Citrus Sinensis ID: 029678

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGTA
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MQGQDYIFVREFVAFAASVLIKAWkesddsegdtEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLEslmspevdYTVAITVFWAIEAVYQESFahclepdtntppeLQEVCQRwgndgfgqYCHSLKKIANRLLEKasddlimgkagdDVLKKAEVELIRVLEHEVEFWNMSRGTA
Flexible Loop (DISEMBL)
MQGQDYIFVREFVAFAASVLIKawkesddsegDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVlehevefwnmsrgta
Low Complexity Region (SEG)
MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGTA
Disordered region (IsUnstruct)
****DYIFVREFVAFAASVLIKAWKES****GDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWN******
Disordered Region (DISOPRED)
*QGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAH*********PELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLI**KAGDDVLKKAEVELIRVLEHEVEFWNMSRG**
Disordered Region (DISEMBL)
MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGTA
Disordered Region (DISPRO)
MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSR***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGTA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
Q9SWB6	229	Seed maturation protein P	yes	no	0.931	0.768	0.688	3e-70
Q9ASY9	221	Seed maturation protein P	yes	no	0.925	0.791	0.627	2e-58

>sp|Q9SWB6|PM36_SOYBN Seed maturation protein PM36 OS=Glycine max GN=PM36 PE=2 SV=1

 Score =  264 bits (674), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/186 (68%), Positives = 146/186 (78%), Gaps = 10/186 (5%)

Query: 3   GQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVEL 62
            QDY+FVR FV F ASVLIKAWKESD S GD EVILGGMA L DEI+WFK EA+KWG+ L
Sbjct: 53  AQDYLFVRAFVPFVASVLIKAWKESDCS-GDMEVILGGMASLEDEISWFKTEANKWGISL 111

Query: 63  SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE 122
           S+ VPQ+AN+ YC  LESLMSP+ +YTVAIT FWAIE VYQESFAHC+E  + TPPEL+E
Sbjct: 112 SDVVPQQANKNYCGLLESLMSPDAEYTVAITAFWAIETVYQESFAHCIEEGSKTPPELKE 171

Query: 123 VCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFW 182
            C RWGN+ FG+YC SL+ IANR L+KAS         D+ LKKAEV L+ VLEHEVEFW
Sbjct: 172 TCVRWGNEAFGKYCQSLQNIANRCLQKAS---------DEELKKAEVMLLSVLEHEVEFW 222

Query: 183 NMSRGT 188
           NMSRG 
Sbjct: 223 NMSRGN 228

Glycine max (taxid: 3847)

>sp|Q9ASY9|PM36_ARATH Seed maturation protein PM36 homolog OS=Arabidopsis thaliana GN=At3g16990 PE=1 SV=3

 Score =  224 bits (572), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 116/185 (62%), Positives = 131/185 (70%), Gaps = 10/185 (5%)

Query: 3   GQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVEL 62
           GQDY+FVR FV F ASVLI+A K+S +S  D EV+LGG+A L+DEI WFK+E SKW V+ 
Sbjct: 45  GQDYLFVRRFVPFVASVLIRACKDSGES-SDMEVVLGGIASLNDEIEWFKREGSKWDVDF 103

Query: 63  SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE 122
           S  VPQ+ANQ Y RFLE LMS EV Y V +T FWAIEAVYQESFAHCLE    TP EL  
Sbjct: 104 STVVPQRANQEYGRFLEDLMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDGNKTPVELTG 163

Query: 123 VCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFW 182
            C RWGNDGF QYC S+K IA R LE AS          +VL +AE  L+RVLE EV FW
Sbjct: 164 ACHRWGNDGFKQYCSSVKNIAERCLENAS---------GEVLGEAEDVLVRVLELEVAFW 214

Query: 183 NMSRG 187
            MSRG
Sbjct: 215 EMSRG 219

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
296083260	204	unnamed protein product [Vitis vinifera]	0.925	0.857	0.724	2e-70
359477222	225	PREDICTED: seed maturation protein PM36	0.925	0.777	0.724	4e-70
357478951	231	Seed maturation protein PM36 [Medicago t	0.931	0.761	0.682	1e-68
351724199	229	seed maturation protein PM36 [Glycine ma	0.931	0.768	0.688	2e-68
357478949	318	Seed maturation protein PM36 [Medicago t	0.931	0.553	0.682	3e-68
224099175	225	predicted protein [Populus trichocarpa]	0.925	0.777	0.637	1e-60
388510064	225	unknown [Medicago truncatula]	0.793	0.666	0.721	8e-60
255556348	230	Seed maturation protein PM36, putative [	0.920	0.756	0.630	8e-59
255625987	211	unknown [Glycine max]	0.793	0.710	0.708	1e-58
297834600	221	TENA/THI-4 family protein [Arabidopsis l	0.925	0.791	0.637	1e-57

>gi|296083260|emb|CBI22896.3| unnamed protein product [Vitis vinifera]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 150/185 (81%), Gaps = 10/185 (5%)

Query: 3   GQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVEL 62
           GQDYIFVR FV F+ASVL+KA KESD+S  D EVILGGMA L+DEIAWFKKEASKWG+EL
Sbjct: 30  GQDYIFVRAFVPFSASVLLKACKESDNS-SDMEVILGGMASLNDEIAWFKKEASKWGLEL 88

Query: 63  SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE 122
           S  VPQK NQ YCRFLESLMSP+V+YTVAIT FWAIEAVYQE FA CL+  + TPPEL+E
Sbjct: 89  STIVPQKVNQEYCRFLESLMSPQVEYTVAITAFWAIEAVYQEGFALCLQDGSKTPPELKE 148

Query: 123 VCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFW 182
            CQRWGNDGFGQYC SL+ IANR L         GKA  DV+ +AEV L++VLE EVEFW
Sbjct: 149 TCQRWGNDGFGQYCRSLQNIANRHL---------GKAPPDVVARAEVALLQVLELEVEFW 199

Query: 183 NMSRG 187
           NMS+G
Sbjct: 200 NMSQG 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477222|ref|XP_002277268.2| PREDICTED: seed maturation protein PM36 [Vitis vinifera]

 Score =  269 bits (687), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 134/185 (72%), Positives = 150/185 (81%), Gaps = 10/185 (5%)

Query: 3   GQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVEL 62
           GQDYIFVR FV F+ASVL+KA KESD+S  D EVILGGMA L+DEIAWFKKEASKWG+EL
Sbjct: 51  GQDYIFVRAFVPFSASVLLKACKESDNS-SDMEVILGGMASLNDEIAWFKKEASKWGLEL 109

Query: 63  SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE 122
           S  VPQK NQ YCRFLESLMSP+V+YTVAIT FWAIEAVYQE FA CL+  + TPPEL+E
Sbjct: 110 STIVPQKVNQEYCRFLESLMSPQVEYTVAITAFWAIEAVYQEGFALCLQDGSKTPPELKE 169

Query: 123 VCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFW 182
            CQRWGNDGFGQYC SL+ IANR L         GKA  DV+ +AEV L++VLE EVEFW
Sbjct: 170 TCQRWGNDGFGQYCRSLQNIANRHL---------GKAPPDVVARAEVALLQVLELEVEFW 220

Query: 183 NMSRG 187
           NMS+G
Sbjct: 221 NMSQG 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478951|ref|XP_003609761.1| Seed maturation protein PM36 [Medicago truncatula] gi|355510816|gb|AES91958.1| Seed maturation protein PM36 [Medicago truncatula]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 127/186 (68%), Positives = 146/186 (78%), Gaps = 10/186 (5%)

Query: 3   GQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVEL 62
            QDY+FVR FV F ASVLIKA KESDDS+ D EVILGGMA L DEI WFK+EA+KWG+  
Sbjct: 55  AQDYLFVRAFVPFVASVLIKACKESDDSD-DVEVILGGMASLKDEILWFKREANKWGISF 113

Query: 63  SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE 122
           S+ VPQKAN  YCR LESLMSP+VDYTV +T FWAIE VYQESFAHC+E  + TPPEL+E
Sbjct: 114 SDVVPQKANINYCRLLESLMSPDVDYTVTLTAFWAIEVVYQESFAHCIEEGSKTPPELKE 173

Query: 123 VCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFW 182
            C+RWGN+GFGQYC SL+KI N+ L+KAS         DD LKKAEV L+ ++EHEV FW
Sbjct: 174 TCERWGNEGFGQYCQSLQKILNQRLQKAS---------DDELKKAEVMLLSIIEHEVHFW 224

Query: 183 NMSRGT 188
           NMSRG 
Sbjct: 225 NMSRGN 230

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724199|ref|NP_001238329.1| seed maturation protein PM36 [Glycine max] gi|62287132|sp|Q9SWB6.1|PM36_SOYBN RecName: Full=Seed maturation protein PM36 gi|5802242|gb|AAD51624.1| seed maturation protein PM36 [Glycine max]

 Score =  264 bits (674), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 128/186 (68%), Positives = 146/186 (78%), Gaps = 10/186 (5%)

Query: 3   GQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVEL 62
            QDY+FVR FV F ASVLIKAWKESD S GD EVILGGMA L DEI+WFK EA+KWG+ L
Sbjct: 53  AQDYLFVRAFVPFVASVLIKAWKESDCS-GDMEVILGGMASLEDEISWFKTEANKWGISL 111

Query: 63  SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE 122
           S+ VPQ+AN+ YC  LESLMSP+ +YTVAIT FWAIE VYQESFAHC+E  + TPPEL+E
Sbjct: 112 SDVVPQQANKNYCGLLESLMSPDAEYTVAITAFWAIETVYQESFAHCIEEGSKTPPELKE 171

Query: 123 VCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFW 182
            C RWGN+ FG+YC SL+ IANR L+KAS         D+ LKKAEV L+ VLEHEVEFW
Sbjct: 172 TCVRWGNEAFGKYCQSLQNIANRCLQKAS---------DEELKKAEVMLLSVLEHEVEFW 222

Query: 183 NMSRGT 188
           NMSRG 
Sbjct: 223 NMSRGN 228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357478949|ref|XP_003609760.1| Seed maturation protein PM36 [Medicago truncatula] gi|355510815|gb|AES91957.1| Seed maturation protein PM36 [Medicago truncatula]

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 127/186 (68%), Positives = 146/186 (78%), Gaps = 10/186 (5%)

Query: 3   GQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVEL 62
            QDY+FVR FV F ASVLIKA KESDDS+ D EVILGGMA L DEI WFK+EA+KWG+  
Sbjct: 55  AQDYLFVRAFVPFVASVLIKACKESDDSD-DVEVILGGMASLKDEILWFKREANKWGISF 113

Query: 63  SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE 122
           S+ VPQKAN  YCR LESLMSP+VDYTV +T FWAIE VYQESFAHC+E  + TPPEL+E
Sbjct: 114 SDVVPQKANINYCRLLESLMSPDVDYTVTLTAFWAIEVVYQESFAHCIEEGSKTPPELKE 173

Query: 123 VCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFW 182
            C+RWGN+GFGQYC SL+KI N+ L+KAS         DD LKKAEV L+ ++EHEV FW
Sbjct: 174 TCERWGNEGFGQYCQSLQKILNQRLQKAS---------DDELKKAEVMLLSIIEHEVHFW 224

Query: 183 NMSRGT 188
           NMSRG 
Sbjct: 225 NMSRGN 230

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099175|ref|XP_002311391.1| predicted protein [Populus trichocarpa] gi|222851211|gb|EEE88758.1| predicted protein [Populus trichocarpa]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 118/185 (63%), Positives = 139/185 (75%), Gaps = 10/185 (5%)

Query: 3   GQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVEL 62
           GQDYIFVREFV FAASVL+KA K SDD+  D EVIL G+A L DEI+WFK+EA+KW V L
Sbjct: 48  GQDYIFVREFVPFAASVLLKASKNSDDN-SDMEVILSGLASLSDEISWFKQEAAKWDVPL 106

Query: 63  SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE 122
           S+ V  K+NQ YCRFLESLM P V+Y+V  T  WAIE VYQESF+HCLE  + TPPEL E
Sbjct: 107 SDVVVHKSNQNYCRFLESLMLPAVEYSVVFTALWAIETVYQESFSHCLEDGSKTPPELLE 166

Query: 123 VCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFW 182
            C+RWG++GFG++C SLKKI NR LEKA          D+ LKKAEV  + VLE E+EFW
Sbjct: 167 ACKRWGSEGFGEFCRSLKKIVNRCLEKAP---------DEELKKAEVTFLHVLELEIEFW 217

Query: 183 NMSRG 187
           +MS G
Sbjct: 218 DMSHG 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510064|gb|AFK43098.1| unknown [Medicago truncatula]

 Score =  235 bits (599), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 125/151 (82%), Gaps = 1/151 (0%)

Query: 3   GQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVEL 62
            QDY+FVR FV F ASVLIKA KESDDS+ D EVILGGMA L DEI WFK+EA+KWG+  
Sbjct: 55  AQDYLFVRAFVPFVASVLIKACKESDDSD-DVEVILGGMASLKDEILWFKREANKWGISF 113

Query: 63  SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE 122
           S+ VPQKAN  YCR LESLMSP+VDYTV +T FWAIE VYQESFAHC+E  + TPPEL+E
Sbjct: 114 SDVVPQKANINYCRLLESLMSPDVDYTVTLTAFWAIEVVYQESFAHCIEEGSKTPPELKE 173

Query: 123 VCQRWGNDGFGQYCHSLKKIANRLLEKASDD 153
            C+RWGN+GFGQYC SL+KI N+ L+KASDD
Sbjct: 174 TCERWGNEGFGQYCQSLQKILNQRLQKASDD 204

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556348|ref|XP_002519208.1| Seed maturation protein PM36, putative [Ricinus communis] gi|223541523|gb|EEF43072.1| Seed maturation protein PM36, putative [Ricinus communis]

 Score =  231 bits (590), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 116/184 (63%), Positives = 132/184 (71%), Gaps = 10/184 (5%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELS 63
           QDYIFVR+F  F ASVLIKA K+SDD E D EV+LGG+A L +EI WFK EASKW V LS
Sbjct: 55  QDYIFVRQFTPFVASVLIKASKKSDD-ENDMEVVLGGLASLDEEIDWFKSEASKWDVPLS 113

Query: 64  ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEV 123
                K NQ YCRFLESLM PEV+Y VAIT +WAIEAVYQ+SFAHCLE    T  EL+  
Sbjct: 114 NIAVHKTNQKYCRFLESLMLPEVEYAVAITAYWAIEAVYQQSFAHCLEDGNRTSLELENT 173

Query: 124 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWN 183
           C+RWGN+ F +YC SL+ I NR LEKA          +DV+ KAEV  + VLEHEVEFWN
Sbjct: 174 CRRWGNEAFAEYCRSLQTIVNRCLEKAP---------EDVIAKAEVTFLSVLEHEVEFWN 224

Query: 184 MSRG 187
           MS G
Sbjct: 225 MSHG 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255625987|gb|ACU13338.1| unknown [Glycine max]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/151 (70%), Positives = 124/151 (82%), Gaps = 1/151 (0%)

Query: 3   GQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVEL 62
            QDY+FVR FV F ASVLIKAWKESD S GD EVILGGMA L DEI+WFK EA+KWG+ L
Sbjct: 53  AQDYLFVRAFVPFVASVLIKAWKESDCS-GDMEVILGGMASLEDEISWFKTEANKWGISL 111

Query: 63  SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE 122
           S+ VPQ+AN+ YC  LESLMSP+ +YTVAIT FWAIE VYQESFAHC+E  + TPPEL+E
Sbjct: 112 SDVVPQQANKNYCGLLESLMSPDAEYTVAITAFWAIETVYQESFAHCIEEGSKTPPELKE 171

Query: 123 VCQRWGNDGFGQYCHSLKKIANRLLEKASDD 153
            C RWGN+ FG+YC SL+ IANR L+KASD+
Sbjct: 172 TCVRWGNEAFGKYCQSLQNIANRCLQKASDE 202

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834600|ref|XP_002885182.1| TENA/THI-4 family protein [Arabidopsis lyrata subsp. lyrata] gi|297331022|gb|EFH61441.1| TENA/THI-4 family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 118/185 (63%), Positives = 132/185 (71%), Gaps = 10/185 (5%)

Query: 3   GQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVEL 62
           GQDY+FVR FV F ASVLIKA K+S +S  D EV+LGG+A L+DEI WFKKE +KW V+ 
Sbjct: 45  GQDYLFVRGFVPFVASVLIKACKDSGES-SDMEVVLGGLASLNDEIEWFKKEGTKWDVDF 103

Query: 63  SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE 122
           S  VPQ ANQ Y RFLE+LMS EV Y V +T FWAIEAVYQESFAHCLE    TP EL  
Sbjct: 104 STVVPQNANQEYRRFLEALMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDGNKTPVELTG 163

Query: 123 VCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFW 182
            C RWGNDGF QYC S+K IA R LE AS          +VL +AE  L+RVLEHEV FW
Sbjct: 164 ACHRWGNDGFKQYCLSVKNIAERCLENAS---------GEVLVEAEDVLVRVLEHEVAFW 214

Query: 183 NMSRG 187
            MSRG
Sbjct: 215 EMSRG 219

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
TAIR|locus:2086052	221	AT3G16990 "AT3G16990" [Arabido	0.925	0.791	0.627	3.7e-55

TAIR|locus:2086052 AT3G16990 "AT3G16990" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 116/185 (62%), Positives = 134/185 (72%)

Query:     3 GQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVEL 62
             GQDY+FVR FV F ASVLI+A K+S +S  D EV+LGG+A L+DEI WFK+E SKW V+ 
Sbjct:    45 GQDYLFVRRFVPFVASVLIRACKDSGESS-DMEVVLGGIASLNDEIEWFKREGSKWDVDF 103

Query:    63 SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE 122
             S  VPQ+ANQ Y RFLE LMS EV Y V +T FWAIEAVYQESFAHCLE    TP EL  
Sbjct:   104 STVVPQRANQEYGRFLEDLMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDGNKTPVELTG 163

Query:   123 VCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFW 182
              C RWGNDGF QYC S+K IA R LE AS + ++G+A +DVL       +RVLE EV FW
Sbjct:   164 ACHRWGNDGFKQYCSSVKNIAERCLENASGE-VLGEA-EDVL-------VRVLELEVAFW 214

Query:   183 NMSRG 187
              MSRG
Sbjct:   215 EMSRG 219


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.409    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      189       189   0.00089  110 3  11 22  0.46    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  188 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.93u 0.10s 18.03t   Elapsed:  00:00:01
  Total cpu time:  17.93u 0.10s 18.03t   Elapsed:  00:00:01
  Start:  Sat May 11 07:03:47 2013   End:  Sat May 11 07:03:48 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ASY9	PM36_ARATH	No assigned EC number	0.6270	0.9259	0.7918	yes	no
Q9SWB6	PM36_SOYBN	No assigned EC number	0.6881	0.9312	0.7685	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.3	LOW CONFIDENCE prediction!
3rd Layer	1.3.3.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	189
pfam03070	210	pfam03070, TENA_THI-4, TENA/THI-4/PQQC family	2e-28
COG0819	218	COG0819, TenA, Putative transcription activator [T	5e-05

>gnl|CDD|217351 pfam03070, TENA_THI-4, TENA/THI-4/PQQC family

 Score =  104 bits (262), Expect = 2e-28
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 18/189 (9%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGV--- 60
           QDY++++ F    A   I A K  D  E   E I   +  +  EI    + A   G+   
Sbjct: 36  QDYLYLKNFPRVLA---ILASKAPDL-ELRREWIDRILDHIGGEIELHLRLAEALGLSRE 91

Query: 61  ELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLE-PDTNTPPE 119
           +LS+T P  A + Y  +L  L +    +  A+        VYQE      E  +  +  E
Sbjct: 92  DLSKTEPLPAAKAYVNYLLDL-ARRGSWLEALAALLPCLFVYQEIAERLKEKINGLSGSE 150

Query: 120 LQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEV 179
             E    +G++ F       +++ N LL   S         D  L++ +   +  LE E+
Sbjct: 151 YYEWIDDYGSEEFRSAVEEAERLLNHLLAYVS---------DSELEELQEIFLTSLEFEL 201

Query: 180 EFWNMSRGT 188
            FW+M+   
Sbjct: 202 SFWDMAYDA 210

Members of this family are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes. In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase. The THI-4 protein, which is involved in thiamine biosynthesis, is also a member of this family. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4. This family includes bacterial coenzyme PQQ synthesis protein C or PQQC proteins. Pyrroloquinoline quinone (PQQ) is the prosthetic group of several bacterial enzymes,including methanol dehydrogenase of methylotrophs and the glucose dehydrogenase of a number of bacteria. PQQC has been found to be required in the synthesis of PQQ but its function is unclear. The exact molecular function of members of this family is uncertain. Length = 210

>gnl|CDD|223889 COG0819, TenA, Putative transcription activator [Transcription]

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 40/190 (21%), Positives = 75/190 (39%), Gaps = 26/190 (13%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTE-VILGGMAGLHDEIAWFKKEASKWGV-- 60
           QDY+++  F    A   + A K  D    +    I+  +  +  E+   ++ A + G+  
Sbjct: 43  QDYLYLVNFARALA---LLASKAPDLELMEELAKIIQFL--VEGEMELHERLAEELGISL 97

Query: 61  -ELSETVPQKANQVYCRFLESL-MSPEVDYTVA--ITVFWAIEAVYQESFAHCLEPDTNT 116
            EL +T P  AN+ Y R+L     S      +A  +   W     Y E           +
Sbjct: 98  DELLKTEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWG----YAEIGKRLKAKPRAS 153

Query: 117 PPEL-QEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVL 175
           P    QE    + ++ F +    L+ + + L E +S++          L+K +   +   
Sbjct: 154 PNPPYQEWIDTYASEEFQEAVEELEALLDSLAENSSEE---------ELEKLKQIFLTAS 204

Query: 176 EHEVEFWNMS 185
             E+ FW+M+
Sbjct: 205 RFELAFWDMA 214

Length = 218

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
COG0819	218	TenA Putative transcription activator [Transcripti	100.0
PRK14713	530	multifunctional hydroxymethylpyrimidine phosphokin	100.0
PRK09517	755	multifunctional thiamine-phosphate pyrophosphoryla	100.0
PF03070	210	TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR0	100.0
PTZ00347	504	phosphomethylpyrimidine kinase; Provisional	100.0
KOG2598	523	consensus Phosphomethylpyrimidine kinase [Coenzyme	99.89
COG5424	242	Pyrroloquinoline quinone (Coenzyme PQQ) biosynthes	96.93
PRK05157	246	pyrroloquinoline quinone biosynthesis protein PqqC	96.76
TIGR02111	239	PQQ_syn_pqqC coenzyme PQQ biosynthesis protein C.	96.3
CHL00168	238	pbsA heme oxygenase; Provisional	88.2
PF12981	231	DUF3865: Domain of Unknown Function with PDB struc	82.22

>COG0819 TenA Putative transcription activator [Transcription]

Probab=100.00  E-value=1.3e-45  Score=294.84  Aligned_cols=172  Identities=22%  Similarity=0.274  Sum_probs=157.7

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhHHH-HHHHHHHHHHHhCCCCC---CCCCchhHHHHHH
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHD-EIAWFKKEASKWGVELS---ETVPQKANQVYCR   76 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~~~-E~~~h~~~~~~~gi~~~---~~~~~p~~~aY~~   76 (189)
                      ||+|||+||.+|+|+++++++|+|   +  .+.+..+++.+..+.+ |+.+|+.+++++||+.+   +.+|+|+|++||+
T Consensus        40 YL~QDy~YL~~~~ra~~~~~~ka~---~--~~~~~~~~~~~~~~~~~E~~~h~~~~~~lgis~~~~~~~~~~~~~~aYt~  114 (218)
T COG0819          40 YLVQDYLYLVNFARALALLASKAP---D--LELMEELAKIIQFLVEGEMELHERLAEELGISLDELLKTEPSPANKAYTR  114 (218)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhcCCCchHHHHHH
Confidence            899999999999999999999999   4  4668889999988876 99999999999999973   3689999999999


Q ss_pred             HHHHhcC--CchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhh
Q 029678           77 FLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDL  154 (189)
Q Consensus        77 ~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~  154 (189)
                      ||++++.  ++..+++||+||+|+|.+||+.+....  ..+++++|++||++|+|++|++.|++++++||+++...++  
T Consensus       115 ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~--~~~~~~~Y~~Wi~~Y~s~ef~~~v~~~~~~ld~~~~~~~~--  190 (218)
T COG0819         115 YLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKP--RASPNPPYQEWIDTYASEEFQEAVEELEALLDSLAENSSE--  190 (218)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCCCcHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCH--
Confidence            9999987  799999999999999999999887433  2247899999999999999999999999999999988887  


Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHHhHhhhcC
Q 029678          155 IMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT  188 (189)
Q Consensus       155 ~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~ay~~  188 (189)
                             +++++|++||+++|++|.+||||||+.
T Consensus       191 -------~~~~~l~~iF~~ss~~E~~Fwd~a~~~  217 (218)
T COG0819         191 -------EELEKLKQIFLTASRFELAFWDMAYRL  217 (218)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                   899999999999999999999999975

>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional

Probab=100.00  E-value=8.8e-40  Score=292.76  Aligned_cols=170  Identities=14%  Similarity=0.108  Sum_probs=153.3

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhHH-HHHHHHHHHHHHhCCCCCCCCCchhHHHHHHHHH
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLH-DEIAWFKKEASKWGVELSETVPQKANQVYCRFLE   79 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~~-~E~~~h~~~~~~~gi~~~~~~~~p~~~aY~~~l~   79 (189)
                      ||+||++||.+|+|+++++++|+++     .+.+..+.+.+..+. .|+++|+.+++++|+   +.+++|+|++|++||+
T Consensus       357 Yl~QD~~yL~~~~r~~a~~~aka~~-----~e~~~~~~~~~~~~~~~E~~~h~~~~~~~~~---~~~~~p~~~aY~~~l~  428 (530)
T PRK14713        357 YLAQDALYLNGYSRALARLAALAPD-----PAEQVFWAQSAQACLEVESELHRSWLGDRDA---DTAPSPVTLAYTDFLL  428 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc---cCCCChHHHHHHHHHH
Confidence            8999999999999999999999994     456888888887765 599999999999998   3689999999999999


Q ss_pred             HhcC--CchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhhhhc
Q 029678           80 SLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMG  157 (189)
Q Consensus        80 ~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~  157 (189)
                      +++.  ++.++++||+||+|+|.++|+.+....  ...++++|++||++|+|++|.++|+++++++|+++..+++     
T Consensus       429 ~~a~~~~~~~~l~AllPC~~~Y~~ig~~l~~~~--~~~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~-----  501 (530)
T PRK14713        429 ARAAGGSYAVGAAAVLPCFWLYAEVGAELHARA--GNPDDHPYAEWLQTYADPEFAAATRRAIAFVDRAFRAASP-----  501 (530)
T ss_pred             HHHhcCCHHHHHHHHHhHHHHHHHHHHHHHhhc--cCCCCChHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH-----
Confidence            9866  888999999999999999999886321  1125789999999999999999999999999999988887     


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhHhhhcCC
Q 029678          158 KAGDDVLKKAEVELIRVLEHEVEFWNMSRGTA  189 (189)
Q Consensus       158 ~~~~~~~~~~~~~F~~~~~lE~~FWd~ay~~~  189 (189)
                          +++++|+++|+++|+||++||||||+++
T Consensus       502 ----~~~~~~~~~F~~a~~~E~~Fwd~A~~~~  529 (530)
T PRK14713        502 ----AERAAMARAFLTACRYELEFFDQARRRA  529 (530)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                8999999999999999999999999875

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional

Probab=100.00  E-value=7.1e-39  Score=296.57  Aligned_cols=167  Identities=15%  Similarity=0.087  Sum_probs=151.2

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhHH-HHHHHHHHHHHHhCCCCCCCCCchhHHHHHHHHH
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLH-DEIAWFKKEASKWGVELSETVPQKANQVYCRFLE   79 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~~-~E~~~h~~~~~~~gi~~~~~~~~p~~~aY~~~l~   79 (189)
                      ||+|||+||++|+|+++++++|+|+     .+.+..+...+..+. +|+++|+.+++++|+   +.+++|+|++|++||+
T Consensus       583 YL~QD~~YL~~yar~~a~~~aka~~-----~~~~~~~~~~~~~~~~~E~~~h~~~~~~~~~---~~~~~p~~~aYt~~l~  654 (755)
T PRK09517        583 YIDQDAQYLRQYSRALARLSSIAPD-----SHAQVEWAQSAAECIVVEAELHRSYLSGKEA---PSAPSPVTMAYTDFLI  654 (755)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---CCCCChHHHHHHHHHH
Confidence            8999999999999999999999994     456888888887665 599999999999987   3688999999999999


Q ss_pred             HhcC--CchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhhhhc
Q 029678           80 SLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMG  157 (189)
Q Consensus        80 ~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~  157 (189)
                      +++.  ++.++++||+||+|+|.++|+.+...   . .++++|++||++|+|++|.++|+++++++|+++...++     
T Consensus       655 ~~a~~g~~~~~laAllPC~w~Y~~ig~~l~~~---~-~~~~~Y~~WI~~Y~~~~f~~~v~~~~~~ld~~~~~~s~-----  725 (755)
T PRK09517        655 ARTYTEDYVVGVAAVLPCYWLYAEIGLMLAEQ---N-HDEHPYKDWLNTYSGEEFIAGTRAAIARVEKALENAGP-----  725 (755)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhc---c-CCCchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCH-----
Confidence            9866  78999999999999999999988631   2 24678999999999999999999999999999988887     


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHhHhhhcC
Q 029678          158 KAGDDVLKKAEVELIRVLEHEVEFWNMSRGT  188 (189)
Q Consensus       158 ~~~~~~~~~~~~~F~~~~~lE~~FWd~ay~~  188 (189)
                          +++++|+++|+++|+||++||||||++
T Consensus       726 ----~~~~~l~~~F~~a~~lE~~Fwd~A~~~  752 (755)
T PRK09517        726 ----EQRVDAARAFLSASVHEREFFDQATRH  752 (755)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                899999999999999999999999975

>PF03070 TENA_THI-4: TENA/THI-4/PQQC family; InterPro: IPR004305 Proteins containing this domain are found in all the three major phyla of life: archaebacteria, eubacteria, and eukaryotes

Probab=100.00  E-value=1.5e-38  Score=253.13  Aligned_cols=171  Identities=22%  Similarity=0.287  Sum_probs=150.7

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHh-hHHHHHHHHHHHHHHhCCCCCC---CCCchhHHHHHH
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMA-GLHDEIAWFKKEASKWGVELSE---TVPQKANQVYCR   76 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~-~~~~E~~~h~~~~~~~gi~~~~---~~~~p~~~aY~~   76 (189)
                      ||+||++||.+|+|+++.+++|+|++     +.+..+...+. .+.+|+++|..+++++||+.++   .+|+|+|++|++
T Consensus        33 Yl~QD~~yl~~~~r~~a~~~~~~~~~-----~~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~~~~~~~~p~~~~y~~  107 (210)
T PF03070_consen   33 YLIQDYHYLKHFARALALLASKAPDP-----EEQRELLSRLIQEIEEELELHEDFAEELGISREDLENIEPSPATRAYTD  107 (210)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHSTC-HHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhhhhHHHHHHH
Confidence            79999999999999999999999954     34544555554 4556999999999999999876   789999999999


Q ss_pred             HHHHhcC--CchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhh
Q 029678           77 FLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDL  154 (189)
Q Consensus        77 ~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~  154 (189)
                      ||.+++.  ++.++++||+||.|+|..+|+.+.....  ..++++|++||+.|++++|.+.|+++.+++|+++...++  
T Consensus       108 ~l~~~a~~~~~~~~l~al~pc~~~Y~~~~~~~~~~~~--~~~~~~y~~wi~~y~~~~f~~~~~~~~~~~~~~~~~~~~--  183 (210)
T PF03070_consen  108 FLLSLAQTGSLAEGLAALLPCEWIYAEIGKRLAEKLR--APEDNPYQEWIDMYASEEFEAFVEWLEELLDELAAEASD--  183 (210)
T ss_dssp             HHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHCS--TTSSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHTHHH--
T ss_pred             HHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhcccc--CCCCccHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCH--
Confidence            9999866  7999999999999999999998874432  236799999999999999999999999999999988876  


Q ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHHhHhhhc
Q 029678          155 IMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG  187 (189)
Q Consensus       155 ~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~ay~  187 (189)
                             +++++++++|+++|++|++|||+||+
T Consensus       184 -------~~~~~~~~~f~~~~~~E~~Fwd~a~~  209 (210)
T PF03070_consen  184 -------EERERLEEIFRRSCELEYDFWDAAYN  209 (210)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                   78999999999999999999999985

In Bacillus subtilis, TENA is one of a number of proteins that enhance the expression of extracellular enzymes, such as alkaline protease, neutral protease and levansucrase []. The THI-4 protein, which is involved in thiamine biosynthesis, also contains this domain. The C-terminal part of these proteins consistently show significant sequence similarity to TENA proteins. This similarity was first noted with the Neurospora crassa THI-4 []. The exact molecular function of this domain is uncertain.; PDB: 2RD3_D 3RM5_B 1UDD_D 1Z72_B 3HML_A 3HLX_A 3HNH_A 3DDE_B 3OQL_A 2A6B_A ....

>PTZ00347 phosphomethylpyrimidine kinase; Provisional

Probab=100.00  E-value=3.3e-36  Score=268.36  Aligned_cols=165  Identities=10%  Similarity=0.135  Sum_probs=142.1

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhHHH-HHHHHHHHHHHhCCCCCCCCCchhHHHHHHHHH
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHD-EIAWFKKEASKWGVELSETVPQKANQVYCRFLE   79 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~~~-E~~~h~~~~~~~gi~~~~~~~~p~~~aY~~~l~   79 (189)
                      ||+||++||++|+|+++++++|+++     .+++..+++.+..+.+ |+.+|+.+++.    .+..+++|+|++|++||+
T Consensus        50 Yl~QD~~Yl~~~~r~~a~~~~ka~~-----~~~~~~~~~~~~~~~~~e~~~h~~~~~~----~~~~~~~p~~~aY~~~l~  120 (504)
T PTZ00347         50 YIAQDTLYLNGYIRILSYCITKSDV-----TATGGGLLELLKGVLEELKNCHHHYIDN----PDAAGPEAACRKYVDFLL  120 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhccCCCHHHHHHHHHHH
Confidence            8999999999999999999999994     3557888888877765 77899999742    234678999999999999


Q ss_pred             HhcC--Cc--hhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhhh
Q 029678           80 SLMS--PE--VDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLI  155 (189)
Q Consensus        80 ~~a~--~~--~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~  155 (189)
                      +++.  ++  ..+++||+||+|+|.++|+.+....  ..+++++|++||++|+|++|.++|+++++++|+++..      
T Consensus       121 ~~a~~g~~~~~~~l~Al~pC~~~Y~~ig~~l~~~~--~~~~~~~y~~Wi~~y~~~~f~~~~~~~~~~ld~~~~~------  192 (504)
T PTZ00347        121 ASGNADTLGPSVVIAAVIPCARLYAWVGQELTNEV--ELTESHPFRRWLLSYSDEPINTSVEQLESLLDKYIRP------  192 (504)
T ss_pred             HHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHHHhch------
Confidence            9877  56  7899999999999999999886321  1225789999999999999999999999999998642      


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHhHhhhcC
Q 029678          156 MGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT  188 (189)
Q Consensus       156 ~~~~~~~~~~~~~~~F~~~~~lE~~FWd~ay~~  188 (189)
                            +++++++++|+++|+||++||||||++
T Consensus       193 ------~~~~~~~~~F~~~~~~E~~Fw~~Ay~~  219 (504)
T PTZ00347        193 ------GEFSEVAQAYRRAMELEYDFFDSFGYC  219 (504)
T ss_pred             ------hhHHHHHHHHHHHHHHHHHHhHhHHhh
Confidence                  567889999999999999999999974

>KOG2598 consensus Phosphomethylpyrimidine kinase [Coenzyme transport and metabolism; Transcription]

Probab=99.89  E-value=1.8e-22  Score=171.99  Aligned_cols=167  Identities=14%  Similarity=0.178  Sum_probs=144.9

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhHHHHHHHHHHHHHHhCCCCCC---CCCchhHHHHHHH
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELSE---TVPQKANQVYCRF   77 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~~~E~~~h~~~~~~~gi~~~~---~~~~p~~~aY~~~   77 (189)
                      |+.|||+||.+|+|+++....|.++.     +++..-+...+.+.+|+..|.++++.||++..+   -+++|++++|.+|
T Consensus       350 ~l~qdy~ylIn~ara~~v~g~ks~~i-----~~ie~~~~iv~~v~~e~~~h~~l~e~~Gv~~~d~~~~~~~pa~~Aysry  424 (523)
T KOG2598|consen  350 YLEQDYLYLINYARAHGVAGSKSPTI-----EDIEKEAVIVQHVREELVQHVRLREEYGVSDPDYLSCKKGPALRAYSRY  424 (523)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccCCcH-----HHHHHHhHHHHHHHhhccchHHHHHHhCCCchhhhhcCccHHHHHHHHH
Confidence            78999999999999999999999955     346666666667778999999999999999875   2348999999999


Q ss_pred             HHHhcC--CchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhhh
Q 029678           78 LESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLI  155 (189)
Q Consensus        78 l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~  155 (189)
                      +..+++  ++..+..|+.|    |....+.+....  ..++.++|++|+++|++.++.+.++...+.++...+..++   
T Consensus       425 ~~d~~~~g~~~~l~~a~~p----y~~~l~~lk~~~--~as~g~vy~~w~e~~~~~~~~~ai~~g~~~l~~i~~~~~p---  495 (523)
T KOG2598|consen  425 INDTGRRGNWQELVIALNP----YVFALDKLKDEI--TASEGSVYVEWVETYSSSWYTSAIDEGERLLEHIVETLSP---  495 (523)
T ss_pred             hhhhhcccChhhhhhhhch----hhHHHHHHHhhc--ccCCCCceeehhhhccchhHHHHHHHHHHHHHHHHHhcCH---
Confidence            999987  78899999999    555666665332  2246789999999999999999999999999999999998   


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHhHhhhc
Q 029678          156 MGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG  187 (189)
Q Consensus       156 ~~~~~~~~~~~~~~~F~~~~~lE~~FWd~ay~  187 (189)
                            ++.+.+..+|.++|++|..||+.++.
T Consensus       496 ------e~~~~l~~i~~~~~~~Et~fw~t~~~  521 (523)
T KOG2598|consen  496 ------EKLQTLVTIFARVTEFETLFWTTALE  521 (523)
T ss_pred             ------HHHHHHHHHHHHHHHHHHhhcccccc
Confidence                  99999999999999999999999875

>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]

Probab=96.93  E-value=0.027  Score=45.66  Aligned_cols=164  Identities=13%  Similarity=0.151  Sum_probs=98.8

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHh----hHH--HHHHHHHHHHHHhCCCCCC---CCCchhH
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMA----GLH--DEIAWFKKEASKWGVELSE---TVPQKAN   71 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~----~~~--~E~~~h~~~~~~~gi~~~~---~~~~p~~   71 (189)
                      |++.-++|+++|.+.++.+++++++.     +......+.+.    +..  +=+++-.++...+|++.++   ..|.|.+
T Consensus        46 yvi~~~~~~k~~p~~lSail~rcdd~-----~~r~~~leni~de~~g~~e~~hidlwlr~aeAlGvs~eei~s~eplp~~  120 (242)
T COG5424          46 YVINRYYYQKNFPLYLSAILARCDDD-----DVRREWLENIMDEDNGYNEPNHIDLWLRLAEALGVSREEILSHEPLPST  120 (242)
T ss_pred             HHHhhhHHHHhhhHHHHHHHhcCCcH-----hHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHcCCCHHHHhhcCCCHHH
Confidence            67778899999999999999999954     23333333332    111  2357777888999999875   4699999


Q ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhCChHH--------HHHHHHHHHHH
Q 029678           72 QVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGF--------GQYCHSLKKIA  143 (189)
Q Consensus        72 ~aY~~~l~~~a~~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f--------~~~v~~l~~~l  143 (189)
                      +.=+..-...+. -..+++++...+..+....+...... +   +-+.|-.|++ ...-.|        ..=+.+..+++
T Consensus       121 ~~av~~~~~~a~-~~s~~~~~aslyt~El~apri~~~ki-~---gl~~~~~~~~-~a~~~yf~~h~eaD~~Ha~Ealkiv  194 (242)
T COG5424         121 RFAVDTWVRFAT-EKSWLEGAASLYTYELVAPRISVEKI-S---GLPYFNGFSD-AAAYAYFREHLEADVRHAEEALKIV  194 (242)
T ss_pred             HHHHHHHHHHhc-chhHHHHHHHHHHHHhhccHHHHHHc-c---CchhhcCcch-HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            999998888775 33444555555555665655332111 1   1122333443 111111        12223334455


Q ss_pred             HHHHhhcchhhhhcccchHHHHHHHHHHHHHHHHHHHHhHhhh
Q 029678          144 NRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSR  186 (189)
Q Consensus       144 d~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~ay  186 (189)
                      .+++.+           .+...++.++-.++...=+.|-|..+
T Consensus       195 ~~~~~t-----------~E~~~~~~~~~~~~~D~lw~fLda~~  226 (242)
T COG5424         195 LELAGT-----------RELQDQVLDALQKSLDVLWLFLDARM  226 (242)
T ss_pred             HHHHhc-----------hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544432           14456788888888888888877654

>PRK05157 pyrroloquinoline quinone biosynthesis protein PqqC; Provisional

Probab=96.76  E-value=0.12  Score=42.40  Aligned_cols=154  Identities=7%  Similarity=-0.027  Sum_probs=95.0

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhHHH---------HHHHHHHHHHHhCCCCCC---C-CC
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHD---------EIAWFKKEASKWGVELSE---T-VP   67 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~~~---------E~~~h~~~~~~~gi~~~~---~-~~   67 (189)
                      |+.|=|+|-..+-+-.+-+++++|++     +....+.+   ++.+         -++...++.+.+|++.+.   . ++
T Consensus        48 wa~nrYyyq~~~P~kdaaI~S~c~D~-----e~Rr~w~~---ri~d~dG~~~~~ghie~Wlrf~ealGl~re~v~s~~~~  119 (246)
T PRK05157         48 WVANRFYYQINIPLKDAAILSNCPDR-----ETRREWRQ---RILDHDGDGGGEGGIERWLRLGEAVGLDRDYVLSLRGV  119 (246)
T ss_pred             HHHHhchhhccchHHHHHHHHcCCCH-----HHHHHHHH---HHHHhcCCCCCCCcHHHHHHHHHHcCCCHHHHhccccC
Confidence            34555777778888889999999944     33444443   3333         257899999999999865   2 46


Q ss_pred             chhHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhC--ChH-HHHH-------
Q 029678           68 QKANQVYCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWG--NDG-FGQY-------  135 (189)
Q Consensus        68 ~p~~~aY~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~--s~~-f~~~-------  135 (189)
                      .|.|+..++-....+.  ++.+++++++.-+..=.++.+.+              ..|-++|.  +++ +.=|       
T Consensus       120 lP~tr~aVday~~~~r~~~~~eavas~ltE~~~P~I~~~ri--------------~gl~~~Y~~~~~e~l~yF~~h~~~a  185 (246)
T PRK05157        120 LPGVRFAVDAYVNFARRAPWLEAVASSLTELFAPQIHQERL--------------AGWPEHYPWIDPEGLAYFRSRLTQA  185 (246)
T ss_pred             ChHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhhHHHHHHH--------------HHHHHHCCCCCHHHHHHHHHHhhcc
Confidence            7999888887777654  66777776655332222222222              23333333  222 2111       


Q ss_pred             ---HHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHHHHHHHhHhhhc
Q 029678          136 ---CHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRG  187 (189)
Q Consensus       136 ---v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~ay~  187 (189)
                         |+...+++-+.+  .++         ++++++.++-...|..=+.|+|+-|.
T Consensus       186 ~~Dvehal~~~l~~~--~t~---------e~q~~al~al~~k~d~Lw~~LDai~~  229 (246)
T PRK05157        186 PRDVEHGLAYVLDHA--TTR---------EQQERALEALQFKLDVLWSMLDALYM  229 (246)
T ss_pred             chhHHHHHHHHHHHc--CCH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               222222222222  133         77889999999999999999998653

>TIGR02111 PQQ_syn_pqqC coenzyme PQQ biosynthesis protein C

Probab=96.30  E-value=0.16  Score=41.52  Aligned_cols=152  Identities=9%  Similarity=0.033  Sum_probs=89.3

Q ss_pred             CchhhHHHHHHHHHHHHHHHhhhcCCCCCChhhHHHHHHHHhhHHH---------HHHHHHHHHHHhCCCCCC----CCC
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHD---------EIAWFKKEASKWGVELSE----TVP   67 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~l~~~~~~~~~---------E~~~h~~~~~~~gi~~~~----~~~   67 (189)
                      |..|-|+|-..+-+-.+-+.+++|++     +..+.+++   ++.+         -+++..++++..|++.+.    ...
T Consensus        41 wa~nrYyyq~~iP~kdAAi~s~c~D~-----e~Rr~wl~---ri~DhdG~~~~~ggie~WlrfaealGl~re~v~s~~~~  112 (239)
T TIGR02111        41 WVLNRYYYQANIPLKDAAILARCPDP-----QLRRIWRQ---RILDHDGDHEEDGGIERWLRLAEAVGLDREYVLSTRGV  112 (239)
T ss_pred             HHHHhhhhhhcccHHHHHHHHcCCCH-----HHHHHHHH---HHHHhcCCCCCCCcHHHHHHHHHHhCCCHHHHhcccCC
Confidence            34566788777888889999999943     33444443   3333         257899999999999864    234


Q ss_pred             chhHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHhcccCCCCCCChhHHHHHHhhC--ChH-HHHHHHHH---
Q 029678           68 QKANQVYCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWG--NDG-FGQYCHSL---  139 (189)
Q Consensus        68 ~p~~~aY~~~l~~~a~--~~~~~~~al~pc~~~y~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~--s~~-f~~~v~~l---  139 (189)
                      .|.|+..++=....+.  ++.+.+++++.=..+=.++.+++              ..|.++|.  +++ +.=|-.++   
T Consensus       113 lP~trfaVday~~f~r~~~~~eavasslTE~f~P~I~~~ri--------------~gl~~~Y~~~~~e~l~yF~~r~~qa  178 (239)
T TIGR02111       113 LPGTRFAVDAYVHFVREKSLLEAIASSLTELFAPQIHSERV--------------AGMLQHYDFIDDAALAYFRKRLTQA  178 (239)
T ss_pred             CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhHHHHHHHH--------------HhHHHHCCCCCHHHHHHHHHHHhhh
Confidence            7888755554444333  67777777554222222222222              23333332  233 11111111   


Q ss_pred             -HHH-------HHHHHhhcchhhhhcccchHHHHHHHHHHHHHHHHHHHHhHhhh
Q 029678          140 -KKI-------ANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSR  186 (189)
Q Consensus       140 -~~~-------ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~lE~~FWd~ay  186 (189)
                       +++       ++.+   .++         ++++++.++-...|..=+.|.|.-|
T Consensus       179 ~rd~e~~l~~~l~~~---~t~---------e~Q~~~l~al~fk~dvLw~~LDal~  221 (239)
T TIGR02111       179 PRDVEFGLDYVLDHA---TTR---------EKQEAALEALTFKCDVLWAQLDALY  221 (239)
T ss_pred             HHHHHHHHHHHHHHc---CCH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             111       2221   133         6788899999999999999999765

This model describes the coenzyme PQQ (pyrrolo-quinoline-quinone) biosynthesis protein PqqC.In contrast to the broader model pfam05312, this model does not include related proteins likely to be functionally distinct from PqqC, such as homologs found in the Chlamydias.

>CHL00168 pbsA heme oxygenase; Provisional

Probab=88.20  E-value=9.8  Score=31.12  Aligned_cols=82  Identities=7%  Similarity=0.088  Sum_probs=46.4

Q ss_pred             CCCCCC-CCCchhHHHHHHHHHHhcCCchhHHHHHHH-HHHHH-------HHHHHHHhcccCCCCCCChhHHHHHHhhCC
Q 029678           59 GVELSE-TVPQKANQVYCRFLESLMSPEVDYTVAITV-FWAIE-------AVYQESFAHCLEPDTNTPPELQEVCQRWGN  129 (189)
Q Consensus        59 gi~~~~-~~~~p~~~aY~~~l~~~a~~~~~~~~al~p-c~~~y-------~~~~~~~~~~~~~~~~~~~~y~~Wi~~y~s  129 (189)
                      |-+..+ ++|+|++..|++++.+++.+..   .++++ |+..|       +.|.+.+.+..  +.+++. =-.+-+++.-
T Consensus        89 G~~w~~~~~p~pa~~~Yv~rI~~~~~~~P---~~LvAH~YvrYLGdlsGGQiI~k~l~r~~--gl~~~~-G~~Fy~F~~i  162 (238)
T CHL00168         89 GDDWKSIIEPSPATKIYVDRIHKISAKKP---ELLIAHAYTRYLGDLSGGQILKKIAQRAM--NLSDSG-GLAFYDFDNI  162 (238)
T ss_pred             CCCccccCCCChHHHHHHHHHHHHhhcCh---HHHHHHHHHHHHHhccccHHHHHHHHHHh--CCCCCc-CccccCCCCc
Confidence            544433 6889999999999999876332   34555 55566       34433332221  111110 0123333332


Q ss_pred             hHHHHHHHHHHHHHHHH
Q 029678          130 DGFGQYCHSLKKIANRL  146 (189)
Q Consensus       130 ~~f~~~v~~l~~~ld~~  146 (189)
                      ++-..+.+..++.+|++
T Consensus       163 ~~~~~fk~~yr~~Ld~l  179 (238)
T CHL00168        163 EDDQEFKQIYKAALDNL  179 (238)
T ss_pred             CcHHHHHHHHHHHHhcC
Confidence            44578888888888865

>PF12981 DUF3865: Domain of Unknown Function with PDB structure (DUF3865); InterPro: IPR024477 This entry represents a family of proteins of unknown function

Probab=82.22  E-value=25  Score=28.43  Aligned_cols=134  Identities=10%  Similarity=0.184  Sum_probs=72.4

Q ss_pred             HHHHHhhHHHHHH----------HHHHHHHH-hCCCCCCCCCchhHHHHHHHHHHhcC-CchhHHHHHHHHHHHHH----
Q 029678           37 ILGGMAGLHDEIA----------WFKKEASK-WGVELSETVPQKANQVYCRFLESLMS-PEVDYTVAITVFWAIEA----  100 (189)
Q Consensus        37 l~~~~~~~~~E~~----------~h~~~~~~-~gi~~~~~~~~p~~~aY~~~l~~~a~-~~~~~~~al~pc~~~y~----  100 (189)
                      ..+...++.+|+.          +++.-+.. +|.+.....|+++|.....-+..+.. +.   -.+|=.|+.++.    
T Consensus        72 ~~El~~Ni~EE~G~~~gk~sHy~~~~~~l~~~~~~~v~~~~Ps~aT~~fl~sv~~L~t~~~---s~vlGa~YAtE~~AIp  148 (231)
T PF12981_consen   72 AQELQRNINEEMGEGCGKISHYVVFRKALHTYFGFDVNNRMPSVATTHFLDSVLALFTWDS---SEVLGACYATEAAAIP  148 (231)
T ss_dssp             HHHHHHHHHHHTTTTTTT--HHHHHHHHHHHHHS---TT----HHHHHHHHHHHHHCTS-H---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHhcCCCCCCcchHHHHHHHHHHHhCCcccccCCcHHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHH
Confidence            3445567777886          56665554 89998889999999999999988865 33   223334444432    


Q ss_pred             --HHHHHHhcccCCCCC--CChhHHHHHHhhCChHHHHHHHHHHHHHHHHHhhcchhhhhcccchHHHHHHHHHHHHHHH
Q 029678          101 --VYQESFAHCLEPDTN--TPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLE  176 (189)
Q Consensus       101 --~~~~~~~~~~~~~~~--~~~~y~~Wi~~y~s~~f~~~v~~l~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~  176 (189)
                        .....+........+  -+...-+|.+.+-+.-=.+-.+.+++.++......           +++...++=|+.++.
T Consensus       149 El~ll~ei~~~la~rk~~~~~~s~l~F~d~HlDg~E~~H~d~L~~~l~~~i~~e-----------~q~~~f~~Gf~~mI~  217 (231)
T PF12981_consen  149 ELQLLYEIVNELAQRKGLHNSWSQLDFYDWHLDGTEQEHKDGLRQFLASYIDTE-----------EQMPLFKDGFLAMID  217 (231)
T ss_dssp             HHHHHHHHHTTT---HHHHH------HHHHHCS----HHHHHHHHHHHTT--GG-----------G-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCcchhhhHHHHHhcchHHHHHHHHHHHHHHHHcCcc-----------hhHHHHHHHHHHHHH
Confidence              222233221111000  01122266777776666778888888888654321           457788999999999


Q ss_pred             HHHHHhHh
Q 029678          177 HEVEFWNM  184 (189)
Q Consensus       177 lE~~FWd~  184 (189)
                      .=..||+.
T Consensus       218 ~m~~wW~~  225 (231)
T PF12981_consen  218 IMEDWWKE  225 (231)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88889975

The Nostoc punctiforme protein (D0VWS1 from SWISSPROT) has been structurally characterised and adopts a heme oxygenase-like fold similar to that of the Chlamydia trachomatis death domain-binding CADD protein. The proposed active sites of the Nostoc and Chlamydia sequences are identical, suggesting similar functions.; PDB: 3B5P_A 3B5O_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	189
2f2g_A	221	X-Ray Structure Of Gene Product From Arabidopsis Th		1e-57
1rtw_A	220	X-Ray Structure Of Pf1337, A Tena Homologue From Py		1e-04

>pdb|2F2G|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana At3g16990 Length = 221

Iteration: 1
 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/185 (61%), Positives = 128/185 (69%), Gaps = 10/185 (5%)
Query: 3   GQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVEL 62
           GQDY+FVR FV F ASVLI+A K+S +S  D EV+LGG+A L+DEI WFK+E SKW V+ 
Sbjct: 45  GQDYLFVRRFVPFVASVLIRACKDSGES-SDXEVVLGGIASLNDEIEWFKREGSKWDVDF 103
Query: 63  SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE 122
           S  VPQ+ANQ Y RFLE L S EV Y V  T FWAIEAVYQESFAHCLE    TP EL  
Sbjct: 104 STVVPQRANQEYGRFLEDLXSSEVKYPVIXTAFWAIEAVYQESFAHCLEDGNKTPVELTG 163
Query: 123 VCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFW 182
            C RWGNDGF QYC S+K IA R LE AS          +VL +AE  L+RVLE EV FW
Sbjct: 164 ACHRWGNDGFKQYCSSVKNIAERCLENAS---------GEVLGEAEDVLVRVLELEVAFW 214
Query: 183 NMSRG 187
             SRG
Sbjct: 215 EXSRG 219

>pdb|1RTW|A Chain A, X-Ray Structure Of Pf1337, A Tena Homologue From Pyrococcus Furiosus. Northeast Structural Genomics Research Consortium (Nesg) Target Pfr34 Length = 220

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 18/184 (9%)
Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELS 63
            DY FV+  + F A +  KA    DD           +  +  E+  F+K+A + G+ L+
Sbjct: 42  NDYYFVKNALRFXALLXAKA---PDDL---LPFFAESIYYISKELEXFEKKAQELGISLN 95
Query: 64  ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEV 123
             +  +A + Y  +L S+ S    +    T  +  E  Y E++    E      P  QE 
Sbjct: 96  GEIDWRA-KSYVNYLLSVASL-GSFLEGFTALYCEEKAYYEAWKWVRENLKERSP-YQEF 152
Query: 124 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWN 183
              W +  FG+Y   ++KI N L EK  +     +   +V K+       V + E+ FW+
Sbjct: 153 INHWSSQEFGEYVKRIEKILNSLAEKHGE--FEKERAREVFKE-------VSKFELIFWD 203
Query: 184 MSRG 187
           ++ G
Sbjct: 204 IAYG 207

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	189
1wwm_A	190	Hypothetical protein TT2028; TENA/THI-4 family, pu	5e-41
2f2g_A	221	SEED maturation protein PM36 homolog; TENA_THI-4 d	6e-35
1rtw_A	220	Transcriptional activator, putative; PF1337, TENA,	5e-19
2qcx_A	263	Transcriptional activator TENA; UP-DOWN bundle, hy	1e-18
3ibx_A	221	TENA, HP1287, putative thiaminase II; vitamin B1,	1e-16
3mvu_A	226	TENA family transcriptional regulator; TENA/THI-4/	3e-16
2qzc_A	214	Transcriptional activator TENA-1; heme oxygenase-l	2e-14
1udd_A	226	Transcriptional regulator; helix-bundle, lipid bin	3e-14
2gm8_A	221	TENA homolog/THI-4 thiaminase; transcription, tran	8e-14
1z72_A	225	Transcriptional regulator, putative; structu genom	4e-13
3no6_A	248	Transcriptional activator TENA; structural genomic	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2a2m_A	258	Hypothetical protein BT3146; putative TENA family	7e-07

>1wwm_A Hypothetical protein TT2028; TENA/THI-4 family, putative transctiption activator, structu genomics; 2.61A {Thermus thermophilus} SCOP: a.132.1.3 Length = 190

 Score =  136 bits (343), Expect = 5e-41
 Identities = 31/182 (17%), Positives = 62/182 (34%), Gaps = 29/182 (15%)

Query: 3   GQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVEL 62
            QDY FV     +   +L++A +           ++  +    +E+ W   + +      
Sbjct: 36  QQDYPFVEALYRYQVGLLLEAPQAHR------APLVQALMATVEELDWLLLQGASPSAP- 88

Query: 63  SETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE 122
                      Y   LE +    + Y   +  F+ +  ++ E++AH +  +        E
Sbjct: 89  ----VHPVRAGYIALLEEM--GRLPYAYRVVFFYFLNGLFLEAWAHHVPEE----GPWAE 138

Query: 123 VCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFW 182
           + Q W    F    + L+ +A  L E    +                 L R+LE E   W
Sbjct: 139 LSQHWFAPEFQAVLYDLEVLARGLWEDLDPE------------VVRTYLRRILEAEKATW 186

Query: 183 NM 184
           ++
Sbjct: 187 SL 188

>2f2g_A SEED maturation protein PM36 homolog; TENA_THI-4 domain, TENA/THI-4/PQQC family, AT3G16990, struct genomics, protein structure initiative; HET: HMH; 2.10A {Arabidopsis thaliana} SCOP: a.132.1.3 PDB: 2q4x_A* Length = 221

 Score =  121 bits (305), Expect = 6e-35
 Identities = 115/184 (62%), Positives = 130/184 (70%), Gaps = 10/184 (5%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELS 63
           QDY+FVR FV F ASVLI+A K+S +S  D EV+LGG+A L+DEI WFK+E SKW V+ S
Sbjct: 46  QDYLFVRRFVPFVASVLIRACKDSGESS-DMEVVLGGIASLNDEIEWFKREGSKWDVDFS 104

Query: 64  ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEV 123
             VPQ+ANQ Y RFLE LMS EV Y V +T FWAIEAVYQESFAHCLE    TP EL   
Sbjct: 105 TVVPQRANQEYGRFLEDLMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDGNKTPVELTGA 164

Query: 124 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWN 183
           C RWGNDGF QYC S+K IA R LE AS          +VL +AE  L+RVLE EV FW 
Sbjct: 165 CHRWGNDGFKQYCSSVKNIAERCLENAS---------GEVLGEAEDVLVRVLELEVAFWE 215

Query: 184 MSRG 187
           MSRG
Sbjct: 216 MSRG 219

>1rtw_A Transcriptional activator, putative; PF1337, TENA, thiamin, structural genomics, PSI, protein STR initiative; HET: MP5; 2.35A {Pyrococcus furiosus} SCOP: a.132.1.3 Length = 220

 Score = 80.2 bits (197), Expect = 5e-19
 Identities = 38/182 (20%), Positives = 68/182 (37%), Gaps = 18/182 (9%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELS 63
            DY FV+         +     ++ D           +  +  E+  F+K+A + G+ L 
Sbjct: 42  NDYYFVKNA----LRFMALLMAKAPDD--LLPFFAESIYYISKELEMFEKKAQELGISL- 94

Query: 64  ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEV 123
                   + Y  +L S+ S    +    T  +  E  Y E++    E      P  QE 
Sbjct: 95  NGEIDWRAKSYVNYLLSVASLG-SFLEGFTALYCEEKAYYEAWKWVRENLKERSP-YQEF 152

Query: 124 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWN 183
              W +  FG+Y   ++KI N L EK           +   ++A      V + E+ FW+
Sbjct: 153 INHWSSQEFGEYVKRIEKILNSLAEKHG---------EFEKERAREVFKEVSKFELIFWD 203

Query: 184 MS 185
           ++
Sbjct: 204 IA 205

>2qcx_A Transcriptional activator TENA; UP-DOWN bundle, hydrolase; HET: PF1; 2.20A {Bacillus subtilis} PDB: 1yak_A* 1yaf_A* 1to9_A* 1tyh_A Length = 263

 Score = 79.8 bits (196), Expect = 1e-18
 Identities = 28/185 (15%), Positives = 54/185 (29%), Gaps = 18/185 (9%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELS 63
           QD  ++  F    +     A     D      +          E+A  ++ A    +   
Sbjct: 70  QDSYYLTHFAKVQSFGAAYA----KDLYTTGRMASHAQGTYEAEMALHREFAELLEISEE 125

Query: 64  E---TVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPEL 120
           E     P      +   +        ++   +        +Y E     L  D   P   
Sbjct: 126 ERKAFKPSPTAYSFTSHMYR-SVLSGNFAEILAALLPCYWLYYEVGEKLLHCDPGHPI-Y 183

Query: 121 QEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVE 180
           Q+    +G D F Q         + L E ++         ++V  K +   +    +E +
Sbjct: 184 QKWIGTYGGDWFRQQVEEQINRFDELAENST---------EEVRAKMKENFVISSYYEYQ 234

Query: 181 FWNMS 185
           FW M+
Sbjct: 235 FWGMA 239

>3ibx_A TENA, HP1287, putative thiaminase II; vitamin B1, hydrol; 2.40A {Helicobacter pylori} PDB: 2rd3_A Length = 221

 Score = 74.0 bits (181), Expect = 1e-16
 Identities = 28/187 (14%), Positives = 61/187 (32%), Gaps = 20/187 (10%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAG-LHDEIAWFKKEASKWGV-- 60
           QDY+++ E+    A  ++KA       E         +   L++E++       +  +  
Sbjct: 47  QDYLYLLEYAKVFALGVVKA-----CDEAVMREFSNAIQDILNNEMSIHNHYIRELQITQ 101

Query: 61  -ELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCL-EPDTNTPP 118
            EL    P  AN+ Y  ++ +                +    Y     +    P+     
Sbjct: 102 KELQNACPTLANKSYTSYMLAEGFKG-SIKEVAAAVLSCGWSYLVIAQNLSQIPNALEHA 160

Query: 119 ELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHE 178
                 + + +  F    +    + + L   +S            ++K +   I   E+E
Sbjct: 161 FYGHWIKGYSSKEFQACVNWNINLLDSLTLASS---------KQEIEKLKEIFITTSEYE 211

Query: 179 VEFWNMS 185
             FW+M+
Sbjct: 212 YLFWDMA 218

>3mvu_A TENA family transcriptional regulator; TENA/THI-4/PQQC family, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP} Length = 226

 Score = 72.9 bits (178), Expect = 3e-16
 Identities = 33/185 (17%), Positives = 56/185 (30%), Gaps = 13/185 (7%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGV--- 60
           QDY+F+  F    +     A  +S+        +    A + +E+          G+   
Sbjct: 49  QDYVFLIHF----SRAWALAVVKSETHSEMLAAVGTVNALVAEEMQLHIGICEASGISQE 104

Query: 61  ELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPEL 120
            L  T  +  N  Y RF+        D    +         Y E         T+T    
Sbjct: 105 ALFATRERAENLAYTRFVLE-AGYSGDLLDLLAALAPCVMGYGEIGKRLTAEATSTL--Y 161

Query: 121 QEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVE 180
            +    +G D +   C ++  + +  LE+              L +         E EV 
Sbjct: 162 GDWIDTYGGDDYQAACKAVGTLLDDALERRLGAEFTSSPRWSRLCQT---FHTATELEVG 218

Query: 181 FWNMS 185
           FW M 
Sbjct: 219 FWQMG 223

>2qzc_A Transcriptional activator TENA-1; heme oxygenase-like fold, structural genomics, joint center structural genomics, JCSG; 1.50A {Sulfolobus solfataricus P2} Length = 214

 Score = 67.8 bits (165), Expect = 2e-14
 Identities = 21/185 (11%), Positives = 54/185 (29%), Gaps = 28/185 (15%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGV--- 60
           QD  +V +        L+ A  +    +  T+++    +     +    K  SK  +   
Sbjct: 47  QDGKYVEDM----LRALLIASSKGPIDK-VTKILNLVFSSRDKGLETHGKLYSKLDISRD 101

Query: 61  ELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPEL 120
            + +T     N  Y R L    +  +D+   +  +      Y     + ++         
Sbjct: 102 VIVKTGYNLINYAYTRHLYYYAN--LDWNKFLVAWTPCMFGYSIVGDYVIDSPNEV---Y 156

Query: 121 QEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVE 180
           +     + +  + +   ++    + +                         I  +  E+ 
Sbjct: 157 KTWASFYASTEYKKRIEAILYALDEVSITE---------------DLLNIFINSVRFEIG 201

Query: 181 FWNMS 185
           FW+ S
Sbjct: 202 FWDAS 206

>1udd_A Transcriptional regulator; helix-bundle, lipid binding protein; 2.15A {Pyrococcus horikoshii} SCOP: a.132.1.3 Length = 226

 Score = 67.1 bits (163), Expect = 3e-14
 Identities = 26/186 (13%), Positives = 64/186 (34%), Gaps = 23/186 (12%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGV--- 60
           QD+ ++          L     +++      E+I      +  E+  + K   +  +   
Sbjct: 45  QDFNYLVGL----TRALAVISSKAEYPL-MAELIELARDEVTVEVENYVKLLKELDLTLE 99

Query: 61  ELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPEL 120
           +  +T P   N  Y  F+ +  + + +    +T        Y E   +  +   + P ++
Sbjct: 100 DAIKTEPTLVNSAYMDFMLA-TAYKGNIIEGLTALLPCFWSYAEIAEYHKDKLRDNPIKI 158

Query: 121 -QEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEV 179
            +E  + + ++ +      L+KI +              +G     +     I   + E+
Sbjct: 159 YREWGKVYLSNEYLNLVGRLRKIIDS-------------SGHSGYDRLRRIFITGSKFEL 205

Query: 180 EFWNMS 185
            FW M+
Sbjct: 206 AFWEMA 211

>2gm8_A TENA homolog/THI-4 thiaminase; transcription, transferase; HET: HMH; 2.50A {Pyrobaculum aerophilum} SCOP: a.132.1.3 PDB: 2gm7_A* Length = 221

 Score = 66.3 bits (161), Expect = 8e-14
 Identities = 27/186 (14%), Positives = 61/186 (32%), Gaps = 23/186 (12%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGV--- 60
           QDY ++  F    +    +A    D  +   E+  G    +  E+A ++    + G+   
Sbjct: 51  QDYNYLVNFAKALSLAASRAPSV-DLMKTALELAYGT---VTGEMANYEALLKEVGLSLR 106

Query: 61  ELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPEL 120
           + +E  P + N  Y  +L+S  + E  +   +         Y E            P  +
Sbjct: 107 DAAEAEPNRVNVSYMAYLKSTCALE-GFYQCMAALLPCFWSYAEIAERHGGKLRENPVHV 165

Query: 121 -QEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEV 179
            ++    + +  +      L+ + +     A              ++          +E+
Sbjct: 166 YKKWASVYLSPEYRGLVERLRAVLDSSGLSA--------------EELWPYFKEASLYEL 211

Query: 180 EFWNMS 185
           EFW  +
Sbjct: 212 EFWQAA 217

>1z72_A Transcriptional regulator, putative; structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 1.45A {Streptococcus pneumoniae} SCOP: a.132.1.3 PDB: 2a6b_A Length = 225

 Score = 64.4 bits (156), Expect = 4e-13
 Identities = 28/186 (15%), Positives = 57/186 (30%), Gaps = 23/186 (12%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAG-LHDEIAWFKKEASKWGV-- 60
           QDY F   F++   + +  A     D           +     DE  +F+K   +  V  
Sbjct: 56  QDYHFFDAFLSMLGACVAHA-----DKLESKLRFAKQLGFLEADEDGYFQKAFKELKVAE 110

Query: 61  -ELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPE 119
            +  E       + +   + S      DY   + +    E +Y +  +  L         
Sbjct: 111 NDYLEVTLHPVTKAFQDLMYS-AVASSDYAHLLVMLVIAEGLYLDWGSKDLA--LPEVYI 167

Query: 120 LQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEV 179
             E         F ++   L    NR+ +   D           L + +    + +  E+
Sbjct: 168 HSEWINLHRGPFFAEWVQFLVDELNRVGKNRED-----------LTELQQRWNQAVALEL 216

Query: 180 EFWNMS 185
            F+++ 
Sbjct: 217 AFFDIG 222

>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} Length = 248

 Score = 62.1 bits (150), Expect = 3e-12
 Identities = 27/188 (14%), Positives = 59/188 (31%), Gaps = 21/188 (11%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAG-LHDEIAWFKKEASKWGVEL 62
            D  +++EF    A ++ K       S  D + ++  +   L  E+   +  A       
Sbjct: 62  ADASYLKEFTNIYAMLIPKM-----SSMEDVKFLVEQIEFMLEGEVEAHEVLADFINEPY 116

Query: 63  SE----TVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPP 118
            E     V   +   Y + +        +    I        VY       +E       
Sbjct: 117 EEIVKEKVWPPSGDHYIKHMYFNAFARENAAFTIAAMAPCPYVYAVIGKRAMEDPKLNKE 176

Query: 119 EL-QEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEH 177
            +  +  Q +  +   +      ++ +RL +  S+            K+ +   ++   H
Sbjct: 177 SVTSKWFQFYSTE-MDELVDVFDQLMDRLTKHCSET---------EKKEIKENFLQSTIH 226

Query: 178 EVEFWNMS 185
           E  F+NM+
Sbjct: 227 ERHFFNMA 234

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 5e-07
 Identities = 21/139 (15%), Positives = 52/139 (37%), Gaps = 28/139 (20%)

Query: 62  LSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQ 121
           L  T+  K  ++  +F+E ++    +Y       + +  +  E      +P   T   ++
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRI--NYK------FLMSPIKTE----QRQPSMMTRMYIE 114

Query: 122 EVCQRW-GNDGFGQY----CHSLKKIANRLLEKASDDLI----MGKAGDDVLKKAEV--- 169
           +  + +  N  F +Y         K+   LLE      +    +  +G   +   +V   
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-ALDVCLS 173

Query: 170 -ELIRVLEHEVEFW-NMSR 186
            ++   ++ ++ FW N+  
Sbjct: 174 YKVQCKMDFKI-FWLNLKN 191

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 5e-04
 Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 50/194 (25%)

Query: 20  LIKAWKESDDSEGDTEVILGGMAG-------------------LHDEIAW--FKKEASKW 58
           L +A  E   ++    V++ G+ G                   +  +I W   K   S  
Sbjct: 140 LRQALLELRPAKN---VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-- 194

Query: 59  GVELSETVPQKANQVYCRFLESLMS-PEVDYTVAITVFWAIEA----VYQESFAHCLEPD 113
                ETV +   ++  +   +  S  +    + + +          +  + + +CL   
Sbjct: 195 ----PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-- 248

Query: 114 TNTPPELQEVCQRWGNDGFGQYCHSL-----KKIANRLLEKASDDLIMGKAGDDVLKKAE 168
                 L  V      + F   C  L     K++ + L    +  + +       L   E
Sbjct: 249 -----VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH-SMTLTPDE 302

Query: 169 VE--LIRVLEHEVE 180
           V+  L++ L+   +
Sbjct: 303 VKSLLLKYLDCRPQ 316

>2a2m_A Hypothetical protein BT3146; putative TENA family transcriptional regulator, structural G joint center for structural genomics; 1.88A {Bacteroides thetaiotaomicron} SCOP: a.132.1.3 PDB: 2a2o_A Length = 258

 Score = 47.1 bits (111), Expect = 7e-07
 Identities = 17/187 (9%), Positives = 42/187 (22%), Gaps = 33/187 (17%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELS 63
           QD  +        A+    A  E               A       + +     W +  +
Sbjct: 90  QDGYYCFRGRDDYATAATCAQDE------TLREFFKAKAK--SYDEYNETYHQTWHLREA 141

Query: 64  ETVPQK-ANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE 122
             +      + Y  +   +            V    E ++                    
Sbjct: 142 SGLIPGTDIKDYADYEAYVAGSL-ASPYMCVVMLPCEYLWPWIANFLDGYTPTNSL---- 196

Query: 123 VCQRW--GNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELI--RVLEHE 178
             + W   N G     + +  +  +  +K                + +   I    + +E
Sbjct: 197 -YRFWIEWNGGTPNGAYQMGNMLEQYRDKID--------------EDKAVEIFNTAMNYE 241

Query: 179 VEFWNMS 185
           ++ +  S
Sbjct: 242 LKVFTSS 248

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	189
d2f2ga1	215	a.132.1.3 (A:5-219) Seed maturation protein-relate	3e-28
d1wwma1	180	a.132.1.3 (A:11-190) Hypothetical protein TTHA0169	9e-28
d1rtwa_	206	a.132.1.3 (A:) Putative transcriptional activator	5e-18
d1to9a_	225	a.132.1.3 (A:) Transcriptional activator TenA {Bac	2e-16
d1udda_	215	a.132.1.3 (A:) Hypothetical transcriptional regula	3e-16
d1z72a1	217	a.132.1.3 (A:4-220) Putative transcriptional regul	1e-15
d2gm8a1	211	a.132.1.3 (A:2-212) TenA homolog PAE0170 {Archaeon	2e-14
d2a2ma1	231	a.132.1.3 (A:10-240) Hypothetical protein BT3146 {	4e-14

>d2f2ga1 a.132.1.3 (A:5-219) Seed maturation protein-related At3g16990 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 215

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: Seed maturation protein-related At3g16990
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  103 bits (257), Expect = 3e-28
 Identities = 115/184 (62%), Positives = 130/184 (70%), Gaps = 10/184 (5%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELS 63
           QDY+FVR FV F ASVLI+A K+S +S  D EV+LGG+A L+DEI WFK+E SKW V+ S
Sbjct: 42  QDYLFVRRFVPFVASVLIRACKDSGESS-DMEVVLGGIASLNDEIEWFKREGSKWDVDFS 100

Query: 64  ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEV 123
             VPQ+ANQ Y RFLE LMS EV Y V +T FWAIEAVYQESFAHCLE    TP EL   
Sbjct: 101 TVVPQRANQEYGRFLEDLMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDGNKTPVELTGA 160

Query: 124 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWN 183
           C RWGNDGF QYC S+K IA R LE AS          +VL +AE  L+RVLE EV FW 
Sbjct: 161 CHRWGNDGFKQYCSSVKNIAERCLENAS---------GEVLGEAEDVLVRVLELEVAFWE 211

Query: 184 MSRG 187
           MSRG
Sbjct: 212 MSRG 215

>d1wwma1 a.132.1.3 (A:11-190) Hypothetical protein TTHA0169 (TT2028) {Thermus thermophilus [TaxId: 274]} Length = 180

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: Hypothetical protein TTHA0169 (TT2028)
species: Thermus thermophilus [TaxId: 274]

 Score =  100 bits (251), Expect = 9e-28
 Identities = 31/181 (17%), Positives = 60/181 (33%), Gaps = 29/181 (16%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELS 63
           QDY FV     +   +L++A +           ++  +    +E+ W   + +       
Sbjct: 27  QDYPFVEALYRYQVGLLLEAPQA------HRAPLVQALMATVEELDWLLLQGASPSAP-- 78

Query: 64  ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEV 123
                     Y   LE +      Y   +  F+ +  ++ E++AH +           E+
Sbjct: 79  ---VHPVRAGYIALLEEMGRL--PYAYRVVFFYFLNGLFLEAWAHHVPE----EGPWAEL 129

Query: 124 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWN 183
            Q W    F    + L+ +A  L E    +                 L R+LE E   W+
Sbjct: 130 SQHWFAPEFQAVLYDLEVLARGLWEDLDPE------------VVRTYLRRILEAEKATWS 177

Query: 184 M 184
           +
Sbjct: 178 L 178

>d1rtwa_ a.132.1.3 (A:) Putative transcriptional activator PF1337 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 206

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: Putative transcriptional activator PF1337
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 76.0 bits (186), Expect = 5e-18
 Identities = 40/182 (21%), Positives = 71/182 (39%), Gaps = 18/182 (9%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELS 63
            DY FV+  + F A ++ KA  +              +  +  E+  F+K+A + G+   
Sbjct: 42  NDYYFVKNALRFMALLMAKAPDD------LLPFFAESIYYISKELEMFEKKAQELGIS-L 94

Query: 64  ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEV 123
                   + Y  +L S+ S    +    T  +  E  Y E++    E      P  QE 
Sbjct: 95  NGEIDWRAKSYVNYLLSVASLG-SFLEGFTALYCEEKAYYEAWKWVRENLKERSP-YQEF 152

Query: 124 CQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWN 183
              W +  FG+Y   ++KI N L EK  +            ++A      V + E+ FW+
Sbjct: 153 INHWSSQEFGEYVKRIEKILNSLAEKHGEF---------EKERAREVFKEVSKFELIFWD 203

Query: 184 MS 185
           ++
Sbjct: 204 IA 205

>d1to9a_ a.132.1.3 (A:) Transcriptional activator TenA {Bacillus subtilis [TaxId: 1423]} Length = 225

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: Transcriptional activator TenA
species: Bacillus subtilis [TaxId: 1423]

 Score = 71.7 bits (175), Expect = 2e-16
 Identities = 28/185 (15%), Positives = 54/185 (29%), Gaps = 18/185 (9%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGV--- 60
           QD  ++  F    +     A            +          E+A  ++ A    +   
Sbjct: 42  QDSYYLTHFAKVQSFGAAYAKDLYTT----GRMASHAQGTYEAEMALHREFAELLEISEE 97

Query: 61  ELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPEL 120
           E     P      Y   +   +    ++   +        +Y E     L  D   P   
Sbjct: 98  ERKAFKPSPTAYSYTSHMYRSVLSG-NFAEILAALLPCYWLYYEVGEKLLHCDPGHPI-Y 155

Query: 121 QEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVE 180
           Q+    +G D F Q         + L E ++++         V  K +   +    +E +
Sbjct: 156 QKWIGTYGGDWFRQQVEEQINRFDELAENSTEE---------VRAKMKENFVISSYYEYQ 206

Query: 181 FWNMS 185
           FW M+
Sbjct: 207 FWGMA 211

>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator PH1161 {Pyrococcus horikoshii [TaxId: 53953]} Length = 215

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: Hypothetical transcriptional regulator PH1161
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 71.3 bits (174), Expect = 3e-16
 Identities = 29/186 (15%), Positives = 64/186 (34%), Gaps = 23/186 (12%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELS 63
           QD+ ++       A +  KA           E+I      +  E+  + K   +  + L 
Sbjct: 45  QDFNYLVGLTRALAVISSKAEYPLM-----AELIELARDEVTVEVENYVKLLKELDLTLE 99

Query: 64  E---TVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPEL 120
           +   T P   N  Y  F+ +  + + +    +T        Y E   +  +   + P ++
Sbjct: 100 DAIKTEPTLVNSAYMDFMLA-TAYKGNIIEGLTALLPCFWSYAEIAEYHKDKLRDNPIKI 158

Query: 121 -QEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEV 179
            +E  + + ++ +      L+KI +              +G     +     I   + E+
Sbjct: 159 YREWGKVYLSNEYLNLVGRLRKIIDS-------------SGHSGYDRLRRIFITGSKFEL 205

Query: 180 EFWNMS 185
            FW M+
Sbjct: 206 AFWEMA 211

>d1z72a1 a.132.1.3 (A:4-220) Putative transcriptional regulator SP0716 (SPr0628) {Streptococcus pneumoniae [TaxId: 1313]} Length = 217

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: Putative transcriptional regulator SP0716 (SPr0628)
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 69.8 bits (170), Expect = 1e-15
 Identities = 28/185 (15%), Positives = 57/185 (30%), Gaps = 21/185 (11%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELS 63
           QDY F   F++   + +  A    D  E              DE  +F+K   +  V  +
Sbjct: 50  QDYHFFDAFLSMLGACVAHA----DKLESKLRFAKQLGFLEADEDGYFQKAFKELKVAEN 105

Query: 64  E---TVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPEL 120
           +          + +   + S      DY   + +    E +Y +  +  L          
Sbjct: 106 DYLEVTLHPVTKAFQDLMYS-AVASSDYAHLLVMLVIAEGLYLDWGSKDLALPEVYI--H 162

Query: 121 QEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVE 180
            E         F ++   L    NR+ +   D           L + +    + +  E+ 
Sbjct: 163 SEWINLHRGPFFAEWVQFLVDELNRVGKNRED-----------LTELQQRWNQAVALELA 211

Query: 181 FWNMS 185
           F+++ 
Sbjct: 212 FFDIG 216

>d2gm8a1 a.132.1.3 (A:2-212) TenA homolog PAE0170 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 211

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: TenA homolog PAE0170
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 66.3 bits (161), Expect = 2e-14
 Identities = 24/186 (12%), Positives = 58/186 (31%), Gaps = 23/186 (12%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGV--- 60
           QDY ++  F    +    +A       +     +      +  E+A ++    + G+   
Sbjct: 41  QDYNYLVNFAKALSLAASRA----PSVDLMKTALELAYGTVTGEMANYEALLKEVGLSLR 96

Query: 61  ELSETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPEL 120
           + +E  P + N  Y  +L+S  + E  +   +         Y E            P  +
Sbjct: 97  DAAEAEPNRVNVSYMAYLKSTCALE-GFYQCMAALLPCFWSYAEIAERHGGKLRENPVHV 155

Query: 121 -QEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEV 179
            ++    + +  +      L+ + +     A              ++          +E+
Sbjct: 156 YKKWASVYLSPEYRGLVERLRAVLDSSGLSA--------------EELWPYFKEASLYEL 201

Query: 180 EFWNMS 185
           EFW  +
Sbjct: 202 EFWQAA 207

>d2a2ma1 a.132.1.3 (A:10-240) Hypothetical protein BT3146 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 231

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: Hypothetical protein BT3146
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 65.8 bits (160), Expect = 4e-14
 Identities = 17/185 (9%), Positives = 43/185 (23%), Gaps = 29/185 (15%)

Query: 4   QDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELS 63
           QD  +        A+    A  + +      +         ++           W +  +
Sbjct: 69  QDGYYCFRGRDDYATAATCA--QDETLREFFKAKAKSYDEYNETYH------QTWHLREA 120

Query: 64  E-TVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQE 122
              +P    + Y  +   +            V    E ++                    
Sbjct: 121 SGLIPGTDIKDYADYEAYVAGSL-ASPYMCVVMLPCEYLWPWIANFLDGYTPTNSL---- 175

Query: 123 VCQRW--GNDGFGQYCHSLKKIANRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVE 180
             + W   N G     + +  +  +  +K                KA       + +E++
Sbjct: 176 -YRFWIEWNGGTPNGAYQMGNMLEQYRDKID------------EDKAVEIFNTAMNYELK 222

Query: 181 FWNMS 185
            +  S
Sbjct: 223 VFTSS 227

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d1to9a_	225	Transcriptional activator TenA {Bacillus subtilis	100.0
d1wwma1	180	Hypothetical protein TTHA0169 (TT2028) {Thermus th	100.0
d2f2ga1	215	Seed maturation protein-related At3g16990 {Thale c	100.0
d1rtwa_	206	Putative transcriptional activator PF1337 {Archaeo	100.0
d1udda_	215	Hypothetical transcriptional regulator PH1161 {Pyr	100.0
d2gm8a1	211	TenA homolog PAE0170 {Archaeon Pyrobaculum aerophi	100.0
d2a2ma1	231	Hypothetical protein BT3146 {Bacteroides thetaiota	100.0
d1z72a1	217	Putative transcriptional regulator SP0716 (SPr0628	100.0
d1rcwa_	213	Hypothetical protein CT610 {Chlamydia trachomatis	99.79
d1otva_	254	Coenzyme PQQ synthesis protein C, PqqC {Klebsiella	99.58
d1wzda1	207	Heme oxygenase HmuO {Corynebacterium diphtheriae [	87.77

>d1to9a_ a.132.1.3 (A:) Transcriptional activator TenA {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: Transcriptional activator TenA
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.3e-39  Score=242.43  Aligned_cols=170  Identities=18%  Similarity=0.168  Sum_probs=154.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCC---CCCCHHHHHHHH
Q ss_conf             921249999999999999972104778897326999998885599-9999999999970999888---877456799999
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLH-DEIAWFKKEASKWGVELSE---TVPQKANQVYCR   76 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~-~E~~~h~~~~~~~gi~~~~---~~~~p~~~aY~~   76 (189)
                      ||+||++||.+|+|+++.+++|+|++     +++..+.+.+.++. .|+++|+++++.+|++.++   .+|+|+|++|++
T Consensus        39 yl~QD~~yl~~~~r~~a~~~~ka~~~-----~~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~~~~~~~~p~~~~y~~  113 (225)
T d1to9a_          39 YVLQDSYYLTHFAKVQSFGAAYAKDL-----YTTGRMASHAQGTYEAEMALHREFAELLEISEEERKAFKPSPTAYSYTS  113 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSSH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHH
T ss_conf             99999999999999999998549976-----8999999999999999999999999992999888850576631216899


Q ss_pred             HHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             9997359--95369999999999999999987214599999981699998741796799999999999999973226244
Q 029678           77 FLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDL  154 (189)
Q Consensus        77 ~l~~~~~--~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~~~~~  154 (189)
                      ||++++.  ++..+++||+||.|+|..+++.+...    .+.+++|++||++|++|+|.+.|+++++++|++++.+++  
T Consensus       114 ~l~~~a~~~~~~~~l~Al~~ce~~Y~~~~~~~~~~----~~~~~~y~~wi~~~~~~~f~~~~~~~~~~ld~~~~~~~~--  187 (225)
T d1to9a_         114 HMYRSVLSGNFAEILAALLPCYWLYYEVGEKLLHC----DPGHPIYQKWIGTYGGDWFRQQVEEQINRFDELAENSTE--  187 (225)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC----CCSSHHHHHHHHHHHSTTTTTHHHHHHHHHHHHHHTSCH--
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCH--
T ss_conf             99998845988999999999999999999998752----667740799997016811689999999999999876899--


Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             3033406899999999999999999875753358
Q 029678          155 IMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT  188 (189)
Q Consensus       155 ~~~~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay~~  188 (189)
                             ++++++.++|+++|+||++||||||++
T Consensus       188 -------~~~~~~~~~f~~~~~lE~~Fwd~ay~~  214 (225)
T d1to9a_         188 -------EVRAKMKENFVISSYYEYQFWGMAYRK  214 (225)
T ss_dssp             -------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             -------999999999999999999999988406

>d1wwma1 a.132.1.3 (A:11-190) Hypothetical protein TTHA0169 (TT2028) {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: Hypothetical protein TTHA0169 (TT2028)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.7e-39  Score=239.38  Aligned_cols=156  Identities=18%  Similarity=0.240  Sum_probs=137.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             92124999999999999997210477889732699999888559999999999999709998888774567999999997
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLES   80 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~~~~~~p~~~aY~~~l~~   80 (189)
                      ||+||++||.+|+|+++++++|+|+      +++..+.+.+.++.+|+.+|+..++++|     ++++|+|++|++||++
T Consensus        24 YL~QD~~yl~~~~r~~a~~~~ka~~------~~~~~~~~~~~~~~~E~~~~~~~~~~~~-----~~~~p~~~~Y~~~l~~   92 (180)
T d1wwma1          24 WLQQDYPFVEALYRYQVGLLLEAPQ------AHRAPLVQALMATVEELDWLLLQGASPS-----APVHPVRAGYIALLEE   92 (180)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHCCH------HHHHHHHHHHHHHHHHHHHHHTTTCCSS-----SCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHH
T ss_conf             9998999999999999999982998------9999999999899999999999888669-----9998589999999998


Q ss_pred             HCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCCC
Q ss_conf             359-9536999999999999999998721459999998169999874179679999999999999997322624430334
Q 029678           81 LMS-PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGKA  159 (189)
Q Consensus        81 ~~~-~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~~~~~~~~~~  159 (189)
                      ++. ++.+++++++||.|+|..+|....   +    .+|||++||++|+||+|.++|.++++++|+.+...++       
T Consensus        93 ~a~~~~~~~l~al~pc~~~Y~~~~~~~~---~----~~~~y~eWI~~y~~~~F~~~v~~l~~~vd~~~~~~~~-------  158 (180)
T d1wwma1          93 MGRLPYAYRVVFFYFLNGLFLEAWAHHV---P----EEGPWAELSQHWFAPEFQAVLYDLEVLARGLWEDLDP-------  158 (180)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHS---C----SSSHHHHHHHHHSCTTHHHHHHHHHHHHHHHHTTSCH-------
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHC---C----CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCH-------
T ss_conf             7466729999999999999999999752---1----3763899998729988999999999999998603999-------


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             068999999999999999998757533
Q 029678          160 GDDVLKKAEVELIRVLEHEVEFWNMSR  186 (189)
Q Consensus       160 ~~~~~~~l~~~F~~~~~lE~~Fwd~Ay  186 (189)
                        +   ++.++|++++++|++||||++
T Consensus       159 --~---~~~~~F~~~~~lE~~FW~m~l  180 (180)
T d1wwma1         159 --E---VVRTYLRRILEAEKATWSLLL  180 (180)
T ss_dssp             --H---HHHHHHHHHHHHHHHHHHTTC
T ss_pred             --H---HHHHHHHHHHHHHHHHHHHCC
T ss_conf             --9---999999999999999975049

>d2f2ga1 a.132.1.3 (A:5-219) Seed maturation protein-related At3g16990 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: Seed maturation protein-related At3g16990
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6.6e-39  Score=239.77  Aligned_cols=174  Identities=55%  Similarity=0.851  Sum_probs=150.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             92124999999999999997210477889732699999888559999999999999709998888774567999999997
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLES   80 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~~~~~~p~~~aY~~~l~~   80 (189)
                      ||+|||+||.+|+|+++++++|+|++++. ......+.+......+|+.+|...++.+|++.+..+++|+|++|++||.+
T Consensus        39 Yl~QDy~yl~~~~r~~a~~~~ka~~~~~~-~~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~p~~~~y~~~l~~  117 (215)
T d2f2ga1          39 WLGQDYLFVRRFVPFVASVLIRACKDSGE-SSDMEVVLGGIASLNDEIEWFKREGSKWDVDFSTVVPQRANQEYGRFLED  117 (215)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCSC-TTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHH
T ss_conf             99999999999999999998868997999-99999999999999999999999987558668760565679999999999


Q ss_pred             HCC---CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHC
Q ss_conf             359---95369999999999999999987214599999981699998741796799999999999999973226244303
Q 029678           81 LMS---PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMG  157 (189)
Q Consensus        81 ~~~---~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~~~~~~~~  157 (189)
                      +++   ++..++++++||.|+|..+++.+....   .+.+++|++||++|+|++|.+.|.++++++|++++.+++     
T Consensus       118 ~~~~~~~~~~~l~al~pc~~~Y~~~~~~~~~~~---~~~~~~y~~Wi~~y~~~~f~~~v~~~~~~ld~~~~~~~~-----  189 (215)
T d2f2ga1         118 LMSSEVKYPVIMTAFWAIEAVYQESFAHCLEDG---NKTPVELTGACHRWGNDGFKQYCSSVKNIAERCLENASG-----  189 (215)
T ss_dssp             TTSTTSCHHHHHHHHHHHHHHHHHHTTTHHHHH---HTSSSCCCHHHHHHSSHHHHHHHHHHHHHHHHHHHTCCH-----
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCH-----
T ss_conf             874269999999999999999999999987556---767641899999968831799999999999999876999-----


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             340689999999999999999987575335
Q 029678          158 KAGDDVLKKAEVELIRVLEHEVEFWNMSRG  187 (189)
Q Consensus       158 ~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay~  187 (189)
                          +++++++++|+++|+||++||||||+
T Consensus       190 ----~~~~~~~~~F~~~~~lE~~Fwd~Ay~  215 (215)
T d2f2ga1         190 ----EVLGEAEDVLVRVLELEVAFWEMSRG  215 (215)
T ss_dssp             ----HHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             ----99999999999999999999855469

>d1rtwa_ a.132.1.3 (A:) Putative transcriptional activator PF1337 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: Putative transcriptional activator PF1337
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=3.8e-38  Score=235.42  Aligned_cols=166  Identities=22%  Similarity=0.297  Sum_probs=150.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             92124999999999999997210477889732699999888559999999999999709998888774567999999997
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELSETVPQKANQVYCRFLES   80 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~~~~~~p~~~aY~~~l~~   80 (189)
                      ||+|||+||.+|+|+++.+++|+|+.      .+..+...+..+..|+.+|..+++++|++.+. +|+|+|++|++||.+
T Consensus        39 yl~QDy~yl~~~~r~~a~~~~~~~~~------~~~~~~~~~~~~~~E~~~~~~~~~~~g~~~~~-~~~p~~~~y~~~l~~  111 (206)
T d1rtwa_          39 WLVNDYYFVKNALRFMALLMAKAPDD------LLPFFAESIYYISKELEMFEKKAQELGISLNG-EIDWRAKSYVNYLLS  111 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCGG------GHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSS-CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCHHHHHHHHHHHH
T ss_conf             99999999999889999998629968------99999999888889999999999981986334-346047899999999


Q ss_pred             HCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
Q ss_conf             359--953699999999999999999872145999999816999987417967999999999999999732262443033
Q 029678           81 LMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMGK  158 (189)
Q Consensus        81 ~~~--~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~~~~~~~~~  158 (189)
                      ++.  ++..+++||+||.|+|..+++......    +++++|++||+.|+|++|.++|.++++++|++++.+++      
T Consensus       112 ~a~~~~~~~~~~al~~~e~~Y~~~~~~~~~~~----~~~~~y~~wi~~~~~~~~~~~~~~~~~~~d~~~~~~~~------  181 (206)
T d1rtwa_         112 VASLGSFLEGFTALYCEEKAYYEAWKWVRENL----KERSPYQEFINHWSSQEFGEYVKRIEKILNSLAEKHGE------  181 (206)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHC----SSCCTTHHHHHHHHSHHHHHHHHHHHHHHHHHHHTSCH------
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCH------
T ss_conf             87469878899999999999999999876426----66885888999867877899999999999999976999------


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4068999999999999999998757533
Q 029678          159 AGDDVLKKAEVELIRVLEHEVEFWNMSR  186 (189)
Q Consensus       159 ~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay  186 (189)
                         +++++++++|+++++||++||||||
T Consensus       182 ---~~~~~~~~~F~~~~~lE~~Fwd~ay  206 (206)
T d1rtwa_         182 ---FEKERAREVFKEVSKFELIFWDIAY  206 (206)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             ---9999999999999999999987439

>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator PH1161 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: Hypothetical transcriptional regulator PH1161
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.4e-38  Score=237.87  Aligned_cols=169  Identities=17%  Similarity=0.138  Sum_probs=146.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC---CCCCHHHHHHHHH
Q ss_conf             9212499999999999999721047788973269999988855999999999999970999888---8774567999999
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELSE---TVPQKANQVYCRF   77 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~~---~~~~p~~~aY~~~   77 (189)
                      ||+||++||.+|+|+++.+++|++++     +.+.++...+..+..|+++|.++++++|++.++   .+|+|+|++|++|
T Consensus        42 yl~QD~~yl~~~~r~~a~~~~ka~~~-----~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~~~~~~~~~~~~~y~~~  116 (215)
T d1udda_          42 YVLQDFNYLVGLTRALAVISSKAEYP-----LMAELIELARDEVTVEVENYVKLLKELDLTLEDAIKTEPTLVNSAYMDF  116 (215)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCTT-----HHHHHHHHHHHHTTHHHHHHHHHHHHTTCCHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHH
T ss_conf             99998999999999999998725609-----9999999999999999999999999909998784424753256799999


Q ss_pred             HHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             997359--953699999999999999999872145999999816999987417967999999999999999732262443
Q 029678           78 LESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLI  155 (189)
Q Consensus        78 l~~~~~--~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~~~~~~  155 (189)
                      |++++.  ++..+++||+||.|+|..+++.+.....  .+++++|++||+.|++|+|.++|+++++++|++    ++   
T Consensus       117 l~~~a~~~~~~~~l~al~~c~~~Y~~~~~~~~~~~~--~~~~~~y~~Wi~~y~~~~f~~~v~~l~~~~d~~----~~---  187 (215)
T d1udda_         117 MLATAYKGNIIEGLTALLPCFWSYAEIAEYHKDKLR--DNPIKIYREWGKVYLSNEYLNLVGRLRKIIDSS----GH---  187 (215)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTHHHHT--TCSCHHHHHHHHGGGSHHHHHHHHHHHHHHHTS----CS---
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHC----CH---
T ss_conf             999871798877999999999999999999987436--688742699998747879999999999999867----98---


Q ss_pred             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             0334068999999999999999998757533589
Q 029678          156 MGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGTA  189 (189)
Q Consensus       156 ~~~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay~~~  189 (189)
                            +++++++++|+++|++|++||||||++.
T Consensus       188 ------~~~~~~~~iF~~~~~lE~~Fwd~ay~~~  215 (215)
T d1udda_         188 ------SGYDRLRRIFITGSKFELAFWEMAWRGG  215 (215)
T ss_dssp             ------SCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf             ------8999999999999999999999987288

>d2gm8a1 a.132.1.3 (A:2-212) TenA homolog PAE0170 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: TenA homolog PAE0170
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=1.6e-37  Score=231.81  Aligned_cols=167  Identities=16%  Similarity=0.120  Sum_probs=147.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCC---CCCCHHHHHHHH
Q ss_conf             921249999999999999972104778897326999998885599-9999999999970999888---877456799999
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLH-DEIAWFKKEASKWGVELSE---TVPQKANQVYCR   76 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~-~E~~~h~~~~~~~gi~~~~---~~~~p~~~aY~~   76 (189)
                      ||+||++||.+|.|+++.+++|+|++     +.+..+...+.... .|+.+|+.+++++|++.++   .+|+|+|++|++
T Consensus        38 yl~QD~~yl~~~~r~la~~~~~~~~~-----~~~~~~~~~~~~~~~~E~~~~~~~~~~~gi~~~~~~~~~~~~~~~~y~~  112 (211)
T d2gm8a1          38 YLLQDYNYLVNFAKALSLAASRAPSV-----DLMKTALELAYGTVTGEMANYEALLKEVGLSLRDAAEAEPNRVNVSYMA  112 (211)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSH-----HHHHHHHHHHHHHHHTHHHHHHHHHHHTTCCHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHHH
T ss_conf             99999999999999999998749976-----9999999999999999999999999994969888853587234546899


Q ss_pred             HHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             9997359--95369999999999999999987214599999981699998741796799999999999999973226244
Q 029678           77 FLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDL  154 (189)
Q Consensus        77 ~l~~~~~--~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~~~~~  154 (189)
                      ||++++.  ++..+++||+||.|+|..+++.+.....  ..++++|++||+.|+|++|.+.|+++++++|+..       
T Consensus       113 ~l~~~a~~~~~~~~l~al~~c~~~Y~~~~~~~~~~~~--~~~~~~y~~wi~~~~~~~f~~~v~~l~~~ld~~~-------  183 (211)
T d2gm8a1         113 YLKSTCALEGFYQCMAALLPCFWSYAEIAERHGGKLR--ENPVHVYKKWASVYLSPEYRGLVERLRAVLDSSG-------  183 (211)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHGGGGG--GCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHTSS-------
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCH-------
T ss_conf             9999883698898999999999999999999986534--4588728999997088889999999999985582-------


Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             3033406899999999999999999875753358
Q 029678          155 IMGKAGDDVLKKAEVELIRVLEHEVEFWNMSRGT  188 (189)
Q Consensus       155 ~~~~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay~~  188 (189)
                             ++++++.++|+++|++|++||||||++
T Consensus       184 -------~~~~~~~~~f~~~~~lE~~Fwd~ay~~  210 (211)
T d2gm8a1         184 -------LSAEELWPYFKEASLYELEFWQAAYEG  210 (211)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             -------109999999999999999999997725

>d2a2ma1 a.132.1.3 (A:10-240) Hypothetical protein BT3146 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: Hypothetical protein BT3146
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=100.00  E-value=1.2e-37  Score=232.45  Aligned_cols=161  Identities=11%  Similarity=-0.004  Sum_probs=138.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHH
Q ss_conf             9212499999999999999721047788973269999988855999999999999970999888-877456799999999
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHDEIAWFKKEASKWGVELSE-TVPQKANQVYCRFLE   79 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~E~~~h~~~~~~~gi~~~~-~~~~p~~~aY~~~l~   79 (189)
                      ||+|||+||.+|+|+++++++|+|+.     +.+..+...+   ..|+++|+.+++++|++..+ .+++|+|++|++||+
T Consensus        66 YL~QDy~YL~~~~r~~a~~~aka~~~-----~~~~~~~~~~---~~e~~l~~~~~~~~gi~~~~~~~~~p~t~aY~~~l~  137 (231)
T d2a2ma1          66 LMVQDGYYCFRGRDDYATAATCAQDE-----TLREFFKAKA---KSYDEYNETYHQTWHLREASGLIPGTDIKDYADYEA  137 (231)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSH-----HHHHHHHHHH---HHHHHHHHHHHHTSCBCCGGGBCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHH---HHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHH
T ss_conf             99989999999999999998759998-----9999999999---999999999999849974531798758999999999


Q ss_pred             HHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHC
Q ss_conf             7359--95369999999999999999987214599999981699998741796799999999999999973226244303
Q 029678           80 SLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDLIMG  157 (189)
Q Consensus        80 ~~~~--~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~~~~~~~~  157 (189)
                      +++.  ++.++++||+||.|+|.++|+.+...    ..++++|++||++|  ++|.++|+++++++|+.+...+      
T Consensus       138 ~~a~~~~~~~~laallpC~w~Y~~ig~~l~~~----~~~~~~y~~WI~~y--~~f~~~v~~~~~~ld~~~~~~~------  205 (231)
T d2a2ma1         138 YVAGSLASPYMCVVMLPCEYLWPWIANFLDGY----TPTNSLYRFWIEWN--GGTPNGAYQMGNMLEQYRDKID------  205 (231)
T ss_dssp             HHHHHSCTHHHHHHHHHHHHHHHHHHHHHGGG----SCTTSTTHHHHHHH--CSCCHHHHHHHHHHHTTGGGSC------
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCHHHHHHHC--HHHHHHHHHHHHHHHHHHCCCC------
T ss_conf             98826999999999999999999999987744----78898469997817--0389999999999998735168------


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             340689999999999999999987575335
Q 029678          158 KAGDDVLKKAEVELIRVLEHEVEFWNMSRG  187 (189)
Q Consensus       158 ~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay~  187 (189)
                            .+++.++|+++|+||++|||||+-
T Consensus       206 ------~e~~~~iF~~~~~lE~~Fwd~A~~  229 (231)
T d2a2ma1         206 ------EDKAVEIFNTAMNYELKVFTSSTI  229 (231)
T ss_dssp             ------HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             ------999999999999999999987253

>d1z72a1 a.132.1.3 (A:4-220) Putative transcriptional regulator SP0716 (SPr0628) {Streptococcus pneumoniae [TaxId: 1313]}

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: TENA/THI-4
domain: Putative transcriptional regulator SP0716 (SPr0628)
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=1.5e-36  Score=226.31  Aligned_cols=165  Identities=14%  Similarity=0.128  Sum_probs=147.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCC---CCCCHHHHHHHH
Q ss_conf             921249999999999999972104778897326999998885599-9999999999970999888---877456799999
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLH-DEIAWFKKEASKWGVELSE---TVPQKANQVYCR   76 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~-~E~~~h~~~~~~~gi~~~~---~~~~p~~~aY~~   76 (189)
                      ||+||++||.+|.|+++.+++|+|+.     +.+..+...+..+. +|+.+|+++++++|++.++   .+|+|+|++|++
T Consensus        47 yl~Qdy~yl~~~~r~la~~~~ka~~~-----~~~~~~~~~~~~~~~~e~~~~~~~~~~~gi~~~~~~~~~~~p~t~~y~~  121 (217)
T d1z72a1          47 YLIQDYHFFDAFLSMLGACVAHADKL-----ESKLRFAKQLGFLEADEDGYFQKAFKELKVAENDYLEVTLHPVTKAFQD  121 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCHHHHHHHH
T ss_conf             99999999999999999998719985-----8899999999999987789999999990989666024577838669999


Q ss_pred             HHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf             9997359--95369999999999999999987214599999981699998741796799999999999999973226244
Q 029678           77 FLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKASDDL  154 (189)
Q Consensus        77 ~l~~~~~--~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~~~~~  154 (189)
                      ||.+++.  ++..+++||.||.|+|..+++...   .  .+++++|++||++|++|+|.+.|+++++++|+++.  ++  
T Consensus       122 ~l~~~a~~~~~~~~l~al~~~~~~Y~~~~~~~~---~--~~~~~~y~~wi~~~~~~~f~~~v~~l~~~ld~~~~--~~--  192 (217)
T d1z72a1         122 LMYSAVASSDYAHLLVMLVIAEGLYLDWGSKDL---A--LPEVYIHSEWINLHRGPFFAEWVQFLVDELNRVGK--NR--  192 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHHTCSS---C--CCSSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHC---C--
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH---C--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC--CH--
T ss_conf             999987259999999999999999999998986---3--88875177999980998799999999999998829--99--


Q ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             30334068999999999999999998757533
Q 029678          155 IMGKAGDDVLKKAEVELIRVLEHEVEFWNMSR  186 (189)
Q Consensus       155 ~~~~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay  186 (189)
                             ++++++.++|++++++|++||||||
T Consensus       193 -------~~~~~~~~~f~~~~~lE~~Fwd~ay  217 (217)
T d1z72a1         193 -------EDLTELQQRWNQAVALELAFFDIGY  217 (217)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             -------9999999999999999999976249

>d1rcwa_ a.132.1.4 (A:) Hypothetical protein CT610 {Chlamydia trachomatis [TaxId: 813]}

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: PqqC-like
domain: Hypothetical protein CT610
species: Chlamydia trachomatis [TaxId: 813]

Probab=99.79  E-value=8.8e-20  Score=130.02  Aligned_cols=167  Identities=12%  Similarity=0.059  Sum_probs=119.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCCCCC---CCCCHHHHH
Q ss_conf             92124999999999999997210477889732699999888559----99999999999970999888---877456799
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGL----HDEIAWFKKEASKWGVELSE---TVPQKANQV   73 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~----~~E~~~h~~~~~~~gi~~~~---~~~~p~~~a   73 (189)
                      |++|||+|+..|.|+++.+++++|++     +.+..+.+.+...    ..+..++..+++.+|++.++   .+|.|+|.+
T Consensus        37 ~~~Q~y~~v~~f~r~la~~~~~~~~~-----~~~~~l~~~l~~e~~~~~~h~~l~~~~~~~~g~~~~~~~~~~~~p~t~a  111 (213)
T d1rcwa_          37 YAKDYYLHIKAFPKYLSAIHSRCDDL-----EARKLLLDNLMDEENGYPNHIDLWKQFVFALGVTPEELEAHEPSEAAKA  111 (213)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHTTCCCH-----HHHHHHHHHHHHHHSSSSCHHHHHHHHHHHTTCCHHHHHHCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             99999999999999999998844543-----7788999999988624430599999999980799999730210047789


Q ss_pred             HHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             9999997359--9536999999999999999998721459999-998169999874179679999999999999997322
Q 029678           74 YCRFLESLMS--PEVDYTVAITVFWAIEAVYQESFAHCLEPDT-NTPPELQEVCQRWGNDGFGQYCHSLKKIANRLLEKA  150 (189)
Q Consensus        74 Y~~~l~~~~~--~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~-~~~~~y~~Wi~~y~s~~f~~~v~~l~~~~d~~~~~~  150 (189)
                      |+++|++++.  +...++++++||.|+|..++..+........ -++..-..|.+.|     .+....-.+.++++....
T Consensus       112 ~~~~~~~~~~~~~~~~~~a~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~D~~H~~~~~~l~~~~  186 (213)
T d1rcwa_         112 KVATFMRWCTGDSLAAGVAALYSYESQIPRIAREKIRGLTEYFGFSNPEDYAYFTEH-----EEADVRHAREEKALIEML  186 (213)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSCCCSGGGGHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHC
T ss_conf             999999998141389999999999999998999999988871799847776877999-----999999999999999877


Q ss_pred             CHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             624430334068999999999999999998757533
Q 029678          151 SDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSR  186 (189)
Q Consensus       151 ~~~~~~~~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay  186 (189)
                      ++         ++++++.++|.+++++|+.|||..+
T Consensus       187 ~~---------~~~~~~~~~~~~~~~~~~~f~D~~l  213 (213)
T d1rcwa_         187 LK---------DDADKVLEASQEVTQSLYGFLDSFL  213 (213)
T ss_dssp             CS---------SCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CH---------HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99---------9999999999999999999986369

>d1otva_ a.132.1.4 (A:) Coenzyme PQQ synthesis protein C, PqqC {Klebsiella pneumoniae [TaxId: 573]}

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: PqqC-like
domain: Coenzyme PQQ synthesis protein C, PqqC
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.58  E-value=3.6e-16  Score=109.30  Aligned_cols=164  Identities=7%  Similarity=-0.046  Sum_probs=117.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHCCCCCC----CCCCHH
Q ss_conf             9212499999999999999721047788973269999988855999-9-----99999999970999888----877456
Q 029678            1 MQGQDYIFVREFVAFAASVLIKAWKESDDSEGDTEVILGGMAGLHD-E-----IAWFKKEASKWGVELSE----TVPQKA   70 (189)
Q Consensus         1 YL~QD~~YL~~y~r~~a~~~~ka~~~~~~~~~~~~~~~~~~~~~~~-E-----~~~h~~~~~~~gi~~~~----~~~~p~   70 (189)
                      |+.|+|+|+..|.|.++.+++++|++     +....+++.+....+ +     .+++.++++.+|++.++    .++.|+
T Consensus        45 y~~Q~y~y~~~f~r~laai~a~~~d~-----~~r~~ll~nl~ee~g~~~~~~H~~l~~~f~~~lGl~~e~v~~~~~~lp~  119 (254)
T d1otva_          45 WVANRFYYQTTIPLKDAAIMANCPDA-----QTRRKWVQRILDHDGSHGEDGGIEAWLRLGEAVGLSRDDLLSERHVLPG  119 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCCH-----HHHHHHHHHHHHHHCSTTCCCHHHHHHHHHHHTTCCHHHHHTCTTCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCHH
T ss_conf             99999999998699999999539988-----9999999999988556677637799999999909999997334668889


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCHHHH-------HHHHHHHHHH
Q ss_conf             799999999735995369999999999999999987214599999981699998741796799-------9999999999
Q 029678           71 NQVYCRFLESLMSPEVDYTVAITVFWAIEAVYQESFAHCLEPDTNTPPELQEVCQRWGNDGFG-------QYCHSLKKIA  143 (189)
Q Consensus        71 ~~aY~~~l~~~~~~~~~~~~al~pc~~~y~~i~~~~~~~~~~~~~~~~~y~~Wi~~y~s~~f~-------~~v~~l~~~~  143 (189)
                      |+.+++++.+.+. ... .....+|++++..+.. +...+   ...-+.|.+||+.++-+.|.       .-++...+++
T Consensus       120 t~~~v~~~~~~~~-~~~-~~~~~a~~~~E~~~p~-i~~~~---~~gl~~~y~~i~~~~l~~F~~h~~~d~~h~e~~~~l~  193 (254)
T d1otva_         120 VRFAVDAYLNFAR-RAC-WQEAACSSLTELFAPQ-IHQSR---LDSWPQHYPWIKEEGYFYFRSRLSQANRDVEHGLALA  193 (254)
T ss_dssp             HHHHHHHHHHHHH-HSC-HHHHHHGGGGGGGCCS-TTCCS---SCSSTTTCTTSCHHHHHHHHHHHHTCCSCTTHHHHHH
T ss_pred             HHHHHHHHHHHHC-CCC-HHHHHHHHHHHHHHHH-HHHHH---HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999863-343-8899999999998299-99999---9878986576688887899997987189899999999


Q ss_pred             HHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9997322624430334068999999999999999998757533
Q 029678          144 NRLLEKASDDLIMGKAGDDVLKKAEVELIRVLEHEVEFWNMSR  186 (189)
Q Consensus       144 d~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~~~lE~~Fwd~Ay  186 (189)
                      ++++.  ++         ++++++.+++..+|+++|.|||..|
T Consensus       194 ~~~~~--t~---------e~q~~~l~a~~~s~~~lw~flD~~~  225 (254)
T d1otva_         194 KAYCD--SA---------EKQNRMLEILQFKLDILWSMLDAMT  225 (254)
T ss_dssp             HHHCC--SH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHC--CH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99839--99---------9999999999999999999999999

>d1wzda1 a.132.1.1 (A:7-213) Heme oxygenase HmuO {Corynebacterium diphtheriae [TaxId: 1717]}

class: All alpha proteins
fold: Heme oxygenase-like
superfamily: Heme oxygenase-like
family: Eukaryotic type heme oxygenase
domain: Heme oxygenase HmuO
species: Corynebacterium diphtheriae [TaxId: 1717]

Probab=87.77  E-value=0.66  Score=21.67  Aligned_cols=87  Identities=16%  Similarity=0.116  Sum_probs=44.9

Q ss_pred             HHHHCCCCC---CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-------HHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf             997099988---887745679999999973599536999999999999-------9999987214599999981699998
Q 029678           55 ASKWGVELS---ETVPQKANQVYCRFLESLMSPEVDYTVAITVFWAIE-------AVYQESFAHCLEPDTNTPPELQEVC  124 (189)
Q Consensus        55 ~~~~gi~~~---~~~~~p~~~aY~~~l~~~~~~~~~~~~al~pc~~~y-------~~i~~~~~~~~~~~~~~~~~y~~Wi  124 (189)
                      +..+|.+.+   ..+|+|.+.+|++++..++. ..+-..+|--+|..|       ..|++.+....  +.  ++.-..+.
T Consensus        81 L~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~-~~~p~~llg~~Yv~e~G~~~GGq~i~k~l~~~l--~l--~~~~~~fy  155 (207)
T d1wzda1          81 LDKLNGSSEWRSRITASPAVIDYVNRLEEIRD-NVDGPALVAHHYVRYLGDLSGGQVIARMMQRHY--GV--DPEALGFY  155 (207)
T ss_dssp             HHHHHSSSTHHHHCCCCHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CC--CGGGCGGG
T ss_pred             HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC--CCCCCCCC
T ss_conf             99974983221257877459999999998743-489999999999999987401189999999972--99--98776100


Q ss_pred             HHHCCHHHHHHHHHHHHHHHHH
Q ss_conf             7417967999999999999999
Q 029678          125 QRWGNDGFGQYCHSLKKIANRL  146 (189)
Q Consensus       125 ~~y~s~~f~~~v~~l~~~~d~~  146 (189)
                      .++..++-..+-..+++.+|.+
T Consensus       156 ~f~~~~~~~~~k~~~r~~l~~~  177 (207)
T d1wzda1         156 HFEGIAKLKVYKDEYREKLNNL  177 (207)
T ss_dssp             CCTTCSCHHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCC
T ss_conf             0588677999999999998635