGKPMAALLLQA-HCSVTVVHSRST  194 (301)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHC-CCEEEEECCCCC
Confidence            458999999999999999999999999 899999866543

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.57  E-value=0.026  Score=47.15  Aligned_cols=67  Identities=16%  Similarity=0.111  Sum_probs=45.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +.+++++|+| .|.||+.+++.|... |.+|+++.+++........     .++...  ++ ++...+.|+||.+.|
T Consensus       210 l~Gk~VlViG-~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ra~~A~~-----~G~~v~--~l-~eal~~aDVVI~aTG  276 (425)
T PRK05476        210 IAGKVVVVAG-YGDVGKGCAQRLRGL-GARVIVTEVDPICALQAAM-----DGFRVM--TM-EEAAELGDIFVTATG  276 (425)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHhC-CCEEEEEcCCchhhHHHHh-----cCCEec--CH-HHHHhCCCEEEECCC
Confidence            5789999999 799999999999999 7899998876543221111     122221  22 233457888888765

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=95.49  E-value=0.06  Score=45.64  Aligned_cols=71  Identities=17%  Similarity=0.217  Sum_probs=47.8

Q ss_pred             cCCCEEEEEcc----------------cchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccc--
Q 029656           30 QSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT--   91 (190)
Q Consensus        30 ~~~~~vlItG~----------------~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~--   91 (190)
                      +.|++|+||+|                ||-.|.+|++.+..+ |++|+++.-.....        ....+..+..+-.  
T Consensus       254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~-GA~VtlI~Gp~~~~--------~p~~v~~i~V~ta~e  324 (475)
T PRK13982        254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAA-GAEVTLISGPVDLA--------DPQGVKVIHVESARQ  324 (475)
T ss_pred             cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHC-CCcEEEEeCCcCCC--------CCCCceEEEecCHHH
Confidence            58999999975                799999999999999 89998885321110        1223444433222  


Q ss_pred             --ccc--cCCcCEEEEccCCCC
Q 029656           92 --EPL--LIEVDQIYHLACPAS  109 (190)
Q Consensus        92 --~~~--~~~~d~vi~~ag~~~  109 (190)
                        +..  ....|++|++|++.+
T Consensus       325 M~~av~~~~~~Di~I~aAAVaD  346 (475)
T PRK13982        325 MLAAVEAALPADIAIFAAAVAD  346 (475)
T ss_pred             HHHHHHhhCCCCEEEEeccccc
Confidence              211  124799999998765

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.47  E-value=0.13  Score=42.41  Aligned_cols=33  Identities=36%  Similarity=0.425  Sum_probs=30.1

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      |+|.|.| +||+|...+--|++. ||+|++++..+
T Consensus         1 MkI~viG-tGYVGLv~g~~lA~~-GHeVv~vDid~   33 (414)
T COG1004           1 MKITVIG-TGYVGLVTGACLAEL-GHEVVCVDIDE   33 (414)
T ss_pred             CceEEEC-CchHHHHHHHHHHHc-CCeEEEEeCCH
Confidence            6899999 999999999999999 89999998753

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.41  E-value=0.062  Score=42.53  Aligned_cols=37  Identities=16%  Similarity=0.283  Sum_probs=32.6

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      .+.|++++|.|.+..+|+-++..|+++ +..|+++-++
T Consensus       156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~-~atVtv~hs~  192 (285)
T PRK10792        156 DTYGLNAVVVGASNIVGRPMSLELLLA-GCTVTVCHRF  192 (285)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHC-CCeEEEEECC
Confidence            358999999999999999999999998 7888887654

>PRK08291 ectoine utilization protein EutC; Validated

Probab=95.36  E-value=0.051  Score=44.00  Aligned_cols=76  Identities=14%  Similarity=0.017  Sum_probs=48.8

Q ss_pred             CCEEEEEcccchHHHHHHHHHHh-cCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~-~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      .++++|.| +|..|++.+..|.. .+..+|.+..|+.+........+.....+.+...+-.+....+.|+||++....
T Consensus       132 ~~~v~IiG-aG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~  208 (330)
T PRK08291        132 ASRAAVIG-AGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE  208 (330)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC
Confidence            47899999 78889999898886 434789999987665555444332222333333332233445789998887543

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=95.35  E-value=0.099  Score=41.56  Aligned_cols=37  Identities=27%  Similarity=0.310  Sum_probs=32.0

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ..+.+++|+|++|.+|..+++.+... |..|+++.+++
T Consensus       161 ~~~~~vlI~ga~g~vG~~~~~~a~~~-g~~v~~~~~~~  197 (332)
T cd08259         161 KKGDTVLVTGAGGGVGIHAIQLAKAL-GARVIAVTRSP  197 (332)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEeCCH
Confidence            35789999999999999999999998 78888887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism]

Probab=95.34  E-value=0.012  Score=44.85  Aligned_cols=121  Identities=12%  Similarity=0.007  Sum_probs=76.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHH-----hc---CCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLM-----EN---EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIY  102 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~-----~~---~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi  102 (190)
                      ++++.++-+++|+|+..|.....     +-   ..|.|+++.|.+...           +++|-..|..-.. ..|+..+
T Consensus        11 ~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~~-----------ritw~el~~~Gip-~sc~a~v   78 (315)
T KOG3019|consen   11 KSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGKA-----------RITWPELDFPGIP-ISCVAGV   78 (315)
T ss_pred             ccccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCCc-----------ccccchhcCCCCc-eehHHHH
Confidence            44667788899999988776332     21   137899999865543           4455444433211 1355555


Q ss_pred             EccCCC----CCcccccCchhHHHHHHHHHHHHHHHHHHcCC---eEEEEecceecCCCCCCCCCCCC
Q 029656          103 HLACPA----SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTSTSEVYGDPLVHPQDESY  163 (190)
Q Consensus       103 ~~ag~~----~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~i~vSS~~~~~~~~~~~~~e~~  163 (190)
                      |.+|..    -..|+++-..+++.-.+..+..++++..+.+.   ..|++|...+|-+.....|+|++
T Consensus        79 na~g~n~l~P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~y~pS~s~eY~e~~  146 (315)
T KOG3019|consen   79 NAVGNNALLPIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAVYVPSESQEYSEKI  146 (315)
T ss_pred             hhhhhhccCchhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEEecccccccccccc
Confidence            555422    12333333334455556667888888887762   59999999999988888899984

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=95.32  E-value=0.058  Score=45.96  Aligned_cols=70  Identities=14%  Similarity=0.180  Sum_probs=45.3

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEe-ccccccccCCcCEEEEccCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR-HDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~d~vi~~ag~  107 (190)
                      +.+++++|+| +|.+|+.++..|.+. |.+|.+..|+.+........ ..   ..... .++.  ...++|+||++...
T Consensus       330 ~~~k~vlIiG-aGgiG~aia~~L~~~-G~~V~i~~R~~~~~~~la~~-~~---~~~~~~~~~~--~l~~~DiVInatP~  400 (477)
T PRK09310        330 LNNQHVAIVG-AGGAAKAIATTLARA-GAELLIFNRTKAHAEALASR-CQ---GKAFPLESLP--ELHRIDIIINCLPP  400 (477)
T ss_pred             cCCCEEEEEc-CcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHH-hc---cceechhHhc--ccCCCCEEEEcCCC
Confidence            4678999999 589999999999998 77888888754332222111 11   11111 1111  23578999999754

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.31  E-value=0.094  Score=37.07  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      .++|++++|.|.+.-+|+.++..|.++ +..|.+..++
T Consensus        25 ~~~gk~v~VvGrs~~vG~pla~lL~~~-gatV~~~~~~   61 (140)
T cd05212          25 RLDGKKVLVVGRSGIVGAPLQCLLQRD-GATVYSCDWK   61 (140)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC-CCEEEEeCCC
Confidence            358999999999999999999999998 8899888654

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=95.26  E-value=0.07  Score=42.09  Aligned_cols=65  Identities=23%  Similarity=0.219  Sum_probs=41.7

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEcc
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |+|.|.| .|.+|..++..|.+. |++|.+.+|+.+....    ......+.....+.  ....++|+||-+.
T Consensus         1 m~I~IIG-~G~mG~sla~~L~~~-g~~V~~~d~~~~~~~~----a~~~g~~~~~~~~~--~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVG-LGLIGGSLGLDLRSL-GHTVYGVSRRESTCER----AIERGLVDEASTDL--SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEe-ecHHHHHHHHHHHHC-CCEEEEEECCHHHHHH----HHHCCCcccccCCH--hHhcCCCEEEEcC
Confidence            4799999 899999999999998 8899999885433221    11111111111111  1345688888876

>cd08293 PTGR2 Prostaglandin reductase

Probab=95.26  E-value=0.023  Score=45.79  Aligned_cols=34  Identities=21%  Similarity=0.047  Sum_probs=29.3

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCC-eEEEEcCCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~-~v~~~~r~~   67 (190)
                      .+|+|.|++|.+|..+++.+... |. +|+++.++.
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~-G~~~Vi~~~~s~  190 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLL-GCSRVVGICGSD  190 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHc-CCCEEEEEcCCH
Confidence            79999999999999999988887 76 788887643

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=95.25  E-value=0.059  Score=44.97  Aligned_cols=68  Identities=18%  Similarity=0.163  Sum_probs=46.2

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      .+.+++|+|.| .|.||+.+++.+... |.+|+++.+++...... ..    .++...  ++ ++...+.|+||.+.|
T Consensus       199 ~l~GktVvViG-~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A-~~----~G~~~~--~~-~e~v~~aDVVI~atG  266 (413)
T cd00401         199 MIAGKVAVVAG-YGDVGKGCAQSLRGQ-GARVIVTEVDPICALQA-AM----EGYEVM--TM-EEAVKEGDIFVTTTG  266 (413)
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECChhhHHHH-Hh----cCCEEc--cH-HHHHcCCCEEEECCC
Confidence            35789999999 899999999999998 77898887754432211 11    122222  22 233456899998876

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.24  E-value=0.18  Score=33.87  Aligned_cols=64  Identities=25%  Similarity=0.409  Sum_probs=45.8

Q ss_pred             EEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccccc------CCcCEEEEcc
Q 029656           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLA  105 (190)
Q Consensus        35 vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------~~~d~vi~~a  105 (190)
                      |+|.| .|-+|+.+++.|.+. +..|.++.++++.    ...+. ...+.++.+|..+...      .+.+.||-+.
T Consensus         1 vvI~G-~g~~~~~i~~~L~~~-~~~vvvid~d~~~----~~~~~-~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~   70 (116)
T PF02254_consen    1 VVIIG-YGRIGREIAEQLKEG-GIDVVVIDRDPER----VEELR-EEGVEVIYGDATDPEVLERAGIEKADAVVILT   70 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHT-TSEEEEEESSHHH----HHHHH-HTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred             eEEEc-CCHHHHHHHHHHHhC-CCEEEEEECCcHH----HHHHH-hcccccccccchhhhHHhhcCccccCEEEEcc
Confidence            57888 689999999999996 7789999875433    22222 2247899999998743      4688887776

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=95.24  E-value=0.092  Score=41.16  Aligned_cols=67  Identities=18%  Similarity=0.294  Sum_probs=39.0

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcC-CCeEE-EEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENE-KNEVI-VVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~-~~~v~-~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +++.|.| .|.+|+.+++.|.+.+ +.++. +.+|+.+.    ...+........+ .|+.+ ...++|+|+.|+.
T Consensus         2 mrIgIIG-~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~----a~~~a~~~~~~~~-~~~~e-ll~~~DvVvi~a~   70 (265)
T PRK13304          2 LKIGIVG-CGAIASLITKAILSGRINAELYAFYDRNLEK----AENLASKTGAKAC-LSIDE-LVEDVDLVVECAS   70 (265)
T ss_pred             CEEEEEC-ccHHHHHHHHHHHcCCCCeEEEEEECCCHHH----HHHHHHhcCCeeE-CCHHH-HhcCCCEEEEcCC
Confidence            6899999 7999999999998863 34544 44443222    1111111112211 23222 2257999999875

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.18  E-value=0.078  Score=41.97  Aligned_cols=36  Identities=14%  Similarity=0.238  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      .+.|++++|.|.+..+|+-++..|.++ +..|+++..
T Consensus       161 ~l~Gk~vvViGrs~iVGkPla~lL~~~-~atVtv~hs  196 (287)
T PRK14176        161 DIEGKNAVIVGHSNVVGKPMAAMLLNR-NATVSVCHV  196 (287)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHC-CCEEEEEec
Confidence            358999999999999999999999998 788888754

>PRK08818 prephenate dehydrogenase; Provisional

Probab=95.18  E-value=0.067  Score=44.00  Aligned_cols=36  Identities=28%  Similarity=0.230  Sum_probs=30.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      ..++|+|.|.+|.||.++++.|.+..+++|++.++.
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~   38 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPA   38 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence            347899999889999999999997647888888774

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=95.18  E-value=0.06  Score=43.52  Aligned_cols=75  Identities=8%  Similarity=0.015  Sum_probs=49.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHh-cCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~-~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~  107 (190)
                      .++++|+| +|..|++.++.|+. .+-.+|.+..|+.+........+.....+.+...+-..+...+.|+||++-..
T Consensus       129 ~~~v~iiG-aG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s  204 (326)
T TIGR02992       129 SSVVAIFG-AGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPS  204 (326)
T ss_pred             CcEEEEEC-CCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCC
Confidence            46899999 89999999999975 42368999999776655544443222123333333223344678999988754

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.16  E-value=0.051  Score=43.91  Aligned_cols=76  Identities=12%  Similarity=0.108  Sum_probs=48.2

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhc-CCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~-~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      .++++|+| +|.+|+..+..++.. +-.+|.+.+|+.+........+.....+.....+-.++...+.|+||++-...
T Consensus       127 ~~~v~iiG-aG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~  203 (325)
T PRK08618        127 AKTLCLIG-TGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK  203 (325)
T ss_pred             CcEEEEEC-CcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC
Confidence            47899999 899999988887653 23689999887665554444332222233322322233446789999887543

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=95.16  E-value=0.25  Score=38.13  Aligned_cols=35  Identities=23%  Similarity=0.364  Sum_probs=29.4

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      +..+|+|.| -|.+|+|.+++|++.|=.++.+++..
T Consensus        29 ~~~~V~VvG-iGGVGSw~veALaRsGig~itlID~D   63 (263)
T COG1179          29 KQAHVCVVG-IGGVGSWAVEALARSGIGRITLIDMD   63 (263)
T ss_pred             hhCcEEEEe-cCchhHHHHHHHHHcCCCeEEEEecc
Confidence            568899999 89999999999999943677777654

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.13  E-value=0.12  Score=41.22  Aligned_cols=97  Identities=14%  Similarity=0.230  Sum_probs=57.3

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChh-hhhhhhcCCceEEEecccc----ccccCCcCEEEEcc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-NLRKWIGHPRFELIRHDVT----EPLLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~-~~~~~~~~~~~~~~~~D~~----~~~~~~~d~vi~~a  105 (190)
                      +..++.|.| +|.||..++..+.+..+.++..+...+..... .....   .++.....|+.    +..+.++|+||.+.
T Consensus         3 ~klrVAIIG-tG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~---~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT   78 (302)
T PRK08300          3 SKLKVAIIG-SGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARR---LGVATSAEGIDGLLAMPEFDDIDIVFDAT   78 (302)
T ss_pred             CCCeEEEEc-CcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHH---cCCCcccCCHHHHHhCcCCCCCCEEEECC
Confidence            457899999 99999999988887645666655433322211 11111   12222211211    22346799999887


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      +..                  ........+.+.|+++|--+++.
T Consensus        79 ~a~------------------~H~e~a~~a~eaGk~VID~sPA~  104 (302)
T PRK08300         79 SAG------------------AHVRHAAKLREAGIRAIDLTPAA  104 (302)
T ss_pred             CHH------------------HHHHHHHHHHHcCCeEEECCccc
Confidence            521                  12345666777787777766655

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.12  E-value=0.085  Score=42.41  Aligned_cols=65  Identities=14%  Similarity=0.155  Sum_probs=44.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceE-EEeccccccccCCcCEEEEccC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFE-LIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +.++++.|.| .|.||+.+++.|... |.+|.+.+|..+...          .+. +...+-.++.+.++|+|+.+..
T Consensus       134 l~g~tvgIvG-~G~IG~~vA~~l~af-G~~V~~~~~~~~~~~----------~~~~~~~~~~l~e~l~~aDvvv~~lP  199 (312)
T PRK15469        134 REDFTIGILG-AGVLGSKVAQSLQTW-GFPLRCWSRSRKSWP----------GVQSFAGREELSAFLSQTRVLINLLP  199 (312)
T ss_pred             cCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCCCCCC----------CceeecccccHHHHHhcCCEEEECCC
Confidence            4789999999 999999999999988 899999887543211          111 1112222334457888877763

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.10  E-value=0.039  Score=40.88  Aligned_cols=33  Identities=39%  Similarity=0.524  Sum_probs=26.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      |+|.|.| .||+|..++..|++. |++|++++.++
T Consensus         1 M~I~ViG-lGyvGl~~A~~lA~~-G~~V~g~D~~~   33 (185)
T PF03721_consen    1 MKIAVIG-LGYVGLPLAAALAEK-GHQVIGVDIDE   33 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHT-TSEEEEE-S-H
T ss_pred             CEEEEEC-CCcchHHHHHHHHhC-CCEEEEEeCCh
Confidence            7899998 999999999999999 89999998753

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=95.09  E-value=0.077  Score=44.14  Aligned_cols=75  Identities=17%  Similarity=0.270  Sum_probs=55.2

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~~  109 (190)
                      +.+++++|.| .|-+|.-+++.|..++-..|++..|..+.......++    +...+..|-........|+||-+-|...
T Consensus       176 L~~~~vlvIG-AGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~----~~~~~~l~el~~~l~~~DvVissTsa~~  250 (414)
T COG0373         176 LKDKKVLVIG-AGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKL----GAEAVALEELLEALAEADVVISSTSAPH  250 (414)
T ss_pred             cccCeEEEEc-ccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHh----CCeeecHHHHHHhhhhCCEEEEecCCCc
Confidence            4789999999 8999999999999994488999988665544433332    3455555555556678999999876444

>PLN02494 adenosylhomocysteinase

Probab=95.07  E-value=0.069  Score=45.16  Aligned_cols=40  Identities=15%  Similarity=0.135  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029656           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        28 ~~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      ..+.+++++|+| .|.||+.+++.+... |.+|+++.+++..
T Consensus       250 i~LaGKtVvViG-yG~IGr~vA~~aka~-Ga~VIV~e~dp~r  289 (477)
T PLN02494        250 VMIAGKVAVICG-YGDVGKGCAAAMKAA-GARVIVTEIDPIC  289 (477)
T ss_pred             CccCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCchh
Confidence            345789999999 899999999999988 7899998776543

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=95.07  E-value=0.065  Score=42.24  Aligned_cols=66  Identities=15%  Similarity=0.177  Sum_probs=43.3

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +++++|.| +|..+++++..|.+.+..+|.++.|+.+........+    .+.+. .++   .....|+|||+-.
T Consensus       122 ~~~vlilG-aGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~----~~~~~-~~~---~~~~~dlvINaTp  187 (272)
T PRK12550        122 DLVVALRG-SGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELY----GYEWR-PDL---GGIEADILVNVTP  187 (272)
T ss_pred             CCeEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHh----CCcch-hhc---ccccCCEEEECCc
Confidence            46899999 6999999999999984457999999765443322221    11110 011   1245899999964

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=95.07  E-value=0.34  Score=38.55  Aligned_cols=32  Identities=34%  Similarity=0.485  Sum_probs=26.8

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      +|+|.| .|.+|.++++.|+..|-.++.+++.+
T Consensus         1 kVlVVG-aGGlG~eilknLal~Gvg~I~IvD~D   32 (291)
T cd01488           1 KILVIG-AGGLGCELLKNLALSGFRNIHVIDMD   32 (291)
T ss_pred             CEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            588999 89999999999999954678887654

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=95.06  E-value=0.42  Score=38.84  Aligned_cols=98  Identities=18%  Similarity=0.247  Sum_probs=55.8

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcC-CCeEEEEcCCCCCChhhhhhhhc----------------------CCceEEEe-c
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIG----------------------HPRFELIR-H   88 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~~~~~~~~~----------------------~~~~~~~~-~   88 (190)
                      .+|.|-|. |-||+.+.+.|.+++ ..++.++.-++....+.+..++.                      ...+...+ -
T Consensus         2 ~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~   80 (336)
T PRK13535          2 IRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHER   80 (336)
T ss_pred             eEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcC
Confidence            57999998 999999999999862 13455553332222222222211                      11222321 1


Q ss_pred             ccccccc--CCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecce
Q 029656           89 DVTEPLL--IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus        89 D~~~~~~--~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~  149 (190)
                      |..+...  .++|+||-|+|...                  +...+....+.|.+.|.+|+..
T Consensus        81 ~p~~~~w~~~gvDiVle~tG~~~------------------s~~~a~~~l~aGAk~V~iSap~  125 (336)
T PRK13535         81 DIASLPWRELGVDVVLDCTGVYG------------------SREDGEAHIAAGAKKVLFSHPG  125 (336)
T ss_pred             CcccCcccccCCCEEEEccchhh------------------hHHHHHHHHHcCCEEEEecCCc
Confidence            3333323  57999999997432                  1234444555678888888764

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.05  E-value=0.18  Score=40.02  Aligned_cols=37  Identities=22%  Similarity=0.295  Sum_probs=32.4

Q ss_pred             CEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCCh
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK   71 (190)
Q Consensus        33 ~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~   71 (190)
                      ++|.|.| .|.+|..++..|+.. |++|++.+++++..+
T Consensus         6 ~~V~ViG-aG~mG~~iA~~~a~~-G~~V~l~d~~~~~~~   42 (286)
T PRK07819          6 QRVGVVG-AGQMGAGIAEVCARA-GVDVLVFETTEELAT   42 (286)
T ss_pred             cEEEEEc-ccHHHHHHHHHHHhC-CCEEEEEECCHHHHH
Confidence            5899999 699999999999999 899999998766544

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.97  E-value=0.09  Score=41.89  Aligned_cols=35  Identities=17%  Similarity=0.346  Sum_probs=32.2

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEc
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~   64 (190)
                      .+.|++|+|.|.++.+|+.++..|++. ++.|++..
T Consensus       155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~-g~tVtv~~  189 (296)
T PRK14188        155 DLSGLNAVVIGRSNLVGKPMAQLLLAA-NATVTIAH  189 (296)
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHhC-CCEEEEEC
Confidence            368999999999999999999999998 89999884

>PRK14851 hypothetical protein; Provisional

Probab=94.97  E-value=0.49  Score=42.12  Aligned_cols=102  Identities=9%  Similarity=0.029  Sum_probs=62.6

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +.+.+|+|.| .|.+|..++..|+..|-.++.+++.+.-...+.                      +.++-+..+++.+.
T Consensus        41 L~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~  119 (679)
T PRK14851         41 LAEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP  119 (679)
T ss_pred             HhcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence            3678999999 899999999999999546777765442111111                      11111223566665


Q ss_pred             ccccccc----cCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEec
Q 029656           88 HDVTEPL----LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus        88 ~D~~~~~----~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS  147 (190)
                      ..+....    +.++|+||.+.-..         .      +..-..+.+.|.+.++.+|..+.
T Consensus       120 ~~i~~~n~~~~l~~~DvVid~~D~~---------~------~~~r~~l~~~c~~~~iP~i~~g~  168 (679)
T PRK14851        120 AGINADNMDAFLDGVDVVLDGLDFF---------Q------FEIRRTLFNMAREKGIPVITAGP  168 (679)
T ss_pred             cCCChHHHHHHHhCCCEEEECCCCC---------c------HHHHHHHHHHHHHCCCCEEEeec
Confidence            5555332    35799998776210         0      11112466788888888887664

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=94.97  E-value=0.2  Score=39.45  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=56.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhc-CCCeEEEE-cCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccCCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVV-DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~-~~~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +.++|.|.| .|.||+.+++.|.+. .+.++..+ +|+.+. ...+....   .......|+.+ ...++|+|+-++...
T Consensus         5 ~~irIGIIG-~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~-a~~~a~~~---g~~~~~~~~ee-ll~~~D~Vvi~tp~~   78 (271)
T PRK13302          5 PELRVAIAG-LGAIGKAIAQALDRGLPGLTLSAVAVRDPQR-HADFIWGL---RRPPPVVPLDQ-LATHADIVVEAAPAS   78 (271)
T ss_pred             CeeEEEEEC-ccHHHHHHHHHHHhcCCCeEEEEEECCCHHH-HHHHHHhc---CCCcccCCHHH-HhcCCCEEEECCCcH
Confidence            457899999 899999999999873 46676644 443222 11111111   11111122222 234689998887532


Q ss_pred             CCccc-c---cCchhHHHHH---HHHHHHHHHHHHHcCCeEEEEe
Q 029656          109 SPIFY-K---YNPVKTIKTN---VIGTLNMLGLAKRVGARILLTS  146 (190)
Q Consensus       109 ~~~~~-~---~~~~~~~~~n---~~~~~~l~~~~~~~~~~~i~vS  146 (190)
                      ..... .   .....++...   +.-...+.+++++++.++...|
T Consensus        79 ~h~e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~s  123 (271)
T PRK13302         79 VLRAIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPT  123 (271)
T ss_pred             HHHHHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcc
Confidence            21000 0   0000011011   1124677788888887765543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.97  E-value=0.12  Score=43.53  Aligned_cols=69  Identities=20%  Similarity=0.249  Sum_probs=49.6

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccc------cCCcCEEEE
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPL------LIEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~------~~~~d~vi~  103 (190)
                      ..++++|.| .|.+|+.+++.|.+. +++|.++.++++.    ...+.. ...+..+.+|.++..      ..+.|.||-
T Consensus       230 ~~~~iiIiG-~G~~g~~l~~~L~~~-~~~v~vid~~~~~----~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~  303 (453)
T PRK09496        230 PVKRVMIVG-GGNIGYYLAKLLEKE-GYSVKLIERDPER----AEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIA  303 (453)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhC-CCeEEEEECCHHH----HHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence            468899999 599999999999998 8899999875432    222211 135677888988764      235788775


Q ss_pred             cc
Q 029656          104 LA  105 (190)
Q Consensus       104 ~a  105 (190)
                      +.
T Consensus       304 ~~  305 (453)
T PRK09496        304 LT  305 (453)
T ss_pred             CC
Confidence            54

>PRK14852 hypothetical protein; Provisional

Probab=94.96  E-value=0.45  Score=43.84  Aligned_cols=107  Identities=11%  Similarity=0.014  Sum_probs=64.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhh----------------------hhhhhcCCceEEEe
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +...+|+|.| .|.+|..++..|+..|-.++.+++.+.-...+.                      +.++-+..++..+.
T Consensus       330 L~~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~  408 (989)
T PRK14852        330 LLRSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP  408 (989)
T ss_pred             HhcCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence            3668999999 899999999999999545777765542221111                      11111123555555


Q ss_pred             cccccc----ccCCcCEEEEccCCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecC
Q 029656           88 HDVTEP----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus        88 ~D~~~~----~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~  152 (190)
                      ..+..+    -+.++|+||.+.-...               +..-..+.+.|.+.++.+|..++.+.+|
T Consensus       409 ~~I~~en~~~fl~~~DiVVDa~D~~~---------------~~~rr~l~~~c~~~~IP~I~ag~~G~~g  462 (989)
T PRK14852        409 EGVAAETIDAFLKDVDLLVDGIDFFA---------------LDIRRRLFNRALELGIPVITAGPLGYSC  462 (989)
T ss_pred             cCCCHHHHHHHhhCCCEEEECCCCcc---------------HHHHHHHHHHHHHcCCCEEEeeccccCe
Confidence            444332    2357899987762110               1112345667888888999888755333

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.94  E-value=0.4  Score=40.37  Aligned_cols=75  Identities=24%  Similarity=0.192  Sum_probs=48.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcC-CceEEEeccccccccCCcCEEEEccCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-PRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      +....|+|.| -|..|..+++.|.+. |++|.+.+......  ....+... .++.+....-....+.++|.||...|+.
T Consensus         4 ~~~~~~~v~G-~G~sG~s~a~~L~~~-G~~v~~~D~~~~~~--~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~   79 (448)
T PRK03803          4 QSDGLHIVVG-LGKTGLSVVRFLARQ-GIPFAVMDSREQPP--GLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLA   79 (448)
T ss_pred             ccCCeEEEEe-ecHhHHHHHHHHHhC-CCeEEEEeCCCCch--hHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCC
Confidence            4567899999 677999999999998 89999998754321  11122111 2455544322222345689999988764

>PRK13243 glyoxylate reductase; Reviewed

Probab=94.94  E-value=0.048  Score=44.26  Aligned_cols=66  Identities=17%  Similarity=0.069  Sum_probs=44.9

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEeccccccccCCcCEEEEccC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~ag  106 (190)
                      +.++++.|.| .|.||+.+++.|... |.+|.+.+|......  ...    ..+.+  .+ .++.+.+.|+|+.+.-
T Consensus       148 L~gktvgIiG-~G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~--~~~----~~~~~--~~-l~ell~~aDiV~l~lP  213 (333)
T PRK13243        148 VYGKTIGIIG-FGRIGQAVARRAKGF-GMRILYYSRTRKPEA--EKE----LGAEY--RP-LEELLRESDFVSLHVP  213 (333)
T ss_pred             CCCCEEEEEC-cCHHHHHHHHHHHHC-CCEEEEECCCCChhh--HHH----cCCEe--cC-HHHHHhhCCEEEEeCC
Confidence            4789999999 899999999999988 889999888543211  110    01121  12 2234567898877763

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=94.93  E-value=0.27  Score=39.12  Aligned_cols=108  Identities=12%  Similarity=-0.000  Sum_probs=64.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEe-cccccc----ccCCcCEEEEcc
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR-HDVTEP----LLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~D~~~~----~~~~~d~vi~~a  105 (190)
                      ++.+++|.||+|.+|+-+-+.-.-. |+.|+...-++++..-...++.-...+.+-. .|+...    .-.++|+-|-|.
T Consensus       153 ~geTv~VSaAsGAvGql~GQ~Ak~~-Gc~VVGsaGS~EKv~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNV  231 (343)
T KOG1196|consen  153 KGETVFVSAASGAVGQLVGQFAKLM-GCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENV  231 (343)
T ss_pred             CCCEEEEeeccchhHHHHHHHHHhc-CCEEEEecCChhhhhhhHhccCCccceeccCccCHHHHHHHhCCCcceEEEecc
Confidence            5789999999999999888877777 8888887654443322211111111111111 011110    113589999888


Q ss_pred             CCCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCCCCCC
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHP  158 (190)
Q Consensus       106 g~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~~~~~  158 (190)
                      |...                  ...++..++.++ |+++++-.+.|..+.+.+
T Consensus       232 GG~~------------------lDavl~nM~~~g-ri~~CG~ISqYN~~~~~~  265 (343)
T KOG1196|consen  232 GGKM------------------LDAVLLNMNLHG-RIAVCGMISQYNLENPEG  265 (343)
T ss_pred             CcHH------------------HHHHHHhhhhcc-ceEeeeeehhccccCCcc
Confidence            6321                  123445555555 999999988887654433

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=94.93  E-value=0.12  Score=37.44  Aligned_cols=33  Identities=33%  Similarity=0.476  Sum_probs=27.4

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      ..+|+|.||-|.+|+++++.+..+ ++-|.-++-
T Consensus         3 agrVivYGGkGALGSacv~~Fkan-nywV~siDl   35 (236)
T KOG4022|consen    3 AGRVIVYGGKGALGSACVEFFKAN-NYWVLSIDL   35 (236)
T ss_pred             CceEEEEcCcchHhHHHHHHHHhc-CeEEEEEee
Confidence            468999999999999999999998 666555544

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=94.89  E-value=0.05  Score=44.87  Aligned_cols=35  Identities=17%  Similarity=0.339  Sum_probs=31.9

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      ..++|.|.||.|.+|..+++.|.+. |+.|.+.+|+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~-G~~V~~~d~~  131 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLS-GYQVRILEQD  131 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHC-CCeEEEeCCC
Confidence            4588999999999999999999999 8999999874

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.88  E-value=0.097  Score=41.44  Aligned_cols=36  Identities=14%  Similarity=0.252  Sum_probs=31.8

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcC
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      .+.|++++|.|.++.+|+.++..|.++ +..|+++-+
T Consensus       155 ~l~Gk~vvViGrs~iVGkPla~lL~~~-~atVt~~hs  190 (285)
T PRK14189        155 PLRGAHAVVIGRSNIVGKPMAMLLLQA-GATVTICHS  190 (285)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHC-CCEEEEecC
Confidence            358999999999999999999999998 788887644

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=94.85  E-value=0.041  Score=44.33  Aligned_cols=37  Identities=11%  Similarity=0.067  Sum_probs=31.4

Q ss_pred             cCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCC
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ..+.+++|+|++|.+|..+++.+... |.+|+++.++.
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~  186 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSD  186 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCH
Confidence            46789999999999999999988888 77888877653

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.84  E-value=0.033  Score=45.85  Aligned_cols=73  Identities=14%  Similarity=0.143  Sum_probs=44.1

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecc--ccccccCCcCEEEEccCC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD--VTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D--~~~~~~~~~d~vi~~ag~  107 (190)
                      ...+++|+| .|-+|+.+++.+... |.+|++++|+...... +...... .+.....+  .......+.|+||++++.
T Consensus       166 ~~~~VlViG-aG~vG~~aa~~a~~l-Ga~V~v~d~~~~~~~~-l~~~~g~-~v~~~~~~~~~l~~~l~~aDvVI~a~~~  240 (370)
T TIGR00518       166 EPGDVTIIG-GGVVGTNAAKMANGL-GATVTILDINIDRLRQ-LDAEFGG-RIHTRYSNAYEIEDAVKRADLLIGAVLI  240 (370)
T ss_pred             CCceEEEEc-CCHHHHHHHHHHHHC-CCeEEEEECCHHHHHH-HHHhcCc-eeEeccCCHHHHHHHHccCCEEEEcccc
Confidence            446799998 589999999999999 7789999885433221 1111111 11111111  111223579999999854

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.83  E-value=0.33  Score=40.93  Aligned_cols=72  Identities=18%  Similarity=0.045  Sum_probs=46.0

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhh-hhhhcCCceEEEeccccc-----cccCCcCEEEEccCC
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWIGHPRFELIRHDVTE-----PLLIEVDQIYHLACP  107 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~-~~~~~~~~~~~~~~D~~~-----~~~~~~d~vi~~ag~  107 (190)
                      +|+|.| .|..|...++.|.+. |+.|.+.++......... ..+. ..++.+....-.+     ....++|.||...|.
T Consensus         2 ~v~viG-~G~sG~s~a~~l~~~-G~~V~~~D~~~~~~~~~~~~~l~-~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi   78 (459)
T PRK02705          2 IAHVIG-LGRSGIAAARLLKAQ-GWEVVVSDRNDSPELLERQQELE-QEGITVKLGKPLELESFQPWLDQPDLVVVSPGI   78 (459)
T ss_pred             eEEEEc-cCHHHHHHHHHHHHC-CCEEEEECCCCchhhHHHHHHHH-HcCCEEEECCccchhhhhHHhhcCCEEEECCCC
Confidence            589999 788999999999998 899999987644322211 1121 2244444322112     124568999998875


Q ss_pred             C
Q 029656          108 A  108 (190)
Q Consensus       108 ~  108 (190)
                      .
T Consensus        79 ~   79 (459)
T PRK02705         79 P   79 (459)
T ss_pred             C
Confidence            4

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=94.77  E-value=0.06  Score=45.54  Aligned_cols=38  Identities=18%  Similarity=0.190  Sum_probs=32.8

Q ss_pred             ccCCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCC
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        29 ~~~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      .+.+++++|+| .|.||+.+++.|... |.+|++..+++.
T Consensus       251 ~LaGKtVgVIG-~G~IGr~vA~rL~a~-Ga~ViV~e~dp~  288 (476)
T PTZ00075        251 MIAGKTVVVCG-YGDVGKGCAQALRGF-GARVVVTEIDPI  288 (476)
T ss_pred             CcCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEeCCch
Confidence            45899999999 889999999999998 789988876543

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=94.77  E-value=0.13  Score=40.84  Aligned_cols=104  Identities=14%  Similarity=0.104  Sum_probs=61.7

Q ss_pred             CCCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhcCCceEEEecccccc----ccCCcCEEEEccC
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP----LLIEVDQIYHLAC  106 (190)
Q Consensus        31 ~~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~----~~~~~d~vi~~ag  106 (190)
                      .|.+|+|++|+|.+|+-+.+.-.-. |++|+.+.-.+++-.-....+.-...+++-.-|+...    .-.++|+.|-|.|
T Consensus       150 ~GetvvVSaAaGaVGsvvgQiAKlk-G~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeNVG  228 (340)
T COG2130         150 AGETVVVSAAAGAVGSVVGQIAKLK-GCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVG  228 (340)
T ss_pred             CCCEEEEEecccccchHHHHHHHhh-CCeEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCeEEEEEcCC
Confidence            6789999999999999888766666 8999998654433222211111112233322333211    1246999999987


Q ss_pred             CCCCcccccCchhHHHHHHHHHHHHHHHHHHcCCeEEEEecceecCCC
Q 029656          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDP  154 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~i~vSS~~~~~~~  154 (190)
                      ...           +       ..++..+... .|+++++-++.|..+
T Consensus       229 g~v-----------~-------DAv~~~ln~~-aRi~~CG~IS~YN~~  257 (340)
T COG2130         229 GEV-----------L-------DAVLPLLNLF-ARIPVCGAISQYNAP  257 (340)
T ss_pred             chH-----------H-------HHHHHhhccc-cceeeeeehhhcCCC
Confidence            321           0       1122222221 389999998888865

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=94.75  E-value=0.12  Score=40.85  Aligned_cols=36  Identities=22%  Similarity=0.371  Sum_probs=30.0

Q ss_pred             CCEEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCC
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        32 ~~~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      .++|+|.| .|.||+++++.|... |+.+.++.++...
T Consensus         3 ~~~v~IvG-~GliG~s~a~~l~~~-g~~v~i~g~d~~~   38 (279)
T COG0287           3 SMKVGIVG-LGLMGGSLARALKEA-GLVVRIIGRDRSA   38 (279)
T ss_pred             CcEEEEEC-CchHHHHHHHHHHHc-CCeEEEEeecCcH
Confidence            46787777 999999999999999 8888888775444

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=94.75  E-value=0.38  Score=40.30  Aligned_cols=72  Identities=18%  Similarity=0.053  Sum_probs=46.2

Q ss_pred             EEEEEcccchHHHHHHHHHHhcCCCeEEEEcCCCCCChhhhhhhhc-CCceEEEeccccccccCCcCEEEEccCCC
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        34 ~vlItG~~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~d~vi~~ag~~  108 (190)
                      ++.|.| -|..|..+++.|.++ |++|.+.+............+.. ..++.+....- .....++|.||...|+.
T Consensus         1 ~~~~iG-~G~~G~a~a~~l~~~-G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~   73 (433)
T TIGR01087         1 KILILG-LGKTGRAVARFLHKK-GAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIP   73 (433)
T ss_pred             CEEEEE-eCHhHHHHHHHHHHC-CCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCC
Confidence            378888 778999999999999 89999998765433222111111 12455543311 22345689999998864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	190
4ef7_B	337	Udp-Xylose Synthase Length = 337		1e-57
2b69_A	343	Crystal Structure Of Human Udp-Glucoronic Acid Deca		3e-56
3ehe_A	313	Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-		2e-16
3icp_A	312	Crystal Structure Of Udp-Galactose 4-Epimerase Leng		7e-16
3aw9_A	308	Structure Of Udp-Galactose 4-Epimerase Mutant Lengt		4e-13
1r66_A	337	Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr		3e-12
2bll_A	345	Apo-Structure Of The C-Terminal Decarboxylase Domai		6e-12
1r6d_A	337	Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc		6e-12
1kep_A	348	The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra		2e-11
1z74_A	358	Crystal Structure Of E.Coli Arna Dehydrogenase (Dec		2e-11
1u9j_A	358	Crystal Structure Of E. Coli Arna (Pmri) Decarboxyl		2e-11
1z7b_A	358	Crystal Structure Of E.Coli Arna Dehydrogenase (Dec		2e-11
1z75_A	358	Crystal Structure Of Arna Dehydrogenase (decarboxyl		2e-11
1z7e_A	660	Crystal Structure Of Full Length Arna Length = 660		3e-11
1z73_A	358	Crystal Structure Of E. Coli Arna Dehydrogenase (de		5e-11
2hun_A	336	Crystal Structure Of Hypothetical Protein Ph0414 Fr		6e-11
4egb_A	346	3.0 Angstrom Resolution Crystal Structure Of Dtdp-G		2e-10
1g1a_A	361	The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra		2e-10
3sxp_A	362	Crystal Structure Of Helicobacter Pylori Adp-L-Glyc		3e-09
2pzk_A	330	Crystal Structure Of The Bordetella Bronchiseptica		4e-09
1kvs_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		9e-09
1bxk_A	355	Dtdp-Glucose 4,6-Dehydratase From E. Coli Length =		1e-08
1orr_A	347	Crystal Structure Of Cdp-tyvelose 2-epimerase Compl		1e-08
1kvu_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		2e-08
2udp_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		2e-08
2pzj_A	377	Crystal Structure Of The Bordetella Bronchiseptica		2e-08
1lrk_A	338	Crystal Structure Of Escherichia Coli Udp-Galactose		2e-08
1a9y_A	338	Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX		2e-08
1lrj_A	338	Crystal Structure Of E. Coli Udp-Galactose 4-Epimer		2e-08
1kvr_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		2e-08
1a9z_A	338	Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX		3e-08
1kvq_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		3e-08
1kvt_A	338	Udp-Galactose 4-Epimerase Complexed With Udp-Phenol		4e-08
3vps_A	321	Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5		4e-08
2p5u_A	311	Crystal Structure Of Thermus Thermophilus Hb8 Udp-G		5e-08
1z45_A	699	Crystal Structure Of The Gal10 Fusion Protein Galac		6e-08
1hzj_A	348	Human Udp-Galactose 4-Epimerase: Accommodation Of U		6e-08
1ek5_A	348	Structure Of Human Udp-Galactose 4-Epimerase In Com		6e-08
1i3k_A	348	Molecular Basis For Severe Epimerase-Deficiency Gal		7e-08
2pk3_A	321	Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose		9e-08
3slg_A	372	Crystal Structure Of Pbgp3 Protein From Burkholderi		1e-07
2c20_A	330	Crystal Structure Of Udp-Glucose 4-Epimerase Length		3e-07
1sb8_A	352	Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A		3e-07
3lu1_A	364	Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-		6e-07
3ruc_A	351	Specific Recognition Of N-Acetylated Substrates And		7e-07
3ru9_A	351	Specific Recognition Of N-Acetylated Substrates And		7e-07
3ru7_A	351	Specific Recognition Of N-Acetylated Substrates And		7e-07
1gy8_A	397	Trypanosoma Brucei Udp-Galactose 4' Epimerase Lengt		8e-06
2gn4_A	344	Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehyd		3e-05
2q1w_A	333	Crystal Structure Of The Bordetella Bronchiseptica		4e-05
1wvg_A	359	Structure Of Cdp-D-Glucose 4,6-Dehydratase From Sal		8e-04

>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343

Iteration: 1
 Score =  214 bits (545), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 106/153 (69%), Positives = 119/153 (77%), Gaps = 6/153 (3%)
Query: 24  RFSKFFQSNM-----RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI 78
           R + +FQ +      RIL+TGGAGF+GSHL DKL   + +EV VVDN+FTG K N+  WI
Sbjct: 14  RENLYFQGHXEKDRKRILITGGAGFVGSHLTDKLXX-DGHEVTVVDNFFTGRKRNVEHWI 72
Query: 79  GHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
           GH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLN LGLAKRV
Sbjct: 73  GHENFELINHDVVEPLYIEVDQIYHLASPASPPNYXYNPIKTLKTNTIGTLNXLGLAKRV 132
Query: 139 GARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
           GAR+LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct: 133 GARLLLASTSEVYGDPEVHPQSEDYWGHVNPIG 165

>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 83/140 (59%), Gaps = 6/140 (4%)
Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           I+VTGGAGFIGSH+VDKL  +E NE++V+DN  +G+++ + +     + +L   D+ +  
Sbjct: 4   IVVTGGAGFIGSHVVDKL--SESNEIVVIDNLSSGNEEFVNEAARLVKADLAADDIKD-Y 60
Query: 95  LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGD 153
           L   ++++H+A          NP +  + NV+ T  +L   ++ G +RI+ TSTS VYG+
Sbjct: 61  LKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGE 120
Query: 154 PLVHPQDESYWGNVNPIGMF 173
             V P  E Y    +PI ++
Sbjct: 121 AKVIPTPEDY--PTHPISLY 138

>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312

Iteration: 1
 Score = 80.1 bits (196), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 60/162 (37%), Positives = 86/162 (53%), Gaps = 22/162 (13%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MRI+VTGGAGFIGSHLVDKL+E    EV+VVDN  +G ++ +     +P  EL   D+ +
Sbjct: 1   MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKD 54
Query: 93  PLL---IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTS 148
                 I+ D ++H A           P+     NV+ T N+L  A++ G R ++  S+S
Sbjct: 55  YSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSS 114
Query: 149 EVYGDPLV--HPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
            VYGD  V   P++E Y     PI ++      G  K  GE+
Sbjct: 115 TVYGDADVIPTPEEEPY----KPISVY------GAAKAAGEV 146

>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/161 (37%), Positives = 82/161 (50%), Gaps = 24/161 (14%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVD--NYFTGSKDNLRKWIGHPRFELIRHDV 90
           MRI+VTGGAGFIGSHLVDKL+E    EV+VVD     TG    L     H R +L   D 
Sbjct: 1   MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDIVQRDTGGSAEL-----HVR-DL--KDY 51
Query: 91  TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSE 149
           +    I+ D ++H A           P+     NV+ T N+L  A++ G R ++  S+S 
Sbjct: 52  SWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSST 111
Query: 150 VYGDPLV--HPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
           VYGD  V   P++E Y     PI ++      G  K  GE+
Sbjct: 112 VYGDADVIPTPEEEPY----KPISVY------GAAKAAGEV 142

>pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 71/150 (47%), Gaps = 17/150 (11%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENE-----KNEVIVVDNY-FTGSKDNLRKWIGHPRFELI 86
           MR+LVTGGAGFIGSH V +L+         +EVIV+D+  + G++ NL      PR   +
Sbjct: 1   MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 87  RHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A 140
             D+ +  L+      VD I H A  +             +TNV GT  +L  A   G  
Sbjct: 61  HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 141 RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170
           R++  ST EVYG       D   W   +P+
Sbjct: 121 RVVHVSTDEVYGSI-----DSGSWTESSPL 145

>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of Arna Length = 345

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
           MR+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D++ 
Sbjct: 1   MRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGDISI 56
Query: 92  -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
                E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  S
Sbjct: 57  HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116
Query: 147 TSEVYG 152
           TSEVYG
Sbjct: 117 TSEVYG 122

>pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 17/150 (11%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENE-----KNEVIVVDNY-FTGSKDNLRKWIGHPRFELI 86
           MR+LVTGGAGFIGSH V +L+         +EVIV+D+  + G++ NL      PR   +
Sbjct: 1   MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60
Query: 87  RHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A 140
             D+ +  L+      VD I H A  +             +TNV GT  +L  A   G  
Sbjct: 61  HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120
Query: 141 RILLTSTSEVYGDPLVHPQDESYWGNVNPI 170
           R++  ST++VYG       D   W   +P+
Sbjct: 121 RVVHVSTNQVYGSI-----DSGSWTESSPL 145

>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound Length = 348

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 65/126 (51%), Gaps = 8/126 (6%)
Query: 35  ILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTE 92
           I+VTGGAGFIGS+ V  +  N  +  V V+D   + G+K NL   +G  R EL+  D+ +
Sbjct: 7   IIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILG-DRVELVVGDIAD 65
Query: 93  PLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
             L++      D I H A  +       +P   I TN IGT  +L  A++   R    ST
Sbjct: 66  AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVST 125
Query: 148 SEVYGD 153
            EVYGD
Sbjct: 126 DEVYGD 131

>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619y Mutant Length = 358

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +   R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D
Sbjct: 11  RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGD 66
Query: 90  VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
           ++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+
Sbjct: 67  ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 126
Query: 144 LTSTSEVYG 152
             STSEVYG
Sbjct: 127 FPSTSEVYG 135

>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase Domain Length = 358

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +   R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D
Sbjct: 11  RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGD 66
Query: 90  VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
           ++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+
Sbjct: 67  ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 126
Query: 144 LTSTSEVYG 152
             STSEVYG
Sbjct: 127 FPSTSEVYG 135

>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619e Mutant Length = 358

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +   R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D
Sbjct: 11  RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGD 66
Query: 90  VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
           ++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+
Sbjct: 67  ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 126
Query: 144 LTSTSEVYG 152
             STSEVYG
Sbjct: 127 FPSTSEVYG 135

>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase) Domain, R619m Mutant Length = 358

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +   R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D
Sbjct: 11  RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGD 66
Query: 90  VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
           ++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+
Sbjct: 67  ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 126
Query: 144 LTSTSEVYG 152
             STSEVYG
Sbjct: 127 FPSTSEVYG 135

>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +   R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D
Sbjct: 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGD 368
Query: 90  VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
           ++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 428
Query: 144 LTSTSEVYG 152
             STSEVYG
Sbjct: 429 FPSTSEVYG 437

>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase (decarboxylase) Domain, S433a Mutant Length = 358

Iteration: 1
 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 10/129 (7%)
Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +   R+L+ G  GFIG+HL ++L+  +  EV  +D    GS D + +++ HP F  +  D
Sbjct: 11  RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLD---IGS-DAISRFLNHPHFHFVEGD 66
Query: 90  VT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL 143
           ++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+
Sbjct: 67  ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRII 126
Query: 144 LTSTSEVYG 152
             ST+EVYG
Sbjct: 127 FPSTAEVYG 135

>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSK-DNLRKWIGHPRFELIRHD 89
           +M++LVTGG GFIGS+ +  ++E   + EVI +D    GS   NL+     PR+  ++ D
Sbjct: 3   SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGD 62
Query: 90  VTE-----PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARI 142
           V +      L+ +VD + HLA  +       +P   + +NVIGT  +L   +R     R 
Sbjct: 63  VADYELVKELVRKVDGVVHLAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRF 122
Query: 143 LLTSTSEVYGDPL 155
           +  ST EVYGD L
Sbjct: 123 VHVSTDEVYGDIL 135

>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose 4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str. Ames In Complex With Nad Length = 346

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 74/136 (54%), Gaps = 11/136 (8%)
Query: 28  FFQSNM-RILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNY-FTGSKDNLRKWIGHPRFE 84
           +FQSN   ILVTGGAGFIGS+ V   +++ E  ++I  D   ++G+ +N++    HP + 
Sbjct: 19  YFQSNAXNILVTGGAGFIGSNFVHYXLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYY 78
Query: 85  LIRHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR 137
            ++ ++    L+E       V  I + A  +       NP+    TNVIGT+ +L L K+
Sbjct: 79  FVKGEIQNGELLEHVIKERDVQVIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKK 138
Query: 138 V-GARILLTSTSEVYG 152
               +++  ST EVYG
Sbjct: 139 YPHIKLVQVSTDEVYG 154

>pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 73/146 (50%), Gaps = 19/146 (13%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVT 91
           M+IL+TGGAGFIGS +V  +++N ++ V+ +D   + G+ ++L       R+     D+ 
Sbjct: 1   MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60
Query: 92  EPLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---- 140
           +   I       + D + HLA  +        P   I+TN++GT  +L +A++  +    
Sbjct: 61  DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120
Query: 141 ------RILLTSTSEVYGDPLVHPQD 160
                 R    ST EVYGD L HP +
Sbjct: 121 DKKNNFRFHHISTDEVYGD-LPHPDE 145

>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad, Hp0859) Length = 362

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 17/137 (12%)
Query: 32  NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGS--KDNLRKWIGHPRF----- 83
           N  IL+TGGAGF+GS+L     EN  K +V+V+D + + +   +N    +GH +      
Sbjct: 10  NQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFK 69
Query: 84  -ELIRHDVTEPL------LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
            E+I  D+  PL       +  D ++H A  +       N    +KTN    LN+L +A+
Sbjct: 70  GEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTM--LNQELVMKTNYQAFLNLLEIAR 127
Query: 137 RVGARILLTSTSEVYGD 153
              A+++  S++ VYG+
Sbjct: 128 SKKAKVIYASSAGVYGN 144

>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 71/134 (52%), Gaps = 11/134 (8%)
Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           S+MRIL+TGGAG +GS+L++  +  + +E++V+DN+ TG ++ L    G     +I   V
Sbjct: 19  SHMRILITGGAGCLGSNLIEHWLP-QGHEILVIDNFATGKREVLPPVAG---LSVIEGSV 74
Query: 91  TEPLLIE--VDQIYHLACPASPIFYKYNP---VKTIKTNVIGTLNMLGLAKRVGARILLT 145
           T+  L+E   D         S   YK +P    +   TNV G++N+   A + G + LL 
Sbjct: 75  TDAGLLERAFDSFKPTHVVHSAAAYK-DPDDWAEDAATNVQGSINVAKAASKAGVKRLLN 133
Query: 146 -STSEVYGDPLVHP 158
             T+  YG P   P
Sbjct: 134 FQTALCYGRPATVP 147

>pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +ST+ VYGD    P  ES+
Sbjct: 118 NFIFSSTATVYGDNPKIPYVESF 140

>pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 20/146 (13%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTE 92
           +IL+TGGAGFIGS LV  ++    + V+VVD   + G+  +L       RF   + D+ +
Sbjct: 3   KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 93  PLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA---------- 135
              +       + D + HLA  +        P   I+TN++GT  +L  A          
Sbjct: 63  RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 136 KRVGARILLTSTSEVYGDPLVHPQDE 161
           K+   R    ST EVYGD  +H  D+
Sbjct: 123 KKSAFRFHHISTDEVYGD--LHSTDD 146

>pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 11/139 (7%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWIGHPRFELI------ 86
           ++L+TGG GF+GS+L    + ++  ++IV DN    G+ DNL        FE +      
Sbjct: 3   KLLITGGCGFLGSNLASFAL-SQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 61
Query: 87  RHDVTEPLLIEV-DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RIL 143
           ++DVT  +   + D  +HLA   +      NP    + NV GTLN+L   ++  +   I+
Sbjct: 62  KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 121
Query: 144 LTSTSEVYGDPLVHPQDES 162
            +ST++VYGD   +  +E+
Sbjct: 122 YSSTNKVYGDLEQYKYNET 140

>pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S++ VYGD    P  ES+
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESF 140

>pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S++ VYGD    P  ES+
Sbjct: 118 NFIFSSSATVYGDQPKIPYVESF 140

>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmf In Complex With Nad+ Length = 377

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 8/106 (7%)
Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           +N  ++V GGAGF+GS+LV +L+E   N+V VVDN  +  K N+     HP        +
Sbjct: 31  ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPD---HPAVRFSETSI 87
Query: 91  TEPLLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNM 131
           T+  L+     E D ++HLA         ++P+   + N + TL +
Sbjct: 88  TDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLKL 133

>pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S++ VYGD    P  ES+
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESF 140

>pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S + VYGD    P  ES+
Sbjct: 118 NFIFSSAATVYGDQPKIPYVESF 140

>pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S++ VYGD    P  ES+
Sbjct: 118 NFIFSSSATVYGDNPKIPYVESF 140

>pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S + VYGD    P  ES+
Sbjct: 118 NFIFSSAATVYGDQPKIPYVESF 140

>pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S + VYGD    P  ES+
Sbjct: 118 NFIFSSAATVYGDNPKIPYVESF 140

>pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S + VYGD    P  ES+
Sbjct: 118 NFIFSSAATVYGDNPKIPYVESF 140

>pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL----RKWIGHPRFELIRH 88
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L    R    HP F  +  
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTF--VEG 57
Query: 89  DV-TEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           D+  E L+ E      +D + H A   +       P++    NV GTL ++   +    +
Sbjct: 58  DIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK 117
Query: 142 -ILLTSTSEVYGDPLVHPQDESY 163
             + +S + VYGD    P  ES+
Sbjct: 118 NFIFSSVATVYGDNPKIPYVESF 140

>pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 15/134 (11%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG---SKDNLRKWIGHPRFELIRHDV 90
           RIL+TGGAGFIG HL   L+ +   EV V+D+         +   K++  P  EL   D+
Sbjct: 9   RILITGGAGFIGGHLARALVAS-GEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDL 67
Query: 91  TEPLLIEVDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
           +     +V  +YHLA   S P  +K  P+  +  NV    ++L L   VG  ++++ ST 
Sbjct: 68  S-----DVRLVYHLASHKSVPRSFK-QPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTC 120
Query: 149 EVYG--DPLVHPQD 160
           EVYG  D L  P+D
Sbjct: 121 EVYGQADTLPTPED 134

>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MR+LVTGGAGFIGSH+V+ L+     EV V+DN  TG ++N+ K +   R +L   +  E
Sbjct: 1   MRVLVTGGAGFIGSHIVEDLLAR-GLEVAVLDNLATGKRENVPKGVPFFRVDLRDKEGVE 59
Query: 93  PLLIEV--DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS-- 148
               E     + H A  AS      +PV   + N++G LN+L   ++ G   L+ +++  
Sbjct: 60  RAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGG 119
Query: 149 EVYGDPLVHPQDESYW 164
            +YG+     + E  W
Sbjct: 120 AIYGEVPEGERAEETW 135

>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699

Iteration: 1
 Score = 53.9 bits (128), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 16/160 (10%)
Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW-------IGHPRFELIR 87
           +LVTGGAG+IGSH V +L+EN   + +V DN    + D++ +        I     +L  
Sbjct: 14  VLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD 72
Query: 88  HDVTEPLLIE--VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILL 144
               E +  E  +D + H A   +       P++    N++GT+ +L L ++   ++ + 
Sbjct: 73  RKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVF 132
Query: 145 TSTSEVYGDPLVHPQ-----DESYWGNVNPIGMFSFVLKD 179
           +S++ VYGD    P      +E   G  NP G   + +++
Sbjct: 133 SSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIEN 172

>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---FTGSK---DNLRK-------WIGH 80
           ++LVTGGAG+IGSH V +L+E     V V+DN+   F G     ++LR+        +  
Sbjct: 4   KVLVTGGAGYIGSHTVLELLEAGYLPV-VIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 81  PRFELIRHDVTEPLLIEVD--QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
              +++     + L  +     + H A   +       P+   + N+ GT+ +L + K  
Sbjct: 63  EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 139 GAR-ILLTSTSEVYGDPLVHPQDESY--WGNVNPIGMFSFVLKDGIMKLI 185
           G + ++ +S++ VYG+P   P DE++   G  NP G   F +++ I  L 
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLC 172

>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---FTGSK---DNLRK-------WIGH 80
           ++LVTGGAG+IGSH V +L+E     V V+DN+   F G     ++LR+        +  
Sbjct: 4   KVLVTGGAGYIGSHTVLELLEAGYLPV-VIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 81  PRFELIRHDVTEPLLIEVD--QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
              +++     + L  +     + H A   +       P+   + N+ GT+ +L + K  
Sbjct: 63  EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 139 GAR-ILLTSTSEVYGDPLVHPQDESY--WGNVNPIGMFSFVLKDGIMKLI 185
           G + ++ +S++ VYG+P   P DE++   G  NP G   F +++ I  L 
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLC 172

>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 19/170 (11%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY---FTGSK---DNLRK-------WIGH 80
           ++LVTGGAG+IGSH V +L+E     V V+DN+   F G     ++LR+        +  
Sbjct: 4   KVLVTGGAGYIGSHTVLELLEAGYLPV-VIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 81  PRFELIRHDVTEPLLIEVD--QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
              +++     + L  +     + H A   +       P+   + N+ GT+ +L + K  
Sbjct: 63  EEMDILDQGALQRLFKKYSFMAVIHFAGLKAMGESVQKPLDYYRVNLTGTIQLLEIMKAH 122
Query: 139 GAR-ILLTSTSEVYGDPLVHPQDESY--WGNVNPIGMFSFVLKDGIMKLI 185
           G + ++ +S++ VYG+P   P DE++   G  NP G   F +++ I  L 
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLC 172

>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 64/130 (49%), Gaps = 19/130 (14%)
Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           +MR L+TG AGF+G +L + L E +  EV      F  S++N  K    P  E+I  D+ 
Sbjct: 12  SMRALITGVAGFVGKYLANHLTE-QNVEV------FGTSRNNEAKL---PNVEMISLDIM 61
Query: 92  EPLL-------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK--RVGARI 142
           +          I+ D I+HLA  +S      N   T  TNV GTL++L   +   +  RI
Sbjct: 62  DSQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRI 121
Query: 143 LLTSTSEVYG 152
           L   +SE YG
Sbjct: 122 LTIGSSEEYG 131

>pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia Pseudomallei Length = 372

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-- 91
           ++L+ G  GFIG HL  +++E    EV  +D       D L   + H R      D+T  
Sbjct: 26  KVLILGVNGFIGHHLSKRILETTDWEVFGMDM----QTDRLGDLVKHERMHFFEGDITIN 81
Query: 92  ----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
               E  + + D I  L   A+P  Y   P++  + +    L ++  A + G  ++  ST
Sbjct: 82  KEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPST 141
Query: 148 SEVYG 152
           SEVYG
Sbjct: 142 SEVYG 146

>pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK----WIGHPRFELIRHDV 90
           IL+ GGAG+IGSH V KL++ E   V+VVDN  TG +D + +    + G  R +    DV
Sbjct: 4   ILICGGAGYIGSHAVKKLVD-EGLSVVVVDNLQTGHEDAITEGAKFYNGDLRDKAFLRDV 62
Query: 91  TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE 149
                IE   + H A  +        P++    NV G L +L +       + + +ST+ 
Sbjct: 63  FTQENIEA--VMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAA 120
Query: 150 VYGD 153
            YG+
Sbjct: 121 TYGE 124

>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 22/138 (15%)
Query: 36  LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
           L+TG AGFIGS+L++ L++ ++ +V+ +DN+ TG + NL         ++W     F+ I
Sbjct: 31  LITGVAGFIGSNLLETLLKLDQ-KVVGLDNFATGHQRNLDEVRSLVSEKQW---SNFKFI 86
Query: 87  RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
           + D+            VD + H A   S      +P+ +  TN+ G LNML  A+    +
Sbjct: 87  QGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ 146
Query: 142 -ILLTSTSEVYGDPLVHP 158
                ++S  YGD   HP
Sbjct: 147 SFTYAASSSTYGD---HP 161

>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364

Iteration: 1
 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 20/157 (12%)
Query: 36  LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
           L+TG AGFIGS+L++KL++  +  VI +DN+ TG + NL          +W    RF  I
Sbjct: 42  LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 97
Query: 87  RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
             D+      E ++  VD + H A   S      +P+ T  TN+ G LN+L  AK    +
Sbjct: 98  EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 157
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGN-VNPIGMFSFV 176
                ++S  YGD    P+ E   GN ++P  +  +V
Sbjct: 158 SFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYV 194

>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 20/157 (12%)
Query: 36  LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
           L+TG AGFIGS+L++KL++  +  VI +DN+ TG + NL          +W    RF  I
Sbjct: 29  LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 84
Query: 87  RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
             D+      E ++  VD + H A   S      +P+ T  TN+ G LN+L  AK    +
Sbjct: 85  EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 144
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGN-VNPIGMFSFV 176
                ++S  YGD    P+ E   GN ++P  +  +V
Sbjct: 145 SFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYV 181

>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 20/157 (12%)
Query: 36  LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
           L+TG AGFIGS+L++KL++  +  VI +DN+ TG + NL          +W    RF  I
Sbjct: 29  LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 84
Query: 87  RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
             D+      E ++  VD + H A   S      +P+ T  TN+ G LN+L  AK    +
Sbjct: 85  EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 144
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGN-VNPIGMFSFV 176
                ++S  YGD    P+ E   GN ++P  +  +V
Sbjct: 145 SFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYV 181

>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 78/157 (49%), Gaps = 20/157 (12%)
Query: 36  LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL---------RKWIGHPRFELI 86
           L+TG AGFIGS+L++KL++  +  VI +DN+ TG + NL          +W    RF  I
Sbjct: 23  LITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQW---SRFCFI 78
Query: 87  RHDV-----TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
             D+      E ++  VD + H A   S      +P+ T  TN+ G LN+L  AK    +
Sbjct: 79  EGDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQ 138
Query: 142 -ILLTSTSEVYGDPLVHPQDESYWGN-VNPIGMFSFV 176
                ++S  YGD    P+ E   GN ++P  +  +V
Sbjct: 139 SFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYV 175

>pdb|1GY8|A Chain A, Trypanosoma Brucei Udp-Galactose 4' Epimerase Length = 397

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 29/152 (19%)
Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT--GSKDNLRKWIGHPRFELIRH 88
           S+MR+LV GGAG+IGSH V  L+ +  + V++VD+     G  D++       R +L + 
Sbjct: 1   SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVAR-KLQQS 59
Query: 89  DVTEPLLIE-------------------------VDQIYHLACPASPIFYKYNPVKTIKT 123
           D  +P   +                         +D + H+    +      +P+K    
Sbjct: 60  DGPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDN 119
Query: 124 NVIGTLNML-GLAKRVGARILLTSTSEVYGDP 154
           NV+G L +L  +      +I+ +S++ ++G+P
Sbjct: 120 NVVGILRLLQAMLLHKCDKIIFSSSAAIFGNP 151

>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase In Complex With Nadph And Udp-Glcnac Length = 344

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 5/129 (3%)
Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           N  IL+TGG G  G   V K+++    + I+V +     +  +      PR      DV 
Sbjct: 21  NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVR 80
Query: 92  EP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
           +       L  VD   H A        +YNP++ IKTN++G  N++    +     ++  
Sbjct: 81  DLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIAL 140
Query: 147 TSEVYGDPL 155
           +++   +P+
Sbjct: 141 STDKAANPI 149

>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 65/135 (48%), Gaps = 18/135 (13%)
Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           ++ +TG  G IGSH+ + L+E   ++V+ +DN+ TG +++L+    HP    +   + + 
Sbjct: 23  KVFITGICGQIGSHIAELLLE-RGDKVVGIDNFATGRREHLKD---HPNLTFVEGSIADH 78
Query: 94  LLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR--VGARILL 144
            L+       + D + H A         YN      TN +G  N++  AK+  VG R + 
Sbjct: 79  ALVNQLIGDLQPDAVVHTAASYKDPDDWYN---DTLTNCVGGSNVVQAAKKNNVG-RFVY 134
Query: 145 TSTSEVYG-DPLVHP 158
             T+  YG  P+  P
Sbjct: 135 FQTALCYGVKPIQQP 149

>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella Typhi Length = 359

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 22/127 (17%)
Query: 27  KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS------------KDNL 74
           K F    R+ VTG  GF GS L   L E       +V  Y   +             D +
Sbjct: 4   KNFWQGKRVFVTGHTGFKGSWLSLWLTEMGA----IVKGYALDAPTVPSLFEIVRLNDLM 59
Query: 75  RKWIGHPR-FELIRHDVTEPLLIEVDQIYHLAC-PASPIFYKYNPVKTIKTNVIGTLNML 132
              IG  R FE +R  + E    + + ++H+A  P   + Y+  P+KT  TNV+GT+++L
Sbjct: 60  ESHIGDIRDFEKLRSSIAE---FKPEIVFHMAAQPLVRLSYE-QPIKTYSTNVMGTVHLL 115
Query: 133 GLAKRVG 139
              K+VG
Sbjct: 116 ETVKQVG 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	190
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	3e-93
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	2e-84
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	2e-80
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	5e-74
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	1e-71
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	5e-61
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	3e-54
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	5e-40
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	7e-39
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	7e-38
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	7e-36
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	3e-35
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	5e-35
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	1e-33
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	2e-33
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	9e-33
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	1e-32
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	2e-32
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	5e-32
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	6e-32
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	6e-31
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	2e-30
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	1e-29
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	1e-27
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	4e-27
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	3e-24
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	3e-24
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	1e-23
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	4e-23
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	2e-22
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	3e-22
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	1e-21
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	7e-19
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	8e-18
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	1e-16
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	2e-16
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	6e-15
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	2e-13
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	2e-13
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	4e-13
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	1e-12
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	3e-12
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	2e-11
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	3e-11
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	5e-11
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	1e-10
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	2e-10
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	8e-10
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	7e-09
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	1e-08
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	4e-08
1xq6_A	253	Unknown protein; structural genomics, protein stru	8e-07
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	1e-06
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	1e-06
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	2e-06
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	8e-06
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	2e-05
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	2e-05
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	2e-05
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	2e-05
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	5e-05
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	7e-05
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	1e-04
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	1e-04
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	2e-04
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	4e-04

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343

 Score =  274 bits (702), Expect = 3e-93
 Identities = 109/166 (65%), Positives = 123/166 (74%), Gaps = 4/166 (2%)

Query: 6   SNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65
           S+ +H+ +S            K      RIL+TGGAGF+GSHL DKLM  + +EV VVDN
Sbjct: 4   SHHHHHHSSGRENLYFQGHMEK---DRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDN 59

Query: 66  YFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNV 125
           +FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN 
Sbjct: 60  FFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNT 119

Query: 126 IGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIG 171
           IGTLNMLGLAKRVGAR+LL STSEVYGDP VHPQ E YWG+VNPIG
Sbjct: 120 IGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIG 165

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345

 Score =  251 bits (644), Expect = 2e-84
 Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 11/146 (7%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
           MR+L+ G  GFIG+HL ++L+  +  EV  +D       D + +++ HP F  +  D++ 
Sbjct: 1   MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEGDISI 56

Query: 92  -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
                E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI+  S
Sbjct: 57  HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116

Query: 147 TSEVYGDPLVHPQDESYWG-NVNPIG 171
           TSEVYG       DE +    V P+ 
Sbjct: 117 TSEVYGMCSDKYFDEDHSNLIVGPVN 142

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372

 Score =  242 bits (620), Expect = 2e-80
 Identities = 40/175 (22%), Positives = 71/175 (40%), Gaps = 19/175 (10%)

Query: 6   SNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN 65
            + +H+  +    T  P           ++L+ G  GFIG HL  +++E   +  +   +
Sbjct: 3   HHHHHHMGTLEAQTQGPGSMKA-----KKVLILGVNGFIGHHLSKRILE-TTDWEVFGMD 56

Query: 66  YFTGSKDNLRKWIGHPRFELIRHDVT------EPLLIEVDQIYHLACPASPIFYKYNPVK 119
             T    +L   + H R      D+T      E  + + D I  L   A+P  Y   P++
Sbjct: 57  MQTDRLGDL---VKHERMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLR 113

Query: 120 TIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG---DPLVHPQDESY-WGNVNPI 170
             + +    L ++  A + G  ++  STSEVYG   D    P   +  +G +N  
Sbjct: 114 VFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKP 168

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379

 Score =  226 bits (578), Expect = 5e-74
 Identities = 37/174 (21%), Positives = 69/174 (39%), Gaps = 12/174 (6%)

Query: 6   SNGNHNSASKPPPTPSPLRFSKFF-QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD 64
           + G  N       T   L   +++   N++I +TG  GFI SH+  +L   E + VI  D
Sbjct: 2   AMGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKH-EGHYVIASD 60

Query: 65  NYFTGSKDNLRKWIGHPRFELIRHDVTE---PLLIEVDQIYHLACPASPI-FYKYNPVKT 120
                  +++ + +    F L+   V E    +   VD +++LA     + F + N    
Sbjct: 61  ---WKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVI 117

Query: 121 IKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVHPQDESY--WGNVNPIG 171
           +  N + + NM+  A+  G  R    S++ +Y +              +  P  
Sbjct: 118 MYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAE 171

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377

 Score =  220 bits (562), Expect = 1e-71
 Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 14/196 (7%)

Query: 1   MAQEISNGNHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEV 60
           M     + +H+S   P  +  P+  +    +N  ++V GGAGF+GS+LV +L+E   N+V
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQV 60

Query: 61  IVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-----EVDQIYHLACPASPIFYKY 115
            VVDN  +  K N+     HP        +T+  L+     E D ++HLA         +
Sbjct: 61  HVVDNLLSAEKINVP---DHPAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIH 117

Query: 116 NPVKTIKTNVIGTLNMLGLA---KRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGM 172
           +P+   + N + TL +       KR+   +   +   +        +       V+    
Sbjct: 118 DPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNN 177

Query: 173 FSFVLKDGIMKLIGEL 188
            S      + K+ GE 
Sbjct: 178 DSPY---SMSKIFGEF 190

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321

 Score =  191 bits (487), Expect = 5e-61
 Identities = 45/145 (31%), Positives = 65/145 (44%), Gaps = 16/145 (11%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR---KWIGHPRFELIR 87
              RIL+TGGAGFIG HL   L+     EV V+D+             K++  P  EL  
Sbjct: 6   LKHRILITGGAGFIGGHLARALVA-SGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEE 64

Query: 88  HDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
            D++     +V  +YHLA   S       P+  +  NV    ++L L   VG  ++++ S
Sbjct: 65  RDLS-----DVRLVYHLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCTSVGVPKVVVGS 118

Query: 147 TSEVYGDPLVHPQDESYWGNVNPIG 171
           T EVYG     P  E      +P+ 
Sbjct: 119 TCEVYGQADTLPTPED-----SPLS 138

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312

 Score =  173 bits (442), Expect = 3e-54
 Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 12/142 (8%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MRI+VTGGAGFIGSHLVDKL+E    EV+VVDN  +G ++ +     +P  EL   D+ +
Sbjct: 1   MRIVVTGGAGFIGSHLVDKLVE-LGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKD 54

Query: 93  PLL---IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTS 148
                 I+ D ++H A           P+     NV+ T N+L  A++ G   ++  S+S
Sbjct: 55  YSWGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSS 114

Query: 149 EVYGDPLVHPQDESYWGNVNPI 170
            VYGD  V P  E       PI
Sbjct: 115 TVYGDADVIPTPEEE--PYKPI 134

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313

 Score =  137 bits (347), Expect = 5e-40
 Identities = 50/144 (34%), Positives = 82/144 (56%), Gaps = 16/144 (11%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
             I+VTGGAGFIGSH+VDKL E+  NE++V+DN  +G+++ +     +    L++ D+  
Sbjct: 2   SLIVVTGGAGFIGSHVVDKLSES--NEIVVIDNLSSGNEEFV-----NEAARLVKADLAA 54

Query: 93  PLLIE----VDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
             + +     ++++H+A      I  + NP +  + NV+ T  +L   ++ G  RI+ TS
Sbjct: 55  DDIKDYLKGAEEVWHIAANPDVRIGAE-NPDEIYRNNVLATYRLLEAMRKAGVSRIVFTS 113

Query: 147 TSEVYGDPLVHPQDESYWGNVNPI 170
           TS VYG+  V P  E Y    +PI
Sbjct: 114 TSTVYGEAKVIPTPEDY--PTHPI 135

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311

 Score =  134 bits (339), Expect = 7e-39
 Identities = 33/141 (23%), Positives = 51/141 (36%), Gaps = 20/141 (14%)

Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           +++I VTGG GF+G ++V+ +   + N  I++         N         +E    D T
Sbjct: 2   SLKIAVTGGTGFLGQYVVESIKN-DGNTPIILTRSIGNKAIND--------YEYRVSDYT 52

Query: 92  EPLLIE----VDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLT 145
              LI     VD + HLA             +     N I T N+         + I+  
Sbjct: 53  LEDLINQLNDVDAVVHLAATRGSQ-----GKISEFHDNEILTQNLYDACYENNISNIVYA 107

Query: 146 STSEVYGDPLVHPQDESYWGN 166
           ST   Y D    P +E     
Sbjct: 108 STISAYSDETSLPWNEKELPL 128

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352

 Score =  132 bits (334), Expect = 7e-38
 Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 13/170 (7%)

Query: 9   NHNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT 68
           +H+  S    +       +        L+TG AGFIGS+L++ L++    +V+ +DN+ T
Sbjct: 4   HHHHGSMGMMSRYEELRKELPAQPKVWLITGVAGFIGSNLLETLLK-LDQKVVGLDNFAT 62

Query: 69  GSKDNLRKW------IGHPRFELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKYNP 117
           G + NL +            F+ I+ D+            VD + H A   S      +P
Sbjct: 63  GHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDP 122

Query: 118 VKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGN 166
           + +  TN+ G LNML  A+          ++S  YGD    P+ E   G 
Sbjct: 123 ITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGK 172

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362

 Score =  127 bits (321), Expect = 7e-36
 Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 28/174 (16%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVVDNYFTGSKDNL--------RKWIGHP 81
            N  IL+TGGAGF+GS+L     E + K +V+V+D + + +  +          K +   
Sbjct: 9   ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGF 68

Query: 82  RFELIRHDVTEPLLIE------VDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
           + E+I  D+  PL +        D ++H  A   + +    N    +KTN    LN+L +
Sbjct: 69  KGEVIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTM---LNQELVMKTNYQAFLNLLEI 125

Query: 135 AKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
           A+   A+++  S++ VYG+    P       N +P  ++      G  KL  + 
Sbjct: 126 ARSKKAKVIYASSAGVYGNTKA-PNVVGK--NESPENVY------GFSKLCMDE 170

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660

 Score =  129 bits (326), Expect = 3e-35
 Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 11/151 (7%)

Query: 29  FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH 88
            +   R+L+ G  GFIG+HL ++L+  +  EV  +D       D + +++ HP F  +  
Sbjct: 312 ARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEG 367

Query: 89  DVT------EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARI 142
           D++      E  + + D +  L   A+PI Y  NP++  + +    L ++    +   RI
Sbjct: 368 DISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI 427

Query: 143 LLTSTSEVYGDPLVHPQDESYWGNV-NPIGM 172
           +  STSEVYG       DE +   +  P+  
Sbjct: 428 IFPSTSEVYGMCSDKYFDEDHSNLIVGPVNK 458

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333

 Score =  124 bits (314), Expect = 5e-35
 Identities = 36/148 (24%), Positives = 65/148 (43%), Gaps = 20/148 (13%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
            ++ +TG  G IGSH+ + L+E   ++V+ +DN+ TG +++L+    HP    +   + +
Sbjct: 22  KKVFITGICGQIGSHIAELLLE-RGDKVVGIDNFATGRREHLK---DHPNLTFVEGSIAD 77

Query: 93  PLLIE-------VDQIYHLACPAS-PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RIL 143
             L+         D + H A     P     +      TN +G  N++  AK+    R +
Sbjct: 78  HALVNQLIGDLQPDAVVHTAASYKDP----DDWYNDTLTNCVGGSNVVQAAKKNNVGRFV 133

Query: 144 LTSTSEVYGD-PLVHPQDESYWGNVNPI 170
              T+  YG  P+  P    +    NP 
Sbjct: 134 YFQTALCYGVKPIQQPVRLDH--PRNPA 159

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351

 Score =  121 bits (305), Expect = 1e-33
 Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 19/148 (12%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW------IGHPRF 83
            S    L+TG AGFIGS+L++KL++     VI +DN+ TG + NL +           RF
Sbjct: 23  FSPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRF 81

Query: 84  ELIRHDVTEPLLIE-----VDQIYHLACPASPIFYKY---NPVKTIKTNVIGTLNMLGLA 135
             I  D+ +    E     VD + H A   S         +P+ T  TN+ G LN+L  A
Sbjct: 82  CFIEGDIRDLTTCEQVMKGVDHVLHQAALGS---VPRSIVDPITTNATNITGFLNILHAA 138

Query: 136 KRVGA-RILLTSTSEVYGDPLVHPQDES 162
           K          ++S  YGD    P+ E 
Sbjct: 139 KNAQVQSFTYAASSSTYGDHPALPKVEE 166

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357

 Score =  120 bits (304), Expect = 2e-33
 Identities = 36/164 (21%), Positives = 64/164 (39%), Gaps = 18/164 (10%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHD 89
               I+VTGGAGFIGS++V  L +    +++VVDN   G+K  NL     +    + + D
Sbjct: 45  EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL--NIADYMDKED 102

Query: 90  VTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL 144
               ++       V+ I+H    +S   +    +  +  N   +  +L          L 
Sbjct: 103 FLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCLEREIPFLY 160

Query: 145 TSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
            S++  YG       +        P+ +F      G  K + + 
Sbjct: 161 ASSAATYGGRTSDFIESRE--YEKPLNVF------GYSKFLFDE 196

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310

 Score =  118 bits (297), Expect = 9e-33
 Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 20/161 (12%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEP 93
           I+VTGGAGFIGS++V  L +    +++VVDN   G+K  NL     +    + + D    
Sbjct: 2   IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD--LNIADYMDKEDFLIQ 59

Query: 94  LLIE-----VDQIYHL-ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
           ++       V+ I+H  AC ++    +++    +  N   +  +L          L  S+
Sbjct: 60  IMAGEEFGDVEAIFHEGACSSTT---EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASS 116

Query: 148 SEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
           +  YG       +        P+ +       G  K + + 
Sbjct: 117 AATYGGRTSDFIESR--EYEKPLNV------YGYSKFLFDE 149

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369

 Score =  119 bits (299), Expect = 1e-32
 Identities = 22/122 (18%), Positives = 41/122 (33%), Gaps = 23/122 (18%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M I++TG  GF+G +L   L     + +  V       ++ L   +              
Sbjct: 1   MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTK--EEELESALL------------- 45

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
               + D I HLA    P     +  +    NV    ++L +  R   +  +  +S +  
Sbjct: 46  ----KADFIVHLAGVNRPE----HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQA 97

Query: 153 DP 154
             
Sbjct: 98  TQ 99

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342

 Score =  117 bits (296), Expect = 2e-32
 Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 32/178 (17%)

Query: 29  FQSNMRILVTGGAGFIGSHLVDKLME------NEKNEVIVVDNYFTGSKDNLRKWIGHPR 82
           +   M I + G AG +G  L  +L++          +  ++D +   +            
Sbjct: 11  YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGF-----SGA 65

Query: 83  FELIRHDVTEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
            +    D++ P   E       D I+HLA   S      +  K  + N+ GT  +    +
Sbjct: 66  VDARAADLSAPGEAEKLVEARPDVIFHLAAIVSGEAEL-DFDKGYRINLDGTRYLFDAIR 124

Query: 137 RVGA------RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
                     R++ TS+  V+G PL +P  + +     P+  +      G  K I EL
Sbjct: 125 IANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFH--TTPLTSY------GTQKAICEL 174

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267

 Score =  115 bits (289), Expect = 5e-32
 Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 22/138 (15%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           R+LVTG AG +GS +   L     +EV + D    G+ +           E++  D+ + 
Sbjct: 4   RLLVTGAAGGVGSAIRPHLGT-LAHEVRLSDIVDLGAAEAH--------EEIVACDLADA 54

Query: 94  LLIE-----VDQIYHLACPASPIFYKYNPV-KTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
             +       D I HL   +        P    ++ N+IG  N+   A+ +G  RI+  S
Sbjct: 55  QAVHDLVKDCDGIIHLGGVSVE-----RPWNDILQANIIGAYNLYEAARNLGKPRIVFAS 109

Query: 147 TSEVYGD-PLVHPQDESY 163
           ++   G  P     D   
Sbjct: 110 SNHTIGYYPRTTRIDTEV 127

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330

 Score =  116 bits (293), Expect = 6e-32
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 23/144 (15%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           S+MRIL+TGGAG +GS+L++  +  + +E++V+DN+ TG ++ L          +I   V
Sbjct: 19  SHMRILITGGAGCLGSNLIEHWLP-QGHEILVIDNFATGKREVLPP---VAGLSVIEGSV 74

Query: 91  TEPLLIE-------VDQIYHLA----CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
           T+  L+E          + H A     P                NV G++N+   A + G
Sbjct: 75  TDAGLLERAFDSFKPTHVVHSAAAYKDPDDWAEDAAT-------NVQGSINVAKAASKAG 127

Query: 140 A-RILLTSTSEVYGDPLVHPQDES 162
             R+L   T+  YG P   P    
Sbjct: 128 VKRLLNFQTALCYGRPATVPIPID 151

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317

 Score =  113 bits (285), Expect = 6e-31
 Identities = 43/163 (26%), Positives = 66/163 (40%), Gaps = 27/163 (16%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           ILVTG +G IG+ LV  L E    + ++  +                  + I  DV+   
Sbjct: 2   ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRD---------TGGIKFITLDVSNRD 52

Query: 95  LIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
            I+       +D I+HLA   S    K +P    K N+ GT N+L  AK+    ++++ S
Sbjct: 53  EIDRAVEKYSIDAIFHLAGILSAKGEK-DPALAYKVNMNGTYNILEAAKQHRVEKVVIPS 111

Query: 147 TSEVYGDPL-VHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
           T  V+G     +           P  MF      G+ K+  EL
Sbjct: 112 TIGVFGPETPKNKVPSITI--TRPRTMF------GVTKIAAEL 146

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312

 Score =  111 bits (281), Expect = 2e-30
 Identities = 36/165 (21%), Positives = 59/165 (35%), Gaps = 22/165 (13%)

Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           N +IL+ G  G IG+ L  KL +    E ++  +    + D +              +  
Sbjct: 2   NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVVNS------GPFEVVNAL 55

Query: 92  EPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARIL 143
           +   IE       +  IY +A   S    + NP      N+    ++L LAK     +I 
Sbjct: 56  DFNQIEHLVEVHKITDIYLMAALLSAT-AEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIF 114

Query: 144 LTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
             S+  V+G          Y   + P  ++      GI K  GE 
Sbjct: 115 WPSSIAVFGPTTPKENTPQY-TIMEPSTVY------GISKQAGER 152

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311

 Score =  109 bits (276), Expect = 1e-29
 Identities = 44/144 (30%), Positives = 70/144 (48%), Gaps = 24/144 (16%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MR+LVTGGAGFIGSH+V+ L+     EV V+DN  TG ++N+            R D+ +
Sbjct: 1   MRVLVTGGAGFIGSHIVEDLLA-RGLEVAVLDNLATGKRENV-----PKGVPFFRVDLRD 54

Query: 93  PLLIE-------VDQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA- 140
              +E          + H A       S      +PV   + N++G LN+L   ++ G  
Sbjct: 55  KEGVERAFREFRPTHVSHQAAQASVKVSVE----DPVLDFEVNLLGGLNLLEACRQYGVE 110

Query: 141 RILLTSTSE-VYGD-PLVHPQDES 162
           +++  ST   +YG+ P     +E+
Sbjct: 111 KLVFASTGGAIYGEVPEGERAEET 134

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267

 Score =  103 bits (259), Expect = 1e-27
 Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 20/140 (14%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           +  R+LVTG AG +G  + ++L      E++ + +               P  E ++ D+
Sbjct: 2   AMKRLLVTGAAGQLGRVMRERLA--PMAEILRLADLSPLDPA-------GPNEECVQCDL 52

Query: 91  TEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL 144
            +      ++   D I HL   +          + ++ N+IG  N+   A+  G  RI+ 
Sbjct: 53  ADANAVNAMVAGCDGIVHLGGISVE----KPFEQILQGNIIGLYNLYEAARAHGQPRIVF 108

Query: 145 TSTSEVYGD-PLVHPQDESY 163
            S++   G  P         
Sbjct: 109 ASSNHTIGYYPQTERLGPDV 128

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347

 Score =  103 bits (260), Expect = 4e-27
 Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 25/160 (15%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN-YFTGSKDNLRKWIGHPRFELIRHDVT 91
            ++L+TGG GF+GS+L    +     ++IV DN    G+ DNL        FE +  D+ 
Sbjct: 2   AKLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIR 60

Query: 92  EPLLIE-------VDQIYHLACPA------SPIFYKYNPVKTIKTNVIGTLNMLGLAKR- 137
               +         D  +HLA         S I    NP    + NV GTLN+L   ++ 
Sbjct: 61  NKNDVTRLITKYMPDSCFHLA--GQVAMTTS-I---DNPCMDFEINVGGTLNLLEAVRQY 114

Query: 138 -VGARILLTSTSEVYGD--PLVHPQDESYWGNVNPIGMFS 174
                I+ +ST++VYGD     + + E+ +  V+    + 
Sbjct: 115 NSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYD 154

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404

 Score = 96.8 bits (241), Expect = 3e-24
 Identities = 36/166 (21%), Positives = 56/166 (33%), Gaps = 36/166 (21%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN---------------- 73
               R++V GG G+ G      L +    EV +VDN      D+                
Sbjct: 9   HHGSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDR 67

Query: 74  LRKW--IGHPRFELIRHDVTEPLLIE-------VDQIYHLACPASP-----IFYKYNPVK 119
           + +W  +     EL   D+ +   +         D + H            +  +   V 
Sbjct: 68  ISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFG--EQRSAPYSMIDRSRAVY 125

Query: 120 TIKTNVIGTLNMLGLAKR--VGARILLTSTSEVYGDPLVHPQDESY 163
           T   NVIGTLN+L   K       ++   T   YG P +   +E Y
Sbjct: 126 TQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIEEGY 170

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337

 Score = 96.0 bits (240), Expect = 3e-24
 Identities = 49/144 (34%), Positives = 66/144 (45%), Gaps = 34/144 (23%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKN-----EVIVVDN--YFTGSKDNLRKWIGHPRFEL 85
           MR+LVTGGAGFIGSH V +L+          EVIV+D+  Y  G++ NL      PR   
Sbjct: 1   MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTY-AGNRANLAPVDADPRLRF 59

Query: 86  IRHDVT-----EPLLIEVDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLN 130
           +  D+         L  VD I H A            +  +F         +TNV GT  
Sbjct: 60  VHGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGAS--VF--------TETNVQGTQT 109

Query: 131 MLGLAKRVGA-RILLTSTSEVYGD 153
           +L  A   G  R++  ST++VYG 
Sbjct: 110 LLQCAVDAGVGRVVHVSTNQVYGS 133

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336

 Score = 94.5 bits (236), Expect = 1e-23
 Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 31/143 (21%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDN--YFTGSKDNLRKWIGHPRFELIR 87
            +M++LVTGG GFIGS+ +  ++E   + EVI +D   Y   +  NL+     PR+  ++
Sbjct: 2   HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGY-GSNPANLKDLEDDPRYTFVK 60

Query: 88  HDVT-----EPLLIEVDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLNML 132
            DV      + L+ +VD + HLA           P   IF        + +NVIGT  +L
Sbjct: 61  GDVADYELVKELVRKVDGVVHLAAESHVDRSISSPE--IF--------LHSNVIGTYTLL 110

Query: 133 GLAKR--VGARILLTSTSEVYGD 153
              +R     R +  ST EVYGD
Sbjct: 111 ESIRRENPEVRFVHVSTDEVYGD 133

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348

 Score = 93.4 bits (233), Expect = 4e-23
 Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 32/160 (20%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDN--YFTGSKDNLRKWIGHPRFELIRHD 89
             I+VTGGAGFIGS+ V  +  N  +  V V+D   Y  G+K NL   I   R EL+  D
Sbjct: 5   KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTY-AGNKANLEA-ILGDRVELVVGD 62

Query: 90  VT-----EPLLIEVDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLNMLGL 134
           +      + L  + D I H A           P+   F        I TN IGT  +L  
Sbjct: 63  IADAELVDKLAAKADAIVHYAAESHNDNSLNDPS--PF--------IHTNFIGTYTLLEA 112

Query: 135 AKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFS 174
           A++   R    ST EVYGD  +  +++       P   F+
Sbjct: 113 ARKYDIRFHHVSTDEVYGD--LPLREDLPGHGEGPGEKFT 150

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346

 Score = 91.4 bits (228), Expect = 2e-22
 Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 24/144 (16%)

Query: 27  KFFQSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDN--YFTGSKDNLRKWIGHPRF 83
            F  + M ILVTGGAGFIGS+ V  ++++ +  ++I  D   Y +G+ +N++    HP +
Sbjct: 19  YFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTY-SGNLNNVKSIQDHPNY 77

Query: 84  ELIRHDVTEPLLIE-------VDQIYHLACPA------SPIFYKYNPVKTIKTNVIGTLN 130
             ++ ++    L+E       V  I + A  A      S I    NP+    TNVIGT+ 
Sbjct: 78  YFVKGEIQNGELLEHVIKERDVQVIVNFA--AESHVDRS-I---ENPIPFYDTNVIGTVT 131

Query: 131 MLGLAKRVGA-RILLTSTSEVYGD 153
           +L L K+    +++  ST EVYG 
Sbjct: 132 LLELVKKYPHIKLVQVSTDEVYGS 155

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361

 Score = 90.7 bits (226), Expect = 3e-22
 Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 40/150 (26%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN--YFTGSKDNLRKWIGHPRFELIRHDV 90
           M+IL+TGGAGFIGS +V  +++N ++ V+ +D   Y  G+ ++L       R+     D+
Sbjct: 1   MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTY-AGNLESLSDISESNRYNFEHADI 59

Query: 91  TEPLLIE-------VDQIYHLAC----------PASPIFYKYNPVKTIKTNVIGTLNML- 132
            +   I         D + HLA           PA   F        I+TN++GT  +L 
Sbjct: 60  CDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPA--AF--------IETNIVGTYALLE 109

Query: 133 ---------GLAKRVGARILLTSTSEVYGD 153
                    G  K+   R    ST EVYGD
Sbjct: 110 VARKYWSALGEDKKNNFRFHHISTDEVYGD 139

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342

 Score = 89.3 bits (222), Expect = 1e-21
 Identities = 18/146 (12%), Positives = 50/146 (34%), Gaps = 15/146 (10%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           ++++  V G  G +G H    +     ++++++  +   S+    + + +   E    ++
Sbjct: 12  AHVKYAVLGATGLLGHHAARAIRA-AGHDLVLI--HRPSSQ---IQRLAYLEPECRVAEM 65

Query: 91  TEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILL 144
            +   +E     +D +   A             + + + +  T        +    RIL 
Sbjct: 66  LDHAGLERALRGLDGVIFSAGYYP--SRPRRWQEEVASALGQTNPFYAACLQARVPRILY 123

Query: 145 TSTSEVYG-DPLVHPQDESYWGNVNP 169
             ++      P   P  E  + +  P
Sbjct: 124 VGSAYAMPRHPQGLPGHEGLFYDSLP 149

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330

 Score = 81.3 bits (202), Expect = 7e-19
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 26/144 (18%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
             IL+ GGAG+IGSH V KL++ E   V+VVDN  TG +D +         +    D+  
Sbjct: 2   NSILICGGAGYIGSHAVKKLVD-EGLSVVVVDNLQTGHEDAI-----TEGAKFYNGDLRD 55

Query: 92  EPLLIEV------DQIYHLACPASPIFYKY------NPVKTIKTNVIGTLNMLGLAKRVG 139
           +  L +V      + + H A                 P++    NV G L +L +     
Sbjct: 56  KAFLRDVFTQENIEAVMHFAA------DSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFK 109

Query: 140 A-RILLTSTSEVYGDPLVHPQDES 162
             + + +ST+  YG+  V    E 
Sbjct: 110 VDKFIFSSTAATYGEVDVDLITEE 133

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397

 Score = 78.9 bits (195), Expect = 8e-18
 Identities = 31/162 (19%), Positives = 61/162 (37%), Gaps = 35/162 (21%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           S+MR+LV GGAG+IGSH V  L+ +  + V++VD+       +            ++   
Sbjct: 1   SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60

Query: 91  TEPL--------LIEVDQIYHLACPA--SPIFYKYNPVKTI------------------- 121
                       L   D    +      + +F ++ P+  +                   
Sbjct: 61  GPKPPWADRYAALEVGD----VRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKY 116

Query: 122 -KTNVIGTLNMLGLAKRVG-ARILLTSTSEVYGDPLVHPQDE 161
              NV+G L +L         +I+ +S++ ++G+P +     
Sbjct: 117 YDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVST 158

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338

 Score = 75.2 bits (186), Expect = 1e-16
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 25/147 (17%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRHDV 90
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L   + +G      +  D+
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDI 59

Query: 91  TEPLLIE-------VDQIYHLAC-------PASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
               L+        +D + H A           P+ Y  N       NV GTL ++   +
Sbjct: 60  RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-------NVNGTLRLISAMR 112

Query: 137 RVGARILLTSTSE-VYGDPLVHPQDES 162
               +  + S+S  VYGD    P  ES
Sbjct: 113 AANVKNFIFSSSATVYGDNPKIPYVES 139

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341

 Score = 74.8 bits (185), Expect = 2e-16
 Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 26/159 (16%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRH 88
           +   ILVTGGAG+IGSH   +L+ +   +V++ DN     ++ +   + I          
Sbjct: 4   TKGTILVTGGAGYIGSHTAVELLAHG-YDVVIADNLVNSKREAIARIEKITGKTPAFHET 62

Query: 89  DVTEPLLIE-------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
           DV++   +        +    H A         A PI Y  N       N+   L++L +
Sbjct: 63  DVSDERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRN-------NLDSLLSLLRV 115

Query: 135 AKRVGARILLTSTS-EVYGDPLVHPQDESY-WGNVNPIG 171
            +    + ++ S+S  VYG P   P DE++     NP G
Sbjct: 116 MRERAVKRIVFSSSATVYGVPERSPIDETFPLSATNPYG 154

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699

 Score = 71.3 bits (175), Expect = 6e-15
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 30/163 (18%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRH 88
           ++  +LVTGGAG+IGSH V +L+EN   + +V DN    + D++   + +          
Sbjct: 10  TSKIVLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEV 68

Query: 89  DVTEPLLIE-------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
           D+ +   +E       +D + H A           P+ Y Y        N++GT+ +L L
Sbjct: 69  DLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRY-Y------HNNILGTVVLLEL 121

Query: 135 AKRVGARILLTSTSE-VYGDPLVHPQ----DESY-WGNVNPIG 171
            ++      + S+S  VYGD    P      E    G  NP G
Sbjct: 122 MQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYG 164

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 20/142 (14%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
           +   +I++ G +GF+GS L+++ +     EV  V        + ++    +   ++ + D
Sbjct: 2   EKVKKIVLIGASGFVGSALLNEALN-RGFEVTAV----VRHPEKIKI--ENEHLKVKKAD 54

Query: 90  VTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RIL 143
           V+       +    D +     P        N        +   L ++   K+ G  R L
Sbjct: 55  VSSLDEVCEVCKGADAVISAFNPGW------NNPDIYDETIKVYLTIIDGVKKAGVNRFL 108

Query: 144 LTST-SEVYGDPLVHPQDESYW 164
           +      ++  P +   D    
Sbjct: 109 MVGGAGSLFIAPGLRLMDSGEV 130

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322

 Score = 66.1 bits (162), Expect = 2e-13
 Identities = 33/156 (21%), Positives = 53/156 (33%), Gaps = 31/156 (19%)

Query: 34  RILVTGGAGFIGSHLVDKLME-----------NEKNEVIVVDNYFTGSKDNLRKWIGHP- 81
           R+ VTGG GF+GS ++  L+E           + + +  V           L    G   
Sbjct: 3   RVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDV---------SFLTNLPGASE 53

Query: 82  RFELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
           +      D++ P      +     I+H A P              K  V G L +L    
Sbjct: 54  KLHFFNADLSNPDSFAAAIEGCVGIFHTASP-IDFAVSEPEEIVTKRTVDGALGILKACV 112

Query: 137 RVGA--RILLTST--SEVYGDPLVHPQDESYWGNVN 168
                 R + TS+  +  +        DES W +V+
Sbjct: 113 NSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVD 148

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348

 Score = 65.6 bits (161), Expect = 4e-13
 Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 33/155 (21%)

Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-----FTGSK----DNLRKWIGHPR 82
             ++LVTGGAG+IGSH V +L+E      +V+DN+       GS       +++  G   
Sbjct: 2   AEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGR-S 59

Query: 83  FELIRHDVTEPLLIE-------VDQIYHLA-------CPASPIFYKYNPVKTIKTNVIGT 128
            E    D+ +   ++          + H A           P+ Y          N+ GT
Sbjct: 60  VEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRV-------NLTGT 112

Query: 129 LNMLGLAKRVGARILLTSTSE-VYGDPLVHPQDES 162
           + +L + K  G + L+ S+S  VYG+P   P DE+
Sbjct: 113 IQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEA 147

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321

 Score = 63.7 bits (156), Expect = 1e-12
 Identities = 45/149 (30%), Positives = 65/149 (43%), Gaps = 31/149 (20%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRH 88
             +MR L+TG AGF+G +L + L   E+N EV        G+          P  E+I  
Sbjct: 10  HGSMRALITGVAGFVGKYLANHLT--EQNVEVF-------GTS--RNNEAKLPNVEMISL 58

Query: 89  DVTEP-----LLIEV--DQIYHLAC----PASPIFYKYNPVKTIKTNVIGTLNMLGLAKR 137
           D+ +      ++ ++  D I+HLA       S  +   N   T  TNV GTL++L   + 
Sbjct: 59  DIMDSQRVKKVISDIKPDYIFHLAAKSSVKDS--W--LNKKGTFSTNVFGTLHVLDAVRD 114

Query: 138 VG--ARILLTSTSEVYGDPLVH--PQDES 162
                RIL   +SE YG  L    P  E 
Sbjct: 115 SNLDCRILTIGSSEEYGMILPEESPVSEE 143

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338

 Score = 63.0 bits (154), Expect = 3e-12
 Identities = 33/156 (21%), Positives = 60/156 (38%), Gaps = 31/156 (19%)

Query: 34  RILVTGGAGFIGSHLVDKLME----------NEKNEVIVVDNYFTGSKDNLRKWIGHPRF 83
              V GG GF+ S LV  L++          +  N+  V          +L +       
Sbjct: 11  TACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKV---------SHLLELQELGDL 61

Query: 84  ELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
           ++ R D+T+       +   D ++H+A P      +      IK  + G +N++    R 
Sbjct: 62  KIFRADLTDELSFEAPIAGCDFVFHVATPV-HFASEDPENDMIKPAIQGVVNVMKACTRA 120

Query: 139 GA--RILLT-STSEVYGDPLVHPQ---DESYWGNVN 168
            +  R++LT S + V  + L       DE  W ++ 
Sbjct: 121 KSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIE 156

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 37/162 (22%), Positives = 59/162 (36%), Gaps = 37/162 (22%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-------TGSKDNLRKWIGHP-- 81
               +LVTG  GF+ SH+V++L+E+          Y             NL+K       
Sbjct: 10  EGSLVLVTGANGFVASHVVEQLLEH---------GYKVRGTARSASKLANLQKRWDAKYP 60

Query: 82  -RFE-LIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
            RFE  +  D+ +      ++     + H+   AS + +     + +   + GTLN L  
Sbjct: 61  GRFETAVVEDMLKQGAYDEVIKGAAGVAHI---ASVVSFSNKYDEVVTPAIGGTLNALRA 117

Query: 135 AKRVGA--RILLT-STSEVYGDPLVHPQ---DESYWGNVNPI 170
           A    +  R +LT ST               DE  W   N  
Sbjct: 118 AAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSW---NLE 156

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337

 Score = 60.0 bits (146), Expect = 3e-11
 Identities = 33/159 (20%), Positives = 61/159 (38%), Gaps = 32/159 (20%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLME----------NEKNEVIVVDNY-FTGSKDNLRKWIG 79
            +  + VTG +GFIGS LV +L+E          +  N   V        ++ +L     
Sbjct: 4   QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHL----- 58

Query: 80  HPRFELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVK-TIKTNVIGTLNMLG 133
                L + D+ +       +     ++H+A P    F   +P    IK  + G L ++ 
Sbjct: 59  ----TLWKADLADEGSFDEAIKGCTGVFHVATPM--DFESKDPENEVIKPTIEGMLGIMK 112

Query: 134 LAKRVGA--RILLTST--SEVYGDPLVHPQDESYWGNVN 168
                    R++ TS+  +    +  +   DES W ++ 
Sbjct: 113 SCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDME 151

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478

 Score = 59.5 bits (144), Expect = 5e-11
 Identities = 36/173 (20%), Positives = 62/173 (35%), Gaps = 44/173 (25%)

Query: 10  HNSASKPPPTPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENE--KNEVI------ 61
             + + P P+P              +L+TG  GF+G +LV +L+        +I      
Sbjct: 61  ATAVNLPGPSPEL----------RTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAE 110

Query: 62  --------VVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEP-----------LLIEVDQ 100
                   +   + +G  + LR +  +   R E++  D +EP           L   VD 
Sbjct: 111 SDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDL 170

Query: 101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVYG 152
           I   A  A    + Y   +    NV GT  ++ +A           ST++V  
Sbjct: 171 IVDSA--AMVNAFPY--HELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGA 219

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364

 Score = 58.6 bits (141), Expect = 1e-10
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 20/135 (14%)

Query: 36  LVTGGAGFIGSHLVDKL----MENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           L+ G  G IG+ L + L          +V  V      ++     W        ++ D++
Sbjct: 5   LIVGVTGIIGNSLAEILPLADTPGGPWKVYGV------ARRTRPAWHEDNPINYVQCDIS 58

Query: 92  EP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---RIL 143
           +P      L  +  + H+         +    +  + N     N+L            I 
Sbjct: 59  DPDDSQAKLSPLTDVTHVFYVTWAN--RSTEQENCEANSKMFRNVLDAVIPNCPNLKHIS 116

Query: 144 LTSTSEVYGDPLVHP 158
           L +  + Y  P    
Sbjct: 117 LQTGRKHYMGPFESY 131

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 24/141 (17%)

Query: 22  PLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-----NLRK 76
            +   +    N  IL+TGG G  G   V K+++    + I+V   +  S+D      +  
Sbjct: 11  SMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIV---Y--SRDELKQSEMAM 65

Query: 77  WIGHPRFELIRHDV-----TEPLLIEVDQIYHLAC----PASPIFYKYNPVKTIKTNVIG 127
               PR      DV         L  VD   H A     P +    +YNP++ IKTN++G
Sbjct: 66  EFNDPRMRFFIGDVRDLERLNYALEGVDICIHAAALKHVPIA----EYNPLECIKTNIMG 121

Query: 128 TLNMLGLAKRVG-ARILLTST 147
             N++    +   ++++  ST
Sbjct: 122 ASNVINACLKNAISQVIALST 142

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236

 Score = 52.7 bits (127), Expect = 7e-09
 Identities = 21/121 (17%), Positives = 50/121 (41%), Gaps = 13/121 (10%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
             MR+LV G  G +  +L+ +L   + +E +        +++   +       +++  ++
Sbjct: 20  QGMRVLVVGANGKVARYLLSELKN-KGHEPVA----MVRNEEQGPELRERGASDIVVANL 74

Query: 91  TEPL---LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
            E        +D +   A  + P        KTI  ++ G +  +  A++ G  R ++ S
Sbjct: 75  EEDFSHAFASIDAVVFAAG-SGP---HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVS 130

Query: 147 T 147
           +
Sbjct: 131 S 131

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 21/144 (14%)

Query: 25  FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-------DNYFTGSKDNLRKW 77
            + F+Q   R+ VTG  GF G  L   L +     V           + F  +   +   
Sbjct: 3   NNSFWQ-GKRVFVTGHTGFKGGWLSLWL-QTMGATVKGYSLTAPTVPSLFETA--RVADG 58

Query: 78  IGHPRFELIRHDVTEPLLIEV--DQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNML 132
           +     ++   +     + E   + ++H+A  A P+    Y   PV+T  TNV+GT+ +L
Sbjct: 59  MQSEIGDIRDQNKLLESIREFQPEIVFHMA--AQPLVRLSYS-EPVETYSTNVMGTVYLL 115

Query: 133 GLAKRVG--ARILLTSTSEVYGDP 154
              + VG    ++  ++ + Y + 
Sbjct: 116 EAIRHVGGVKAVVNITSDKCYDNK 139

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221

 Score = 50.4 bits (120), Expect = 4e-08
 Identities = 14/128 (10%), Positives = 40/128 (31%), Gaps = 14/128 (10%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M+I + G  G  GS ++++      +EV         +   +     H    +++ D+ +
Sbjct: 1   MKIGIIGATGRAGSRILEEAKN-RGHEVTA----IVRNAGKIT--QTHKDINILQKDIFD 53

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTSEVY 151
             L ++     +                 + +V    +++ +       R+L+   +   
Sbjct: 54  LTLSDLSDQNVVVDAYGI------SPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASL 107

Query: 152 GDPLVHPQ 159
                   
Sbjct: 108 QIDEDGNT 115

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253

 Score = 46.8 bits (111), Expect = 8e-07
 Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 24/136 (17%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           +   +LVTG +G  G  +  KL E     V         S     K       ++   D+
Sbjct: 3   NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKG---LVRSAQGKEKI--GGEADVFIGDI 57

Query: 91  TEPLLIE-----VDQIYHLA-------------CPASPIFYKYNPVKTIKTNVIGTLNML 132
           T+   I      +D +  L                  P F   +     + + IG  N +
Sbjct: 58  TDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQI 117

Query: 133 GLAKRVG-ARILLTST 147
             AK  G   I++  +
Sbjct: 118 DAAKVAGVKHIVVVGS 133

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 13/131 (9%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVI-VVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           M+I V G  G  GS +V +      +EV+ VV +     K   R              +T
Sbjct: 1   MKIAVLGATGRAGSAIVAEARR-RGHEVLAVVRD---PQKAADRLGATVATLVKEPLVLT 56

Query: 92  EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEV 150
           E  L  VD +             Y        ++    +++ L +      + +  ++ +
Sbjct: 57  EADLDSVDAVVDALSVPWGSGRGY-------LHLDFATHLVSLLRNSDTLAVFILGSASL 109

Query: 151 YGDPLVHPQDE 161
                 HP   
Sbjct: 110 AMPGADHPMIL 120

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 12/83 (14%)

Query: 24  RFSKFFQSN-MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPR 82
           R S  F  + + + +TG  G +G  L  +L     +EVI +       +    K    P 
Sbjct: 138 RTSTLFDGSPLTVAITGSRGLVGRALTAQLQT-GGHEVIQL----VRKEPKPGKRFWDPL 192

Query: 83  FELIRHDVTEPLLIEVDQIYHLA 105
                      LL   D + HLA
Sbjct: 193 NPASD------LLDGADVLVHLA 209

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 6/61 (9%)

Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
            I V G AG IG  +   L  +    V V D+        L   +        + D  +
Sbjct: 6  WNICVVG-AGKIGQMIAALLKTSSNYSVTVADH----DLAALAV-LNRMGVATKQVDAKD 59

Query: 93 P 93
           
Sbjct: 60 E 60

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 23/122 (18%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
           M+I + G  G +G  L+  L   +                 + +   +   + +  DV  
Sbjct: 1   MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGA--------RKVEQVPQYNNVKAVHFDVDW 52

Query: 92  -----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT 145
                   L  +D I +++               +K ++ G + ++  A++    R +L 
Sbjct: 53  TPEEMAKQLHGMDAIINVSGSG--------GKSLLKVDLYGAVKLMQAAEKAEVKRFILL 104

Query: 146 ST 147
           ST
Sbjct: 105 ST 106

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 27/150 (18%)

Query: 12  SASKPPPTPSPLRFSKFFQSNM-RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS 70
           S+       S  R + +FQ +M  +L+ G  G I  H++++L + +  +  +    F   
Sbjct: 3   SSHHHHHHSSG-RENLYFQGHMKNVLILGAGGQIARHVINQLADKQTIKQTL----FARQ 57

Query: 71  KDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNV 125
              + K       ++I  DV         +   D +Y                 T +   
Sbjct: 58  PAKIHK-PYPTNSQIIMGDVLNHAALKQAMQGQDIVYANL--------------TGEDLD 102

Query: 126 IGTLNMLGLAKRVG-ARILLTSTSEVYGDP 154
           I   +++   K     R++   +  +Y + 
Sbjct: 103 IQANSVIAAMKACDVKRLIFVLSLGIYDEV 132

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 19/132 (14%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
            +I + G  G  G   + + ++    EV V           L    G     ++  DV +
Sbjct: 4   KKIAIFGATGQTGLTTLAQAVQ-AGYEVTV----LVRDSSRLPS-EGPRPAHVVVGDVLQ 57

Query: 93  P-----LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS 146
                  +   D +  L           N +        G  N++   K  G  +++  +
Sbjct: 58  AADVDKTVAGQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDKVVACT 110

Query: 147 TSEVYGDPLVHP 158
           ++ +  DP   P
Sbjct: 111 SAFLLWDPTKVP 122

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} Length = 467

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           +L+  G+GF+   ++D L  N+   V V       +  N +        + I  DVT+ 
Sbjct: 25 NVLL-LGSGFVAQPVIDTLAANDDINVTVACR----TLANAQALAKPSGSKAISLDVTDD 79

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 11/131 (8%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
            +IL+ G  G +G  L  +L   + +EV  +      S   +   +     ++ R D   
Sbjct: 4   SKILIAG-CGDLGLELARRLTA-QGHEVTGL----RRSAQPMPAGVQTLIADVTRPDTLA 57

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY 151
            ++    +I      AS    +Y+      + V G  N L   +      +   S++ VY
Sbjct: 58  SIVHLRPEILVYCVAAS----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVY 113

Query: 152 GDPLVHPQDES 162
           G  +    DE 
Sbjct: 114 GQEVEEWLDED 124

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221

 Score = 42.3 bits (99), Expect = 3e-05
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 2/64 (3%)

Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           I + G AG I   L   L+      + +             + I H R  +I      P
Sbjct: 7  YITILGAAGQIAQXLTATLLTYTDMHITLYGR--QLKTRIPPEIIDHERVTVIEGSFQNP 64

Query: 94 LLIE 97
            +E
Sbjct: 65 GXLE 68

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 3e-05
 Identities = 27/168 (16%), Positives = 53/168 (31%), Gaps = 37/168 (22%)

Query: 27  KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----LRKWIGHPR 82
             F  + +IL+T         + D L       + +  +  T + D     L K++    
Sbjct: 260 NAFNLSCKILLTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315

Query: 83  FELIRHDV--TEPLLI----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAK 136
            +L   +V  T P  +    E  +       A+   +K+     + T +  +LN+L  A 
Sbjct: 316 QDL-PREVLTTNPRRLSIIAESIRDG----LATWDNWKHVNCDKLTTIIESSLNVLEPA- 369

Query: 137 RVGARILLTSTSEVYGDPLVHPQD--------ESYWGNVNPIGMFSFV 176
                       +++    V P             W +V    +   V
Sbjct: 370 ---------EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 7/44 (15%), Positives = 16/44 (36%)

Query: 20 PSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV 63
                  F   N  + + G +G  G  L+ +++E      + +
Sbjct: 6  ALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTL 49

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335

 Score = 41.4 bits (98), Expect = 7e-05
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 17/96 (17%)

Query: 80  HPRFELIRHDVTEP-----LLIEV--DQIYHLAC----PASPIFYKYNPVKTIKTNVIGT 128
               +    D+ +       +I+    ++Y+LA      AS  +    PV T   + +G 
Sbjct: 62  EGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGAS--WN--QPVTTGVVDGLGV 117

Query: 129 LNMLGLAKRVG--ARILLTSTSEVYGDPLVHPQDES 162
            ++L   ++     R    STSE++G      QDE+
Sbjct: 118 THLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN 153

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} Length = 273

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 29/130 (22%), Positives = 47/130 (36%), Gaps = 38/130 (29%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           MR L+TG +G +G  L   L  +E++EVI V                   ++L   D+T+
Sbjct: 1   MRTLITGASGQLGIELSRLL--SERHEVIKVY----------NSSEIQGGYKL---DLTD 45

Query: 93  PLLIE-------VDQIYHLACPASPIFYKY--------NPVKTIKTNVIGTLNMLGLAKR 137
              +E        D I + A  A                  K  K N     +++   K 
Sbjct: 46  FPRLEDFIIKKRPDVIINAA--A------MTDVDKCEIEKEKAYKINAEAVRHIVRAGKV 97

Query: 138 VGARILLTST 147
           + + I+  ST
Sbjct: 98  IDSYIVHIST 107

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 8/31 (25%), Positives = 18/31 (58%)

Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVV 63
          M I++TG  G +G+H+ ++ + N  +   + 
Sbjct: 1  MNIMLTGATGHLGTHITNQAIANHIDHFHIG 31

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRH 88
           +  R+L+ G  G  G HL+D+++      +VI             +    HPR +    
Sbjct: 3  STPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPAR---------KALAEHPRLDNPVG 53

Query: 89 DVTE 92
           + E
Sbjct: 54 PLAE 57

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A Length = 315

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 23/131 (17%), Positives = 41/131 (31%), Gaps = 37/131 (28%)

Query: 32  NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
           N R+LVTG  G +G  +  +  +N  + V           + +              ++ 
Sbjct: 2   NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRARPKFEQV--------------NLL 47

Query: 92  EPLLIE-------VDQIYHLACPASPIFYKY--------NPVKTIKTNVIGTLNMLGLAK 136
           +   +           I H  C A                P    + NV  + N+   A 
Sbjct: 48  DSNAVHHIIHDFQPHVIVH--CAA------ERRPDVVENQPDAASQLNVDASGNLAKEAA 99

Query: 137 RVGARILLTST 147
            VGA ++  S+
Sbjct: 100 AVGAFLIYISS 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	190
d2b69a1	312	c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1	7e-55
d1kewa_	361	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	2e-35
d1db3a_	357	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric	5e-33
d1udca_	338	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	5e-30
d1r6da_	322	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	4e-29
d1orra_	338	c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella	5e-28
d1e6ua_	315	c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras	1e-26
d1oc2a_	346	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	7e-25
d1sb8a_	341	c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W	9e-25
d1t2aa_	347	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H	4e-24
d1z45a2	347	c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep	1e-22
d1rpna_	321	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo	1e-19
d2c5aa1	363	c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T	3e-18
d2blla1	342	c.2.1.2 (A:316-657) Polymyxin resistance protein A	7e-18
d1ek6a_	346	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	1e-16
d1gy8a_	383	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	1e-14
d1n7ha_	339	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr	2e-14
d1rkxa_	356	c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia	3e-14
d1eq2a_	307	c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer	3e-14
d1i24a_	393	c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1	1e-12
d1hdoa_	205	c.2.1.2 (A:) Biliverdin IX beta reductase {Human (	1e-11
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	4e-11
d1qyda_	312	c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {	4e-11
d1n2sa_	298	c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct	6e-11
d2q46a1	252	c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (	8e-11
d1qyca_	307	c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta	1e-10
d1vl0a_	281	c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD	3e-09
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	3e-08
d2bkaa1	232	c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H	4e-07
d2a35a1	212	c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse	8e-06
d1luaa1	191	c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter	9e-05

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  174 bits (442), Expect = 7e-55
 Identities = 107/155 (69%), Positives = 119/155 (76%), Gaps = 4/155 (2%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP 93
           RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EP
Sbjct: 3   RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP 61

Query: 94  LLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD 153
           L IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKRVGAR+LL STSEVYGD
Sbjct: 62  LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGD 121

Query: 154 PLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
           P VHPQ E YWG+VNPIG  +        K + E 
Sbjct: 122 PEVHPQSEDYWGHVNPIGPRACY---DEGKRVAET 153

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score =  125 bits (315), Expect = 2e-35
 Identities = 44/179 (24%), Positives = 75/179 (41%), Gaps = 26/179 (14%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVT 91
           M+IL+TGGAGFIGS +V  +++N ++ V+ +D   + G+ ++L       R+     D+ 
Sbjct: 1   MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADIC 60

Query: 92  EPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA---- 140
           +   I         D + HLA  +        P   I+TN++GT  +L +A++  +    
Sbjct: 61  DSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGE 120

Query: 141 ------RILLTSTSEVYGDPLVHPQDES-----YWGNVNPIGMFSFVLKDGIMKLIGEL 188
                 R    ST EVYGD     + E+      +         S        K   + 
Sbjct: 121 DKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPY---SASKASSDH 176

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

 Score =  118 bits (297), Expect = 5e-33
 Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 26/172 (15%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDN----YFTGSKDNLRK--WIGHPRFELIR 87
             L+TG  G  GS+L + L+E    EV  +      + T   D++ +     +P+F L  
Sbjct: 3   VALITGVTGQDGSYLAEFLLEK-GYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61

Query: 88  HDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG- 139
            D+++   +         D++Y+L   +       +P  T   + +GTL +L   + +G 
Sbjct: 62  GDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGL 121

Query: 140 ---ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
               R    STSE+YG     PQ E+      P   +       + KL    
Sbjct: 122 EKKTRFYQASTSELYGLVQEIPQKETT--PFYPRSPY------AVAKLYAYW 165

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

 Score =  110 bits (275), Expect = 5e-30
 Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 11/142 (7%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRHDV 90
           MR+LVTGG+G+IGSH   +L++N  ++VI++DN     +  L   + +G      +  D+
Sbjct: 1   MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDI 59

Query: 91  TEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RI 142
               L+        +D + H A   +       P++    NV GTL ++   +       
Sbjct: 60  RNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNF 119

Query: 143 LLTSTSEVYGDPLVHPQDESYW 164
           + +S++ VYGD    P  ES+ 
Sbjct: 120 IFSSSATVYGDQPKIPYVESFP 141

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

 Score =  107 bits (269), Expect = 4e-29
 Identities = 52/168 (30%), Positives = 75/168 (44%), Gaps = 20/168 (11%)

Query: 33  MRILVTGGAGFIGSHLVDKLMEN-----EKNEVIVVDNY-FTGSKDNLRKWIGHPRFELI 86
           MR+LVTGGAGFIGSH V +L+         +EVIV+D+  + G++ NL      PR   +
Sbjct: 1   MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFV 60

Query: 87  RHDVTEPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A 140
             D+ +  L+      VD I H A  +             +TNV GT  +L  A   G  
Sbjct: 61  HGDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG 120

Query: 141 RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
           R++  ST++VYG        ES    + P   +         K   +L
Sbjct: 121 RVVHVSTNQVYGSIDSGSWTESSP--LEPNSPY------AASKAGSDL 160

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

 Score =  105 bits (261), Expect = 5e-28
 Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 11/146 (7%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTE 92
           ++L+TGG GF+GS+L    +     ++IV DN    G+ DNL        FE +  D+  
Sbjct: 2   KLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRN 60

Query: 93  PLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLA--KRVGARIL 143
              +         D  +HLA   +      NP    + NV GTLN+L           I+
Sbjct: 61  KNDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNII 120

Query: 144 LTSTSEVYGDPLVHPQDESYWGNVNP 169
            +ST++VYGD   +  +E+       
Sbjct: 121 YSSTNKVYGDLEQYKYNETETRYTCV 146

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (250), Expect = 1e-26
 Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 18/160 (11%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           +  R+ + G  G +GS +  +L +   +  +V+       +D L         +    + 
Sbjct: 1   AKQRVFIAGHRGMVGSAIRRQLEQ-RGDVELVLRT-----RDELNLLDSRAVHDFFASE- 53

Query: 91  TEPLLIEVDQIYHLACPASP-IFYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARILLTSTS 148
                  +DQ+Y  A      +     P   I  N++   N++  A +    ++L   +S
Sbjct: 54  ------RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSS 107

Query: 149 EVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
            +Y      P  ES                  I K+ G  
Sbjct: 108 CIYPKLAKQPMAESELLQGTLEPTNEPY---AIAKIAGIK 144

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 97.0 bits (240), Expect = 7e-25
 Identities = 48/166 (28%), Positives = 66/166 (39%), Gaps = 10/166 (6%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT 91
             I+VTGGAGFIGS+ V  +  N  +  V V+D           + I   R EL+  D+ 
Sbjct: 3   KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIA 62

Query: 92  EPLLIE-----VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
           +  L++      D I H A  +       +P   I TN IGT  +L  A++   R    S
Sbjct: 63  DAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVS 122

Query: 147 TSEVYGD-PLVHPQDESYWGNVNPIGMFSFVLKD---GIMKLIGEL 188
           T EVYGD PL         G        +           K   +L
Sbjct: 123 TDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDL 168

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 96.6 bits (239), Expect = 9e-25
 Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 14/161 (8%)

Query: 26  SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW------IG 79
            +        L+TG AGFIGS+L++ L++    +V+ +DN+ TG + NL +         
Sbjct: 10  KELPAQPKVWLITGVAGFIGSNLLETLLK-LDQKVVGLDNFATGHQRNLDEVRSLVSEKQ 68

Query: 80  HPRFELIRHDVTEPLLI-----EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGL 134
              F+ I+ D+            VD + H A   S      +P+ +  TN+ G LNML  
Sbjct: 69  WSNFKFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIA 128

Query: 135 AKRVGARILL-TSTSEVYGDPLVHPQDESYWGN-VNPIGMF 173
           A+    +     ++S  YGD    P+ E   G  ++P  + 
Sbjct: 129 ARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVT 169

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.0 bits (235), Expect = 4e-24
 Identities = 41/172 (23%), Positives = 64/172 (37%), Gaps = 27/172 (15%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDN----YFTGSKDNLRKWIG---HPRFELIR 87
            L+TG  G  GS+L + L+E    EV  +      + TG  ++L K          +L  
Sbjct: 4   ALITGITGQDGSYLAEFLLEK-GYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHY 62

Query: 88  HDVTEPLL-------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG- 139
            D+T+          ++  +IY+L   +           T   + +GTL +L   K  G 
Sbjct: 63  GDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGL 122

Query: 140 ---ARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
               +    STSE+YG     PQ E+      P   +      G  KL    
Sbjct: 123 INSVKFYQASTSELYGKVQEIPQKETTP--FYPRSPY------GAAKLYAYW 166

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.9 bits (224), Expect = 1e-22
 Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 11/140 (7%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--KWIGHPRFELIRHDVTE 92
           +LVTGGAG+IGSH V +L+EN   + +V DN    + D++   + +          D+ +
Sbjct: 4   VLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD 62

Query: 93  PLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILL- 144
              +E       +D + H A   +       P++    N++GT+ +L L ++      + 
Sbjct: 63  RKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVF 122

Query: 145 TSTSEVYGDPLVHPQDESYW 164
           +S++ VYGD    P      
Sbjct: 123 SSSATVYGDATRFPNMIPIP 142

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 82.4 bits (202), Expect = 1e-19
 Identities = 31/160 (19%), Positives = 59/160 (36%), Gaps = 11/160 (6%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTE 92
             LVTG  G  G++L   L+E     V  +     + ++  LR+       +    D+ +
Sbjct: 2   SALVTGITGQDGAYLAKLLLEK-GYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMAD 60

Query: 93  PLLI-------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARIL 143
              +       +  ++Y+LA  +        PV T   + +G  ++L   ++     R  
Sbjct: 61  ACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFY 120

Query: 144 LTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMK 183
             STSE++G      QDE+           + +    I  
Sbjct: 121 QASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITV 160

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 78.8 bits (193), Expect = 3e-18
 Identities = 40/178 (22%), Positives = 70/178 (39%), Gaps = 15/178 (8%)

Query: 19  TPSPLRFSKFFQS-NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW 77
           T   L   +++ S N++I +TG  GFI SH+  +L   E + VI  D       +++ + 
Sbjct: 1   TYKELEREQYWPSENLKISITGAGGFIASHIARRLKH-EGHYVIASDW---KKNEHMTED 56

Query: 78  IGHPRFELIRHDVTEPLLIEVDQIYHLACPASP----IFYKYNPVKTIKTNVIGTLNMLG 133
           +    F L+   V E  L   + + H+   A+      F + N    +  N + + NM+ 
Sbjct: 57  MFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIE 116

Query: 134 LAKRVG-ARILLTSTSEVYG--DPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGEL 188
            A+  G  R    S++ +Y     L          +  P          G+ KL  E 
Sbjct: 117 AARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAF---GLEKLATEE 171

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

 Score = 77.7 bits (189), Expect = 7e-18
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT- 91
           MR+L+ G  GFIG+HL ++L+  +  EV  +D       D + +++ HP F  +  D++ 
Sbjct: 1   MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEGDISI 56

Query: 92  -----EPLLIEVDQIYHLACPASPIFYKYNP 117
                E  + + D +  L   A+PI Y  NP
Sbjct: 57  HSEWIEYHVKKCDVVLPLVAIATPIEYTRNP 87

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (181), Expect = 1e-16
 Identities = 31/146 (21%), Positives = 59/146 (40%), Gaps = 16/146 (10%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR--------KWIGHPRFEL 85
           ++LVTGGAG+IGSH V +L+E      +V+DN+    +            + +     E 
Sbjct: 4   KVLVTGGAGYIGSHTVLELLEA-GYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62

Query: 86  IRHDVTEPLLIEVDQ-------IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV 138
              D+ +   ++          + H A   +       P+   + N+ GT+ +L + K  
Sbjct: 63  EEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAH 122

Query: 139 GARILLTSTSEVYGDPLVHPQDESYW 164
           G + L+ S+S        +   +   
Sbjct: 123 GVKNLVFSSSATVYGNPQYLPLDEAH 148

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

 Score = 68.7 bits (166), Expect = 1e-14
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 18/94 (19%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS------------------KD 72
           S+MR+LV GGAG+IGSH V  L+ +  + V++VD+                        D
Sbjct: 1   SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSD 60

Query: 73  NLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC 106
             +         L   DV     +      H   
Sbjct: 61  GPKPPWADRYAALEVGDVRNEDFLNGVFTRHGPI 94

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 67.8 bits (164), Expect = 2e-14
 Identities = 27/152 (17%), Positives = 51/152 (33%), Gaps = 20/152 (13%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDN----YFTGSKDNLR---KWIGHPRFELI 86
             L+TG  G  GS+L + L+  +  EV  +      + T   +++      +     +L 
Sbjct: 3   IALITGITGQDGSYLTEFLLG-KGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLH 61

Query: 87  RHDVTEPLLIE-------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG 139
             D+T+   +         D++Y+LA  +        P  T      G L +L   +   
Sbjct: 62  YADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHT 121

Query: 140 AR-----ILLTSTSEVYGDPLVHPQDESYWGN 166
                      + S         PQ E+   +
Sbjct: 122 IDSGRTVKYYQAGSSEMFGSTPPPQSETTPFH 153

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

 Score = 67.6 bits (163), Expect = 3e-14
 Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 2/81 (2%)

Query: 26  SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFEL 85
           + F+Q   R+ VTG  GF G  L   L       V                       + 
Sbjct: 3   NSFWQ-GKRVFVTGHTGFKGGWLSLWLQTM-GATVKGYSLTAPTVPSLFETARVADGMQS 60

Query: 86  IRHDVTEPLLIEVDQIYHLAC 106
              D+ +   +          
Sbjct: 61  EIGDIRDQNKLLESIREFQPE 81

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

 Score = 67.0 bits (161), Expect = 3e-14
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 35  ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL 94
           I+VTGGAGFIGS++V  L +    +++VVDN   G+K      + +    + + D    +
Sbjct: 2   IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL-NIADYMDKEDFLIQI 60

Query: 95  LIEVDQIYHLACP 107
           +   +     A  
Sbjct: 61  MAGEEFGDVEAIF 73

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 63.1 bits (151), Expect = 1e-12
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 19/83 (22%)

Query: 33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR----------------- 75
           R++V GG G+ G      L +    EV +VDN      D+                   
Sbjct: 2  SRVMVIGGDGYCGWATALHLSKK-NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISR 60

Query: 76 -KWIGHPRFELIRHDVTEPLLIE 97
           K +     EL   D+ +   + 
Sbjct: 61 WKALTGKSIELYVGDICDFEFLA 83

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (141), Expect = 1e-11
 Identities = 17/135 (12%), Positives = 43/135 (31%), Gaps = 9/135 (6%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
           +  +I + G  G  G   + + ++    EV V+    +       +       ++++   
Sbjct: 2   AVKKIAIFGATGQTGLTTLAQAVQ-AGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAAD 60

Query: 91  TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSE 149
            +  +   D +  L           N +        G  N++   K  G   ++  +++ 
Sbjct: 61  VDKTVAGQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAF 113

Query: 150 VYGDPLVHPQDESYW 164
           +  DP   P      
Sbjct: 114 LLWDPTKVPPRLQAV 128

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 58.7 bits (140), Expect = 4e-11
 Identities = 28/137 (20%), Positives = 51/137 (37%), Gaps = 8/137 (5%)

Query: 34  RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHP----RFELIRHD 89
            +LVTG  GF+ SH+V++L+E+         +       NL+K             +  D
Sbjct: 13  LVLVTGANGFVASHVVEQLLEHGYKVRGTARS--ASKLANLQKRWDAKYPGRFETAVVED 70

Query: 90  VTEPLLIE--VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST 147
           + +    +  +     +A  AS + +     + +   + GTLN L  A    +      T
Sbjct: 71  MLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLT 130

Query: 148 SEVYGDPLVHPQDESYW 164
           S      +  P  E  +
Sbjct: 131 SSTVSALIPKPNVEGIY 147

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

 Score = 58.2 bits (139), Expect = 4e-11
 Identities = 17/138 (12%), Positives = 42/138 (30%), Gaps = 9/138 (6%)

Query: 30  QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS---KDNLRKWIGHPRFELI 86
               R+L+ GG G+IG  +V+  +    +   V+      S   K  +  +      +LI
Sbjct: 1   DKKSRVLIVGGTGYIGKRIVNASIS-LGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI 59

Query: 87  RHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS 146
              + +   +           ++      +     +  +     +  + +    +  L S
Sbjct: 60  EASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKL-----VEAIKEAGNIKRFLPS 114

Query: 147 TSEVYGDPLVHPQDESYW 164
              +  D + H       
Sbjct: 115 EFGMDPDIMEHALQPGSI 132

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

 Score = 58.0 bits (138), Expect = 6e-11
 Identities = 24/132 (18%), Positives = 42/132 (31%), Gaps = 11/132 (8%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE 92
           M IL+ G  G +G  L   L       +I +D +      +          + +   V +
Sbjct: 1   MNILLFGKTGQVGWELQRSL--APVGNLIALDVHSKEFCGDFSN------PKGVAETVRK 52

Query: 93  PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG 152
              +  D I + A   +    +  P      N      +   A   GA ++  ST  V+ 
Sbjct: 53  ---LRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFP 109

Query: 153 DPLVHPQDESYW 164
                P  E+  
Sbjct: 110 GTGDIPWQETDA 121

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 57.1 bits (136), Expect = 8e-11
 Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 31  SNM-RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRH 88
           +N+  +LVTG +G  G  +  KL E   ++ +      +    + +         ++   
Sbjct: 1   ANLPTVLVTGASGRTGQIVYKKLKEG-SDKFVAKGLVRSAQGKEKIGGEADVFIGDITDA 59

Query: 89  DVTEPLLIEVDQIYHLACPASPIFYKYNPVKTI 121
           D   P    +D +  L      +   ++P K  
Sbjct: 60  DSINPAFQGIDALVILTSAVPKMKPGFDPTKGG 92

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

 Score = 56.7 bits (135), Expect = 1e-10
 Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR----KWIGHPRFELI 86
          S  RIL+ G  G+IG H+    ++   +   ++    T S ++ +    +        ++
Sbjct: 2  SRSRILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTASSNSEKAQLLESFKASGANIV 60

Query: 87 RHDV 90
             +
Sbjct: 61 HGSI 64

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 52.9 bits (125), Expect = 3e-09
 Identities = 29/134 (21%), Positives = 48/134 (35%), Gaps = 18/134 (13%)

Query: 33  MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT--GSKDNLRKWIGHPRFELIRHDV 90
           M+IL+TG  G +G  +  +L + +  EVI  D       +   + K+    +        
Sbjct: 2   MKILITGANGQLGREIQKQL-KGKNVEVIPTDVQDLDITNVLAVNKFFNEKKP------- 53

Query: 91  TEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEV 150
                   + + + A   +    +       K N IG  N+   A  VGA I+  ST  V
Sbjct: 54  --------NVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYV 105

Query: 151 YGDPLVHPQDESYW 164
           +      P  E   
Sbjct: 106 FDGEAKEPITEFDE 119

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 50.4 bits (119), Expect = 3e-08
 Identities = 10/64 (15%), Positives = 17/64 (26%), Gaps = 3/64 (4%)

Query: 30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHD 89
          Q    I V G  G  G+ L+        +    V +          +    P   L +  
Sbjct: 1  QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS---LKGLIAEELQAIPNVTLFQGP 57

Query: 90 VTEP 93
          +   
Sbjct: 58 LLNN 61

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (109), Expect = 4e-07
 Identities = 7/37 (18%), Positives = 16/37 (43%)

Query: 27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV 63
           F   N  + + G +G  G  L+ +++E      + +
Sbjct: 9  DFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTL 45

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 42.4 bits (98), Expect = 8e-06
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 34 RILVTGGAGFIGSHLVDKLMENEKNEVIVV 63
          R+L+ G  G  G HL+D+++       ++ 
Sbjct: 4  RVLLAGATGLTGEHLLDRILSEPTLAKVIA 33

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

 Score = 39.1 bits (90), Expect = 9e-05
 Identities = 8/116 (6%), Positives = 23/116 (19%), Gaps = 6/116 (5%)

Query: 31  SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV 90
              + +V  G G +G      L       V+         +          +  +   + 
Sbjct: 22  KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKA-QAAADSVNKRFKVNVTAAET 80

Query: 91  T-----EPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR 141
                    +     ++        +  +          ++   N        G  
Sbjct: 81  ADDASRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGID 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	190
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	99.96
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	99.95
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.94
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.93
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	99.92
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.92
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	99.92
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	99.91
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	99.91
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	99.9
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.9
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.89
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.89
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	99.89
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.88
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.87
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.87
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	99.87
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	99.85
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	99.85
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.83
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.76
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	99.75
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.73
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	99.7
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	99.7
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	99.7
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	99.69
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	99.69
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	99.69
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	99.69
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	99.69
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	99.68
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	99.68
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	99.67
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	99.67
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	99.67
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	99.67
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	99.67
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	99.67
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	99.67
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	99.66
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	99.66
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	99.66
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	99.66
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	99.66
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	99.65
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	99.65
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	99.65
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	99.64
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	99.64
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	99.64
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	99.64
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	99.64
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	99.63
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	99.63
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	99.62
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	99.62
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	99.61
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	99.61
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	99.61
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	99.61
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	99.61
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	99.6
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	99.59
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	99.57
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	99.57
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	99.57
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	99.56
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	99.56
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	99.55
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	99.54
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	99.54
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	99.52
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	99.5
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	99.49
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	99.48
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	99.48
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.47
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	99.47
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	99.45
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	99.44
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	99.43
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	99.41
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	99.37
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	99.29
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	99.25
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	99.24
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.22
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	99.22
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	99.09
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	99.09
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	99.06
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	99.03
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	98.94
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	98.94
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	98.8
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.18
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.18
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.17
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	98.06
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.05
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.01
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.0
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.92
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.89
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.83
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.83
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.83
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.82
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.81
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.8
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.8
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.79
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.74
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.7
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	97.69
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.68
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.55
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.52
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.45
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.41
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.41
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.39
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.35
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.34
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.32
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.26
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.21
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.14
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.07
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.03
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.99
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.92
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.92
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.91
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	96.85
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	96.84
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.82
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.81
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.8
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.69
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.67
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.62
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	96.62
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.47
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.46
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.4
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.4
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.34
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	96.34
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.28
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	96.21
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.15
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.11
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.07
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	96.0
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	95.92
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	95.92
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.91
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	95.9
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.85
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.77
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.7
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.66
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.62
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.61
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.54
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.47
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.45
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.4
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.34
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.26
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	95.24
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	95.16
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.14
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.11
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	94.99
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	94.94
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.9
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.89
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	94.85
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.81
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.79
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	94.76
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.68
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	94.67
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.66
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.58
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.52
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.51
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.51
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	94.44
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.4
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	94.34
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.22
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.22
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.2
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	94.16
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.11
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	94.11
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.11
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.04
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	93.98
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.97
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.96
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.96
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	93.94
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.89
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.76
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	93.74
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.68
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	93.68
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	93.66
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	93.63
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	93.62
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.56
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	93.53
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	93.47
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.45
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.35
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.29
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.19
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.15
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	93.13
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.07
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.06
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.71
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.66
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	92.51
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	92.49
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	92.42
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	92.23
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	92.16
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.1
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	92.04
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	91.95
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	91.92
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	91.63
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.26
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	91.2
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	90.84
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	90.71
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	90.65
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	90.64
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	90.6
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	90.53
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	90.37
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	90.0
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	89.79
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	89.76
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	88.96
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	88.66
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	88.61
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	88.2
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	87.75
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	87.69
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	87.58
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	87.46
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.29
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	87.26
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	87.15
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	87.12
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	86.89
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	86.74
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	86.61
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	86.07
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	84.96
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	84.49
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	83.93
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	83.79
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	83.73
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	83.45
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	82.78
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	82.53
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	82.3
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	82.3
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	81.88
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	81.77
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	81.59
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	81.56
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	81.18
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	80.73
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	80.61
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	80.55
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	80.3
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	80.05

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=166.53  Aligned_cols=153  Identities=70%  Similarity=1.101  Sum_probs=133.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf             87999756555779999999960998599981788899234543415996599755566634578678998168878852
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF  112 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~~~~~~~  112 (190)
                      ++|+||||+||||+++++.|+++ |++|+++++........+........+.....|+.+....++|+|||+|+......
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlAa~~~~~~   80 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMD-GHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPN   80 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCCSHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCHHHHHHHCCCCCEEEEEHHHHHHHHCCCCEEEECCCCCCCHH
T ss_conf             89999789738999999999978-69899996887677777887447775389736777887749999998863477436


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             12580568998779999999999873990999956602179998988888866789788652003466888865314
Q 029656          113 YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGELG  189 (190)
Q Consensus       113 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~~~y~~~~~sK~~~E~~  189 (190)
                      +..++.+.+++|+.++.++++++++.++|+||+||.++|+.+...+++|+.+...+|..|.+.|   +.+|+.+|+.
T Consensus        81 ~~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y---~~sK~~~E~~  154 (312)
T d2b69a1          81 YMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACY---DEGKRVAETM  154 (312)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHH---HHHHHHHHHH
T ss_pred             HHHCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHEECCCCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHHHH
T ss_conf             7759999999999999999999997099199997700240888898775545778989986579---9999999999

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=6.8e-27  Score=157.10  Aligned_cols=148  Identities=26%  Similarity=0.312  Sum_probs=119.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCH-HHHHHH-----HCCCCEEEEECCCCCCCCC-------CCC
Q ss_conf             879997565557799999999609985999817888992-345434-----1599659975556663457-------867
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKW-----IGHPRFELIRHDVTEPLLI-------EVD   99 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~-----~~~~~~~~~~~D~~~~~~~-------~~d   99 (190)
                      |++|||||+||||++|+++|++. |++|++++|...... ..+..+     ....++.++++|+.|....       ++|
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEK-GYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHCCCCC
T ss_conf             88999688868999999999978-69899997897555556688887403303897599982067979988887525987


Q ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC----EEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             89981688788521258056899877999999999987399----09999566021799989888888667897886520
Q 029656          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSF  175 (190)
Q Consensus       100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~~~  175 (190)
                      +|||+|+......+..++..++++|+.+|.+++++|++.++    |||++||.++||.+...+++|+     ++..|.+.
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~-----~~~~P~~~  155 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSP  155 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTT-----SCCCCCSH
T ss_pred             EEEEEECCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHCCCCCCCCCCC-----CCCCCCCH
T ss_conf             8998520355344655999999999999999999999848998868999984565188988895899-----99999886


Q ss_pred             HHHHHHHHHHHHHC
Q ss_conf             03466888865314
Q 029656          176 VLKDGIMKLIGELG  189 (190)
Q Consensus       176 y~~~~~sK~~~E~~  189 (190)
                      |   +.+|+.+|+.
T Consensus       156 Y---~~sK~~~E~~  166 (357)
T d1db3a_         156 Y---AVAKLYAYWI  166 (357)
T ss_dssp             H---HHHHHHHHHH
T ss_pred             H---HHHHHHHHHH
T ss_conf             9---9999999999

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.6e-26  Score=154.05  Aligned_cols=149  Identities=30%  Similarity=0.434  Sum_probs=119.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH--HCCCCEEEEECCCCCCCCC-------CCCEEEE
Q ss_conf             879997565557799999999609985999817888992345434--1599659975556663457-------8678998
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPLLI-------EVDQIYH  103 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~-------~~d~vi~  103 (190)
                      |+||||||+||||++|++.|+++ |++|++++|........+...  .....+.++++|+.+....       ++|+|||
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViH   79 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIH   79 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEE
T ss_conf             97999898878999999999978-49799997888752656777886247887799901689899999874169989999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             1688788521258056899877999999999987399-099995660217999898888886678978865200346688
Q 029656          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIM  182 (190)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~~~y~~~~~s  182 (190)
                      +|+......+..+++..+++|+.++.+++++|++.++ ++|++||..+|+.....+..|+.    .+..+...|   +.+
T Consensus        80 lAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~----~~~~p~~~Y---~~s  152 (338)
T d1udca_          80 FAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESF----PTGTPQSPY---GKS  152 (338)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTS----CCCCCSSHH---HHH
T ss_pred             CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCEEECCCCCCCCCCCC----CCCCCCCHH---HHH
T ss_conf             9876662657769999988679999999999997198789953753697154344320024----467885227---888


Q ss_pred             HHHHHHC
Q ss_conf             8865314
Q 029656          183 KLIGELG  189 (190)
Q Consensus       183 K~~~E~~  189 (190)
                      |+.+|+.
T Consensus       153 K~~~e~~  159 (338)
T d1udca_         153 KLMVEQI  159 (338)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             7656678

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.5e-25  Score=148.85  Aligned_cols=147  Identities=28%  Similarity=0.429  Sum_probs=117.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH--HCCCCEEEEECCCCCCCCC-------CCCEEEE
Q ss_conf             879997565557799999999609985999817888992345434--1599659975556663457-------8678998
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW--IGHPRFELIRHDVTEPLLI-------EVDQIYH  103 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~~~D~~~~~~~-------~~d~vi~  103 (190)
                      |.||||||+||||++|+++|+++ |++|+++++............  .....+.++.+|+.+.+..       ++|+|||
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vih   80 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIEN-GYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIH   80 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCCEEEE
T ss_conf             89999188747999999999978-69599997888762667776776413687599964678799998775049978878


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCCCCC----CCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             1688788521258056899877999999999987399-0999956602179998----9888888667897886520034
Q 029656          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLV----HPQDESYWGNVNPIGMFSFVLK  178 (190)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~~~~----~~~~E~~~~~~~~~~~~~~y~~  178 (190)
                      +|+...+....+++..++.+|+.++.++++++++.++ ++|++||..+|+....    .+++|+     .+..+.+.|  
T Consensus        81 lAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~-----~~~~p~~~Y--  153 (347)
T d1z45a2          81 FAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEE-----CPLGPTNPY--  153 (347)
T ss_dssp             CCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTT-----SCCCCCSHH--
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCEEEECCCCCCCCCCCCCCC-----CCCCCCCHH--
T ss_conf             5315556420147641013232226889999996265368860220010576568887762235-----678988766--


Q ss_pred             HHHHHHHHHH
Q ss_conf             6688886531
Q 029656          179 DGIMKLIGEL  188 (190)
Q Consensus       179 ~~~sK~~~E~  188 (190)
                       +.+|..+|+
T Consensus       154 -~~sK~~~E~  162 (347)
T d1z45a2         154 -GHTKYAIEN  162 (347)
T ss_dssp             -HHHHHHHHH
T ss_pred             -HHHHHHHHH
T ss_conf             -757889999

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7e-25  Score=146.52  Aligned_cols=148  Identities=26%  Similarity=0.260  Sum_probs=117.1

Q ss_pred             CEE-EEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCH-HHHHHHH------CCCCEEEEECCCCCCCC-------CC
Q ss_conf             879-997565557799999999609985999817888992-3454341------59965997555666345-------78
Q 029656           33 MRI-LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWI------GHPRFELIRHDVTEPLL-------IE   97 (190)
Q Consensus        33 ~~v-lItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~------~~~~~~~~~~D~~~~~~-------~~   97 (190)
                      |+| |||||+||||++|+++|+++ |++|++++|...... ..+..+.      ....+.++.+|+.+...       .+
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~-g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   79 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEK-GYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK   79 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHHHHCHHHHCCCCCEEEEEECCCCHHHHHHHHHCC
T ss_conf             988999047768999999999978-3989999888754550127887535355324781899914678065478886356


Q ss_pred             CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC----EEEEEECCEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6789981688788521258056899877999999999987399----099995660217999898888886678978865
Q 029656           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA----RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMF  173 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~----~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~  173 (190)
                      +++++|+++.........++...+++|+.++.++++++++.+.    ++|++||.++||.+...+++|+     +|+.|.
T Consensus        80 ~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~P~  154 (347)
T d1t2aa_          80 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPR  154 (347)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTT-----SCCCCC
T ss_pred             CCEEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHEECCCCCCCCCCC-----CCCCCC
T ss_conf             531332000135622321315443568799999999999808998709999604420437889997899-----999998


Q ss_pred             CCHHHHHHHHHHHHHC
Q ss_conf             2003466888865314
Q 029656          174 SFVLKDGIMKLIGELG  189 (190)
Q Consensus       174 ~~y~~~~~sK~~~E~~  189 (190)
                      +.|   +++|+.+|+.
T Consensus       155 ~~Y---g~sK~~aE~~  167 (347)
T d1t2aa_         155 SPY---GAAKLYAYWI  167 (347)
T ss_dssp             SHH---HHHHHHHHHH
T ss_pred             CHH---HHHHHHHHHH
T ss_conf             989---9999999999

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.92  E-value=6.8e-25  Score=146.60  Aligned_cols=153  Identities=29%  Similarity=0.382  Sum_probs=117.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCE-EEEECCCCC-CCHHHHHHHHCCCCEEEEECCCCCCCCC-------CCCEEEE
Q ss_conf             879997565557799999999609985-999817888-9923454341599659975556663457-------8678998
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNE-VIVVDNYFT-GSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYH  103 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~-v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~-------~~d~vi~  103 (190)
                      |+||||||+||||++|+++|++. +++ |.++++... .....+..+....++.++.+|+++....       ++|+|||
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~-g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKN-TQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHH-CSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             97999888767999999999977-99789998479864427778765316884799865789899999997579999998


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC----------CEEEEEECCEECCCCCCCCCCCCCC-----CCCC
Q ss_conf             168878852125805689987799999999998739----------9099995660217999898888886-----6789
Q 029656          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG----------ARILLTSTSEVYGDPLVHPQDESYW-----GNVN  168 (190)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~----------~~ii~~SS~~v~~~~~~~~~~E~~~-----~~~~  168 (190)
                      +|+...+..+..++..++++|+.++.++++.|.+.+          .++|++||..+||.....+..|...     .+.+
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~  159 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETT  159 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTS
T ss_pred             CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             96016666677599999999999999999999984122210146854999934410117786677543456788756688


Q ss_pred             CCCCCCCHHHHHHHHHHHHHC
Q ss_conf             788652003466888865314
Q 029656          169 PIGMFSFVLKDGIMKLIGELG  189 (190)
Q Consensus       169 ~~~~~~~y~~~~~sK~~~E~~  189 (190)
                      +..+.+.|   +.+|+.+|+.
T Consensus       160 ~~~p~s~Y---g~sK~~~E~~  177 (361)
T d1kewa_         160 AYAPSSPY---SASKASSDHL  177 (361)
T ss_dssp             CCCCCSHH---HHHHHHHHHH
T ss_pred             CCCCCCHH---HHHHHHHHHH
T ss_conf             99999989---9999999999

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=2.1e-24  Score=143.97  Aligned_cols=151  Identities=30%  Similarity=0.363  Sum_probs=123.2

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH------HCCCCEEEEECCCCCCC-----CCCC
Q ss_conf             279879997565557799999999609985999817888992345434------15996599755566634-----5786
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW------IGHPRFELIRHDVTEPL-----LIEV   98 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~------~~~~~~~~~~~D~~~~~-----~~~~   98 (190)
                      .+.|++|||||+||||++|+++|++. |++|++++|........+..+      .....+.++.+|..+..     ...+
T Consensus        14 ~~~k~iLVTG~tGfIGs~lv~~L~~~-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~   92 (341)
T d1sb8a_          14 AQPKVWLITGVAGFIGSNLLETLLKL-DQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV   92 (341)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf             89998999668878999999999978-69899997888752556788887541002577268840222222222222222


Q ss_pred             CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             789981688788521258056899877999999999987399-0999956602179998988888866789788652003
Q 029656           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVL  177 (190)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~~~y~  177 (190)
                      +.++|+++......+..++...+.+|+.++.+++++|.+.++ ++|++||..+||.....+++|+     .|..+.+.| 
T Consensus        93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y-  166 (341)
T d1sb8a_          93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVED-----TIGKPLSPY-  166 (341)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCSHH-
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHEEEHHHHHHHHHHHHCCCCEEEECCCCEEECCCCCCCCCCC-----CCCCCCCCC-
T ss_conf             22233343355664346853000010123788999999659846997264216578899995477-----889988800-


Q ss_pred             HHHHHHHHHHHC
Q ss_conf             466888865314
Q 029656          178 KDGIMKLIGELG  189 (190)
Q Consensus       178 ~~~~sK~~~E~~  189 (190)
                        +.+|+.+|+.
T Consensus       167 --~~sK~~~E~~  176 (341)
T d1sb8a_         167 --AVTKYVNELY  176 (341)
T ss_dssp             --HHHHHHHHHH
T ss_pred             --HHHHHHHHHH
T ss_conf             --5889999999

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.91  E-value=2e-24  Score=144.16  Aligned_cols=148  Identities=35%  Similarity=0.441  Sum_probs=118.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCE------EEEECCCC-CCCHHHHHHHHCCCCEEEEECCCCCCC-----CCCCCE
Q ss_conf             879997565557799999999609985------99981788-899234543415996599755566634-----578678
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNE------VIVVDNYF-TGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQ  100 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~------v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~  100 (190)
                      |+|+||||+|+||+++++.|+++ |+.      +..+++.. ......+........+.++.+|..+..     ...+|.
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~-g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~   79 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAG-AYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDA   79 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-SCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEEECCCCCHHHHCCCCCCCE
T ss_conf             97999888778999999999977-99766776599996787443476766541278769998101000111103454434


Q ss_pred             EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             9981688788521258056899877999999999987399-099995660217999898888886678978865200346
Q 029656          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKD  179 (190)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~~~y~~~  179 (190)
                      |+|+|+.........++.+.+++|+.++.++++.+.+.+. ++|++||.++|+.....+++|+     .+..+.+.|   
T Consensus        80 vi~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~-----~~~~p~~~Y---  151 (322)
T d1r6da_          80 IVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPY---  151 (322)
T ss_dssp             EEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT-----SCCCCCSHH---
T ss_pred             EEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEECCCCCCCCCCC-----CCCCCCCHH---
T ss_conf             786101122312122357776614888999999999739866999631156257888997888-----999999878---


Q ss_pred             HHHHHHHHHC
Q ss_conf             6888865314
Q 029656          180 GIMKLIGELG  189 (190)
Q Consensus       180 ~~sK~~~E~~  189 (190)
                      +.+|..+|..
T Consensus       152 ~~sK~~~E~~  161 (322)
T d1r6da_         152 AASKAGSDLV  161 (322)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9899999999

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.1e-23  Score=140.25  Aligned_cols=149  Identities=26%  Similarity=0.387  Sum_probs=116.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCC------CCCCCEEEECCC
Q ss_conf             87999756555779999999960998599981788899234543415996599755566634------578678998168
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~~d~vi~~a~  106 (190)
                      |+||||||+||||++++++|++++..+|+++++....    ...+....++.++++|+++..      ..++|+|||+|+
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~----~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~   76 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDA----ISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA   76 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGG----GGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCC----HHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf             9799989875899999999997799889999689724----466536898099978057859999999858982114333


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCCCCCCCCCCC--CCCCCCCCCHHHHHHHHH
Q ss_conf             878852125805689987799999999998739909999566021799989888888667--897886520034668888
Q 029656          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGN--VNPIGMFSFVLKDGIMKL  184 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~v~~~~~~~~~~E~~~~~--~~~~~~~~~y~~~~~sK~  184 (190)
                      .........++...+..|+.++.++++++.+.+.+++++||..+|+........|..+..  .....+...|   +.+|.
T Consensus        77 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y---~~sK~  153 (342)
T d2blla1          77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIY---SVSKQ  153 (342)
T ss_dssp             CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHH---HHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH---HHCCC
T ss_conf             322233346875222333222221100000222222233332222222222222222211223468974113---32144


Q ss_pred             HHHH
Q ss_conf             6531
Q 029656          185 IGEL  188 (190)
Q Consensus       185 ~~E~  188 (190)
                      .+|+
T Consensus       154 ~~E~  157 (342)
T d2blla1         154 LLDR  157 (342)
T ss_dssp             HHHH
T ss_pred             CHHH
T ss_conf             2222

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.90  E-value=2.6e-23  Score=138.29  Aligned_cols=148  Identities=24%  Similarity=0.229  Sum_probs=119.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-HHHHHHHHCCCCEEEEECCCCCCCCC-------CCCEEEEC
Q ss_conf             87999756555779999999960998599981788899-23454341599659975556663457-------86789981
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHL  104 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~-------~~d~vi~~  104 (190)
                      ++||||||+||||++|++.|+++ |++|++++|..... ...+..+....++.++.+|+.+....       ..++++|+
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~-g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~   79 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEK-GYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNL   79 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf             98999788878999999999978-39899998999765177798733368958997505685775431103332222233


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             688788521258056899877999999999987399--099995660217999898888886678978865200346688
Q 029656          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIM  182 (190)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~~~y~~~~~s  182 (190)
                      ++.........++.+.++.|+.++.++++++++.+.  ++++.||..+|+.....+.+|+     .|..+.+.|   +.+
T Consensus        80 a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~-----~~~~p~~~Y---~~s  151 (321)
T d1rpna_          80 AAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN-----TPFYPRSPY---GVA  151 (321)
T ss_dssp             CSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHH---HHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCC-----CCCCCCCHH---HHH
T ss_conf             333332110221577776402241989999998198744553333421586567788878-----876565734---799


Q ss_pred             HHHHHHC
Q ss_conf             8865314
Q 029656          183 KLIGELG  189 (190)
Q Consensus       183 K~~~E~~  189 (190)
                      |+.+|+.
T Consensus       152 K~~~E~~  158 (321)
T d1rpna_         152 KLYGHWI  158 (321)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
T ss_conf             9999999

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=6.3e-23  Score=136.24  Aligned_cols=151  Identities=22%  Similarity=0.210  Sum_probs=116.9

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCC-----CCCCCEEEE
Q ss_conf             027987999756555779999999960998599981788899234543415996599755566634-----578678998
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~  103 (190)
                      |-++|+|+||||+||||++|+++|+++ |+.|+++++.........     .....+..+|+.+..     ..++|.|||
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~-g~~V~~~d~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~d~Vih   85 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHE-GHYVIASDWKKNEHMTED-----MFCDEFHLVDLRVMENCLKVTEGVDHVFN   85 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCSSSCGG-----GTCSEEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCHHHH-----CCCCCEEEEECHHHHHHHHHHHCCCEEEE
T ss_conf             878987999788878999999999978-298999968985211342-----35672799351558989987614876731


Q ss_pred             CCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCCCCCCCCCCCCC--CCCCCCCCCCCHHHH
Q ss_conf             168878852-1258056899877999999999987399-099995660217999898888886--678978865200346
Q 029656          104 LACPASPIF-YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYW--GNVNPIGMFSFVLKD  179 (190)
Q Consensus       104 ~a~~~~~~~-~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~~~~~~~~E~~~--~~~~~~~~~~~y~~~  179 (190)
                      +|+...... ....+...+..|+.++.++++++++.++ ++|++||..+|+.....+..|..+  ....|..+.+.|   
T Consensus        86 ~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Y---  162 (363)
T d2c5aa1          86 LAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAF---  162 (363)
T ss_dssp             CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHH---
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH---
T ss_conf             02332222222222222222222124677776775175220244665423555445655455434667768988878---


Q ss_pred             HHHHHHHHH
Q ss_conf             688886531
Q 029656          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      +.+|+.+|+
T Consensus       163 g~sK~~~E~  171 (363)
T d2c5aa1         163 GLEKLATEE  171 (363)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999999999

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.89  E-value=1.1e-22  Score=134.88  Aligned_cols=152  Identities=32%  Similarity=0.382  Sum_probs=111.4

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCE--EEEECCCCCC-CHHHHHHHHCCCCEEEEECCCCCCCC-----CCCCEEEE
Q ss_conf             9879997565557799999999609985--9998178889-92345434159965997555666345-----78678998
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNE--VIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEPLL-----IEVDQIYH  103 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~--v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~d~vi~  103 (190)
                      +|+||||||+||||++|++.|++. |+.  ++++++.... ....+..+ ...++.++.+|+.+...     .+++.++|
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~-g~~v~v~~~d~~~~~~~~~~~~~~-~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~   79 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNN-HPDVHVTVLDKLTYAGNKANLEAI-LGDRVELVVGDIADAELVDKLAAKADAIVH   79 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHH-CTTCEEEEEECCCTTCCGGGTGGG-CSSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCCEEEEEEECCCCCCCHHHHHHH-HCCCEEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             399999188868999999999977-997499998488742348788886-258808997627898999987752003544


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECCCCC---CCCCC----CCCCCCCCCCCCCCCH
Q ss_conf             1688788521258056899877999999999987399099995660217999---89888----8886678978865200
Q 029656          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPL---VHPQD----ESYWGNVNPIGMFSFV  176 (190)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~v~~~~~---~~~~~----E~~~~~~~~~~~~~~y  176 (190)
                      +|+......+..++.+.+++|+.++.++++.+...+.++|++||..+|+...   ..+..    ...+...++..+.+.|
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y  159 (346)
T d1oc2a_          80 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPY  159 (346)
T ss_dssp             CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHH
T ss_pred             HHHCCCCCCHHHCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             43204456232186311554037677666441002321111122127525676545664345766665667888989989


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             346688886531
Q 029656          177 LKDGIMKLIGEL  188 (190)
Q Consensus       177 ~~~~~sK~~~E~  188 (190)
                         +.+|+.+|+
T Consensus       160 ---~~sK~~~E~  168 (346)
T d1oc2a_         160 ---SSTKAASDL  168 (346)
T ss_dssp             ---HHHHHHHHH
T ss_pred             ---HHHHHHHHH
T ss_conf             ---999999999

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9.3e-23  Score=135.36  Aligned_cols=149  Identities=28%  Similarity=0.414  Sum_probs=112.6

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC------HHHHHH--HHCCCCEEEEECCCCCCCCC-------
Q ss_conf             987999756555779999999960998599981788899------234543--41599659975556663457-------
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS------KDNLRK--WIGHPRFELIRHDVTEPLLI-------   96 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~------~~~~~~--~~~~~~~~~~~~D~~~~~~~-------   96 (190)
                      .+|||||||+||||++|+++|+++ |+.|+++++.....      ......  .....++.++++|+.|....       
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~-g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~   80 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEA-GYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY   80 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHT-TCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf             972999789738999999999978-6979999778742134432067888888733787179995644640122221233


Q ss_pred             CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             86789981688788521258056899877999999999987399-09999566021799989888888667897886520
Q 029656           97 EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSF  175 (190)
Q Consensus        97 ~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~~~  175 (190)
                      .+++++|+|+...+..+..++.+.++.|+.++.++++++++.++ +++++||..+|+........++.    ....+.++
T Consensus        81 ~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~----~~~~~~~~  156 (346)
T d1ek6a_          81 SFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH----PTGGCTNP  156 (346)
T ss_dssp             CEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTS----CCCCCSSH
T ss_pred             CCCCCCCCCCCCCCHHHHHCHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCEEEECCCCCCCCCCC----CCCCCCCH
T ss_conf             42332000313670766769899998553245223101221376521000000011012222222345----65566782


Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             0346688886531
Q 029656          176 VLKDGIMKLIGEL  188 (190)
Q Consensus       176 y~~~~~sK~~~E~  188 (190)
                      |   +.+|..+|+
T Consensus       157 Y---~~~k~~~e~  166 (346)
T d1ek6a_         157 Y---GKSKFFIEE  166 (346)
T ss_dssp             H---HHHHHHHHH
T ss_pred             H---HHHHHHHHH
T ss_conf             7---889998899

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=7.2e-23  Score=135.94  Aligned_cols=134  Identities=19%  Similarity=0.222  Sum_probs=103.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC-------CCCCCCEEEEC
Q ss_conf             98799975655577999999996099859998178889923454341599659975556663-------45786789981
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-------LLIEVDQIYHL  104 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-------~~~~~d~vi~~  104 (190)
                      .++|+||||+||||++|+++|+++ |+.+++++++...                   |+.+.       ...++|.++|+
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~-g~~vi~~~~~~~~-------------------~~~~~~~~~~~~~~~~~d~v~~~   61 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQR-GDVELVLRTRDEL-------------------NLLDSRAVHDFFASERIDQVYLA   61 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTC-TTEEEECCCTTTC-------------------CTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEECCCHHC-------------------CCCCHHHHHHHHHHCCCCEEEEC
T ss_conf             988999858728999999999978-4989996570242-------------------53589999999864699899985


Q ss_pred             CCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             6887885-21258056899877999999999987399-099995660217999898888886678978865200346688
Q 029656          105 ACPASPI-FYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIM  182 (190)
Q Consensus       105 a~~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~~~y~~~~~s  182 (190)
                      |+..... .......+.+..|+.++.++++++.+.++ |+||+||.++|+.....+++|+.+....+..+.+.|   +.+
T Consensus        62 a~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y---~~s  138 (315)
T d1e6ua_          62 AAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPY---AIA  138 (315)
T ss_dssp             CCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHH---HHH
T ss_pred             CHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCHH---HHH
T ss_conf             12126641000328999999999999999999986998899978756718998899567766668889999879---999


Q ss_pred             HHHHHH
Q ss_conf             886531
Q 029656          183 KLIGEL  188 (190)
Q Consensus       183 K~~~E~  188 (190)
                      |+++|+
T Consensus       139 K~~~E~  144 (315)
T d1e6ua_         139 KIAGIK  144 (315)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
T ss_conf             999999

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.88  E-value=7.9e-22  Score=130.47  Aligned_cols=150  Identities=20%  Similarity=0.228  Sum_probs=112.7

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC-------CCCEEE
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663457-------867899
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIY  102 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-------~~d~vi  102 (190)
                      .++|+||||||+||||++++++|++. |++|++++|+.......+........+.++.+|+.|....       .+++++
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~-g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~   84 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTM-GATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVF   84 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             HCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCHHHHHH
T ss_conf             18898999788877999999999977-99899997899861777766401468769984056857600234302024444


Q ss_pred             ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-E-EEEEECCEECCCCC-CCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             81688788521258056899877999999999987399-0-99995660217999-898888886678978865200346
Q 029656          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-R-ILLTSTSEVYGDPL-VHPQDESYWGNVNPIGMFSFVLKD  179 (190)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~-ii~~SS~~v~~~~~-~~~~~E~~~~~~~~~~~~~~y~~~  179 (190)
                      |+|+......+...+...+.+|+.++.++++++++.+. + +++.|+..++.... ..+..|+     .+..+.+.|   
T Consensus        85 ~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-----~~~~p~~~y---  156 (356)
T d1rkxa_          85 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN-----EAMGGYDPY---  156 (356)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTT-----SCBCCSSHH---
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCC---
T ss_conf             442156565324677535332233403566664304554322222221223456543332223-----456898843---


Q ss_pred             HHHHHHHHH
Q ss_conf             688886531
Q 029656          180 GIMKLIGEL  188 (190)
Q Consensus       180 ~~sK~~~E~  188 (190)
                      +.+|..+|.
T Consensus       157 ~~~k~~~e~  165 (356)
T d1rkxa_         157 SNSKGCAEL  165 (356)
T ss_dssp             HHHHHHHHH
T ss_pred             CCCCCCCHH
T ss_conf             243233204

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.87  E-value=1.2e-21  Score=129.53  Aligned_cols=152  Identities=27%  Similarity=0.369  Sum_probs=108.4

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHHHHHCCCCEEEEECCCCCCCCC-------CCCEEEECC
Q ss_conf             799975655577999999996099859998178889-923454341599659975556663457-------867899816
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG-SKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYHLA  105 (190)
Q Consensus        34 ~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~~-------~~d~vi~~a  105 (190)
                      |||||||+||||++|+++|+++ |++|+++++.... ....+..+....++.++.+|+.+....       ++|+|||+|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~-g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~a   80 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQ-GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA   80 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             7999898728999999999978-398999979886651667887511698189986168989999999735774699603


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCE-ECCCCCCCCCCCCC-----------CCCCCCCCC
Q ss_conf             88788521258056899877999999999987399-099995660-21799989888888-----------667897886
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE-VYGDPLVHPQDESY-----------WGNVNPIGM  172 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~-v~~~~~~~~~~E~~-----------~~~~~~~~~  172 (190)
                      +.........++...+++|+.+|.++++++.+.+. +++++||.+ .++.....+..+..           +....+..+
T Consensus        81 a~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (338)
T d1orra_          81 GQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDF  160 (338)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             43222212248688888799999999876531455554355561111023335665445566554233567665774333


Q ss_pred             CCCHHHHHHHHHHHHHC
Q ss_conf             52003466888865314
Q 029656          173 FSFVLKDGIMKLIGELG  189 (190)
Q Consensus       173 ~~~y~~~~~sK~~~E~~  189 (190)
                      .+.|   +.+|...|..
T Consensus       161 ~~~y---~~~k~~~e~~  174 (338)
T d1orra_         161 HSPY---GCSKGAADQY  174 (338)
T ss_dssp             CHHH---HHHHHHHHHH
T ss_pred             CCCC---CCCCCHHHHH
T ss_conf             1344---4332103443

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.87  E-value=1.1e-21  Score=129.74  Aligned_cols=156  Identities=28%  Similarity=0.375  Sum_probs=113.0

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC--------HHHH-HHH---------HCCCCEEEEECCCCC
Q ss_conf             7987999756555779999999960998599981788899--------2345-434---------159965997555666
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS--------KDNL-RKW---------IGHPRFELIRHDVTE   92 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~--------~~~~-~~~---------~~~~~~~~~~~D~~~   92 (190)
                      ++|+||||||+||||++|+++|+++.+++|+++|+.....        .... ..+         .....+.++.+|+.|
T Consensus         1 ~~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d   80 (383)
T d1gy8a_           1 SHMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (383)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCC
T ss_conf             96979995787689999999999828998999826876555300133566677776541133332235541799784568


Q ss_pred             CCC--------CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCCCCCCCCCC--
Q ss_conf             345--------786789981688788521258056899877999999999987399-099995660217999898888--
Q 029656           93 PLL--------IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPLVHPQDE--  161 (190)
Q Consensus        93 ~~~--------~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~~~~~~~~E--  161 (190)
                      ...        ..+|+|||+|+..........+...++.|+.++.++++++++.+. +++++||..+|+........+  
T Consensus        81 ~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  160 (383)
T d1gy8a_          81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNA  160 (383)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CC
T ss_pred             HHHHHHHHHCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             78866666224012043232443222223222233134554442232001110477533333332222334433222222


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             8866789788652003466888865314
Q 029656          162 SYWGNVNPIGMFSFVLKDGIMKLIGELG  189 (190)
Q Consensus       162 ~~~~~~~~~~~~~~y~~~~~sK~~~E~~  189 (190)
                      +...+..+..+.+.|   +.+|+.+|+.
T Consensus       161 ~~~~e~~~~~p~~~Y---~~sK~~~e~~  185 (383)
T d1gy8a_         161 EPIDINAKKSPESPY---GESKLIAERM  185 (383)
T ss_dssp             CCBCTTSCCBCSSHH---HHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHH---HHHHHHHHHH
T ss_conf             221233578999888---8667679999

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=8.2e-22  Score=130.39  Aligned_cols=153  Identities=29%  Similarity=0.415  Sum_probs=106.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCC-------------CCCC---HHHHHHH--HCCCCEEEEECCCCCC
Q ss_conf             98799975655577999999996099859998178-------------8899---2345434--1599659975556663
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY-------------FTGS---KDNLRKW--IGHPRFELIRHDVTEP   93 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~-------------~~~~---~~~~~~~--~~~~~~~~~~~D~~~~   93 (190)
                      ||+||||||+||||++|+++|++. |+.|+++|..             ....   ...+..+  ....++.++.+|+.|.
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~-g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~   79 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKK-NYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF   79 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCH
T ss_conf             998999899848999999999978-5989999467754221101211134332157788777762279707998307899


Q ss_pred             CCC-------CCCEEEECCCCCCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECCEECCCCCCCCCCC
Q ss_conf             457-------86789981688788521258---056899877999999999987399--099995660217999898888
Q 029656           94 LLI-------EVDQIYHLACPASPIFYKYN---PVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSEVYGDPLVHPQDE  161 (190)
Q Consensus        94 ~~~-------~~d~vi~~a~~~~~~~~~~~---~~~~~~~n~~~~~~l~~~~~~~~~--~ii~~SS~~v~~~~~~~~~~E  161 (190)
                      +..       ++|+|||+|+......+..+   +..++..|+.++.++++.+++.+.  ++++.||..+|+.... +..|
T Consensus        80 ~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~-~~~~  158 (393)
T d1i24a_          80 EFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI-DIEE  158 (393)
T ss_dssp             HHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSS-CBCS
T ss_pred             HHHHHHHHHHCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCC-CCCC
T ss_conf             999999975110120012342101232222222222333223354078999998431242011012111223356-6432


Q ss_pred             CCC-------C--CCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             886-------6--789788652003466888865314
Q 029656          162 SYW-------G--NVNPIGMFSFVLKDGIMKLIGELG  189 (190)
Q Consensus       162 ~~~-------~--~~~~~~~~~~y~~~~~sK~~~E~~  189 (190)
                      ..+       .  ...+..+.+.|   +.+|+.+|+.
T Consensus       159 ~~~~~~~~~~~~~~~~~~~p~~~Y---~~sK~~aE~~  192 (393)
T d1i24a_         159 GYITITHNGRTDTLPYPKQASSFY---HLSKVHDSHN  192 (393)
T ss_dssp             SEEEEEETTEEEEEECCCCCCSHH---HHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHH---HHHHHHHCCC
T ss_conf             333222223555554213545577---7775310012

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=5.8e-21  Score=125.92  Aligned_cols=146  Identities=22%  Similarity=0.232  Sum_probs=111.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-HHHHHHH------HCCCCEEEEECCCCCCCC-------CCC
Q ss_conf             87999756555779999999960998599981788899-2345434------159965997555666345-------786
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDNLRKW------IGHPRFELIRHDVTEPLL-------IEV   98 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~~~~~------~~~~~~~~~~~D~~~~~~-------~~~   98 (190)
                      +++|||||+||||++|++.|+++ |+.|++++|..... ...+..+      .....+.+..+|+.+...       .++
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~-g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~   80 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGK-GYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP   80 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCC
T ss_conf             98999688648999999999978-49899997888555514366654223340456459997636688999999864134


Q ss_pred             CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-----C-EEEEEECCEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             78998168878852125805689987799999999998739-----9-09999566021799989888888667897886
Q 029656           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-----A-RILLTSTSEVYGDPLVHPQDESYWGNVNPIGM  172 (190)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-----~-~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~  172 (190)
                      |+|||+|+........+++...+..|+.++.+++++++...     . ++++.||..+++.. ..+++|+     .|..+
T Consensus        81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~-~~~~~E~-----~~~~p  154 (339)
T d1n7ha_          81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGST-PPPQSET-----TPFHP  154 (339)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTS-CSSBCTT-----SCCCC
T ss_pred             CHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCEECCCC-CCCCCCC-----CCCCC
T ss_conf             11220122133333000851111322356511566665111245431256622641203467-9998888-----98898


Q ss_pred             CCCHHHHHHHHHHHHH
Q ss_conf             5200346688886531
Q 029656          173 FSFVLKDGIMKLIGEL  188 (190)
Q Consensus       173 ~~~y~~~~~sK~~~E~  188 (190)
                      .+.|   +.+|+.+|+
T Consensus       155 ~~~Y---~~sK~~~E~  167 (339)
T d1n7ha_         155 RSPY---AASKCAAHW  167 (339)
T ss_dssp             CSHH---HHHHHHHHH
T ss_pred             CCHH---HHHHHHHHH
T ss_conf             6634---578999999

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=99.85  E-value=3.5e-21  Score=127.10  Aligned_cols=131  Identities=23%  Similarity=0.208  Sum_probs=102.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCC-------CCCCEEEECC
Q ss_conf             879997565557799999999609985999817888992345434159965997555666345-------7867899816
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-------IEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~d~vi~~a  105 (190)
                      |+||||||+||||++|++.|.+. |+.+.+ +++...                +.+|+.+...       .++|+|||+|
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~-g~~v~~-~~~~~~----------------~~~Dl~~~~~~~~~i~~~~~D~Vih~A   62 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPV-GNLIAL-DVHSKE----------------FCGDFSNPKGVAETVRKLRPDVIVNAA   62 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTT-SEEEEE-CTTCSS----------------SCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEE-ECCCCC----------------CCCCCCCHHHHHHHHHHCCCCEEEEEC
T ss_conf             97999899988999999999868-999999-789844----------------427578999999999974998999724


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             88788521258056899877999999999987399099995660217999898888886678978865200346688886
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLI  185 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~~~y~~~~~sK~~  185 (190)
                      |...+..+...+...+..|+.++.++++++++.+.+++++||+.+|......|..|+     .+..+.+.|   +.+|..
T Consensus        63 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ss~~~~~~~~~~~~~E~-----~~~~p~~~y---~~~k~~  134 (298)
T d1n2sa_          63 AHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQET-----DATSPLNVY---GKTKLA  134 (298)
T ss_dssp             CCCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTT-----SCCCCSSHH---HHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCHH---HHHHHH
T ss_conf             434322112576422121110100000000001312122333210258888887544-----345778667---654566


Q ss_pred             HHHC
Q ss_conf             5314
Q 029656          186 GELG  189 (190)
Q Consensus       186 ~E~~  189 (190)
                      +|..
T Consensus       135 ~e~~  138 (298)
T d1n2sa_         135 GEKA  138 (298)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             6666

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.83  E-value=5.7e-20  Score=120.73  Aligned_cols=151  Identities=25%  Similarity=0.229  Sum_probs=105.7

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH---HC-CCCEEEEECCCCCCC-----CCCCCE
Q ss_conf             279879997565557799999999609985999817888992345434---15-996599755566634-----578678
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IG-HPRFELIRHDVTEPL-----LIEVDQ  100 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~---~~-~~~~~~~~~D~~~~~-----~~~~d~  100 (190)
                      ..|++|+||||+||||++++++|+++ |++|+++.|+..... .+...   .. ......+.+|+.+..     ..++|.
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~-G~~V~~~vR~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEH-GYKVRGTARSASKLA-NLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHH-HHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCHHHH-HHHHHHHCCCCCCCCEEEECCCCCHHHHHHHCCCCHH
T ss_conf             99599999799889999999999978-598999968821689-9987431125564517896502340554221132100


Q ss_pred             EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-C-EEEEEECCEECCCCC----CCCCCCCCCC---------
Q ss_conf             998168878852125805689987799999999998739-9-099995660217999----8988888866---------
Q 029656          101 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVG-A-RILLTSTSEVYGDPL----VHPQDESYWG---------  165 (190)
Q Consensus       101 vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~-~ii~~SS~~v~~~~~----~~~~~E~~~~---------  165 (190)
                      ++|+++....   ...+...+..|+.++.++++.|.+.+ + ++|++||..++..+.    ....+|+.|.         
T Consensus        87 v~~~a~~~~~---~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~  163 (342)
T d1y1pa1          87 VAHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKT  163 (342)
T ss_dssp             EEECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHH
T ss_pred             HHHHCCCCCC---CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             1100123565---4333334464425679998762000011345553222232157888877543334346532222223


Q ss_pred             --CCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             --78978865200346688886531
Q 029656          166 --NVNPIGMFSFVLKDGIMKLIGEL  188 (190)
Q Consensus       166 --~~~~~~~~~~y~~~~~sK~~~E~  188 (190)
                        +.++..+...|   +.+|..+|+
T Consensus       164 ~~e~~~~~p~~~Y---~~sK~~~E~  185 (342)
T d1y1pa1         164 LPESDPQKSLWVY---AASKTEAEL  185 (342)
T ss_dssp             SCTTSTTHHHHHH---HHHHHHHHH
T ss_pred             CCCCCCCCCCCCC---CCHHHHHHH
T ss_conf             2235777776734---302376999

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8e-18  Score=109.43  Aligned_cols=121  Identities=15%  Similarity=0.093  Sum_probs=92.6

Q ss_pred             HCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCC-----CCCC
Q ss_conf             000002798799975655577999999996099-8599981788899234543415996599755566634-----5786
Q 029656           25 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEV   98 (190)
Q Consensus        25 ~~~~~~~~~~vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~   98 (190)
                      +.+|.+++++|+||||+|+||++++++|++++. +.|+++.|+........     ...+....+|+.+..     ..++
T Consensus         7 ~~~~~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~-----~~~i~~~~~D~~~~~~~~~~~~~~   81 (232)
T d2bkaa1           7 REDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-----YKNVNQEVVDFEKLDDYASAFQGH   81 (232)
T ss_dssp             HHHHHHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-----GGGCEEEECCGGGGGGGGGGGSSC
T ss_pred             HHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHCCCC-----CCEEEEEEECCCCCCCCCCCCCCC
T ss_conf             997377999899988983899999999996799877999866812201112-----321455530233111111111223


Q ss_pred             CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCC
Q ss_conf             789981688788521258056899877999999999987399-0999956602179
Q 029656           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD  153 (190)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~  153 (190)
                      |++||+++...   .......+..+|+.++.++++.|.+.++ +||++||..++..
T Consensus        82 d~vi~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~~  134 (232)
T d2bkaa1          82 DVGFCCLGTTR---GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKS  134 (232)
T ss_dssp             SEEEECCCCCH---HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT
T ss_pred             CCCCCCCCCCC---CCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             22223334323---332002344430222010010122367665656775313357

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.75  E-value=4.7e-18  Score=110.65  Aligned_cols=128  Identities=29%  Similarity=0.294  Sum_probs=102.4

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCC-------CCCCCEEEEC
Q ss_conf             987999756555779999999960998599981788899234543415996599755566634-------5786789981
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-------LIEVDQIYHL  104 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-------~~~~d~vi~~  104 (190)
                      .|+|+||||+||||++|+++|.++ |++|+.++|+.-                    |+.+..       ..++|+|||+
T Consensus         1 ~MKIlItGasGfiG~~l~~~L~~~-g~~Vi~~~r~~~--------------------D~~d~~~~~~~l~~~~~d~vih~   59 (281)
T d1vl0a_           1 HMKILITGANGQLGREIQKQLKGK-NVEVIPTDVQDL--------------------DITNVLAVNKFFNEKKPNVVINC   59 (281)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHTTS-SEEEEEECTTTC--------------------CTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECHHC--------------------CCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             987999799988999999999868-898999204125--------------------67899999999987399799740


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             68878852125805689987799999999998739909999566021799989888888667897886520034668888
Q 029656          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKL  184 (190)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~~~y~~~~~sK~  184 (190)
                      |+......+...++.....|......+.+.+......++++||..+|+.....++.|.     ++..+...|   +.+|.
T Consensus        60 a~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ss~~v~~~~~~~~~~e~-----~~~~~~~~~---~~~k~  131 (281)
T d1vl0a_          60 AAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEF-----DEVNPQSAY---GKTKL  131 (281)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTT-----SCCCCCSHH---HHHHH
T ss_pred             CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-----CCCCCHHHH---HHHHH
T ss_conf             2223321123462000032312322221100001322223444225411444455325-----200010234---43224


Q ss_pred             HHHH
Q ss_conf             6531
Q 029656          185 IGEL  188 (190)
Q Consensus       185 ~~E~  188 (190)
                      .+|+
T Consensus       132 ~~e~  135 (281)
T d1vl0a_         132 EGEN  135 (281)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             8999

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.8e-17  Score=105.36  Aligned_cols=112  Identities=17%  Similarity=0.230  Sum_probs=87.7

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCC-----CCCCCEEEECC
Q ss_conf             7987999756555779999999960998599981788899234543415996599755566634-----57867899816
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~~a  105 (190)
                      .+++|+||||+|+||++++++|+++ |++|.++.|+..+....     ....+.++.+|+.+.+     +.++|+|||++
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~-g~~V~~~~R~~~~~~~~-----~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~   75 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDSSRLPSE-----GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL   75 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCGGGSCSS-----SCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHCCCC-----CCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEE
T ss_conf             9888999999878999999999978-69899998371645542-----12353201122211456999865987899983


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCCCC
Q ss_conf             88788521258056899877999999999987399-099995660217999
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGDPL  155 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~~~  155 (190)
                      |.....    .+   ...+..++.++++++++.++ |+|++||.+++....
T Consensus        76 g~~~~~----~~---~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~  119 (205)
T d1hdoa_          76 GTRNDL----SP---TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPT  119 (205)
T ss_dssp             CCTTCC----SC---CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTT
T ss_pred             CCCCCH----HH---HHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCC
T ss_conf             158833----32---135578788889889865988179993115047874

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=99.70  E-value=6.8e-17  Score=104.54  Aligned_cols=125  Identities=16%  Similarity=0.105  Sum_probs=95.7

Q ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC-CCCEEEEECCCCCCCC---------
Q ss_conf             000027987999756555779999999960998599981788899234543415-9965997555666345---------
Q 029656           26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL---------   95 (190)
Q Consensus        26 ~~~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~---------   95 (190)
                      .+|.++||+++||||+++||+++++.|++. |++|++.+|+.+...+...++.. ...+..+.+|+.+.+.         
T Consensus         2 g~f~L~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~   80 (259)
T d2ae2a_           2 GRWNLEGCTALVTGGSRGIGYGIVEELASL-GASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVA   80 (259)
T ss_dssp             CTTCCTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
T ss_conf             986899998999288878999999999987-9999999799899999999987358975499920799999999999999


Q ss_pred             ---C-CCCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHH----HCCC-EEEEEECCEEC
Q ss_conf             ---7-8678998168878852----125805689987799999999998----7399-09999566021
Q 029656           96 ---I-EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        96 ---~-~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~ii~~SS~~v~  151 (190)
                         . .+|++||+||......    ..++++..+++|+.+++++.+.+.    +.+. ++|++||....
T Consensus        81 ~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~  149 (259)
T d2ae2a_          81 NHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGA  149 (259)
T ss_dssp             HHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGT
T ss_pred             HHHCCCCEEEEECCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEEECCCHHHHHCCCCCCCCCCCCCC
T ss_conf             983998408997782304576344999999999841531168987402200222122333343322334

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.70  E-value=8.7e-17  Score=103.99  Aligned_cols=122  Identities=20%  Similarity=0.142  Sum_probs=93.2

Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC--CCCEEEEECCCCCCCCC---------
Q ss_conf             0027987999756555779999999960998599981788899234543415--99659975556663457---------
Q 029656           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLLI---------   96 (190)
Q Consensus        28 ~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~---------   96 (190)
                      |.+++|+++||||+++||+++++.|++. |++|.+.+|+.+...+...++..  ..++..+.+|+.+++..         
T Consensus         1 f~l~gK~~lITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           1 FDLRGRVALVTGGSRGLGFGIAQGLAEA-GCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             9999988999288879999999999987-998999979889999999999997099479998368999999999999999


Q ss_pred             ---CCCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHH----CCC-EEEEEECCEE
Q ss_conf             ---8678998168878852----1258056899877999999999987----399-0999956602
Q 029656           97 ---EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEV  150 (190)
Q Consensus        97 ---~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~ii~~SS~~v  150 (190)
                         ++|++||+||......    ..++++..+++|+.+++++.+.+.+    .+. ++|+++|...
T Consensus        80 ~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~  145 (251)
T d1vl8a_          80 KFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTV  145 (251)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGG
T ss_pred             HCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf             739998999899989999825599999877777540121332134441012212334444331010

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=99.70  E-value=9.7e-17  Score=103.74  Aligned_cols=120  Identities=18%  Similarity=0.153  Sum_probs=93.3

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC------------C
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663457------------8
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI------------E   97 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~------------~   97 (190)
                      +++|+++||||+++||+++++.|+++ |++|++.+|+.+.......++  ..++.++.+|+.+++..            +
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAA-GARVVLADVLDEEGAATAREL--GDAARYQHLDVTIEEDWQRVVAYAREEFGS   79 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHH--CCCEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf             99988999486879999999999987-998999979878999999981--886279983259999999999999998299


Q ss_pred             CCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHH----HCCC-EEEEEECCEECC
Q ss_conf             678998168878852----125805689987799999999998----7399-099995660217
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~ii~~SS~~v~~  152 (190)
                      +|++||+||......    ..++++..+++|+.+++++.+.+.    +.+. ++|++||...+.
T Consensus        80 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~  143 (254)
T d1hdca_          80 VDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM  143 (254)
T ss_dssp             CCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred             CCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHCC
T ss_conf             6389954765443332100012210112477667999999999987655997323433220113

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=99.69  E-value=6.4e-17  Score=104.67  Aligned_cols=121  Identities=18%  Similarity=0.139  Sum_probs=94.0

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC------------C
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663457------------8
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI------------E   97 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~------------~   97 (190)
                      +++|+++||||+++||+++++.|+++ |++|.+.+|+.+.......++....++.++.+|+.+++..            +
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   82 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEE-GAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGP   82 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf             79988999488878999999999987-99999997987899999998578995799984689999999999999997099


Q ss_pred             CCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHH----CC--CEEEEEECCEEC
Q ss_conf             678998168878852----1258056899877999999999987----39--909999566021
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~ii~~SS~~v~  151 (190)
                      +|++||+||......    ..++++..+++|+.+++++.+.+.+    .+  .++|++||...+
T Consensus        83 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~  146 (251)
T d1zk4a1          83 VSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGF  146 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGT
T ss_pred             CEEEEECCCCCCCCCHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCEE
T ss_conf             3399966643422200000210011100001044305689998998853899834764223020

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=1e-16  Score=103.56  Aligned_cols=119  Identities=18%  Similarity=0.135  Sum_probs=92.1

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC------------C
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663457------------8
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI------------E   97 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~------------~   97 (190)
                      +++|+++||||+++||+++++.|++. |++|++.+|+.+.......++.  ..+.++.+|+.+++..            .
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   80 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAE-GAKVVFGDILDEEGKAMAAELA--DAARYVHLDVTQPAQWKAAVDTAVTAFGG   80 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTG--GGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHH--CCCEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf             69988999488888999999999987-9999999798899999999850--76369995369999999999999998099


Q ss_pred             CCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHH----HHCCC-EEEEEECCEEC
Q ss_conf             678998168878852----12580568998779999999999----87399-09999566021
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~ii~~SS~~v~  151 (190)
                      +|++||+||......    ..+++++.+++|+.+++++.+.+    .+.+. ++|++||...+
T Consensus        81 idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~  143 (244)
T d1nffa_          81 LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGL  143 (244)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             CEEEEECCCCCCCCCHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf             709997872268885321899997677501341026788887767875675348850554433

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=99.69  E-value=1.4e-16  Score=102.92  Aligned_cols=122  Identities=16%  Similarity=0.170  Sum_probs=93.8

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC------------C
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663457------------8
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI------------E   97 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~------------~   97 (190)
                      +++|+++||||+++||+++++.|+++ |++|++++|+.+..++...++.....+.++.+|+.+++..            +
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRY-GAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK   82 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf             89988999389869999999999987-99899997988999999998358995699986689999999999999997597


Q ss_pred             CCEEEECCCCCCCC--C----CCCCCHHHHHHHHHHHHHHHHHHH----HCCC-EEEEEECCEECC
Q ss_conf             67899816887885--2----125805689987799999999998----7399-099995660217
Q 029656           98 VDQIYHLACPASPI--F----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~a~~~~~~--~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~ii~~SS~~v~~  152 (190)
                      +|++||+||.....  .    ..+.++..+++|+.+++++.+.+.    +.+. ++|++||...+.
T Consensus        83 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~  148 (268)
T d2bgka1          83 LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFT  148 (268)
T ss_dssp             CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTC
T ss_pred             CCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCHHHHCCCCCCCCCCCCCCCC
T ss_conf             226325322356887411347588899999876112243334423467655898865445531133

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=99.69  E-value=1.3e-16  Score=103.04  Aligned_cols=122  Identities=13%  Similarity=0.093  Sum_probs=91.5

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH-HHH--CCCCEEEEECCCCCCCCC---------
Q ss_conf             02798799975655577999999996099859998178889923454-341--599659975556663457---------
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR-KWI--GHPRFELIRHDVTEPLLI---------   96 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~-~~~--~~~~~~~~~~D~~~~~~~---------   96 (190)
                      ++++|+++||||+++||+++++.|+++ |++|.+.+|+.....+.+. ++.  ...++.++.+|+.+.+..         
T Consensus         1 ~L~gK~alITGas~GIG~aiA~~la~~-Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (260)
T d1x1ta1           1 MLKGKVAVVTGSTSGIGLGIATALAAQ-GADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVR   79 (260)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             989599999288878999999999987-9989999698678899999998874198189997878999999999999999


Q ss_pred             ---CCCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHH----HHCCC-EEEEEECCEEC
Q ss_conf             ---8678998168878852----12580568998779999999999----87399-09999566021
Q 029656           97 ---EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ---~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~ii~~SS~~v~  151 (190)
                         ++|++||+||......    ..++++..+++|+.+++++.+.+    ++.+. ++|++||...+
T Consensus        80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~  146 (260)
T d1x1ta1          80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGL  146 (260)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCE
T ss_conf             8299768995213456773544138765445520343432332012455765498247520354100

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=9.7e-16  Score=98.47  Aligned_cols=142  Identities=23%  Similarity=0.316  Sum_probs=97.1

Q ss_pred             EEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHHCCCCEEEEE-CCCCC-----CCCCCCCEEEECCCC
Q ss_conf             99975655577999999996099-859998178889923454341599659975-55666-----345786789981688
Q 029656           35 ILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIR-HDVTE-----PLLIEVDQIYHLACP  107 (190)
Q Consensus        35 vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~D~~~-----~~~~~~d~vi~~a~~  107 (190)
                      ||||||+||||++|+++|+++ | +.|+++++......  ...+.......... .|+.+     .....++.++|+|+.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~-g~~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~   78 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDK-GITDILVVDNLKDGTK--FVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGAC   78 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTT-TCCCEEEEECCSSGGG--GHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSC
T ss_pred             EEEECCCCHHHHHHHHHHHHC-CCCEEEEEECCCCCCH--HHCCCCCCHHHHCCCHHHHHHHHHHHCCCCHHHHHHHCCC
T ss_conf             999548539999999999967-9975999978987521--0100003144430405788887643100000012210223


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             78852125805689987799999999998739909999566021799989888888667897886520034668888653
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQDESYWGNVNPIGMFSFVLKDGIMKLIGE  187 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~v~~~~~~~~~~E~~~~~~~~~~~~~~y~~~~~sK~~~E  187 (190)
                      ....  ..+.+.....++.++.+++++++..++++++.||..++..+......++     .+..+.+.|   +.+|..+|
T Consensus        79 ~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~i~~v~~ss~~~~~~~~~~~~~~~-----~~~~~~~~Y---~~~K~~~e  148 (307)
T d1eq2a_          79 SSTT--EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVY---GYSKFLFD  148 (307)
T ss_dssp             CCTT--CCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSG-----GGCCCSSHH---HHHHHHHH
T ss_pred             CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCC---CCCCCHHH
T ss_conf             3222--2222222222222222222222223332332233322233322222222-----333322222---23330134


Q ss_pred             HC
Q ss_conf             14
Q 029656          188 LG  189 (190)
Q Consensus       188 ~~  189 (190)
                      ..
T Consensus       149 ~~  150 (307)
T d1eq2a_         149 EY  150 (307)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             43

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=99.68  E-value=2.5e-16  Score=101.55  Aligned_cols=121  Identities=16%  Similarity=0.132  Sum_probs=91.9

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH---HCCCCEEEEECCCCCCCCC----------
Q ss_conf             279879997565557799999999609985999817888992345434---1599659975556663457----------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPLLI----------   96 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~----------   96 (190)
                      +++|+++||||+++||+++++.|+++ |++|.+.+|+.+.......++   ....++..+.+|+.+++..          
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   80 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAE-GAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER   80 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             99998999288888999999999987-99899997878889999999996389972999965579999999999999998


Q ss_pred             --CCCEEEECCCCCCCC--C---CCCCCHHHHHHHHHHHHHHHHHHH----HCC-CEEEEEECCEEC
Q ss_conf             --867899816887885--2---125805689987799999999998----739-909999566021
Q 029656           97 --EVDQIYHLACPASPI--F---YKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVY  151 (190)
Q Consensus        97 --~~d~vi~~a~~~~~~--~---~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~ii~~SS~~v~  151 (190)
                        ++|++||+||...+.  .   ..++++..+++|+.+++++.+.+.    +.+ .++|++||...+
T Consensus        81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~  147 (258)
T d1iy8a_          81 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGI  147 (258)
T ss_dssp             HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGT
T ss_pred             HCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHC
T ss_conf             2999899989844244782554103677877644211002212466766665058877654337452

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.8e-16  Score=102.37  Aligned_cols=124  Identities=16%  Similarity=0.101  Sum_probs=94.3

Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC-CCCEEEEECCCCCCCC-----------
Q ss_conf             0027987999756555779999999960998599981788899234543415-9965997555666345-----------
Q 029656           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        28 ~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~-----------   95 (190)
                      +.++||+++||||+++||+++++.|+++ |++|.+.+|+.+...+...++.. ..++..+.+|+.+++.           
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~   85 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATA-GASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             8889998999389759999999999987-998999979989999999999973992899984589999999999999997


Q ss_pred             -CCCCEEEECCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHH----CCC-EEEEEECCEECC
Q ss_conf             -78678998168878852---1258056899877999999999987----399-099995660217
Q 029656           96 -IEVDQIYHLACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 -~~~d~vi~~a~~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~ii~~SS~~v~~  152 (190)
                       .++|++||+||......   ..++++..+++|+.+++++.+.+.+    .+. ++|++||...+.
T Consensus        86 ~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~  151 (255)
T d1fmca_          86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN  151 (255)
T ss_dssp             HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC
T ss_pred             CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHC
T ss_conf             399887443774799986649999999999998777665677877651134566443345521000

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=9.8e-17  Score=103.70  Aligned_cols=120  Identities=18%  Similarity=0.093  Sum_probs=92.2

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCC------------CC
Q ss_conf             279879997565557799999999609985999817888992345434159965997555666345------------78
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      +++|+++||||+++||+++++.|+++ |++|++.+|+.+..++...++  ..+...+.+|+.+.+.            .+
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~-G~~Vv~~~r~~~~l~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   78 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAAR-GAKVIGTATSENGAQAISDYL--GANGKGLMLNVTDPASIESVLEKIRAEFGE   78 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHH--CCCCCEEEEEECCHHHHHHHHHHHHCCCCC
T ss_conf             99999999488888999999999986-999999969888999999985--777718999835789844433000011688


Q ss_pred             CCEEEECCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHH----HCCC-EEEEEECCEECC
Q ss_conf             6789981688788521----25805689987799999999998----7399-099995660217
Q 029656           98 VDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~ii~~SS~~v~~  152 (190)
                      +|++||+||.......    .++++..+++|+.+++++.+.+.    +.+. ++|++||...+.
T Consensus        79 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~  142 (243)
T d1q7ba_          79 VDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTM  142 (243)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH
T ss_pred             CCEEHHHHHHCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHCCCCEEEEECCHHHCC
T ss_conf             5610121210233222332210014441055624465699999999984998863663343357

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.67  E-value=2.5e-16  Score=101.59  Aligned_cols=119  Identities=21%  Similarity=0.211  Sum_probs=92.4

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC------------C
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663457------------8
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI------------E   97 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~------------~   97 (190)
                      +++|+++||||+++||+++++.|+++ |++|.+.+|+.+...+...++  ..++..+.+|+++++..            +
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~--~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   79 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVRE-GARVAIADINLEAARATAAEI--GPAACAIALDVTDQASIDRCVAELLDRWGS   79 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHT-TEEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHH--CCCEEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf             89999999388879999999999987-999999979999999999985--895489995379999999999999997099


Q ss_pred             CCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHH----CC--CEEEEEECCEEC
Q ss_conf             678998168878852----1258056899877999999999987----39--909999566021
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VG--ARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~ii~~SS~~v~  151 (190)
                      +|++||+||......    ..++++..+++|+.+++++.+.+.+    .+  .++|++||...+
T Consensus        80 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~  143 (256)
T d1k2wa_          80 IDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGR  143 (256)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT
T ss_pred             CCEEEEECCCCCCCCCCCCCHHHHHHHHCEEEECCCCCHHHCCCHHHHHCCCCCCCCCCCHHHC
T ss_conf             6389842222466656359999998653002321200022115256775368754433003331

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.4e-16  Score=101.62  Aligned_cols=121  Identities=17%  Similarity=0.066  Sum_probs=92.2

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC---CCCEEEEECCCCCCCCC----------
Q ss_conf             27987999756555779999999960998599981788899234543415---99659975556663457----------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG---HPRFELIRHDVTEPLLI----------   96 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~----------   96 (190)
                      +++|+++||||+++||+++++.|+++ |++|++.+|+.....+...++..   ..++.++++|+.+++..          
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~-G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQ-GLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             79988999489888999999999987-99999997988999999999985699952999974589999999999999984


Q ss_pred             --CCCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHH----HCC---CEEEEEECCEEC
Q ss_conf             --8678998168878852----125805689987799999999998----739---909999566021
Q 029656           97 --EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG---ARILLTSTSEVY  151 (190)
Q Consensus        97 --~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~---~~ii~~SS~~v~  151 (190)
                        ++|++||+||...+..    ..+.++..+++|+.+.+++.+.+.    +.+   .++|++||...+
T Consensus        87 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~  154 (257)
T d1xg5a_          87 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGH  154 (257)
T ss_dssp             HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGT
T ss_pred             CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHC
T ss_conf             68878787635346777600165778875121110399999999999988741589856888446864

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.67  E-value=1.2e-16  Score=103.28  Aligned_cols=124  Identities=16%  Similarity=0.065  Sum_probs=95.0

Q ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC-CCCEEEEECCCCCCCC----------
Q ss_conf             00027987999756555779999999960998599981788899234543415-9965997555666345----------
Q 029656           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        27 ~~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~----------   95 (190)
                      .|.+++|+++||||+++||+++++.|++. |++|++.+|+.+.......++.. ..++..+.+|+++++.          
T Consensus         5 ~f~lenKvalITGas~GIG~a~a~~la~~-Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~   83 (251)
T d2c07a1           5 YYCGENKVALVTGAGRGIGREIAKMLAKS-VSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILT   83 (251)
T ss_dssp             CCCCSSCEEEEESTTSHHHHHHHHHHTTT-SSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             51889988999088878999999999986-99999997999999999999996399479998338999999999999998


Q ss_pred             --CCCCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHH----HHCCC-EEEEEECCEEC
Q ss_conf             --78678998168878852----12580568998779999999999----87399-09999566021
Q 029656           96 --IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        96 --~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~ii~~SS~~v~  151 (190)
                        .++|++||+|+......    ..++++..+++|+.+++++.+.+    ++.+. ++|++||...+
T Consensus        84 ~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~  150 (251)
T d2c07a1          84 EHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGL  150 (251)
T ss_dssp             HCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHH
T ss_pred             HCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHEEEEHHHHHHHHHCCCCCCCCCCEEEEEECCHHHC
T ss_conf             5498316520133322222233528887644302310121243322732024898299998787766

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=4e-16  Score=100.49  Aligned_cols=117  Identities=21%  Similarity=0.185  Sum_probs=88.9

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCC------------CC
Q ss_conf             279879997565557799999999609985999817888992345434159965997555666345------------78
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ++||+++||||+++||+++++.|+++ |++|.+.+|+.+. .+....    ....++++|+.+.+.            .+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~-G~~V~~~~~~~~~-~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   76 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFARE-GALVALCDLRPEG-KEVAEA----IGGAFFQVDLEDERERVRFVEEAAYALGR   76 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSTTH-HHHHHH----HTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHH-HHHHHH----CCCEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf             69987999389878999999999987-9999999788789-999987----59939998579999999999999985599


Q ss_pred             CCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHH----HCCC-EEEEEECCEECC
Q ss_conf             678998168878852----125805689987799999999998----7399-099995660217
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~ii~~SS~~v~~  152 (190)
                      +|++||+||...+..    ..++++..+++|+.+++++.+.+.    +.+. ++|++||...+.
T Consensus        77 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~  140 (248)
T d2d1ya1          77 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF  140 (248)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS
T ss_pred             CCEEEEECCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             8838996917999882129999999999961246766554201223222344333333211000

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=99.67  E-value=6.6e-16  Score=99.34  Aligned_cols=120  Identities=19%  Similarity=0.152  Sum_probs=91.0

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC------------C
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663457------------8
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI------------E   97 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~------------~   97 (190)
                      +++|+++||||+++||+++++.|+++ |++|.+.+|+........... ...++..+.+|+.+.+..            +
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~-Ga~V~~~~~~~~~~~~~~~~~-~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~   80 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVE-GADIAIADLVPAPEAEAAIRN-LGRRVLTVKCDVSQPGDVEAFGKQVISTFGR   80 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSCCHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHH-CCCCEEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf             99898999388888999999999987-999999979831899999997-5996799982079999999999999997399


Q ss_pred             CCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHH----HCCC-EEEEEECCEEC
Q ss_conf             678998168878852----125805689987799999999998----7399-09999566021
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~ii~~SS~~v~  151 (190)
                      +|++||+||......    ..++++..+++|+.+++++.+.+.    +.+. ++|++||....
T Consensus        81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~  143 (247)
T d2ew8a1          81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYW  143 (247)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGG
T ss_pred             CCEEEECCCCCCCCCHHHCCHHHHHHHHEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHC
T ss_conf             879998998899989476989986452013003456788998768876499876655651011

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.67  E-value=1.9e-16  Score=102.22  Aligned_cols=125  Identities=17%  Similarity=0.110  Sum_probs=95.4

Q ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC-CCCEEEEECCCCCCCC---------
Q ss_conf             000027987999756555779999999960998599981788899234543415-9965997555666345---------
Q 029656           26 SKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL---------   95 (190)
Q Consensus        26 ~~~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~---------   95 (190)
                      ..|.+++|+++||||+++||+++++.|++. |++|++.+|+.+...+...++.. ..++..+.+|+.+.+.         
T Consensus         2 ~~F~LkgK~alVTGas~GIG~aiA~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   80 (259)
T d1xq1a_           2 QRWSLKAKTVLVTGGTKGIGHAIVEEFAGF-GAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVS   80 (259)
T ss_dssp             CTTCCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf             840779998999388878999999999987-9999999799999999999977328816899665799999999999999


Q ss_pred             ----CCCCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHH----HCC-CEEEEEECCEEC
Q ss_conf             ----78678998168878852----125805689987799999999998----739-909999566021
Q 029656           96 ----IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG-ARILLTSTSEVY  151 (190)
Q Consensus        96 ----~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~~ii~~SS~~v~  151 (190)
                          ..+|++||+||......    ..++++..+++|+.+++++.+.+.    +.+ .++|++||....
T Consensus        81 ~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~  149 (259)
T d1xq1a_          81 SMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGV  149 (259)
T ss_dssp             HHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-----
T ss_pred             HHHCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHEEEEHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             984897255314652169984354899999999998754433432112120332333333222210000

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.66  E-value=1.8e-16  Score=102.34  Aligned_cols=119  Identities=18%  Similarity=0.133  Sum_probs=92.1

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC------------C
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663457------------8
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI------------E   97 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~------------~   97 (190)
                      +++|+++||||+++||+++++.|+++ |++|.+.+|+.+...+...++  ..+..++.+|+.+....            +
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   80 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGE-GAKVAFSDINEAAGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQRRLGT   80 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHH--CCCEEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf             89988999499878999999999987-999999979999999999983--887379983248889999999999998099


Q ss_pred             CCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEEC
Q ss_conf             678998168878852----1258056899877999999999987----39909999566021
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~ii~~SS~~v~  151 (190)
                      +|++||+||...+..    ..++++..+++|+.+++++.+.+.+    .+.++|++||...+
T Consensus        81 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~  142 (253)
T d1hxha_          81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSW  142 (253)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGT
T ss_pred             CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHH
T ss_conf             87578536656888756599999999998732179999999999998629843314312320

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=9.2e-16  Score=98.59  Aligned_cols=116  Identities=19%  Similarity=0.210  Sum_probs=87.4

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC------------C
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663457------------8
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI------------E   97 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~------------~   97 (190)
                      +++|+++||||+++||+++++.|+++ |++|++.+|+.+.    +.+....-+...+.+|+.+++..            +
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~-G~~V~~~~r~~~~----l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   77 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKE-GARLVACDIEEGP----LREAAEAVGAHPVVMDVADPASVERGFAEALAHLGR   77 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHH----HHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHH----HHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf             89989999388888999999999987-9999999798789----999999729849999569999999999999985599


Q ss_pred             CCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHC----CC-EEEEEECCEE
Q ss_conf             678998168878852----12580568998779999999999873----99-0999956602
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~ii~~SS~~v  150 (190)
                      +|++||+||...+..    ..++++..+++|+.+++++.+.+.+.    +. +++++||...
T Consensus        78 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~  139 (242)
T d1ulsa_          78 LDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVY  139 (242)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGG
T ss_pred             CEEEEECCCCCCCCCHHHCCCHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCC
T ss_conf             60999887444568532076011100112220044544320233233333210001213101

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.66  E-value=6.7e-16  Score=99.31  Aligned_cols=112  Identities=21%  Similarity=0.209  Sum_probs=88.1

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC------------C
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663457------------8
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI------------E   97 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~------------~   97 (190)
                      +++|+++||||+++||+++++.|++. |+.|.+.+|+....          ..+..+++|+.+.+..            +
T Consensus         5 l~gK~~lITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   73 (237)
T d1uzma1           5 FVSRSVLVTGGNRGIGLAIAQRLAAD-GHKVAVTHRGSGAP----------KGLFGVEVDVTDSDAVDRAFTAVEEHQGP   73 (237)
T ss_dssp             CCCCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSSCCC----------TTSEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCHH----------CCCEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf             99987999278888999999999987-99899997993300----------67538997538999999999999985698


Q ss_pred             CCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHH----HHCCC-EEEEEECCEECC
Q ss_conf             678998168878852----12580568998779999999999----87399-099995660217
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~ii~~SS~~v~~  152 (190)
                      +|++||+||......    ..++++..+++|+.+++.+.+.+    ++.+. ++|++||...+.
T Consensus        74 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~  137 (237)
T d1uzma1          74 VEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLW  137 (237)
T ss_dssp             CSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC--
T ss_pred             CEEEEEEECCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHCC
T ss_conf             3289865001010017658999999998765410024444101001436788637871355446

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=99.66  E-value=3.2e-16  Score=100.99  Aligned_cols=122  Identities=19%  Similarity=0.143  Sum_probs=92.5

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC-CCCEEEEECCCCCCCCC------------
Q ss_conf             27987999756555779999999960998599981788899234543415-99659975556663457------------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLLI------------   96 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~------------   96 (190)
                      +++|+++||||+++||+++++.|++. |+.|++++|+.+.......++.. ..++..+.+|+.+.+..            
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEE-GTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG   81 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHC
T ss_conf             89988999288878999999999987-99899998998999999999995299389998448999999999999999838


Q ss_pred             CCCEEEECCCCCCC-CC----CCCCCHHHHHHHHHHHHHHHHHHHH----CCC-EEEEEECCEECC
Q ss_conf             86789981688788-52----1258056899877999999999987----399-099995660217
Q 029656           97 EVDQIYHLACPASP-IF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~a~~~~~-~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~ii~~SS~~v~~  152 (190)
                      ++|++||+||.... ..    ..++++..+++|+.+++++.+.+.+    .+. ++|++||...+.
T Consensus        82 ~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~  147 (260)
T d1zema1          82 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK  147 (260)
T ss_dssp             CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS
T ss_pred             CCCEEHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECHHHCC
T ss_conf             987320000124556742223099998510202000112025677666650388777021533335

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.6e-16  Score=100.20  Aligned_cols=121  Identities=21%  Similarity=0.154  Sum_probs=91.4

Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCC--------CCCC
Q ss_conf             00279879997565557799999999609985999817888992345434159965997555666345--------7867
Q 029656           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVD   99 (190)
Q Consensus        28 ~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d   99 (190)
                      +.++||+++||||+++||+++++.|+++ |++|++.+|+.+...+...+   ...+..+.+|+.+.+.        .++|
T Consensus         3 ~~L~GK~~lITGas~GIG~aia~~la~~-G~~V~~~~r~~~~l~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~g~iD   78 (244)
T d1pr9a_           3 LFLAGRRVLVTGAGKGIGRGTVQALHAT-GARVVAVSRTQADLDSLVRE---CPGIEPVCVDLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---STTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHH---CCCCEEEEEECCCHHHHHHHHHHHCCCE
T ss_conf             8779998999389878999999999986-99999997999999999986---4897189983799999999999729963


Q ss_pred             EEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHH-----CCC-EEEEEECCEECC
Q ss_conf             8998168878852----1258056899877999999999987-----399-099995660217
Q 029656          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR-----VGA-RILLTSTSEVYG  152 (190)
Q Consensus       100 ~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~-----~~~-~ii~~SS~~v~~  152 (190)
                      ++||+||......    ..++++..+++|+.+++++.+.+.+     .+. ++|++||.....
T Consensus        79 ilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~  141 (244)
T d1pr9a_          79 LLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR  141 (244)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf             999615643222205546999999998742001599998645778747754475123310023

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.9e-16  Score=100.55  Aligned_cols=118  Identities=20%  Similarity=0.231  Sum_probs=89.7

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC------------C
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663457------------8
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI------------E   97 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~------------~   97 (190)
                      ++||+++||||+++||+++++.|++. |++|++.+|+.+.......+   .....++.+|+.+.+..            +
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNS-GARVVICDKDESGGRALEQE---LPGAVFILCDVTQEDDVKTLVSETIRRFGR   79 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---CTTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf             99987999188879999999999987-99999997998999999986---699769982279999999999999984589


Q ss_pred             CCEEEECCCCCCC-CC----CCCCCHHHHHHHHHHHHHHHHHHH----HCCCEEEEEECCEEC
Q ss_conf             6789981688788-52----125805689987799999999998----739909999566021
Q 029656           98 VDQIYHLACPASP-IF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~a~~~~~-~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~ii~~SS~~v~  151 (190)
                      +|++||+||.... ..    ..++++..+++|+.+++++.+.+.    +.+.++|++||....
T Consensus        80 iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~  142 (250)
T d1ydea1          80 LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGA  142 (250)
T ss_dssp             CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHH
T ss_pred             CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             777995364344456421466889999998711668999998468998479987666631001

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=99.65  E-value=7.5e-16  Score=99.06  Aligned_cols=125  Identities=15%  Similarity=0.100  Sum_probs=94.9

Q ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC-CCCEEEEECCCCCCCCC---------
Q ss_conf             00027987999756555779999999960998599981788899234543415-99659975556663457---------
Q 029656           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLLI---------   96 (190)
Q Consensus        27 ~~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~---------   96 (190)
                      +|.+++|+++||||+++||++++++|++. |++|++.+|+.+..++...++.. ...+.++.+|+.+.+..         
T Consensus         1 ~f~L~gK~alITGas~GIG~aia~~la~~-G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~   79 (258)
T d1ae1a_           1 RWSLKGTTALVTGGSKGIGYAIVEELAGL-GARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH   79 (258)
T ss_dssp             CCCCTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf             95989998999488879999999999987-99999997998999999999974388753799524999999999999999


Q ss_pred             ----CCCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHH----CCC-EEEEEECCEECC
Q ss_conf             ----8678998168878852----1258056899877999999999987----399-099995660217
Q 029656           97 ----EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSEVYG  152 (190)
Q Consensus        97 ----~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~ii~~SS~~v~~  152 (190)
                          .+|+++|+||......    ..+++...+++|+.+++++.+.+.+    .+. ++|++||.....
T Consensus        80 ~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~  148 (258)
T d1ae1a_          80 VFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS  148 (258)
T ss_dssp             HTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS
T ss_pred             HHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             848872898625433445762449999986566502021222333233322222334344444543455

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=8.8e-16  Score=98.70  Aligned_cols=119  Identities=19%  Similarity=0.102  Sum_probs=89.9

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCC--------CCCCEE
Q ss_conf             279879997565557799999999609985999817888992345434159965997555666345--------786789
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------IEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------~~~d~v  101 (190)
                      ++||+++||||+++||+++++.|+++ |++|.+.+|+.+...+...+   ...+..+.+|+.+.+.        .++|++
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~g~iDil   78 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHAS-GAKVVAVTRTNSDLVSLAKE---CPGIEPVCVDLGDWDATEKALGGIGPVDLL   78 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHH---STTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHH---CCCCEEEEEECCCHHHHHHHHHHCCCCEEE
T ss_conf             89988999489869999999999987-99899997988999999986---489749998489999999999971997099


Q ss_pred             EECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHH----C-CC-EEEEEECCEECC
Q ss_conf             98168878852----1258056899877999999999987----3-99-099995660217
Q 029656          102 YHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----V-GA-RILLTSTSEVYG  152 (190)
Q Consensus       102 i~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~-~~-~ii~~SS~~v~~  152 (190)
                      ||+||......    ..++++..+++|+.+++++.+.+.+    . .. ++|++||...+.
T Consensus        79 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~  139 (242)
T d1cyda_          79 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV  139 (242)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCHHHHHHCCCCCCCCCCHHHCCC
T ss_conf             9788533225699887899999999875132398987530444311557542221021025

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=99.64  E-value=9.4e-16  Score=98.53  Aligned_cols=122  Identities=16%  Similarity=0.099  Sum_probs=90.2

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHH-HHHHHHC-CCCEEEEECCCCCCCCC----------
Q ss_conf             02798799975655577999999996099859998178889923-4543415-99659975556663457----------
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD-NLRKWIG-HPRFELIRHDVTEPLLI----------   96 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~-~~~~~~~-~~~~~~~~~D~~~~~~~----------   96 (190)
                      .+++|+++||||+++||+++++.|+++ |++|.+.+|+.+...+ ...++.. ..++..+.+|+.+++..          
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~-G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATE-KAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             889998999389868999999999987-9989999698378999999999962995899975479999999999999998


Q ss_pred             --CCCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHH----HCC-C-EEEEEECCEEC
Q ss_conf             --8678998168878852----125805689987799999999998----739-9-09999566021
Q 029656           97 --EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG-A-RILLTSTSEVY  151 (190)
Q Consensus        97 --~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~-~-~ii~~SS~~v~  151 (190)
                        ++|++||+||...+..    ..++++..+++|+.+++++.+.+.    +.+ . ++|++||....
T Consensus        83 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~  149 (261)
T d1geea_          83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEK  149 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT
T ss_pred             HCCCCEEECCCEECCCCCHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHC
T ss_conf             3897776124100577624336899999999875133026788772111134555654334530111

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.6e-16  Score=99.71  Aligned_cols=121  Identities=15%  Similarity=0.074  Sum_probs=93.5

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC-CCCEEEEECCCCCCCC------------C
Q ss_conf             27987999756555779999999960998599981788899234543415-9965997555666345------------7
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------I   96 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~   96 (190)
                      +.|++++||||+++||++++++|++. |.+|++.+|+.+...+...++.. ..++..+.+|+++.+.            .
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~-G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKL-KSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCC
T ss_conf             99998999388868999999999987-99899998999999999999884299479999517998999999999999809


Q ss_pred             CCCEEEECCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHHH----HHCCC-EEEEEECCEEC
Q ss_conf             867899816887885212----580568998779999999999----87399-09999566021
Q 029656           97 EVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        97 ~~d~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~----~~~~~-~ii~~SS~~v~  151 (190)
                      ++|++||+||........    +.+++.+++|+.++.++.+.+    .+.+. ++|++||...+
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~  147 (244)
T d1yb1a_          84 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGH  147 (244)
T ss_dssp             CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-C
T ss_pred             CCCEEEEECCCCCCCCCCCCCHHHHHHHCCEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHC
T ss_conf             9764686333356532223320677740124550547889997236886599359885061005

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8e-16  Score=98.91  Aligned_cols=119  Identities=17%  Similarity=0.145  Sum_probs=89.7

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH------CCCCEEEEECCCCCCCCC-------
Q ss_conf             2798799975655577999999996099859998178889923454341------599659975556663457-------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI------GHPRFELIRHDVTEPLLI-------   96 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~~-------   96 (190)
                      ++||+++||||+++||+++++.|+++ |+.|++.+|+.+.......++.      ...++..+.+|+.+.+..       
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~-Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLEL-GSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf             79998999388878999999999987-99899997988999999999985303246964999966689999999999999


Q ss_pred             -----CCCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHC----CC-EEEEEECCE
Q ss_conf             -----8678998168878852----12580568998779999999999873----99-099995660
Q 029656           97 -----EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRV----GA-RILLTSTSE  149 (190)
Q Consensus        97 -----~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~----~~-~ii~~SS~~  149 (190)
                           ++|++||+|+......    ..++++..+++|+.+++++.+.+.+.    +. ++|++|+..
T Consensus        89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~  155 (297)
T d1yxma1          89 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT  155 (297)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC
T ss_pred             HHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             9971990799961444456735554323444442124333016889998860212122333334331

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.64  E-value=8.8e-16  Score=98.71  Aligned_cols=121  Identities=18%  Similarity=0.101  Sum_probs=92.6

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC-CCCEEEEECCCCCCCC------------CC
Q ss_conf             7987999756555779999999960998599981788899234543415-9965997555666345------------78
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~   97 (190)
                      .+|.++||||+++||+++++.|+++ |++|++.+|+.+...+...++.. ..++..+.+|+.+++.            .+
T Consensus         1 DgKValITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKE-GLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf             9988999589879999999999987-999999989889999999999961994799980069999999999999998499


Q ss_pred             CCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHH------CCC-EEEEEECCEECC
Q ss_conf             678998168878852----1258056899877999999999987------399-099995660217
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR------VGA-RILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~------~~~-~ii~~SS~~v~~  152 (190)
                      +|++||+||......    ..++++..+++|+.+++++.+.+.+      .+. ++|++||...+.
T Consensus        80 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~  145 (257)
T d2rhca1          80 VDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ  145 (257)
T ss_dssp             CSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTS
T ss_pred             CCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf             878984366568987587579999999998745666789887079999745884112334331113

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=99.64  E-value=1e-15  Score=98.39  Aligned_cols=123  Identities=17%  Similarity=0.089  Sum_probs=91.9

Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC--CCCEEEEECCCCCCCC----------
Q ss_conf             0027987999756555779999999960998599981788899234543415--9965997555666345----------
Q 029656           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        28 ~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~----------   95 (190)
                      +.+++|+++||||+++||+++++.|+++ |++|++++|+.....+...++..  ..++..+.+|+.+++.          
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAA-GANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDA   83 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHT-TEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             4279997999288888999999999987-998999979878899999999997199469998448999999999999999


Q ss_pred             --CCCCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHH----C-CC-EEEEEECCEEC
Q ss_conf             --78678998168878852----1258056899877999999999987----3-99-09999566021
Q 029656           96 --IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKR----V-GA-RILLTSTSEVY  151 (190)
Q Consensus        96 --~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~-~~-~ii~~SS~~v~  151 (190)
                        .++|++||+||......    ..+++++.+++|+.+++++.+.+.+    . .. +++..++....
T Consensus        84 ~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~  151 (260)
T d1h5qa_          84 DLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQ  151 (260)
T ss_dssp             HSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT
T ss_pred             HHCCCCEECCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCCC
T ss_conf             82997676144333346777874011111123323332245665534432234541289985112222

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.6e-15  Score=97.29  Aligned_cols=116  Identities=21%  Similarity=0.184  Sum_probs=90.1

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH---CCCCEEEEECCCCCCCCC-----------
Q ss_conf             798799975655577999999996099859998178889923454341---599659975556663457-----------
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLLI-----------   96 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~-----------   96 (190)
                      +||+++||||+++||+++++.|+++ |++|.+++|+.+...+...++.   ...++.++.+|+.+.+..           
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLK-GAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf             8989999387778999999999987-998999979788899999999875179837899720699999999999999973


Q ss_pred             -CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH----C--C--CEEEEEECCEEC
Q ss_conf             -86789981688788521258056899877999999999987----3--9--909999566021
Q 029656           97 -EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR----V--G--ARILLTSTSEVY  151 (190)
Q Consensus        97 -~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~--~--~~ii~~SS~~v~  151 (190)
                       ++|++||+||...    ..++++.+++|+.+++++.+.+.+    .  +  .++|++||...+
T Consensus        81 G~iDilVnnAg~~~----~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~  140 (254)
T d2gdza1          81 GRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGL  140 (254)
T ss_dssp             SCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT
T ss_pred             CCCCEECCCCCCCC----CCCCHHEEEEEHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHC
T ss_conf             99674146643443----2220010231012377899999999998506798579950367661

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=99.63  E-value=2.2e-15  Score=96.58  Aligned_cols=118  Identities=18%  Similarity=0.115  Sum_probs=88.5

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC------------C
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663457------------8
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI------------E   97 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~------------~   97 (190)
                      ++||+++||||+++||+++++.|+++ |++|++++|+.+...+...++  ..++..+.+|+.+.+..            .
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~-Ga~V~i~~r~~~~l~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   79 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAE-GAKVAVLDKSAERLAELETDH--GDNVLGIVGDVRSLEDQKQAASRCVARFGK   79 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf             89989999288879999999999988-998999979989999999974--997468741235099999999999998489


Q ss_pred             CCEEEECCCCCCCCC-----CCC----CCHHHHHHHHHHHHHHHHHHH----HCCCEEEEEECCEE
Q ss_conf             678998168878852-----125----805689987799999999998----73990999956602
Q 029656           98 VDQIYHLACPASPIF-----YKY----NPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~-----~~~----~~~~~~~~n~~~~~~l~~~~~----~~~~~ii~~SS~~v  150 (190)
                      +|++||+||......     ..+    .+++.+++|+.+++++.+.+.    +.+.++|+++|...
T Consensus        80 idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~  145 (276)
T d1bdba_          80 IDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAG  145 (276)
T ss_dssp             CCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGG
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECHH
T ss_conf             651100124457787311343332255566899886289999999999999866997013553031

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.62  E-value=8.8e-16  Score=98.71  Aligned_cols=119  Identities=14%  Similarity=0.083  Sum_probs=88.3

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC----CCCEEEEECCCCCCCCC---------
Q ss_conf             27987999756555779999999960998599981788899234543415----99659975556663457---------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLLI---------   96 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~---------   96 (190)
                      +++|+++||||+++||+++++.|+++ |++|++.+|+.+..++...++..    ..++..+.+|+.+....         
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFARE-GAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG   81 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             79988999386878999999999987-99899997988999999999996578767658998327999999999999999


Q ss_pred             ---CCCEEEECCCCCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCE
Q ss_conf             ---8678998168878852--------1258056899877999999999987----399099995660
Q 029656           97 ---EVDQIYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTSE  149 (190)
Q Consensus        97 ---~~d~vi~~a~~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~ii~~SS~~  149 (190)
                         ++|++||+||...+..        ..++++..+++|+.+++++.+.+.+    .+.++|+++|..
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~~  149 (264)
T d1spxa_          82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIA  149 (264)
T ss_dssp             HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTT
T ss_pred             HHCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEC
T ss_conf             80998875236611568754455421899999999998689999887651774212467530443212

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=99.62  E-value=8.6e-15  Score=93.49  Aligned_cols=119  Identities=18%  Similarity=0.116  Sum_probs=88.8

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH--HHHHHCCCCEEEEECCCCCC-C-----------
Q ss_conf             027987999756555779999999960998599981788899234--54341599659975556663-4-----------
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN--LRKWIGHPRFELIRHDVTEP-L-----------   94 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~--~~~~~~~~~~~~~~~D~~~~-~-----------   94 (190)
                      .+++|+++||||+++||+.++++|+++ |++|+++.|+.+.....  +....+...+.++.+|+... .           
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~-G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   80 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKR-NLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFD   80 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHT-CCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             889999999348888999999999987-9979999788556899999996178998799993248999999999999999


Q ss_pred             -CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH----C---C-CEEEEEECCEECC
Q ss_conf             -5786789981688788521258056899877999999999987----3---9-9099995660217
Q 029656           95 -LIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR----V---G-ARILLTSTSEVYG  152 (190)
Q Consensus        95 -~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~---~-~~ii~~SS~~v~~  152 (190)
                       ..++|++||+||...    .+.++..+++|+.+++++.+.+.+    .   . .++|++||...+.
T Consensus        81 ~~g~iDilvnnAG~~~----~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~  143 (254)
T d1sbya1          81 QLKTVDILINGAGILD----DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN  143 (254)
T ss_dssp             HHSCCCEEEECCCCCC----TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS
T ss_pred             HCCCCCEEEECCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHCC
T ss_conf             8299878984787899----89999999997287999999998775530147895699971401056

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.61  E-value=4e-15  Score=95.26  Aligned_cols=118  Identities=19%  Similarity=0.148  Sum_probs=87.5

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC----CCCEEEEECCCCCCCCC---------
Q ss_conf             27987999756555779999999960998599981788899234543415----99659975556663457---------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLLI---------   96 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~---------   96 (190)
                      +++|+++||||+++||+++++.|+++ |++|++.+|+.+...+...++..    ..++..+.+|+.+.+..         
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~-Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQE-GANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             99988999386869999999999987-99899998988999999999996488877469997568999999999999999


Q ss_pred             ---CCCEEEECCCCCCCCCC----CC----CCHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECC
Q ss_conf             ---86789981688788521----25----8056899877999999999987----39909999566
Q 029656           97 ---EVDQIYHLACPASPIFY----KY----NPVKTIKTNVIGTLNMLGLAKR----VGARILLTSTS  148 (190)
Q Consensus        97 ---~~d~vi~~a~~~~~~~~----~~----~~~~~~~~n~~~~~~l~~~~~~----~~~~ii~~SS~  148 (190)
                         ++|++||+||...+...    .+    .+...+++|+.+++++.+.+.+    .+..+|+++|.
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss  148 (272)
T d1xkqa_          82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSI  148 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCG
T ss_pred             HHCCCEEEEECCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf             8399539996775567632235501213999999987501678999886345332468863333200

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.61  E-value=2.1e-15  Score=96.70  Aligned_cols=118  Identities=19%  Similarity=0.088  Sum_probs=88.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC-CCCEEEEECCCCCCCC------------CCCC
Q ss_conf             87999756555779999999960998599981788899234543415-9965997555666345------------7867
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL------------IEVD   99 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~------------~~~d   99 (190)
                      |.++||||+++||+++++.|+++ |++|.+.+|+.+...+...++.. ..++..+.+|+.+.+.            .++|
T Consensus         2 KValITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKD-GFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   80 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEECCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCC
T ss_conf             89999287439999999999987-99899997989999999999996399389998007999999999999999839965


Q ss_pred             EEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHH----HCC--CEEEEEECCEEC
Q ss_conf             8998168878852----125805689987799999999998----739--909999566021
Q 029656          100 QIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVG--ARILLTSTSEVY  151 (190)
Q Consensus       100 ~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~ii~~SS~~v~  151 (190)
                      ++||+||......    ..+.++..+++|+.+++++.+.+.    +.+  .+++++||...+
T Consensus        81 ilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~  142 (255)
T d1gega_          81 VIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGH  142 (255)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHCCCCCCCCCCCHHHC
T ss_conf             89953664455757875344543444321210245665531134542012212343200110

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.3e-15  Score=94.21  Aligned_cols=131  Identities=14%  Similarity=0.135  Sum_probs=93.8

Q ss_pred             CCCHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH--CCCCEEEEECCCCCCCC--
Q ss_conf             99010000002798799975655577999999996099859998178889923454341--59965997555666345--
Q 029656           20 PSPLRFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI--GHPRFELIRHDVTEPLL--   95 (190)
Q Consensus        20 ~~~~~~~~~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~--   95 (190)
                      |.+.++...+++||+++||||+++||++++++|+++ |++|++++|+.+...+...++.  .......+.+|..+...  
T Consensus         2 ~~~~~f~~~~L~GK~alITGassGIG~aiA~~la~~-G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~   80 (269)
T d1xu9a_           2 PLNEEFRPEMLQGKKVIVTGASKGIGREMAYHLAKM-GAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAE   80 (269)
T ss_dssp             CCSSCCCGGGGTTCEEEESSCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHH
T ss_pred             CCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             998667833359798999588869999999999987-9989999898899999999876431132002333331577777


Q ss_pred             ----------CCCCEEEECCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHH----HCCCEEEEEECCEEC
Q ss_conf             ----------786789981688788521----25805689987799999999998----739909999566021
Q 029656           96 ----------IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAK----RVGARILLTSTSEVY  151 (190)
Q Consensus        96 ----------~~~d~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~----~~~~~ii~~SS~~v~  151 (190)
                                ..+|+++++|+.......    .+.++..+++|+.++..+.+.+.    +.+.++|++||...+
T Consensus        81 ~~~~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~  154 (269)
T d1xu9a_          81 QFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGK  154 (269)
T ss_dssp             HHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGT
T ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHEEEEHHHHHHHHHHHHHHHHHCCCCCEEECCCHHC
T ss_conf             88877898709863122122234666545688888564202104039999999988887469960474352004

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.61  E-value=2.6e-15  Score=96.20  Aligned_cols=110  Identities=19%  Similarity=0.211  Sum_probs=80.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCC---CCCCCCCEEEECCC
Q ss_conf             987999756555779999999960998--5999817888992345434159965997555666---34578678998168
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE---PLLIEVDQIYHLAC  106 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~d~vi~~a~  106 (190)
                      .++|+||||+|+||++++++|+++ ++  .|.+..|+.....         ..+.....|+.+   .....+|.+||++|
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~-~~~~~v~~~~r~~~~~~---------~~~~~~~~d~~~~~~~~~~~~d~vi~~~g   71 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSE-PTLAKVIAPARKALAEH---------PRLDNPVGPLAELLPQLDGSIDTAFCCLG   71 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHC-TTCCEEECCBSSCCCCC---------TTEECCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEEEECCCHHHC---------CCCCCCCCCHHHHHHCCCCCHHEEEEEEE
T ss_conf             998999889848999999999968-89579999717813320---------43234432101222203434001454431


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCC
Q ss_conf             8788521258056899877999999999987399-0999956602179
Q 029656          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD  153 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~  153 (190)
                      ....  .......+...|+.++.++++.+++.+. +++++|+.++++.
T Consensus        72 ~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~~  117 (212)
T d2a35a1          72 TTIK--EAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK  117 (212)
T ss_dssp             CCHH--HHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT
T ss_pred             EECC--CCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             1012--234543232200111110001232333222222332234553

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=2.5e-14  Score=91.07  Aligned_cols=118  Identities=17%  Similarity=0.142  Sum_probs=87.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHH--CCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCC--------------
Q ss_conf             98799975655577999999996--09985999817888992345434159965997555666345--------------
Q 029656           32 NMRILVTGGAGFIGSHLVDKLME--NEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL--------------   95 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~--~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~--------------   95 (190)
                      +|+|+||||+++||++++++|+.  ..|++|++.+|+.+...+.........++.++.+|+.+.+.              
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~   81 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKD   81 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHC
T ss_conf             69899908987999999999998885799999998898999999999854990899998841389998877666777504


Q ss_pred             CCCCEEEECCCCCCCCC-C-C---CCCHHHHHHHHHHHHHHHHHHHHC---------------C-CEEEEEECCE
Q ss_conf             78678998168878852-1-2---580568998779999999999873---------------9-9099995660
Q 029656           96 IEVDQIYHLACPASPIF-Y-K---YNPVKTIKTNVIGTLNMLGLAKRV---------------G-ARILLTSTSE  149 (190)
Q Consensus        96 ~~~d~vi~~a~~~~~~~-~-~---~~~~~~~~~n~~~~~~l~~~~~~~---------------~-~~ii~~SS~~  149 (190)
                      .++|++||+||...... . +   +.++..+++|+.+++.+.+.+.+.               + .++|+++|..
T Consensus        82 ~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~  156 (248)
T d1snya_          82 QGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL  156 (248)
T ss_dssp             GCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGG
T ss_pred             CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf             875567760232346764556779999999872221099999999999998332155543212346655544433

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.60  E-value=2.6e-15  Score=96.25  Aligned_cols=119  Identities=16%  Similarity=0.106  Sum_probs=88.5

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC----CCCEEEEECCCCCCCCC---------
Q ss_conf             27987999756555779999999960998599981788899234543415----99659975556663457---------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLLI---------   96 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~---------   96 (190)
                      ++||+++||||+++||+++++.|++. |++|.+.+|+.+..++...++..    ..++..+.+|+.+.+..         
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~-Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   80 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKE-GAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA   80 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf             99998999388868999999999987-99899998999999999999997489876168998207999999999999999


Q ss_pred             ---CCCEEEECCCCCCCC--C----CCCCCHHHHHHHHHHHHHHHHHHHH----CCC-EEEEEECCE
Q ss_conf             ---867899816887885--2----1258056899877999999999987----399-099995660
Q 029656           97 ---EVDQIYHLACPASPI--F----YKYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSE  149 (190)
Q Consensus        97 ---~~d~vi~~a~~~~~~--~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~ii~~SS~~  149 (190)
                         ++|++||+||.....  .    ..+.++..+++|+.+++.+.+.+.+    .+. +++++||..
T Consensus        81 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~  147 (274)
T d1xhla_          81 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVA  147 (274)
T ss_dssp             HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             HCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf             7398139984032123466644569999998887502122222333333332223332222112220

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.4e-15  Score=97.60  Aligned_cols=119  Identities=20%  Similarity=0.190  Sum_probs=90.9

Q ss_pred             CCEE-EEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC-CCCEEEEECCCCCCCCC------------C
Q ss_conf             9879-99756555779999999960998599981788899234543415-99659975556663457------------8
Q 029656           32 NMRI-LVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLLI------------E   97 (190)
Q Consensus        32 ~~~v-lItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~------------~   97 (190)
                      ||+| +||||+++||+++++.|++.+|+.|++.+|+.+..++...++.. ...+.++.+|+.+.+..            +
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~   81 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   81 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf             78699987888789999999999818999999979889999999999845996799997527889999999999986698


Q ss_pred             CCEEEECCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHC---CCEEEEEECCEE
Q ss_conf             67899816887885212----580568998779999999999873---990999956602
Q 029656           98 VDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEV  150 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~---~~~ii~~SS~~v  150 (190)
                      +|++||+||........    ++++..+++|+.+++.+.+.+.+.   ..++|++||...
T Consensus        82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~  141 (275)
T d1wmaa1          82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMS  141 (275)
T ss_dssp             EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHH
T ss_pred             CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCE
T ss_conf             079998577678888666899999999978989999999999999985697150235101

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.57  E-value=9.2e-15  Score=93.35  Aligned_cols=119  Identities=13%  Similarity=0.066  Sum_probs=88.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCE-------EEEECCCCCCCHHHHHHHHC-CCCEEEEECCCCCCCC---------
Q ss_conf             879997565557799999999609985-------99981788899234543415-9965997555666345---------
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNE-------VIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL---------   95 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~-------v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~---------   95 (190)
                      ..++||||+++||+++++.|++. |++       |.+.+|+.....+...++.. ..++..+.+|+.+.+.         
T Consensus         2 ~VvlITGas~GIG~aia~~la~~-G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~   80 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARA-ARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   80 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHH-TTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCHHHHHHHHHHHHH-CCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf             88999258878999999999984-76002667579999399999999999998559947999801799999999999999


Q ss_pred             ---CCCCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHH----HCCC-EEEEEECCEECC
Q ss_conf             ---78678998168878852----125805689987799999999998----7399-099995660217
Q 029656           96 ---IEVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVYG  152 (190)
Q Consensus        96 ---~~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~ii~~SS~~v~~  152 (190)
                         .++|++||+||......    ..++++..+++|+.+++++.+.+.    +.+. ++|++||...+.
T Consensus        81 ~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~  149 (240)
T d2bd0a1          81 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK  149 (240)
T ss_dssp             HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred             HHCCCCCEEECCCCCCCCCCCCCCCHHHHHHCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEEECHHHCC
T ss_conf             981996663134233457764569989974267776347999999973988866998529995655467

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.1e-14  Score=89.95  Aligned_cols=115  Identities=17%  Similarity=0.088  Sum_probs=88.3

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCC--------CCCCCEE
Q ss_conf             27987999756555779999999960998599981788899234543415996599755566634--------5786789
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------LIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~d~v  101 (190)
                      +++|+++||||+++||+++++.|+++ |++|++++|+.    +.+.++.....+....+|+....        ..++|++
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~-G~~Vi~~~r~~----~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~l   78 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFARE-GAKVIATDINE----SKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVL   78 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCH----HHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCH----HHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEE
T ss_conf             79988999488878999999999986-99999996998----99999986249724432012222223310000232038


Q ss_pred             EECCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHH----CCC-EEEEEECCE
Q ss_conf             981688788521----258056899877999999999987----399-099995660
Q 029656          102 YHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKR----VGA-RILLTSTSE  149 (190)
Q Consensus       102 i~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~----~~~-~ii~~SS~~  149 (190)
                      ||++|.......    .+.+...+++|+.+++.+.+.+.+    .+. ++|++||..
T Consensus        79 Vn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~  135 (245)
T d2ag5a1          79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVA  135 (245)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSB
T ss_pred             EECCCCCCCCCHHHCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCEEEEEECHH
T ss_conf             840366588883339999999999876223116777617333447784154440244

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=8.3e-15  Score=93.58  Aligned_cols=124  Identities=17%  Similarity=0.076  Sum_probs=88.6

Q ss_pred             CCCCCCCEEEEECCCC--HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC--------
Q ss_conf             0002798799975655--577999999996099859998178889923454341599659975556663457--------
Q 029656           27 KFFQSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI--------   96 (190)
Q Consensus        27 ~~~~~~~~vlItGa~G--~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~--------   96 (190)
                      .+.+++|+++||||+|  +||+++++.|++. |++|.+.+|+...................+.+|+.+.+..        
T Consensus         3 ~~~L~gK~alITGas~~~GIG~aiA~~la~~-Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (256)
T d1ulua_           3 TVDLSGKKALVMGVTNQRSLGFAIAAKLKEA-GAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVK   81 (256)
T ss_dssp             EECCTTCEEEEESCCCSSSHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             8489999799979999866999999999987-999999817477799999864015864333445699999999999999


Q ss_pred             ----CCCEEEECCCCCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHC---CCEEEEEECCEEC
Q ss_conf             ----8678998168878852--------12580568998779999999999873---9909999566021
Q 029656           97 ----EVDQIYHLACPASPIF--------YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVY  151 (190)
Q Consensus        97 ----~~d~vi~~a~~~~~~~--------~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~ii~~SS~~v~  151 (190)
                          ++|++||+|+......        ..+++...+++|+.+++.+.+.+.+.   +.++|++||....
T Consensus        82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~  151 (256)
T d1ulua_          82 EAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE  151 (256)
T ss_dssp             HHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT
T ss_pred             HHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHC
T ss_conf             8659966999655224554433311333345566765300799999999999985149889999426755

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.56  E-value=4.1e-14  Score=89.95  Aligned_cols=104  Identities=15%  Similarity=0.142  Sum_probs=76.7

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC-------------
Q ss_conf             798799975655577999999996099-859998178889923454341599659975556663457-------------
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------------   96 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-------------   96 (190)
                      +.++|+||||+++||++++++|++++. ..|++..|+.+...+ +.+. ...++.++.+|+.+.+..             
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~-l~~~-~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~   79 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE-LKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS   79 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHH-HHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH-HHHH-HCCCEEEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf             6898999589879999999999977998789999699999999-9872-0896699998468999999999999999589


Q ss_pred             -CCCEEEECCCCCCCCC-----CCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             -8678998168878852-----125805689987799999999998
Q 029656           97 -EVDQIYHLACPASPIF-----YKYNPVKTIKTNVIGTLNMLGLAK  136 (190)
Q Consensus        97 -~~d~vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~  136 (190)
                       .+|++||+||......     ..+.+++.+++|+.+++++.+.+.
T Consensus        80 ~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~  125 (250)
T d1yo6a1          80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLL  125 (250)
T ss_dssp             GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTH
T ss_pred             CCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9848999767656788865569999999999987366999999999

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=9.4e-15  Score=93.28  Aligned_cols=120  Identities=16%  Similarity=0.057  Sum_probs=84.6

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-----HHHHH----HHHCCCCEEEEECCCCCCC-----
Q ss_conf             027987999756555779999999960998599981788899-----23454----3415996599755566634-----
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-----KDNLR----KWIGHPRFELIRHDVTEPL-----   94 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-----~~~~~----~~~~~~~~~~~~~D~~~~~-----   94 (190)
                      .+++|+++||||+++||+++++.|+++ |+.|++.+++.+..     ...+.    ++..  ......+|+.+.+     
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la~~-Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~   80 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFAER-GALVVVNDLGGDFKGVGKGSSAADKVVEEIRR--RGGKAVANYDSVEAGEKL   80 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEECCCBCTTSCBCCSHHHHHHHHHHHH--TTCEEEEECCCGGGHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHHHHHHHHHH--CCCCCCCCCCHHHHHHHH
T ss_conf             859998999287888999999999986-99899984772144422138999999999742--035532221047899999


Q ss_pred             -------CCCCCEEEECCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHH----HHCCC-EEEEEECCEEC
Q ss_conf             -------5786789981688788521----2580568998779999999999----87399-09999566021
Q 029656           95 -------LIEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        95 -------~~~~d~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~ii~~SS~~v~  151 (190)
                             +.++|++||+||.......    .++++..+++|+.+++++.+.+    ++.+. +||++||...+
T Consensus        81 v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~  153 (302)
T d1gz6a_          81 VKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGI  153 (302)
T ss_dssp             HHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred             HHHHHHHCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHCEEEHHHHHHHHHHHHHHHHCCCCEEEEECCHHHC
T ss_conf             9999997299999998881699988354899999640246514368889984899986799189980775435

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.55  E-value=1.3e-14  Score=92.56  Aligned_cols=118  Identities=16%  Similarity=0.069  Sum_probs=86.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH-HHHH-CCCCEEEEECCCCCCCC------------CCC
Q ss_conf             879997565557799999999609985999817888992345-4341-59965997555666345------------786
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL-RKWI-GHPRFELIRHDVTEPLL------------IEV   98 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~D~~~~~~------------~~~   98 (190)
                      ..++||||+++||+++++.|+++ |++|.+.+++.....+.+ .++. ...++..+.+|+.+.+.            .++
T Consensus         2 pV~lITGas~GIG~a~a~~la~~-Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   80 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKA-GCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             99999398768999999999987-99899980898789999999999739928999678899999999999999972997


Q ss_pred             CEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHH----HCCC-EEEEEECCEEC
Q ss_conf             78998168878852----125805689987799999999998----7399-09999566021
Q 029656           99 DQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAK----RVGA-RILLTSTSEVY  151 (190)
Q Consensus        99 d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~-~ii~~SS~~v~  151 (190)
                      |++||+||......    ..++++..+++|+.+++++.+.+.    +.+. ++|++||...+
T Consensus        81 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~  142 (244)
T d1edoa_          81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGL  142 (244)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHH
T ss_pred             CCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHC
T ss_conf             72113333332110110302789998854013688899999999997699689998576653

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=1.8e-13  Score=86.59  Aligned_cols=113  Identities=19%  Similarity=0.196  Sum_probs=84.7

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC------CCCCCCEEEE
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663------4578678998
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP------LLIEVDQIYH  103 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~------~~~~~d~vi~  103 (190)
                      +++|+++||||+++||+++++.|++. |++|.+.+|+.    +.+.+    ....++.+|+.+.      ...++|++||
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~-Ga~V~~~~r~~----~~l~~----~~~~~~~~Dv~~~~~~~~~~~g~iD~lVn   72 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQE-GAEVTICARNE----ELLKR----SGHRYVVCDLRKDLDLLFEKVKEVDILVL   72 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHT-TCEEEEEESCH----HHHHH----TCSEEEECCTTTCHHHHHHHSCCCSEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCH----HHHHH----CCCCEEECCHHHHHHHHHHHHCCCCEEEE
T ss_conf             89898999688749999999999987-99999998999----99986----07868976368999999998489869996


Q ss_pred             CCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHH----HHCCC-EEEEEECCEEC
Q ss_conf             168878852----12580568998779999999999----87399-09999566021
Q 029656          104 LACPASPIF----YKYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus       104 ~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~ii~~SS~~v~  151 (190)
                      +||......    ..++++..+++|+.+++.+.+.+    ++.+. ++|+++|....
T Consensus        73 nAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~  129 (234)
T d1o5ia_          73 NAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVI  129 (234)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             565567762666536778777665322123333112013442346654322431023

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=99.54  E-value=1.9e-14  Score=91.70  Aligned_cols=115  Identities=22%  Similarity=0.230  Sum_probs=87.5

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC------------C
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663457------------8
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI------------E   97 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~------------~   97 (190)
                      +++|+++||||+++||+++++.|+++ |++|++.+|+.+...+...++  ..++.++++|+.+++..            +
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~-G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~   79 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFARE-GASLVAVDREERLLAEAVAAL--EAEAIAVVADVSDPKAVEAVFAEALEEFGR   79 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTC--CSSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHC--CCCEEEEEECCCCHHHHHHHHHHHHHHHCC
T ss_conf             79978999389889999999999987-999999979889999999974--896699980079999999999999998299


Q ss_pred             CCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHCCC---EEEEEEC
Q ss_conf             678998168878852----1258056899877999999999987399---0999956
Q 029656           98 VDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVGA---RILLTST  147 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~ii~~SS  147 (190)
                      +|++||+|+......    ..+.+.+.+++|+.+.+.+.+.+.+.-.   .++++|+
T Consensus        80 iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss  136 (241)
T d2a4ka1          80 LHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS  136 (241)
T ss_dssp             CCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             CCEECCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCC
T ss_conf             557614443345541022210121222223333222222222222333211000121

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.52  E-value=1.2e-13  Score=87.52  Aligned_cols=119  Identities=18%  Similarity=0.099  Sum_probs=88.6

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH-HH-CCCCEEEEECCCCCCCCC-----------
Q ss_conf             27987999756555779999999960998599981788899234543-41-599659975556663457-----------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-WI-GHPRFELIRHDVTEPLLI-----------   96 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~-~~-~~~~~~~~~~D~~~~~~~-----------   96 (190)
                      ++||+++||||+++||+++++.|+++ |++|++.+++.....+.+.. +. ....+.++.+|+.+.+..           
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~-Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~   94 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRR-GCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIF   94 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             89998999488878999999999986-99899981895688999999999609960267577799999999999999982


Q ss_pred             -CCCEEEECCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHC---CCEEEEEECCE
Q ss_conf             -86789981688788521----2580568998779999999999873---99099995660
Q 029656           97 -EVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSE  149 (190)
Q Consensus        97 -~~d~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~~~~---~~~ii~~SS~~  149 (190)
                       ++|+++|+++.......    .+.++..+++|+.+++.+.+.+.+.   +.++++++|..
T Consensus        95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~  155 (272)
T d1g0oa_          95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSIT  155 (272)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGG
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf             9977100022221012344420168999862024302430124566432233445432232

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.50  E-value=5e-14  Score=89.45  Aligned_cols=119  Identities=17%  Similarity=0.089  Sum_probs=85.9

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH-HHHHHC-CCCEEEEECCCCCCCCC-----------
Q ss_conf             27987999756555779999999960998599981788899234-543415-99659975556663457-----------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRKWIG-HPRFELIRHDVTEPLLI-----------   96 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-~~~~~~-~~~~~~~~~D~~~~~~~-----------   96 (190)
                      +.||+++||||+++||+++++.|++. |++|++..++.....+. ..++.. ...+..+.+|+.+....           
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~-G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRR-GASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf             89988999698888999999999986-99899971898689999999999719974075287899999999999999983


Q ss_pred             -CCCEEEECCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHCC---CEEEEEECCE
Q ss_conf             -8678998168878852----125805689987799999999998739---9099995660
Q 029656           97 -EVDQIYHLACPASPIF----YKYNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSE  149 (190)
Q Consensus        97 -~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~~~---~~ii~~SS~~  149 (190)
                       .+|++||+||......    ..+.++..+++|+.+.+++++.+.+.=   .++++++|..
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~  143 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIA  143 (259)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGG
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCCCCCCCCC
T ss_conf             9975899436665322333230888878876135113430134555540488644544333

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=7.1e-14  Score=88.68  Aligned_cols=123  Identities=10%  Similarity=-0.019  Sum_probs=89.4

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCHHHHHHHH---CCCCEEEEECCCCCCCC---------
Q ss_conf             27987999756555779999999960--99859998178889923454341---59965997555666345---------
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDVTEPLL---------   95 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~--~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~---------   95 (190)
                      ++++.++||||+++||+++++.|++.  .|++|++++|+.+...+...++.   ...++..+.+|+.+.+.         
T Consensus         4 L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~   83 (259)
T d1oaaa_           4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR   83 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             89988999089878999999999860348998999989999999999998740699639999755899999999987788


Q ss_pred             -------CCCCEEEECCCCCCCC----CCC---CCCHHHHHHHHHHHHHHHHHHHHC----C---CEEEEEECCEECC
Q ss_conf             -------7867899816887885----212---580568998779999999999873----9---9099995660217
Q 029656           96 -------IEVDQIYHLACPASPI----FYK---YNPVKTIKTNVIGTLNMLGLAKRV----G---ARILLTSTSEVYG  152 (190)
Q Consensus        96 -------~~~d~vi~~a~~~~~~----~~~---~~~~~~~~~n~~~~~~l~~~~~~~----~---~~ii~~SS~~v~~  152 (190)
                             ..+|+++|+||...+.    ..+   +.++..+++|+.+++++.+.+.+.    +   .++|++||...+.
T Consensus        84 ~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~  161 (259)
T d1oaaa_          84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ  161 (259)
T ss_dssp             HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred             HHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             762003674379995540025678775132999999999987102667899999999986477750101245553457

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.4e-13  Score=85.93  Aligned_cols=119  Identities=24%  Similarity=0.226  Sum_probs=82.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEE---CCCCCCCHH---HHHHHH-CCCCEEEEECCCCCCCC---------
Q ss_conf             98799975655577999999996099859998---178889923---454341-59965997555666345---------
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV---DNYFTGSKD---NLRKWI-GHPRFELIRHDVTEPLL---------   95 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~---~r~~~~~~~---~~~~~~-~~~~~~~~~~D~~~~~~---------   95 (190)
                      .+.++||||+++||+++++.|+++ |++++.+   .|+......   ....+. ...++..+.+|+.+.+.         
T Consensus         2 kkVvlITGassGIG~a~A~~la~~-Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~   80 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASD-PSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT   80 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTC-TTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHC-CCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf             988999158878999999999987-9976899986277565688999999975268844788512212676556665202


Q ss_pred             -CCCCEEEECCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHH----HHCCC-EEEEEECCEEC
Q ss_conf             -786789981688788521----2580568998779999999999----87399-09999566021
Q 029656           96 -IEVDQIYHLACPASPIFY----KYNPVKTIKTNVIGTLNMLGLA----KRVGA-RILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~a~~~~~~~~----~~~~~~~~~~n~~~~~~l~~~~----~~~~~-~ii~~SS~~v~  151 (190)
                       ..+|+++|+++.......    .+.++..+++|+.++.++.+.+    ++.+. ++|++||....
T Consensus        81 ~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~  146 (285)
T d1jtva_          81 EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGL  146 (285)
T ss_dssp             TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGT
T ss_pred             CCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEEECHHHC
T ss_conf             231023210122222122221047654122301125899999999999997599962899666554

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=99.48  E-value=2.5e-13  Score=85.78  Aligned_cols=121  Identities=12%  Similarity=0.018  Sum_probs=85.6

Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC--CCCEEEEECCCCCCCC----------
Q ss_conf             0027987999756555779999999960998599981788899234543415--9965997555666345----------
Q 029656           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG--HPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        28 ~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~----------   95 (190)
                      +.++||+++||||+++||+++++.|++. |++|++.+|+.....+...++..  ...+..+.+|+.+.+.          
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~-Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~   99 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSL-GAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK   99 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             8989998999288888999999999986-998999979888999999999974299628998136675777877655555


Q ss_pred             --CCCCEEEECCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHH----HC-CC-EEEEEECCE
Q ss_conf             --7867899816887885212----5805689987799999999998----73-99-099995660
Q 029656           96 --IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAK----RV-GA-RILLTSTSE  149 (190)
Q Consensus        96 --~~~d~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~----~~-~~-~ii~~SS~~  149 (190)
                        .++|+++|+||........    ..+...+.+|......+...+.    .. .. .++.+++..
T Consensus       100 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~  165 (294)
T d1w6ua_         100 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIY  165 (294)
T ss_dssp             HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTH
T ss_pred             HCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCH
T ss_conf             326632112333211332211100001101002110011014444300233223333332222101

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.47  E-value=6.2e-13  Score=83.72  Aligned_cols=120  Identities=18%  Similarity=0.239  Sum_probs=87.9

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCC---HHHHHHHHC-CCCEEEEECCCCCCCC----------
Q ss_conf             7987999756555779999999960998-599981788899---234543415-9965997555666345----------
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGS---KDNLRKWIG-HPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~---~~~~~~~~~-~~~~~~~~~D~~~~~~----------   95 (190)
                      .+.+++||||+|+||+++++.|+++ |+ +|+++.|+....   .+.+.++.. ...+.++.+|+.+...          
T Consensus         8 p~gt~lVTGgs~GIG~a~a~~la~~-Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~   86 (259)
T d2fr1a1           8 PTGTVLVTGGTGGVGGQIARWLARR-GAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD   86 (259)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHH-TCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCC
T ss_conf             9599999898768999999999987-998899970886477999999999974303310002343038999876402320


Q ss_pred             -CCCCEEEECCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEEC
Q ss_conf             -7867899816887885212----58056899877999999999987399-09999566021
Q 029656           96 -IEVDQIYHLACPASPIFYK----YNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY  151 (190)
Q Consensus        96 -~~~d~vi~~a~~~~~~~~~----~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~  151 (190)
                       ..+|.|||+++........    +.....+..|+.++.++.+.+...+. ++|++||....
T Consensus        87 ~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~  148 (259)
T d2fr1a1          87 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASA  148 (259)
T ss_dssp             TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEEECCHHHC
T ss_conf             11331234322222222223365778988764200110677777641687257640300220

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=99.47  E-value=3.8e-13  Score=84.82  Aligned_cols=111  Identities=18%  Similarity=0.266  Sum_probs=78.8

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH-HHH--HHCCCCEEEEECCCCCCCC-----CCCCEEE
Q ss_conf             7987999756555779999999960998599981788899234-543--4159965997555666345-----7867899
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN-LRK--WIGHPRFELIRHDVTEPLL-----IEVDQIY  102 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~-~~~--~~~~~~~~~~~~D~~~~~~-----~~~d~vi  102 (190)
                      +.+||+||||+|+||++++++|+++ |++|+++.|+....... ...  ......+.++.+|+.+...     .+.+.++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~-G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~   80 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISL-GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVI   80 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHCCCCCHHH
T ss_conf             9899999899878999999999968-797999989874346567787765203895899954101023455405753022


Q ss_pred             ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECCC
Q ss_conf             81688788521258056899877999999999987399-0999956602179
Q 029656          103 HLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYGD  153 (190)
Q Consensus       103 ~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~~  153 (190)
                      ++++.....           .|...+.++++++++.+. ++++.||.+++..
T Consensus        81 ~~~~~~~~~-----------~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~  121 (312)
T d1qyda_          81 SALAGGVLS-----------HHILEQLKLVEAIKEAGNIKRFLPSEFGMDPD  121 (312)
T ss_dssp             ECCCCSSSS-----------TTTTTHHHHHHHHHHSCCCSEEECSCCSSCTT
T ss_pred             HHHHHCCCC-----------CCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             221111211-----------00001047999999845884899920433577

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.6e-13  Score=82.99  Aligned_cols=119  Identities=19%  Similarity=0.213  Sum_probs=87.9

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCC------------CC
Q ss_conf             279879997565557799999999609985999817888992345434159965997555666345------------78
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IE   97 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~   97 (190)
                      ++||+++||||+++||++++++|+++ |++|++++|+.+.......++  .........|+.+...            ..
T Consensus         3 lkGKvalITGas~GIG~aia~~la~~-G~~V~~~~r~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (248)
T d2o23a1           3 VKGLVAVITGGASGLGLATAERLVGQ-GASAVLLDLPNSGGEAQAKKL--GNNCVFAPADVTSEKDVQTALALAKGKFGR   79 (248)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECTTSSHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHH--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             89988999188878999999999987-998999968867899999983--787533322333210112222333223223


Q ss_pred             CCEEEECCCCCCCCC----------CCCCCHHHHHHHHHHHHHHHHHHHHC----------CC-EEEEEECCEEC
Q ss_conf             678998168878852----------12580568998779999999999873----------99-09999566021
Q 029656           98 VDQIYHLACPASPIF----------YKYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVY  151 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~----------~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~-~ii~~SS~~v~  151 (190)
                      .|.++++++......          ..+.++..+++|+.+++++.+++.+.          +. ++|++||...+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~  154 (248)
T d2o23a1          80 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAF  154 (248)
T ss_dssp             CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHC
T ss_conf             553421222356787432112220149999987767877789999871899998521036896699995551322

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=3.9e-13  Score=84.80  Aligned_cols=112  Identities=19%  Similarity=0.099  Sum_probs=77.7

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCC--------------CC
Q ss_conf             7987999756555779999999960998599981788899234543415996599755566634--------------57
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL--------------LI   96 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~--------------~~   96 (190)
                      ++|+++||||+++||+++++.|+++ |++|.+++++......         .......+..+..              ..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~-G~~V~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   70 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRAR-NWWVASIDVVENEEAS---------ASVIVKMTDSFTEQADQVTAEVGKLLGDQ   70 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSCCTTSS---------EEEECCCCSCHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCC---------CCCEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             9799999898988999999999987-9999999688440025---------66366225675899999999999985789


Q ss_pred             CCCEEEECCCCCCCC-C----CCCCCHHHHHHHHHHHHHHHHHHHHC---CCEEEEEECCEECC
Q ss_conf             867899816887885-2----12580568998779999999999873---99099995660217
Q 029656           97 EVDQIYHLACPASPI-F----YKYNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus        97 ~~d~vi~~a~~~~~~-~----~~~~~~~~~~~n~~~~~~l~~~~~~~---~~~ii~~SS~~v~~  152 (190)
                      ++|++||+||..... .    ..+.++..+++|+.+++++.+.+.+.   +.++|++||.....
T Consensus        71 ~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~  134 (236)
T d1dhra_          71 KVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD  134 (236)
T ss_dssp             CEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS
T ss_pred             CCEEEEECCCCCCCCCCHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCHHHCC
T ss_conf             8269999873334466310088999999998700589999999987400145125771087707

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.43  E-value=4.1e-13  Score=84.65  Aligned_cols=111  Identities=22%  Similarity=0.214  Sum_probs=77.4

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC--------------CCCC
Q ss_conf             98799975655577999999996099859998178889923454341599659975556663--------------4578
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP--------------LLIE   97 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~--------------~~~~   97 (190)
                      ..+|+||||+++||++++++|+++ |++|++++|+......         ......+|..+.              ...+
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~-G~~V~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   71 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKN-GYTVLNIDLSANDQAD---------SNILVDGNKNWTEQEQSILEQTASSLQGSQ   71 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHT-TEEEEEEESSCCTTSS---------EEEECCTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCHHCCC---------CCCEECCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             887999978898999999999987-9999999798102112---------353421556730489999999999845798


Q ss_pred             CCEEEECCCCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHHHC---CCEEEEEECCEECC
Q ss_conf             67899816887885-212----580568998779999999999873---99099995660217
Q 029656           98 VDQIYHLACPASPI-FYK----YNPVKTIKTNVIGTLNMLGLAKRV---GARILLTSTSEVYG  152 (190)
Q Consensus        98 ~d~vi~~a~~~~~~-~~~----~~~~~~~~~n~~~~~~l~~~~~~~---~~~ii~~SS~~v~~  152 (190)
                      +|++||+||..... ...    +.++..+++|+.+++.+.+.+.+.   +.++|++||...+.
T Consensus        72 iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~  134 (235)
T d1ooea_          72 VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG  134 (235)
T ss_dssp             EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS
T ss_pred             EEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCC
T ss_conf             369997773343465311376888766756677888887642123455522899945687637

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.41  E-value=2.2e-13  Score=86.13  Aligned_cols=113  Identities=15%  Similarity=0.113  Sum_probs=79.8

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCC------------CCCCEE
Q ss_conf             79997565557799999999609985999817888992345434159965997555666345------------786789
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------------IEVDQI  101 (190)
Q Consensus        34 ~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------------~~~d~v  101 (190)
                      +++||||+++||+.+++.|+++ |++|.+.+|+.+..++ +....    ..+..+|+.+...            .++|++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~-Ga~V~i~~r~~~~~~~-~~~~~----~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiL   75 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEA-GHTVACHDESFKQKDE-LEAFA----ETYPQLKPMSEQEPAELIEAVTSAYGQVDVL   75 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHT-TCEEEECCGGGGSHHH-HHHHH----HHCTTSEECCCCSHHHHHHHHHHHHSCCCEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHH-HHHHH----CCEEEECCCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf             8999898887899999999987-9989999798889999-98621----8188813399999999999999975999999


Q ss_pred             EECCCCCCC-CC----CCCCCHHHHHHHHHHHHHHHHHH----HHCC-CEEEEEECCEECC
Q ss_conf             981688788-52----12580568998779999999999----8739-9099995660217
Q 029656          102 YHLACPASP-IF----YKYNPVKTIKTNVIGTLNMLGLA----KRVG-ARILLTSTSEVYG  152 (190)
Q Consensus       102 i~~a~~~~~-~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~-~~ii~~SS~~v~~  152 (190)
                      ||+||.... ..    ..++++..+++|+.+++++.+.+    ++.+ .++|++||...+.
T Consensus        76 VnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~  136 (252)
T d1zmta1          76 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG  136 (252)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS
T ss_pred             EECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCC
T ss_conf             9898688899992669999999999997199999999998762123110120000000012

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=99.37  E-value=8.6e-12  Score=77.73  Aligned_cols=106  Identities=14%  Similarity=0.142  Sum_probs=77.5

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCC------CCCCCEEEEC
Q ss_conf             7987999756555779999999960998599981788899234543415996599755566634------5786789981
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL------LIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~------~~~~d~vi~~  104 (190)
                      +.++|+||||+|+||++++++|+++ |++|+++.|+.....  ...+.....+.++++|+.+..      +.+++.+++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~-G~~V~~l~R~~~~~~--~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~   78 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAV-GHHVRAQVHSLKGLI--AEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFIN   78 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHT-TCCEEEEESCSCSHH--HHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHC-CCEEEEEECCCCHHH--HHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEE
T ss_conf             9899999898728999999999968-896999977842001--2341004897899955899589999986178457860


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEEC
Q ss_conf             688788521258056899877999999999987399-09999566021
Q 029656          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVY  151 (190)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~  151 (190)
                      .....            ..++..+.++++++.+.+. ++++.||....
T Consensus        79 ~~~~~------------~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~  114 (350)
T d1xgka_          79 TTSQA------------GDEIAIGKDLADAAKRAGTIQHYIYSSMPDH  114 (350)
T ss_dssp             CCSTT------------SCHHHHHHHHHHHHHHHSCCSEEEEEECCCG
T ss_pred             CCCCC------------CHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             46300------------0022343699999998199734787502454

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.29  E-value=2.1e-11  Score=75.65  Aligned_cols=115  Identities=18%  Similarity=0.170  Sum_probs=81.3

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCC--EEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCC-----CCCCCEEEE
Q ss_conf             7987999756555779999999960998--599981788899234543415996599755566634-----578678998
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKN--EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vi~  103 (190)
                      ..++|+||||+|+||+++++.|+++ |+  .|+...|+.    .....+  ..++.++.+|+.+..     +.++|.|||
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~-g~~v~v~~~~R~~----~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~d~vi~   74 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEG-SDKFVAKGLVRSA----QGKEKI--GGEADVFIGDITDADSINPAFQGIDALVI   74 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHT-TTTCEEEEEESCH----HHHHHT--TCCTTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCCEEEEEECCCH----HHHHHC--CCCCEEEEEEECCCCCCCCCCCCCEEEEE
T ss_conf             9888999898658999999999977-9937999972787----788755--57828998530123323232121002589


Q ss_pred             CCCCCCCCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCEECC
Q ss_conf             168878852-------------1258056899877999999999987399-099995660217
Q 029656          104 LACPASPIF-------------YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSEVYG  152 (190)
Q Consensus       104 ~a~~~~~~~-------------~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~v~~  152 (190)
                      +++......             ..........+|+.++.+++..+..... +..+.|+...+.
T Consensus        75 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  137 (252)
T d2q46a1          75 LTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTN  137 (252)
T ss_dssp             CCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTC
T ss_pred             EEEECCCCCCCCCHHHHHHCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf             985025554212645541010012460432100024420001222122222110012345578

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=5.1e-11  Score=73.67  Aligned_cols=119  Identities=17%  Similarity=0.058  Sum_probs=80.4

Q ss_pred             CCCCEEEEECCCC--HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH-HCCCCEEEEECCCCCCC------------
Q ss_conf             2798799975655--57799999999609985999817888992345434-15996599755566634------------
Q 029656           30 QSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW-IGHPRFELIRHDVTEPL------------   94 (190)
Q Consensus        30 ~~~~~vlItGa~G--~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~------------   94 (190)
                      +++|+++||||++  +||+++++.|+++ |++|++.+|+.. ......++ ...........|+.+..            
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~-G~~V~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHRE-GAELAFTYQNDK-LKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV   80 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHT-TCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHHC-CCEEEEEECCHH-HHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHC
T ss_conf             8998799989998511899999999986-999999958889-99999999851588402100232178999999986530


Q ss_pred             CCCCCEEEECCCCCCCCCCC---------CCCHHHHHHHHHHHHHHHHHHHHCC---CEEEEEECCEE
Q ss_conf             57867899816887885212---------5805689987799999999998739---90999956602
Q 029656           95 LIEVDQIYHLACPASPIFYK---------YNPVKTIKTNVIGTLNMLGLAKRVG---ARILLTSTSEV  150 (190)
Q Consensus        95 ~~~~d~vi~~a~~~~~~~~~---------~~~~~~~~~n~~~~~~l~~~~~~~~---~~ii~~SS~~v  150 (190)
                      ...+|.++|+++........         +.+...+..|..+...+.+.+...-   ..++++||...
T Consensus        81 ~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~  148 (258)
T d1qsga_          81 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGA  148 (258)
T ss_dssp             CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGG
T ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf             35555378841136654433100110069999999998888999999998875158818999653464

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=99.24  E-value=2e-11  Score=75.77  Aligned_cols=103  Identities=17%  Similarity=0.281  Sum_probs=72.2

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH--HHH--HHCCCCEEEEECCCCCCCC-----CCCCEE
Q ss_conf             7987999756555779999999960998599981788899234--543--4159965997555666345-----786789
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN--LRK--WIGHPRFELIRHDVTEPLL-----IEVDQI  101 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~--~~~--~~~~~~~~~~~~D~~~~~~-----~~~d~v  101 (190)
                      +.+||+||||+|+||++++++|+++ |++|++++|........  ...  ......+.++.+|+.+...     .+.+.+
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~-G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v   80 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDL-GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVV   80 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHT-TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCEEE
T ss_conf             9898999899868999999999978-896999988875443266777777642488289991010002344443001145


Q ss_pred             EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEECCE
Q ss_conf             981688788521258056899877999999999987399-099995660
Q 029656          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTSTSE  149 (190)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS~~  149 (190)
                      +|+++...               ..++.++++++...+. ++++.|+..
T Consensus        81 i~~~~~~~---------------~~~~~~~~~a~~~~~~~~~~~~s~~~  114 (307)
T d1qyca_          81 ISTVGSLQ---------------IESQVNIIKAIKEVGTVKRFFPSEFG  114 (307)
T ss_dssp             EECCCGGG---------------SGGGHHHHHHHHHHCCCSEEECSCCS
T ss_pred             EECCCCCC---------------CCHHHHHHHHHHHHCCCCCEEEECCC
T ss_conf             42035432---------------20136788999974233310011134

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.22  E-value=8.5e-13  Score=83.01  Aligned_cols=84  Identities=8%  Similarity=0.082  Sum_probs=62.8

Q ss_pred             HCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCC-----CCCCC
Q ss_conf             0000027987999756555779999999960998599981788899234543415996599755566634-----57867
Q 029656           25 FSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPL-----LIEVD   99 (190)
Q Consensus        25 ~~~~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d   99 (190)
                      .....+++++++||||+|+||+.+++.|+++ |.+|++++|+.+...+....+.....+....+|+.+..     ..++|
T Consensus        16 ~~~~~l~gK~vlItGasgGIG~~ia~~la~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iD   94 (191)
T d1luaa1          16 AAGGSVKGKKAVVLAGTGPVGMRSAALLAGE-GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAH   94 (191)
T ss_dssp             HTTSCCTTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCS
T ss_pred             HCCCCCCCCEEEEECCCHHHHHHHHHHHHHH-CCCHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHCCCC
T ss_conf             7599999999999799779999999999861-111121024568999999988740211121100023899999853768


Q ss_pred             EEEECCCCCC
Q ss_conf             8998168878
Q 029656          100 QIYHLACPAS  109 (190)
Q Consensus       100 ~vi~~a~~~~  109 (190)
                      +|||+||...
T Consensus        95 ilin~Ag~g~  104 (191)
T d1luaa1          95 FVFTAGAIGL  104 (191)
T ss_dssp             EEEECCCTTC
T ss_pred             EEEECCCCCC
T ss_conf             6202676460

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=99.22  E-value=9.9e-11  Score=72.15  Aligned_cols=80  Identities=15%  Similarity=0.053  Sum_probs=59.8

Q ss_pred             CCCCCEEEEECCCC--HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC-CCCEEEEECCCCCCCC----------
Q ss_conf             02798799975655--5779999999960998599981788899234543415-9965997555666345----------
Q 029656           29 FQSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-HPRFELIRHDVTEPLL----------   95 (190)
Q Consensus        29 ~~~~~~vlItGa~G--~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~----------   95 (190)
                      ++++|+++||||+|  +||+++++.|+++ |++|++.+|+. .....+.++.. .....+...|+.+...          
T Consensus         2 ~L~gK~alITGaag~~GIG~AiA~~la~~-Ga~V~i~~r~~-~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   79 (274)
T d2pd4a1           2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQ-GATLAFTYLNE-SLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK   79 (274)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHHTT-TCEEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEECCH-HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             37998799979999838999999999987-99999996887-99999999986179526763033311457889999999


Q ss_pred             --CCCCEEEECCCCCCC
Q ss_conf             --786789981688788
Q 029656           96 --IEVDQIYHLACPASP  110 (190)
Q Consensus        96 --~~~d~vi~~a~~~~~  110 (190)
                        ..+|+++|+++....
T Consensus        80 ~~g~id~lV~nag~~~~   96 (274)
T d2pd4a1          80 DLGSLDFIVHSVAFAPK   96 (274)
T ss_dssp             HTSCEEEEEECCCCCCG
T ss_pred             HCCCCCEEEEECCCCCC
T ss_conf             74998768841221134

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=99.09  E-value=2e-09  Score=65.29  Aligned_cols=116  Identities=16%  Similarity=0.087  Sum_probs=72.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH---CCCCEEEEECCC-----------------CC
Q ss_conf             8799975655577999999996099859998178889923454341---599659975556-----------------66
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---GHPRFELIRHDV-----------------TE   92 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~-----------------~~   92 (190)
                      -.++||||+++||+++++.|+++ |++|.+.+++.....+.+....   .......+++|.                 .+
T Consensus         3 pVAlITGas~GIG~aiA~~la~~-Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~   81 (284)
T d1e7wa_           3 PVALVTGAAKRLGRSIAEGLHAE-GYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTL   81 (284)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC
T ss_conf             88999488888999999999986-99899983898889999999998535885699974112223445211122456788


Q ss_pred             CC------------CCCCCEEEECCCCCCCCCCCC----CC--------------HHHHHHHHHHHHHHHHHHHHC----
Q ss_conf             34------------578678998168878852125----80--------------568998779999999999873----
Q 029656           93 PL------------LIEVDQIYHLACPASPIFYKY----NP--------------VKTIKTNVIGTLNMLGLAKRV----  138 (190)
Q Consensus        93 ~~------------~~~~d~vi~~a~~~~~~~~~~----~~--------------~~~~~~n~~~~~~l~~~~~~~----  138 (190)
                      .+            +.++|++||+||...+....+    .+              ...+.+|..+.+.+.+.+.+.    
T Consensus        82 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~  161 (284)
T d1e7wa_          82 FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGT  161 (284)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCHHHHH
T ss_conf             99999999999998299778996477668874554898886211015788888888887632001332101122012201


Q ss_pred             -----C-C-EEEEEECCE
Q ss_conf             -----9-9-099995660
Q 029656          139 -----G-A-RILLTSTSE  149 (190)
Q Consensus       139 -----~-~-~ii~~SS~~  149 (190)
                           + . +++++++..
T Consensus       162 ~~~~~~~~~~ii~~~s~~  179 (284)
T d1e7wa_         162 PAKHRGTNYSIINMVDAM  179 (284)
T ss_dssp             CGGGSCSCEEEEEECCTT
T ss_pred             HHHHCCCCCCCCCCCCCC
T ss_conf             887638988643333333

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=99.09  E-value=2.5e-10  Score=69.99  Aligned_cols=119  Identities=13%  Similarity=0.079  Sum_probs=74.8

Q ss_pred             CCCCCEEEEECCC--CHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCC-----------
Q ss_conf             0279879997565--557799999999609985999817888992345434159965997555666345-----------
Q 029656           29 FQSNMRILVTGGA--GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----------   95 (190)
Q Consensus        29 ~~~~~~vlItGa~--G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----------   95 (190)
                      ++++|+++||||+  .+||+++++.|++. |++|++.+|+.....+.+.+.. ..+...+++|+.++..           
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~-Ga~Vil~~~~~~~~~~~~~~~~-~~~~~~~~~dv~~~~~~~~~~~~v~~~   80 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQ-GAQLVLTGFDRLRLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEA   80 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHT-TCEEEEEECSCHHHHHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHC-CCCEEEEEEECCCCCCCCCCCCHHHHC
T ss_conf             77997799979999977999999999986-9999999698589999999870-886026764112332212211001210


Q ss_pred             ----CCCCEEEECCCCCCCCC-----CCC----CCHHHHHHHHHHHHHHHHHHHHCCC--EEEEEECCE
Q ss_conf             ----78678998168878852-----125----8056899877999999999987399--099995660
Q 029656           96 ----IEVDQIYHLACPASPIF-----YKY----NPVKTIKTNVIGTLNMLGLAKRVGA--RILLTSTSE  149 (190)
Q Consensus        96 ----~~~d~vi~~a~~~~~~~-----~~~----~~~~~~~~n~~~~~~l~~~~~~~~~--~ii~~SS~~  149 (190)
                          ..+|+++|+++......     ..+    .+...+..|........+.......  ..++++|..
T Consensus        81 ~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~  149 (268)
T d2h7ma1          81 IGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFD  149 (268)
T ss_dssp             HCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             024787534300034467533334552111114456666566667778888776402223322222233

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.06  E-value=8.8e-10  Score=67.16  Aligned_cols=122  Identities=11%  Similarity=0.007  Sum_probs=74.5

Q ss_pred             CCCCCCEEEEECCCC--HHHHHHHHHHHHCCCCEEEEECCCCCCCH------------HHHHHHHCCCCE-EEEECC--C
Q ss_conf             002798799975655--57799999999609985999817888992------------345434159965-997555--6
Q 029656           28 FFQSNMRILVTGGAG--FIGSHLVDKLMENEKNEVIVVDNYFTGSK------------DNLRKWIGHPRF-ELIRHD--V   90 (190)
Q Consensus        28 ~~~~~~~vlItGa~G--~iG~~l~~~L~~~~~~~v~~~~r~~~~~~------------~~~~~~~~~~~~-~~~~~D--~   90 (190)
                      +.+++|+++||||+|  +||+++++.|+++ |++|++.+|+.....            ............ .....|  +
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~-Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAA-GAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVF   82 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHT-TCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTC
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             078999799989999966999999999987-9989998476255566899987555454331344444442223343303


Q ss_pred             CCC------------------------------CCCCCCEEEECCCCCCC--C----CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             663------------------------------45786789981688788--5----21258056899877999999999
Q 029656           91 TEP------------------------------LLIEVDQIYHLACPASP--I----FYKYNPVKTIKTNVIGTLNMLGL  134 (190)
Q Consensus        91 ~~~------------------------------~~~~~d~vi~~a~~~~~--~----~~~~~~~~~~~~n~~~~~~l~~~  134 (190)
                      .+.                              .+.++|++||+||....  .    ...+++...+++|+.+.+.+.+.
T Consensus        83 ~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~  162 (297)
T d1d7oa_          83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH  162 (297)
T ss_dssp             CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             55100013444455552034999999999999984897612432354312355234321001122222102456544467


Q ss_pred             HHHCC---CEEEEEECCEE
Q ss_conf             98739---90999956602
Q 029656          135 AKRVG---ARILLTSTSEV  150 (190)
Q Consensus       135 ~~~~~---~~ii~~SS~~v  150 (190)
                      +....   .+++.+++.+.
T Consensus       163 ~~~~~~~~g~~~~~~~~~~  181 (297)
T d1d7oa_         163 FLPIMNPGGASISLTYIAS  181 (297)
T ss_dssp             HGGGEEEEEEEEEEECGGG
T ss_pred             HHHHHHCCCCCEEEEEHHH
T ss_conf             7777633786301100110

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.03  E-value=2.3e-09  Score=64.97  Aligned_cols=109  Identities=23%  Similarity=0.205  Sum_probs=73.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCC-----------CCCCE
Q ss_conf             9879997565557799999999609985999817888992345434159965997555666345-----------78678
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL-----------IEVDQ  100 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~-----------~~~d~  100 (190)
                      .|+++||||+++||+++++.|+++ |++|++.+|+.+..           .....++|+.+...           ...+.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~-Ga~V~i~~~~~~~~-----------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~   68 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKAR-GYRVVVLDLRREGE-----------DLIYVEGDVTREEDVRRAVARAQEEAPLFA   68 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHH-TCEEEEEESSCCSS-----------SSEEEECCTTCHHHHHHHHHHHHHHSCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCC-----------CCEEEECCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             988999289888999999999987-99899997873246-----------541864352320456778876520121121


Q ss_pred             EEECCCCCCCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHC----------CC-EEEEEECCEECC
Q ss_conf             99816887885--------212580568998779999999999873----------99-099995660217
Q 029656          101 IYHLACPASPI--------FYKYNPVKTIKTNVIGTLNMLGLAKRV----------GA-RILLTSTSEVYG  152 (190)
Q Consensus       101 vi~~a~~~~~~--------~~~~~~~~~~~~n~~~~~~l~~~~~~~----------~~-~ii~~SS~~v~~  152 (190)
                      +++.++.....        ...+.++..+++|......+.+.+...          +. ++|++||...+.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~  139 (241)
T d1uaya_          69 VVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE  139 (241)
T ss_dssp             EEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH
T ss_pred             HHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHCC
T ss_conf             01221014434434433200278999999987566689888888876666540346741441322344324

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.94  E-value=7.6e-09  Score=62.24  Aligned_cols=102  Identities=18%  Similarity=0.160  Sum_probs=64.2

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH-H--HCCCCEEEEECCCCCCC----------------
Q ss_conf             7999756555779999999960998599981788899234543-4--15996599755566634----------------
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRK-W--IGHPRFELIRHDVTEPL----------------   94 (190)
Q Consensus        34 ~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~-~--~~~~~~~~~~~D~~~~~----------------   94 (190)
                      +++||||+++||+++++.|+++ |++|++.+|+.+...+.+.. +  ...........|..+..                
T Consensus         3 vAlVTGas~GIG~aia~~la~~-G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQ-GFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA   81 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHT-TCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             8999089878999999999987-998999979816789999999976128845887403201034899999999999998


Q ss_pred             CCCCCEEEECCCCCCCCCCC---------------CCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             57867899816887885212---------------5805689987799999999998
Q 029656           95 LIEVDQIYHLACPASPIFYK---------------YNPVKTIKTNVIGTLNMLGLAK  136 (190)
Q Consensus        95 ~~~~d~vi~~a~~~~~~~~~---------------~~~~~~~~~n~~~~~~l~~~~~  136 (190)
                      +.++|++||+||...+....               ..+...+..|............
T Consensus        82 ~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (266)
T d1mxha_          82 FGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFA  138 (266)
T ss_dssp             HSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HCCCCEEEECCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHC
T ss_conf             299889997785677876434331100000122211100002233103420011101

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.94  E-value=8.1e-09  Score=62.10  Aligned_cols=119  Identities=7%  Similarity=0.003  Sum_probs=74.4

Q ss_pred             CCEEEEEC--CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH---------C----CCCEEEEECCC------
Q ss_conf             98799975--655577999999996099859998178889923454341---------5----99659975556------
Q 029656           32 NMRILVTG--GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWI---------G----HPRFELIRHDV------   90 (190)
Q Consensus        32 ~~~vlItG--a~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~---------~----~~~~~~~~~D~------   90 (190)
                      ++.+||||  ++.+||+.+++.|+++ |++|.+..+.............         .    ........+|+      
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~-GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKR-NVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN   80 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHT-TCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHC
T ss_conf             95899969999972999999999986-99899970741555566778777666678998886640321036320001110


Q ss_pred             --------------CCCC------------CCCCCEEEECCCCCCCC------CCCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             --------------6634------------57867899816887885------212580568998779999999999873
Q 029656           91 --------------TEPL------------LIEVDQIYHLACPASPI------FYKYNPVKTIKTNVIGTLNMLGLAKRV  138 (190)
Q Consensus        91 --------------~~~~------------~~~~d~vi~~a~~~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~~  138 (190)
                                    .+..            +.++|++||++|.....      ...+++...+++|+.++..+.+.+.+.
T Consensus        81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~  160 (329)
T d1uh5a_          81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI  160 (329)
T ss_dssp             GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             11023444456644017999999999999838977221321000135787445425666522024335778888887750


Q ss_pred             ---CCEEEEEECCEEC
Q ss_conf             ---9909999566021
Q 029656          139 ---GARILLTSTSEVY  151 (190)
Q Consensus       139 ---~~~ii~~SS~~v~  151 (190)
                         +.++|.+||.+..
T Consensus       161 m~~~GsIv~iss~~~~  176 (329)
T d1uh5a_         161 MKPQSSIISLTYHASQ  176 (329)
T ss_dssp             EEEEEEEEEEECGGGT
T ss_pred             CCCCCCCCCCEEEHHC
T ss_conf             2333333210000000

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=98.80  E-value=5.4e-09  Score=63.03  Aligned_cols=97  Identities=14%  Similarity=0.048  Sum_probs=58.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf             98799975655577999999996099859998178889923454341599659975556663457867899816887885
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI  111 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~~~~~~  111 (190)
                      +|.++||||+++||+++++.|++. |++|++++|+.......+....   .......|........+|.++++|+.... 
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~-Ga~V~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~~~~id~lv~~Ag~~~~-   75 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAA-GHQIVGIDIRDAEVIADLSTAE---GRKQAIADVLAKCSKGMDGLVLCAGLGPQ-   75 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEESSSSSEECCTTSHH---HHHHHHHHHHTTCTTCCSEEEECCCCCTT-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHCCHH---HHHHHHHHHHHHHCCCCCEEEECCCCCCC-
T ss_conf             989999088889999999999987-9989999798488887742888---79999999999838987499986877774-


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             212580568998779999999999
Q 029656          112 FYKYNPVKTIKTNVIGTLNMLGLA  135 (190)
Q Consensus       112 ~~~~~~~~~~~~n~~~~~~l~~~~  135 (190)
                        ..........|..+...+.+..
T Consensus        76 --~~~~~~~~~~~~~~~~~~~~~~   97 (257)
T d1fjha_          76 --TKVLGNVVSVNYFGATELMDAF   97 (257)
T ss_dssp             --CSSHHHHHHHHTHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             --7899999888877777888876

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.18  E-value=1.2e-05  Score=45.38  Aligned_cols=113  Identities=12%  Similarity=0.120  Sum_probs=75.0

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHH----CCCCEEEEECCCCCCCCCCCCEEEEC
Q ss_conf             2798799975655577999999996099-859998178889923454341----59965997555666345786789981
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWI----GHPRFELIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~d~vi~~  104 (190)
                      .+.|||.|.| .|++|..++..|+.++- .++.++|++.....-...++.    ..........|.  .+..++|+|+.+
T Consensus         3 ~~~~KI~IIG-aG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~--~~~~~adivvit   79 (146)
T d1ez4a1           3 PNHQKVVLVG-DGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY--SDCKDADLVVIT   79 (146)
T ss_dssp             TTBCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG--GGGTTCSEEEEC
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEECCH--HHHCCCCEEEEE
T ss_conf             9997799989-8888999999999569773799863022156778987714464458856740657--774206689984


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEEC
Q ss_conf             688788521258056899877999999999987399-0999956
Q 029656          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST  147 (190)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS  147 (190)
                      +|....  ......+.+..|......+.+.+.+++. -++.+.|
T Consensus        80 ag~~~~--~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt  121 (146)
T d1ez4a1          80 AGAPQK--PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA  121 (146)
T ss_dssp             CCC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             355669--998778998888999999999985248986899957

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.18  E-value=1.9e-05  Score=44.36  Aligned_cols=111  Identities=12%  Similarity=0.147  Sum_probs=72.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCC-----HHHHHHHHC--CCCEEEE-ECCCCCCCCCCCCEEEE
Q ss_conf             8799975655577999999996099-8599981788899-----234543415--9965997-55566634578678998
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGS-----KDNLRKWIG--HPRFELI-RHDVTEPLLIEVDQIYH  103 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~-----~~~~~~~~~--~~~~~~~-~~D~~~~~~~~~d~vi~  103 (190)
                      |||.|.||+|.+|..++..|+.++- .++.+++++....     ...+.+...  ....+.. ..+-...+..++|+||-
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHCCCEEEEE
T ss_conf             97999999976999999999827865333023605566766264432100025556577445687544777324348999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEE
Q ss_conf             1688788521258056899877999999999987399-09999
Q 029656          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLT  145 (190)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~  145 (190)
                      +||...  ...+...+.+..|......+++...++.. .++.+
T Consensus        81 tAG~~~--~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivV  121 (145)
T d1hyea1          81 TSGVPR--KEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVI  121 (145)
T ss_dssp             CCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred             ECCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             535656--89987435542058999999988754599759998

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.17  E-value=1.6e-05  Score=44.71  Aligned_cols=112  Identities=16%  Similarity=0.067  Sum_probs=72.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHC-C-CCEEEEECCCCCCCHHHHHHHHCC---CCEEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf             87999756555779999999960-9-985999817888992345434159---965997555666345786789981688
Q 029656           33 MRILVTGGAGFIGSHLVDKLMEN-E-KNEVIVVDNYFTGSKDNLRKWIGH---PRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~-~-~~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~d~vi~~a~~  107 (190)
                      |||.|+|++|.+|..++..|... + ..++.+++... ...-...++.+.   .....+...-...+..+.|+||.++|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCC-CCHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCEEEECCCC
T ss_conf             9799995998499999999995789775788751555-026599998778220478689768975456778899988886


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--EEEEEEC
Q ss_conf             788521258056899877999999999987399--0999956
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~ii~~SS  147 (190)
                      ...  ..+.-.+.+..|......+.+.+.++..  .++.+|.
T Consensus        80 ~~k--~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN  119 (145)
T d2cmda1          80 RRK--PGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN  119 (145)
T ss_dssp             CCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf             678--8853325788789999999999986377868998369

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=98.06  E-value=2.4e-05  Score=43.85  Aligned_cols=114  Identities=16%  Similarity=0.115  Sum_probs=72.2

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC--C----CEEEEECCCCCCCH-HHHH-HHHCC--CCE-EEEECCCCCCCCCCCC
Q ss_conf             79879997565557799999999609--9----85999817888992-3454-34159--965-9975556663457867
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENE--K----NEVIVVDNYFTGSK-DNLR-KWIGH--PRF-ELIRHDVTEPLLIEVD   99 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~--~----~~v~~~~r~~~~~~-~~~~-~~~~~--~~~-~~~~~D~~~~~~~~~d   99 (190)
                      +..+|.|+||+|.||+.++-.|++..  |    -.+.+++....... +.+. ++.+.  ... .....+-...++.+.|
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD  102 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD  102 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCHHCCHHHHHCCCCCCCCCCCCCCCCCHHHCCCCC
T ss_conf             88679998998589999999997275248996479998537554221201121200033345467423441021216773


Q ss_pred             EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CC--EEEEEE
Q ss_conf             899816887885212580568998779999999999873-99--099995
Q 029656          100 QIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA--RILLTS  146 (190)
Q Consensus       100 ~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~--~ii~~S  146 (190)
                      +||-.+|...  ...+...+.+..|......+.+.+.++ +.  +++.++
T Consensus       103 vVvi~ag~~r--kpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~  150 (175)
T d7mdha1         103 WALLIGAKPR--GPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG  150 (175)
T ss_dssp             EEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             EEEEEECCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             5999523688--89976899999889999999999983089971899965

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.05  E-value=4.8e-05  Score=42.26  Aligned_cols=117  Identities=13%  Similarity=0.045  Sum_probs=74.2

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC-----CCCEEEEECCCCCCCCCCCCEEEE
Q ss_conf             027987999756555779999999960998599981788899234543415-----996599755566634578678998
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYH  103 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~d~vi~  103 (190)
                      +.+.+||.|.|+ |.+|..++..|...+-.++.++|.+.....-...++.+     .........+-.+.+..+.|+|+.
T Consensus         4 ~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvi   82 (154)
T d1pzga1           4 VQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIV   82 (154)
T ss_dssp             CSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEE
T ss_pred             CCCCCCEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCCEEEE
T ss_conf             457884899898-8889999999983798639999741662046999875011125874699526746666447876897


Q ss_pred             CCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHCCC-E-EEEEE
Q ss_conf             168878852---1258056899877999999999987399-0-99995
Q 029656          104 LACPASPIF---YKYNPVKTIKTNVIGTLNMLGLAKRVGA-R-ILLTS  146 (190)
Q Consensus       104 ~a~~~~~~~---~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~-ii~~S  146 (190)
                      ++|......   ......+.+..|......+++.+.+++. - ++.+|
T Consensus        83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs  130 (154)
T d1pzga1          83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT  130 (154)
T ss_dssp             CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             515446889887663212566666889999999987348981899967

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.01  E-value=5.3e-05  Score=42.02  Aligned_cols=111  Identities=15%  Similarity=0.202  Sum_probs=74.1

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHH---C--CCCEEEEECCCCCCCCCCCCEEEEC
Q ss_conf             798799975655577999999996099-859998178889923454341---5--9965997555666345786789981
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWI---G--HPRFELIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~---~--~~~~~~~~~D~~~~~~~~~d~vi~~  104 (190)
                      .++||.|.|+ |.+|..++..|+..+- .++.++|+......-...++.   .  ...+.....|.  .++.++|+++.+
T Consensus         5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~--~~l~daDvvvit   81 (148)
T d1ldna1           5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY--DDCRDADLVVIC   81 (148)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG--GGTTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHCCHHHCCCCCCCCEEEEECCH--HHHCCCEEEEEE
T ss_conf             9983999895-9889999999985698856999863254321310117427533689869987987--884225068776


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--EEEEEE
Q ss_conf             688788521258056899877999999999987399--099995
Q 029656          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~ii~~S  146 (190)
                      +|....  ..+...+.+..|......+.+.+.++..  .++.+|
T Consensus        82 ag~~~~--~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt  123 (148)
T d1ldna1          82 AGANQK--PGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT  123 (148)
T ss_dssp             CSCCCC--TTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             145555--676226778888999999999998429983499945

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.00  E-value=4.6e-05  Score=42.35  Aligned_cols=111  Identities=14%  Similarity=0.014  Sum_probs=72.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHHCCC---CEEEEECCCC-CCCCCCCCEEEECCCC
Q ss_conf             8799975655577999999996099-859998178889923454341599---6599755566-6345786789981688
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGHP---RFELIRHDVT-EPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~-~~~~~~~d~vi~~a~~  107 (190)
                      .||.|+||+|.+|..++..|..++- .++.++|....  .-...++....   ........-. .++..+.|+|+..+|.
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~--~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~   78 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT--PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV   78 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH--HHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCC--CHHHHHHHHHHHHCCCCEEECCCCHHHHHCCCCEEEECCCC
T ss_conf             9599999998599999999982896624899734455--12557775332004787398679868983799899987886


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--EEEEEEC
Q ss_conf             788521258056899877999999999987399--0999956
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~ii~~SS  147 (190)
                      ...  ..+...+.++.|......+++.+.+++.  .++.+|.
T Consensus        79 ~~~--~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN  118 (144)
T d1mlda1          79 PRK--PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN  118 (144)
T ss_dssp             CCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CCC--CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             778--8887206889999999999999874379728999469

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.92  E-value=0.00018  Score=39.26  Aligned_cols=110  Identities=14%  Similarity=0.047  Sum_probs=71.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHHC-----CCCEEEEECCCCCCCCCCCCEEEECCC
Q ss_conf             8799975655577999999996099-8599981788899234543415-----996599755566634578678998168
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~d~vi~~a~  106 (190)
                      |||.|+|+ |.+|..++..|+..+- .++.++|++..........+..     .........+. ..+..+.|+++.++|
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~-~~~~~dadvvvitag   78 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSND-YADTANSDIVIITAG   78 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESC-GGGGTTCSEEEECCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCHHCCCCEEEECCC-HHHHCCCEEEEEEEE
T ss_conf             97999996-9899999999984797736998426555311566653335522204664884687-888537707899986


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--EEEEEE
Q ss_conf             8788521258056899877999999999987399--099995
Q 029656          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~ii~~S  146 (190)
                      ....  ..+...+.+..|......+.+.+.++..  -++.+|
T Consensus        79 ~~~~--~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvt  118 (142)
T d1guza1          79 LPRK--PGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS  118 (142)
T ss_dssp             CCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred             CCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             3789--997327788787899999988864249971899925

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.89  E-value=0.0003  Score=38.07  Aligned_cols=109  Identities=17%  Similarity=0.160  Sum_probs=74.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHHCC----CCEEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf             8799975655577999999996099-85999817888992345434159----965997555666345786789981688
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIGH----PRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~d~vi~~a~~  107 (190)
                      +||.|.|+ |.+|..++..|+..+- .++.++|++.....-...++.+.    .......+|  ..+..+.|+|+.+||.
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~--~~~~~~adivvitag~   78 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD--YSDVKDCDVIVVTAGA   78 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C--GGGGTTCSEEEECCCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCEEEEECC--HHHHCCCCEEEEECCC
T ss_conf             84999897-98899999999866998879999566875540344644675567870475186--8984798569996045


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--EEEEEE
Q ss_conf             788521258056899877999999999987399--099995
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~ii~~S  146 (190)
                      ...  ..+...+.++.|......+++.+.++..  .++.+|
T Consensus        79 ~~~--~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt  117 (142)
T d1y6ja1          79 NRK--PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS  117 (142)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             567--676556776678899999998763249983499953

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=4.5e-05  Score=42.38  Aligned_cols=99  Identities=13%  Similarity=0.070  Sum_probs=55.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCC---CCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCC-CCCCCCCEEEECCCCC
Q ss_conf             879997565557799999999609---985999817888992345434159965997555666-3457867899816887
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENE---KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-PLLIEVDQIYHLACPA  108 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~---~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~d~vi~~a~~~  108 (190)
                      ++|-|.||||++|+.+++.|+++.   ..++....++...... .. .. .....  ..++.+ ..+.++|++|.+++. 
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~-~~-~~-~~~~~--~~~~~~~~~~~~~DivF~a~~~-   75 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA-PS-FG-GTTGT--LQDAFDLEALKALDIIVTCQGG-   75 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC-CG-GG-TCCCB--CEETTCHHHHHTCSEEEECSCH-
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC-CC-CC-CCCEE--EECCCCHHHHHCCCEEEEECCC-
T ss_conf             4899989854999999999994799880689995336556656-50-06-87134--3204563354157379993683-


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECCCC
Q ss_conf             8852125805689987799999999998739909999566021799
Q 029656          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDP  154 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~v~~~~  154 (190)
                                       .....+...+.+.+.+.++++.++.|...
T Consensus        76 -----------------~~s~~~~~~~~~~g~~~~VID~Ss~fR~~  104 (146)
T d1t4ba1          76 -----------------DYTNEIYPKLRESGWQGYWIDAASSLRMK  104 (146)
T ss_dssp             -----------------HHHHHHHHHHHHTTCCCEEEECSSTTTTC
T ss_pred             -----------------HHHHHHHHHHHHCCCCEECCCCCCCCCCC
T ss_conf             -----------------07778639998659975623687422268

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.83  E-value=0.00022  Score=38.73  Aligned_cols=109  Identities=15%  Similarity=0.112  Sum_probs=71.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHHC----CCCEEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf             8799975655577999999996099-8599981788899234543415----9965997555666345786789981688
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~d~vi~~a~~  107 (190)
                      ||+.|.|+ |.+|..++..|+.++- .++.++|++.....-...++..    .........|  ..+..+.|+|+.++|.
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~--~~~~~~adivvitag~   77 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD--YADLKGSDVVIVAAGV   77 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC--GGGGTTCSEEEECCCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCCCCC--HHHHCCCCEEEEECCC
T ss_conf             97999896-98899999999857998779999545443410220010246604566212770--8874579889984245


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--EEEEEE
Q ss_conf             788521258056899877999999999987399--099995
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~ii~~S  146 (190)
                      ...  ..+...+.+..|......+.+.+.+...  .++.+|
T Consensus        78 ~~~--~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt  116 (140)
T d1a5za1          78 PQK--PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT  116 (140)
T ss_dssp             CCC--SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCC--CCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             668--996355563256016788999997319981799947

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.83  E-value=0.00013  Score=40.04  Aligned_cols=111  Identities=14%  Similarity=0.091  Sum_probs=73.9

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHHC-----CCCEEEEECCCCCCCCCCCCEEEEC
Q ss_conf             798799975655577999999996099-8599981788899234543415-----9965997555666345786789981
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~d~vi~~  104 (190)
                      +..||.|.|+ |.+|..++..|..++- .++.++|++.+...-...++.+     .........|  ..+..+.|+|+..
T Consensus        19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d--~~~~~~adiVVit   95 (160)
T d1i0za1          19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD--YSVTANSKIVVVT   95 (160)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS--GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCEEEECCC--HHHCCCCCEEEEE
T ss_conf             9980899897-989999999998559775799987435155778998863562368985981465--4431335579984


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--EEEEEE
Q ss_conf             688788521258056899877999999999987399--099995
Q 029656          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~ii~~S  146 (190)
                      ||....  ..+...+.++.|......++..+++.+.  -++.+|
T Consensus        96 Ag~~~~--~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt  137 (160)
T d1i0za1          96 AGVRQQ--EGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS  137 (160)
T ss_dssp             CSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             477655--675268999988999999999998607896899948

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.82  E-value=0.00017  Score=39.42  Aligned_cols=110  Identities=16%  Similarity=0.060  Sum_probs=71.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHH---C-C-CCEEEE-ECCCCCCCCCCCCEEEECC
Q ss_conf             8799975655577999999996099-859998178889923454341---5-9-965997-5556663457867899816
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWI---G-H-PRFELI-RHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~---~-~-~~~~~~-~~D~~~~~~~~~d~vi~~a  105 (190)
                      |||.|.|+ |.+|..++..|+.++- .++.++|++.+...-...++.   . . ...... ..|.  ++..+.|+|+-.+
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~--~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY--SLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG--GGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH--HHHCCCCEEEEEC
T ss_conf             97999896-88899999999954857318998512540167898886114456887743358878--8853056788861


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEEC
Q ss_conf             88788521258056899877999999999987399-0999956
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTST  147 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~SS  147 (190)
                      |....  ......+.+..|......+.+.+.+++. -++++-|
T Consensus        78 g~~~~--~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt  118 (142)
T d1ojua1          78 GLARK--PGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (142)
T ss_dssp             CCCCC--SSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             45689--998617888876689999999999669982899966

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.81  E-value=5.2e-05  Score=42.10  Aligned_cols=112  Identities=15%  Similarity=0.149  Sum_probs=68.4

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCC---E---EEEECCCCCCCHHHHHH----HHC--CCCEEEEE-CCCCCCCCCC
Q ss_conf             7987999756555779999999960998---5---99981788899234543----415--99659975-5566634578
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKN---E---VIVVDNYFTGSKDNLRK----WIG--HPRFELIR-HDVTEPLLIE   97 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~---~---v~~~~r~~~~~~~~~~~----~~~--~~~~~~~~-~D~~~~~~~~   97 (190)
                      +.++|.|+||+|.+|+.++..|....-.   .   ..+++.  .........    +..  ........ .+-...++.+
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEI--PQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD   80 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECC--GGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCC--CCCHHHHCCCHHHHHCCCCCCCCCCCCCCCHHHHCCC
T ss_conf             99889998999779999999998464136654103767505--3305667175465413554445665467750210353


Q ss_pred             CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CC--EEEEEE
Q ss_conf             67899816887885212580568998779999999999873-99--099995
Q 029656           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA--RILLTS  146 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~--~ii~~S  146 (190)
                      .|++|.++|...  ...+...+.+..|......+.+.+.++ +.  .++.+|
T Consensus        81 advViitaG~~~--~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs  130 (154)
T d1y7ta1          81 ADYALLVGAAPR--KAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG  130 (154)
T ss_dssp             CSEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             CCEEEEECCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             357876057678--99985789999989999999999997589980899946

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.80  E-value=0.00016  Score=39.46  Aligned_cols=100  Identities=13%  Similarity=0.144  Sum_probs=55.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEE-CCCCC----CCH-HHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECC
Q ss_conf             98799975655577999999996099859998-17888----992-3454341599659975556663457867899816
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFT----GSK-DNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~-~r~~~----~~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      +++|.|.||+|++|+.+++.|.++...++..+ .+...    +.. ...+.+...........+..+....++|++|.+.
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~al   80 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLAT   80 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEECCC
T ss_conf             93899989643899999999982899745766700112322333223466333434544211104554312221221145


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCE
Q ss_conf             88788521258056899877999999999987399099995660
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~  149 (190)
                      ...                  ....+.......+.++|-.|+..
T Consensus        81 p~~------------------~s~~~~~~~~~~~~~vIDlSadf  106 (179)
T d2g17a1          81 AHE------------------VSHDLAPQFLQAGCVVFDLSGAF  106 (179)
T ss_dssp             CHH------------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred             CCH------------------HHHHHHHHHHHCCCEEECCCCCC
T ss_conf             505------------------57887435540582241154210

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.80  E-value=0.00021  Score=38.93  Aligned_cols=110  Identities=14%  Similarity=-0.001  Sum_probs=73.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCCCC--CHHHHHHHH----CCCCEEEEECCCCCCCCCCCCEEEECC
Q ss_conf             8799975655577999999996099-859998178889--923454341----599659975556663457867899816
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTG--SKDNLRKWI----GHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~--~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      .||.|+|++|.+|..++..|..++- .++.++|.....  ..-...++.    -.........|.  .+..+.|+|+..|
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~--~~~~~aDiVvita   78 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY--EDTAGSDVVVITA   78 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG--GGGTTCSEEEECC
T ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEECCHHHCCCCCCCCEEEECCH--HHHHHCCEEEEEC
T ss_conf             96999979981899999999837988789999467860346354213320444368856864877--7741347899962


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--EEEEEE
Q ss_conf             88788521258056899877999999999987399--099995
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~ii~~S  146 (190)
                      |...  ...+...+.++.|......+.+.+++++.  .++.++
T Consensus        79 G~~~--~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt  119 (142)
T d1o6za1          79 GIPR--QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS  119 (142)
T ss_dssp             CCCC--CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred             CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             2544--5697444677788999999998887349984599935

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.79  E-value=0.0002  Score=38.96  Aligned_cols=109  Identities=16%  Similarity=0.142  Sum_probs=70.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCC-----CCEEEE-ECCCCCCCCCCCCEEEECCC
Q ss_conf             879997565557799999999609985999817888992345434159-----965997-55566634578678998168
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH-----PRFELI-RHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~-----~~~~~~-~~D~~~~~~~~~d~vi~~a~  106 (190)
                      +||.|.|+ |.+|..++..|...+-.++.+++.+.........++...     ...... ..|.  .+..+.|++|-+||
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~--~~~~~advvvitag   78 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY--ADTANSDVIVVTSG   78 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG--GGGTTCSEEEECCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHCCCCCCCCCCEEEECCCH--HHHCCCCEEEEEEE
T ss_conf             86999897-9899999999984783508988502663036998763533326887779815867--88637877999501


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--EEEEEE
Q ss_conf             8788521258056899877999999999987399--099995
Q 029656          107 PASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       107 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~ii~~S  146 (190)
                      ....  ..+...+.+..|......++....+++.  .++.+|
T Consensus        79 ~~~~--~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt  118 (142)
T d1uxja1          79 APRK--PGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN  118 (142)
T ss_dssp             CC-----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred             CCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             3677--674126777678999999999871448994499957

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=5e-05  Score=42.18  Aligned_cols=112  Identities=13%  Similarity=0.079  Sum_probs=71.3

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHHC-----CCCEEEEECCCCCCCCCCCCEEEEC
Q ss_conf             798799975655577999999996099-8599981788899234543415-----9965997555666345786789981
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~d~vi~~  104 (190)
                      +..||.|.| .|.+|..++..|...+- .++.++|++.....-...++.+     .........|  ..+..+.|+|+..
T Consensus        18 ~~~KI~IIG-aG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d--~~~~~~adivvit   94 (159)
T d2ldxa1          18 SRCKITVVG-VGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD--YNVSANSKLVIIT   94 (159)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS--GGGGTTEEEEEEC
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCHHHHHCCCHHCCCCEEEECCC--HHHHCCCCEEEEE
T ss_conf             888399989-8989999999999558998799993784165415998857102148871784430--6542554289996


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--EEEEEEC
Q ss_conf             688788521258056899877999999999987399--0999956
Q 029656          105 ACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTST  147 (190)
Q Consensus       105 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~ii~~SS  147 (190)
                      ||.....  .+...+.++.|......+...+++.+.  .++.+|-
T Consensus        95 ag~~~~~--~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          95 AGARMVS--GQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             CSCCCCT--TTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             CCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             0366689--988889988899999999998745499869999479

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.70  E-value=3.9e-05  Score=42.72  Aligned_cols=67  Identities=22%  Similarity=0.307  Sum_probs=49.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC------CCCEEEECC
Q ss_conf             8799975655577999999996099859998178889923454341599659975556663457------867899816
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI------EVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~------~~d~vi~~a  105 (190)
                      |+|+|.| .|.+|+.+++.|.+. |+.|.+++++.    +.+..+.......++.+|..+....      +.+.++.+.
T Consensus         1 M~IvI~G-~G~~G~~la~~L~~~-g~~v~vid~d~----~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t   73 (132)
T d1lssa_           1 MYIIIAG-IGRVGYTLAKSLSEK-GHDIVLIDIDK----DICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT   73 (132)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCH----HHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHC-CCCCCEECCCH----HHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHCCCC
T ss_conf             9899989-889999999999977-99720021784----6502101110034314744311656650724543222467

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=97.69  E-value=0.00032  Score=37.91  Aligned_cols=110  Identities=15%  Similarity=0.135  Sum_probs=71.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCCCCCHHHHHHHHC----CCCEEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf             8799975655577999999996099-8599981788899234543415----9965997555666345786789981688
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFTGSKDNLRKWIG----HPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~d~vi~~a~~  107 (190)
                      .||.|.|+ |.+|..++..|+.++- .++.++|++.....-...++.+    .........+-. .+..+.|+|+..+|.
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~   79 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGP   79 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHCCCCCCCCEEECCCCH-HHHHCCCEEEEECCC
T ss_conf             78999897-9889999999984487858999973155310477777742233898515447898-895177489996336


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC--EEEEEE
Q ss_conf             788521258056899877999999999987399--099995
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~ii~~S  146 (190)
                      ...  ..+...+.+..|......+...+++++.  -++.+|
T Consensus        80 ~~~--~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt  118 (143)
T d1llda1          80 RQK--PGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT  118 (143)
T ss_dssp             CCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             568--898525664214899999999987419980899948

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.68  E-value=1.3e-05  Score=45.25  Aligned_cols=42  Identities=24%  Similarity=0.356  Sum_probs=34.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
Q ss_conf             8799975655577999999996099859998178889923454
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR   75 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~   75 (190)
                      |||.|+||+|.+|+.+++.|++. |++|.+.+|+.++.+....
T Consensus         1 Mki~vigGaG~iG~alA~~la~~-G~~V~l~~R~~e~~~~l~~   42 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATL-GHEIVVGSRREEKAEAKAA   42 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT-TCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH
T ss_conf             97999948839999999999987-9989999799999999999

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.55  E-value=0.00021  Score=38.92  Aligned_cols=111  Identities=17%  Similarity=0.159  Sum_probs=67.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC----C--EEEEECCCCCCCHHHHHHH----H--CCCCE-EEEECCCCCCCCCCC
Q ss_conf             98799975655577999999996099----8--5999817888992345434----1--59965-997555666345786
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEK----N--EVIVVDNYFTGSKDNLRKW----I--GHPRF-ELIRHDVTEPLLIEV   98 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~----~--~v~~~~r~~~~~~~~~~~~----~--~~~~~-~~~~~D~~~~~~~~~   98 (190)
                      -++|.|+||+|.+|++++-.|+..+-    .  .+.+.+....  ......+    .  ..... .....+-...+..+.
T Consensus         3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (154)
T d5mdha1           3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPM--MGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDL   80 (154)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGG--HHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTC
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCC--HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             6299998999779999999999777617998518999537542--34552032451104545656654576521235785


Q ss_pred             CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC-CC--EEEEEE
Q ss_conf             7899816887885212580568998779999999999873-99--099995
Q 029656           99 DQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRV-GA--RILLTS  146 (190)
Q Consensus        99 d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~--~ii~~S  146 (190)
                      |+||-++|....  ..+..++.+..|......+.+.+.++ +.  .++.+|
T Consensus        81 dvVVitag~~~~--~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs  129 (154)
T d5mdha1          81 DVAILVGSMPRR--DGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG  129 (154)
T ss_dssp             SEEEECCSCCCC--TTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             EEEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             199982566789--9986268998728999999899870199763899926

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.52  E-value=0.0012  Score=34.86  Aligned_cols=113  Identities=14%  Similarity=0.134  Sum_probs=71.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHC-----CCCEEEEECCCCCCCCCCCCEEEECCC
Q ss_conf             987999756555779999999960998599981788899234543415-----996599755566634578678998168
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIG-----HPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~d~vi~~a~  106 (190)
                      ..||.|.| .|.+|..++..|...+-.++.++|++.....-...++.+     .........+ ...+..+.|+++.+++
T Consensus         3 ~~KI~IIG-aG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~-~~~~~~~advvvitag   80 (150)
T d1t2da1           3 KAKIVLVG-SGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN-TYDDLAGADVVIVTAG   80 (150)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC-CGGGGTTCSEEEECCS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECCHHHHCCCCCCCCEEEECC-CCCCCCCCCEEEEECC
T ss_conf             87299989-898899999999818987699985037853262100330353258875898556-3001378767988623


Q ss_pred             CCCC-CCC--CCCCHHHHHHHHHHHHHHHHHHHHCCC-E-EEEEE
Q ss_conf             8788-521--258056899877999999999987399-0-99995
Q 029656          107 PASP-IFY--KYNPVKTIKTNVIGTLNMLGLAKRVGA-R-ILLTS  146 (190)
Q Consensus       107 ~~~~-~~~--~~~~~~~~~~n~~~~~~l~~~~~~~~~-~-ii~~S  146 (190)
                      .... ...  .......+..|......+.+.+++... - ++.+|
T Consensus        81 ~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt  125 (150)
T d1t2da1          81 FTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT  125 (150)
T ss_dssp             CSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             555789776653446787787899999999887229980799954

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.45  E-value=0.00058  Score=36.55  Aligned_cols=111  Identities=13%  Similarity=0.117  Sum_probs=69.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHH---C--CCCEEEEECCCCCCCCCCCCEEEECCC
Q ss_conf             879997565557799999999609-9859998178889923454341---5--996599755566634578678998168
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWI---G--HPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~~~~~~~~---~--~~~~~~~~~D~~~~~~~~~d~vi~~a~  106 (190)
                      +||.|.| .|++|..++..|+.++ ..++.++|++.........++.   .  .........|.  .+..+.|+||-+||
T Consensus         2 kKI~IIG-aG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~--~~l~~adiVVitaG   78 (146)
T d1hyha1           2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW--AALADADVVISTLG   78 (146)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG--GGGTTCSEEEECCS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEECCCH--HHHCCCCEEEEECC
T ss_conf             8699989-68889999999996588866999840454025678765314555478620431678--88556648998324


Q ss_pred             CCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCC-EEEEEE
Q ss_conf             878852--1258056899877999999999987399-099995
Q 029656          107 PASPIF--YKYNPVKTIKTNVIGTLNMLGLAKRVGA-RILLTS  146 (190)
Q Consensus       107 ~~~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~ii~~S  146 (190)
                      ......  ....-.+.+..|......+.+.++++.. -++.+-
T Consensus        79 ~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivv  121 (146)
T d1hyha1          79 NIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI  121 (146)
T ss_dssp             CGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEEC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             4555555677338899999999999999988613997289995

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00045  Score=37.13  Aligned_cols=90  Identities=20%  Similarity=0.210  Sum_probs=58.3

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCCC
Q ss_conf             27987999756555779999999960998599981788899234543415996599755566634578678998168878
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~~~~  109 (190)
                      .++++|+|.| -|-.|..+++.|.+. |++|++.|.+.......  .+  .....+......+....++|.+|-..|...
T Consensus         3 ~~~K~v~ViG-lG~sG~s~a~~L~~~-g~~v~~~D~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~d~vi~SPGi~~   76 (93)
T d2jfga1           3 YQGKNVVIIG-LGLTGLSCVDFFLAR-GVTPRVMDTRMTPPGLD--KL--PEAVERHTGSLNDEWLMAADLIVASPGIAL   76 (93)
T ss_dssp             CTTCCEEEEC-CSHHHHHHHHHHHHT-TCCCEEEESSSSCTTGG--GS--CTTSCEEESBCCHHHHHHCSEEEECTTSCT
T ss_pred             CCCCEEEEEE-ECHHHHHHHHHHHHC-CCEEEEEECCCCCHHHH--HH--HHCCCEEECCCCHHHHCCCCEEEECCCCCC
T ss_conf             6899999996-789999999999977-99899960876825578--98--406515525663432225878998898799


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             8521258056899877999999999987399099
Q 029656          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARIL  143 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii  143 (190)
                      .     .             .+++.+++.++.+|
T Consensus        77 ~-----~-------------~~~~~a~~~gi~ii   92 (93)
T d2jfga1          77 A-----H-------------PSLSAAADAGIEIV   92 (93)
T ss_dssp             T-----S-------------HHHHHHHHTTCEEE
T ss_pred             C-----C-------------HHHHHHHHCCCCEE
T ss_conf             9-----9-------------99999998699748

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00019  Score=39.15  Aligned_cols=76  Identities=17%  Similarity=0.240  Sum_probs=51.8

Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf             00279879997565557799999999609985999817888992345434159965997555666345786789981688
Q 029656           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        28 ~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~~  107 (190)
                      ...++++|+|.| +|+.+++++..|.+. +.++.++.|+.+........+.....+...  +..+.....+|.+||+...
T Consensus        14 ~~~~~k~vlIlG-aGGaarai~~al~~~-g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~--~~~~~~~~~~dliIN~Tp~   89 (170)
T d1nyta1          14 FIRPGLRILLIG-AGGASRGVLLPLLSL-DCAVTITNRTVSRAEELAKLFAHTGSIQAL--SMDELEGHEFDLIINATSS   89 (170)
T ss_dssp             CCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSHHHHHHHHHHTGGGSSEEEC--CSGGGTTCCCSEEEECCSC
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHCCC-CEEEEECCCHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCCCEEECCCCC
T ss_conf             997899899989-758989999986155-237973132177899999998640334222--2101223221445313456

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00014  Score=39.81  Aligned_cols=71  Identities=17%  Similarity=0.050  Sum_probs=43.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEE-EEECCCCCCCCCCCCEEEECCC
Q ss_conf             8799975655577999999996099859998178889923454341599659-9755566634578678998168
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFE-LIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~d~vi~~a~  106 (190)
                      |||.|.|+ |.+|..++..|.+. |+.|.+++|+.................. ....+. ......+|++|.+.-
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~-G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~iii~vk   72 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQ-GHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLK   72 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHT-TCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHCCCCCCCCCCCCCCCCCH-HHHHCCCCEEEEEEC
T ss_conf             98999995-89999999999987-99459997077885533045677522333233204-444235516999613

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.35  E-value=0.00098  Score=35.36  Aligned_cols=95  Identities=14%  Similarity=0.091  Sum_probs=65.4

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCC
Q ss_conf             02798799975655577999999996099859998178889923454341599659975556663457867899816887
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~~~  108 (190)
                      .+++++++|.| +|-+|...++.|++. |..|++++....   ..+..+....++.+......+.++.+.+.++.+.+. 
T Consensus         9 ~l~~k~vlVvG-~G~va~~ka~~ll~~-ga~v~v~~~~~~---~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d-   82 (113)
T d1pjqa1           9 QLRDRDCLIVG-GGDVAERKARLLLEA-GARLTVNALTFI---PQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDD-   82 (113)
T ss_dssp             CCBTCEEEEEC-CSHHHHHHHHHHHHT-TBEEEEEESSCC---HHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSC-
T ss_pred             EECCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECCCC---HHHHHHHHCCCCEEECCCCCHHHHCCCCEEEECCCC-
T ss_conf             81798799987-889999999999877-996999825577---678999865880544167787782787577016899-


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEE
Q ss_conf             88521258056899877999999999987399099995
Q 029656          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTS  146 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~S  146 (190)
                              .+.        ...+.+.|++.+ .+|++.
T Consensus        83 --------~~~--------n~~i~~~a~~~~-ilVNv~  103 (113)
T d1pjqa1          83 --------DTV--------NQRVSDAAESRR-IFCNVV  103 (113)
T ss_dssp             --------HHH--------HHHHHHHHHHTT-CEEEET
T ss_pred             --------HHH--------HHHHHHHHHHCC-CEEEEC
T ss_conf             --------899--------999999999869-989969

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.34  E-value=0.00019  Score=39.06  Aligned_cols=76  Identities=20%  Similarity=0.309  Sum_probs=51.0

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCCC
Q ss_conf             27987999756555779999999960998599981788899234543415996599755566634578678998168878
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~~~~  109 (190)
                      +.+++++|.|+ |.+|+.+++.|...+..++.+..|+.+........+    .......+-......++|+||.+.+...
T Consensus        22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~----~~~~~~~~~~~~~l~~~Divi~atss~~   96 (159)
T d1gpja2          22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL----GGEAVRFDELVDHLARSDVVVSATAAPH   96 (159)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH----TCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH----HCCCCCCHHHHHHHCCCCEEEEECCCCC
T ss_conf             01696999879-889999999999669857999758688999988864----1143451457877354899999248987


Q ss_pred             C
Q ss_conf             8
Q 029656          110 P  110 (190)
Q Consensus       110 ~  110 (190)
                      +
T Consensus        97 ~   97 (159)
T d1gpja2          97 P   97 (159)
T ss_dssp             C
T ss_pred             C
T ss_conf             6

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.32  E-value=0.00038  Score=37.53  Aligned_cols=76  Identities=14%  Similarity=0.281  Sum_probs=51.7

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCC
Q ss_conf             02798799975655577999999996099859998178889923454341599659975556663457867899816887
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~~~  108 (190)
                      ..++++++|.| +|+.++.++..|.+. +.++.++.|+.+........+.....+.....|  +.....+|.+||+....
T Consensus        15 ~~~~k~vlIlG-aGGaarai~~aL~~~-~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~--~~~~~~~diiIN~tp~g   90 (171)
T d1p77a1          15 LRPNQHVLILG-AGGATKGVLLPLLQA-QQNIVLANRTFSKTKELAERFQPYGNIQAVSMD--SIPLQTYDLVINATSAG   90 (171)
T ss_dssp             CCTTCEEEEEC-CSHHHHTTHHHHHHT-TCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG--GCCCSCCSEEEECCCC-
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHCCC-CCEEEECCCHHHHHHHHHHHHHHCCCCCHHHHC--CCCCCCCCEEEECCCCC
T ss_conf             87899799989-739999999987046-745652363378899999998533554201110--14322114454225666

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.26  E-value=0.00033  Score=37.85  Aligned_cols=98  Identities=14%  Similarity=0.185  Sum_probs=49.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC---CEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCCC
Q ss_conf             8799975655577999999996099---8599981788899234543415996599755566634578678998168878
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK---NEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~---~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~~~~  109 (190)
                      |+|-|.||+|++|+.+++.|+++..   .++..+..+...-.  ......  .............+.++|++|.+.... 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk--~~~~~~--~~~~~~~~~~~~~~~~~DvvF~alp~~-   75 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVP--APNFGK--DAGMLHDAFDIESLKQLDAVITCQGGS-   75 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSB--CCCSSS--CCCBCEETTCHHHHTTCSEEEECSCHH-
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC--CCCCCC--CCEEEECCCCHHHHCCCCEEEEECCCH-
T ss_conf             979999984599999999999568999468898214445662--323488--503432143155643665799806826-


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECC
Q ss_conf             8521258056899877999999999987399099995660217
Q 029656          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYG  152 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~v~~  152 (190)
                                       .+..+...+.+.+.+.+.++-++.|.
T Consensus        76 -----------------~s~~~~~~l~~~g~~~~VIDlSsdfR  101 (147)
T d1mb4a1          76 -----------------YTEKVYPALRQAGWKGYWIDAASTLR  101 (147)
T ss_dssp             -----------------HHHHHHHHHHHTTCCSEEEESSSTTT
T ss_pred             -----------------HHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             -----------------78897699997599569995885442

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.21  E-value=0.0015  Score=34.35  Aligned_cols=93  Identities=18%  Similarity=0.191  Sum_probs=52.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHC--CCCEEEEECCC-CCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCCC
Q ss_conf             87999756555779999999960--99859998178-8899234543415996599755566634578678998168878
Q 029656           33 MRILVTGGAGFIGSHLVDKLMEN--EKNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPAS  109 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~--~~~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~~~~  109 (190)
                      |+|-|.||+|++|+.+++.|.++  ...++..+..+ .....  +..    ..-.....++......++|++|.+++.. 
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~--i~~----~~~~~~~~~~~~~~~~~~d~vf~a~p~~-   75 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR--MGF----AESSLRVGDVDSFDFSSVGLAFFAAAAE-   75 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE--EEE----TTEEEECEEGGGCCGGGCSEEEECSCHH-
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCC--EEE----CCCCCHHCCCHHHHHCCCEEEEECCCCC-
T ss_conf             789998978799999999998659994699998603657863--230----4541000010045423323788337963-


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCE
Q ss_conf             8521258056899877999999999987399099995660
Q 029656          110 PIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       110 ~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~  149 (190)
                                       ........+.+.+.++|-.|+..
T Consensus        76 -----------------~s~~~~~~~~~~g~~VID~Ss~f   98 (144)
T d2hjsa1          76 -----------------VSRAHAERARAAGCSVIDLSGAL   98 (144)
T ss_dssp             -----------------HHHHHHHHHHHTTCEEEETTCTT
T ss_pred             -----------------HHHHHCCCCCCCCCEEEEECHHH
T ss_conf             -----------------12201320124783688643122

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.14  E-value=0.00072  Score=36.08  Aligned_cols=69  Identities=20%  Similarity=0.241  Sum_probs=42.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC-----CCCCCCEEEECC
Q ss_conf             98799975655577999999996099859998178889923454341599659975556663-----457867899816
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLA  105 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~d~vi~~a  105 (190)
                      .++|+|.| +|.+|+.+++.|.+. |+.|++++|+.+........   .........+....     .....|.++.+.
T Consensus         2 ~K~IliiG-aG~~G~~~a~~L~~~-g~~V~v~dr~~~~a~~l~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           2 TKSVLMLG-SGFVTRPTLDVLTDS-GIKVTVACRTLESAKKLSAG---VQHSTPISLDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHTT-TCEEEEEESCHHHHHHHHTT---CTTEEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHHHHCCCEEEEEC
T ss_conf             98799987-879999999999849-79799998974777999851---5542200012210243676641023147622

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.07  E-value=0.00019  Score=39.08  Aligned_cols=73  Identities=14%  Similarity=0.050  Sum_probs=46.6

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCC--CCCCCCCEEEECCC
Q ss_conf             279879997565557799999999609985999817888992345434159965997555666--34578678998168
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE--PLLIEVDQIYHLAC  106 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~d~vi~~a~  106 (190)
                      ..+.+|+|+|++|.+|...++.+... |.+|++++++....+ ...++. ...+ ....|..+  ....++|++|.+.|
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~-~~~~lG-a~~~-i~~~~~~~~~~~~~g~D~v~d~~G  100 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLA-LPLALG-AEEA-ATYAEVPERAKAWGGLDLVLEVRG  100 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSH-HHHHTT-CSEE-EEGGGHHHHHHHTTSEEEEEECSC
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHCCC-CCCCCCCCCCCCCCC-CCCCCC-CCEE-EEHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             99998999956643213322111123-333322335541111-112344-4022-220235555421355320114565

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.03  E-value=0.0041  Score=32.10  Aligned_cols=32  Identities=38%  Similarity=0.504  Sum_probs=29.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             8799975655577999999996099859998178
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      |+|.|.| .|++|..++..|+.. |++|+++|.+
T Consensus         1 MkI~ViG-lG~vGl~~a~~la~~-g~~V~g~D~n   32 (202)
T d1mv8a2           1 MRISIFG-LGYVGAVCAGCLSAR-GHEVIGVDVS   32 (202)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHT-TCEEEEECSC
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf             9899989-888499999999958-9938999698

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.99  E-value=0.0022  Score=33.57  Aligned_cols=100  Identities=15%  Similarity=0.082  Sum_probs=58.2

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEEC-CCCCC-------CCCCCCEE
Q ss_conf             27987999756555779999999960998599981788899234543415996599755-56663-------45786789
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVTEP-------LLIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-D~~~~-------~~~~~d~v  101 (190)
                      .+|.+|+|+||+|.+|...++..... |.+|+++.++.+. .+.+...   ..-..+.. |....       ...++|++
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~-~~~~~~~---Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v  102 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEK-IAYLKQI---GFDAAFNYKTVNSLEEALKKASPDGYDCY  102 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHH-HHHHHHT---TCSEEEETTSCSCHHHHHHHHCTTCEEEE
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHCC-CCEEEEECCCHHH-HHHHHHH---HHHHHCCCCCCCHHHHHHHHHHCCCCCEE
T ss_conf             99988999967884369999998706-9879996787789-9999752---00111023441178998877623897646


Q ss_pred             EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECCC
Q ss_conf             9816887885212580568998779999999999873990999956602179
Q 029656          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD  153 (190)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~v~~~  153 (190)
                      |++.|..           .+       ...++.++.. .+++.++....++.
T Consensus       103 ~D~vG~~-----------~~-------~~~~~~l~~~-G~~v~~G~~~~~~~  135 (182)
T d1v3va2         103 FDNVGGE-----------FL-------NTVLSQMKDF-GKIAICGAISVYNR  135 (182)
T ss_dssp             EESSCHH-----------HH-------HHHGGGEEEE-EEEEECCCGGGTTC
T ss_pred             EEECCCH-----------HH-------HHHHHHCCCC-CEEEEECCEEECCC
T ss_conf             8724722-----------44-------3113003589-86885052543254

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.92  E-value=0.0012  Score=34.88  Aligned_cols=74  Identities=19%  Similarity=0.295  Sum_probs=41.1

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCC-HHH-HHHHHCCCCEEEEECCCCCCCCCCCCEEEECCC
Q ss_conf             7987999756555779999999960998599981-788899-234-543415996599755566634578678998168
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD-NYFTGS-KDN-LRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~-r~~~~~-~~~-~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~  106 (190)
                      +..+|-|.||+|++|+.+++.|.++...++..+. ++..+. ... .+.+... .. ....+..+....++|++|.+..
T Consensus         4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~Dvvf~alp   80 (183)
T d2cvoa1           4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQ-DL-PNLVAVKDADFSNVDAVFCCLP   80 (183)
T ss_dssp             SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTS-CC-CCCBCGGGCCGGGCSEEEECCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCC-CC-CCCHHHHHHHHCCCCEEEECCC
T ss_conf             82079998966489999999998289946998742465897442356643333-21-1101466655034334665034

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.92  E-value=0.0023  Score=33.44  Aligned_cols=65  Identities=25%  Similarity=0.320  Sum_probs=41.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECC
Q ss_conf             8799975655577999999996099859998178889923454341599659975556663457867899816
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |+|.|.| .|.+|..+++.|.+. |++|++.+|+....+    .......+....-++  ....++|+||-+.
T Consensus         1 MkI~iIG-~G~mG~~lA~~l~~~-g~~V~~~d~~~~~~~----~a~~~~~~~~~~~~~--~~~~~~DiIilav   65 (165)
T d2f1ka2           1 MKIGVVG-LGLIGASLAGDLRRR-GHYLIGVSRQQSTCE----KAVERQLVDEAGQDL--SLLQTAKIIFLCT   65 (165)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHH----HHHHTTSCSEEESCG--GGGTTCSEEEECS
T ss_pred             CEEEEEE-ECHHHHHHHHHHHHC-CCEEEEEECCCHHHH----HHHHHHCCCEEEEEC--CCCCCCCCCCCCC
T ss_conf             9999991-049899999999978-998999989803779----999862243232210--1134554322467

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.91  E-value=0.0048  Score=31.74  Aligned_cols=94  Identities=16%  Similarity=0.230  Sum_probs=51.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC--CCEEEEECCC-CCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCC
Q ss_conf             9879997565557799999999609--9859998178-889923454341599659975556663457867899816887
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENE--KNEVIVVDNY-FTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~--~~~v~~~~r~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~~~  108 (190)
                      |-+|-|.||+|++|..+++.|.++.  ..++..+..+ .....  +..    ..-.....+..+....+.|.++.+++..
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~--~~~----~~~~~~~~~~~~~~~~~~d~~f~~~~~~   74 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKS--LKF----KDQDITIEETTETAFEGVDIALFSAGSS   74 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCE--EEE----TTEEEEEEECCTTTTTTCSEEEECSCHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC--CCC----CCCCCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf             9889998987599999999997199981589982355544655--311----5874312432045666666654156753


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCE
Q ss_conf             88521258056899877999999999987399099995660
Q 029656          109 SPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       109 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~  149 (190)
                                        .+..........+.++|=.|+..
T Consensus        75 ------------------~s~~~~~~~~~~~~~VIDlSsdf   97 (154)
T d2gz1a1          75 ------------------TSAKYAPYAVKAGVVVVDNTSYF   97 (154)
T ss_dssp             ------------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred             ------------------CHHHHHHHHCCCCCEEHHCCHHH
T ss_conf             ------------------02567765324441300057323

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.85  E-value=0.0014  Score=34.61  Aligned_cols=98  Identities=16%  Similarity=0.075  Sum_probs=57.5

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCC----CCCCCCCEEEECC
Q ss_conf             279879997565557799999999609985999817888992345434159965997555666----3457867899816
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE----PLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~----~~~~~~d~vi~~a  105 (190)
                      ..+.+|+|+||+|.+|...++..... |.+|++..+++.+. +.+..+. ...+.-...+..+    ....++|+||.+.
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~-~~~~~lG-a~~vi~~~~~~~~~~~~~~~~gvD~vid~v  106 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEH-DYLRVLG-AKEVLAREDVMAERIRPLDKQRWAAAVDPV  106 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCH-HHHHHTT-CSEEEECC---------CCSCCEEEEEECS
T ss_pred             CCCCEEEEEECCCHHHHHHHHHHHHC-CCCEEEECCCHHHH-HHHHHCC-CCEEEECCHHHHHHHHHHHCCCCCEEEECC
T ss_conf             99988999944314889999999981-99417851736789-9887204-540132403477788775215767899768


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCE
Q ss_conf             88788521258056899877999999999987399099995660
Q 029656          106 CPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~  149 (190)
                      |...       .           ...++.++. +.|++.++...
T Consensus       107 gg~~-------~-----------~~~l~~l~~-~Griv~~G~~~  131 (176)
T d1xa0a2         107 GGRT-------L-----------ATVLSRMRY-GGAVAVSGLTG  131 (176)
T ss_dssp             TTTT-------H-----------HHHHHTEEE-EEEEEECSCCS
T ss_pred             CCHH-------H-----------HHHHHHHCC-CCEEEEEECCC
T ss_conf             8512-------7-----------899998477-86278740256

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.0035  Score=32.44  Aligned_cols=72  Identities=14%  Similarity=0.146  Sum_probs=47.2

Q ss_pred             CCCCEEEEECC----------------CCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCC-
Q ss_conf             27987999756----------------5557799999999609985999817888992345434159965997555666-
Q 029656           30 QSNMRILVTGG----------------AGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE-   92 (190)
Q Consensus        30 ~~~~~vlItGa----------------~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~-   92 (190)
                      +.|++|+||+|                +|..|.+|++.+..+ |+.|.++.-......        ...+..+...-.+ 
T Consensus         4 l~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~-Ga~V~li~g~~~~~~--------p~~~~~~~~~t~~~   74 (223)
T d1u7za_           4 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARR-GANVTLVSGPVSLPT--------PPFVKRVDVMTALE   74 (223)
T ss_dssp             TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHT-TCEEEEEECSCCCCC--------CTTEEEEECCSHHH
T ss_pred             CCCCEEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHC-CCCHHHHHCCCCCCC--------CCCCCCCEEHHHHH
T ss_conf             579889997788755678823526279379999999999986-982432412344675--------43221000012688


Q ss_pred             ------CCCCCCCEEEECCCCCCC
Q ss_conf             ------345786789981688788
Q 029656           93 ------PLLIEVDQIYHLACPASP  110 (190)
Q Consensus        93 ------~~~~~~d~vi~~a~~~~~  110 (190)
                            ....+.|++|++|++...
T Consensus        75 m~~~~~~~~~~~D~~i~aAAvsDf   98 (223)
T d1u7za_          75 MEAAVNASVQQQNIFIGCAAVADY   98 (223)
T ss_dssp             HHHHHHHHGGGCSEEEECCBCCSE
T ss_pred             HHHHHHHHHCCCEEEEEEECHHHH
T ss_conf             999987531234157642010355

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.82  E-value=0.0017  Score=34.08  Aligned_cols=67  Identities=18%  Similarity=0.241  Sum_probs=48.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC------CCCEEEECCC
Q ss_conf             8799975655577999999996099859998178889923454341599659975556663457------8678998168
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI------EVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~------~~d~vi~~a~  106 (190)
                      |+++|.| .|.+|+.+++.|.+. |+.|.+++.+    .+....+. ......+.+|..+....      ++|.+|-+..
T Consensus         1 k~~iIiG-~G~~G~~la~~L~~~-g~~vvvid~d----~~~~~~~~-~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~   73 (134)
T d2hmva1           1 KQFAVIG-LGRFGGSIVKELHRM-GHEVLAVDIN----EEKVNAYA-SYATHAVIANATEENELLSLGIRNFEYVIVAIG   73 (134)
T ss_dssp             CCEEEEC-CSHHHHHHHHHHHHT-TCCCEEEESC----HHHHHHTT-TTCSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHC-CCEEEEECCC----HHHHHHHH-HHCCCCEEEECCCCHHHHCCCCCCCCEEEEECC
T ss_conf             9799989-889999999999987-9918994370----88889999-727742252032101342057735457889758

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.81  E-value=0.00073  Score=36.05  Aligned_cols=33  Identities=21%  Similarity=0.415  Sum_probs=26.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf             987999756555779999999960998599981
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVD   64 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~   64 (190)
                      +++|-|.||+|++|..+++.|.++...++..+.
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~   33 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLS   33 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             919999797758999999999819984699863

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.80  E-value=0.0036  Score=32.43  Aligned_cols=68  Identities=15%  Similarity=0.166  Sum_probs=43.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECC
Q ss_conf             879997565557799999999609-9859998178889923454341599659975556663457867899816
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~-~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      ++|.|.| .|.+|..+++.|.+.+ ..+|++.+++.+..    ........+....-+........+|.||.+.
T Consensus         2 k~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~dlIila~   70 (171)
T d2g5ca2           2 QNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESI----SKAVDLGIIDEGTTSIAKVEDFSPDFVMLSS   70 (171)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHH----HHHHHTTSCSEEESCGGGGGGTCCSEEEECS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEEECCHHHH----HHHHHHHCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             7899994-1989999999999639970899997986889----9999841122221002332101233233368

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.0031  Score=32.76  Aligned_cols=98  Identities=17%  Similarity=0.339  Sum_probs=55.1

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEE-EECCCCCCC-HHHHHHHHCCCCE-EEEECCCCCCCCCCCCEEEECCCC
Q ss_conf             7987999756555779999999960998599-981788899-2345434159965-997555666345786789981688
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVI-VVDNYFTGS-KDNLRKWIGHPRF-ELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~-~~~r~~~~~-~~~~~~~~~~~~~-~~~~~D~~~~~~~~~d~vi~~a~~  107 (190)
                      +.++|.|.|++|.+|+.+++.+.+..+.++. +++|..... .....++...... ..+..|+ +.....+|++|.+.- 
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~-~~~~~~~DViIDFs~-   80 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSL-DAVKDDFDVFIDFTR-   80 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCS-TTTTTSCSEEEECSC-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHCCCHHHHHHCCCCCCCEEECCH-HHHHCCCCEEEEECC-
T ss_conf             877899989988789999999985899789999831441210630666504566783230568-887415656999445-


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             7885212580568998779999999999873990999956
Q 029656          108 ASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus       108 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS  147 (190)
                               +        .++...++.|.+.++.+|.=+|
T Consensus        81 ---------p--------~~~~~~~~~a~~~~~~~ViGTT  103 (162)
T d1diha1          81 ---------P--------EGTLNHLAFCRQHGKGMVIGTT  103 (162)
T ss_dssp             ---------H--------HHHHHHHHHHHHTTCEEEECCC
T ss_pred             ---------H--------HHHHHHHHHHHHCCCEEEEECC
T ss_conf             ---------8--------8889999999735630698237

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.0045  Score=31.88  Aligned_cols=79  Identities=11%  Similarity=0.032  Sum_probs=51.1

Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH---HHHCCCCEEEEECCCCCCC-----CCCCC
Q ss_conf             002798799975655577999999996099859998178889923454---3415996599755566634-----57867
Q 029656           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR---KWIGHPRFELIRHDVTEPL-----LIEVD   99 (190)
Q Consensus        28 ~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~---~~~~~~~~~~~~~D~~~~~-----~~~~d   99 (190)
                      ...++++++|.| +|+.|++++..|...+...++++.|+.+.......   .+...........+..+..     ...+|
T Consensus        14 ~~l~~k~vlIlG-aGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          14 FDIKGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             CCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHCCCC
T ss_conf             896799899989-7489999999986448736764233067799999999998762476347652010000354304331


Q ss_pred             EEEECCCC
Q ss_conf             89981688
Q 029656          100 QIYHLACP  107 (190)
Q Consensus       100 ~vi~~a~~  107 (190)
                      +|||+...
T Consensus        93 iiIN~Tp~  100 (182)
T d1vi2a1          93 ILTNGTKV  100 (182)
T ss_dssp             EEEECSST
T ss_pred             EECCCCCC
T ss_conf             00245677

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.62  E-value=0.0056  Score=31.40  Aligned_cols=72  Identities=11%  Similarity=0.033  Sum_probs=45.6

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCC---C-----CCCCCCEE
Q ss_conf             279879997565557799999999609985999817888992345434159965997555666---3-----45786789
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE---P-----LLIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~---~-----~~~~~d~v  101 (190)
                      ..+.+|+|+||+|.+|...++.+... |..++++.++.++ .+.+...   ..-..+...-.+   .     ...++|++
T Consensus        24 ~~g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~-~~~l~~~---Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v   98 (183)
T d1pqwa_          24 SPGERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAK-REMLSRL---GVEYVGDSRSVDFADEILELTDGYGVDVV   98 (183)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHH-HHHHHTT---CCSEEEETTCSTHHHHHHHHTTTCCEEEE
T ss_pred             CCCCEEEEECCCCCCCCCCCHHHCCC-CCCCEEEECCCCC-CCCCCCC---CCCCCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf             99899999889888642230120112-2322011014421-0001222---33212457755799999998389977999


Q ss_pred             EECCC
Q ss_conf             98168
Q 029656          102 YHLAC  106 (190)
Q Consensus       102 i~~a~  106 (190)
                      |.+.|
T Consensus        99 ~d~~g  103 (183)
T d1pqwa_          99 LNSLA  103 (183)
T ss_dssp             EECCC
T ss_pred             EECCC
T ss_conf             95355

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=96.62  E-value=0.0027  Score=33.07  Aligned_cols=72  Identities=19%  Similarity=0.196  Sum_probs=46.0

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC-----CCCCCCEEEECC
Q ss_conf             798799975655577999999996099859998178889923454341599659975556663-----457867899816
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-----LLIEVDQIYHLA  105 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~d~vi~~a  105 (190)
                      .+.+|+|+||+|.+|...++..... |++|+...++.++. +.+..+. ...+ ...-|....     ...++|.+|.+.
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~-~~~~~lG-ad~v-i~~~~~~~~~~~~~~~~gvd~vid~v   98 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAA-DYLKQLG-ASEV-ISREDVYDGTLKALSKQQWQGAVDPV   98 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTH-HHHHHHT-CSEE-EEHHHHCSSCCCSSCCCCEEEEEESC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCCEEEEECCHHHH-HHHHHHC-CCCE-EECCCHHCHHHHCCCCCCCEEEEECC
T ss_conf             9998999678655889999999876-99659871677889-9998423-6403-74411000021012699754899547


Q ss_pred             C
Q ss_conf             8
Q 029656          106 C  106 (190)
Q Consensus       106 ~  106 (190)
                      +
T Consensus        99 g   99 (167)
T d1tt7a2          99 G   99 (167)
T ss_dssp             C
T ss_pred             C
T ss_conf             4

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.47  E-value=0.0019  Score=33.86  Aligned_cols=41  Identities=17%  Similarity=0.265  Sum_probs=34.8

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf             798799975655577999999996099859998178889923
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD   72 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~   72 (190)
                      ..++|.|.|+.|.+|+.+++.|.+. |++|.+.+|+......
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~-G~~V~~~d~~~~~~~~   48 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRAS-GYPISILDREDWAVAE   48 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTT-TCCEEEECTTCGGGHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCCCEECCCCCCCCCC
T ss_conf             8886999968897899999999976-9973851331021200

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0075  Score=30.72  Aligned_cols=94  Identities=15%  Similarity=0.184  Sum_probs=53.9

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEEC---CCCCC-----CCCCCCEE
Q ss_conf             27987999756555779999999960998599981788899234543415996599755---56663-----45786789
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH---DVTEP-----LLIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~---D~~~~-----~~~~~d~v  101 (190)
                      ..+.+|+|+|++|.+|...++.+... |.+++++.+++.+ .+.+.++ +..  .++..   |..+.     ...++|++
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~-~~~~~~~-Ga~--~vi~~~~~~~~~~i~~~t~~~g~d~v  101 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEG-QKIVLQN-GAH--EVFNHREVNYIDKIKKYVGEKGIDII  101 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHH-HHHHHHT-TCS--EEEETTSTTHHHHHHHHHCTTCEEEE
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCC-CCCCCCC-CCC--CCCCCCCCCHHHHHHHHHCCCCCEEE
T ss_conf             99998999844655421232110036-8610024322111-2220126-863--32233343478775543225773588


Q ss_pred             EECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             9816887885212580568998779999999999873990999956
Q 029656          102 YHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus       102 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS  147 (190)
                      |.+.+.           ..       ....++.+++. .+++.++.
T Consensus       102 ~d~~g~-----------~~-------~~~~~~~l~~~-G~iv~~G~  128 (174)
T d1yb5a2         102 IEMLAN-----------VN-------LSKDLSLLSHG-GRVIVVGS  128 (174)
T ss_dssp             EESCHH-----------HH-------HHHHHHHEEEE-EEEEECCC
T ss_pred             EECCCH-----------HH-------HHHHHHCCCCC-CEEEEEEC
T ss_conf             612547-----------78-------99987523899-88999805

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.40  E-value=0.012  Score=29.57  Aligned_cols=72  Identities=21%  Similarity=0.303  Sum_probs=47.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEE-CCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf             8799975655577999999996099859998-178889923454341599659975556663457867899816887885
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI  111 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~~~~~~  111 (190)
                      |++.|.|++|..|+.+.+.+.+. ++++... +++                        ....+.++|++|.+..+.   
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~-~~~l~~~id~~------------------------~~~~~~~~DVvIDFS~p~---   52 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEK-GHELVLKVDVN------------------------GVEELDSPDVVIDFSSPE---   52 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT-TCEEEEEEETT------------------------EEEECSCCSEEEECSCGG---
T ss_pred             CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEECCC------------------------CHHHHCCCCEEEEECCHH---
T ss_conf             98999888887789999999669-99599997788------------------------578845599999926889---


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             212580568998779999999999873990999956
Q 029656          112 FYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus       112 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS  147 (190)
                             .        +...++.|.++++.+|.=+|
T Consensus        53 -------~--------~~~~l~~~~~~~~p~ViGTT   73 (128)
T d1vm6a3          53 -------A--------LPKTVDLCKKYRAGLVLGTT   73 (128)
T ss_dssp             -------G--------HHHHHHHHHHHTCEEEECCC
T ss_pred             -------H--------HHHHHHHHHHCCCCEEEECC
T ss_conf             -------9--------99999998745997799717

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.40  E-value=0.0073  Score=30.79  Aligned_cols=65  Identities=12%  Similarity=0.155  Sum_probs=42.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECC
Q ss_conf             8799975655577999999996099859998178889923454341599659975556663457867899816
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |+|.+.| .|.+|.++++.|++.+++++.+.+|+.+..    ..+.....+... .|.  .+..++|+||-+.
T Consensus         1 MkI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~----~~l~~~~~~~~~-~~~--~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRGAEKR----ERLEKELGVETS-ATL--PELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSSHHHH----HHHHHHTCCEEE-SSC--CCCCTTSEEEECS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEECCHHHH----HHHHHHCCCCCC-CCC--CCCCCCCEEEEEC
T ss_conf             9899996-749999999999978997589994881677----776542112234-311--1113555089945

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.34  E-value=0.0074  Score=30.77  Aligned_cols=68  Identities=13%  Similarity=0.230  Sum_probs=44.4

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf             79879997565557799999999609985999817888992345434159965997555666345786789981688
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~~  107 (190)
                      ++++|+|.| +|+.+++++..|.+.+-.++.++.|+.+... .+....+   ...+    ......++|+|||+...
T Consensus        16 ~~~~vlIlG-aGGaarai~~aL~~~g~~~I~I~nR~~~ka~-~L~~~~~---~~~~----~~~~~~~~DliINaTpi   83 (167)
T d1npya1          16 KNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVKTGQ-YLAALYG---YAYI----NSLENQQADILVNVTSI   83 (167)
T ss_dssp             TTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHHHHH-HHHHHHT---CEEE----SCCTTCCCSEEEECSST
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCCHHHHH-HHHHHHH---HHHH----HCCCCCCHHHHEECCCC
T ss_conf             899699989-8789999999999779988999633278888-7887643---2232----20222210220110335

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.0072  Score=30.81  Aligned_cols=72  Identities=15%  Similarity=0.035  Sum_probs=47.0

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEEC---CCCCC-----CCCCCCEE
Q ss_conf             27987999756555779999999960998599981788899234543415996599755---56663-----45786789
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH---DVTEP-----LLIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~---D~~~~-----~~~~~d~v  101 (190)
                      ..+.+|+|+||+|.+|...++..... |.+|++++++..+.+ .+.++. ..  +.+..   |+.+.     ...++|++
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~-~~~~lG-a~--~vi~~~~~d~~~~v~~~t~g~g~d~v  101 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQ-SALKAG-AW--QVINYREEDLVERLKEITGGKKVRVV  101 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHH-HHHHHT-CS--EEEETTTSCHHHHHHHHTTTCCEEEE
T ss_pred             CCCCEEEEECCCCCCCHHHHHHHHHH-CCEEEECCCCHHHHH-HHHHCC-CE--EEEECCCCCHHHHHHHHHCCCCEEEE
T ss_conf             99998999805543206899999882-984753132037888-887039-72--99989998899999998589970999


Q ss_pred             EECCC
Q ss_conf             98168
Q 029656          102 YHLAC  106 (190)
Q Consensus       102 i~~a~  106 (190)
                      +.+.+
T Consensus       102 ~d~~g  106 (179)
T d1qora2         102 YDSVG  106 (179)
T ss_dssp             EECSC
T ss_pred             EECCC
T ss_conf             96764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.28  E-value=0.02  Score=28.48  Aligned_cols=73  Identities=12%  Similarity=0.068  Sum_probs=47.8

Q ss_pred             CCCCCEEEEECCCCHHH-HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf             02798799975655577-99999999609985999817888992345434159965997555666345786789981688
Q 029656           29 FQSNMRILVTGGAGFIG-SHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG-~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~~  107 (190)
                      +...+++.+.| -|++| ..|++.|.++ |+.|...|+........+.+    ..+.+..++-.+ ...+.|.||...+.
T Consensus         5 ~~~~~~ihfiG-igG~GMs~LA~~L~~~-G~~VsGSD~~~~~~~~~L~~----~Gi~v~~g~~~~-~i~~~d~vV~S~AI   77 (96)
T d1p3da1           5 MRRVQQIHFIG-IGGAGMSGIAEILLNE-GYQISGSDIADGVVTQRLAQ----AGAKIYIGHAEE-HIEGASVVVVSSAI   77 (96)
T ss_dssp             CTTCCEEEEET-TTSTTHHHHHHHHHHH-TCEEEEEESCCSHHHHHHHH----TTCEEEESCCGG-GGTTCSEEEECTTS
T ss_pred             CHHCCEEEEEE-ECHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHH----CCCEEEECCCCC-CCCCCCEEEECCCC
T ss_conf             20077799998-7799999999999848-97799970887801268997----798577787434-57899899988872


Q ss_pred             C
Q ss_conf             7
Q 029656          108 A  108 (190)
Q Consensus       108 ~  108 (190)
                      .
T Consensus        78 ~   78 (96)
T d1p3da1          78 K   78 (96)
T ss_dssp             C
T ss_pred             C
T ss_conf             9

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.011  Score=29.81  Aligned_cols=106  Identities=9%  Similarity=0.127  Sum_probs=63.0

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH----------------------HHHHHCCCCEEEEE
Q ss_conf             27987999756555779999999960998599981788899234----------------------54341599659975
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN----------------------LRKWIGHPRFELIR   87 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~----------------------~~~~~~~~~~~~~~   87 (190)
                      +...+|+|.| .|.+|..+++.|...|-..++++|...-...+.                      +.++.+...+..+.
T Consensus        23 L~~s~VlvvG-~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~  101 (529)
T d1yova1          23 LESAHVCLIN-ATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVE  101 (529)
T ss_dssp             HHHCEEEECC-CSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEES
T ss_pred             HHCCCEEEEC-CCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHCCCHHCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             9579889988-888999999999982698899985996896665820157945578799999999999868999579973


Q ss_pred             CCCCC------CCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECCC
Q ss_conf             55666------3457867899816887885212580568998779999999999873990999956602179
Q 029656           88 HDVTE------PLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGD  153 (190)
Q Consensus        88 ~D~~~------~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~v~~~  153 (190)
                      .+..+      .-..++|+||.+..         +        ......+-+.|++.++.+|.+++.+.+|.
T Consensus       102 ~~~~~~~~~~~~~~~~~dvVv~~~~---------~--------~~~~~~l~~~c~~~~ip~i~~~~~G~~G~  156 (529)
T d1yova1         102 ESPENLLDNDPSFFCRFTVVVATQL---------P--------ESTSLRLADVLWNSQIPLLICRTYGLVGY  156 (529)
T ss_dssp             SCHHHHHHSCGGGGGGCSEEEEESC---------C--------HHHHHHHHHHHHHHTCCEEEEEEETTEEE
T ss_pred             CCCHHHHHHHHHHHCCCCEEEECCC---------C--------HHHHHHHHHHHHHCCCCEEEEECCCCEEE
T ss_conf             7701344437988568999998999---------9--------99999999999982999999953688799

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0042  Score=32.07  Aligned_cols=74  Identities=12%  Similarity=0.068  Sum_probs=45.9

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCC---CCCCCCCCCEEEECC
Q ss_conf             02798799975655577999999996099859998178889923454341599659975556---663457867899816
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV---TEPLLIEVDQIYHLA  105 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~d~vi~~a  105 (190)
                      ...+.+|+|.|+ |.+|...++.+... |+.+++++++.... +...++. ..  .++....   ......++|++|.+.
T Consensus        28 ~~~G~~VlI~Ga-G~vG~~a~qlak~~-Ga~~i~~~~~~~~~-~~a~~lG-ad--~~i~~~~~~~~~~~~~~~D~vid~~  101 (168)
T d1uufa2          28 AGPGKKVGVVGI-GGLGHMGIKLAHAM-GAHVVAFTTSEAKR-EAAKALG-AD--EVVNSRNADEMAAHLKSFDFILNTV  101 (168)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESSGGGH-HHHHHHT-CS--EEEETTCHHHHHTTTTCEEEEEECC
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHCC-CCCCHHHCCCHHHH-HHHHCCC-CC--EEEECCHHHHHHHHCCCCCEEEEEE
T ss_conf             899999999666-23889999986403-32100101305599-9975249-94--9997841567898637886413666


Q ss_pred             CCC
Q ss_conf             887
Q 029656          106 CPA  108 (190)
Q Consensus       106 ~~~  108 (190)
                      +..
T Consensus       102 g~~  104 (168)
T d1uufa2         102 AAP  104 (168)
T ss_dssp             SSC
T ss_pred             ECC
T ss_conf             523

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0045  Score=31.88  Aligned_cols=70  Identities=16%  Similarity=0.261  Sum_probs=50.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC------CCCEEEECC
Q ss_conf             8799975655577999999996099859998178889923454341599659975556663457------867899816
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI------EVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~------~~d~vi~~a  105 (190)
                      .+++|.| .|-+|+.+++.|... +..+.+++.+.+.......... ...+.++.+|..++...      +.+.+|-+.
T Consensus         4 nHiII~G-~g~~g~~l~~~L~~~-~~~v~vId~d~~~~~~~~~~~~-~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~   79 (153)
T d1id1a_           4 DHFIVCG-HSILAINTILQLNQR-GQNVTVISNLPEDDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGIDRCRAILALS   79 (153)
T ss_dssp             SCEEEEC-CSHHHHHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHH-CCCCEEEECCCCCHHHHHHHCCCCCCEEEECC
T ss_conf             8799989-888999999999976-9987999533055899999853-39968999068646779773540287999904

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.07  E-value=0.021  Score=28.36  Aligned_cols=94  Identities=13%  Similarity=-0.002  Sum_probs=53.6

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC------------CCCC
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663------------4578
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP------------LLIE   97 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~------------~~~~   97 (190)
                      ..+.+++|+| +|.+|...++.+... |.+|++++++....+ ....+   ..-..+..+..+.            ...+
T Consensus        25 ~~g~~vlV~G-~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~-~a~~~---ga~~~~~~~~~~~~~~~~~~~~~~~~g~g   98 (170)
T d1e3ja2          25 QLGTTVLVIG-AGPIGLVSVLAAKAY-GAFVVCTARSPRRLE-VAKNC---GADVTLVVDPAKEEESSIIERIRSAIGDL   98 (170)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHHHHH-HHHHT---TCSEEEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred             CCCCEEEEEC-CCCCCHHHHHHHHHH-CCCCCCCCHHHHHHH-HHHHC---CCCEEEECCCCCCCCCHHHHHHHCCCCCC
T ss_conf             9999899982-066442337667662-023101320777899-99972---99679955664433101110111023557


Q ss_pred             CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             67899816887885212580568998779999999999873990999956
Q 029656           98 VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTST  147 (190)
Q Consensus        98 ~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS  147 (190)
                      +|++|.++|...                 .....++.+++. .++++++.
T Consensus        99 ~D~vid~~g~~~-----------------~~~~a~~~~~~~-G~iv~~G~  130 (170)
T d1e3ja2          99 PNVTIDCSGNEK-----------------CITIGINITRTG-GTLMLVGM  130 (170)
T ss_dssp             CSEEEECSCCHH-----------------HHHHHHHHSCTT-CEEEECSC
T ss_pred             CCEEEECCCCHH-----------------HHHHHHHHHHCC-CCEEEEEC
T ss_conf             746564278717-----------------799999998307-85699956

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.013  Score=29.43  Aligned_cols=71  Identities=18%  Similarity=0.119  Sum_probs=43.6

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC----CCCCCCEEEECCC
Q ss_conf             798799975655577999999996099859998178889923454341599659975556663----4578678998168
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP----LLIEVDQIYHLAC  106 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~----~~~~~d~vi~~a~  106 (190)
                      .+.+++|+||+|.+|...++..... |.+|+++.++.++. +.+..+.   .-.++..+-.+.    .....|.++++.+
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~-Ga~Via~~~~~~k~-~~~~~lG---ad~vi~~~~~~~~~~l~~~~~~~vvD~Vg  105 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGRESTH-EYLKSLG---ASRVLPRDEFAESRPLEKQVWAGAIDTVG  105 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGH-HHHHHHT---EEEEEEGGGSSSCCSSCCCCEEEEEESSC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHC-CCCEEEEECCHHHH-HHHHHHC---CCCCCCCCCHHHHHHHHHHCCCEEEEECC
T ss_conf             9982899972444068899999985-99729984444677-7888642---01024656277888898642890698722

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.0012  Score=34.89  Aligned_cols=71  Identities=15%  Similarity=-0.026  Sum_probs=41.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC-------CCCCCCEEEE
Q ss_conf             987999756555779999999960998-59998178889923454341599659975556663-------4578678998
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-------LLIEVDQIYH  103 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-------~~~~~d~vi~  103 (190)
                      +.+|+|+||+|.+|...++..... |. .|+.+..+.+.......++ .  .-..+...-.+.       ...++|++|.
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~-Ga~~vi~~~~~~e~~~~l~~~~-g--ad~vi~~~~~~~~~~~~~~~~~GvDvv~D  106 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLL-GCSRVVGICGTQEKCLFLTSEL-G--FDAAVNYKTGNVAEQLREACPGGVDVYFD  106 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHT-TCSEEEEEESSHHHHHHHHHHS-C--CSEEEETTSSCHHHHHHHHCTTCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCCCEECCCCHHHHHHHHHHCC-C--CEEEEECCCHHHHHHHHHHHCCCCEEEEE
T ss_conf             988999789743638899999982-9862002334077776664034-5--23786311015899999985658659995


Q ss_pred             CCC
Q ss_conf             168
Q 029656          104 LAC  106 (190)
Q Consensus       104 ~a~  106 (190)
                      +.|
T Consensus       107 ~vG  109 (187)
T d1vj1a2         107 NVG  109 (187)
T ss_dssp             SSC
T ss_pred             CCC
T ss_conf             587

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0032  Score=32.64  Aligned_cols=74  Identities=15%  Similarity=0.125  Sum_probs=47.5

Q ss_pred             HHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEE
Q ss_conf             00000027987999756555779999999960998599981788899234543415996599755566634578678998
Q 029656           24 RFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYH  103 (190)
Q Consensus        24 ~~~~~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~  103 (190)
                      +....++.||++.|.| .|.||+.+++.+... |.+|.+.+..+.   ..++....  .+...   ..+......|++|-
T Consensus        16 r~t~~~l~Gk~v~V~G-yG~iG~g~A~~~rg~-G~~V~v~e~dp~---~al~A~~d--G~~v~---~~~~a~~~adivvt   85 (163)
T d1li4a1          16 RATDVMIAGKVAVVAG-YGDVGKGCAQALRGF-GARVIITEIDPI---NALQAAME--GYEVT---TMDEACQEGNIFVT   85 (163)
T ss_dssp             HHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHH---HHHHHHHT--TCEEC---CHHHHTTTCSEEEE
T ss_pred             HHHCCEECCCEEEEEC-CCCCCHHHHHHHHHC-CCEEEEEECCCC---HHHHHHCC--CEEEE---EHHHHHHHCCEEEE
T ss_conf             8737645588899956-552047889987757-983585413653---23775528--54864---33443422668874


Q ss_pred             CCCC
Q ss_conf             1688
Q 029656          104 LACP  107 (190)
Q Consensus       104 ~a~~  107 (190)
                      +.|.
T Consensus        86 aTGn   89 (163)
T d1li4a1          86 TTGC   89 (163)
T ss_dssp             CSSC
T ss_pred             CCCC
T ss_conf             3787

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.91  E-value=0.021  Score=28.35  Aligned_cols=35  Identities=20%  Similarity=0.105  Sum_probs=31.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             9879997565557799999999609985999817888
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      .+++.|.| .|.+|..++..|.++ |++|.+.+|+..
T Consensus         1 sk~iaIiG-aG~~G~~~A~~l~~~-G~~V~~~~r~~~   35 (184)
T d1bg6a2           1 SKTYAVLG-LGNGGHAFAAYLALK-GQSVLAWDIDAQ   35 (184)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECCHH
T ss_conf             99899989-669999999999988-997999989999

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0029  Score=32.87  Aligned_cols=39  Identities=28%  Similarity=0.322  Sum_probs=32.2

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             2798799975655577999999996099859998178889
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      .++.+++|+|++|.+|...++.+... |++|+++.+++++
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~-G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKL-GYQVVAVSGREST   68 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGG
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHC-CCEEEEEECCHHH
T ss_conf             58976898868996999999999980-9959999898899

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.85  E-value=0.033  Score=27.35  Aligned_cols=69  Identities=17%  Similarity=0.215  Sum_probs=44.9

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCC
Q ss_conf             027987999756555779999999960998599981788899234543415996599755566634578678998168
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~  106 (190)
                      .+++++|.|-| .|.+|+++++.|.+. |..|++.+.+.    ..+...... ....  .+..+.-...+|+++-||.
T Consensus        24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~-Gakvvv~d~d~----~~~~~~~~~-g~~~--~~~~~~~~~~~DI~iPcA~   92 (201)
T d1c1da1          24 SLDGLTVLVQG-LGAVGGSLASLAAEA-GAQLLVADTDT----ERVAHAVAL-GHTA--VALEDVLSTPCDVFAPCAM   92 (201)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCH----HHHHHHHHT-TCEE--CCGGGGGGCCCSEEEECSC
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEECCHH----HHHHHHHHH-CCCC--CCCCCCCCCCCEEEECCCC
T ss_conf             88999999989-888999999999977-99899961607----777777762-3555--6743123435426602454

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.77  E-value=0.026  Score=27.92  Aligned_cols=74  Identities=20%  Similarity=0.245  Sum_probs=45.9

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC--------CCCCCCEE
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663--------45786789
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP--------LLIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~--------~~~~~d~v  101 (190)
                      ..+.+++|+|++|.+|...++.+...+...|++++++....+ ....+ +..  ..+..+-.+.        ...++|++
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~-~~~~~-Ga~--~~i~~~~~~~~~~~~~~~~~~~~d~v  101 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVE-AAKRA-GAD--YVINASMQDPLAEIRRITESKGVDAV  101 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHH-HHHHH-TCS--EEEETTTSCHHHHHHHHTTTSCEEEE
T ss_pred             CCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHH-HHHHC-CCC--EEECCCCCCHHHHHHHHHHCCCCHHH
T ss_conf             998989999623554023421012222222222222025579-99982-995--02235775889999997641431233


Q ss_pred             EECCCC
Q ss_conf             981688
Q 029656          102 YHLACP  107 (190)
Q Consensus       102 i~~a~~  107 (190)
                      |.+++.
T Consensus       102 id~~g~  107 (170)
T d1jvba2         102 IDLNNS  107 (170)
T ss_dssp             EESCCC
T ss_pred             HCCCCC
T ss_conf             101222

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.70  E-value=0.0065  Score=31.06  Aligned_cols=75  Identities=15%  Similarity=0.137  Sum_probs=45.0

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH---HCCCCEEEEECCCCCCCCCCCCEEEECCC
Q ss_conf             279879997565557799999999609985999817888992345434---15996599755566634578678998168
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW---IGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~d~vi~~a~  106 (190)
                      .++++++|.| +|+.+++++..|.+. + ++.+..|+.+........+   ........+..+-........|.+||+..
T Consensus        16 ~~~k~vlIlG-aGG~arai~~aL~~~-~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp   92 (177)
T d1nvta1          16 VKDKNIVIYG-AGGAARAVAFELAKD-N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP   92 (177)
T ss_dssp             CCSCEEEEEC-CSHHHHHHHHHHTSS-S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHCCC-C-CEEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf             6899899989-759999999987045-3-034200104379998888887512244444323235540111334225774


Q ss_pred             C
Q ss_conf             8
Q 029656          107 P  107 (190)
Q Consensus       107 ~  107 (190)
                      .
T Consensus        93 ~   93 (177)
T d1nvta1          93 I   93 (177)
T ss_dssp             T
T ss_pred             C
T ss_conf             1

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.66  E-value=0.024  Score=28.07  Aligned_cols=72  Identities=17%  Similarity=0.039  Sum_probs=43.8

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCHHHHHHHHCCCCEEEEEC---CCCCC--------CCCC
Q ss_conf             27987999756555779999999960998-599981788899234543415996599755---56663--------4578
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRH---DVTEP--------LLIE   97 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~---D~~~~--------~~~~   97 (190)
                      ..|.+|+|+|+ |.+|...++.+... |. +|+++++++.... ...++   ..-.++..   |..+.        ...+
T Consensus        27 ~~G~~VlV~Ga-G~iG~~~~~~ak~~-Ga~~Vi~~~~~~~~~~-~a~~l---Ga~~vi~~~~~~~~~~~~~i~~~~~~~g  100 (182)
T d1vj0a2          27 FAGKTVVIQGA-GPLGLFGVVIARSL-GAENVIVIAGSPNRLK-LAEEI---GADLTLNRRETSVEERRKAIMDITHGRG  100 (182)
T ss_dssp             CBTCEEEEECC-SHHHHHHHHHHHHT-TBSEEEEEESCHHHHH-HHHHT---TCSEEEETTTSCHHHHHHHHHHHTTTSC
T ss_pred             CCCCEEEEECC-CCCCHHHEECCCCC-CCCCCCCCCCCCCCCC-CCCCC---CCEEEEECCCCCHHHHHHHHHHHHCCCC
T ss_conf             99799999899-86522220223333-2322123333222121-22344---4337874244214778999998618977


Q ss_pred             CCEEEECCCC
Q ss_conf             6789981688
Q 029656           98 VDQIYHLACP  107 (190)
Q Consensus        98 ~d~vi~~a~~  107 (190)
                      +|+||.+.|.
T Consensus       101 ~Dvvid~vG~  110 (182)
T d1vj0a2         101 ADFILEATGD  110 (182)
T ss_dssp             EEEEEECSSC
T ss_pred             CEEEEECCCC
T ss_conf             3388424774

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.62  E-value=0.029  Score=27.60  Aligned_cols=33  Identities=39%  Similarity=0.559  Sum_probs=27.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             879997565557799999999609985999817888
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      |+|.|.| .|++|..++..+ .. |++|+++|.+..
T Consensus         1 MkI~ViG-lG~vGl~~a~~~-a~-g~~V~g~Din~~   33 (196)
T d1dlja2           1 MKIAVAG-SGYVGLSLGVLL-SL-QNEVTIVDILPS   33 (196)
T ss_dssp             CEEEEEC-CSHHHHHHHHHH-TT-TSEEEEECSCHH
T ss_pred             CEEEEEC-CCHHHHHHHHHH-HC-CCCEEEEECCHH
T ss_conf             9899989-876189999999-87-992899989989

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.61  E-value=0.013  Score=29.50  Aligned_cols=71  Identities=14%  Similarity=0.084  Sum_probs=45.6

Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCC
Q ss_conf             0027987999756555779999999960998599981788899234543415996599755566634578678998168
Q 029656           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        28 ~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~  106 (190)
                      ..+++++|.|-| -|-+|+++++.|.+. |..+++.+.+.    ..+...........  .+..+.....||+++=||.
T Consensus        35 ~~l~g~~v~IqG-~GnVG~~~a~~L~~~-Gakvv~~d~~~----~~~~~~~~~~g~~~--~~~~~~~~~~cDIl~PcA~  105 (230)
T d1leha1          35 DSLEGLAVSVQG-LGNVAKALCKKLNTE-GAKLVVTDVNK----AAVSAAVAEEGADA--VAPNAIYGVTCDIFAPCAL  105 (230)
T ss_dssp             CCCTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCH----HHHHHHHHHHCCEE--CCGGGTTTCCCSEEEECSC
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEECCCH----HHHHHHHHHCCCCC--CCCCCCCCCCCCEECCCCC
T ss_conf             997899999989-888999999999987-99897514337----88999998339732--6874323566557640555

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.017  Score=28.91  Aligned_cols=73  Identities=18%  Similarity=0.043  Sum_probs=46.0

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEEC-C---CCCCCCCCCCEEEECC
Q ss_conf             27987999756555779999999960998599981788899234543415996599755-5---6663457867899816
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-D---VTEPLLIEVDQIYHLA  105 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-D---~~~~~~~~~d~vi~~a  105 (190)
                      ..+.+++|.|+ |.+|...++.+... |.+|++++++....+ ...++. ..  .++.. +   ..+....++|.++.+.
T Consensus        26 ~~g~~vlI~Ga-G~vG~~a~q~ak~~-G~~vi~~~~~~~k~~-~a~~lG-a~--~~i~~~~~~~~~~~~~~~~d~vi~~~   99 (168)
T d1piwa2          26 GPGKKVGIVGL-GGIGSMGTLISKAM-GAETYVISRSSRKRE-DAMKMG-AD--HYIATLEEGDWGEKYFDTFDLIVVCA   99 (168)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHH-TCEEEEEESSSTTHH-HHHHHT-CS--EEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred             CCCCEEEEECC-CCCCHHHHHHHHHC-CCCCCCCCCCHHHHH-HHHCCC-CC--EEEECCCHHHHHHHHHCCCCEEEEEE
T ss_conf             99999999788-87621578876511-321001122112787-751468-86--78606434789986402563599982


Q ss_pred             CCC
Q ss_conf             887
Q 029656          106 CPA  108 (190)
Q Consensus       106 ~~~  108 (190)
                      +..
T Consensus       100 ~~~  102 (168)
T d1piwa2         100 SSL  102 (168)
T ss_dssp             SCS
T ss_pred             CCC
T ss_conf             677

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.47  E-value=0.0029  Score=32.89  Aligned_cols=65  Identities=17%  Similarity=0.269  Sum_probs=42.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCC
Q ss_conf             87999756555779999999960998599981788899234543415996599755566634578678998168
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~  106 (190)
                      |+|-+.| .|.+|..+++.|++. |+.|++.+|+...    ...+... ....  .+-..+...++|++|-+..
T Consensus         1 MkIgiIG-lG~MG~~~A~~L~~~-G~~V~~~d~~~~~----~~~~~~~-~~~~--~~~~~e~~~~~d~ii~~v~   65 (161)
T d1vpda2           1 MKVGFIG-LGIMGKPMSKNLLKA-GYSLVVSDRNPEA----IADVIAA-GAET--ASTAKAIAEQCDVIITMLP   65 (161)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHT-TCEEEEECSCHHH----HHHHHHT-TCEE--CSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEE-HHHHHHHHHHHHHHC-CCEEEEEECCCCH----HHHHHHH-HHHH--CCCHHHHHHCCCEEEEECC
T ss_conf             9899994-369899999999987-9969999288403----5789874-0001--0239999858995899749

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.048  Score=26.50  Aligned_cols=39  Identities=18%  Similarity=0.259  Sum_probs=31.9

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             2798799975655577999999996099859998178889
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      ++..+|+|.| .|++|.+++..|...+-.+++++|.+.-+
T Consensus        28 L~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~Ve   66 (247)
T d1jw9b_          28 LKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVS   66 (247)
T ss_dssp             HHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCC
T ss_pred             HHCCCEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             9679899989-78899999999998499868998884302

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.40  E-value=0.0055  Score=31.44  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=30.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             8799975655577999999996099859998178889
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      ++|-+.| .|.+|..+++.|++. |++|.+.+|+...
T Consensus         2 ~kIg~IG-lG~MG~~iA~~L~~~-g~~v~~~d~~~~~   36 (162)
T d3cuma2           2 KQIAFIG-LGHMGAPMATNLLKA-GYLLNVFDLVQSA   36 (162)
T ss_dssp             CEEEEEC-CSTTHHHHHHHHHHT-TCEEEEECSSHHH
T ss_pred             CEEEEEE-EHHHHHHHHHHHHHC-CCEEEEEECCHHH
T ss_conf             9999997-789999999999977-9968999783014

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0078  Score=30.62  Aligned_cols=39  Identities=18%  Similarity=0.252  Sum_probs=32.9

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf             79879997565557799999999609985999817888992
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK   71 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~   71 (190)
                      +-++|.|.| +|.+|..++..++.. |+.|.+.+++.+...
T Consensus         3 ~IkkvaViG-aG~mG~~iA~~~a~~-G~~V~l~D~~~~~l~   41 (192)
T d1f0ya2           3 IVKHVTVIG-GGLMGAGIAQVAAAT-GHTVVLVDQTEDILA   41 (192)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCHHHHH
T ss_pred             EEEEEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCHHHHH
T ss_conf             268999989-688999999999958-991799978747777

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.26  E-value=0.055  Score=26.17  Aligned_cols=39  Identities=23%  Similarity=0.298  Sum_probs=33.2

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             27987999756555779999999960998599981788899
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      ...++++|.| +|++|-.++..|.+. +.+|.++.+.+.-.
T Consensus        28 ~~~~~vvIIG-gG~iG~E~A~~l~~~-g~~Vtli~~~~~~l   66 (121)
T d1d7ya2          28 RPQSRLLIVG-GGVIGLELAATARTA-GVHVSLVETQPRLM   66 (121)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSSSTT
T ss_pred             HCCCEEEEEC-CCHHHHHHHHHHHCC-CCEEEEEEECCCCC
T ss_conf             2088599999-633499988886066-61699996066211

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=95.24  E-value=0.051  Score=26.36  Aligned_cols=38  Identities=24%  Similarity=0.279  Sum_probs=33.2

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             2798799975655577999999996099859998178889
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      +.++++.|.| .|.||+.+++.+... |.+|+..++....
T Consensus        43 l~~ktvgIiG-~G~IG~~va~~l~~f-g~~v~~~d~~~~~   80 (199)
T d1dxya1          43 LGQQTVGVMG-TGHIGQVAIKLFKGF-GAKVIAYDPYPMK   80 (199)
T ss_dssp             GGGSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCCS
T ss_pred             CCCEEEEEEE-CCCCCCCCCCCCCCC-CEEEECCCCCCCH
T ss_conf             4530356642-144533221111122-1145404774200

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=95.16  E-value=0.019  Score=28.62  Aligned_cols=75  Identities=11%  Similarity=-0.043  Sum_probs=45.1

Q ss_pred             CCCEEEE-ECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEEC---CCCCC----------CCC
Q ss_conf             7987999-756555779999999960998599981788899234543415996599755---56663----------457
Q 029656           31 SNMRILV-TGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH---DVTEP----------LLI   96 (190)
Q Consensus        31 ~~~~vlI-tGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~---D~~~~----------~~~   96 (190)
                      .+.+++| .||+|.+|...++..... |.+++++.++.+..++....+.....-..+..   |..+.          ...
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~-Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~  106 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLL-NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGG  106 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHH-TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTC
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHC-CCEEEEEEECCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf             99979999578846889999998523-88289999036432067766651456489855544256778999998761268


Q ss_pred             CCCEEEECCC
Q ss_conf             8678998168
Q 029656           97 EVDQIYHLAC  106 (190)
Q Consensus        97 ~~d~vi~~a~  106 (190)
                      ++|++|++.|
T Consensus       107 ~vdvv~D~vg  116 (189)
T d1gu7a2         107 EAKLALNCVG  116 (189)
T ss_dssp             CEEEEEESSC
T ss_pred             CCEEEEECCC
T ss_conf             8359997787

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.14  E-value=0.06  Score=25.96  Aligned_cols=73  Identities=16%  Similarity=0.084  Sum_probs=46.0

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEE-CCCCCC--------CCCCCCE
Q ss_conf             2798799975655577999999996099859998178889923454341599659975-556663--------4578678
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIR-HDVTEP--------LLIEVDQ  100 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~-~D~~~~--------~~~~~d~  100 (190)
                      ..+.+|+|.|+ |.+|...+..+...++..|++++++..+... ..+.   .....+. .+..+.        ...++|+
T Consensus        27 k~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~-a~~~---Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~  101 (176)
T d2jhfa2          27 TQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAK-AKEV---GATECVNPQDYKKPIQEVLTEMSNGGVDF  101 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHH-HHHT---TCSEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CCCCEEEEECC-CCCHHHHHHHHHHCCCCEEEEECCCHHHHHH-HHHH---CCEEEEECCCCHHHHHHHHHHHHCCCCCE
T ss_conf             99999999889-8707899999997498357764372789999-9982---98369836884127999999970489777


Q ss_pred             EEECCCC
Q ss_conf             9981688
Q 029656          101 IYHLACP  107 (190)
Q Consensus       101 vi~~a~~  107 (190)
                      +|.+.|.
T Consensus       102 vid~~G~  108 (176)
T d2jhfa2         102 SFEVIGR  108 (176)
T ss_dssp             EEECSCC
T ss_pred             EEECCCC
T ss_conf             9864774

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.11  E-value=0.037  Score=27.06  Aligned_cols=69  Identities=25%  Similarity=0.285  Sum_probs=42.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCC----------CCEEEEECCCCCCCCCCCCEEE
Q ss_conf             879997565557799999999609985999817888992345434159----------9659975556663457867899
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGH----------PRFELIRHDVTEPLLIEVDQIY  102 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~d~vi  102 (190)
                      |+|.|.| +|..|.+++..|.+. +++|.+..|..+.  +....+...          ........+-.+....+.|+||
T Consensus         1 MkI~ViG-aG~~GtalA~~la~~-g~~V~l~~r~~~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii   76 (180)
T d1txga2           1 MIVSILG-AGAMGSALSVPLVDN-GNEVRIWGTEFDT--EILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVL   76 (180)
T ss_dssp             CEEEEES-CCHHHHHHHHHHHHH-CCEEEEECCGGGH--HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEE
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEEECCCH--HHHHHHHHHHHHHHHCCHHCCCCCCCCCCHHHHHHCCCHHH
T ss_conf             9899999-799999999999988-9989999735657--78998755444554120003320000012899873433000


Q ss_pred             ECC
Q ss_conf             816
Q 029656          103 HLA  105 (190)
Q Consensus       103 ~~a  105 (190)
                      .+.
T Consensus        77 ~av   79 (180)
T d1txga2          77 LGV   79 (180)
T ss_dssp             ECS
T ss_pred             CCC
T ss_conf             023

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=94.99  E-value=0.042  Score=26.79  Aligned_cols=66  Identities=12%  Similarity=0.210  Sum_probs=39.9

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEE-CCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCC
Q ss_conf             798799975655577999999996099859998-17888992345434159965997555666345786789981688
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACP  107 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~~  107 (190)
                      +.+++.|.| .|.+|+.+++.+.+..+.++..+ +++.....          .......+-......++|+|+.+...
T Consensus         2 ~kirvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~----------~~~~~~~~~~~~~~~~~D~Vvi~tp~   68 (170)
T d1f06a1           2 TNIRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT----------KTPVFDVADVDKHADDVDVLFLCMGS   68 (170)
T ss_dssp             CCEEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS----------SSCEEEGGGGGGTTTTCSEEEECSCT
T ss_pred             CCCEEEEEC-CHHHHHHHHHHHHHCCCCEEEEEEECCCCCCC----------CCCCCCCHHHHHHCCCCCEEEEECCC
T ss_conf             855699989-70999999999985899689999701434332----------32211102466643566558994787

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.94  E-value=0.069  Score=25.64  Aligned_cols=38  Identities=18%  Similarity=0.124  Sum_probs=33.3

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             2798799975655577999999996099859998178889
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      +.++++.|.| .|.||+.+++.+... |.+|...++....
T Consensus        40 l~gk~vgIiG-~G~IG~~va~~l~~~-g~~v~~~d~~~~~   77 (181)
T d1qp8a1          40 IQGEKVAVLG-LGEIGTRVGKILAAL-GAQVRGFSRTPKE   77 (181)
T ss_dssp             CTTCEEEEES-CSTHHHHHHHHHHHT-TCEEEEECSSCCC
T ss_pred             CCCCEEEEEC-CCCCCCCCEEEEECC-CCCCCCCCCCCCC
T ss_conf             3573478703-434653210013201-1222112465543

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.90  E-value=0.049  Score=26.44  Aligned_cols=37  Identities=27%  Similarity=0.195  Sum_probs=31.9

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             798799975655577999999996099859998178889
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      ..++++|.| +|+||-.++..|... |.+|.++.+...-
T Consensus        21 ~p~~i~IiG-~G~ig~E~A~~l~~~-G~~Vtiv~~~~~l   57 (119)
T d3lada2          21 VPGKLGVIG-AGVIGLELGSVWARL-GAEVTVLEAMDKF   57 (119)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSSSS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHC-CCCEEEEEEECCC
T ss_conf             797299998-872799999999976-9935788760224

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.89  E-value=0.0065  Score=31.05  Aligned_cols=65  Identities=14%  Similarity=0.118  Sum_probs=42.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCC
Q ss_conf             87999756555779999999960998599981788899234543415996599755566634578678998168
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLAC  106 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~  106 (190)
                      |||-|.| .|.+|+.+++.|++. |+++.+.+++..........-.   .+.    +..++....+|+||-+..
T Consensus         1 MkIgiIG-~G~mG~~ia~~l~~~-g~~v~~~~~~~~~~~~~~~~~~---~~~----~~~~e~~~~~diIi~~v~   65 (152)
T d1i36a2           1 LRVGFIG-FGEVAQTLASRLRSR-GVEVVTSLEGRSPSTIERARTV---GVT----ETSEEDVYSCPVVISAVT   65 (152)
T ss_dssp             CEEEEES-CSHHHHHHHHHHHHT-TCEEEECCTTCCHHHHHHHHHH---TCE----ECCHHHHHTSSEEEECSC
T ss_pred             CEEEEEC-HHHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHCC---CCC----CCHHHHHHHCCEEEEEEC
T ss_conf             9899981-899999999999987-9969997485157788764112---321----348999861572899831

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.85  E-value=0.074  Score=25.51  Aligned_cols=76  Identities=14%  Similarity=0.176  Sum_probs=47.9

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEE-CCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf             799975655577999999996099859998-1788899234543415996599755566634578678998168878852
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIF  112 (190)
Q Consensus        34 ~vlItGa~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~~~~~~~  112 (190)
                      ||.|.|++|.+|+.+++.+.+..+.++... ++. ...                    ......++|++|.+..+..   
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~-~~~--------------------~~~~~~~~DvvIDFS~p~~---   56 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG-DPL--------------------SLLTDGNTEVVIDFTHPDV---   56 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT-CCT--------------------HHHHTTTCSEEEECCCTTT---
T ss_pred             CEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECC-CCH--------------------HHHCCCCCCEEEECCCHHH---
T ss_conf             9899899987799999999858998899998327-866--------------------6604456888998666899---


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCE
Q ss_conf             1258056899877999999999987399099995660
Q 029656          113 YKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSE  149 (190)
Q Consensus       113 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~~  149 (190)
                                     +...++.|.+.++.+|. +|++
T Consensus        57 ---------------~~~~~~~~~~~~~~~Vi-GTTG   77 (135)
T d1yl7a1          57 ---------------VMGNLEFLIDNGIHAVV-GTTG   77 (135)
T ss_dssp             ---------------HHHHHHHHHHTTCEEEE-CCCC
T ss_pred             ---------------HHHHHHHHHHCCCCEEE-ECCC
T ss_conf             ---------------99999998864987799-5442

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.81  E-value=0.056  Score=26.13  Aligned_cols=73  Identities=14%  Similarity=0.021  Sum_probs=44.0

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC-------CCCCCCEEE
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663-------457867899
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-------LLIEVDQIY  102 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-------~~~~~d~vi  102 (190)
                      ..+.+|+|.| .|.+|...++.+...+...|+++++++.    ++..........++..+-.+.       ...++|++|
T Consensus        31 ~~g~~vli~G-aG~vG~~~~~~a~~~g~~~vv~~~~~~~----k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vi  105 (172)
T d1h2ba2          31 YPGAYVAIVG-VGGLGHIAVQLLKVMTPATVIALDVKEE----KLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAM  105 (172)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHHCCCEEEEEESSHH----HHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHHCCCCCCCCCCHHH----HHHHHHHCCCCEEECCCCCHHHHHHHHHCCCCCEEEE
T ss_conf             9998999957-8849998998877636752001331167----7888863155134238635799988862798752999


Q ss_pred             ECCCC
Q ss_conf             81688
Q 029656          103 HLACP  107 (190)
Q Consensus       103 ~~a~~  107 (190)
                      .+.|.
T Consensus       106 d~~g~  110 (172)
T d1h2ba2         106 DFVGS  110 (172)
T ss_dssp             ESSCC
T ss_pred             EECCC
T ss_conf             80674

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.79  E-value=0.076  Score=25.43  Aligned_cols=37  Identities=24%  Similarity=0.236  Sum_probs=31.5

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             798799975655577999999996099859998178889
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      ..++++|.| +|++|-.++..|.+. |.+|+++.+.+.-
T Consensus        20 ~p~~vvIiG-gG~~G~E~A~~l~~~-g~~Vtlve~~~~i   56 (115)
T d1lvla2          20 LPQHLVVVG-GGYIGLELGIAYRKL-GAQVSVVEARERI   56 (115)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHH-TCEEEEECSSSSS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHC-CCCEEEEEEECCC
T ss_conf             798699999-977899999998432-6612788540000

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=94.76  E-value=0.059  Score=26.03  Aligned_cols=40  Identities=15%  Similarity=0.203  Sum_probs=34.4

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             027987999756555779999999960998599981788899
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      .+.++++.|.| .|.||+.+++.+... |.+|...++.....
T Consensus        46 eL~gktvgIiG-~G~IG~~va~~l~~f-g~~v~~~d~~~~~~   85 (193)
T d1mx3a1          46 RIRGETLGIIG-LGRVGQAVALRAKAF-GFNVLFYDPYLSDG   85 (193)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEECTTSCTT
T ss_pred             EEECCEEEEEC-CCCCCCCCEEEEECC-CCCEEECCCCCCCC
T ss_conf             54076688833-433553110000002-32102126731111

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.081  Score=25.28  Aligned_cols=72  Identities=18%  Similarity=0.158  Sum_probs=43.4

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC----------CCCCC
Q ss_conf             27987999756555779999999960998-59998178889923454341599659975556663----------45786
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP----------LLIEV   98 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~----------~~~~~   98 (190)
                      ..+.+|+|.|+ |.+|...++.+... |. +|++++++...... ..++ +..  .....+-.+.          ...++
T Consensus        25 ~~gd~VlI~G~-G~iG~~~~~~a~~~-G~~~Vi~~d~~~~rl~~-a~~~-Ga~--~~~~~~~~~~~~~~~~~~~~~g~g~   98 (171)
T d1pl8a2          25 TLGHKVLVCGA-GPIGMVTLLVAKAM-GAAQVVVTDLSATRLSK-AKEI-GAD--LVLQISKESPQEIARKVEGQLGCKP   98 (171)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHT-TCSEEEEEESCHHHHHH-HHHT-TCS--EEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred             CCCCEEEEECC-CCCHHHHHHHHHHC-CCCEEEECCCCHHHHHH-HHHH-CCC--CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99998999888-84189999999873-98258740699899999-9995-975--0004433220000011001579874


Q ss_pred             CEEEECCCC
Q ss_conf             789981688
Q 029656           99 DQIYHLACP  107 (190)
Q Consensus        99 d~vi~~a~~  107 (190)
                      |++|.+.|.
T Consensus        99 Dvvid~~G~  107 (171)
T d1pl8a2          99 EVTIECTGA  107 (171)
T ss_dssp             SEEEECSCC
T ss_pred             EEEEECCCC
T ss_conf             399840687

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.67  E-value=0.082  Score=25.27  Aligned_cols=73  Identities=14%  Similarity=0.099  Sum_probs=43.3

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC-------CCCCCCEEE
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663-------457867899
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP-------LLIEVDQIY  102 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~-------~~~~~d~vi  102 (190)
                      ..+.+|+|.|+ |.+|...++.+...+...+++.+++..+. +...++ +  ...++..+-.+.       ...++|++|
T Consensus        27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~-~~a~~~-G--a~~~i~~~~~~~~~~i~~~t~gg~D~vi  101 (174)
T d1f8fa2          27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRL-ELAKQL-G--ATHVINSKTQDPVAAIKEITDGGVNFAL  101 (174)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHH-HHHHHH-T--CSEEEETTTSCHHHHHHHHTTSCEEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHCCCCCCCCEEEEECCHHHHH-HHHHHC-C--CEEEEECCCCCHHHHHHHHCCCCCCEEE
T ss_conf             99988999678-87886454201102312035524689999-999972-9--9079708985799999997299973999


Q ss_pred             ECCCC
Q ss_conf             81688
Q 029656          103 HLACP  107 (190)
Q Consensus       103 ~~a~~  107 (190)
                      .+.|.
T Consensus       102 d~~G~  106 (174)
T d1f8fa2         102 ESTGS  106 (174)
T ss_dssp             ECSCC
T ss_pred             ECCCC
T ss_conf             86896

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.66  E-value=0.082  Score=25.25  Aligned_cols=74  Identities=14%  Similarity=-0.031  Sum_probs=46.2

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC---------CCCCCC
Q ss_conf             02798799975655577999999996099859998178889923454341599659975556663---------457867
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP---------LLIEVD   99 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~---------~~~~~d   99 (190)
                      ...+.+|+|.| .|.+|...++.+...+..+|++++++..+.+. ...+   ....++...-.|.         ...+.|
T Consensus        25 ~~~G~~VlV~G-aGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~-a~~l---Ga~~~i~~~~~d~~~~~~~~~~~~~G~d   99 (174)
T d1p0fa2          25 VTPGSTCAVFG-LGGVGFSAIVGCKAAGASRIIGVGTHKDKFPK-AIEL---GATECLNPKDYDKPIYEVICEKTNGGVD   99 (174)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGHHH-HHHT---TCSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHHHHCCCCEEECCCCHHHHHHH-HHHC---CCCEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf             99999999987-77165899999998198512312781789999-9971---9917976877306778888872279885


Q ss_pred             EEEECCCC
Q ss_conf             89981688
Q 029656          100 QIYHLACP  107 (190)
Q Consensus       100 ~vi~~a~~  107 (190)
                      ++|.+.+.
T Consensus       100 ~vid~~g~  107 (174)
T d1p0fa2         100 YAVECAGR  107 (174)
T ss_dssp             EEEECSCC
T ss_pred             EEEECCCC
T ss_conf             89983787

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.58  E-value=0.074  Score=25.50  Aligned_cols=73  Identities=12%  Similarity=0.087  Sum_probs=43.6

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC--------CCCCCCEE
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663--------45786789
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP--------LLIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~--------~~~~~d~v  101 (190)
                      ..+.+|+|.| .|.+|...++.+...+...|++++++..+.. ....+ +  ..+++...-.+.        ...++|++
T Consensus        26 ~~g~~VlI~G-aG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~-~a~~l-G--a~~~i~~~~~~~~~~v~~~t~g~G~D~v  100 (174)
T d1jqba2          26 EMGSSVVVIG-IGAVGLMGIAGAKLRGAGRIIGVGSRPICVE-AAKFY-G--ATDILNYKNGHIEDQVMKLTNGKGVDRV  100 (174)
T ss_dssp             CTTCCEEEEC-CSHHHHHHHHHHHTTTCSCEEEECCCHHHHH-HHHHH-T--CSEEECGGGSCHHHHHHHHTTTSCEEEE
T ss_pred             CCCCEEEEEC-CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHH-HHHHH-C--CCCCCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf             9999899974-7750244455430222322210021046677-78760-7--6332442102578888877512676437


Q ss_pred             EECCCC
Q ss_conf             981688
Q 029656          102 YHLACP  107 (190)
Q Consensus       102 i~~a~~  107 (190)
                      |.++|.
T Consensus       101 id~~g~  106 (174)
T d1jqba2         101 IMAGGG  106 (174)
T ss_dssp             EECSSC
T ss_pred             EECCCC
T ss_conf             981588

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.52  E-value=0.037  Score=27.10  Aligned_cols=36  Identities=31%  Similarity=0.522  Sum_probs=31.2

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             79879997565557799999999609985999817888
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      +.++|+|.| +|.-|...+..|.+. |+.|.++.++..
T Consensus         1 k~KKI~IIG-aG~sGL~aA~~L~k~-G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVG-AGFSGAVIGRQLAEK-GHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEEESSSS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCCC
T ss_conf             998799989-749999999999968-997899978998

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.51  E-value=0.025  Score=27.99  Aligned_cols=37  Identities=19%  Similarity=0.195  Sum_probs=32.8

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             02798799975655577999999996099859998178
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      .+.|++++|.|.+.-+|+.++..|+++ +..|..+...
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~-gaTVt~~~~~   62 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLAND-GATVYSVDVN   62 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTT-SCEEEEECSS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHC-CCEEEEECCC
T ss_conf             778988999888511179999999878-9979994456

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.51  E-value=0.042  Score=26.80  Aligned_cols=36  Identities=25%  Similarity=0.339  Sum_probs=31.6

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             27987999756555779999999960998599981788
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      .+.++|+|.| +|..|...+..|.++ |++|.+++|..
T Consensus         4 ~~~~kVvVIG-aGiaGl~~A~~L~~~-G~~V~vier~~   39 (268)
T d1c0pa1           4 HSQKRVVVLG-SGVIGLSSALILARK-GYSVHILARDL   39 (268)
T ss_dssp             CCSCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             CCCCCEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCC
T ss_conf             8999689999-509999999999978-99789996888

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=94.44  E-value=0.01  Score=29.97  Aligned_cols=38  Identities=18%  Similarity=0.260  Sum_probs=32.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf             9879997565557799999999609985999817888992
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK   71 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~   71 (190)
                      -++|.|.| +|.+|+.++..++.. |++|.+.+++.+...
T Consensus         4 I~~vaViG-aG~mG~~iA~~~a~~-G~~V~l~D~~~~~l~   41 (186)
T d1wdka3           4 VKQAAVLG-AGIMGGGIAYQSASK-GTPILMKDINEHGIE   41 (186)
T ss_dssp             CSSEEEEC-CHHHHHHHHHHHHHT-TCCEEEECSSHHHHH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECCHHHHH
T ss_conf             78899989-698999999999968-996999979778876

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.40  E-value=0.017  Score=28.89  Aligned_cols=36  Identities=25%  Similarity=0.165  Sum_probs=30.6

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             27987999756555779999999960998599981788
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      +.+++|.|.| +|..|.+++..|.+. +++|.+..|+.
T Consensus         5 ~~m~KI~ViG-aG~wGtAlA~~La~~-g~~V~l~~r~~   40 (189)
T d1n1ea2           5 LYLNKAVVFG-SGAFGTALAMVLSKK-CREVCVWHMNE   40 (189)
T ss_dssp             CCEEEEEEEC-CSHHHHHHHHHHHTT-EEEEEEECSCH
T ss_pred             CEECEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEEECH
T ss_conf             1015699999-899999999999975-99689999257

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.34  E-value=0.014  Score=29.27  Aligned_cols=65  Identities=20%  Similarity=0.325  Sum_probs=41.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECC
Q ss_conf             8799975655577999999996099859998178889923454341599659975556663457867899816
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a  105 (190)
                      |++.+.| .|.+|+++++.|.+. ++++++.+|+.+...+ +....+   +... .|. ++...++|+||-+.
T Consensus         1 MkIg~IG-~G~mG~al~~~l~~~-~~~i~v~~r~~~~~~~-l~~~~g---~~~~-~~~-~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIG-VGKMASAIIKGLKQT-PHELIISGSSLERSKE-IAEQLA---LPYA-MSH-QDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHTTS-SCEEEEECSSHHHHHH-HHHHHT---CCBC-SSH-HHHHHTCSEEEECS
T ss_pred             CEEEEEE-CCHHHHHHHHHHHHC-CCEEEEECCHHHHHHH-HCCCCC---EEEE-CHH-HHHHHCCCEEEEEC
T ss_conf             9899990-439999999999858-9818998271776776-312322---0020-101-33220243045502

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.22  E-value=0.1  Score=24.71  Aligned_cols=70  Identities=19%  Similarity=0.103  Sum_probs=43.8

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEEC-CCCCCCCCCCCEEEECCCCC
Q ss_conf             987999756555779999999960998599981788899234543415996599755-56663457867899816887
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH-DVTEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~-D~~~~~~~~~d~vi~~a~~~  108 (190)
                      .|++.+.|-.|-==..|++.|.++ |+.|...|+........+..    ..+.+..+ |.  ....+.|.||...+..
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L~~~-G~~VsGSD~~~~~~t~~L~~----~Gi~i~~gh~~--~~i~~~d~vV~SsAI~   71 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHEFSN-GNDVYGSNIEETERTAYLRK----LGIPIFVPHSA--DNWYDPDLVIKTPAVR   71 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT-TCEEEEECSSCCHHHHHHHH----TTCCEESSCCT--TSCCCCSEEEECTTCC
T ss_pred             CCEEEEEEECHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHH----CCCEEEEEECC--CCCCCCCEEEEECCCC
T ss_conf             968999957789999999999968-99699872778866899997----79868963110--2567997899825759

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.22  E-value=0.029  Score=27.67  Aligned_cols=35  Identities=29%  Similarity=0.383  Sum_probs=31.0

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             2798799975655577999999996099859998178
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      +++++++|.| +|.+|..-++.|++. |.+|+++...
T Consensus        11 l~gkrvLViG-gG~va~~ka~~Ll~~-GA~VtVvap~   45 (150)
T d1kyqa1          11 LKDKRILLIG-GGEVGLTRLYKLMPT-GCKLTLVSPD   45 (150)
T ss_dssp             CTTCEEEEEE-ESHHHHHHHHHHGGG-TCEEEEEEEE
T ss_pred             ECCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECC
T ss_conf             0898799989-799999999999978-9979999188

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.20  E-value=0.054  Score=26.24  Aligned_cols=36  Identities=22%  Similarity=0.401  Sum_probs=31.5

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             79879997565557799999999609985999817888
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ..++++|.| +|++|..++..|.+. |.+|+++.+...
T Consensus        29 ~~k~vvViG-gG~iG~E~A~~l~~~-g~~Vtlie~~~~   64 (123)
T d1nhpa2          29 EVNNVVVIG-SGYIGIEAAEAFAKA-GKKVTVIDILDR   64 (123)
T ss_dssp             TCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSSS
T ss_pred             CCCEEEEEC-CHHHHHHHHHHHHCC-CEEEEEEEECCC
T ss_conf             897899999-718799999986104-537999974572

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.16  E-value=0.11  Score=24.63  Aligned_cols=39  Identities=18%  Similarity=-0.008  Sum_probs=33.1

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             02798799975655577999999996099859998178889
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      .+.++++.|.| .|.||+.+++.+... +.+|...++....
T Consensus        41 ~l~~~~vgiiG-~G~IG~~va~~l~~f-g~~v~~~d~~~~~   79 (188)
T d1sc6a1          41 EARGKKLGIIG-YGHIGTQLGILAESL-GMYVYFYDIENKL   79 (188)
T ss_dssp             CSTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCCC
T ss_pred             CCCCEEEEEEE-CCCCHHHHHHHCCCC-CCEEEECCCCCCC
T ss_conf             00104788863-044303444210244-4157631333341

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=94.11  E-value=0.047  Score=26.55  Aligned_cols=50  Identities=10%  Similarity=0.180  Sum_probs=38.8

Q ss_pred             HHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
Q ss_conf             000000279879997565557799999999609985999817888992345
Q 029656           24 RFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNL   74 (190)
Q Consensus        24 ~~~~~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~   74 (190)
                      ..-...+.|++++|.|.+..+|+.++..|.+. ++.|+.+...........
T Consensus        29 ~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~-gatVt~~h~~t~~l~~~~   78 (166)
T d1b0aa1          29 ERYNIDTFGLNAVVIGASNIVGRPMSMELLLA-GCTTTVTHRFTKNLRHHV   78 (166)
T ss_dssp             HHTTCCCTTCEEEEECCCTTTHHHHHHHHHTT-TCEEEEECSSCSCHHHHH
T ss_pred             HHCCCCCCCCEEEEEECCCCCCHHHHHHHHHH-HCCCCCCCCCCCHHHHHH
T ss_conf             98095613526999844543448999998875-344320234561267777

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=94.11  E-value=0.053  Score=26.25  Aligned_cols=114  Identities=12%  Similarity=0.127  Sum_probs=61.6

Q ss_pred             CCEEEEECCCCHHHHH--HHHHHHHC---CCCEEEEECCCCCCCHHH---HHHHH--CCCCEEEEECCCCCCCCCCCCEE
Q ss_conf             9879997565557799--99999960---998599981788899234---54341--59965997555666345786789
Q 029656           32 NMRILVTGGAGFIGSH--LVDKLMEN---EKNEVIVVDNYFTGSKDN---LRKWI--GHPRFELIRHDVTEPLLIEVDQI  101 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~--l~~~L~~~---~~~~v~~~~r~~~~~~~~---~~~~~--~~~~~~~~~~D~~~~~~~~~d~v  101 (190)
                      .||+.|.| +|.+|..  +...|+..   .+.++.++|++.......   +....  .....+....+-.++++.+.|+|
T Consensus         2 ~mKI~iIG-aGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~V   80 (171)
T d1obba1           2 SVKIGIIG-AGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFV   80 (171)
T ss_dssp             CCEEEEET-TTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCEE
T ss_conf             96799989-78788689999999854536898899996893078999999999888629970899707802204678767


Q ss_pred             EECCCCCCCCCCCCCC------------------------HHHHHHHHHHHHHHHHHHHHCCC--EEEEEE
Q ss_conf             9816887885212580------------------------56899877999999999987399--099995
Q 029656          102 YHLACPASPIFYKYNP------------------------VKTIKTNVIGTLNMLGLAKRVGA--RILLTS  146 (190)
Q Consensus       102 i~~a~~~~~~~~~~~~------------------------~~~~~~n~~~~~~l~~~~~~~~~--~ii~~S  146 (190)
                      ++.++.........+.                        ......|+.....+++.+++...  .++.+|
T Consensus        81 v~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~T  151 (171)
T d1obba1          81 INTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAA  151 (171)
T ss_dssp             EECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             EEECCCCCCCCEEEEHHCCHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             64035566212011020024344235888641477777620342341999999999999889684999977

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.046  Score=26.59  Aligned_cols=48  Identities=15%  Similarity=0.175  Sum_probs=38.8

Q ss_pred             HHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf             0000002798799975655577999999996099859998178889923
Q 029656           24 RFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD   72 (190)
Q Consensus        24 ~~~~~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~   72 (190)
                      ......+.|++++|.|.+..+|+.++..|.++ +..|..+........+
T Consensus        31 ~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~-gatVt~~~~~t~~l~~   78 (170)
T d1a4ia1          31 KETGVPIAGRHAVVVGRSKIVGAPMHDLLLWN-NATVTTCHSKTAHLDE   78 (170)
T ss_dssp             HTTTCCCTTCEEEEECCCTTTHHHHHHHHHHT-TCEEEEECTTCSSHHH
T ss_pred             HHHCCCCCCCEEEEEECCCCCCHHHHHHHHHC-CCCEEEEECCCCCHHH
T ss_conf             98193510025899851776663999998754-6866898504652788

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.04  E-value=0.052  Score=26.31  Aligned_cols=37  Identities=22%  Similarity=0.226  Sum_probs=31.8

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             987999756555779999999960998599981788899
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      .++++|.| +|+||-.++..|... |.+|.++.+.+.-.
T Consensus        23 p~~~vIiG-~G~ig~E~A~~l~~l-G~~Vtii~~~~~~l   59 (122)
T d1v59a2          23 PKRLTIIG-GGIIGLEMGSVYSRL-GSKVTVVEFQPQIG   59 (122)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSSSSS
T ss_pred             CCEEEEEC-CCCHHHHHHHHHHHH-CCCEEEEEECCCCC
T ss_conf             98399998-770688999999860-85146898556323

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.98  E-value=0.016  Score=29.03  Aligned_cols=37  Identities=27%  Similarity=0.448  Sum_probs=31.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf             879997565557799999999609985999817888992
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK   71 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~   71 (190)
                      |+|-|.| .|.+|..+++.|++. |++|++.+|+.++..
T Consensus         2 MkIGvIG-lG~MG~~ma~~L~~~-G~~V~~~dr~~~~~~   38 (178)
T d1pgja2           2 MDVGVVG-LGVMGANLALNIAEK-GFKVAVFNRTYSKSE   38 (178)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSHHHHH
T ss_pred             CEEEEEE-EHHHHHHHHHHHHHC-CCEEEEEECCHHHHH
T ss_conf             8999991-619899999999978-995999979989999

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.97  E-value=0.054  Score=26.23  Aligned_cols=37  Identities=19%  Similarity=0.260  Sum_probs=31.9

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             798799975655577999999996099859998178889
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      ..++++|.| +|++|-.++..|... |.+|+++.|.+.-
T Consensus        21 ~p~~v~IiG-gG~ig~E~A~~l~~~-G~~Vtlve~~~~i   57 (117)
T d1ebda2          21 VPKSLVVIG-GGYIGIELGTAYANF-GTKVTILEGAGEI   57 (117)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESSSSS
T ss_pred             CCCEEEEEC-CCCCCEEEEEEECCC-CCEEEEEEECCEE
T ss_conf             698699999-986521644300125-5179999731300

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.96  E-value=0.068  Score=25.70  Aligned_cols=39  Identities=21%  Similarity=0.372  Sum_probs=33.4

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             27987999756555779999999960998599981788899
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      ...++++|.| +|++|-.++..|... |.+|.++.+.+.-.
T Consensus        33 ~~~k~v~VIG-gG~iG~E~A~~l~~~-g~~Vtvie~~~~~l   71 (133)
T d1q1ra2          33 IADNRLVVIG-GGYIGLEVAATAIKA-NMHVTLLDTAARVL   71 (133)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSSSTT
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHH-CCCEEEEEECCCCC
T ss_conf             2188899999-833789998998762-72103642055344

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.96  E-value=0.12  Score=24.42  Aligned_cols=76  Identities=9%  Similarity=-0.028  Sum_probs=46.5

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC------CCCCCCEEEE
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663------4578678998
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP------LLIEVDQIYH  103 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~------~~~~~d~vi~  103 (190)
                      ..+.+|+|+| .|.+|...++.+...+..+|++++++.++.+. ..++....-++....|....      ...++|++|.
T Consensus        28 ~~g~tVlI~G-~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~-Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~  105 (176)
T d1d1ta2          28 KPGSTCVVFG-LGGVGLSVIMGCKSAGASRIIGIDLNKDKFEK-AMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFE  105 (176)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHH-HHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEE
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHHHHCCCCEEEEECCCHHHHHH-HHHCCCCEEECCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf             9999999988-77265889999997498458984371789999-985478378776654037889998732543208999


Q ss_pred             CCCC
Q ss_conf             1688
Q 029656          104 LACP  107 (190)
Q Consensus       104 ~a~~  107 (190)
                      +.+.
T Consensus       106 ~~g~  109 (176)
T d1d1ta2         106 VIGH  109 (176)
T ss_dssp             CSCC
T ss_pred             ECCC
T ss_conf             0785

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=93.94  E-value=0.057  Score=26.09  Aligned_cols=39  Identities=18%  Similarity=0.146  Sum_probs=33.0

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             02798799975655577999999996099859998178889
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      ...++++.|.| .|.||+.+++.+... |.++...++....
T Consensus        44 ~l~g~tvgIiG-~G~IG~~va~~l~~f-g~~v~~~d~~~~~   82 (191)
T d1gdha1          44 KLDNKTLGIYG-FGSIGQALAKRAQGF-DMDIDYFDTHRAS   82 (191)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEECSSCCC
T ss_pred             EECCCCEEEEE-CCCCHHHHHHHHHHH-CCCCCCCCCCCCC
T ss_conf             32366247860-121048999999753-1333224664443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.89  E-value=0.043  Score=26.75  Aligned_cols=75  Identities=17%  Similarity=0.258  Sum_probs=49.3

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCC--CCCCCCCCCEEEECCCCC
Q ss_conf             798799975655577999999996099859998178889923454341599659975556--663457867899816887
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDV--TEPLLIEVDQIYHLACPA  108 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~--~~~~~~~~d~vi~~a~~~  108 (190)
                      ...+++|.| .|-.|..-++..... |.+|.++|.+.....+ +..... ..+.....+-  ......+.|+||.++-.+
T Consensus        31 ~pa~V~ViG-aGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~-l~~~~~-~~~~~~~~~~~~l~~~~~~aDivI~aalip  106 (168)
T d1pjca1          31 KPGKVVILG-GGVVGTEAAKMAVGL-GAQVQIFDINVERLSY-LETLFG-SRVELLYSNSAEIETAVAEADLLIGAVLVP  106 (168)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEESCHHHHHH-HHHHHG-GGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECCHHHHHH-HHHHHC-CCCEEEHHHHHHHHHHHCCCCEEEEEEECC
T ss_conf             870799988-885999999997408-9899997376889999-998516-651442222114777630576899820218


Q ss_pred             C
Q ss_conf             8
Q 029656          109 S  109 (190)
Q Consensus       109 ~  109 (190)
                      .
T Consensus       107 G  107 (168)
T d1pjca1         107 G  107 (168)
T ss_dssp             T
T ss_pred             C
T ss_conf             8

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.76  E-value=0.071  Score=25.60  Aligned_cols=37  Identities=22%  Similarity=0.283  Sum_probs=31.7

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             987999756555779999999960998599981788899
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      .++++|.| +|++|-.++..|.+. |.+|.++.|...-.
T Consensus        21 p~~vvIiG-gG~ig~E~A~~l~~~-G~~Vtlve~~~~~l   57 (116)
T d1gesa2          21 PERVAVVG-AGYIGVELGGVINGL-GAKTHLFEMFDAPL   57 (116)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSSSSS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHCC-CCEEEEEEECCHHH
T ss_conf             97899988-972357778875426-63899984032333

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=93.74  E-value=0.062  Score=25.90  Aligned_cols=38  Identities=18%  Similarity=0.113  Sum_probs=32.9

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             0279879997565557799999999609985999817888
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ...++++.|.| .|.||+.+++.+... +.+|...++...
T Consensus        41 ~l~~~~vgiiG-~G~IG~~va~~l~~f-g~~v~~~d~~~~   78 (188)
T d2naca1          41 DLEAMHVGTVA-AGRIGLAVLRRLAPF-DVHLHYTDRHRL   78 (188)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHGGG-TCEEEEECSSCC
T ss_pred             ECCCCCEEECC-CCCCCHHHHHHHHCC-CCEEEEEEECCC
T ss_conf             51565436315-524410355421225-856888740122

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.68  E-value=0.13  Score=24.14  Aligned_cols=73  Identities=16%  Similarity=0.048  Sum_probs=43.9

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCC-CC--------CCCCCCE
Q ss_conf             27987999756555779999999960998599981788899234543415996599755566-63--------4578678
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVT-EP--------LLIEVDQ  100 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~-~~--------~~~~~d~  100 (190)
                      ..+.+|+|.|+ |.+|...++.+...+...|++.+++..+. +...++. ..  .++..+-. +.        ...++|+
T Consensus        27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~-~~ak~lG-a~--~~i~~~~~~~~~~~~~~~~~~~g~D~  101 (176)
T d2fzwa2          27 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKF-ARAKEFG-AT--ECINPQDFSKPIQEVLIEMTDGGVDY  101 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHHT-CS--EEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CCCCEEEEECC-HHHHHHHHHHHHHHHCCCEEEECCCHHHH-HHHHHHC-CC--EEEECCCHHHHHHHHHHHHCCCCCCE
T ss_conf             99999999563-56789999999998508469973608889-9999839-95--79817740668999999972999727


Q ss_pred             EEECCCC
Q ss_conf             9981688
Q 029656          101 IYHLACP  107 (190)
Q Consensus       101 vi~~a~~  107 (190)
                      +|.+.|.
T Consensus       102 vid~~G~  108 (176)
T d2fzwa2         102 SFECIGN  108 (176)
T ss_dssp             EEECSCC
T ss_pred             EEECCCC
T ss_conf             6554887

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=93.68  E-value=0.052  Score=26.30  Aligned_cols=75  Identities=12%  Similarity=0.161  Sum_probs=47.6

Q ss_pred             HHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEE
Q ss_conf             00000027987999756555779999999960998599981788899234543415996599755566634578678998
Q 029656           24 RFSKFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYH  103 (190)
Q Consensus        24 ~~~~~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~  103 (190)
                      .....++.|++++|.| -|++|+-+++.+... |..|+++..++-   ..++...  +.+.+...   +++....|++|-
T Consensus        15 r~t~~~laGk~vvV~G-YG~vGrG~A~~~rg~-Ga~V~V~E~DPi---~alqA~m--dGf~v~~~---~~a~~~aDi~vT   84 (163)
T d1v8ba1          15 RATDFLISGKIVVICG-YGDVGKGCASSMKGL-GARVYITEIDPI---CAIQAVM--EGFNVVTL---DEIVDKGDFFIT   84 (163)
T ss_dssp             HHHCCCCTTSEEEEEC-CSHHHHHHHHHHHHH-TCEEEEECSCHH---HHHHHHT--TTCEECCH---HHHTTTCSEEEE
T ss_pred             HHHCCEECCCEEEEEC-CCCCCHHHHHHHHHC-CCEEEEEECCCH---HHHHHHH--CCCCCCCH---HHCCCCCCEEEE
T ss_conf             8727325487899953-453245689999739-899999835753---1688986--58815764---571242769997


Q ss_pred             CCCCC
Q ss_conf             16887
Q 029656          104 LACPA  108 (190)
Q Consensus       104 ~a~~~  108 (190)
                      +.|..
T Consensus        85 aTGn~   89 (163)
T d1v8ba1          85 CTGNV   89 (163)
T ss_dssp             CCSSS
T ss_pred             CCCCC
T ss_conf             57997

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.66  E-value=0.045  Score=26.64  Aligned_cols=36  Identities=19%  Similarity=0.191  Sum_probs=30.1

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             02798799975655577999999996099859998178
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      .+++++|.|-| .|-+|+++++.|.+. |..|+.++..
T Consensus        33 ~L~gktvaIqG-fGnVG~~~A~~L~e~-Gakvv~vsD~   68 (293)
T d1hwxa1          33 GFGDKTFAVQG-FGNVGLHSMRYLHRF-GAKCVAVGES   68 (293)
T ss_dssp             SSTTCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEEEET
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECC
T ss_conf             87898899989-889999999999987-9989999845

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=93.63  E-value=0.14  Score=24.09  Aligned_cols=36  Identities=19%  Similarity=0.198  Sum_probs=30.6

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             02798799975655577999999996099859998178
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      .+++++|.|-| -|-+|+++++.|.+. |..|+.++..
T Consensus        28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~-Gakvv~vsD~   63 (242)
T d1v9la1          28 GIEGKTVAIQG-MGNVGRWTAYWLEKM-GAKVIAVSDI   63 (242)
T ss_dssp             CCTTCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEEECS
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECC
T ss_conf             97999999989-889999999999976-9837996065

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=93.62  E-value=0.07  Score=25.62  Aligned_cols=99  Identities=13%  Similarity=0.167  Sum_probs=49.1

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHH-CCCCEEEEE-CCCCCCCHHHHHHHHCCCCEEEEECC----CCCCCCCCCCEEEE
Q ss_conf             2798799975655577999999996-099859998-17888992345434159965997555----66634578678998
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLME-NEKNEVIVV-DNYFTGSKDNLRKWIGHPRFELIRHD----VTEPLLIEVDQIYH  103 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~-~~~~~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~D----~~~~~~~~~d~vi~  103 (190)
                      .+..++-|.| +|.+|+.+...+++ ....++.++ +|+...........   ..+.+....    +.+.++.++|+||.
T Consensus         2 ~kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~---~~i~~~~~~~d~l~~~~~~~~iDiVf~   77 (157)
T d1nvmb1           2 NQKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQR---MGVTTTYAGVEGLIKLPEFADIDFVFD   77 (157)
T ss_dssp             CSCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHH---TTCCEESSHHHHHHHSGGGGGEEEEEE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEEEECCHHCCCHHHHHH---CCCCCCCCCEEEEEECCCCCCCCEEEE
T ss_conf             9876799986-859999999999961986559999855332031035665---397400056156650245554688998


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             168878852125805689987799999999998739909999566
Q 029656          104 LACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS  148 (190)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~  148 (190)
                      +... .               ........-.+.+.|+.+|-.|+.
T Consensus        78 ATpa-g---------------~h~~~~~~~~aa~~G~~VID~s~a  106 (157)
T d1nvmb1          78 ATSA-S---------------AHVQNEALLRQAKPGIRLIDLTPA  106 (157)
T ss_dssp             CSCH-H---------------HHHHHHHHHHHHCTTCEEEECSTT
T ss_pred             CCCC-H---------------HHHHHHHHHHHHHCCCEEEECCCC
T ss_conf             2784-3---------------588818889998759889981462

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.56  E-value=0.066  Score=25.75  Aligned_cols=37  Identities=14%  Similarity=0.212  Sum_probs=31.9

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             798799975655577999999996099859998178889
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      ..++++|.| +|++|-.++..|... |.+|+++.|...-
T Consensus        21 ~p~~v~IiG-gG~iG~E~A~~l~~~-g~~Vtlv~~~~~i   57 (117)
T d1onfa2          21 ESKKIGIVG-SGYIAVELINVIKRL-GIDSYIFARGNRI   57 (117)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHTT-TCEEEEECSSSSS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHC-CCCCEEEEHHCCC
T ss_conf             898799989-965799999999860-6553111010021

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=93.53  E-value=0.068  Score=25.70  Aligned_cols=37  Identities=22%  Similarity=0.288  Sum_probs=32.4

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             279879997565557799999999609985999817888
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      +.++++.|.| .|.||+.+++.+... |.+|+..++...
T Consensus        41 l~gk~vgIiG-~G~IG~~va~~l~~f-g~~V~~~d~~~~   77 (197)
T d1j4aa1          41 VRDQVVGVVG-TGHIGQVFMQIMEGF-GAKVITYDIFRN   77 (197)
T ss_dssp             GGGSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCC
T ss_pred             CCCCEEEEEC-CCCCCHHHHHHHHHH-CCCCCCCCCCCC
T ss_conf             5687677840-443315677767640-122223575432

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.065  Score=25.81  Aligned_cols=77  Identities=17%  Similarity=0.176  Sum_probs=46.9

Q ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH----------------------HHHCCCCEEE
Q ss_conf             002798799975655577999999996099859998178889923454----------------------3415996599
Q 029656           28 FFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLR----------------------KWIGHPRFEL   85 (190)
Q Consensus        28 ~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~----------------------~~~~~~~~~~   85 (190)
                      ..+...+|+|.| .|++|.++++.|+..|-.++.++|...-...+.-+                      .+.+...+..
T Consensus        33 ~~l~~~kVlvvG-~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~  111 (426)
T d1yovb1          33 FLLDTCKVLVIG-AGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVP  111 (426)
T ss_dssp             HHHHHCCEEEEC-SSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEE
T ss_pred             HHHHCCEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEE
T ss_conf             998669699989-7889999999999839976999979995631216250589557686899999999985199981575


Q ss_pred             EECCCCCC---CCCCCCEEEECC
Q ss_conf             75556663---457867899816
Q 029656           86 IRHDVTEP---LLIEVDQIYHLA  105 (190)
Q Consensus        86 ~~~D~~~~---~~~~~d~vi~~a  105 (190)
                      ...++.+.   -..++|+||.+.
T Consensus       112 ~~~~i~~~~~~~~~~~DlVi~~~  134 (426)
T d1yovb1         112 HFNKIQDFNDTFYRQFHIIVCGL  134 (426)
T ss_dssp             ECSCGGGBCHHHHTTCSEEEECC
T ss_pred             EECCCCCHHHHHHHHCCHHEECC
T ss_conf             41335613799987524010036

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.076  Score=25.43  Aligned_cols=37  Identities=16%  Similarity=0.143  Sum_probs=31.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             987999756555779999999960998599981788899
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      .++++|.| +|++|-.++..|... |.+|+++.|.+.-.
T Consensus        22 pk~vvIvG-gG~iG~E~A~~l~~~-G~~Vtlv~~~~~~l   58 (125)
T d3grsa2          22 PGRSVIVG-AGYIAVEMAGILSAL-GSKTSLMIRHDKVL   58 (125)
T ss_dssp             CSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSSSSC
T ss_pred             CCEEEEEC-CCCCHHHHHHHHHCC-CCEEEEEEECCCCC
T ss_conf             98799986-883289999987517-85789996045221

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.35  E-value=0.089  Score=25.07  Aligned_cols=37  Identities=5%  Similarity=-0.043  Sum_probs=32.1

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf             798799975655577999999996099859998178889
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTG   69 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~   69 (190)
                      .+++++|.| +|++|-.++..|... +..+.++.+...-
T Consensus        21 ~~~~vvVvG-gG~ig~E~A~~l~~~-g~~vt~i~~~~~~   57 (121)
T d1mo9a2          21 PGSTVVVVG-GSKTAVEYGCFFNAT-GRRTVMLVRTEPL   57 (121)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSCTT
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHC-CHHHEEEECCCHH
T ss_conf             997799999-878999999999740-5010574114211

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.29  E-value=0.11  Score=24.54  Aligned_cols=95  Identities=15%  Similarity=0.138  Sum_probs=50.3

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCC----------------CCC
Q ss_conf             9879997565557799999999609985999817888992345434159965997555666----------------345
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTE----------------PLL   95 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~----------------~~~   95 (190)
                      .++|.|-| -|.||+.+++.+..+...++..+....+...  ...+... .+.....+...                ...
T Consensus         2 ~irIaING-fGRIGR~v~Ral~~~~dieiVaINd~~~~~~--~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (172)
T d2czca2           2 KVKVGVNG-YGTIGKRVAYAVTKQDDMELIGITKTKPDFE--AYRAKEL-GIPVYAASEEFIPRFEKEGFEVAGTLNDLL   77 (172)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEESSCSHH--HHHHHHT-TCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred             CEEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCCCHHH--HHHHHHC-CCEEECCCCCCEEEECCCCCCCCCHHHHHH
T ss_conf             57999989-8788999999997599965999966997589--9875415-850223543100110246754461065563


Q ss_pred             CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             78678998168878852125805689987799999999998739909999566
Q 029656           96 IEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTS  148 (190)
Q Consensus        96 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~ii~~SS~  148 (190)
                      .++|+|+-|.|....                  ..-++...+.|++.|++|+.
T Consensus        78 ~~vDvViEcTG~f~~------------------~~~~~~hl~~G~k~Vi~s~~  112 (172)
T d2czca2          78 EKVDIIVDATPGGIG------------------AKNKPLYEKAGVKAIFQGGE  112 (172)
T ss_dssp             TTCSEEEECCSTTHH------------------HHHHHHHHHHTCEEEECTTS
T ss_pred             CCCCEEEECCCCCCC------------------HHHHHHHHHCCCCEEEECCC
T ss_conf             069899988887778------------------99999999849989998899

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.19  E-value=0.077  Score=25.42  Aligned_cols=36  Identities=25%  Similarity=0.393  Sum_probs=31.5

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             79879997565557799999999609985999817888
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ..++++|.| +|++|-.++..|... |.+|+++.+.+.
T Consensus        31 ~~~~vvIiG-gG~iG~E~A~~l~~~-g~~Vtlv~~~~~   66 (122)
T d1xhca2          31 NSGEAIIIG-GGFIGLELAGNLAEA-GYHVKLIHRGAM   66 (122)
T ss_dssp             HHSEEEEEE-CSHHHHHHHHHHHHT-TCEEEEECSSSC
T ss_pred             CCCCEEEEC-CCHHHHHHHHHHHCC-CCEEEEEECCCC
T ss_conf             188499999-807899999986336-624888704641

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.15  E-value=0.079  Score=25.36  Aligned_cols=38  Identities=26%  Similarity=0.259  Sum_probs=32.4

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             7987999756555779999999960998599981788899
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      ..++++|.| +|+||-.++..|... |.+|+++.|...-.
T Consensus        24 ~p~~~viiG-~G~iglE~A~~~~~~-G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          24 IPKKLVVIG-AGYIGLEMGSVWGRI-GSEVTVVEFASEIV   61 (123)
T ss_dssp             CCSEEEESC-CSHHHHHHHHHHHHH-TCEEEEECSSSSSS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEEECCCCC
T ss_conf             697289986-652788999999853-99179999756447

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.13  E-value=0.17  Score=23.65  Aligned_cols=64  Identities=17%  Similarity=0.212  Sum_probs=45.3

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCC-------CCCEEEE
Q ss_conf             798799975655577999999996099859998178889923454341599659975556663457-------8678998
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI-------EVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~-------~~d~vi~  103 (190)
                      ...+|.|.| +|.+|+-++....+. |+++++.+.+.......+.       -.++.+|..|.+..       ++|+|..
T Consensus        10 ~~~kigIlG-gGQL~rMla~aA~~l-G~~v~v~d~~~~~PA~~va-------~~~i~~~~~d~~~l~~~~~~~~~DviT~   80 (111)
T d1kjqa2          10 AATRVMLLG-SGELGKEVAIECQRL-GVEVIAVDRYADAPAMHVA-------HRSHVINMLDGDALRRVVELEKPHYIVP   80 (111)
T ss_dssp             TCCEEEEES-CSHHHHHHHHHHHTT-TCEEEEEESSTTCGGGGGS-------SEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCCEEEEEE-CCHHHHHHHHHHHHC-CCEEEEECCCCCCCHHHCC-------CEEEECCCCCHHHHHHHHHHHCCCEEEE
T ss_conf             997999993-779899999999988-9989998499998365517-------7689988789999999998627756888

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.07  E-value=0.17  Score=23.59  Aligned_cols=73  Identities=14%  Similarity=0.056  Sum_probs=45.2

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC---------CCCCCCE
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663---------4578678
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP---------LLIEVDQ  100 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~---------~~~~~d~  100 (190)
                      ..+.+|+|.| .|.||...++.+...+...|++.+++.... +...++ .  ....+.....+.         ...++|+
T Consensus        27 ~~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~-~~a~~~-G--a~~~i~~~~~~~~~~~~~~~~~~~G~d~  101 (174)
T d1e3ia2          27 TPGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEKF-PKAKAL-G--ATDCLNPRELDKPVQDVITELTAGGVDY  101 (174)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHT-T--CSEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHHCCCEEEEECCCHHHH-HHHHHH-C--CCCCCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf             9999999977-770788899999983884366543524887-999986-8--8712477541366666676530589748


Q ss_pred             EEECCCC
Q ss_conf             9981688
Q 029656          101 IYHLACP  107 (190)
Q Consensus       101 vi~~a~~  107 (190)
                      +|.+.|.
T Consensus       102 vie~~G~  108 (174)
T d1e3ia2         102 SLDCAGT  108 (174)
T ss_dssp             EEESSCC
T ss_pred             EEEECCC
T ss_conf             9993553

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.06  E-value=0.093  Score=24.98  Aligned_cols=34  Identities=29%  Similarity=0.230  Sum_probs=30.4

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             987999756555779999999960998599981788
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      +|+|+|.| +|.-|...+..|.+. |+.|.++.+..
T Consensus         1 ~KkV~IIG-aG~aGL~aA~~La~~-G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIG-AGVSGLAAAYKLKIH-GLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHTT-SCEEEEECSSS
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCC
T ss_conf             99899989-688999999999868-99899995899

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.71  E-value=0.12  Score=24.34  Aligned_cols=38  Identities=18%  Similarity=0.155  Sum_probs=32.4

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf             7987999756555779999999960998599981788899
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS   70 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~   70 (190)
                      ..++++|.| +|+||-.++..+... |.+|+++.+...-.
T Consensus        25 ~p~~vvIiG-gG~IG~E~A~~~~~~-G~~Vtive~~~~il   62 (125)
T d1ojta2          25 VPGKLLIIG-GGIIGLEMGTVYSTL-GSRLDVVEMMDGLM   62 (125)
T ss_dssp             CCSEEEEES-CSHHHHHHHHHHHHH-TCEEEEECSSSSSS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHCC-CCEEEEEEEECCCC
T ss_conf             697279988-887998787773037-97799998603336

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.66  E-value=0.19  Score=23.40  Aligned_cols=36  Identities=31%  Similarity=0.346  Sum_probs=32.0

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             79879997565557799999999609985999817888
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ..++|+|.| +|..|...+..|.++ |+.|.++.+...
T Consensus        48 ~~k~VvIIG-aGpAGl~aA~~l~~~-G~~v~l~E~~~~   83 (233)
T d1djqa3          48 NKDSVLIVG-AGPSGSEAARVLMES-GYTVHLTDTAEK   83 (233)
T ss_dssp             SCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHH-CCCEEEEEECCC
T ss_conf             785389986-348999999999873-353026852321

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=92.51  E-value=0.13  Score=24.17  Aligned_cols=36  Identities=17%  Similarity=0.276  Sum_probs=29.9

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCC
Q ss_conf             798799975655577999999996099-8599981788
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYF   67 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~   67 (190)
                      .|++|+|.| +|++|-.++..|.+.+. .+|+++.+..
T Consensus         1 ~gkrivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVG-GGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCCEEEEC-CCHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             979599999-6299999999999719898689997777

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=92.49  E-value=0.14  Score=24.00  Aligned_cols=36  Identities=22%  Similarity=0.165  Sum_probs=31.6

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             79879997565557799999999609985999817888
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      +.++|+|.| .|..|..++..|.+. |..|.++.|...
T Consensus         3 ~~~kV~IiG-aG~aGl~~A~~L~~~-G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVG-GSISGLTAALMLRDA-GVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSSSS
T ss_pred             CCCCEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCCC
T ss_conf             999299989-488999999999977-999999928998

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.42  E-value=0.087  Score=25.13  Aligned_cols=33  Identities=21%  Similarity=0.208  Sum_probs=29.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             87999756555779999999960998599981788
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ++++|.| +|+||-.++..|... |.+|.++.++.
T Consensus        21 ~~vvIIG-gG~iG~E~A~~l~~l-G~~Vtii~~~~   53 (122)
T d1h6va2          21 GKTLVVG-ASYVALECAGFLAGI-GLDVTVMVRSI   53 (122)
T ss_dssp             CSEEEEC-CSHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             CEEEEEC-CCCCHHHHHHHHHHC-CCEEEEEEECH
T ss_conf             8099998-872189999998612-97699997202

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=92.23  E-value=0.1  Score=24.79  Aligned_cols=33  Identities=18%  Similarity=0.410  Sum_probs=29.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             87999756555779999999960998599981788
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      |+|+|.| +|.-|...+..|.+. |++|.++.+..
T Consensus         1 m~V~IIG-aG~aGL~aA~~L~~~-G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVG-GGISGLAVAHHLRSR-GTDAVLLESSA   33 (347)
T ss_dssp             CCEEEEC-CBHHHHHHHHHHHTT-TCCEEEECSSS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCC
T ss_conf             9499999-778999999999868-99899992699

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=92.16  E-value=0.23  Score=22.93  Aligned_cols=76  Identities=21%  Similarity=0.166  Sum_probs=48.0

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCC-HHH-----------------HHHHHCCCCEEEE-ECCC
Q ss_conf             27987999756555779999999960998599981788899-234-----------------5434159965997-5556
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGS-KDN-----------------LRKWIGHPRFELI-RHDV   90 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~-~~~-----------------~~~~~~~~~~~~~-~~D~   90 (190)
                      .+.++|+|.| +|..|...+..|.++ |+.|.++.+....- .-.                 +........+.+. .-++
T Consensus        41 ~~~k~V~IIG-aGPAGL~AA~~la~~-G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~V  118 (179)
T d1ps9a3          41 VQKKNLAVVG-AGPAGLAFAINAAAR-GHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTV  118 (179)
T ss_dssp             SSCCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCC
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHH-CCCEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCEE
T ss_conf             7775899989-659999999999863-24568983367668667788867632017999999998664178299948797


Q ss_pred             CCCCCCCCCEEEECCCC
Q ss_conf             66345786789981688
Q 029656           91 TEPLLIEVDQIYHLACP  107 (190)
Q Consensus        91 ~~~~~~~~d~vi~~a~~  107 (190)
                      +.....+.|.||...|.
T Consensus       119 t~~~~~~~d~vilAtG~  135 (179)
T d1ps9a3         119 TADQLQAFDETILASGI  135 (179)
T ss_dssp             CSSSSCCSSEEEECCCE
T ss_pred             CCCCCCCCEEEEEEECC
T ss_conf             33323133038996568

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.10  E-value=0.23  Score=22.91  Aligned_cols=34  Identities=21%  Similarity=0.403  Sum_probs=26.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             87999756555779999999960998599981788
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      -||-|-| .|.||+.+++.+.+++..++..+....
T Consensus         2 IKVaING-fGRIGR~v~Ral~~~~dievVaInd~~   35 (178)
T d1b7go1           2 VNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTS   35 (178)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSS
T ss_pred             EEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             4999978-987999999999769997799997899

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.04  E-value=0.1  Score=24.80  Aligned_cols=37  Identities=14%  Similarity=0.082  Sum_probs=31.1

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECCCCCC
Q ss_conf             7987999756555779999999960998-59998178889
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKN-EVIVVDNYFTG   69 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~-~v~~~~r~~~~   69 (190)
                      -++||+|.| +|..|...+..|.+. |+ .|.++.++...
T Consensus         3 ~~~kVaIIG-aGpaGl~aA~~l~~~-G~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLG-AGPASISCASFLARL-GYSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEEC-CSHHHHHHHHHHHHT-TCCCEEEEESSSSC
T ss_pred             CCCEEEEEC-CHHHHHHHHHHHHHC-CCCEEEEEEECCCC
T ss_conf             999799999-709999999999987-99859999816844

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=91.95  E-value=0.16  Score=23.70  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=31.0

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             7987999756555779999999960998599981788
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      +.++|+|.| +|..|...+..|.++ |++|.++.+..
T Consensus        29 ~pkkV~IIG-aG~aGLsaA~~L~~~-G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVG-AGMAGLSAAYVLAGA-GHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEEC-CBHHHHHHHHHHHHH-TCEEEEECSSS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCC
T ss_conf             999699989-888999999999878-99889995899

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=91.92  E-value=0.066  Score=25.76  Aligned_cols=38  Identities=16%  Similarity=0.261  Sum_probs=32.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
Q ss_conf             8799975655577999999996099859998178889923
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKD   72 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~   72 (190)
                      .+|-+.| .|.+|..+++.|++. |+.|++.+|+.++...
T Consensus         3 ~nIg~IG-lG~MG~~mA~~L~~~-G~~V~v~dr~~~~~~~   40 (176)
T d2pgda2           3 ADIALIG-LAVMGQNLILNMNDH-GFVVCAFNRTVSKVDD   40 (176)
T ss_dssp             BSEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSTHHHHH
T ss_pred             CCEEEEE-EHHHHHHHHHHHHHC-CCEEEEECCCHHHHHH
T ss_conf             8599996-959999999999978-9969998199899999

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=91.63  E-value=0.15  Score=23.95  Aligned_cols=33  Identities=21%  Similarity=0.352  Sum_probs=29.4

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             79997565557799999999609985999817888
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        34 ~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      .|+|.| +|.+|..++..|.++ |.+|.++++...
T Consensus         6 DvvIIG-aGi~Gls~A~~La~~-G~~V~vlE~~~~   38 (276)
T d1ryia1           6 EAVVIG-GGIIGSAIAYYLAKE-NKNTALFESGTM   38 (276)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSST
T ss_pred             CEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCCC
T ss_conf             799999-689999999999988-995899958999

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.26  E-value=0.29  Score=22.38  Aligned_cols=73  Identities=14%  Similarity=0.054  Sum_probs=44.2

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCC---------CCCCCCE
Q ss_conf             2798799975655577999999996099859998178889923454341599659975556663---------4578678
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEP---------LLIEVDQ  100 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~---------~~~~~d~  100 (190)
                      ..+.+|+|.| .|.+|...+..+...++..|++++++..+.+. ..++   .--+++...-.+.         ...++|+
T Consensus        27 k~g~~VlI~G-~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~-a~~~---GAd~~in~~~~~~~~~~~~~~~~~~G~d~  101 (175)
T d1cdoa2          27 EPGSTCAVFG-LGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEK-AKVF---GATDFVNPNDHSEPISQVLSKMTNGGVDF  101 (175)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHH-HHHT---TCCEEECGGGCSSCHHHHHHHHHTSCBSE
T ss_pred             CCCCEEEEEE-CCCCCCHHHHHHHHHHHCHHEEECCHHHHHHH-HHHC---CCCEEECCCCCCHHHHHHHHHHCCCCCCE
T ss_conf             9999999983-68850068999999740212024354778788-9972---98389758775215777777611588624


Q ss_pred             EEECCCC
Q ss_conf             9981688
Q 029656          101 IYHLACP  107 (190)
Q Consensus       101 vi~~a~~  107 (190)
                      +|.+.|.
T Consensus       102 vid~~G~  108 (175)
T d1cdoa2         102 SLECVGN  108 (175)
T ss_dssp             EEECSCC
T ss_pred             EEEECCC
T ss_conf             4341587

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.20  E-value=0.29  Score=22.35  Aligned_cols=40  Identities=20%  Similarity=0.217  Sum_probs=33.1

Q ss_pred             CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             000279879997565557799999999609985999817888
Q 029656           27 KFFQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        27 ~~~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      .....++++.|.| .|.||+.+++.+... +.+|...++...
T Consensus        39 ~~~l~~k~vgiiG-~G~IG~~va~~~~~f-g~~v~~~d~~~~   78 (184)
T d1ygya1          39 GTEIFGKTVGVVG-LGRIGQLVAQRIAAF-GAYVVAYDPYVS   78 (184)
T ss_dssp             BCCCTTCEEEEEC-CSHHHHHHHHHHHTT-TCEEEEECTTSC
T ss_pred             CCCCCCEEEEECC-CCCHHHHHHHHHHHC-CCEEEEECCCCC
T ss_conf             5212201454203-531157888876405-523774068888

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=90.84  E-value=0.17  Score=23.54  Aligned_cols=33  Identities=36%  Similarity=0.642  Sum_probs=28.1

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             7999756555779999999960998599981788
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        34 ~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      +|+|.| +|.+|..++..|.+++...|.++++..
T Consensus         3 dViIIG-aGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEEC-CSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEEC-CCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             899989-489999999999976998189996888

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.71  E-value=0.24  Score=22.77  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=28.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCC-CCEEEEECCCC
Q ss_conf             879997565557799999999609-98599981788
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~-~~~v~~~~r~~   67 (190)
                      |||+|.| +|++|-.++..|.+.+ ..+|+++.|..
T Consensus         1 ~KVvIIG-gG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLG-SSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEEC-SSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             9799999-7299999999998559998599994788

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=90.65  E-value=0.29  Score=22.42  Aligned_cols=37  Identities=19%  Similarity=0.255  Sum_probs=30.4

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CCEEEEECCCCC
Q ss_conf             79879997565557799999999609-985999817888
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVDNYFT   68 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~-~~~v~~~~r~~~   68 (190)
                      ..++|+|.| +|.-|...+..|++++ ++.|.++.|+..
T Consensus         3 ~~KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           3 TIRKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             SCCEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             998699989-59999999999998298998899978999

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=90.64  E-value=0.33  Score=22.06  Aligned_cols=36  Identities=19%  Similarity=0.104  Sum_probs=27.9

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             27987999756555779999999960998599981788
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      .++++|+|.| +|.-|..++..|... +.+++...|+.
T Consensus        30 f~gK~VlVVG-~g~Sa~dia~~l~~~-ak~v~~~~~r~   65 (107)
T d2gv8a2          30 FVGESVLVVG-GASSANDLVRHLTPV-AKHPIYQSLLG   65 (107)
T ss_dssp             GTTCCEEEEC-SSHHHHHHHHHHTTT-SCSSEEEECTT
T ss_pred             CCCCEEEEEC-CCCCHHHHHHHHHHH-CCEEEEEEECC
T ss_conf             5997699988-898799999999975-59899999648

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.60  E-value=0.24  Score=22.85  Aligned_cols=37  Identities=22%  Similarity=0.363  Sum_probs=29.8

Q ss_pred             CCCEEEEEC-CCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             798799975-65557799999999609985999817888
Q 029656           31 SNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        31 ~~~~vlItG-a~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      .++.++|.+ +.||||..++..|.+. |++|.++.+...
T Consensus        38 ~~~~vvi~d~ggg~ig~e~A~~la~~-G~~Vtlv~~~~~   75 (156)
T d1djqa2          38 IGKRVVILNADTYFMAPSLAEKLATA-GHEVTIVSGVHL   75 (156)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHT-TCEEEEEESSCT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCC
T ss_conf             38726999659974799999999975-996999943774

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=90.53  E-value=0.093  Score=24.98  Aligned_cols=64  Identities=13%  Similarity=0.035  Sum_probs=42.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCC------CCCCEEEECC
Q ss_conf             879997565557799999999609985999817888992345434159965997555666345------7867899816
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLL------IEVDQIYHLA  105 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~------~~~d~vi~~a  105 (190)
                      +.++|.| .|-+|+.+++.|.   ++.+.+++.+...    ...+. ...+.++.+|..+++.      .+.+.++-+.
T Consensus         1 kHivI~G-~g~~g~~l~~~L~---~~~i~vi~~d~~~----~~~~~-~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~   70 (129)
T d2fy8a1           1 RHVVICG-WSESTLECLRELR---GSEVFVLAEDENV----RKKVL-RSGANFVHGDPTRVSDLEKANVRGARAVIVNL   70 (129)
T ss_dssp             CCEEEES-CCHHHHHHHHTSC---GGGEEEEESCTTH----HHHHH-HTTCEEEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred             CEEEEEC-CCHHHHHHHHHHC---CCCCEEEECCHHH----HHHHH-HCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEC
T ss_conf             9899989-8889999999975---7998899826488----89998-62861125654777889774351386987742

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.37  E-value=0.35  Score=21.93  Aligned_cols=37  Identities=16%  Similarity=0.093  Sum_probs=29.6

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             279879997565557799999999609985999817888
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ..+.+|+|.|+ |.+|...++.+... |.+|+++++++.
T Consensus        26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~-G~~Vi~~~~~~~   62 (166)
T d1llua2          26 RPGQWVAISGI-GGLGHVAVQYARAM-GLHVAAIDIDDA   62 (166)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHT-TCEEEEEESCHH
T ss_pred             CCCCEEEEEEC-CCCHHHHHHHHHHC-CCCCCEECCHHH
T ss_conf             99998999415-60178999999873-986512201046

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.00  E-value=0.22  Score=23.02  Aligned_cols=33  Identities=18%  Similarity=0.451  Sum_probs=29.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             87999756555779999999960998599981788
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ..++|.| +|.-|..+++.|.+. |..|.++.++.
T Consensus         2 ~dv~IIG-aG~sGl~~A~~L~~~-g~~V~iiEk~~   34 (298)
T d1i8ta1           2 YDYIIVG-SGLFGAVCANELKKL-NKKVLVIEKRN   34 (298)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHGGG-TCCEEEECSSS
T ss_pred             CCEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCC
T ss_conf             6599989-759999999999968-99679998899

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=89.79  E-value=0.27  Score=22.57  Aligned_cols=33  Identities=24%  Similarity=0.396  Sum_probs=29.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             79997565557799999999609985999817888
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        34 ~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      -|+|.| +|..|..++..|.++ |..|.++++...
T Consensus         5 DvvIIG-aGi~Gls~A~~La~~-G~~V~viE~~~~   37 (281)
T d2gf3a1           5 DVIVVG-AGSMGMAAGYQLAKQ-GVKTLLVDAFDP   37 (281)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSCS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCCC
T ss_conf             999999-479999999999988-995899967898

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=89.76  E-value=0.22  Score=23.00  Aligned_cols=33  Identities=21%  Similarity=0.343  Sum_probs=26.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHHCC-CCEEEEEC
Q ss_conf             9879997565557799999999609-98599981
Q 029656           32 NMRILVTGGAGFIGSHLVDKLMENE-KNEVIVVD   64 (190)
Q Consensus        32 ~~~vlItGa~G~iG~~l~~~L~~~~-~~~v~~~~   64 (190)
                      ++++.|.|+||.||+.....+.+.. ..+|.++.
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Ls   34 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALV   34 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf             9769997579699999999999397884899999

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=88.96  E-value=0.3  Score=22.29  Aligned_cols=35  Identities=14%  Similarity=0.166  Sum_probs=29.6

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             0279879997565557799999999609985999817
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      .++++++.|-| .|-+|+++++.|.+. |..|+.+..
T Consensus        33 ~l~g~~v~IQG-fGnVG~~~a~~L~e~-GakvvavsD   67 (255)
T d1bgva1          33 TLVGKTVALAG-FGNVAWGAAKKLAEL-GAKAVTLSG   67 (255)
T ss_dssp             CSTTCEEEECC-SSHHHHHHHHHHHHH-TCEEEEEEE
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEEC
T ss_conf             97899999979-788999999999985-985899965

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=88.66  E-value=0.46  Score=21.33  Aligned_cols=72  Identities=11%  Similarity=0.100  Sum_probs=44.4

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEE
Q ss_conf             7987999756555779999999960-998599981788899234543415996599755566634578678998
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMEN-EKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYH  103 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~-~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~  103 (190)
                      ..+++.|.| +|..+..-++.+... +-.+|.+.+|+..........+.....+.+..++-.+.+..+.|+|+-
T Consensus       127 da~~l~iiG-~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t  199 (340)
T d1x7da_         127 NARKMALIG-NGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITT  199 (340)
T ss_dssp             TCCEEEEEC-CSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHCCCCEEE
T ss_conf             985489973-6287899999986312303568984676778999986420068774554999999740870000

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.61  E-value=0.49  Score=21.19  Aligned_cols=74  Identities=18%  Similarity=-0.035  Sum_probs=43.3

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEEC---CCCCC-----CCCCCCEE
Q ss_conf             27987999756555779999999960998599981788899234543415996599755---56663-----45786789
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRH---DVTEP-----LLIEVDQI  101 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~---D~~~~-----~~~~~d~v  101 (190)
                      ..+.+|+|.| +|.+|...+..+...+...|+++++++...+ ....   ...-+.+..   |+.+.     ...++|.+
T Consensus        24 ~~G~tVlV~G-aG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~-~a~~---~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~v   98 (195)
T d1kola2          24 GPGSTVYVAG-AGPVGLAAAASARLLGAAVVIVGDLNPARLA-HAKA---QGFEIADLSLDTPLHEQIAALLGEPEVDCA   98 (195)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHHH-HHHH---TTCEEEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHHCCCCEEEECCCCHHHH-HHHH---CCCCEEEECCCCCHHHHHHHHHCCCCCEEE
T ss_conf             9999999989-5878999999997605654145304104667-6652---466279707986799999998389983799


Q ss_pred             EECCCCC
Q ss_conf             9816887
Q 029656          102 YHLACPA  108 (190)
Q Consensus       102 i~~a~~~  108 (190)
                      |.+.|..
T Consensus        99 id~vG~~  105 (195)
T d1kola2          99 VDAVGFE  105 (195)
T ss_dssp             EECCCTT
T ss_pred             EECCCCC
T ss_conf             9876642

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=88.20  E-value=0.26  Score=22.65  Aligned_cols=32  Identities=28%  Similarity=0.431  Sum_probs=25.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCC-CCEEEEEC
Q ss_conf             879997565557799999999609-98599981
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENE-KNEVIVVD   64 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~-~~~v~~~~   64 (190)
                      ++|.|.|+||.||+.....+.+.. ..+|.++.
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~ls   35 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALT   35 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             589998879699999999998197771899999

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=87.75  E-value=0.56  Score=20.89  Aligned_cols=78  Identities=19%  Similarity=0.255  Sum_probs=41.1

Q ss_pred             CCCEEEEECCCCHHHHH-HHHHHHHC-C---CCEEEEECCCCCCCH---HHHHHHH--CCCCEEEEECCCCCCCCCCCCE
Q ss_conf             79879997565557799-99999960-9---985999817888992---3454341--5996599755566634578678
Q 029656           31 SNMRILVTGGAGFIGSH-LVDKLMEN-E---KNEVIVVDNYFTGSK---DNLRKWI--GHPRFELIRHDVTEPLLIEVDQ  100 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~-l~~~L~~~-~---~~~v~~~~r~~~~~~---~~~~~~~--~~~~~~~~~~D~~~~~~~~~d~  100 (190)
                      +..||.|.|| |.+|.. ++..++.. .   ..++.++|.+.+...   ..+....  ...........-..+++.+.|+
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~   80 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDF   80 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHHCCCCCCE
T ss_conf             9866999888-721367999999951031687889998388367799999999887873898634761774650589989


Q ss_pred             EEECCCCCC
Q ss_conf             998168878
Q 029656          101 IYHLACPAS  109 (190)
Q Consensus       101 vi~~a~~~~  109 (190)
                      ||..++...
T Consensus        81 Vvitag~~~   89 (167)
T d1u8xx1          81 VMAHIRVGK   89 (167)
T ss_dssp             EEECCCTTH
T ss_pred             EEECCCCCC
T ss_conf             998887678

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.69  E-value=0.37  Score=21.86  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=28.9

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             7999756555779999999960998599981788
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        34 ~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      +|+|.| .|-.|..++..|.+. |..|.++.+..
T Consensus         4 ~V~IvG-aGp~Gl~~A~~L~~~-G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIG-AGPSGLLLGQLLHKA-GIDNVILERQT   35 (292)
T ss_dssp             SEEEEC-CSHHHHHHHHHHHHH-TCCEEEECSSC
T ss_pred             CEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCC
T ss_conf             999989-598999999999978-99999995799

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=87.58  E-value=0.57  Score=20.83  Aligned_cols=39  Identities=21%  Similarity=0.245  Sum_probs=32.7

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCH
Q ss_conf             79879997565557799999999609985999817888992
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK   71 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~   71 (190)
                      ..-+|+|.| .|-.|..-++-.... |..|.++|.+.....
T Consensus        28 ~pa~VvViG-aGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~   66 (183)
T d1l7da1          28 PPARVLVFG-VGVAGLQAIATAKRL-GAVVMATDVRAATKE   66 (183)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHT-TCEEEEECSCSTTHH
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECCHHHHH
T ss_conf             772899985-868999999999986-998999850478899

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=87.46  E-value=0.38  Score=21.78  Aligned_cols=31  Identities=19%  Similarity=0.266  Sum_probs=24.8

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             798799975655577999999996099859998
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVV   63 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~   63 (190)
                      .+++|+|.| +|++|-.++..|.+. +.++.++
T Consensus         2 ~~~~VvIIG-gG~~G~e~A~~l~~~-g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVG-TGLAGVEVAFGLRAS-GWEGNIR   32 (185)
T ss_dssp             CSCEEEEEC-CSHHHHHHHHHHHHT-TCCSEEE
T ss_pred             CCCCEEEEC-CCHHHHHHHHHHHHC-CCCEEEE
T ss_conf             999999999-759999999999976-9944999

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=87.29  E-value=0.6  Score=20.74  Aligned_cols=32  Identities=22%  Similarity=0.464  Sum_probs=24.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             879997565557799999999609985999817
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      ++|-|-| -|.||+.+++.+..++..++..+..
T Consensus         2 ~~VgING-fGRIGR~v~R~l~~~~di~vvaInd   33 (171)
T d1cf2o1           2 KAVAING-YGTVGKRVADAIAQQDDMKVIGVSK   33 (171)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEEE
T ss_pred             EEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             4999983-8588999999998699966999835

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.26  E-value=0.6  Score=20.73  Aligned_cols=35  Identities=23%  Similarity=0.280  Sum_probs=28.3

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             279879997565557799999999609985999817
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      +++++|.|-| -|-+|+++++.|.+..|..|+.+..
T Consensus        30 l~g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vsD   64 (239)
T d1gtma1          30 LKGKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVSD   64 (239)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHHCCCCEEECCC
T ss_conf             6899999979-8899999999999836720020013

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.15  E-value=0.45  Score=21.39  Aligned_cols=33  Identities=21%  Similarity=0.307  Sum_probs=29.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             87999756555779999999960998599981788
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      --|+|.| +|.-|...+..|.+. |..|.++.++.
T Consensus         6 yDviViG-aG~~Gl~~A~~La~~-G~~V~vlE~~~   38 (297)
T d2bcgg1           6 YDVIVLG-TGITECILSGLLSVD-GKKVLHIDKQD   38 (297)
T ss_dssp             CSEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             CCEEEEC-CCHHHHHHHHHHHHC-CCCEEEECCCC
T ss_conf             7889989-698999999999988-99899994899

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.12  E-value=0.61  Score=20.69  Aligned_cols=34  Identities=24%  Similarity=0.338  Sum_probs=29.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCCC
Q ss_conf             8799975655577999999996099-85999817888
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYFT   68 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~~   68 (190)
                      ++|+|.| +|..|..++..|.+. | +.|.++.+...
T Consensus         2 ~~V~IvG-aG~aGl~~A~~L~~~-Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAG-AGIGGLSCALALHQA-GIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHT-TCSEEEEEESSSS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHC-CCCEEEEEECCCC
T ss_conf             8899999-698999999999958-9983999968998

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.89  E-value=0.065  Score=25.78  Aligned_cols=25  Identities=36%  Similarity=0.500  Sum_probs=22.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf             879997565557799999999609985
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNE   59 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~   59 (190)
                      |+|+|.| +|.+|...+..|+++ |+.
T Consensus         1 mkV~VIG-aGi~GlstA~~L~~~-G~~   25 (246)
T d1kifa1           1 MRVVVIG-AGVIGLSTALCIHER-YHS   25 (246)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHHHH-HTT
T ss_pred             CEEEEEC-CHHHHHHHHHHHHHC-CCC
T ss_conf             9899999-519999999999977-997

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=86.74  E-value=0.64  Score=20.57  Aligned_cols=74  Identities=20%  Similarity=0.254  Sum_probs=48.6

Q ss_pred             CCCCCEEEEEC-CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH---HHHHHCCCCEEEEECCCCCCCC-CCCCEEEE
Q ss_conf             02798799975-6555779999999960998599981788899234---5434159965997555666345-78678998
Q 029656           29 FQSNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN---LRKWIGHPRFELIRHDVTEPLL-IEVDQIYH  103 (190)
Q Consensus        29 ~~~~~~vlItG-a~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~-~~~d~vi~  103 (190)
                      ...|++|+=.| |+|++..++++.+...  ..|+.++++..-....   +........+.+..+|+.+... ..+|.|+.
T Consensus        83 i~pG~rVLEiG~GsG~lt~~la~~v~~~--g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~l  160 (250)
T d1yb2a1          83 LRPGMDILEVGVGSGNMSSYILYALNGK--GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIA  160 (250)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHTTS--SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEE
T ss_pred             CCCCCEEEEEEEECCHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCEEEEEEE
T ss_conf             9996978992222749999999970999--58999979899999999999985089816899700201234422543566


Q ss_pred             C
Q ss_conf             1
Q 029656          104 L  104 (190)
Q Consensus       104 ~  104 (190)
                      .
T Consensus       161 d  161 (250)
T d1yb2a1         161 D  161 (250)
T ss_dssp             C
T ss_pred             C
T ss_conf             3

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.61  E-value=0.65  Score=20.53  Aligned_cols=34  Identities=15%  Similarity=0.306  Sum_probs=29.6

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             798799975655577999999996099859998178
Q 029656           31 SNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        31 ~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      +..+|+|.| +|.-|...+..|.+. |+.|.++.++
T Consensus         4 ~~~kViVIG-aG~aGL~aA~~L~~~-G~~V~VlEa~   37 (449)
T d2dw4a2           4 KTGKVIIIG-SGVSGLAAARQLQSF-GMDVTLLEAR   37 (449)
T ss_dssp             CCCEEEEEC-CBHHHHHHHHHHHHT-TCEEEEECSS
T ss_pred             CCCCEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf             999489989-888999999999858-9998999079

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.07  E-value=0.7  Score=20.38  Aligned_cols=113  Identities=12%  Similarity=0.043  Sum_probs=57.4

Q ss_pred             CEEEEECC-CCHHHHHHHHHHHHCC---CCEEEEECCCCCCCH-HHHHHH----H--CCCCEEEEECCCCCCCCCCCCEE
Q ss_conf             87999756-5557799999999609---985999817888992-345434----1--59965997555666345786789
Q 029656           33 MRILVTGG-AGFIGSHLVDKLMENE---KNEVIVVDNYFTGSK-DNLRKW----I--GHPRFELIRHDVTEPLLIEVDQI  101 (190)
Q Consensus        33 ~~vlItGa-~G~iG~~l~~~L~~~~---~~~v~~~~r~~~~~~-~~~~~~----~--~~~~~~~~~~D~~~~~~~~~d~v  101 (190)
                      +|+.|.|| +.+.+..++..+....   ..++.++|++..... +.+...    .  ...........-...+..+.|+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHCCCCCEE
T ss_conf             68999898753579999999973300687789997188658777999999887887659982156527714312789889


Q ss_pred             EECCCCCCCC-CCCC---------------CC--HHHHHHHHHHHHHHHHHHHHCCC-EEEEE
Q ss_conf             9816887885-2125---------------80--56899877999999999987399-09999
Q 029656          102 YHLACPASPI-FYKY---------------NP--VKTIKTNVIGTLNMLGLAKRVGA-RILLT  145 (190)
Q Consensus       102 i~~a~~~~~~-~~~~---------------~~--~~~~~~n~~~~~~l~~~~~~~~~-~ii~~  145 (190)
                      +..++..... +...               .+  ......|+.....+++.+.+... -++++
T Consensus        82 v~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~  144 (169)
T d1s6ya1          82 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLIN  144 (169)
T ss_dssp             EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             EECCCCCCCCCEEHHHHHHHHCCCEECCCCCCCHHHHCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             986556898873134433443382011046731266504209999999999860599849999

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=84.96  E-value=0.8  Score=20.08  Aligned_cols=33  Identities=33%  Similarity=0.417  Sum_probs=28.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             87999756555779999999960998599981788
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ..|+|.| +|..|...+..|.+. |..+.++.+..
T Consensus         8 ~dV~IIG-AG~sGl~~a~~L~~~-G~~v~i~Ek~~   40 (298)
T d1w4xa1           8 VDVLVVG-AGFSGLYALYRLREL-GRSVHVIETAG   40 (298)
T ss_dssp             EEEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSSS
T ss_pred             CCEEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCC
T ss_conf             9899989-659999999999868-98989997689

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=84.49  E-value=0.65  Score=20.53  Aligned_cols=31  Identities=16%  Similarity=0.201  Sum_probs=27.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             799975655577999999996099859998178
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        34 ~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      -|+|.| +|+-|..++.+|.+. |..|.++.+-
T Consensus         4 ~VIVVG-sG~aG~v~A~rLaea-G~~VlvLEaG   34 (367)
T d1n4wa1           4 PAVVIG-TGYGAAVSALRLGEA-GVQTLMLEMG   34 (367)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHT-TCCEEEEESS
T ss_pred             EEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECC
T ss_conf             099967-698999999999779-5919999168

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.93  E-value=0.74  Score=20.25  Aligned_cols=36  Identities=17%  Similarity=0.242  Sum_probs=28.3

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             0279879997565557799999999609985999817
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      .++++++.|-| .|-+|+++++.|.+..|..++.++.
T Consensus        28 ~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vsd   63 (234)
T d1b26a1          28 DPKKATVAVQG-FGNVGQFAALLISQELGSKVVAVSD   63 (234)
T ss_dssp             CTTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf             86889899989-8889999999999866875487645

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=83.79  E-value=0.9  Score=19.80  Aligned_cols=39  Identities=15%  Similarity=0.105  Sum_probs=31.6

Q ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHC--------------------CCCEEEEECCCCC
Q ss_conf             027987999756555779999999960--------------------9985999817888
Q 029656           29 FQSNMRILVTGGAGFIGSHLVDKLMEN--------------------EKNEVIVVDNYFT   68 (190)
Q Consensus        29 ~~~~~~vlItGa~G~iG~~l~~~L~~~--------------------~~~~v~~~~r~~~   68 (190)
                      ..++++|+|.| +|.++.-+++.++..                    +-.+|.++.|+..
T Consensus        36 ~~~gk~VvVIG-gGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~   94 (225)
T d1cjca1          36 DLSCDTAVILG-QGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP   94 (225)
T ss_dssp             CTTSSEEEEES-CSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CCCCCEEEEEC-CCHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHCCCCCEEEEEEECCH
T ss_conf             65676699978-954378787777048876147877399999874059875899777676

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=83.73  E-value=0.75  Score=20.23  Aligned_cols=33  Identities=21%  Similarity=0.062  Sum_probs=29.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             87999756555779999999960998599981788
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      ++|.|.| +|.+|+=++..-... |.++.+++...
T Consensus         2 k~vgIlG-~GQLgrMl~~Aa~~L-G~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLG-NGQLGRMLRQAGEPL-GIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEB-CSHHHHHHHHHHGGG-TEEEEEECTTS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHC-CCEEEEECCCC
T ss_conf             7899974-878999999999986-99799986999

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=83.45  E-value=0.93  Score=19.72  Aligned_cols=104  Identities=15%  Similarity=0.107  Sum_probs=49.0

Q ss_pred             CEEEEECCCCHHHHH-HHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECCCCCCCC
Q ss_conf             879997565557799-9999996099859998178889923454341599659975556663457867899816887885
Q 029656           33 MRILVTGGAGFIGSH-LVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPI  111 (190)
Q Consensus        33 ~~vlItGa~G~iG~~-l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~a~~~~~~  111 (190)
                      +++.|.| .|.+|+. ....+...++.++.+++++...... +....+   +.....|..+....++|.|+-+..+ ...
T Consensus         2 irvgiiG-~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~-~~~~~~---~~~~~~~~~~ll~~~iD~V~I~tp~-~~H   75 (167)
T d1xeaa1           2 LKIAMIG-LGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGT-LATRYR---VSATCTDYRDVLQYGVDAVMIHAAT-DVH   75 (167)
T ss_dssp             EEEEEEC-CCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHH-HHHHTT---CCCCCSSTTGGGGGCCSEEEECSCG-GGH
T ss_pred             EEEEEEC-CCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH-HHHHCC---CCCCCCCHHHHCCCCCCEECCCCCC-CCC
T ss_conf             6999996-979999999999983989689999899999999-997514---3432266888123443200133321-111


Q ss_pred             C--CC----CC----CHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             2--12----58----05689987799999999998739909
Q 029656          112 F--YK----YN----PVKTIKTNVIGTLNMLGLAKRVGARI  142 (190)
Q Consensus       112 ~--~~----~~----~~~~~~~n~~~~~~l~~~~~~~~~~i  142 (190)
                      .  ..    ..    -|.-+..+..-...+.+.+++.+..+
T Consensus        76 ~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~~  116 (167)
T d1xeaa1          76 STLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPL  116 (167)
T ss_dssp             HHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf             22221112211002257878299999999999999839979

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.78  E-value=0.99  Score=19.57  Aligned_cols=31  Identities=23%  Similarity=0.365  Sum_probs=25.6

Q ss_pred             EEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             999756555779999999960998599981788
Q 029656           35 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        35 vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      |+|.| +|.-|...+..|.+. |++|.++.++.
T Consensus         2 ViVIG-aG~aGL~aA~~L~~~-G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVG-GGISGMAAAKLLHDS-GLNVVVLEARD   32 (383)
T ss_dssp             EEEEC-CBHHHHHHHHHHHHT-TCCEEEEESSS
T ss_pred             EEEEC-CCHHHHHHHHHHHHC-CCCEEEEECCC
T ss_conf             89989-788999999999868-99789993499

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.53  E-value=0.99  Score=19.59  Aligned_cols=31  Identities=16%  Similarity=0.134  Sum_probs=26.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf             879997565557799999999609985999817
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r   65 (190)
                      |||||.| +|.--.+++..|.++ ..++++..-
T Consensus         1 MkVLviG-sGgREHAia~~l~~s-~~~v~~~pG   31 (90)
T d1vkza2           1 VRVHILG-SGGREHAIGWAFAKQ-GYEVHFYPG   31 (90)
T ss_dssp             CEEEEEE-CSHHHHHHHHHHHHT-TCEEEEEEC
T ss_pred             CEEEEEC-CCHHHHHHHHHHHCC-CCEEEEECC
T ss_conf             9899988-788999999998469-874999669

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=82.30  E-value=0.36  Score=21.89  Aligned_cols=92  Identities=14%  Similarity=0.006  Sum_probs=49.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCH-HHHHHHHCCCCEEEEECCCCCCCC-CCCCEEEECCCCCCC
Q ss_conf             879997565557799999999609985999817888992-345434159965997555666345-786789981688788
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSK-DNLRKWIGHPRFELIRHDVTEPLL-IEVDQIYHLACPASP  110 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D~~~~~~-~~~d~vi~~a~~~~~  110 (190)
                      .+++|.| +|.+|+.+++.+....++++.++-...+... ..+      ..+.++..|-..... ..++..+-+..    
T Consensus         4 ~~v~I~G-aG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I------~Gi~V~~~~~l~~~~~~~i~iai~~i~----   72 (126)
T d2dt5a2           4 WGLCIVG-MGRLGSALADYPGFGESFELRGFFDVDPEKVGRPV------RGGVIEHVDLLPQRVPGRIEIALLTVP----   72 (126)
T ss_dssp             EEEEEEC-CSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEE------TTEEEEEGGGHHHHSTTTCCEEEECSC----
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCEE------CCEEEECHHHHHHHHHHCCCEEEEECC----
T ss_conf             6299996-89999999972754699579999908657549798------999991478989998516629999089----


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCE-EEEEECCE
Q ss_conf             5212580568998779999999999873990-99995660
Q 029656          111 IFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSE  149 (190)
Q Consensus       111 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-ii~~SS~~  149 (190)
                      .              .....+++.|.+++++ +..++...
T Consensus        73 ~--------------~~~~~I~d~l~~~gIk~I~~f~~~~   98 (126)
T d2dt5a2          73 R--------------EAAQKAADLLVAAGIKGILNFAPVV   98 (126)
T ss_dssp             H--------------HHHHHHHHHHHHHTCCEEEECSSSC
T ss_pred             H--------------HHHHHHHHHHHHCCCCEEEECCCEE
T ss_conf             9--------------9999999999986999874448523

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=81.88  E-value=0.86  Score=19.91  Aligned_cols=77  Identities=9%  Similarity=0.091  Sum_probs=48.0

Q ss_pred             CCCCCEEEEEC-CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHH---HHHHHCCCCEEEEECCCCCCCCCCCCEEEEC
Q ss_conf             02798799975-6555779999999960998599981788899234---5434159965997555666345786789981
Q 029656           29 FQSNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDN---LRKWIGHPRFELIRHDVTEPLLIEVDQIYHL  104 (190)
Q Consensus        29 ~~~~~~vlItG-a~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~d~vi~~  104 (190)
                      ...+.+||=.| |+|.+...+++.+... +.+|+++|.+..-....   +........+.+...|..+......|.++.+
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~-~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~  115 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQP-NVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILN  115 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCS-SCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCC-CCCEEEECCCHHHHHHHHHHHHHHCCCCHHHHCCCHHHCCCCCCCEEEEEE
T ss_conf             6999879993341246799998750478-874697379889999999875764023001101000100235543056774


Q ss_pred             CC
Q ss_conf             68
Q 029656          105 AC  106 (190)
Q Consensus       105 a~  106 (190)
                      ..
T Consensus       116 ~~  117 (225)
T d1im8a_         116 FT  117 (225)
T ss_dssp             SC
T ss_pred             EE
T ss_conf             20

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=81.77  E-value=1.1  Score=19.43  Aligned_cols=32  Identities=25%  Similarity=0.518  Sum_probs=27.5

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-CEEEEECCCC
Q ss_conf             799975655577999999996099-8599981788
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEK-NEVIVVDNYF   67 (190)
Q Consensus        34 ~vlItGa~G~iG~~l~~~L~~~~~-~~v~~~~r~~   67 (190)
                      +|+|.| +|.-|...+..|.+. | +.|.++.++.
T Consensus         2 ~V~IIG-aG~aGL~aA~~L~~~-G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVG-AGMSGISAAKRLSEA-GITDLLILEATD   34 (347)
T ss_dssp             CEEEEC-CBHHHHHHHHHHHHT-TCCCEEEECSSS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHC-CCCCEEEEECCC
T ss_conf             899989-838999999999867-998389997989

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=81.59  E-value=0.54  Score=20.98  Aligned_cols=31  Identities=26%  Similarity=0.455  Sum_probs=23.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCE--EEEECC
Q ss_conf             879997565557799999999609985--999817
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNE--VIVVDN   65 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~--v~~~~r   65 (190)
                      .+|+|.| +|++|-.++..|.+. +.+  ++...+
T Consensus         4 a~VvIIG-gG~~G~e~A~~l~~~-g~~v~i~~~~~   36 (183)
T d1d7ya1           4 APVVVLG-AGLASVSFVAELRQA-GYQGLITVVGD   36 (183)
T ss_dssp             SSEEEEC-CSHHHHHHHHHHHHH-TCCSCEEEEES
T ss_pred             CCEEEEC-CCHHHHHHHHHHHHC-CCCEEEEEEEC
T ss_conf             9999999-629999999999966-99359999826

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.56  E-value=1.1  Score=19.32  Aligned_cols=37  Identities=19%  Similarity=0.115  Sum_probs=28.5

Q ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf             279879997565557799999999609985999817888
Q 029656           30 QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~~   68 (190)
                      ..+.+|+|.| .|.+|...++.+... |.+|++++++..
T Consensus        26 ~~g~~vlv~G-~G~iG~~a~~~a~~~-g~~v~~~~~~~~   62 (168)
T d1rjwa2          26 KPGEWVAIYG-IGGLGHVAVQYAKAM-GLNVVAVDIGDE   62 (168)
T ss_dssp             CTTCEEEEEC-CSTTHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             CCCCEEEEEE-CCCCHHHHHHHHHCC-CCEEECCCCCHH
T ss_conf             9999899940-564115666777327-976713579989

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.18  E-value=1  Score=19.45  Aligned_cols=106  Identities=15%  Similarity=0.098  Sum_probs=52.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEE-CCCCCCCHHHHHHHHCCC-CEEEEECCCCCC-CCCCCCEEEECCCCCC
Q ss_conf             8799975655577999999996099859998-178889923454341599-659975556663-4578678998168878
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVV-DNYFTGSKDNLRKWIGHP-RFELIRHDVTEP-LLIEVDQIYHLACPAS  109 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~-~r~~~~~~~~~~~~~~~~-~~~~~~~D~~~~-~~~~~d~vi~~a~~~~  109 (190)
                      +++.|.| .|.+|+..++.+...++.++..+ +++.+.. ..+....... ...+ .-|..+. ...++|.|+-+... .
T Consensus         2 iki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~-~~~~~~~~~~~~~~~-~~~~~~ll~~~~iD~v~I~tp~-~   77 (184)
T d1ydwa1           2 IRIGVMG-CADIARKVSRAIHLAPNATISGVASRSLEKA-KAFATANNYPESTKI-HGSYESLLEDPEIDALYVPLPT-S   77 (184)
T ss_dssp             EEEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHHTTCCTTCEE-ESSHHHHHHCTTCCEEEECCCG-G
T ss_pred             EEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEEECCCCCC-CCCHHCCCCCCCEEE-CCCHHHHHHCCCCCEEEECCCC-H
T ss_conf             6999996-9799999999998689978999996782003-210101345530121-2767875211321024202320-1


Q ss_pred             CCC--C---CCC-----CHHHHHHHHHHHHHHHHHHHHCCCEE
Q ss_conf             852--1---258-----05689987799999999998739909
Q 029656          110 PIF--Y---KYN-----PVKTIKTNVIGTLNMLGLAKRVGARI  142 (190)
Q Consensus       110 ~~~--~---~~~-----~~~~~~~n~~~~~~l~~~~~~~~~~i  142 (190)
                      ...  .   .+.     -+.-+..+..-...+++.+++.+..+
T Consensus        78 ~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~  120 (184)
T d1ydwa1          78 LHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI  120 (184)
T ss_dssp             GHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             HHCCHHHHHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHCCEE
T ss_conf             0022145553024002205333367999999999999639989

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=80.73  E-value=1.1  Score=19.36  Aligned_cols=72  Identities=17%  Similarity=0.048  Sum_probs=44.3

Q ss_pred             CCCCEEEEEC-CCCHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH-HCCCCEEEEECCCCCCCCC-CCCEEEECCC
Q ss_conf             2798799975-65557799999999609985999817888992345434-1599659975556663457-8678998168
Q 029656           30 QSNMRILVTG-GAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKW-IGHPRFELIRHDVTEPLLI-EVDQIYHLAC  106 (190)
Q Consensus        30 ~~~~~vlItG-a~G~iG~~l~~~L~~~~~~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~~-~~d~vi~~a~  106 (190)
                      ...++||=.| |+|.    +...|++. +.++++++.+..-........ ....++.++.+|+.+.... .+|.|+.+.+
T Consensus        36 ~~~~~vLDiGCG~G~----~~~~l~~~-g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~  110 (246)
T d1y8ca_          36 LVFDDYLDLACGTGN----LTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLD  110 (246)
T ss_dssp             CCTTEEEEETCTTST----THHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTT
T ss_pred             CCCCEEEEEECCCCH----HHHHHHHH-CCCCEEECCCHHHHHHCCCCCCCCCCCCEEECCCHHHHCCCCCCCCCCEEEE
T ss_conf             998939998686889----99999970-9850763322012442002102367631001045454101320234411002

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=80.61  E-value=1.1  Score=19.26  Aligned_cols=31  Identities=23%  Similarity=0.268  Sum_probs=27.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf             799975655577999999996099859998178
Q 029656           34 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNY   66 (190)
Q Consensus        34 ~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~   66 (190)
                      -++|.| +|+-|..++.+|.+. |..|.++.+-
T Consensus         9 dvIVVG-sG~aG~v~A~rLaea-G~~VlvLEaG   39 (370)
T d3coxa1           9 PALVIG-SGYGGAVAALRLTQA-GIPTQIVEMG   39 (370)
T ss_dssp             EEEEEC-CSHHHHHHHHHHHHT-TCCEEEECSS
T ss_pred             CEEEEC-CCHHHHHHHHHHHHC-CCEEEEEECC
T ss_conf             799978-478999999999878-7939999678

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=80.55  E-value=1.1  Score=19.32  Aligned_cols=38  Identities=13%  Similarity=0.171  Sum_probs=29.8

Q ss_pred             CCCCEEEEECCCCHHHHHH-----HHHHHHCCCCEEEEECCCCC
Q ss_conf             2798799975655577999-----99999609985999817888
Q 029656           30 QSNMRILVTGGAGFIGSHL-----VDKLMENEKNEVIVVDNYFT   68 (190)
Q Consensus        30 ~~~~~vlItGa~G~iG~~l-----~~~L~~~~~~~v~~~~r~~~   68 (190)
                      -.+.+|+|+.|.|++|+..     +..|.+. |+.|.++|-+..
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~-G~rVllvD~Dp~   59 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADM-GFDVHLTTSDPA   59 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHHHT-TCCEEEEESCCC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCC
T ss_conf             3797899997999887899999999999978-993899937999

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.30  E-value=1.2  Score=19.08  Aligned_cols=32  Identities=28%  Similarity=0.409  Sum_probs=25.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             87999756555779999999960998599981788
Q 029656           33 MRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYF   67 (190)
Q Consensus        33 ~~vlItGa~G~iG~~l~~~L~~~~~~~v~~~~r~~   67 (190)
                      .||+|.| +|++|-.++..|.+  +.+|.++.+..
T Consensus         1 ~rVvIIG-gG~~G~e~A~~l~~--~~~Vtvv~~~~   32 (167)
T d1xhca1           1 SKVVIVG-NGPGGFELAKQLSQ--TYEVTVIDKEP   32 (167)
T ss_dssp             CEEEEEC-CSHHHHHHHHHHTT--TSEEEEECSSS
T ss_pred             CEEEEEC-CCHHHHHHHHHHHC--CCCEEEEECCC
T ss_conf             9699999-73999999999976--99889996366

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=80.05  E-value=1.3  Score=19.04  Aligned_cols=32  Identities=25%  Similarity=0.443  Sum_probs=21.2

Q ss_pred             CEEEEEC-CC-CHH--HHHHHHHHHHCCCCEEEEECC
Q ss_conf             8799975-65-557--799999999609985999817
Q 029656           33 MRILVTG-GA-GFI--GSHLVDKLMENEKNEVIVVDN   65 (190)
Q Consensus        33 ~~vlItG-a~-G~i--G~~l~~~L~~~~~~~v~~~~r   65 (190)
                      |+|+|++ |+ |++  ...|+++|.++ |++|..+..
T Consensus         1 kkili~~~GtGGHv~~a~al~~~L~~~-G~eV~~i~~   36 (351)
T d1f0ka_           1 KRLMVMAGGTGGHVFPGLAVAHHLMAQ-GWQVRWLGT   36 (351)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHTT-TCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHC-CCEEEEEEE
T ss_conf             979998388589899999999999858-998999995