Citrus Sinensis ID: 029679

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEVPTLGI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccEEccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHHHHcccccccccccccccccEEEEccccccccHHHHHccccHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccccccccccccccccccccccccccEEEEccccccccccccccccHHHHHcccccEEEcHccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEcccccccHHHHHHcccHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mdvsslsttpraclsssstestplkrgelpsghdgflsFSWIrrntnaqpvfgktrslvqnKTSLKVLCSQQREIPVVEARCMDEVYDALAQRllptsalasnvnvkhivglagppgagkstLAAEVVRRINKiwpqkassfdsqvkppdvatvlpmdgfhLYLSqldamedpkeaharrggevptlgi
Flexible Loop (DISEMBL)
mdvsslsttpraclsssstestplkrgelpsgHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVglagppgagKSTLAAEVVRRINKIwpqkassfdsqvkPPDVATVLPMDGFHLYLSQLDAMEDPKEAHarrggevptlgi
Low Complexity Region (SEG)
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEVPTLGI
Disordered region (IsUnstruct)
**********************************GFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK***********DVATVLPMDGFHLYLSQ***********************
Disordered Region (DISOPRED)
***********A**********************GFLSFSWIR***************************************MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA*******KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEVPTLGI
Disordered Region (DISEMBL)
****************************LPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK********KPPDVATVLPMDGFHLYLSQLDAMED*****************
Disordered Region (DISPRO)
********************STPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS******KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEVP*L**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEVPTLGI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
Q9UTC5	235	Putative uridine kinase C	yes	no	0.333	0.268	0.4	9e-09
C5DNG5	347	ATP-dependent kinase YFH7	yes	no	0.486	0.265	0.294	2e-06
Q6CNA8	353	ATP-dependent kinase YFH7	yes	no	0.174	0.093	0.575	3e-05
Q6FUM2	345	ATP-dependent kinase YFH7	yes	no	0.126	0.069	0.612	0.0006
C5DXG0	375	ATP-dependent kinase YFH7	yes	no	0.296	0.149	0.351	0.0007
P43591	353	ATP-dependent kinase YFH7	yes	no	0.169	0.090	0.531	0.0008
A7A245	353	ATP-dependent kinase YFH7	N/A	no	0.169	0.090	0.531	0.0008
B5VI33	353	ATP-dependent kinase YFH7	N/A	no	0.169	0.090	0.531	0.0008
C7GYB3	353	ATP-dependent kinase YFH7	N/A	no	0.169	0.090	0.531	0.0008
B3LUL5	353	ATP-dependent kinase YFH7	N/A	no	0.169	0.090	0.531	0.0008

>sp|Q9UTC5|YIDE_SCHPO Putative uridine kinase C227.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.14 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 12/75 (16%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++GLAG PG+GKSTL A +     K W ++  S        ++  ++PMDGFH  L +LD
Sbjct: 31  LIGLAGGPGSGKSTLCAILA----KAWNERFGS--------EIVKIIPMDGFHYSLEELD 78

Query: 169 AMEDPKEAHARRGGE 183
             ++P++A A RG E
Sbjct: 79  RFDNPEKARALRGAE 93

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 8

>sp|C5DNG5|YFH7_LACTC ATP-dependent kinase YFH7 OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=YFH7 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 20/112 (17%)

Query: 75  IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129
           IP  E + + +V +        Q   P   +  N   + +VG+ G P +           
Sbjct: 81  IPKFEEKSLHDVQNGFFNHVQDQDFQPKKFVDKNDGSEVVVGIGGLPNS----------I 130

Query: 130 RINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
           R+  + P + S+ D ++     A ++PMDGFHL    LD  +DP EAH RRG
Sbjct: 131 RVENVAPLEPSNHDYKI-----AKIVPMDGFHLSRRHLDHFDDPVEAHRRRG 177

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) (taxid: 559295)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q6CNA8|YFH7_KLULA ATP-dependent kinase YFH7 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=YFH7 PE=3 SV=1

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
           PD+A ++PMDGFHL    LD  +DP  AH RRG
Sbjct: 143 PDIAQIVPMDGFHLSRKHLDHFKDPTVAHLRRG 175

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|Q6FUM2|YFH7_CANGA ATP-dependent kinase YFH7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YFH7 PE=3 SV=1

 Score = 43.9 bits (102), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
           +A VLPMDGFHL    LD   DP+ AH RRG
Sbjct: 148 IAEVLPMDGFHLSRECLDHFSDPQWAHLRRG 178

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|C5DXG0|YFH7_ZYGRC ATP-dependent kinase YFH7 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=YFH7 PE=3 SV=1

 Score = 43.9 bits (102), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 18/74 (24%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167
            I+G  G P A   +         N + P + SSF         A ++PMDGFHL    L
Sbjct: 156 QILGRGGLPNAFTIS---------NDVEPDEESSF---------AQIVPMDGFHLSRQCL 197

Query: 168 DAMEDPKEAHARRG 181
            + ++P+EAH RRG
Sbjct: 198 SSFQNPQEAHKRRG 211

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (taxid: 559307)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|P43591|YFH7_YEAST ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFH7 PE=1 SV=1

 Score = 43.5 bits (101), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
           ++A ++PMDGFHL    LD  +DP+ AH RRG
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRG 185

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|A7A245|YFH7_YEAS7 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain YJM789) GN=YFH7 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
           ++A ++PMDGFHL    LD  +DP+ AH RRG
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRG 185

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|B5VI33|YFH7_YEAS6 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=YFH7 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
           ++A ++PMDGFHL    LD  +DP+ AH RRG
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRG 185

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain AWRI1631) (taxid: 545124)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|C7GYB3|YFH7_YEAS2 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain JAY291) GN=YFH7 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
           ++A ++PMDGFHL    LD  +DP+ AH RRG
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRG 185

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain JAY291) (taxid: 574961)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|B3LUL5|YFH7_YEAS1 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=YFH7 PE=3 SV=1

 Score = 43.5 bits (101), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 23/32 (71%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
           ++A ++PMDGFHL    LD  +DP+ AH RRG
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRG 185

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain RM11-1a) (taxid: 285006)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
255559925	312	ATP binding protein, putative [Ricinus c	0.952	0.576	0.666	1e-58
225437219	312	PREDICTED: putative uridine kinase C227.	0.719	0.435	0.742	8e-54
297843102	301	phosphoribulokinase/uridine kinase [Arab	0.888	0.558	0.576	6e-48
42561642	301	P-loop containing nucleoside triphosphat	0.899	0.564	0.549	2e-47
449519647	251	PREDICTED: putative uridine kinase C227.	0.825	0.621	0.584	4e-47
449452236	309	PREDICTED: putative uridine kinase C227.	0.825	0.504	0.584	4e-47
4587575	270	Belongs to PF|01121 Uncharacterized prot	0.878	0.614	0.540	4e-47
224082738	231	predicted protein [Populus trichocarpa]	0.529	0.432	0.79	3e-40
356572241	309	PREDICTED: ATP-dependent kinase YFH7-lik	0.910	0.556	0.505	3e-40
255633506	233	unknown [Glycine max]	0.910	0.738	0.505	3e-40

>gi|255559925|ref|XP_002520981.1| ATP binding protein, putative [Ricinus communis] gi|223539818|gb|EEF41398.1| ATP binding protein, putative [Ricinus communis]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 122/183 (66%), Positives = 143/183 (78%), Gaps = 3/183 (1%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGK-TRSLV 59
           M+VSSLS T RAC  S +TES  LKR   PS H   +S S  +R +  Q +F + T   V
Sbjct: 1   MEVSSLSITSRACPFSPATESLLLKRIRRPSLHQCLVSISLNKRTS--QSLFSRQTGPTV 58

Query: 60  QNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAG 119
             + S+KVLCS +R++PVVEA  M E+YDALA+R+LP +A ASN N+KHIVGLAGPPGAG
Sbjct: 59  FKENSIKVLCSLRRDVPVVEASSMGEIYDALAERILPAAAAASNPNLKHIVGLAGPPGAG 118

Query: 120 KSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179
           KST+A+EVVRR+NKIWPQKASSFDSQVKPPDVA VLPMDGFHLY SQLDAME+P EAHAR
Sbjct: 119 KSTIASEVVRRVNKIWPQKASSFDSQVKPPDVAAVLPMDGFHLYRSQLDAMENPDEAHAR 178

Query: 180 RGG 182
           RG 
Sbjct: 179 RGA 181

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437219|ref|XP_002281875.1| PREDICTED: putative uridine kinase C227.14 [Vitis vinifera] gi|297735493|emb|CBI17933.3| unnamed protein product [Vitis vinifera]

 Score =  215 bits (547), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 101/136 (74%), Positives = 116/136 (85%)

Query: 47  NAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNV 106
           + QP+FG TRS    ++ LKV CSQ+ EIPVV+ RCMDE+YD LA+RLLPT+A+ASN N+
Sbjct: 46  SVQPLFGGTRSQFGRESCLKVSCSQKGEIPVVDGRCMDEIYDTLAERLLPTAAVASNPNL 105

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
           K IVGLAGPPGAGKSTLA+EV  R+NK+WPQKASSFDSQV PPDVA VLPMDGFHLY  Q
Sbjct: 106 KRIVGLAGPPGAGKSTLASEVAWRVNKLWPQKASSFDSQVGPPDVAAVLPMDGFHLYRHQ 165

Query: 167 LDAMEDPKEAHARRGG 182
           LDAMEDP+EAHARRG 
Sbjct: 166 LDAMEDPEEAHARRGA 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843102|ref|XP_002889432.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata] gi|297335274|gb|EFH65691.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata]

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 106/184 (57%), Positives = 127/184 (69%), Gaps = 16/184 (8%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQ 60
           M+VSS ST PR C S S          EL S   GF    W       Q +     S  +
Sbjct: 1   MEVSSFSTVPRYCNSRSFV-------AEL-SRFRGFNVHLW------DQSLVPLHLSFRK 46

Query: 61  NKTSLKVL--CSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGA 118
            KT+ + L  CSQ++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGA
Sbjct: 47  RKTTPRFLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGA 106

Query: 119 GKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178
           GKSTLA EVVRR+NK+WPQKASSFD++VKP DVA VLPMDGFHLY SQLDAMEDPKEAHA
Sbjct: 107 GKSTLANEVVRRVNKLWPQKASSFDAEVKPSDVAIVLPMDGFHLYRSQLDAMEDPKEAHA 166

Query: 179 RRGG 182
           RRG 
Sbjct: 167 RRGA 170

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42561642|ref|NP_171802.2| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|63147412|gb|AAY34179.1| At1g03030 [Arabidopsis thaliana] gi|108385285|gb|ABF85769.1| At1g03030 [Arabidopsis thaliana] gi|110737366|dbj|BAF00628.1| hypothetical protein [Arabidopsis thaliana] gi|332189396|gb|AEE27517.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/182 (54%), Positives = 124/182 (68%), Gaps = 12/182 (6%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQ 60
           M+VSS ST PR C S S        RG        F    W   + +  P+    R   +
Sbjct: 1   MEVSSFSTVPRYCNSRSFVPELSRFRG--------FKVHLW---DQSLVPLHFSIRKR-K 48

Query: 61  NKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
           N     + CSQ++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGAGK
Sbjct: 49  NTPRYLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 108

Query: 121 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
           ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct: 109 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 168

Query: 181 GG 182
           G 
Sbjct: 169 GA 170

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519647|ref|XP_004166846.1| PREDICTED: putative uridine kinase C227.14-like [Cucumis sativus]

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 93/159 (58%), Positives = 121/159 (76%), Gaps = 3/159 (1%)

Query: 24  LKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCM 83
           +K   +P  H+ FLSF+   +  +     G+T    +    + V CSQ+RE  VVE RC+
Sbjct: 23  VKEKPVPRDHN-FLSFNSAYKYRSLH--CGQTNGFCRKNKCVTVFCSQKREFSVVEGRCI 79

Query: 84  DEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           D++YD LA+RLLPT+A AS+ ++K+IVGLAGPPGAGK+T+A+EVV+R+NK+WPQKASS D
Sbjct: 80  DDIYDDLARRLLPTAAAASDPDLKYIVGLAGPPGAGKTTIASEVVQRLNKLWPQKASSMD 139

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGG 182
           SQV P DVA VLPMDGFHLY SQLD+ME+P+EAHARRG 
Sbjct: 140 SQVNPADVAAVLPMDGFHLYRSQLDSMENPEEAHARRGA 178

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452236|ref|XP_004143866.1| PREDICTED: putative uridine kinase C227.14-like [Cucumis sativus]

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 93/159 (58%), Positives = 121/159 (76%), Gaps = 3/159 (1%)

Query: 24  LKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCM 83
           +K   +P  H+ FLSF+   +  +     G+T    +    + V CSQ+RE  VVE RC+
Sbjct: 23  VKEKPVPRDHN-FLSFNSAYKYRSLH--CGQTNGFCRKNKCVTVFCSQKREFSVVEGRCI 79

Query: 84  DEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           D++YD LA+RLLPT+A AS+ ++K+IVGLAGPPGAGK+T+A+EVV+R+NK+WPQKASS D
Sbjct: 80  DDIYDDLARRLLPTAAAASDPDLKYIVGLAGPPGAGKTTIASEVVQRLNKLWPQKASSMD 139

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGG 182
           SQV P DVA VLPMDGFHLY SQLD+ME+P+EAHARRG 
Sbjct: 140 SQVNPADVAAVLPMDGFHLYRSQLDSMENPEEAHARRGA 178

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4587575|gb|AAD25806.1|AC006550_14 Belongs to PF|01121 Uncharacterized protein family UPF0038 containing ATP/GTP binding domain. ESTs gb|AA585719, gb|AA728503 and gb|T22272 come from this gene [Arabidopsis thaliana]

 Score =  192 bits (489), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 101/187 (54%), Positives = 128/187 (68%), Gaps = 21/187 (11%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQ 60
           M+VSS ST PR C S S         G+    +   L F +I              S  +
Sbjct: 1   MEVSSFSTVPRYCNSRSFVP------GDSKFTYGTNLLFLFI--------------SAFE 40

Query: 61  NKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
           N+ +  V+C Q++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGAGK
Sbjct: 41  NERTPLVIC-QKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 99

Query: 121 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
           ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct: 100 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 159

Query: 181 GGEVPTL 187
           G  VP+ 
Sbjct: 160 GVYVPSF 166

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082738|ref|XP_002306820.1| predicted protein [Populus trichocarpa] gi|222856269|gb|EEE93816.1| predicted protein [Populus trichocarpa]

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/100 (79%), Positives = 89/100 (89%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
           MDE+YDALA RLLPT+  ASN N K+IV LAGPPGAGKSTLA+E+V R+N++WPQKASSF
Sbjct: 1   MDEIYDALAIRLLPTAPAASNPNFKYIVALAGPPGAGKSTLASEIVHRVNRLWPQKASSF 60

Query: 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGG 182
           D QVKPPDVA VLPMDGFHLY SQLDAME+P+EAHARRG 
Sbjct: 61  DLQVKPPDVAAVLPMDGFHLYRSQLDAMENPEEAHARRGA 100

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572241|ref|XP_003554278.1| PREDICTED: ATP-dependent kinase YFH7-like [Glycine max]

 Score =  170 bits (430), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/188 (50%), Positives = 121/188 (64%), Gaps = 16/188 (8%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPL------KRGELPSGHDGFLSFSWIRRNTNAQPVFGK 54
           M+ +  STT R   + +   + PL       R   PS      S S  R +   Q    +
Sbjct: 1   MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPS------SLSIARPSKFVQLSLAR 54

Query: 55  TRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAG 114
           TR      +  KVL +++ +I VVE   +DE+YDAL  R+LP  +++SN N K +VGLAG
Sbjct: 55  TR----KSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAG 110

Query: 115 PPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174
           PPGAGKSTLA EV RRINK+WP+KASSFDSQV+ PDVA V+PMDGFHLY S+LD ME+P+
Sbjct: 111 PPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPE 170

Query: 175 EAHARRGG 182
           EAHARRG 
Sbjct: 171 EAHARRGA 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255633506|gb|ACU17111.1| unknown [Glycine max]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/188 (50%), Positives = 121/188 (64%), Gaps = 16/188 (8%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPL------KRGELPSGHDGFLSFSWIRRNTNAQPVFGK 54
           M+ +  STT R   + +   + PL       R   PS      S S  R +   Q    +
Sbjct: 1   MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPS------SLSIARPSKFVQLSLAR 54

Query: 55  TRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAG 114
           TR      +  KVL +++ +I VVE   +DE+YDAL  R+LP  +++SN N K +VGLAG
Sbjct: 55  TR----KSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAG 110

Query: 115 PPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174
           PPGAGKSTLA EV RRINK+WP+KASSFDSQV+ PDVA V+PMDGFHLY S+LD ME+P+
Sbjct: 111 PPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPE 170

Query: 175 EAHARRGG 182
           EAHARRG 
Sbjct: 171 EAHARRGA 178

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
TAIR|locus:2007544	301	AT1G03030 [Arabidopsis thalian	0.894	0.561	0.569	4.8e-46
ASPGD|ASPL0000094429	583	AN11942 [Emericella nidulans (	0.513	0.166	0.383	3.1e-10
POMBASE|SPAC227.14	235	SPAC227.14 "uridine kinase (pr	0.333	0.268	0.4	9.9e-09
UNIPROTKB|G4MQ63	236	MGG_02303 "Phosphoribulokinase	0.455	0.364	0.391	1e-08
ASPGD|ASPL0000074767	234	AN4382 [Emericella nidulans (t	0.365	0.294	0.389	1.8e-07
CGD|CAL0002107	226	orf19.7061 [Candida albicans (	0.343	0.287	0.412	4.7e-07

TAIR|locus:2007544 AT1G03030 [Arabidopsis thaliana (taxid:3702)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 103/181 (56%), Positives = 127/181 (70%)

Query:     1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQ 60
             M+VSS ST PR C S S     P    EL S   GF    W   + +  P+    R   +
Sbjct:     1 MEVSSFSTVPRYCNSRSFV---P----EL-SRFRGFKVHLW---DQSLVPLHFSIRKR-K 48

Query:    61 NKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
             N     + CSQ++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGAGK
Sbjct:    49 NTPRYLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 108

Query:   121 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
             ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct:   109 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 168

Query:   181 G 181
             G
Sbjct:   169 G 169

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=ISS

GO:0016301 "kinase activity" evidence=IEA;ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

ASPGD|ASPL0000094429 AN11942 [Emericella nidulans (taxid:162425)]

 Score = 155 (59.6 bits), Expect = 3.1e-10, P = 3.1e-10
 Identities = 41/107 (38%), Positives = 65/107 (60%)

Query:    83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS 140
             M+E Y ALA ++  TS   S+   +++V +AG PG+GK+TLA  V  +IN+  +   K++
Sbjct:     1 MEEQYAALASKI--TSLATSHQKPRYLVAVAGAPGSGKTTLATAVAAQINRSGLLSHKST 58

Query:   141 S-FDSQVKPPDVAT---VLPMDGFHLYLSQLDAMEDPK--EAHARRG 181
             +  D   +  ++A    VL MDGFHL  S+LD + + +  EA+ RRG
Sbjct:    59 NQSDDNSQTNEIAKRALVLSMDGFHLPRSELDTLPNKERTEAYVRRG 105

GO:0006059 "hexitol metabolic process" evidence=RCA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=RCA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

POMBASE|SPAC227.14 SPAC227.14 "uridine kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 137 (53.3 bits), Expect = 9.9e-09, P = 9.9e-09
 Identities = 30/75 (40%), Positives = 45/75 (60%)

Query:   109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
             ++GLAG PG+GKSTL A +     K W ++  S        ++  ++PMDGFH  L +LD
Sbjct:    31 LIGLAGGPGSGKSTLCAILA----KAWNERFGS--------EIVKIIPMDGFHYSLEELD 78

Query:   169 AMEDPKEAHARRGGE 183
               ++P++A A RG E
Sbjct:    79 RFDNPEKARALRGAE 93

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|G4MQ63 MGG_02303 "Phosphoribulokinase/uridine kinase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 137 (53.3 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 36/92 (39%), Positives = 52/92 (56%)

Query:    90 LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 149
             LA+++     LA     + ++G+AG PGAGK+TLA  VV  +  I   +  + D +    
Sbjct:     9 LAKKVWARYKLAEPTK-RILIGIAGIPGAGKTTLARRVVDELKAIQLAEDGTADGEF--- 64

Query:   150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
                T +PMDG+HL  +QL AM DP+ A  RRG
Sbjct:    65 --VTDIPMDGYHLTRAQLAAMPDPEMAIHRRG 94

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000074767 AN4382 [Emericella nidulans (taxid:162425)]

 Score = 131 (51.2 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 30/77 (38%), Positives = 47/77 (61%)

Query:   105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
             N + ++ ++G PG+GK+ LA  + RRIN    +K  + +  +    +A  +PMDG+HL  
Sbjct:    22 NARLLIAVSGIPGSGKTELAITMARRIN----EKHGAQNGDL----IAAAIPMDGYHLTR 73

Query:   165 SQLDAMEDPKEAHARRG 181
             +QL  M DP+ A ARRG
Sbjct:    74 AQLAQMPDPEYAAARRG 90

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

CGD|CAL0002107 orf19.7061 [Candida albicans (taxid:5476)]

 Score = 128 (50.1 bits), Expect = 4.7e-07, P = 4.7e-07
 Identities = 33/80 (41%), Positives = 45/80 (56%)

Query:   102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH 161
             S+   ++++ LAG PG+GK+T A  + +R+        S+F   V       VL  DGFH
Sbjct:    29 SDSQPRYLISLAGVPGSGKTTFANAIAKRL--------STFAKVV-------VLSQDGFH 73

Query:   162 LYLSQLDAMEDPKEAHARRG 181
             LY S+L  M DPKEA  RRG
Sbjct:    74 LYRSELTLMADPKEAFRRRG 93


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.377    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      189       189   0.00089  110 3  11 23  0.48    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  154 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.11u 0.10s 20.21t   Elapsed:  00:00:01
  Total cpu time:  20.11u 0.10s 20.21t   Elapsed:  00:00:01
  Start:  Sat May 11 07:04:14 2013   End:  Sat May 11 07:04:15 2013

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	189
PRK09270	229	PRK09270, PRK09270, nucleoside triphosphate hydrol	3e-15
COG1072	283	COG1072, CoaA, Panthothenate kinase [Coenzyme meta	1e-10
pfam13207	114	pfam13207, AAA_17, AAA domain	4e-05
COG1703	323	COG1703, ArgK, Putative periplasmic protein kinase	2e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	6e-04
cd02023	198	cd02023, UMPK, Uridine monophosphate kinase (UMPK,	9e-04
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	0.002
pfam13238	128	pfam13238, AAA_18, AAA domain	0.002
COG0572	218	COG0572, Udk, Uridine kinase [Nucleotide transport	0.003
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	0.004
pfam03308	267	pfam03308, ArgK, ArgK protein	0.004

>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed

 Score = 70.7 bits (174), Expect = 3e-15
 Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 14/94 (14%)

Query: 78  VEARCMDEVYDALAQRLLP-TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP 136
           V+A+  DE  +A+ + LL   +AL +    + IVG+AGPPGAGKSTLA  +   + +   
Sbjct: 3   VQAQYRDEEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQ--- 59

Query: 137 QKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAM 170
                          A  +PMDGFHL  + LDA 
Sbjct: 60  ----------DGELPAIQVPMDGFHLDNAVLDAH 83

Length = 229

>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism]

 Score = 58.4 bits (142), Expect = 1e-10
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 17/83 (20%)

Query: 100 LASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 158
           L +N      I+G+AG    GKST  A +++ +   WP+           P V  V  MD
Sbjct: 74  LGTNNQQRPFIIGIAGSVAVGKSTT-ARILQALLSRWPES----------PKVDLV-TMD 121

Query: 159 GFHLYLSQLDAMEDPKEAHARRG 181
           GFH   + LD         AR+G
Sbjct: 122 GFHYPNAVLDER----GLMARKG 140

Length = 283

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           I+ + GPPG+GKSTLA ++  ++ 
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLG 24

Length = 114

>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130
           R I +VE+R  D    ALA+ LL   AL       H++G+ G PGAGKSTL   + R 
Sbjct: 21  RAITLVESRRPDH--RALARELL--RALYPRTGNAHVIGITGVPGAGKSTLIEALGRE 74

Length = 323

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 38.1 bits (88), Expect = 6e-04
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
             ++ + GPPG+GK+TLA  + R +  
Sbjct: 2   GEVILIVGPPGSGKTTLARALARELGP 28

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2

 Score = 38.3 bits (90), Expect = 9e-04
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 20/69 (28%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G+AG  G+GK+T+A E++ ++                      ++  D ++  LS   
Sbjct: 1   IIGIAGGSGSGKTTVAEEIIEQLGNPK----------------VVIISQDSYYKDLS--- 41

Query: 169 AMEDPKEAH 177
             E+ +E  
Sbjct: 42  -HEELEERK 49

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. Length = 198

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 89  ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAA 125
           A++ RL P SA    V    I+ L GP GAGKSTL A
Sbjct: 7   AVSTRLGPLSAE---VRAGEILHLVGPNGAGKSTLLA 40

Length = 248

>gnl|CDD|222000 pfam13238, AAA_18, AAA domain

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 110 VGLAGPPGAGKSTLAAEVVRR----INKIWPQKASSFDSQVKPPDVATVLPMD 158
           + + G PG+GK+TLA E+  R    +  +  +     +   +  D +  L  D
Sbjct: 1   ILITGTPGSGKTTLAKELAERLGDVLRDLAKENGLVLELDEEITDESKRLDED 53

Length = 128

>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism]

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 16/59 (27%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167
           I+G+AG  G+GK+T+A E+  ++                      V+ +D ++   S L
Sbjct: 10  IIGIAGGSGSGKTTVAKELSEQLGVEKV----------------VVISLDDYYKDQSHL 52

Length = 218

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 36.0 bits (83), Expect = 0.004
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 8/51 (15%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133
            +E  +AL +              K+++ L GPPG GK+TLA  +   + +
Sbjct: 3   QEEAIEALRE-------ALELPPPKNLL-LYGPPGTGKTTLARAIANELFR 45

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|112137 pfam03308, ArgK, ArgK protein

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 8/51 (15%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTL 123
           R I +VE+R         A+ LL    L       H VG+ G PGAGKSTL
Sbjct: 3   RAITLVESR------RPEARELL--RRLMPLTGRAHRVGITGVPGAGKSTL 45

The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems. Length = 267

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
COG1123	539	ATPase components of various ABC-type transport sy	99.93
COG4172	534	ABC-type uncharacterized transport system, duplica	99.91
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.89
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.89
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.87
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.86
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.85
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.84
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.83
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.82
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.8
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.8
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.8
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.79
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.78
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.78
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.78
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.78
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.78
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.78
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.77
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.77
COG4525	259	TauB ABC-type taurine transport system, ATPase com	99.77
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.76
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.76
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.76
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.74
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.74
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.74
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.74
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.74
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.74
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.74
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.74
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.74
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.74
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.73
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.73
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.73
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.73
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.73
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.73
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.73
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.73
COG4181	228	Predicted ABC-type transport system involved in ly	99.73
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.73
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	99.72
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.72
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.72
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.72
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.72
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.72
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.72
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.72
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.72
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.72
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.72
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.72
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.71
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.71
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.71
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.71
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.71
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.71
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	99.71
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.71
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.71
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.71
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.71
PRK10908	222	cell division protein FtsE; Provisional	99.71
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.71
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.71
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.7
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.7
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.7
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.7
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.7
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.7
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.7
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.7
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.7
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.7
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.7
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.7
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.7
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.7
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.7
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.7
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.7
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.7
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.7
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.7
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.7
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.7
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.69
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.69
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.69
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.69
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.69
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.69
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.69
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.69
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.69
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.69
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.69
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.69
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.69
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.69
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.69
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.69
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.69
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.69
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.68
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.68
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.68
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.68
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.68
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.68
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.68
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.68
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.68
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.68
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.68
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.68
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.68
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.68
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.68
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.68
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.68
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.68
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.68
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.68
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.68
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.68
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.68
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.67
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.67
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.67
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.67
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.67
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.67
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.67
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.67
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.67
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.67
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.67
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.67
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.67
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.67
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.67
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.66
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.66
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.66
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.66
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.66
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.66
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.66
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.66
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.66
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.66
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.66
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.66
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.66
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.66
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.66
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.66
COG1123	539	ATPase components of various ABC-type transport sy	99.66
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.66
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.66
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.66
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.65
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.65
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.65
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.65
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.65
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.65
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.65
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.65
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.65
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.65
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.65
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.65
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.65
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.65
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.65
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.64
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.64
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.64
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.64
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.64
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.64
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.64
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.64
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.64
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.64
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.64
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.64
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.64
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.64
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.64
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.64
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.64
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.64
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.64
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.64
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.64
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.64
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.63
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.63
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.63
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.63
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.63
cd03246	173	ABCC_Protease_Secretion This family represents the	99.63
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.63
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.63
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.63
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.63
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.63
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.63
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.63
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.63
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.63
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.62
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.62
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.62
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.62
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.62
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.62
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.62
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.62
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.62
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.61
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.61
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.61
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.61
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.61
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.61
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.6
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.6
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.6
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.6
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.6
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.6
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.6
PRK11147	635	ABC transporter ATPase component; Reviewed	99.6
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.6
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.6
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.6
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.59
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.59
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.59
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.59
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.59
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.59
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.59
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.58
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.58
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.58
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.58
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.58
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.58
COG4559	259	ABC-type hemin transport system, ATPase component	99.57
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.57
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.57
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.57
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.56
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.56
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.56
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.56
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.56
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.56
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.56
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.56
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.56
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.56
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.55
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.55
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.55
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.55
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.54
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.54
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.54
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.54
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.54
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.54
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.54
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.54
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.53
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.53
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.53
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.52
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.52
COG4987	573	CydC ABC-type transport system involved in cytochr	99.52
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.52
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.52
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.52
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.51
PRK13409	590	putative ATPase RIL; Provisional	99.5
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.5
PRK10938	490	putative molybdenum transport ATP-binding protein	99.5
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.5
PRK10938	490	putative molybdenum transport ATP-binding protein	99.5
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.5
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.49
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.49
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.49
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.48
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.48
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.48
PRK11147	635	ABC transporter ATPase component; Reviewed	99.48
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.48
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.47
PTZ00243	1560	ABC transporter; Provisional	99.47
COG4988	559	CydD ABC-type transport system involved in cytochr	99.47
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.47
PLN03232	1495	ABC transporter C family member; Provisional	99.47
PLN03130	1622	ABC transporter C family member; Provisional	99.46
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.46
PLN03211	659	ABC transporter G-25; Provisional	99.46
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.46
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.46
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.46
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.44
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.44
COG0488	530	Uup ATPase components of ABC transporters with dup	99.44
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.42
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.42
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.42
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.42
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.42
PLN03073	718	ABC transporter F family; Provisional	99.42
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.41
COG4172	534	ABC-type uncharacterized transport system, duplica	99.41
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.4
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.39
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.39
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.39
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.37
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.37
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.36
PLN03130	1622	ABC transporter C family member; Provisional	99.35
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.35
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.35
PLN03232	1495	ABC transporter C family member; Provisional	99.35
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.34
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.32
COG0488	530	Uup ATPase components of ABC transporters with dup	99.32
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.31
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.31
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.3
PLN03140	1470	ABC transporter G family member; Provisional	99.29
PLN03073	718	ABC transporter F family; Provisional	99.29
PLN03140	1470	ABC transporter G family member; Provisional	99.28
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.28
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.26
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.22
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.22
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.21
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.2
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.17
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.17
PRK13409	590	putative ATPase RIL; Provisional	99.14
PTZ00243	1560	ABC transporter; Provisional	99.09
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.07
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.04
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.02
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.95
COG4178	604	ABC-type uncharacterized transport system, permeas	98.95
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	98.9
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	98.9
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.88
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	98.85
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.82
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.79
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.78
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	98.64
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	98.63
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.63
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.6
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	98.59
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	98.58
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	98.57
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.57
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.57
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	98.55
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.54
KOG0062	582	consensus ATPase component of ABC transporters wit	98.54
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.51
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.48
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	98.44
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.41
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.41
TIGR00767	415	rho transcription termination factor Rho. Members	98.38
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.37
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.36
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	98.33
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.33
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.32
PRK09825	176	idnK D-gluconate kinase; Provisional	98.32
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.31
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	98.3
PRK00300	205	gmk guanylate kinase; Provisional	98.29
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.28
PRK05480	209	uridine/cytidine kinase; Provisional	98.26
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	98.26
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.24
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.23
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.23
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	98.21
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.2
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	98.2
PRK08149	428	ATP synthase SpaL; Validated	98.19
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.15
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.14
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.14
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.13
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.12
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.12
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.1
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.09
PRK09862	506	putative ATP-dependent protease; Provisional	98.08
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.07
PRK09099	441	type III secretion system ATPase; Provisional	98.07
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.07
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	98.06
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.05
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.04
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	98.04
PLN02796	347	D-glycerate 3-kinase	98.02
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	98.01
PRK05922	434	type III secretion system ATPase; Validated	98.0
PRK06315	442	type III secretion system ATPase; Provisional	97.99
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	97.99
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	97.98
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	97.98
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	97.98
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	97.98
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	97.97
PTZ00301	210	uridine kinase; Provisional	97.96
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	97.96
PRK06936	439	type III secretion system ATPase; Provisional	97.95
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	97.94
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.92
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.88
PRK06820	440	type III secretion system ATPase; Validated	97.88
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	97.87
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.86
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.86
smart00382	148	AAA ATPases associated with a variety of cellular	97.86
PRK00889	175	adenylylsulfate kinase; Provisional	97.86
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	97.85
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.84
PRK01889	356	GTPase RsgA; Reviewed	97.83
PRK03846	198	adenylylsulfate kinase; Provisional	97.81
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.77
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.76
PRK10246	1047	exonuclease subunit SbcC; Provisional	97.76
PRK09183	259	transposase/IS protein; Provisional	97.76
PRK10416	318	signal recognition particle-docking protein FtsY;	97.75
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.75
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	97.74
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.73
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.73
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	97.73
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	97.73
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.71
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.7
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.7
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.69
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	97.69
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.69
PRK08233	182	hypothetical protein; Provisional	97.68
PRK07429	327	phosphoribulokinase; Provisional	97.68
PRK15494	339	era GTPase Era; Provisional	97.68
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.67
PRK05541	176	adenylylsulfate kinase; Provisional	97.67
PRK00098	298	GTPase RsgA; Reviewed	97.67
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	97.67
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.66
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.66
PRK07261	171	topology modulation protein; Provisional	97.65
PRK11545	163	gntK gluconate kinase 1; Provisional	97.65
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	97.65
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.64
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	97.63
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.63
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.63
PLN02318	656	phosphoribulokinase/uridine kinase	97.62
PLN03046	460	D-glycerate 3-kinase; Provisional	97.62
cd01128	249	rho_factor Transcription termination factor rho is	97.6
PRK04863	1486	mukB cell division protein MukB; Provisional	97.59
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	97.58
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.58
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.57
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	97.57
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	97.56
PRK05439	311	pantothenate kinase; Provisional	97.54

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.93  E-value=4.7e-26  Score=210.17  Aligned_cols=153  Identities=17%  Similarity=0.188  Sum_probs=120.5

Q ss_pred             CcccccccccccCCCCCcccchhhchhhhhcCCCchhhHHHHhcccCCccccCc-------CCCCCeEEEeeeEEEcCcc
Q 029679           18 STESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQ-------QREIPVVEARCMDEVYDAL   90 (189)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~yt~~L~~a~p~~~~~~~~-------~~~~~~l~~~~l~~~~~~~   90 (189)
                      .-.+++|++|++-|-++        ..++|.+|+||||+.|+++.|........       ....|+++++|++|.|...
T Consensus       222 aDrv~Vm~~G~iVE~G~--------~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~  293 (539)
T COG1123         222 ADRVVVMYKGEIVETGP--------TEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSR  293 (539)
T ss_pred             cCeEEEEECCEEEEecC--------HHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccc
Confidence            45678999999887664        57899999999999999998875432111       1156899999999999741


Q ss_pred             -------ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------CCCeEE
Q 029679           91 -------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----------PPDVAT  153 (189)
Q Consensus        91 -------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----------~~~~~~  153 (189)
                             .+.+.||+||||++++||++||||+||||||||+|+|+||++   |++|.+...+..          .++..+
T Consensus       294 ~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~~~~~~~~~~~~~r~~~Q  370 (539)
T COG1123         294 KGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQDLDLTGGELRRLRRRIQ  370 (539)
T ss_pred             cccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCcccccccchhhhhhhheE
Confidence                   134789999999999999999999999999999999999999   899986433211          123456


Q ss_pred             EEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          154 VLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       154 vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                      ++||+.+.-..+.+||.+++..++...+
T Consensus       371 mvFQdp~~SLnPr~tV~~~i~epL~~~~  398 (539)
T COG1123         371 MVFQDPYSSLNPRMTVGDILAEPLRIHG  398 (539)
T ss_pred             EEEeCcccccCccccHHHHHHhHHhhhc
Confidence            6777777655556999999999887543

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.91  E-value=3.5e-24  Score=191.73  Aligned_cols=149  Identities=17%  Similarity=0.147  Sum_probs=120.3

Q ss_pred             cccccccccCCCCCcccchhhchhhhhcCCCchhhHHHHhcccCCccccCcCCCCCeEEEeeeEEEcCc---c----cee
Q 029679           21 STPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDA---L----AQR   93 (189)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~yt~~L~~a~p~~~~~~~~~~~~~~l~~~~l~~~~~~---~----~~~   93 (189)
                      ..+|.+||+-|-+.        ..++|.+|+||||+.|++|.|...+++.+....++|+++++.++|..   .    ...
T Consensus       228 V~VM~~G~ivE~~~--------t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~  299 (534)
T COG4172         228 VYVMQHGEIVETGT--------TETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDH  299 (534)
T ss_pred             EEEEeccEEeecCc--------HHHHhhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchh
Confidence            46899999877665        46789999999999999999987666655567789999999999943   1    124


Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----------CCCeEEEEecCCCCC
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----------PPDVATVLPMDGFHL  162 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----------~~~~~~vv~~~~~~l  162 (189)
                      +.||++|||++++|+++||||+||||||||.++|.+|++   ++ |.|...+..           .++...++|||.|..
T Consensus       300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~---s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygS  375 (534)
T COG4172         300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP---SQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGS  375 (534)
T ss_pred             eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC---cC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCC
Confidence            779999999999999999999999999999999999995   44 776443321           234567889998877


Q ss_pred             CCCccChhhhHHHHHHHcC
Q 029679          163 YLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       163 ~~~~ltv~enl~~~~~~~g  181 (189)
                      ..+.++|.+-+..++....
T Consensus       376 LsPRmtV~qII~EGL~vh~  394 (534)
T COG4172         376 LSPRMTVGQIIEEGLRVHE  394 (534)
T ss_pred             CCcccCHHHHhhhhhhhcC
Confidence            6667999999998887654

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.89  E-value=3.4e-23  Score=183.54  Aligned_cols=98  Identities=16%  Similarity=0.253  Sum_probs=83.6

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------C
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------P  148 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~  148 (189)
                      ++.|+++|++|.|++    ..+|+||||+|++||+++|+||||||||||||+|+|+..   |++|.|..++..      .
T Consensus         3 ~~~l~i~~v~k~yg~----~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~   75 (352)
T COG3842           3 KPALEIRNVSKSFGD----FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE   75 (352)
T ss_pred             CceEEEEeeeeecCC----eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence            467999999999985    357889999999999999999999999999999999999   999997554422      2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                      ++..++|||+ |.+|++ |||.+|++|+++.++
T Consensus        76 kR~ig~VFQ~-YALFPH-ltV~~NVafGLk~~~  106 (352)
T COG3842          76 KRPIGMVFQS-YALFPH-MTVEENVAFGLKVRK  106 (352)
T ss_pred             hcccceeecC-cccCCC-CcHHHHhhhhhhhcC
Confidence            4456777755 999996 999999999998544

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.89  E-value=4.3e-23  Score=182.08  Aligned_cols=100  Identities=17%  Similarity=0.221  Sum_probs=84.0

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------C
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------P  148 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~  148 (189)
                      |..|+++|++|.|+..    .+|+++||+|+.||+++|+||||||||||||+|+||+.   +++|+|..++..      .
T Consensus         1 M~~i~l~~v~K~yg~~----~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~   73 (338)
T COG3839           1 MAELELKNVRKSFGSF----EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE   73 (338)
T ss_pred             CcEEEEeeeEEEcCCc----eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence            4579999999999873    16889999999999999999999999999999999999   999998554422      2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCC
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGE  183 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~  183 (189)
                      .+...++|| ++.+|++ |||++|++|+++.++.+
T Consensus        74 ~R~iamVFQ-~yALyPh-mtV~~Niaf~Lk~~~~~  106 (338)
T COG3839          74 KRGIAMVFQ-NYALYPH-MTVYENIAFGLKLRGVP  106 (338)
T ss_pred             HCCEEEEeC-CccccCC-CcHHHHhhhhhhhCCCc
Confidence            234555665 5999996 99999999999988754

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.87  E-value=3.2e-22  Score=169.27  Aligned_cols=97  Identities=18%  Similarity=0.213  Sum_probs=82.3

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC---CCCCeE
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV---KPPDVA  152 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~---~~~~~~  152 (189)
                      .+++++++++.|+.    ..+|+||||+|.+||+++|+|+||||||||+|+|+||..   |++|++...+.   .+....
T Consensus         2 ~~l~i~~v~~~f~~----~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~~   74 (248)
T COG1116           2 ALLEIEGVSKSFGG----VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPDI   74 (248)
T ss_pred             ceEEEEeeEEEeCc----eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCCE
Confidence            46899999999987    357889999999999999999999999999999999999   99999744332   234456


Q ss_pred             EEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       153 ~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                      +|++|+ +.+++ |+||++|+.+++...+
T Consensus        75 ~~vFQ~-~~LlP-W~Tv~~NV~l~l~~~~  101 (248)
T COG1116          75 GYVFQE-DALLP-WLTVLDNVALGLELRG  101 (248)
T ss_pred             EEEecc-Ccccc-hhhHHhhheehhhccc
Confidence            777765 77777 7999999999998765

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.86  E-value=3.2e-22  Score=166.75  Aligned_cols=94  Identities=19%  Similarity=0.241  Sum_probs=79.8

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ++|+++|++|+|+..    .+|+||||+|.+||+++|+||||||||||+|||.+|..   +++|.|...+..        
T Consensus         1 ~mi~i~~l~K~fg~~----~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~   73 (240)
T COG1126           1 MMIEIKNLSKSFGDK----EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDIL   73 (240)
T ss_pred             CeEEEEeeeEEeCCe----EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHH
Confidence            479999999999873    46789999999999999999999999999999999999   999998654421        


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                       .++..+++||+ |++|++ +||.+|+.++..
T Consensus        74 ~~R~~vGmVFQ~-fnLFPH-lTvleNv~lap~  103 (240)
T COG1126          74 KLRRKVGMVFQQ-FNLFPH-LTVLENVTLAPV  103 (240)
T ss_pred             HHHHhcCeeccc-cccccc-chHHHHHHhhhH
Confidence             13345677755 999996 999999999764

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.85  E-value=2.1e-21  Score=162.96  Aligned_cols=102  Identities=17%  Similarity=0.255  Sum_probs=84.5

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC--C-------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV--K-------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~--~-------  147 (189)
                      +++++||+|.|+.....+.+|++|||+|++||+++|+|||||||||||++|.||..   |++|.+...+.  .       
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~   77 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL   77 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence            47899999999764344678999999999999999999999999999999999999   99999643331  1       


Q ss_pred             ---CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCC
Q 029679          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGE  183 (189)
Q Consensus       148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~  183 (189)
                         +++..++++|+ |++.+. +|+.||+.+++...+..
T Consensus        78 ~~~R~~~iGfvFQ~-~nLl~~-ltv~ENv~lpl~~~~~~  114 (226)
T COG1136          78 AKLRRKKIGFVFQN-FNLLPD-LTVLENVELPLLIAGKS  114 (226)
T ss_pred             HHHHHHhEEEECcc-CCCCCC-CCHHHHHHhHHHHcCCC
Confidence               34567888865 999885 99999999988766554

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.84  E-value=4.8e-21  Score=166.55  Aligned_cols=102  Identities=19%  Similarity=0.202  Sum_probs=86.1

Q ss_pred             eEEEeeeEEEcCcc-ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~-~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ||++++|+|.|... ...+.+|+||||+|++|||+||||.||+|||||+|+|.+|..   |++|+++..+.+        
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~   77 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE   77 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence            58999999999762 234779999999999999999999999999999999999999   999997654421        


Q ss_pred             ---CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCC
Q 029679          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGE  183 (189)
Q Consensus       148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~  183 (189)
                         .++.++++|| .|+++.. .||++|++|++...+.+
T Consensus        78 Lr~~R~~IGMIFQ-hFnLLss-rTV~~NvA~PLeiag~~  114 (339)
T COG1135          78 LRQLRQKIGMIFQ-HFNLLSS-RTVFENVAFPLELAGVP  114 (339)
T ss_pred             HHHHHhhccEEec-ccccccc-chHHhhhhhhHhhcCCC
Confidence               2445677775 4998875 89999999999988864

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.83  E-value=6e-21  Score=156.61  Aligned_cols=100  Identities=19%  Similarity=0.178  Sum_probs=85.3

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------  147 (189)
                      ||+++||+|.|+.+   ..||+||||+|++||++-|+|+||||||||+|+|.+...   |+.|.++.++.+         
T Consensus         1 mI~f~~V~k~Y~~g---~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i   74 (223)
T COG2884           1 MIRFENVSKAYPGG---REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI   74 (223)
T ss_pred             CeeehhhhhhcCCC---chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence            58999999999875   258899999999999999999999999999999999999   999997554321         


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCCC
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV  184 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~~  184 (189)
                        .++.+++++|| |.+.+. +||+||+++++...|.+.
T Consensus        75 P~LRR~IGvVFQD-~rLL~~-~tvyeNVA~pL~v~G~~~  111 (223)
T COG2884          75 PFLRRQIGVVFQD-FRLLPD-RTVYENVALPLRVIGKPP  111 (223)
T ss_pred             chhhheeeeEeee-cccccc-chHhhhhhhhhhccCCCH
Confidence              24567888876 777774 999999999998887654

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.82  E-value=3.4e-20  Score=156.59  Aligned_cols=104  Identities=16%  Similarity=0.159  Sum_probs=84.4

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCC-CC------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VK------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~-~~------  147 (189)
                      +++|+++|+++.|+......++|++|||+|.+||++||+|+||||||||+|+|+||.+   |+.|+|...+ ..      
T Consensus         1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~   77 (252)
T COG1124           1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA   77 (252)
T ss_pred             CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence            3589999999999875333468899999999999999999999999999999999999   9999975443 21      


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                        ..+..++||||.+.-..+.++|.+-+..+++..+
T Consensus        78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~  113 (252)
T COG1124          78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG  113 (252)
T ss_pred             hhhccceeEEecCCccccCcchhHHHHHhhhhccCC
Confidence              2345677888877666666889988888776533

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.80  E-value=3.9e-20  Score=157.69  Aligned_cols=98  Identities=16%  Similarity=0.202  Sum_probs=81.9

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      ||+++||+|.|++.    .+|+|+||+|.+||++.++|+|||||||++|||.+|+.   |++|.|...+..        .
T Consensus         1 MI~~~nvsk~y~~~----~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L   73 (309)
T COG1125           1 MIEFENVSKRYGNK----KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL   73 (309)
T ss_pred             CceeeeeehhcCCc----eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence            58999999999863    47889999999999999999999999999999999999   999998554432        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCC
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGE  183 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~  183 (189)
                      ++.++|+-|+ ..+|++ +||.+|+++...+.+++
T Consensus        74 Rr~IGYviQq-igLFPh-~Tv~eNIa~VP~L~~w~  106 (309)
T COG1125          74 RRKIGYVIQQ-IGLFPH-LTVAENIATVPKLLGWD  106 (309)
T ss_pred             HHhhhhhhhh-cccCCC-ccHHHHHHhhhhhcCCC
Confidence            3445666544 788885 99999999988776654

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.80  E-value=9.4e-20  Score=153.55  Aligned_cols=94  Identities=20%  Similarity=0.295  Sum_probs=78.8

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      .+|+++||++.|++.   ..+|+||||+|++||+++|||+||||||||+|+|.|+..   ++.|+++.++..        
T Consensus         2 ~~i~~~nl~k~yp~~---~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k~   75 (258)
T COG3638           2 MMIEVKNLSKTYPGG---HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGKE   75 (258)
T ss_pred             ceEEEeeeeeecCCC---ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchHH
Confidence            579999999999653   257889999999999999999999999999999999998   999998655432        


Q ss_pred             ---CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                         .++..++++|+ |++.+. ++|++|+..+.
T Consensus        76 lr~~r~~iGmIfQ~-~nLv~r-~sv~~NVl~gr  106 (258)
T COG3638          76 LRKLRRDIGMIFQQ-FNLVPR-LSVLENVLLGR  106 (258)
T ss_pred             HHHHHHhceeEecc-CCcccc-cHHHHHHHhhh
Confidence               13456777765 888885 99999998875

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.80  E-value=6.7e-20  Score=159.36  Aligned_cols=95  Identities=16%  Similarity=0.211  Sum_probs=81.5

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC---C------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV---K------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~---~------  147 (189)
                      +|+++++++.|+..    .+++||||+|+.||.+||.||||||||||+|+|+||+.   |+.|.|..++.   +      
T Consensus         2 ~i~i~~~~~~~~~~----~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~   74 (345)
T COG1118           2 SIRINNVKKRFGAF----GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV   74 (345)
T ss_pred             ceeehhhhhhcccc----cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence            58999999999874    46779999999999999999999999999999999999   99999865544   1      


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~  180 (189)
                      +.+.+++++|+ +.+|++ |||.+|++|+++.+
T Consensus        75 ~~R~VGfvFQ~-YALF~H-mtVa~NIAFGl~~~  105 (345)
T COG1118          75 RDRKVGFVFQH-YALFPH-MTVADNIAFGLKVR  105 (345)
T ss_pred             hhcceeEEEec-hhhccc-chHHhhhhhccccc
Confidence            23457788865 888885 99999999999765

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.79  E-value=2.2e-19  Score=151.66  Aligned_cols=97  Identities=20%  Similarity=0.241  Sum_probs=79.6

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      .++|++++|++.|++  +.  .++||||+|++||+++|+|+||||||||+|+|.||++   |++|+++..+..       
T Consensus         6 ~~~I~vr~v~~~fG~--~~--Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~   78 (263)
T COG1127           6 EPLIEVRGVTKSFGD--RV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE   78 (263)
T ss_pred             cceEEEeeeeeecCC--EE--EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence            578999999999987  33  4569999999999999999999999999999999999   999997554432       


Q ss_pred             ----CCCeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (189)
Q Consensus       148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~  180 (189)
                          .++..+++||+ -.+|. .+||+||++|+++..
T Consensus        79 ~~~~ir~r~GvlFQ~-gALFs-sltV~eNVafplre~  113 (263)
T COG1127          79 ELYEIRKRMGVLFQQ-GALFS-SLTVFENVAFPLREH  113 (263)
T ss_pred             HHHHHHhheeEEeec-ccccc-ccchhHhhheehHhh
Confidence                12345777766 55665 499999999987543

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=6.1e-19  Score=156.51  Aligned_cols=98  Identities=16%  Similarity=0.203  Sum_probs=80.3

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------C
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------P  148 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~  148 (189)
                      +++|+++|+++.|++  .  .+|+|+||++++||+++|+|+||||||||+|+|+|+++   +++|++...+..      .
T Consensus         4 ~~~l~~~~l~~~~~~--~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~~   76 (351)
T PRK11432          4 KNFVVLKNITKRFGS--N--TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSIQ   76 (351)
T ss_pred             CcEEEEEeEEEEECC--e--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence            568999999999975  2  36789999999999999999999999999999999998   999997543321      1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                      ++..++++|+ +.++++ +|+++|+.++++.++
T Consensus        77 ~r~ig~vfQ~-~~lfp~-~tv~eNi~~~l~~~~  107 (351)
T PRK11432         77 QRDICMVFQS-YALFPH-MSLGENVGYGLKMLG  107 (351)
T ss_pred             HCCEEEEeCC-cccCCC-CCHHHHHHHHHhHcC
Confidence            2456777765 777775 999999999876543

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.78  E-value=1.4e-18  Score=164.01  Aligned_cols=150  Identities=14%  Similarity=0.128  Sum_probs=106.6

Q ss_pred             CcccccccccccCCCCCcccchhhchhhhhcCCCchhhHHHHhcccCCcc------c----------c----C------c
Q 029679           18 STESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKV------L----------C----S------Q   71 (189)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~yt~~L~~a~p~~~~------~----------~----~------~   71 (189)
                      ...+.+|++|++-+.+.        ..+++.+|.|+|++.++.+.|....      +          +    +      .
T Consensus       236 adri~vl~~G~i~~~g~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (623)
T PRK10261        236 ADRVLVMYQGEAVETGS--------VEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRFPLISLEHPAKQEPPIEQDTV  307 (623)
T ss_pred             CCEEEEeeCCeecccCC--------HHHhhcCCCChhhhhhhhccCcccccccccCCccccccccccccccCcccccccc
Confidence            36788899988765332        3456788999999998876443200      0          0    0      0


Q ss_pred             CCCCCeEEEeeeEEEcCccc-------eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679           72 QREIPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS  144 (189)
Q Consensus        72 ~~~~~~l~~~~l~~~~~~~~-------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~  144 (189)
                      ....++|+++|+++.|+...       ....+|+||||+|++||+++|+|+||||||||+|+|+|+++   |++|++...
T Consensus       308 ~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~  384 (623)
T PRK10261        308 VDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFN  384 (623)
T ss_pred             cCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEEC
Confidence            01236899999999996210       11346889999999999999999999999999999999998   899997543


Q ss_pred             CCC-----------CCCeEEEEecCCC-CCCCCccChhhhHHHHHHH
Q 029679          145 QVK-----------PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       145 ~~~-----------~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~~  179 (189)
                      +..           .++..++++|+.+ .+++ .+++.+|+.+.+..
T Consensus       385 g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~-~~tv~~~l~~~~~~  430 (623)
T PRK10261        385 GQRIDTLSPGKLQALRRDIQFIFQDPYASLDP-RQTVGDSIMEPLRV  430 (623)
T ss_pred             CEECCcCCHHHHHHhcCCeEEEecCchhhcCC-CCCHHHHHHHHHHH
Confidence            311           1234678887753 3444 48999999876543

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.78  E-value=7e-19  Score=156.18  Aligned_cols=98  Identities=16%  Similarity=0.260  Sum_probs=80.2

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------C
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------P  148 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~  148 (189)
                      +++|+++|+++.|++.    .+|+|+||++.+||+++|+|+||||||||+|+|+|+++   |++|++...+..      .
T Consensus         2 ~~~l~~~~l~~~~~~~----~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~   74 (353)
T TIGR03265         2 SPYLSIDNIRKRFGAF----TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ   74 (353)
T ss_pred             CcEEEEEEEEEEeCCe----EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence            4579999999999762    35789999999999999999999999999999999998   999997543321      1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                      ++..+|++|+ +.+|++ +++.+|+.++++.++
T Consensus        75 ~r~ig~v~Q~-~~lfp~-~tv~eNi~~~~~~~~  105 (353)
T TIGR03265        75 KRDYGIVFQS-YALFPN-LTVADNIAYGLKNRG  105 (353)
T ss_pred             HCCEEEEeCC-cccCCC-CcHHHHHHHHHHhcC
Confidence            3446777765 778875 999999999876543

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.78  E-value=7.3e-19  Score=156.22  Aligned_cols=97  Identities=18%  Similarity=0.206  Sum_probs=79.0

Q ss_pred             CeEEEeeeEEEc-CccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------C
Q 029679           76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------P  148 (189)
Q Consensus        76 ~~l~~~~l~~~~-~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~  148 (189)
                      .+|+++|+++.| +.  +  .+|+|+||++.+||+++|+|+||||||||+|+|+|+++   +++|++...+..      .
T Consensus         2 ~~l~i~~l~~~~~~~--~--~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~   74 (356)
T PRK11650          2 AGLKLQAVRKSYDGK--T--QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEPA   74 (356)
T ss_pred             CEEEEEeEEEEeCCC--C--EEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence            479999999999 54  2  36789999999999999999999999999999999998   999997544321      1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                      .+..+|++|+ +.++++ +++.+|+.++++..+
T Consensus        75 ~r~ig~v~Q~-~~lfp~-~tv~eNi~~~~~~~~  105 (356)
T PRK11650         75 DRDIAMVFQN-YALYPH-MSVRENMAYGLKIRG  105 (356)
T ss_pred             HCCEEEEeCC-ccccCC-CCHHHHHHhHHhhcC
Confidence            2456777865 677774 999999999876443

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.78  E-value=1e-18  Score=154.72  Aligned_cols=100  Identities=18%  Similarity=0.201  Sum_probs=79.0

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------  147 (189)
                      ||+++|+++.|+.......+|+||||+|++||+++|+|+||||||||+|+|+|+++   |++|++...+..         
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l   77 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL   77 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence            58999999999632122357889999999999999999999999999999999998   999997543321         


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                        .++..++++|+ +.+++. +|+.+|+.+++...+
T Consensus        78 ~~~r~~Ig~v~Q~-~~l~~~-~tv~eni~~~~~~~~  111 (343)
T TIGR02314        78 TKARRQIGMIFQH-FNLLSS-RTVFGNVALPLELDN  111 (343)
T ss_pred             HHHhcCEEEEECC-cccccc-CcHHHHHHHHHHHcC
Confidence              13356778865 667664 899999999876544

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.78  E-value=1.1e-18  Score=151.32  Aligned_cols=100  Identities=23%  Similarity=0.270  Sum_probs=81.7

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------C
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------P  148 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~  148 (189)
                      .+++++|++|.|+..   ..+|+||||+|++|+++||+|+||||||||+|+|+|++.   |++|++...+..       .
T Consensus         3 ~~i~~~~l~k~~~~~---~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~~~   76 (293)
T COG1131           3 EVIEVRNLTKKYGGD---KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPAKV   76 (293)
T ss_pred             ceeeecceEEEeCCC---CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHHHH
Confidence            468999999999831   257889999999999999999999999999999999999   999997544322       1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCC
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGE  183 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~  183 (189)
                      ++..+|++++ ..+++ .+|+.||+.+....++.+
T Consensus        77 ~~~igy~~~~-~~~~~-~lT~~e~l~~~~~l~~~~  109 (293)
T COG1131          77 RRRIGYVPQE-PSLYP-ELTVRENLEFFARLYGLS  109 (293)
T ss_pred             HhheEEEccC-CCCCc-cccHHHHHHHHHHHhCCC
Confidence            3456888866 44555 599999999998887754

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.77  E-value=6.3e-19  Score=147.90  Aligned_cols=96  Identities=21%  Similarity=0.304  Sum_probs=79.6

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ++|+++|++..|+.    ..+|++|||++++||+++|+|+||+|||||+|+|+|+.+   +.+|+|...+.+        
T Consensus         2 ~mL~v~~l~~~YG~----~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~~~   74 (237)
T COG0410           2 PMLEVENLSAGYGK----IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPHE   74 (237)
T ss_pred             CceeEEeEeecccc----eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCHHH
Confidence            68999999999987    367889999999999999999999999999999999998   889997544432        


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~  180 (189)
                       .+.-..++| ++...|+. |||.||+..+....
T Consensus        75 r~r~Gi~~VP-egR~iF~~-LTVeENL~~g~~~~  106 (237)
T COG0410          75 RARLGIAYVP-EGRRIFPR-LTVEENLLLGAYAR  106 (237)
T ss_pred             HHhCCeEeCc-ccccchhh-CcHHHHHhhhhhcc
Confidence             122346677 46888885 99999999876443

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.77  E-value=1.1e-18  Score=156.12  Aligned_cols=99  Identities=18%  Similarity=0.240  Sum_probs=80.5

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------  147 (189)
                      .+++|+++|+++.|+..    .+|+++||++.+||+++|+|+||||||||+|+|+|+++   +++|++...+..      
T Consensus        11 ~~~~L~l~~l~~~~~~~----~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~   83 (375)
T PRK09452         11 LSPLVELRGISKSFDGK----EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVPA   83 (375)
T ss_pred             CCceEEEEEEEEEECCe----EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence            45689999999999752    35779999999999999999999999999999999998   999997543321      


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                      .++..+|++|+ +.++++ +++.+|+.++++..+
T Consensus        84 ~~r~ig~vfQ~-~~lfp~-ltv~eNi~~~l~~~~  115 (375)
T PRK09452         84 ENRHVNTVFQS-YALFPH-MTVFENVAFGLRMQK  115 (375)
T ss_pred             HHCCEEEEecC-cccCCC-CCHHHHHHHHHhhcC
Confidence            12446777765 777875 999999999876443

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.77  E-value=1e-18  Score=144.61  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=84.9

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---CCCe
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDV  151 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---~~~~  151 (189)
                      |+++.+++++..|++.  ...+++|||++|..||.+.++||||||||||+++++|+..   |+.|++..++..   +...
T Consensus         1 M~~l~~~~~sl~y~g~--~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae   75 (259)
T COG4525           1 MCMLNVSHLSLSYEGK--PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE   75 (259)
T ss_pred             CceeehhheEEecCCc--chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence            4678999999999873  3457889999999999999999999999999999999999   999998554431   2234


Q ss_pred             EEEEecCCCCCCCCccChhhhHHHHHHHcCCCC
Q 029679          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV  184 (189)
Q Consensus       152 ~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~~  184 (189)
                      .++++|+ ..+++ |+++.+|++|+++.+|++.
T Consensus        76 rgvVFQ~-~~LlP-Wl~~~dNvafgL~l~Gi~k  106 (259)
T COG4525          76 RGVVFQN-EALLP-WLNVIDNVAFGLQLRGIEK  106 (259)
T ss_pred             ceeEecc-Cccch-hhHHHHHHHHHHHhcCCCH
Confidence            5677765 55555 7999999999999998764

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.76  E-value=2.5e-18  Score=153.97  Aligned_cols=99  Identities=16%  Similarity=0.221  Sum_probs=80.8

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------  147 (189)
                      ..++|+++|+++.|++.    .+|+++||+|++||+++|+|+||||||||+|+|+|+++   +++|++...+..      
T Consensus        16 ~~~~l~l~~v~~~~~~~----~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~   88 (377)
T PRK11607         16 LTPLLEIRNLTKSFDGQ----HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPP   88 (377)
T ss_pred             CCceEEEEeEEEEECCE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence            35689999999999752    36789999999999999999999999999999999998   999987543321      


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                      .++..+|++|+ +.+|++ +++.+|+.++++..+
T Consensus        89 ~~r~ig~vfQ~-~~lfp~-ltv~eNi~~~l~~~~  120 (377)
T PRK11607         89 YQRPINMMFQS-YALFPH-MTVEQNIAFGLKQDK  120 (377)
T ss_pred             HHCCEEEEeCC-CccCCC-CCHHHHHHHHHHHcC
Confidence            23456777865 677874 999999999876543

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.76  E-value=4.7e-18  Score=147.90  Aligned_cols=98  Identities=21%  Similarity=0.215  Sum_probs=78.7

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      .++|+++|++|.|++    ..+|+||||+|++||++||+|+||||||||+|+|+|+++   |++|++...+..       
T Consensus         5 ~~~i~i~~l~k~~~~----~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~   77 (306)
T PRK13537          5 VAPIDFRNVEKRYGD----KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARH   77 (306)
T ss_pred             CceEEEEeEEEEECC----eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHH
Confidence            358999999999975    247889999999999999999999999999999999998   999987544322       


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                      .++..+|++|+ ..+++ .+|+.+|+.+....++
T Consensus        78 ~~~~ig~v~q~-~~~~~-~~tv~e~l~~~~~~~~  109 (306)
T PRK13537         78 ARQRVGVVPQF-DNLDP-DFTVRENLLVFGRYFG  109 (306)
T ss_pred             HHhcEEEEecc-CcCCC-CCcHHHHHHHHHHHcC
Confidence            13456788866 45554 4899999987655544

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.76  E-value=4.6e-19  Score=149.69  Aligned_cols=96  Identities=23%  Similarity=0.350  Sum_probs=77.0

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----C-C
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----P-P  149 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----~-~  149 (189)
                      .+++++++++|+|++    +.||+||||++++||+++||||||||||||+++|+|+++   |++|++...+..    + .
T Consensus         2 ~~lL~v~~l~k~FGG----l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~   74 (250)
T COG0411           2 TPLLEVRGLSKRFGG----LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPH   74 (250)
T ss_pred             CceeeeccceeecCC----EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHH
Confidence            367999999999998    468999999999999999999999999999999999999   999997554432    1 1


Q ss_pred             C--eEEEE-ecCCCCCCCCccChhhhHHHHHH
Q 029679          150 D--VATVL-PMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       150 ~--~~~vv-~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      .  ..++. -+|...+|+. |||.||+..+..
T Consensus        75 ~iar~Gi~RTFQ~~rlF~~-lTVlENv~va~~  105 (250)
T COG0411          75 RIARLGIARTFQITRLFPG-LTVLENVAVGAH  105 (250)
T ss_pred             HHHhccceeecccccccCC-CcHHHHHHHHhh
Confidence            1  11222 2344677875 999999999864

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.74  E-value=3.5e-18  Score=142.60  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=79.4

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCC--C---
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQV--K---  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~--~---  147 (189)
                      .+.++++|++++|+..    .+|+|||++|++++++||+||||||||||+|++..+...+  ..-+|.+...+.  .   
T Consensus         5 ~~~~~~~~l~~yYg~~----~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~   80 (253)
T COG1117           5 IPAIEVRDLNLYYGDK----HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK   80 (253)
T ss_pred             cceeEecceeEEECch----hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence            4579999999999863    5788999999999999999999999999999999998621  122355432221  1   


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCCC
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV  184 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~~  184 (189)
                           .++..++++|. .++|+  +++++|++++.++.|...
T Consensus        81 ~d~~~lRr~vGMVFQk-PnPFp--~SIydNVayG~r~~g~~~  119 (253)
T COG1117          81 VDVVELRRRVGMVFQK-PNPFP--MSIYDNVAYGLRLHGIKD  119 (253)
T ss_pred             CCHHHHHHHheeeccC-CCCCC--chHHHHHHHhHHhhccch
Confidence                 13445666654 78887  899999999999887653

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.74  E-value=8.3e-18  Score=150.01  Aligned_cols=96  Identities=18%  Similarity=0.233  Sum_probs=77.3

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CC
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PP  149 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~  149 (189)
                      ..|+++|+++.|++  +  .+++|+||+|++||+++|+|+||||||||+|+|+|+++   |++|++...+..      ..
T Consensus         2 ~~l~i~~l~~~~~~--~--~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~~   74 (369)
T PRK11000          2 ASVTLRNVTKAYGD--V--VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPAE   74 (369)
T ss_pred             CEEEEEEEEEEeCC--e--EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHhH
Confidence            46999999999975  2  35789999999999999999999999999999999998   999997543311      12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~  180 (189)
                      +..+|++|+ +.+++. +++.+|+.+.+...
T Consensus        75 ~~i~~v~Q~-~~l~~~-~tv~eni~~~~~~~  103 (369)
T PRK11000         75 RGVGMVFQS-YALYPH-LSVAENMSFGLKLA  103 (369)
T ss_pred             CCEEEEeCC-cccCCC-CCHHHHHHhHHhhc
Confidence            346777865 566664 89999999876543

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.74  E-value=3.9e-18  Score=145.78  Aligned_cols=93  Identities=18%  Similarity=0.215  Sum_probs=75.0

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      +|+++|+++.|++  +  ..++|+||++++|++++|+||||||||||+|+|+|+++   |.+|.+...+..        .
T Consensus         2 ~L~~~~ls~~y~~--~--~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel   74 (258)
T COG1120           2 MLEVENLSFGYGG--K--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL   74 (258)
T ss_pred             eeEEEEEEEEECC--e--eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence            6899999999986  3  35679999999999999999999999999999999999   999997554432        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      .+...|+||.....+  .++|+|-+.++..
T Consensus        75 Ak~ia~vpQ~~~~~~--~~tV~d~V~~GR~  102 (258)
T COG1120          75 AKKLAYVPQSPSAPF--GLTVYELVLLGRY  102 (258)
T ss_pred             hhhEEEeccCCCCCC--CcEEeehHhhcCC
Confidence            345678887743333  4889988877653

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.74  E-value=6.5e-18  Score=150.58  Aligned_cols=96  Identities=14%  Similarity=0.185  Sum_probs=78.2

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCc--eeeccCCCC------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--ASSFDSQVK------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~--G~i~~~~~~------~  148 (189)
                      .|+++|+++.|+.  .  .+|+|+||+|.+||+++|+|+||||||||+|+|+|+++   |++  |++...+..      .
T Consensus         5 ~l~~~~l~~~~~~--~--~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~   77 (362)
T TIGR03258         5 GIRIDHLRVAYGA--N--TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH   77 (362)
T ss_pred             EEEEEEEEEEECC--e--EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence            3899999999975  2  36789999999999999999999999999999999998   888  997443321      1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                      .+..++++|+ +.++++ +|+++|+.++++..+
T Consensus        78 ~r~ig~vfQ~-~~l~p~-~tv~enl~~~l~~~~  108 (362)
T TIGR03258        78 KRGLALLFQN-YALFPH-LKVEDNVAFGLRAQK  108 (362)
T ss_pred             HCCEEEEECC-cccCCC-CcHHHHHHHHHHHcC
Confidence            2446777765 677774 999999999876544

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.74  E-value=7.1e-18  Score=138.54  Aligned_cols=96  Identities=16%  Similarity=0.114  Sum_probs=74.1

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------  147 (189)
                      ||+++|+++.|++..+  .+++++||++.+||+++|+|+||||||||+|+|+|+++   +++|++...+..         
T Consensus         1 ~l~~~~l~~~~~~~~~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   75 (216)
T TIGR00960         1 MIRFEQVSKAYPGGHQ--PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGREI   75 (216)
T ss_pred             CeEEEEEEEEecCCCe--eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChhHH
Confidence            4899999999964211  35779999999999999999999999999999999998   899987443321         


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                        .++..++++|+ ..++. .+++.+|+.+....
T Consensus        76 ~~~~~~i~~~~q~-~~~~~-~~tv~e~l~~~~~~  107 (216)
T TIGR00960        76 PFLRRHIGMVFQD-HRLLS-DRTVYDNVAFPLRI  107 (216)
T ss_pred             HHHHHhceEEecC-ccccc-cccHHHHHHHHHHh
Confidence              11345677766 44554 38999999886543

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.74  E-value=1.5e-17  Score=138.42  Aligned_cols=98  Identities=13%  Similarity=0.117  Sum_probs=75.4

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----C---
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----P---  148 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----~---  148 (189)
                      ++|+++|+++.|+.......+++++||+|++||+++|+|+||||||||+++|+|+++   +++|++...+..    .   
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~   80 (233)
T PRK11629          4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA   80 (233)
T ss_pred             ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence            579999999999642111236789999999999999999999999999999999998   899997544321    0   


Q ss_pred             -----CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       149 -----~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                           ++..++++|+ ..+++ .+++.+|+.+...
T Consensus        81 ~~~~~~~~i~~v~q~-~~~~~-~~tv~e~l~~~~~  113 (233)
T PRK11629         81 KAELRNQKLGFIYQF-HHLLP-DFTALENVAMPLL  113 (233)
T ss_pred             HHHHHhccEEEEecC-cccCC-CCCHHHHHHHHHH
Confidence                 1345777766 44554 3799999987643

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.74  E-value=9.9e-18  Score=148.17  Aligned_cols=99  Identities=22%  Similarity=0.222  Sum_probs=78.2

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------  147 (189)
                      .+++|+++|++|.|++.    .+|+||||+|.+|+++||+|+||||||||+|+|+|+++   |++|++...+..      
T Consensus        38 ~~~~i~i~nl~k~y~~~----~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~  110 (340)
T PRK13536         38 STVAIDLAGVSKSYGDK----AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARAR  110 (340)
T ss_pred             CceeEEEEEEEEEECCE----EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchH
Confidence            45689999999999762    46889999999999999999999999999999999998   999997543321      


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                       .+...++++|+ ..++. .+++.+|+.+....++
T Consensus       111 ~~~~~ig~v~q~-~~~~~-~~tv~e~l~~~~~~~~  143 (340)
T PRK13536        111 LARARIGVVPQF-DNLDL-EFTVRENLLVFGRYFG  143 (340)
T ss_pred             HHhccEEEEeCC-ccCCC-CCcHHHHHHHHHHHcC
Confidence             13456778865 45554 4899999987544433

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.74  E-value=1e-17  Score=142.85  Aligned_cols=95  Identities=18%  Similarity=0.226  Sum_probs=76.5

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC-----CCC
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV-----KPP  149 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~-----~~~  149 (189)
                      +++|+++|+++.|+..    .+|+||||+|.+|++++|+||||||||||+|+|+||++   |.+|++...+.     ..+
T Consensus         2 ~~~i~v~nl~v~y~~~----~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~   74 (254)
T COG1121           2 MPMIEVENLTVSYGNR----PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKR   74 (254)
T ss_pred             CcEEEEeeeEEEECCE----eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccC
Confidence            4689999999999862    36889999999999999999999999999999999998   99999754332     123


Q ss_pred             CeEEEEecCC-CCCCCCccChhhhHHHHH
Q 029679          150 DVATVLPMDG-FHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       150 ~~~~vv~~~~-~~l~~~~ltv~enl~~~~  177 (189)
                      ..++|+||.. ++...+ .||+|-+.++.
T Consensus        75 ~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~  102 (254)
T COG1121          75 LRIGYVPQKSSVDRSFP-ITVKDVVLLGR  102 (254)
T ss_pred             CeEEEcCcccccCCCCC-cCHHHHHHccC
Confidence            5688999864 333333 79998877763

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.74  E-value=1.8e-17  Score=137.17  Aligned_cols=98  Identities=18%  Similarity=0.144  Sum_probs=74.8

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P----  148 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~----  148 (189)
                      +++|+++|+++.|+.......+++++||++.+||+++|+|+||||||||+++|+|+++   |++|.+...+..  .    
T Consensus         4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~   80 (228)
T PRK10584          4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEE   80 (228)
T ss_pred             CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHH
Confidence            3589999999999752111235779999999999999999999999999999999998   899987533311  0    


Q ss_pred             ------CCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       149 ------~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                            ....++++|+ ..++. .+++.+|+.+..
T Consensus        81 ~~~~~~~~~i~~~~q~-~~l~~-~~tv~~~l~~~~  113 (228)
T PRK10584         81 ARAKLRAKHVGFVFQS-FMLIP-TLNALENVELPA  113 (228)
T ss_pred             HHHHHHhheEEEEEcc-cccCC-CcCHHHHHHHHH
Confidence                  1346677765 45555 379999998754

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.74  E-value=2.5e-18  Score=142.51  Aligned_cols=99  Identities=23%  Similarity=0.255  Sum_probs=80.5

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PP  149 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~  149 (189)
                      ||++.+++|+|+.   .+.+++||||++++||++||.|+||+||||++|+|++|+.   |++|.+...+.+       .+
T Consensus         1 Ml~v~~l~K~y~~---~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr   74 (245)
T COG4555           1 MLEVTDLTKSYGS---KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR   74 (245)
T ss_pred             CeeeeehhhhccC---HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence            6899999999987   3468999999999999999999999999999999999998   999997544322       23


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHHHHHHcCCC
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGE  183 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~  183 (189)
                      +.+++++ ....++. .||+.||+.+..++.++.
T Consensus        75 r~IGVl~-~e~glY~-RlT~rEnl~~Fa~L~~l~  106 (245)
T COG4555          75 RKIGVLF-GERGLYA-RLTARENLKYFARLNGLS  106 (245)
T ss_pred             hhcceec-CCcChhh-hhhHHHHHHHHHHHhhhh
Confidence            4456666 3344554 599999999988777654

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.73  E-value=1.3e-17  Score=147.34  Aligned_cols=100  Identities=16%  Similarity=0.234  Sum_probs=76.7

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------  147 (189)
                      ||+++|+++.|+.......+++|+||+|++||+++|+|+||||||||+|+|+|+++   |++|++...+..         
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~~~   77 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL   77 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHH
Confidence            58999999999731111246789999999999999999999999999999999998   899997443311         


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                        .++..++++|+ ..++. .+++.+|+.+.....+
T Consensus        78 ~~~~~~ig~v~q~-~~l~~-~~tv~eni~~~~~~~~  111 (343)
T PRK11153         78 RKARRQIGMIFQH-FNLLS-SRTVFDNVALPLELAG  111 (343)
T ss_pred             HHHhcCEEEEeCC-CccCC-CCcHHHHHHHHHHHcC
Confidence              02346777865 45555 3899999998765443

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.73  E-value=1.3e-17  Score=146.94  Aligned_cols=102  Identities=15%  Similarity=0.145  Sum_probs=78.8

Q ss_pred             CCCeEEEeeeEEEcCccc---------eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679           74 EIPVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS  144 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~  144 (189)
                      ..++|+++||++.|+...         ..+.+|+||||+|.+||+++|+|+||||||||+++|+|++.   +++|++...
T Consensus         5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~   81 (331)
T PRK15079          5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWL   81 (331)
T ss_pred             CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEEC
Confidence            457899999999996311         12457899999999999999999999999999999999998   889987443


Q ss_pred             CCC-----------CCCeEEEEecCCC-CCCCCccChhhhHHHHHHH
Q 029679          145 QVK-----------PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       145 ~~~-----------~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~~  179 (189)
                      +..           .++..+|++|+.. .+++ .+++.+|+.+.+..
T Consensus        82 G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p-~~tv~~~i~~~l~~  127 (331)
T PRK15079         82 GKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP-RMTIGEIIAEPLRT  127 (331)
T ss_pred             CEECCcCCHHHHHHHhCceEEEecCchhhcCC-CCCHHHHHHHHHHH
Confidence            321           1234678888754 3444 48999999886543

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.73  E-value=1.3e-17  Score=137.47  Aligned_cols=99  Identities=16%  Similarity=0.212  Sum_probs=73.6

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------  147 (189)
                      +|+++|+++.|+.......+++|+||++++||+++|+|+||||||||+++|+|+++   |++|++...+..         
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRRLR   77 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchhhH
Confidence            47899999999652111135779999999999999999999999999999999998   899987443311         


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                        .++..+|++|+....+...+++.+|+.+...
T Consensus        78 ~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~  110 (228)
T cd03257          78 KIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLR  110 (228)
T ss_pred             HHhhccEEEEecCchhhcCCcCCHHHHHHHHHH
Confidence              1234667777643223334899999987644

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.73  E-value=1.7e-17  Score=136.23  Aligned_cols=98  Identities=17%  Similarity=0.241  Sum_probs=74.8

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PP  149 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~  149 (189)
                      +|+++|+++.|+...+...+++++||++++||+++|+|+||||||||+++|+|+++   |++|++...+..       .+
T Consensus         1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   77 (218)
T cd03266           1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEAR   77 (218)
T ss_pred             CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHH
Confidence            47899999999753111135779999999999999999999999999999999998   899987443311       12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      +..++++|+ ..++. .+++.+|+.+....
T Consensus        78 ~~i~~~~q~-~~~~~-~~tv~e~l~~~~~~  105 (218)
T cd03266          78 RRLGFVSDS-TGLYD-RLTARENLEYFAGL  105 (218)
T ss_pred             hhEEEecCC-cccCc-CCCHHHHHHHHHHH
Confidence            346677766 35554 47999999876543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.73  E-value=9.1e-18  Score=149.08  Aligned_cols=94  Identities=12%  Similarity=0.174  Sum_probs=76.9

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPD  150 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~  150 (189)
                      +|+++|+++.|+.  +  .+|+|+||+|.+||+++|+|+||||||||+|+|+|+++   +++|++...+..      .++
T Consensus         2 ~L~i~~l~~~~~~--~--~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r   74 (353)
T PRK10851          2 SIEIANIKKSFGR--T--QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR   74 (353)
T ss_pred             EEEEEEEEEEeCC--e--EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence            5899999999975  2  36789999999999999999999999999999999998   999997443321      123


Q ss_pred             eEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       151 ~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      ..+|++|+ +.+++. +++.+|+.+++..
T Consensus        75 ~i~~v~Q~-~~l~p~-~tv~eni~~~~~~  101 (353)
T PRK10851         75 KVGFVFQH-YALFRH-MTVFDNIAFGLTV  101 (353)
T ss_pred             CEEEEecC-cccCCC-CcHHHHHHhhhhh
Confidence            46777865 677774 9999999987653

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.73  E-value=5.2e-18  Score=155.96  Aligned_cols=97  Identities=18%  Similarity=0.192  Sum_probs=79.8

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC-----
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----  148 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~-----  148 (189)
                      .+++++++|++|+|++    +.||++|||++++||+++|+|+||+|||||+|+|+|.++   |++|+++..+...     
T Consensus         5 ~~~ll~~~~i~K~Fgg----V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp   77 (500)
T COG1129           5 TPPLLELRGISKSFGG----VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSP   77 (500)
T ss_pred             ccceeeeecceEEcCC----ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCH
Confidence            4568999999999987    578999999999999999999999999999999999999   9999985544321     


Q ss_pred             ----CCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       149 ----~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                          ..-+.+++| ..++.+. +||.+|+.++...
T Consensus        78 ~~A~~~GI~~V~Q-El~L~p~-LsVaeNifLgre~  110 (500)
T COG1129          78 RDALAAGIATVHQ-ELSLVPN-LSVAENIFLGREP  110 (500)
T ss_pred             HHHHhCCcEEEee-chhccCC-ccHHHHhhccccc
Confidence                122345554 4888885 9999999876643

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.73  E-value=1.8e-17  Score=145.54  Aligned_cols=104  Identities=12%  Similarity=0.068  Sum_probs=75.9

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc-cCCCceeeccCCCC------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASSFDSQVK------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~-~~p~~G~i~~~~~~------  147 (189)
                      |.+|+++|+++.|+.....+.+|+||||+|++||++||+|+||||||||+++|+|++++ -.+++|++...+..      
T Consensus         1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~   80 (326)
T PRK11022          1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE   80 (326)
T ss_pred             CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence            34799999999997532224578999999999999999999999999999999999862 11367876433321      


Q ss_pred             ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                            +.+..++++|+.+..+...+++.+++...+.
T Consensus        81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~  117 (326)
T PRK11022         81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIK  117 (326)
T ss_pred             HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHH
Confidence                  1124678888755433335788877766543

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.73  E-value=2.4e-17  Score=142.86  Aligned_cols=94  Identities=20%  Similarity=0.220  Sum_probs=74.7

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------C
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------P  148 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~  148 (189)
                      .+|+++|+++.|++  +  .+|++|||+|++|++++|+|+||||||||+|+|+|+++   |++|++...+..       .
T Consensus         3 ~~i~~~~l~~~~~~--~--~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   75 (303)
T TIGR01288         3 VAIDLVGVSKSYGD--K--VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLA   75 (303)
T ss_pred             cEEEEEeEEEEeCC--e--EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHH
Confidence            47999999999975  2  36789999999999999999999999999999999998   899997543321       1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      +...++++|+ ..+++ .+++.+|+.+...
T Consensus        76 ~~~i~~v~q~-~~~~~-~~tv~e~l~~~~~  103 (303)
T TIGR01288        76 RVAIGVVPQF-DNLDP-EFTVRENLLVFGR  103 (303)
T ss_pred             hhcEEEEecc-ccCCc-CCcHHHHHHHHHH
Confidence            3346777865 44554 4899999986543

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.73  E-value=5.1e-18  Score=138.01  Aligned_cols=100  Identities=22%  Similarity=0.240  Sum_probs=85.6

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------  147 (189)
                      +|+++++++..+.....+..|++|+|.|.+||.++|||+||||||||+-+++||..   +++|.+...+..         
T Consensus         6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~r   82 (228)
T COG4181           6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDAR   82 (228)
T ss_pred             eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHHH
Confidence            79999999999876566778999999999999999999999999999999999998   999997433211         


Q ss_pred             ---CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                         +.+..+++| |+|++.++ |+..||++.++.+.|
T Consensus        83 A~~R~~~vGfVF-QSF~Lip~-ltAlENV~lPleL~g  117 (228)
T COG4181          83 AALRARHVGFVF-QSFHLIPN-LTALENVALPLELRG  117 (228)
T ss_pred             HHhhccceeEEE-Eeeecccc-chhhhhccchhhhcC
Confidence               334567777 46999986 999999999998887

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.73  E-value=1.7e-17  Score=136.33  Aligned_cols=98  Identities=17%  Similarity=0.236  Sum_probs=73.3

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----------  147 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----------  147 (189)
                      |+++|+++.|+.......+++++||++++|++++|+|+||||||||+|+|+|+++   +++|++...+..          
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   77 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSEKELA   77 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcchhHHH
Confidence            4789999999652101236789999999999999999999999999999999998   899987433211          


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~  180 (189)
                        .++..++++|+ ..++. .+++.+|+.+.....
T Consensus        78 ~~~~~~i~~~~q~-~~~~~-~~tv~e~l~~~~~~~  110 (218)
T cd03255          78 AFRRRHIGFVFQS-FNLLP-DLTALENVELPLLLA  110 (218)
T ss_pred             HHHhhcEEEEeec-cccCC-CCcHHHHHHHHHhhc
Confidence              12345677765 34444 379999998865433

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=99.72  E-value=2.4e-17  Score=135.90  Aligned_cols=95  Identities=19%  Similarity=0.208  Sum_probs=73.5

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CCC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PPD  150 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~~  150 (189)
                      |+++|+++.|++  +  .+++|+||++.+||+++|+|+||||||||+++|+|+++   |++|++...+..       .++
T Consensus         1 i~~~~~~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (220)
T cd03265           1 IEVENLVKKYGD--F--EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR   73 (220)
T ss_pred             CEEEEEEEEECC--E--EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence            578999999975  2  35779999999999999999999999999999999998   899987433311       123


Q ss_pred             eEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       151 ~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                      ..++++|+ ..+++ .+++.+|+.+.....+
T Consensus        74 ~i~~~~q~-~~~~~-~~tv~~~l~~~~~~~~  102 (220)
T cd03265          74 RIGIVFQD-LSVDD-ELTGWENLYIHARLYG  102 (220)
T ss_pred             cEEEecCC-ccccc-cCcHHHHHHHHHHHcC
Confidence            45677766 34444 4899999988655433

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.72  E-value=2.6e-17  Score=144.80  Aligned_cols=102  Identities=12%  Similarity=0.147  Sum_probs=77.1

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCC---ceeeccCCCC---
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVK---  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~---~G~i~~~~~~---  147 (189)
                      .+++|+++|+++.|+.....+.+|+||||+|.+||+++|+|+||||||||+++|+|+++   +.   +|++...+..   
T Consensus         9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~~   85 (330)
T PRK09473          9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREILN   85 (330)
T ss_pred             CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECCc
Confidence            45689999999999642223457899999999999999999999999999999999998   54   8887443321   


Q ss_pred             ---------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ---------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                               +.+..++++|+....+...+++.+|+.+...
T Consensus        86 ~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~  125 (330)
T PRK09473         86 LPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLM  125 (330)
T ss_pred             CCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHH
Confidence                     1235678888754333335888888876554

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.72  E-value=2.8e-17  Score=134.43  Aligned_cols=93  Identities=19%  Similarity=0.267  Sum_probs=72.9

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----CCCeEE
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----PPDVAT  153 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----~~~~~~  153 (189)
                      |+++|+++.|++  +  .+++++||++.+|++++|+|+||||||||+++|+|+++   +++|++...+..    .++..+
T Consensus         1 l~~~~l~~~~~~--~--~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~i~   73 (210)
T cd03269           1 LEVENVTKRFGR--V--TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIAARNRIG   73 (210)
T ss_pred             CEEEEEEEEECC--E--EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHHHHccEE
Confidence            478999999975  2  25679999999999999999999999999999999998   899997544322    133456


Q ss_pred             EEecCCCCCCCCccChhhhHHHHHHH
Q 029679          154 VLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       154 vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      +++|+ ..++. .+++.+|+.+....
T Consensus        74 ~~~q~-~~~~~-~~tv~e~l~~~~~~   97 (210)
T cd03269          74 YLPEE-RGLYP-KMKVIDQLVYLAQL   97 (210)
T ss_pred             EeccC-CcCCc-CCcHHHHHHHHHHH
Confidence            77765 44454 37999999876543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.72  E-value=1.5e-17  Score=138.43  Aligned_cols=92  Identities=20%  Similarity=0.252  Sum_probs=72.2

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----------  147 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----------  147 (189)
                      |+++|+++.|+.  +  .+++|+||+|++||+++|+|+||||||||+|+|+|+++   |++|++...+..          
T Consensus         1 l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~   73 (235)
T cd03261           1 IELRGLTKSFGG--R--TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY   73 (235)
T ss_pred             CeEEEEEEEECC--E--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence            478999999975  2  35779999999999999999999999999999999998   899987433211          


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                       .+...++++|+ ..+++ .+++.+|+.+...
T Consensus        74 ~~~~~i~~v~q~-~~~~~-~~tv~~~l~~~~~  103 (235)
T cd03261          74 RLRRRMGMLFQS-GALFD-SLTVFENVAFPLR  103 (235)
T ss_pred             HHhcceEEEccC-cccCC-CCcHHHHHHHHHh
Confidence             12345677765 45555 4899999987643

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.72  E-value=2.3e-17  Score=144.98  Aligned_cols=101  Identities=13%  Similarity=0.132  Sum_probs=77.0

Q ss_pred             CCeEEEeeeEEEcCccc------eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-
Q 029679           75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-  147 (189)
                      +++|+++|+++.|+...      ..+.+|+||||+|.+||++||+|+||||||||+++|+|+++   +++|++...+.. 
T Consensus         3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l   79 (327)
T PRK11308          3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL   79 (327)
T ss_pred             CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence            36899999999996311      12467899999999999999999999999999999999998   888987443311 


Q ss_pred             ----------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ----------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                                .++..++++|+....+...+++.+++.+.+.
T Consensus        80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~  120 (327)
T PRK11308         80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLL  120 (327)
T ss_pred             CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHH
Confidence                      1234678888754333335889888876554

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.72  E-value=3.1e-17  Score=135.27  Aligned_cols=97  Identities=19%  Similarity=0.203  Sum_probs=73.5

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---CCCeEEE
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVATV  154 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---~~~~~~v  154 (189)
                      |+++|+++.|+.......+++++||+|++|++++|+|+||||||||+|+|+|+++   |++|++...+..   .+...++
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~i~~   77 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPGPDRGY   77 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccccCcEEE
Confidence            4789999999752111246789999999999999999999999999999999998   899997543321   2334567


Q ss_pred             EecCCCCCCCCccChhhhHHHHHHH
Q 029679          155 LPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       155 v~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      ++|+ ..++. .+++.+|+.+....
T Consensus        78 v~q~-~~~~~-~~tv~e~l~~~~~~  100 (220)
T cd03293          78 VFQQ-DALLP-WLTVLDNVALGLEL  100 (220)
T ss_pred             Eecc-ccccc-CCCHHHHHHHHHHH
Confidence            7765 34444 38999999876543

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.72  E-value=2.4e-17  Score=136.78  Aligned_cols=98  Identities=18%  Similarity=0.228  Sum_probs=74.1

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P------  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~------  148 (189)
                      ||+++|+++.|+.......+++++||+|++||+++|+|+||||||||+++|+|+++   +++|++...+..  .      
T Consensus         1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (233)
T cd03258           1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGKEL   77 (233)
T ss_pred             CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence            48899999999752101135779999999999999999999999999999999998   889987433221  0      


Q ss_pred             ---CCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       149 ---~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                         ++..++++|+ ..+++ .+++.+|+.+....
T Consensus        78 ~~~~~~i~~~~q~-~~~~~-~~t~~e~l~~~~~~  109 (233)
T cd03258          78 RKARRRIGMIFQH-FNLLS-SRTVFENVALPLEI  109 (233)
T ss_pred             HHHHhheEEEccC-cccCC-CCcHHHHHHHHHHH
Confidence               2345677766 44554 38999999876543

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.72  E-value=2.6e-17  Score=135.31  Aligned_cols=96  Identities=20%  Similarity=0.241  Sum_probs=73.4

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CCC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PPD  150 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~~  150 (189)
                      |+++|+++.|+...+  .+++|+||++++||+++|+|+||||||||+++|+|+++   |++|++...+..       .++
T Consensus         1 l~~~~l~~~~~~~~~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   75 (220)
T cd03263           1 LQIRNLTKTYKKGTK--PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAARQ   75 (220)
T ss_pred             CEEEeeEEEeCCCCc--eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHHhh
Confidence            578999999965211  35789999999999999999999999999999999998   899987443321       123


Q ss_pred             eEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (189)
Q Consensus       151 ~~~vv~~~~~~l~~~~ltv~enl~~~~~~~  180 (189)
                      ..++++|+ ..++. .+++.+|+.+.....
T Consensus        76 ~i~~v~q~-~~~~~-~~tv~~~l~~~~~~~  103 (220)
T cd03263          76 SLGYCPQF-DALFD-ELTVREHLRFYARLK  103 (220)
T ss_pred             hEEEecCc-CCccc-cCCHHHHHHHHHHHc
Confidence            45677765 44444 389999998765443

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.72  E-value=8.2e-18  Score=153.30  Aligned_cols=95  Identities=20%  Similarity=0.204  Sum_probs=79.4

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      ++.+++++++|.|++    +.|+++|||+|++|||.||+|+||+|||||+++|.|++.   |++|.++..+..       
T Consensus         2 ~~~l~~~~itK~f~~----~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~   74 (501)
T COG3845           2 EPALEMRGITKRFPG----VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPR   74 (501)
T ss_pred             CceEEEeccEEEcCC----EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHH
Confidence            357999999999986    578999999999999999999999999999999999999   999998554422       


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                        .+.-++++. |.|.+++. +||.||+.++..
T Consensus        75 dA~~~GIGMVh-QHF~Lv~~-lTV~ENiiLg~e  105 (501)
T COG3845          75 DAIRLGIGMVH-QHFMLVPT-LTVAENIILGLE  105 (501)
T ss_pred             HHHHcCCcEEe-eccccccc-cchhhhhhhcCc
Confidence              112345565 45899986 999999998764

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.72  E-value=3.7e-17  Score=134.50  Aligned_cols=97  Identities=16%  Similarity=0.162  Sum_probs=73.5

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------  147 (189)
                      +|+++|+++.|+.......+++++||++.+|++++|+|+||||||||+++|+|+++   +++|++...+..         
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER   77 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence            47899999999642111235789999999999999999999999999999999998   899987543311         


Q ss_pred             ---CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                         ++...++++|+ ..++. .+++.+|+.+...
T Consensus        78 ~~~~~~~i~~v~q~-~~~~~-~~tv~~~l~~~~~  109 (221)
T TIGR02211        78 AKLRNKKLGFIYQF-HHLLP-DFTALENVAMPLL  109 (221)
T ss_pred             HHHHHhcEEEEecc-cccCC-CCcHHHHHHHHHH
Confidence               01346777765 44454 3799999987543

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.72  E-value=3.6e-17  Score=133.58  Aligned_cols=93  Identities=19%  Similarity=0.202  Sum_probs=73.0

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC------CCe
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDV  151 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~------~~~  151 (189)
                      |+++|+++.|++  +  .+++++||++.+|++++|+|+||||||||+++|+|+++   +++|++...+...      ++.
T Consensus         1 l~~~~l~~~~~~--~--~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (208)
T cd03268           1 LKTNDLTKTYGK--K--RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR   73 (208)
T ss_pred             CEEEEEEEEECC--e--EeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence            478999999965  2  36779999999999999999999999999999999998   8999875443221      234


Q ss_pred             EEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          152 ATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       152 ~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      ..+++|+ ..+++ .+++.+|+.+....
T Consensus        74 i~~~~q~-~~~~~-~~tv~e~l~~~~~~   99 (208)
T cd03268          74 IGALIEA-PGFYP-NLTARENLRLLARL   99 (208)
T ss_pred             EEEecCC-CccCc-cCcHHHHHHHHHHh
Confidence            5677765 44554 48999999886543

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.72  E-value=4.2e-17  Score=138.16  Aligned_cols=94  Identities=14%  Similarity=0.113  Sum_probs=73.4

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---CCCeEE
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVAT  153 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---~~~~~~  153 (189)
                      ||+++|+++.|++  +  ..++|+||+|++|++++|+|+||||||||+++|+|+++   |++|++...+..   .....+
T Consensus         1 ml~~~~l~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   73 (255)
T PRK11248          1 MLQISHLYADYGG--K--PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAERG   73 (255)
T ss_pred             CEEEEEEEEEeCC--e--eeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcEE
Confidence            4899999999975  2  35779999999999999999999999999999999998   899987443321   122356


Q ss_pred             EEecCCCCCCCCccChhhhHHHHHHH
Q 029679          154 VLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       154 vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      +++|+ ..+++ .+++.+|+.+....
T Consensus        74 ~v~q~-~~~~~-~~tv~e~l~~~~~~   97 (255)
T PRK11248         74 VVFQN-EGLLP-WRNVQDNVAFGLQL   97 (255)
T ss_pred             EEeCC-CccCC-CCcHHHHHHhHHHH
Confidence            77765 44554 37999999876543

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.71  E-value=9.4e-18  Score=142.50  Aligned_cols=99  Identities=19%  Similarity=0.224  Sum_probs=84.2

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc-CCCC---CCCeE
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK---PPDVA  152 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~-~~~~---~~~~~  152 (189)
                      +|++++|+|+|++.    .||+|+||.+++|+++|++|+||+||||++|+|+|++.   +++|.|.. +...   ..+.+
T Consensus         2 ~L~ie~vtK~Fg~k----~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~rI   74 (300)
T COG4152           2 ALEIEGVTKSFGDK----KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNRI   74 (300)
T ss_pred             ceEEecchhccCce----eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhhc
Confidence            58999999999873    57889999999999999999999999999999999999   99999844 3322   24567


Q ss_pred             EEEecCCCCCCCCccChhhhHHHHHHHcCCCC
Q 029679          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV  184 (189)
Q Consensus       153 ~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~~  184 (189)
                      +|.|.. ..+++. ++|.+.+.|...+.|++.
T Consensus        75 GyLPEE-RGLy~k-~tv~dql~yla~LkGm~~  104 (300)
T COG4152          75 GYLPEE-RGLYPK-MTVEDQLKYLAELKGMPK  104 (300)
T ss_pred             ccChhh-hccCcc-CcHHHHHHHHHHhcCCcH
Confidence            888854 677775 999999999999988864

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.71  E-value=3.8e-17  Score=136.42  Aligned_cols=93  Identities=14%  Similarity=0.255  Sum_probs=73.2

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPD  150 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~  150 (189)
                      +|+++|+++.|++  +  .+++||||++.+|++++|+|+||||||||+|+|+|+++   +++|++...+..      .+.
T Consensus         2 ~l~~~~l~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (239)
T cd03296           2 SIEVRNVSKRFGD--F--VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER   74 (239)
T ss_pred             EEEEEeEEEEECC--E--EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence            5899999999975  2  35779999999999999999999999999999999998   899987443311      123


Q ss_pred             eEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       151 ~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      ..++++|+ ..++. .+++.+|+.+...
T Consensus        75 ~i~~v~q~-~~~~~-~~tv~e~l~~~~~  100 (239)
T cd03296          75 NVGFVFQH-YALFR-HMTVFDNVAFGLR  100 (239)
T ss_pred             ceEEEecC-CcccC-CCCHHHHHhhhhh
Confidence            45677765 44454 3899999987654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.71  E-value=3.6e-17  Score=143.67  Aligned_cols=102  Identities=11%  Similarity=0.115  Sum_probs=74.8

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc-cCCCceeeccCCCC------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASSFDSQVK------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~-~~p~~G~i~~~~~~------  147 (189)
                      |++|+++|+++.|+.......+|+||||+|.+||+++|+|+||||||||+++|+|++++ ..+++|++...+..      
T Consensus         1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~   80 (330)
T PRK15093          1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence            35899999999995321224578899999999999999999999999999999999862 12477886433211      


Q ss_pred             ------CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                            .++..++++|+....+...+++.+|+.+.
T Consensus        81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~  115 (330)
T PRK15093         81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQN  115 (330)
T ss_pred             HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHH
Confidence                  12346788877543333357888888764

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.71  E-value=3.5e-17  Score=134.10  Aligned_cols=94  Identities=18%  Similarity=0.209  Sum_probs=72.8

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------  147 (189)
                      ||+++|+++.|+.. +  .+++|+||+|++|++++|+|+||||||||+++|+|+++   +++|++...+..         
T Consensus         1 ~l~~~~l~~~~~~~-~--~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (214)
T TIGR02673         1 MIEFHNVSKAYPGG-V--AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQL   74 (214)
T ss_pred             CEEEEeeeEEeCCC-c--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence            48899999999521 2  35779999999999999999999999999999999998   889987443311         


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                        .++..++++|+ ..++. .+++.+|+.+...
T Consensus        75 ~~~~~~i~~~~q~-~~~~~-~~tv~~~l~~~~~  105 (214)
T TIGR02673        75 PLLRRRIGVVFQD-FRLLP-DRTVYENVALPLE  105 (214)
T ss_pred             HHHHhheEEEecC-hhhcc-CCcHHHHHHHHHH
Confidence              12345677765 44554 3899999988654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.71  E-value=2.6e-17  Score=135.31  Aligned_cols=92  Identities=20%  Similarity=0.199  Sum_probs=72.0

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------C
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------P  148 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------~  148 (189)
                      |+++|+++.|++  +  .+++++||++.+||+++|+|+||||||||+++|+|+++   |++|++...+..         .
T Consensus         1 l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (222)
T cd03224           1 LEVENLNAGYGK--S--QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA   73 (222)
T ss_pred             CEEeeEEeecCC--e--eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence            578999999975  2  35779999999999999999999999999999999998   899987433211         1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      ++..++++|+ ..+++ .+++.+|+.+...
T Consensus        74 ~~~i~~~~q~-~~~~~-~~t~~~~l~~~~~  101 (222)
T cd03224          74 RAGIGYVPEG-RRIFP-ELTVEENLLLGAY  101 (222)
T ss_pred             hcCeEEeccc-cccCC-CCcHHHHHHHHhh
Confidence            2335677765 45555 4899999987654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.71  E-value=3.9e-17  Score=139.15  Aligned_cols=95  Identities=16%  Similarity=0.196  Sum_probs=74.5

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      +++|+++|+++.|+.  +  .+++||||+|++|++++|+|+||||||||+++|+|+++   |++|++...+..       
T Consensus         5 ~~~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~   77 (269)
T PRK11831          5 ANLVDMRGVSFTRGN--R--CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRS   77 (269)
T ss_pred             cceEEEeCeEEEECC--E--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChh
Confidence            468999999999975  2  35779999999999999999999999999999999998   889987433211       


Q ss_pred             ----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                          .++..++++|+ ..+++ .+++.+|+.+...
T Consensus        78 ~~~~~~~~i~~v~q~-~~~~~-~~tv~enl~~~~~  110 (269)
T PRK11831         78 RLYTVRKRMSMLFQS-GALFT-DMNVFDNVAYPLR  110 (269)
T ss_pred             hHHHHhhcEEEEecc-cccCC-CCCHHHHHHHHHH
Confidence                12345677765 45555 3799999987643

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=99.71  E-value=3.7e-17  Score=134.00  Aligned_cols=92  Identities=18%  Similarity=0.262  Sum_probs=71.7

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCCe
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDV  151 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~~  151 (189)
                      |+++|+++.|+.  +  .+++|+||++.+||+++|+|+||||||||+++|+|+++   |++|++...+..      .+..
T Consensus         1 l~~~~l~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~   73 (213)
T cd03259           1 LELKGLSKTYGS--V--RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN   73 (213)
T ss_pred             CeeeeeEEEeCC--e--eeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence            478999999975  2  35779999999999999999999999999999999998   899987433211      1234


Q ss_pred             EEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          152 ATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       152 ~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      .++++|+ ...+. .+++.+|+.+...
T Consensus        74 i~~v~q~-~~~~~-~~tv~~~l~~~~~   98 (213)
T cd03259          74 IGMVFQD-YALFP-HLTVAENIAFGLK   98 (213)
T ss_pred             EEEEcCc-hhhcc-CCcHHHHHHhHHH
Confidence            5677765 44554 3799999987653

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.71  E-value=4.6e-17  Score=141.07  Aligned_cols=96  Identities=23%  Similarity=0.271  Sum_probs=76.2

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PP  149 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~  149 (189)
                      +++++|+++.|++  .  .+|+|+||++++||++||+|+||||||||+|+|+|+++   |++|++...+..       .+
T Consensus         2 ~l~~~~l~~~~~~--~--~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~   74 (301)
T TIGR03522         2 SIRVSSLTKLYGT--Q--NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ   74 (301)
T ss_pred             EEEEEEEEEEECC--E--EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence            4899999999975  2  36789999999999999999999999999999999998   999997443321       12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                      +..++++++ ..+++ .+++.+|+.+.....+
T Consensus        75 ~~ig~~~q~-~~l~~-~~tv~e~l~~~~~~~~  104 (301)
T TIGR03522        75 RNIGYLPEH-NPLYL-DMYVREYLQFIAGIYG  104 (301)
T ss_pred             hceEEecCC-CCCCC-CCcHHHHHHHHHHHcC
Confidence            346777765 45555 4899999987665544

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.71  E-value=3.8e-17  Score=136.98  Aligned_cols=93  Identities=17%  Similarity=0.276  Sum_probs=73.0

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ++|+++|+++.|++  +  .+++||||++.+|++++|+|+||||||||+++|+|+++   +++|++...+..        
T Consensus         2 ~~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   74 (250)
T PRK11264          2 SAIEVKNLVKKFHG--Q--TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSLS   74 (250)
T ss_pred             CcEEEeceEEEECC--e--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcccccccc
Confidence            47999999999975  2  35779999999999999999999999999999999998   889987433210        


Q ss_pred             --------CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 --------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                              .+...++++|+ ..+++ .+++.+|+.+..
T Consensus        75 ~~~~~~~~~~~~i~~v~q~-~~~~~-~~tv~e~l~~~~  110 (250)
T PRK11264         75 QQKGLIRQLRQHVGFVFQN-FNLFP-HRTVLENIIEGP  110 (250)
T ss_pred             chhhHHHHhhhhEEEEecC-cccCC-CCCHHHHHHHHH
Confidence                    12345677765 44554 379999998753

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.71  E-value=5e-17  Score=132.89  Aligned_cols=94  Identities=21%  Similarity=0.218  Sum_probs=72.9

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PP  149 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~  149 (189)
                      +|+++|+++.|+.  +  .+++|+||+|++||+++|+|+||||||||+++|+|+++   |++|++...+..       .+
T Consensus         1 ~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~   73 (204)
T PRK13538          1 MLEARNLACERDE--R--ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH   73 (204)
T ss_pred             CeEEEEEEEEECC--E--EEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence            5899999999975  2  35779999999999999999999999999999999998   899987543321       12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      +..++++++ ..+++ .+++.+|+.+....
T Consensus        74 ~~~~~~~~~-~~~~~-~~tv~e~l~~~~~~  101 (204)
T PRK13538         74 QDLLYLGHQ-PGIKT-ELTALENLRFYQRL  101 (204)
T ss_pred             hheEEeCCc-cccCc-CCcHHHHHHHHHHh
Confidence            234566654 44444 47999999876543

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.71  E-value=4.1e-17  Score=135.19  Aligned_cols=92  Identities=22%  Similarity=0.294  Sum_probs=72.0

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------C
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------P  148 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------~  148 (189)
                      |+++|+++.|++  +  .+++|+||++.+|++++|+|+||||||||+|+|+|+++   |++|++...+..         .
T Consensus         1 l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   73 (232)
T cd03218           1 LRAENLSKRYGK--R--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA   73 (232)
T ss_pred             CeEEEEEEEeCC--E--EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence            478999999975  2  35779999999999999999999999999999999998   899987443321         1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      +...++++|+ ..+++ .+++.+|+.+...
T Consensus        74 ~~~i~~~~q~-~~~~~-~~tv~~~l~~~~~  101 (232)
T cd03218          74 RLGIGYLPQE-ASIFR-KLTVEENILAVLE  101 (232)
T ss_pred             hccEEEecCC-ccccc-cCcHHHHHHHHHH
Confidence            1235677765 44555 3899999987654

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.71  E-value=5.2e-17  Score=134.05  Aligned_cols=95  Identities=16%  Similarity=0.150  Sum_probs=72.7

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------  147 (189)
                      +|+++|+++.|... +  ..++|+||+|.+||+++|+|+||||||||+++|+|+++   +++|++...+..         
T Consensus         1 ~l~~~~l~~~~~~~-~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~   74 (222)
T PRK10908          1 MIRFEHVSKAYLGG-R--QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNREV   74 (222)
T ss_pred             CEEEEeeEEEecCC-C--eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhHH
Confidence            48899999999421 2  35779999999999999999999999999999999998   899987443311         


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                        .++...|++|+ ..++. .+++.+|+.+....
T Consensus        75 ~~~~~~i~~~~q~-~~~~~-~~tv~~~l~~~~~~  106 (222)
T PRK10908         75 PFLRRQIGMIFQD-HHLLM-DRTVYDNVAIPLII  106 (222)
T ss_pred             HHHHhheEEEecC-ccccc-cccHHHHHHhHHHh
Confidence              12345677765 34444 37999999876543

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.71  E-value=4.3e-17  Score=139.77  Aligned_cols=100  Identities=10%  Similarity=0.081  Sum_probs=76.1

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ++|+++|+++.|+... ...+|+||||+|++||+++|+|+||||||||+++|+|+++   |++|++...+..        
T Consensus         3 ~~l~~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (279)
T PRK13650          3 NIIEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVWD   78 (279)
T ss_pred             ceEEEEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence            3799999999996421 1236789999999999999999999999999999999998   999987443321        


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~  180 (189)
                      .++..++++|+....+. .+++.+|+.+.....
T Consensus        79 ~~~~i~~v~q~~~~~~~-~~tv~eni~~~~~~~  110 (279)
T PRK13650         79 IRHKIGMVFQNPDNQFV-GATVEDDVAFGLENK  110 (279)
T ss_pred             HHhhceEEEcChHHhcc-cccHHHHHHhhHHhC
Confidence            12345777876333444 379999998865443

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.71  E-value=4.1e-17  Score=140.02  Aligned_cols=98  Identities=14%  Similarity=0.123  Sum_probs=75.6

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ++|+++|+++.|+...  ..+++++||+|.+||+++|+|+||||||||+++|+|+++   |++|++...+..        
T Consensus         4 ~~l~~~~l~~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~~~   78 (279)
T PRK13635          4 EIIRVEHISFRYPDAA--TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETVWD   78 (279)
T ss_pred             ceEEEEEEEEEeCCCC--ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence            5799999999996421  236789999999999999999999999999999999998   899987443321        


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      .++..+|++|+....+. .+++.+|+.+....
T Consensus        79 ~~~~i~~~~q~~~~~~~-~~tv~enl~~~~~~  109 (279)
T PRK13635         79 VRRQVGMVFQNPDNQFV-GATVQDDVAFGLEN  109 (279)
T ss_pred             HhhheEEEEeCHHHhcc-cccHHHHHhhhHhh
Confidence            12346778876322343 37999999876543

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.70  E-value=8.6e-17  Score=132.51  Aligned_cols=95  Identities=16%  Similarity=0.109  Sum_probs=74.0

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----CC
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PP  149 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~~  149 (189)
                      .++|+++|+++.|++  +  .+++++||++.+||+++|+|+||||||||+++|+|+++   +++|++...+..     ..
T Consensus         9 ~~~l~~~~l~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~~   81 (214)
T PRK13543          9 PPLLAAHALAFSRNE--E--PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDRS   81 (214)
T ss_pred             cceEEEeeEEEecCC--c--eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhhh
Confidence            468999999999975  2  25779999999999999999999999999999999998   899987444321     12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      +..+++++. ..++. .+++.+|+.+...
T Consensus        82 ~~i~~~~q~-~~~~~-~~t~~e~l~~~~~  108 (214)
T PRK13543         82 RFMAYLGHL-PGLKA-DLSTLENLHFLCG  108 (214)
T ss_pred             hceEEeecC-ccccc-CCcHHHHHHHHHH
Confidence            235666654 44444 3799999877654

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=4.5e-17  Score=135.69  Aligned_cols=94  Identities=15%  Similarity=0.186  Sum_probs=74.1

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      +++|+++|+++.|+.  +  .+++++||+|++||+++|+|+||||||||+++|+|+++   |++|++...+..       
T Consensus         3 ~~~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~   75 (237)
T PRK11614          3 KVMLSFDKVSAHYGK--I--QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTA   75 (237)
T ss_pred             ccEEEEEeEEEeeCC--c--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHH
Confidence            468999999999975  2  35779999999999999999999999999999999998   899987433321       


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                        .+...++++++ ...++ .+++.+|+.+..
T Consensus        76 ~~~~~~i~~~~q~-~~~~~-~~tv~~~l~~~~  105 (237)
T PRK11614         76 KIMREAVAIVPEG-RRVFS-RMTVEENLAMGG  105 (237)
T ss_pred             HHHHhCEEEeccC-cccCC-CCcHHHHHHHhh
Confidence              12345677765 44554 379999998754

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.70  E-value=5.8e-17  Score=132.93  Aligned_cols=93  Identities=18%  Similarity=0.161  Sum_probs=71.9

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----CCCe
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDV  151 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~~~~  151 (189)
                      +|+++|+++.|+.  +  .+++|+||+|.+||+++|+|+||||||||+++|+|+++   +++|++...+..     .+..
T Consensus         2 ~l~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   74 (207)
T PRK13539          2 MLEGEDLACVRGG--R--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA   74 (207)
T ss_pred             EEEEEeEEEEECC--e--EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence            6899999999975  2  35789999999999999999999999999999999998   899987443321     1223


Q ss_pred             EEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          152 ATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       152 ~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      .++++++ ..++. .+++.+|+.+...
T Consensus        75 ~~~~~~~-~~~~~-~~tv~~~l~~~~~   99 (207)
T PRK13539         75 CHYLGHR-NAMKP-ALTVAENLEFWAA   99 (207)
T ss_pred             cEEecCC-CcCCC-CCcHHHHHHHHHH
Confidence            4566654 33333 4899999877543

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.70  E-value=6.4e-17  Score=132.44  Aligned_cols=92  Identities=15%  Similarity=0.210  Sum_probs=71.7

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCCe
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDV  151 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~~  151 (189)
                      |+++|+++.|++  +  .+++|+||+|.+||+++|+|+||||||||+++|+|+++   +++|++...+..      .+..
T Consensus         1 i~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~   73 (213)
T cd03301           1 VELENVTKRFGN--V--TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD   73 (213)
T ss_pred             CEEEeeEEEECC--e--eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence            478999999975  2  35779999999999999999999999999999999998   889987433211      1234


Q ss_pred             EEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          152 ATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       152 ~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      .++++|+ ..++. .+++.+|+.+...
T Consensus        74 i~~~~q~-~~~~~-~~tv~~~l~~~~~   98 (213)
T cd03301          74 IAMVFQN-YALYP-HMTVYDNIAFGLK   98 (213)
T ss_pred             EEEEecC-hhhcc-CCCHHHHHHHHHH
Confidence            5677765 34554 3799999987654

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.70  E-value=4.1e-17  Score=136.24  Aligned_cols=93  Identities=22%  Similarity=0.302  Sum_probs=73.4

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      .+|+++|+++.|++  +  .+++|+||++++|++++|+|+||||||||+|+|+|+++   +++|++...+..        
T Consensus         2 ~~l~~~~l~~~~~~--~--~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   74 (241)
T PRK10895          2 ATLTAKNLAKAYKG--R--RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLHA   74 (241)
T ss_pred             ceEEEeCcEEEeCC--E--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence            47999999999975  2  35779999999999999999999999999999999998   889987443311        


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                       .+...++++|+ ..++. .+++.+|+.+..
T Consensus        75 ~~~~~i~~~~q~-~~~~~-~~tv~enl~~~~  103 (241)
T PRK10895         75 RARRGIGYLPQE-ASIFR-RLSVYDNLMAVL  103 (241)
T ss_pred             HHHhCeEEeccC-Ccccc-cCcHHHHHhhhh
Confidence             12345677765 44454 379999998754

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.70  E-value=6.1e-17  Score=149.69  Aligned_cols=148  Identities=14%  Similarity=0.167  Sum_probs=99.3

Q ss_pred             CcccccccccccCCCCCcccchhhchhhhhcCCCchhhHHHHhcccCCccccCcCCCCCeEEEeeeEEEcCccc------
Q 029679           18 STESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALA------   91 (189)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~yt~~L~~a~p~~~~~~~~~~~~~~l~~~~l~~~~~~~~------   91 (189)
                      ...+..|++|.+-+.+        +..+++..|.+++++.++...+............++|+++|+++.|+...      
T Consensus       224 ~dri~~l~~G~i~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~  295 (529)
T PRK15134        224 ADRVAVMQNGRCVEQN--------RAATLFSAPTHPYTQKLLNSEPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKRT  295 (529)
T ss_pred             cCEEEEEECCEEEEeC--------CHHHHhhCCCCHHHHHHHHhCccccccccCCCCCCcccccCcEEEeecCccccccc
Confidence            3567778888764322        22455667778888888765432111111112456899999999995210      


Q ss_pred             -eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----------CCCeEEEEecCC
Q 029679           92 -QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----------PPDVATVLPMDG  159 (189)
Q Consensus        92 -~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----------~~~~~~vv~~~~  159 (189)
                       ....++++|||+|++||+++|+|+||||||||+|+|+|++    +++|++...+..           .+...++++|+.
T Consensus       296 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~  371 (529)
T PRK15134        296 VDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP  371 (529)
T ss_pred             cccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECCEEccccchhhHHHhhhceEEEEeCc
Confidence             0123678999999999999999999999999999999998    467887433211           023357778764


Q ss_pred             C-CCCCCccChhhhHHHHHH
Q 029679          160 F-HLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       160 ~-~l~~~~ltv~enl~~~~~  178 (189)
                      . .+++ .+++.+|+.+...
T Consensus       372 ~~~l~~-~~tv~e~l~~~~~  390 (529)
T PRK15134        372 NSSLNP-RLNVLQIIEEGLR  390 (529)
T ss_pred             hhhcCC-cccHHHHHHHHHH
Confidence            2 3444 4899999988653

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.70  E-value=4.5e-17  Score=133.13  Aligned_cols=91  Identities=20%  Similarity=0.282  Sum_probs=71.0

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----------  147 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----------  147 (189)
                      |+++|+++.|+.  +  .+++++||++.+|++++|+|+||||||||+++|+|+++   +++|++...+..          
T Consensus         1 l~~~~l~~~~~~--~--~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (213)
T cd03262           1 IEIKNLHKSFGD--F--HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE   73 (213)
T ss_pred             CEEEEEEEEECC--e--EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence            478999999975  2  35779999999999999999999999999999999998   899987443311          


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      .++...+++|+ ..+++ .+++.+|+.+..
T Consensus        74 ~~~~i~~~~q~-~~~~~-~~t~~e~l~~~~  101 (213)
T cd03262          74 LRQKVGMVFQQ-FNLFP-HLTVLENITLAP  101 (213)
T ss_pred             HHhcceEEecc-cccCC-CCcHHHHHHhHH
Confidence            12345677765 44554 379999998754

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.70  E-value=5.7e-17  Score=137.93  Aligned_cols=93  Identities=14%  Similarity=0.162  Sum_probs=73.8

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---CCCe
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDV  151 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---~~~~  151 (189)
                      .++|+++|+++.|++  +  .+++++||+|.+||+++|+|+||||||||+++|+|+++   +++|++..++..   .+..
T Consensus        10 ~~~l~i~~l~~~~~~--~--~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~   82 (257)
T PRK11247         10 GTPLLLNAVSKRYGE--R--TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEARED   82 (257)
T ss_pred             CCcEEEEEEEEEECC--c--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHhhCc
Confidence            367999999999975  2  35779999999999999999999999999999999998   899997544321   1234


Q ss_pred             EEEEecCCCCCCCCccChhhhHHHH
Q 029679          152 ATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       152 ~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      .++++|+ ..+++ .+++.+|+.+.
T Consensus        83 i~~v~q~-~~l~~-~~tv~enl~~~  105 (257)
T PRK11247         83 TRLMFQD-ARLLP-WKKVIDNVGLG  105 (257)
T ss_pred             eEEEecC-ccCCC-CCcHHHHHHhc
Confidence            5677765 34444 47999998764

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.70  E-value=6.2e-17  Score=131.94  Aligned_cols=92  Identities=17%  Similarity=0.149  Sum_probs=72.0

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PP  149 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~  149 (189)
                      ||+++|+++.|++  +  .+++++||++++||+++|+|+||||||||+++|+|+++   +++|++...+..       .+
T Consensus         1 ml~~~~l~~~~~~--~--~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~   73 (200)
T PRK13540          1 MLDVIELDFDYHD--Q--PLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ   73 (200)
T ss_pred             CEEEEEEEEEeCC--e--eEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence            4899999999975  2  25779999999999999999999999999999999998   899987543321       12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      +..++++++ ..+++ .+++.+|+.+..
T Consensus        74 ~~i~~~~q~-~~~~~-~~tv~~~~~~~~   99 (200)
T PRK13540         74 KQLCFVGHR-SGINP-YLTLRENCLYDI   99 (200)
T ss_pred             hheEEeccc-cccCc-CCCHHHHHHHHH
Confidence            235666654 44444 389999988753

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.70  E-value=4.6e-17  Score=135.20  Aligned_cols=93  Identities=22%  Similarity=0.217  Sum_probs=72.2

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C-------
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P-------  148 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~-------  148 (189)
                      |+++|+++.|+.  +  .+++++||++.+||+++|+|+||||||||+++|+|+++   +++|++...+..  .       
T Consensus         1 l~~~~l~~~~~~--~--~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (236)
T cd03219           1 LEVRGLTKRFGG--L--VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA   73 (236)
T ss_pred             CeeeeeEEEECC--E--EEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence            468999999975  2  35779999999999999999999999999999999998   889987433311  0       


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      +...++++|+ ..+++ .+++.+|+.+....
T Consensus        74 ~~~i~~v~q~-~~l~~-~~tv~~~l~~~~~~  102 (236)
T cd03219          74 RLGIGRTFQI-PRLFP-ELTVLENVMVAAQA  102 (236)
T ss_pred             hcCEEEEecc-ccccc-CCCHHHHHHHHHhh
Confidence            1235677765 45555 38999999886543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.70  E-value=9.7e-17  Score=134.87  Aligned_cols=98  Identities=13%  Similarity=0.073  Sum_probs=73.5

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK-----  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~-----  147 (189)
                      +++|+++|+++.|+.  +  .+++|+||+|.+||+++|+|+||||||||+++|+|++++.  .+++|++...+..     
T Consensus         2 ~~~l~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~   77 (253)
T PRK14267          2 KFAIETVNLRVYYGS--N--HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD   77 (253)
T ss_pred             cceEEEEeEEEEeCC--e--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence            457999999999975  2  3578999999999999999999999999999999999710  1248887433211     


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                           .+...++++|+ ..++. .+++.+|+.+...
T Consensus        78 ~~~~~~~~~i~~~~q~-~~~~~-~~tv~enl~~~~~  111 (253)
T PRK14267         78 VDPIEVRREVGMVFQY-PNPFP-HLTIYDNVAIGVK  111 (253)
T ss_pred             cChHHHhhceeEEecC-CccCC-CCcHHHHHHHHHH
Confidence                 12345677765 44554 3899999987653

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.70  E-value=5e-17  Score=134.41  Aligned_cols=92  Identities=16%  Similarity=0.186  Sum_probs=71.8

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh-----cccCCCceeeccCCCC-----
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFDSQVK-----  147 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~-----~~~~p~~G~i~~~~~~-----  147 (189)
                      |+++|+++.|+.  +  .+++|+||+|.+||+++|+|+||||||||+++|+|++     +   +++|++...+..     
T Consensus         1 i~~~~l~~~~~~--~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~   73 (227)
T cd03260           1 IELRDLNVYYGD--K--HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD   73 (227)
T ss_pred             CEEEEEEEEcCC--c--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence            578999999975  2  3577999999999999999999999999999999999     7   889987443321     


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                           .++..++++|+ ..++ . +++.+|+.+....
T Consensus        74 ~~~~~~~~~i~~~~q~-~~~~-~-~tv~e~l~~~~~~  107 (227)
T cd03260          74 VDVLELRRRVGMVFQK-PNPF-P-GSIYDNVAYGLRL  107 (227)
T ss_pred             hHHHHHHhhEEEEecC-chhc-c-ccHHHHHHhHHHh
Confidence                 12235677766 3444 3 8999999876543

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=7.4e-17  Score=138.94  Aligned_cols=99  Identities=15%  Similarity=0.150  Sum_probs=74.9

Q ss_pred             eEEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      +|+++|+++.|+.... ...+|+||||+|.+||+++|+|+||||||||+++|+|+++   |++|++...+..        
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   78 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL   78 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence            4899999999964211 1246889999999999999999999999999999999998   999987443311        


Q ss_pred             --CCCeEEEEecCCC-CCCCCccChhhhHHHHHHHc
Q 029679          148 --PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARR  180 (189)
Q Consensus       148 --~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~~~  180 (189)
                        .+...+|++|+.. .++  .+++++|+.+.....
T Consensus        79 ~~~~~~ig~v~q~~~~~~~--~~tv~e~l~~~~~~~  112 (287)
T PRK13637         79 SDIRKKVGLVFQYPEYQLF--EETIEKDIAFGPINL  112 (287)
T ss_pred             HHHhhceEEEecCchhccc--cccHHHHHHhHHHHC
Confidence              1234678887632 333  269999998765443

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.70  E-value=3.4e-17  Score=136.56  Aligned_cols=91  Identities=23%  Similarity=0.357  Sum_probs=71.3

Q ss_pred             eEEEeeeEEEcC-ccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~-~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      +|+++|+++.|+ +  +  .+++|+||++.+|++++|+|+||||||||+++|+|+++   |++|++...+..        
T Consensus         1 ~l~~~~l~~~~~~~--~--~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   73 (243)
T TIGR02315         1 MLEVENLSKVYPNG--K--QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKK   73 (243)
T ss_pred             CeEEEeeeeecCCC--c--ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHH
Confidence            478999999997 3  2  35779999999999999999999999999999999998   889987443311        


Q ss_pred             ---CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                         .+...++++|+ ..+++ .+++.+|+.+.
T Consensus        74 ~~~~~~~i~~v~q~-~~~~~-~~tv~~~l~~~  103 (243)
T TIGR02315        74 LRKLRRRIGMIFQH-YNLIE-RLTVLENVLHG  103 (243)
T ss_pred             HHHHHhheEEEcCC-Ccccc-cccHHHHHhhc
Confidence               12335677765 44554 37999998764

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.70  E-value=7.9e-17  Score=134.29  Aligned_cols=93  Identities=24%  Similarity=0.206  Sum_probs=72.3

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PP  149 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~  149 (189)
                      +|+++|+++.|+.  +  .+++++||+|.+||+++|+|+||||||||+++|+|+++   |++|.+...+..       ..
T Consensus         1 ~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~   73 (236)
T TIGR03864         1 ALEVAGLSFAYGA--R--RALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL   73 (236)
T ss_pred             CEEEEeeEEEECC--E--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence            4789999999975  2  35779999999999999999999999999999999998   899987433211       11


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      +...+++|+ ..++. .+++.+|+.+...
T Consensus        74 ~~i~~~~q~-~~~~~-~~t~~~~l~~~~~  100 (236)
T TIGR03864        74 ARLGVVFQQ-PTLDL-DLSVRQNLRYHAA  100 (236)
T ss_pred             hhEEEeCCC-CCCcc-cCcHHHHHHHHHH
Confidence            245677765 34444 3899999987554

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=7.1e-17  Score=138.10  Aligned_cols=96  Identities=18%  Similarity=0.117  Sum_probs=74.2

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ++|+++|+++.|+.. .  .+++|+||+|.+||+++|+|+||||||||+++|+|+++   |++|++...+..        
T Consensus         3 ~~l~~~~l~~~~~~~-~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   76 (274)
T PRK13647          3 NIIEVEDLHFRYKDG-T--KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEKW   76 (274)
T ss_pred             ceEEEEEEEEEeCCC-C--eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence            479999999999632 1  36789999999999999999999999999999999998   899997443321        


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      .+...+|++|+....+. .+++.+|+.+...
T Consensus        77 ~~~~i~~v~q~~~~~~~-~~tv~e~l~~~~~  106 (274)
T PRK13647         77 VRSKVGLVFQDPDDQVF-SSTVWDDVAFGPV  106 (274)
T ss_pred             HHhhEEEEecChhhhhc-cCcHHHHHHhhHH
Confidence            12346777876332333 3699999987654

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.70  E-value=8.1e-17  Score=133.63  Aligned_cols=95  Identities=14%  Similarity=0.128  Sum_probs=73.8

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------  147 (189)
                      ..++|+++|+++.|++  +  .+++|+||+|++||+++|+|+||||||||+++|+|+++   +++|++...+..      
T Consensus         4 ~~~~i~~~~l~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~   76 (225)
T PRK10247          4 NSPLLQLQNVGYLAGD--A--KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKP   76 (225)
T ss_pred             CCceEEEeccEEeeCC--c--eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCH
Confidence            3458999999999975  2  35779999999999999999999999999999999998   899987443321      


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                        .+...++++|+ ..++.  .++.+|+.+...
T Consensus        77 ~~~~~~i~~~~q~-~~l~~--~tv~enl~~~~~  106 (225)
T PRK10247         77 EIYRQQVSYCAQT-PTLFG--DTVYDNLIFPWQ  106 (225)
T ss_pred             HHHHhccEEEecc-ccccc--ccHHHHHHhHHh
Confidence              12345677765 44443  499999987543

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=7.1e-17  Score=137.67  Aligned_cols=98  Identities=12%  Similarity=0.129  Sum_probs=74.8

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      .++|+++|+++.|+...+  .+++++||++.+||+++|+|+||||||||+++|+|+++   +++|++...+..       
T Consensus         5 ~~~l~~~nl~~~~~~~~~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~   79 (271)
T PRK13632          5 SVMIKVENVSFSYPNSEN--NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENLK   79 (271)
T ss_pred             ceEEEEEeEEEEcCCCCc--cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCHH
Confidence            358999999999963212  35779999999999999999999999999999999998   899987443321       


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                       .++..+|++|+....+. .+++.+|+.+...
T Consensus        80 ~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~  110 (271)
T PRK13632         80 EIRKKIGIIFQNPDNQFI-GATVEDDIAFGLE  110 (271)
T ss_pred             HHhcceEEEEeCHHHhcC-cccHHHHHHhHHH
Confidence             12345677876322343 3799999987654

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.70  E-value=6e-17  Score=134.19  Aligned_cols=93  Identities=15%  Similarity=0.159  Sum_probs=72.6

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------C
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------P  148 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------~  148 (189)
                      |+++|+++.|+.  +  .+++|+||++.+||+++|+|+||||||||+++|+|+++   |++|++...+..         .
T Consensus         1 l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (230)
T TIGR03410         1 LEVSNLNVYYGQ--S--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA   73 (230)
T ss_pred             CEEEeEEEEeCC--e--EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence            478999999975  2  35779999999999999999999999999999999998   899987443311         1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      +...++++|+ ..+++ .+++.+|+.+....
T Consensus        74 ~~~i~~~~q~-~~~~~-~~tv~~~l~~~~~~  102 (230)
T TIGR03410        74 RAGIAYVPQG-REIFP-RLTVEENLLTGLAA  102 (230)
T ss_pred             HhCeEEeccC-CcccC-CCcHHHHHHHHHHh
Confidence            2235677765 44555 48999999876543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.70  E-value=8.9e-17  Score=131.48  Aligned_cols=94  Identities=21%  Similarity=0.203  Sum_probs=72.6

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----------  147 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----------  147 (189)
                      |+++|+++.|++. +  .+++|+||++.+|++++|+|+||||||||+++|+|+++   +++|++...+..          
T Consensus         1 l~~~~l~~~~~~~-~--~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~   74 (214)
T cd03292           1 IEFINVTKTYPNG-T--AALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAIP   74 (214)
T ss_pred             CEEEEEEEEeCCC-c--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHHH
Confidence            4789999999642 2  35779999999999999999999999999999999998   899987443321          


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                       .++...+++|+ ..+++ .+++.+|+.+....
T Consensus        75 ~~~~~i~~v~q~-~~~~~-~~t~~~~l~~~~~~  105 (214)
T cd03292          75 YLRRKIGVVFQD-FRLLP-DRNVYENVAFALEV  105 (214)
T ss_pred             HHHHheEEEecC-chhcc-CCcHHHHHHHHHHH
Confidence             12245677765 44555 38999999886543

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.70  E-value=8.7e-17  Score=134.16  Aligned_cols=93  Identities=17%  Similarity=0.218  Sum_probs=73.4

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ++|+++|+++.|++  +  .+++++||++.+||+++|+|+||||||||+++|+|+++   |++|++...+..        
T Consensus         1 ~~i~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~   73 (242)
T TIGR03411         1 PILYLEGLSVSFDG--F--KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQ   73 (242)
T ss_pred             CeEEEEeeEEEcCC--e--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHH
Confidence            36899999999975  2  35779999999999999999999999999999999998   899987443321        


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                       .+...++++|+ ..+++ .+++.+|+.+..
T Consensus        74 ~~~~~i~~~~q~-~~~~~-~~tv~~nl~~~~  102 (242)
T TIGR03411        74 IARAGIGRKFQK-PTVFE-NLTVFENLELAL  102 (242)
T ss_pred             HHhcCeeEeccc-cccCC-CCCHHHHHHHhh
Confidence             11235667765 45555 389999998754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.70  E-value=7.7e-17  Score=138.89  Aligned_cols=99  Identities=14%  Similarity=0.109  Sum_probs=75.2

Q ss_pred             eEEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ||+++|+++.|+.... ...+|+||||+|.+||+++|+|+||||||||+|+|+|+++   |++|++...+..        
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   77 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK   77 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            5899999999964211 1236789999999999999999999999999999999998   999987544321        


Q ss_pred             ----CCCeEEEEecCCC-CCCCCccChhhhHHHHHHHc
Q 029679          148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARR  180 (189)
Q Consensus       148 ----~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~~~  180 (189)
                          .++..++++|+.. .++.  .++.+|+.+.....
T Consensus        78 ~~~~~~~~ig~v~q~~~~~l~~--~tv~~~l~~~~~~~  113 (288)
T PRK13643         78 EIKPVRKKVGVVFQFPESQLFE--ETVLKDVAFGPQNF  113 (288)
T ss_pred             cHHHHHhhEEEEecCcchhccc--chHHHHHHhHHHHc
Confidence                1234677787632 3333  59999998876543

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.69  E-value=7.3e-17  Score=137.03  Aligned_cols=99  Identities=19%  Similarity=0.162  Sum_probs=73.8

Q ss_pred             eEEEeeeEEEcCccc-----eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----
Q 029679           77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----  147 (189)
                      +|+++|+++.|+...     ....+++|+||+|.+||+++|+|+||||||||+++|+|+++   +++|++...+..    
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~   78 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLYQL   78 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccc
Confidence            689999999996310     01246789999999999999999999999999999999998   899987443311    


Q ss_pred             -------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                             .++..++++|+....+...+++.+|+.+.+.
T Consensus        79 ~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~  116 (265)
T TIGR02769        79 DRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLR  116 (265)
T ss_pred             CHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHH
Confidence                   1234677787643222224789999876543

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.69  E-value=4.1e-17  Score=133.16  Aligned_cols=93  Identities=17%  Similarity=0.076  Sum_probs=70.3

Q ss_pred             EEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----CCCeEE
Q 029679           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDVAT  153 (189)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~~~~~~  153 (189)
                      +++|+++.|++.   ..+++++||++++||+++|+|+||||||||+++|+|+++   |++|.+...+..     .++..+
T Consensus         1 ~~~~l~~~~~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i~   74 (205)
T cd03226           1 RIENISFSYKKG---TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSIG   74 (205)
T ss_pred             CcccEEEEeCCc---CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcceE
Confidence            368999999652   135789999999999999999999999999999999998   899997543322     123456


Q ss_pred             EEecCCCCCCCCccChhhhHHHHHH
Q 029679          154 VLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       154 vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      +++|+....+. .+++.+|+.+...
T Consensus        75 ~~~q~~~~~~~-~~tv~e~l~~~~~   98 (205)
T cd03226          75 YVMQDVDYQLF-TDSVREELLLGLK   98 (205)
T ss_pred             EEecChhhhhh-hccHHHHHhhhhh
Confidence            77776322222 3699999987543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.69  E-value=1.1e-16  Score=134.32  Aligned_cols=98  Identities=16%  Similarity=0.117  Sum_probs=73.5

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK-----  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~-----  147 (189)
                      |++|+++|+++.|++  +  .+++|+||+|++||+++|+|+||||||||+++|+|++++.  .+++|++...+..     
T Consensus         1 ~~~l~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~   76 (250)
T PRK14247          1 MNKIEIRDLKVSFGQ--V--EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD   76 (250)
T ss_pred             CceEEEEeeEEEECC--e--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence            457999999999975  2  3577999999999999999999999999999999998621  1368886433211     


Q ss_pred             ---CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                         .+...++++|+ ..++. .+++.+|+.+...
T Consensus        77 ~~~~~~~i~~v~q~-~~~~~-~~tv~enl~~~~~  108 (250)
T PRK14247         77 VIELRRRVQMVFQI-PNPIP-NLSIFENVALGLK  108 (250)
T ss_pred             HHHHhccEEEEecc-CccCC-CCcHHHHHHHHHH
Confidence               12345677766 33344 3899999987653

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.69  E-value=9.4e-17  Score=131.47  Aligned_cols=100  Identities=16%  Similarity=0.104  Sum_probs=74.4

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC-------CCC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV-------KPP  149 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~-------~~~  149 (189)
                      .+.++|+++.|+.......+++++||++++||+++|+|+||||||||+++|+|++++..+++|.+...+.       ..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~   82 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP   82 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence            5889999999975322234678999999999999999999999999999999998632257887643221       123


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      +...+++|+ ...++ .+++.+|+.+...
T Consensus        83 ~~i~~~~q~-~~~~~-~~tv~~~l~~~~~  109 (202)
T cd03233          83 GEIIYVSEE-DVHFP-TLTVRETLDFALR  109 (202)
T ss_pred             ceEEEEecc-cccCC-CCcHHHHHhhhhh
Confidence            345677765 34444 3899999987653

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=1.4e-16  Score=136.46  Aligned_cols=97  Identities=15%  Similarity=0.126  Sum_probs=73.7

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      |.+|+++|+++.|+.. +  .+++||||+|++||+++|+|+||||||||+|+|+|+++   |++|++...+..       
T Consensus         1 ~~~l~~~~l~~~~~~~-~--~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~   74 (277)
T PRK13652          1 MHLIETRDLCYSYSGS-K--EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENIR   74 (277)
T ss_pred             CceEEEEEEEEEeCCC-C--ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence            3579999999999642 1  36789999999999999999999999999999999998   999987543321       


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                       .....++++|+....+. ..++.+|+.+...
T Consensus        75 ~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~  105 (277)
T PRK13652         75 EVRKFVGLVFQNPDDQIF-SPTVEQDIAFGPI  105 (277)
T ss_pred             HHHhheEEEecCcccccc-cccHHHHHHhHHH
Confidence             11245777776322222 3699999987543

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.69  E-value=9.8e-17  Score=133.88  Aligned_cols=92  Identities=20%  Similarity=0.263  Sum_probs=72.2

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------  147 (189)
                      +|+++|+++.|++  +  .+++|+||++.+||+++|+|+||||||||+++|+|+++   +++|++...+..         
T Consensus         1 ~l~~~~l~~~~~~--~--~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   73 (240)
T PRK09493          1 MIEFKNVSKHFGP--T--QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER   73 (240)
T ss_pred             CEEEEeEEEEECC--e--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence            4789999999975  2  35779999999999999999999999999999999998   899987443311         


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                       .++..++++|+ ..+++ .+++.+|+.+..
T Consensus        74 ~~~~~i~~~~q~-~~~~~-~~tv~~~l~~~~  102 (240)
T PRK09493         74 LIRQEAGMVFQQ-FYLFP-HLTALENVMFGP  102 (240)
T ss_pred             HHhhceEEEecc-cccCC-CCcHHHHHHhHH
Confidence             12245677765 44554 379999998753

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.69  E-value=1.1e-16  Score=134.19  Aligned_cols=93  Identities=13%  Similarity=0.168  Sum_probs=72.4

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCC-----ceeeccCCCC----
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVK----  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~-----~G~i~~~~~~----  147 (189)
                      +|+++|+++.|+.  .  .+++|+||+|++||+++|+|+||||||||+++|+|+++   |+     +|++...+..    
T Consensus         1 ~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~   73 (247)
T TIGR00972         1 AIEIENLNLFYGE--K--EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDK   73 (247)
T ss_pred             CEEEEEEEEEECC--e--eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEcccc
Confidence            4789999999975  2  35779999999999999999999999999999999998   76     8987433211    


Q ss_pred             ------CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                            .++..++++|+ ..++.  +++.+|+.+....
T Consensus        74 ~~~~~~~~~~i~~v~q~-~~~~~--~tv~e~l~~~~~~  108 (247)
T TIGR00972        74 KIDVVELRRRVGMVFQK-PNPFP--MSIYDNIAYGPRL  108 (247)
T ss_pred             ccchHHHHhheEEEecC-cccCC--CCHHHHHHhHHHh
Confidence                  12346777765 34443  7999999876543

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=1.2e-16  Score=137.26  Aligned_cols=97  Identities=13%  Similarity=0.142  Sum_probs=74.5

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ++|+++|+++.|+.. +  .++++|||+|++||+++|+|+||||||||+++|+|+++   +++|++...+..        
T Consensus         4 ~~l~~~~l~~~~~~~-~--~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~~   77 (283)
T PRK13636          4 YILKVEELNYNYSDG-T--HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKGL   77 (283)
T ss_pred             ceEEEEeEEEEeCCC-C--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcchH
Confidence            589999999999632 2  36789999999999999999999999999999999998   899987443321        


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                        .+...+|++|+....+. ..++.+|+.+....
T Consensus        78 ~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~  110 (283)
T PRK13636         78 MKLRESVGMVFQDPDNQLF-SASVYQDVSFGAVN  110 (283)
T ss_pred             HHHHhhEEEEecCcchhhc-cccHHHHHHhHHHH
Confidence              12346778876322222 26999999876543

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=1e-16  Score=144.73  Aligned_cols=101  Identities=17%  Similarity=0.235  Sum_probs=77.7

Q ss_pred             CeEEEeeeEEEcCccce--------------------eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccC
Q 029679           76 PVVEARCMDEVYDALAQ--------------------RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW  135 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~--------------------~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~  135 (189)
                      .+|+++||+|.|+...+                    ...+|+|+||+|++||+++|+|+||||||||+|+|+|+++   
T Consensus         3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---   79 (400)
T PRK10070          3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---   79 (400)
T ss_pred             cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---
Confidence            46899999999976311                    1236899999999999999999999999999999999998   


Q ss_pred             CCceeeccCCCC------------CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          136 PQKASSFDSQVK------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       136 p~~G~i~~~~~~------------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                      |++|++...+..            .++..+|++|+ ..+++ .+++.+|+.+.+...+
T Consensus        80 p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~-~~l~~-~~Tv~enl~~~~~~~~  135 (400)
T PRK10070         80 PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQS-FALMP-HMTVLDNTAFGMELAG  135 (400)
T ss_pred             CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECC-CcCCC-CCCHHHHHHHHHHhcC
Confidence            999987443311            02346777765 55665 4899999998765433

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=1.2e-16  Score=139.13  Aligned_cols=101  Identities=11%  Similarity=0.103  Sum_probs=75.0

Q ss_pred             eEEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC---------
Q 029679           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV---------  146 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~---------  146 (189)
                      +|+++|+++.|+.... ...+++||||+|.+||+++|+|+||||||||+++|+|+++   |++|++...+.         
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~~~~~~   78 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKNKKKTK   78 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceecccccccc
Confidence            4899999999975211 1246889999999999999999999999999999999998   88898643211         


Q ss_pred             -----------------------CCCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          147 -----------------------KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       147 -----------------------~~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                                             ..++..+|++|+....+. ..++.+|+.++....+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~  135 (305)
T PRK13651         79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMG  135 (305)
T ss_pred             cccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcC
Confidence                                   012346788876322222 2699999988765443

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.69  E-value=1.6e-16  Score=131.15  Aligned_cols=97  Identities=21%  Similarity=0.256  Sum_probs=73.0

Q ss_pred             eEEEeeeEEEcCcc---ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC--CC--C--
Q 029679           77 VVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS--QV--K--  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~---~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~--~~--~--  147 (189)
                      ||+++|+++.|+..   .+...+++|+||+|.+||+++|+|+||||||||+++|+|+++   +++|.+...  +.  .  
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~   77 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLA   77 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchh
Confidence            48999999999631   111346789999999999999999999999999999999998   888987432  21  1  


Q ss_pred             ----------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ----------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                                .....++++|+ ..+++ .+++.+|+.+.+.
T Consensus        78 ~~~~~~~~~~~~~~i~~~~q~-~~~~~-~~tv~e~l~~~~~  116 (224)
T TIGR02324        78 QASPREVLEVRRKTIGYVSQF-LRVIP-RVSALEVVAEPLL  116 (224)
T ss_pred             hcCHHHHHHHHhcceEEEecc-cccCC-CccHHHHHHHHHH
Confidence                      01235677766 44555 4899999887543

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.69  E-value=8.7e-17  Score=133.75  Aligned_cols=92  Identities=22%  Similarity=0.313  Sum_probs=70.8

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----C-----
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----P-----  148 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----~-----  148 (189)
                      |+++|+++.|++. +  .+++|+||++.+|++++|+|+||||||||+++|+|+++   +++|++...+..    .     
T Consensus         1 l~~~~l~~~~~~~-~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   74 (241)
T cd03256           1 IEVENLSKTYPNG-K--KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKALR   74 (241)
T ss_pred             CEEeeEEEecCCc-c--EEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHHH
Confidence            4789999999751 1  35779999999999999999999999999999999998   889987443211    0     


Q ss_pred             --CCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       149 --~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                        +...++++|+ ..+++ .+++.+|+.+..
T Consensus        75 ~~~~~i~~~~q~-~~~~~-~~tv~~~l~~~~  103 (241)
T cd03256          75 QLRRQIGMIFQQ-FNLIE-RLSVLENVLSGR  103 (241)
T ss_pred             HHHhccEEEccc-Ccccc-cCcHHHHHHhhh
Confidence              2235677765 44554 389999997653

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.69  E-value=1.1e-16  Score=130.12  Aligned_cols=93  Identities=20%  Similarity=0.173  Sum_probs=71.7

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CCC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PPD  150 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~~  150 (189)
                      |+++|+++.|+.  +  .+++++||++.+||+++|+|+||||||||+++|+|+++   |++|.+...+..       .++
T Consensus         1 l~~~~l~~~~~~--~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (198)
T TIGR01189         1 LAARNLACSRGE--R--MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR   73 (198)
T ss_pred             CEEEEEEEEECC--E--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence            478999999975  2  35789999999999999999999999999999999998   889987543321       123


Q ss_pred             eEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       151 ~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      ..++++++ ..+++ .+++.+|+.+....
T Consensus        74 ~i~~~~q~-~~~~~-~~tv~~~l~~~~~~  100 (198)
T TIGR01189        74 NILYLGHL-PGLKP-ELSALENLHFWAAI  100 (198)
T ss_pred             heEEeccC-ccccc-CCcHHHHHHHHHHH
Confidence            34566654 44444 38999999876543

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.69  E-value=1.3e-16  Score=133.43  Aligned_cols=94  Identities=17%  Similarity=0.205  Sum_probs=72.2

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP  149 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~  149 (189)
                      |+++|+++.|+.. +  .+++++||+|.+|++++|+|+||||||||+++|+|+++   +++|++...+..        .+
T Consensus         1 l~~~~l~~~~~~~-~--~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   74 (242)
T cd03295           1 IEFENVTKRYGGG-K--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVELR   74 (242)
T ss_pred             CEEEEEEEEeCCc-c--eEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHhh
Confidence            4789999999752 1  25779999999999999999999999999999999998   899987443321        12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      ....|++|+ ..+++ .+++.+|+.+....
T Consensus        75 ~~i~~~~q~-~~~~~-~~tv~e~l~~~~~~  102 (242)
T cd03295          75 RKIGYVIQQ-IGLFP-HMTVEENIALVPKL  102 (242)
T ss_pred             cceEEEccC-ccccC-CCcHHHHHHHHHHH
Confidence            345677765 44554 38999999876543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.69  E-value=7.4e-17  Score=131.25  Aligned_cols=90  Identities=13%  Similarity=0.129  Sum_probs=69.6

Q ss_pred             EeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------------
Q 029679           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------------  147 (189)
Q Consensus        80 ~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------------  147 (189)
                      ++|+++.|++  +  .+++|+||++++||+++|+|+||||||||+++|+|+++   |++|++...+..            
T Consensus         1 i~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~   73 (206)
T TIGR03608         1 LKNISKKFGD--K--IILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF   73 (206)
T ss_pred             CcceEEEECC--E--EEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence            4689999975  2  35779999999999999999999999999999999998   899987443321            


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      .++..++++++ ..+++ .+++.+|+.+...
T Consensus        74 ~~~~i~~~~q~-~~~~~-~~t~~e~~~~~~~  102 (206)
T TIGR03608        74 RREKLGYLFQN-FALIE-NETVEENLDLGLK  102 (206)
T ss_pred             HHhCeeEEecc-hhhcc-CCcHHHHHHHHHH
Confidence            12345667765 45555 3899999987543

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.69  E-value=4.9e-17  Score=133.25  Aligned_cols=91  Identities=16%  Similarity=0.156  Sum_probs=69.5

Q ss_pred             EEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---CCCeEEEE
Q 029679           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVATVL  155 (189)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---~~~~~~vv  155 (189)
                      +++|+++.|+.  +  .+++++||+|++||+++|+|+||||||||+++|+|+++   |++|.+...+..   .++..+++
T Consensus         1 ~~~~l~~~~~~--~--~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~i~~v   73 (213)
T cd03235           1 EVEDLTVSYGG--H--PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGYV   73 (213)
T ss_pred             CcccceeEECC--E--EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHhheEEe
Confidence            36899999975  2  35779999999999999999999999999999999998   899997544432   12345677


Q ss_pred             ecCCCC-CCCCccChhhhHHHHH
Q 029679          156 PMDGFH-LYLSQLDAMEDPKEAH  177 (189)
Q Consensus       156 ~~~~~~-l~~~~ltv~enl~~~~  177 (189)
                      +|+... ... .+++.+|+.+..
T Consensus        74 ~q~~~~~~~~-~~tv~e~l~~~~   95 (213)
T cd03235          74 PQRRSIDRDF-PISVRDVVLMGL   95 (213)
T ss_pred             ccccccccCC-CCcHHHHHHhcc
Confidence            766322 112 279999998754

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=1.1e-16  Score=138.14  Aligned_cols=98  Identities=12%  Similarity=0.064  Sum_probs=74.4

Q ss_pred             eEEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      .|+++|+++.|+.... ...+|+||||+|++||+++|+|+||||||||+|+|+|+++   |++|++...+..        
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK   78 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            4899999999964211 1246889999999999999999999999999999999998   899987443321        


Q ss_pred             ----CCCeEEEEecCCC-CCCCCccChhhhHHHHHHH
Q 029679          148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 ----~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~~  179 (189)
                          .++..+|++|+.. .++.  .++.+|+.+....
T Consensus        79 ~~~~~~~~ig~v~q~~~~~l~~--~tv~eni~~~~~~  113 (290)
T PRK13634         79 KLKPLRKKVGIVFQFPEHQLFE--ETVEKDICFGPMN  113 (290)
T ss_pred             hHHHHHhhEEEEeeCchhhhhh--hhHHHHHHHHHHH
Confidence                1234677887632 3332  6999999886543

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.69  E-value=1.2e-16  Score=134.35  Aligned_cols=93  Identities=18%  Similarity=0.235  Sum_probs=72.9

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ++|+++|+++.|++  +  .+++++||++.+|++++|+|+||||||||+++|+|+++   +++|++...+..        
T Consensus         4 ~~l~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   76 (255)
T PRK11300          4 PLLSVSGLMMRFGG--L--LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQ   76 (255)
T ss_pred             ceEEEeeEEEEECC--E--EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHH
Confidence            47999999999975  2  35779999999999999999999999999999999998   899987443321        


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                       .+....+++|+ ..++. .+++.+|+.+..
T Consensus        77 ~~~~~i~~~~q~-~~~~~-~~tv~enl~~~~  105 (255)
T PRK11300         77 IARMGVVRTFQH-VRLFR-EMTVIENLLVAQ  105 (255)
T ss_pred             HHhcCeEEeccC-cccCC-CCcHHHHHHHhh
Confidence             01224556765 44555 489999998754

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.68  E-value=1.4e-16  Score=130.43  Aligned_cols=92  Identities=18%  Similarity=0.224  Sum_probs=71.7

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC-------CC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------PD  150 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~-------~~  150 (189)
                      |+++|+++.|+.  +  .+++|+||++++| +++|+|+||||||||+++|+|+++   +++|++...+...       +.
T Consensus         1 i~~~~~~~~~~~--~--~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   72 (211)
T cd03264           1 LQLENLTKRYGK--K--RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR   72 (211)
T ss_pred             CEEEEEEEEECC--E--EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence            478999999965  2  3577999999999 999999999999999999999998   8999975443221       23


Q ss_pred             eEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       151 ~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      ..++++|+ ..++. .+++.+|+.+....
T Consensus        73 ~i~~~~q~-~~~~~-~~tv~~~l~~~~~~   99 (211)
T cd03264          73 RIGYLPQE-FGVYP-NFTVREFLDYIAWL   99 (211)
T ss_pred             heEEecCC-Ccccc-cCCHHHHHHHHHHH
Confidence            45677766 34554 37999999876543

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=1.3e-16  Score=135.83  Aligned_cols=98  Identities=11%  Similarity=0.074  Sum_probs=74.2

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------  148 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~------  148 (189)
                      .++|+++|+++.|+..  ...+++|+||+|++||+++|+|+||||||||+++|+|+++   +++|++...+...      
T Consensus         5 ~~~l~i~~l~~~~~~~--~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~   79 (269)
T PRK13648          5 NSIIVFKNVSFQYQSD--ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFE   79 (269)
T ss_pred             CceEEEEEEEEEcCCC--CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence            3579999999999752  1235789999999999999999999999999999999998   8999875443211      


Q ss_pred             --CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       149 --~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                        ++..++++|+....+.. .++.+|+.+...
T Consensus        80 ~~~~~i~~v~q~~~~~~~~-~~v~~~~~~~~~  110 (269)
T PRK13648         80 KLRKHIGIVFQNPDNQFVG-SIVKYDVAFGLE  110 (269)
T ss_pred             HHHhheeEEEeChHHhccc-ccHHHHHHhhHH
Confidence              23456777764323433 678888877643

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.68  E-value=1.4e-16  Score=135.67  Aligned_cols=100  Identities=15%  Similarity=0.146  Sum_probs=73.1

Q ss_pred             CeEEEeeeEEEcCccc-----eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---
Q 029679           76 PVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~-----~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---  147 (189)
                      ++|+++|+++.|+...     ....+++|+||+|++||+++|+|+||||||||+++|+|+++   |++|++...+..   
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~   79 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHF   79 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCC
Confidence            5799999999996310     01246789999999999999999999999999999999998   899987443211   


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                           .+...++++|+....+...+++.+|+.+...
T Consensus        80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~  115 (267)
T PRK15112         80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLR  115 (267)
T ss_pred             CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHH
Confidence                 1234567777643222224678888776543

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=1.3e-16  Score=135.91  Aligned_cols=95  Identities=18%  Similarity=0.156  Sum_probs=71.4

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------  147 (189)
                      ||+++|+++.|++  +  .+++++||+|.+||+++|+|+||||||||+|+|+|+++   |++|++...+..         
T Consensus         1 ml~~~~l~~~~~~--~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~   73 (271)
T PRK13638          1 MLATSDLWFRYQD--E--PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL   73 (271)
T ss_pred             CeEEEEEEEEcCC--c--ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence            5899999999975  2  35779999999999999999999999999999999998   899987443321         


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                       .+...++++|+....+. ..++.+|+.+.+..
T Consensus        74 ~~~~~i~~v~q~~~~~~~-~~~~~~~l~~~~~~  105 (271)
T PRK13638         74 ALRQQVATVFQDPEQQIF-YTDIDSDIAFSLRN  105 (271)
T ss_pred             HHHhheEEEeeChhhccc-cccHHHHHHHHHHH
Confidence             01345677766322222 25688888775443

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.68  E-value=2e-16  Score=133.67  Aligned_cols=94  Identities=17%  Similarity=0.265  Sum_probs=71.8

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------C
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------P  148 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~  148 (189)
                      ++|+++|+++.|++  +  .+++++||++.+||+++|+|+||||||||+++|+|+++   |++|++...+..       .
T Consensus         5 ~~l~~~~l~~~~~~--~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~~   77 (258)
T PRK11701          5 PLLSVRGLTKLYGP--R--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLYA   77 (258)
T ss_pred             ceEEEeeeEEEcCC--c--eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcccccccccc
Confidence            57999999999975  2  35779999999999999999999999999999999998   899987433321       0


Q ss_pred             ----------CCeEEEEecCCC-CCCCCccChhhhHHHHH
Q 029679          149 ----------PDVATVLPMDGF-HLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       149 ----------~~~~~vv~~~~~-~l~~~~ltv~enl~~~~  177 (189)
                                +...+|++|+.. .++. .+++.+|+.+..
T Consensus        78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~-~~~~~~~i~~~~  116 (258)
T PRK11701         78 LSEAERRRLLRTEWGFVHQHPRDGLRM-QVSAGGNIGERL  116 (258)
T ss_pred             CCHHHHHHHhhcceEEEeeCcccccCc-cccHHHHHHHHH
Confidence                      123677777643 2333 367788876543

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=1.1e-16  Score=135.86  Aligned_cols=93  Identities=17%  Similarity=0.120  Sum_probs=72.8

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      .++|+++|+++.|++  +  .+++|+||++++||+++|+|+||||||||+++|+|+++   +++|++...+..       
T Consensus         9 ~~~l~i~~l~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~   81 (265)
T PRK10575          9 DTTFALRNVSFRVPG--R--TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSK   81 (265)
T ss_pred             CceEEEeeEEEEECC--E--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHH
Confidence            357999999999975  2  35779999999999999999999999999999999998   899987443321       


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                       .+....+++|+ ...++ .+++.+|+.+.
T Consensus        82 ~~~~~i~~v~q~-~~~~~-~~tv~e~l~~~  109 (265)
T PRK10575         82 AFARKVAYLPQQ-LPAAE-GMTVRELVAIG  109 (265)
T ss_pred             HHhhheEEeccC-CCCCC-CccHHHHHHhC
Confidence             12345677765 33444 37999998764

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.68  E-value=9.9e-17  Score=144.86  Aligned_cols=94  Identities=19%  Similarity=0.343  Sum_probs=74.6

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      |++|+++|+++.|++  +  .+|+++||+|++||+++|+|+||||||||+|+|+|+++   |++|++...+..       
T Consensus         1 ~~~L~~~nls~~y~~--~--~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~   73 (402)
T PRK09536          1 MPMIDVSDLSVEFGD--T--TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR   73 (402)
T ss_pred             CceEEEeeEEEEECC--E--EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence            358999999999975  2  35789999999999999999999999999999999998   999987543321       


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                       .++..++++|+ ..++. .+++.+|+.+..
T Consensus        74 ~~~~~ig~v~q~-~~l~~-~~tv~e~v~~~~  102 (402)
T PRK09536         74 AASRRVASVPQD-TSLSF-EFDVRQVVEMGR  102 (402)
T ss_pred             HHhcceEEEccC-CCCCC-CCCHHHHHHhcc
Confidence             12346777766 44444 389999998754

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.68  E-value=8.9e-17  Score=131.39  Aligned_cols=94  Identities=15%  Similarity=0.141  Sum_probs=69.9

Q ss_pred             EEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CCC
Q 029679           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PPD  150 (189)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~~  150 (189)
                      +++|+++.|+...+  .+++++||++.+|++++|+|+||||||||+++|+|+++   +++|++...+..        .+.
T Consensus         1 ~~~~l~~~~~~~~~--~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~   75 (211)
T cd03225           1 ELKNLSFSYPDGAR--PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKELRR   75 (211)
T ss_pred             CceeEEEecCCCCe--eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHHHh
Confidence            36899999965211  35779999999999999999999999999999999998   899987443321        123


Q ss_pred             eEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       151 ~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      ..++++|+....+. .+++.+|+.+...
T Consensus        76 ~i~~~~q~~~~~~~-~~t~~~~l~~~~~  102 (211)
T cd03225          76 KVGLVFQNPDDQFF-GPTVEEEVAFGLE  102 (211)
T ss_pred             hceEEecChhhhcC-CCcHHHHHHHHHH
Confidence            45677776322233 3799999987543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=1.3e-16  Score=136.42  Aligned_cols=95  Identities=17%  Similarity=0.206  Sum_probs=72.6

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC--------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~--------  148 (189)
                      +|+++|+++.|+.. +  .+++||||+|++||+++|+|+||||||||+|+|+|+++   +++|++...+...        
T Consensus         1 ml~~~~l~~~~~~~-~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   74 (274)
T PRK13644          1 MIRLENVSYSYPDG-T--PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQG   74 (274)
T ss_pred             CEEEEEEEEEcCCC-C--ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHHH
Confidence            48899999999532 1  36779999999999999999999999999999999998   8999874433211        


Q ss_pred             -CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       149 -~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                       +...++++|+....+. ..++.+|+.+...
T Consensus        75 ~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~  104 (274)
T PRK13644         75 IRKLVGIVFQNPETQFV-GRTVEEDLAFGPE  104 (274)
T ss_pred             HHhheEEEEEChhhhcc-cchHHHHHHhhHH
Confidence             2335777776332233 2699999987653

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.68  E-value=1.8e-16  Score=127.64  Aligned_cols=89  Identities=24%  Similarity=0.250  Sum_probs=70.0

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ++|+++|+++.|        +++++||++++|++++|+|+||||||||+++|+|+++   +++|++...+..        
T Consensus         3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   71 (182)
T cd03215           3 PVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRD   71 (182)
T ss_pred             cEEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHH
Confidence            579999999988        4679999999999999999999999999999999998   899987443311        


Q ss_pred             -CCCeEEEEecCCC--CCCCCccChhhhHHHH
Q 029679          148 -PPDVATVLPMDGF--HLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 -~~~~~~vv~~~~~--~l~~~~ltv~enl~~~  176 (189)
                       .++...+++|+..  .+++ .+++.+|+.+.
T Consensus        72 ~~~~~i~~~~q~~~~~~~~~-~~t~~e~l~~~  102 (182)
T cd03215          72 AIRAGIAYVPEDRKREGLVL-DLSVAENIALS  102 (182)
T ss_pred             HHhCCeEEecCCcccCcccC-CCcHHHHHHHH
Confidence             1234567776532  2343 47999998764

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.68  E-value=1.6e-16  Score=134.10  Aligned_cols=92  Identities=17%  Similarity=0.232  Sum_probs=73.1

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      .+|+++|+++.|++  +  .+++|+||+|.+||+++|+|+||||||||+++|+|+++   +++|++...+..        
T Consensus         4 ~~l~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~   76 (257)
T PRK10619          4 NKLNVIDLHKRYGE--H--EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKD   76 (257)
T ss_pred             ccEEEeeeEEEECC--E--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccccccc
Confidence            46999999999975  2  35779999999999999999999999999999999998   889987433311        


Q ss_pred             -------------CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          148 -------------PPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 -------------~~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                                   .++..++++|+ ..++.. +++++|+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~i~~v~q~-~~l~~~-~sv~enl~~~  116 (257)
T PRK10619         77 GQLKVADKNQLRLLRTRLTMVFQH-FNLWSH-MTVLENVMEA  116 (257)
T ss_pred             cccccccchHHHHHhhceEEEecC-cccCCC-CcHHHHHHHH
Confidence                         02345777765 455553 8999999764

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.68  E-value=2.9e-16  Score=131.95  Aligned_cols=98  Identities=16%  Similarity=0.140  Sum_probs=73.4

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK-----  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~-----  147 (189)
                      .|+|+++|+++.|+.  +  .+++++||+|++||+++|+|+||||||||+|+|+|++...  .+++|++...+..     
T Consensus         4 ~~~l~~~~l~~~~~~--~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   79 (253)
T PRK14242          4 PPKMEARGLSFFYGD--F--QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH   79 (253)
T ss_pred             CcEEEEeeeEEEECC--e--eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence            468999999999975  2  3577999999999999999999999999999999997411  1468886433211     


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                           .+...++++|+ ..++.  .++.+|+.+....
T Consensus        80 ~~~~~~~~~i~~v~q~-~~~~~--~tv~enl~~~~~~  113 (253)
T PRK14242         80 VDVVELRRRVGMVFQK-PNPFP--KSIFENVAYGLRV  113 (253)
T ss_pred             cCHHHHhhcEEEEecC-CCCCc--CcHHHHHHHHHHH
Confidence                 12346777765 44554  4899999876543

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.68  E-value=1.5e-16  Score=134.80  Aligned_cols=92  Identities=21%  Similarity=0.250  Sum_probs=72.2

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      +|+++|+++.|++  +  .+++|+||+|.+|++++|+|+||||||||+++|+|+++   +++|++...+..        .
T Consensus         2 ~l~~~~l~~~~~~--~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~   74 (258)
T PRK13548          2 MLEARNLSVRLGG--R--TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL   74 (258)
T ss_pred             eEEEEeEEEEeCC--e--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence            6899999999975  2  35779999999999999999999999999999999998   899987543321        1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      ....++++|+ ..++. .+++.+|+.+..
T Consensus        75 ~~~i~~~~q~-~~~~~-~~tv~e~l~~~~  101 (258)
T PRK13548         75 ARRRAVLPQH-SSLSF-PFTVEEVVAMGR  101 (258)
T ss_pred             hhheEEEccC-CcCCC-CCCHHHHHHhhh
Confidence            2335677765 34434 379999988754

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.68  E-value=1.5e-16  Score=138.88  Aligned_cols=103  Identities=16%  Similarity=0.186  Sum_probs=79.9

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc--cCCCceee-ccCCC-------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-FDSQV-------  146 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~--~~p~~G~i-~~~~~-------  146 (189)
                      +|+++|++..|......+.+|+||||+|.+||++||||+|||||||++++|+||++.  ....+|++ +++..       
T Consensus         1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~   80 (316)
T COG0444           1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK   80 (316)
T ss_pred             CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence            478999999997643457899999999999999999999999999999999999962  23355665 43331       


Q ss_pred             ----CCCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          147 ----KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       147 ----~~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                          .+.+.+.++||+...-+.+.+++-+.+...+..
T Consensus        81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~  117 (316)
T COG0444          81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRL  117 (316)
T ss_pred             HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHH
Confidence                123456788888766666678888888877654

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=1.5e-16  Score=132.99  Aligned_cols=90  Identities=17%  Similarity=0.188  Sum_probs=71.2

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------  147 (189)
                      +|+++|+++.|+.  +  .+++|+||++.+||+++|+|+||||||||+|+|+|+++   +++|++...+..         
T Consensus         2 ~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   74 (242)
T PRK11124          2 SIQLNGINCFYGA--H--QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD   74 (242)
T ss_pred             EEEEEeeEEEECC--e--eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence            5899999999975  2  35779999999999999999999999999999999998   899987543321         


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHH
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~  175 (189)
                           .+...++++|+ ..+++ .+++.+|+.+
T Consensus        75 ~~~~~~~~~i~~~~q~-~~~~~-~~tv~e~i~~  105 (242)
T PRK11124         75 KAIRELRRNVGMVFQQ-YNLWP-HLTVQQNLIE  105 (242)
T ss_pred             hhHHHHHhheEEEecC-ccccC-CCcHHHHHHH
Confidence                 02235677765 44554 3799999864

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=1.7e-16  Score=135.97  Aligned_cols=100  Identities=14%  Similarity=0.166  Sum_probs=74.4

Q ss_pred             CeEEEeeeEEEcCccce--eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------
Q 029679           76 PVVEARCMDEVYDALAQ--RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~--~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------  147 (189)
                      ++|+++|+++.|+...+  ...+++||||+|.+||+++|+|+||||||||+++|+|+++   +++|.+...+..      
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~   79 (280)
T PRK13633          3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDEEN   79 (280)
T ss_pred             ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccc
Confidence            58999999999964211  1236789999999999999999999999999999999998   899987443211      


Q ss_pred             ---CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                         .++..++++|+....+. ..++.+|+.+....
T Consensus        80 ~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~  113 (280)
T PRK13633         80 LWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPEN  113 (280)
T ss_pred             HHHHhhheEEEecChhhhhc-cccHHHHHHhhHhh
Confidence               12346777876322222 25789999876543

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=1.3e-16  Score=137.20  Aligned_cols=98  Identities=10%  Similarity=0.083  Sum_probs=74.1

Q ss_pred             eEEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      .|+++|+++.|+.... ...+|+||||+|++||+++|+|+||||||||+|+|+|+++   +++|++...+..        
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK   78 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            4899999999964211 1246889999999999999999999999999999999998   999987443311        


Q ss_pred             ----CCCeEEEEecCCC-CCCCCccChhhhHHHHHHH
Q 029679          148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 ----~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~~  179 (189)
                          .++..++++|+.. .++.  .++.+|+.+....
T Consensus        79 ~~~~~~~~ig~v~q~~~~~l~~--~tv~e~i~~~~~~  113 (286)
T PRK13646         79 YIRPVRKRIGMVFQFPESQLFE--DTVEREIIFGPKN  113 (286)
T ss_pred             hHHHHHhheEEEecChHhccch--hhHHHHHHhhHHH
Confidence                1234677887632 3333  4899999886543

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.68  E-value=2.5e-16  Score=132.61  Aligned_cols=98  Identities=12%  Similarity=0.141  Sum_probs=73.1

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK-----  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~-----  147 (189)
                      .++|+++|+++.|++  +  .+++|+||+|++||+++|+|+||||||||+++|+|++++.  .+++|++...+..     
T Consensus         5 ~~~l~~~~l~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   80 (254)
T PRK14273          5 EAIIETENLNLFYTD--F--KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN   80 (254)
T ss_pred             CceEEEeeeEEEeCC--c--eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc
Confidence            358999999999975  2  2567999999999999999999999999999999999711  0247876432211     


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                           .++..+|++|+ ..++ . +++++|+.+....
T Consensus        81 ~~~~~~~~~i~~v~q~-~~~~-~-~tv~eni~~~~~~  114 (254)
T PRK14273         81 FDILELRRKIGMVFQT-PNPF-L-MSIYDNISYGPKI  114 (254)
T ss_pred             ccHHHHhhceEEEeec-cccc-c-CcHHHHHHHHHHh
Confidence                 12346777766 3444 3 7999999886543

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=1.4e-16  Score=136.76  Aligned_cols=98  Identities=12%  Similarity=0.129  Sum_probs=73.6

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCc---eeeccCCCC-----
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---ASSFDSQVK-----  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~---G~i~~~~~~-----  147 (189)
                      .+|+++|+++.|++..+  .++++|||+|.+||+++|+|+||||||||+++|+|++.   +++   |.+...+..     
T Consensus         4 ~~l~i~~l~~~~~~~~~--~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~   78 (282)
T PRK13640          4 NIVEFKHVSFTYPDSKK--PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKT   78 (282)
T ss_pred             ceEEEEEEEEEcCCCCc--cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCC
Confidence            47999999999964211  36789999999999999999999999999999999998   765   776433211     


Q ss_pred             ---CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                         .+...++++|+....+. .+++.+|+.+....
T Consensus        79 ~~~~~~~ig~v~q~~~~~~~-~~tv~enl~~~~~~  112 (282)
T PRK13640         79 VWDIREKVGIVFQNPDNQFV-GATVGDDVAFGLEN  112 (282)
T ss_pred             HHHHHhheEEEEECHHHhhc-cCCHHHHHHhhHHh
Confidence               12345777876332343 37999999876543

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.68  E-value=2.6e-16  Score=132.88  Aligned_cols=98  Identities=10%  Similarity=0.115  Sum_probs=73.4

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc--cCCCceeeccCCCC------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~--~~p~~G~i~~~~~~------  147 (189)
                      ++|+++|+++.|++  +  .+++++||+|.+||+++|+|+||||||||+++|+|++.+  ..|++|++...+..      
T Consensus         3 ~~l~i~~v~~~~~~--~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~   78 (258)
T PRK14241          3 KRIDVKDLNIYYGS--F--HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV   78 (258)
T ss_pred             ccEEEeeEEEEECC--E--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence            36999999999975  2  367899999999999999999999999999999999861  11268887433211      


Q ss_pred             ----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                          .++..++++|+ ..++. .+++.+|+.+....
T Consensus        79 ~~~~~~~~i~~~~q~-~~~~~-~~tv~~nl~~~~~~  112 (258)
T PRK14241         79 DPVAVRRTIGMVFQR-PNPFP-TMSIRDNVVAGLKL  112 (258)
T ss_pred             ChHHHhcceEEEccc-cccCC-CCcHHHHHHHHHHh
Confidence                12345677765 44554 37999999876543

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.68  E-value=1.4e-16  Score=133.91  Aligned_cols=90  Identities=18%  Similarity=0.196  Sum_probs=70.5

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----------  147 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----------  147 (189)
                      |+++|+++.|+.  +  .+++||||+|++||+++|+|+||||||||+|+|+|++.   +++|++...+..          
T Consensus         1 i~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~   73 (252)
T TIGR03005         1 VRFSDVTKRFGI--L--TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP   73 (252)
T ss_pred             CEEEEEEEEeCC--e--eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence            478999999975  2  35779999999999999999999999999999999998   889986433211          


Q ss_pred             -----------CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 -----------~~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                                 .++..++++|+ ..+++ .+++.+|+.+.
T Consensus        74 ~~~~~~~~~~~~~~~i~~v~q~-~~~~~-~~tv~~nl~~~  111 (252)
T TIGR03005        74 LVPADEKHLRQMRNKIGMVFQS-FNLFP-HKTVLDNVTEA  111 (252)
T ss_pred             ccccchhHHHHHhhCeEEEecC-cccCC-CCcHHHHHHHH
Confidence                       12345677765 45554 37999999875

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=2e-16  Score=135.38  Aligned_cols=98  Identities=11%  Similarity=0.050  Sum_probs=74.8

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ++|+++|+++.|+.. ....+++||||+|.+||+++|+|+||||||||+++|+|+++   +++|++...+..        
T Consensus         3 ~~l~~~~l~~~~~~~-~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~   78 (277)
T PRK13642          3 KILEVENLVFKYEKE-SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWN   78 (277)
T ss_pred             ceEEEEEEEEEcCCC-CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHH
Confidence            379999999999742 11236789999999999999999999999999999999998   999987443311        


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      .+...+|++|+....+. ..++.+|+.+...
T Consensus        79 ~~~~i~~v~q~~~~~~~-~~tv~eni~~~~~  108 (277)
T PRK13642         79 LRRKIGMVFQNPDNQFV-GATVEDDVAFGME  108 (277)
T ss_pred             HhcceEEEEECHHHhhc-cCCHHHHHHhhHH
Confidence            12346777876322333 3799999987643

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.68  E-value=2.1e-16  Score=136.05  Aligned_cols=97  Identities=14%  Similarity=0.151  Sum_probs=73.5

Q ss_pred             eEEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      +|+++|+++.|+.... ...+++||||+|.+||+++|+|+||||||||+++|+|+++   |++|++...+..        
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   78 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK   78 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            5899999999974210 1236789999999999999999999999999999999998   999987443321        


Q ss_pred             ----CCCeEEEEecCCC-CCCCCccChhhhHHHHHH
Q 029679          148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ----~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~  178 (189)
                          .+...++++|+.. .++ . +++.+|+.++..
T Consensus        79 ~~~~~~~~ig~v~q~~~~~~~-~-~tv~e~l~~~~~  112 (287)
T PRK13641         79 NLKKLRKKVSLVFQFPEAQLF-E-NTVLKDVEFGPK  112 (287)
T ss_pred             hHHHHHhceEEEEeChhhhhc-c-chHHHHHHHHHH
Confidence                0124577777632 233 2 799999987654

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.67  E-value=2.2e-16  Score=130.33  Aligned_cols=98  Identities=21%  Similarity=0.138  Sum_probs=74.5

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------  147 (189)
                      +|+++|+++.|+.......+++|+||++++|++++|+|+||||||||+++|+|+++   +++|++...+..         
T Consensus         1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (220)
T TIGR02982         1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKEL   77 (220)
T ss_pred             CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHH
Confidence            37899999999642111346789999999999999999999999999999999998   899987433221         


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                        .+...++++++ ..++. .+++.+|+.+....
T Consensus        78 ~~~~~~i~~~~q~-~~~~~-~~t~~~n~~~~~~~  109 (220)
T TIGR02982        78 VQLRRNIGYIFQA-HNLLG-FLTARQNVQMALEL  109 (220)
T ss_pred             HHHHhheEEEcCC-hhhcC-CCCHHHHHHHHHHh
Confidence              12345677765 45554 37999999876543

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=2.8e-16  Score=132.85  Aligned_cols=98  Identities=12%  Similarity=0.144  Sum_probs=73.3

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC----
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----  147 (189)
                      ..++|+++|+++.|+.  +  .+++|+||+|.+||+++|+|+||||||||+++|+|++++.  .+++|++...+..    
T Consensus         9 ~~~~l~~~~l~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~   84 (258)
T PRK14268          9 AQPQIKVENLNLWYGE--K--QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP   84 (258)
T ss_pred             cceeEEEeeeEEEeCC--e--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence            3468999999999975  2  2577999999999999999999999999999999998621  1268886432211    


Q ss_pred             ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                            .++..+|++|+ ..++.  +++.+|+.+...
T Consensus        85 ~~~~~~~~~~i~~v~q~-~~~~~--~tv~enl~~~~~  118 (258)
T PRK14268         85 DVDVVELRKNVGMVFQK-PNPFP--MSIYDNVAYGPR  118 (258)
T ss_pred             cchHHHHhhhEEEEecC-CccCc--ccHHHHHHHHHH
Confidence                  12345677765 44443  799999987653

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.67  E-value=2.5e-16  Score=133.17  Aligned_cols=102  Identities=15%  Similarity=0.119  Sum_probs=83.2

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ++++++++++.|++.   ..+++++||+|.+|+.++|+|+||||||||+++|+||+.   |++|.+...+..        
T Consensus         2 ~~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~~   75 (235)
T COG1122           2 RMIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSLL   75 (235)
T ss_pred             ceEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhHH
Confidence            579999999999774   346889999999999999999999999999999999999   999997433321        


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCCC
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV  184 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~~  184 (189)
                       .++..++++|+..+.+.. -+|.++++|+....+.+.
T Consensus        76 ~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~g~~~  112 (235)
T COG1122          76 ELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENLGLPR  112 (235)
T ss_pred             HhhcceEEEEECccccccc-CcHHHHHhhchhhcCCCH
Confidence             245577888776555443 699999999998877664

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.67  E-value=3.3e-16  Score=133.29  Aligned_cols=98  Identities=15%  Similarity=0.142  Sum_probs=73.7

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC----
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----  147 (189)
                      ..++|+++|+++.|+.  +  .+++||||++.+||+++|+|+||||||||+++|+|++++.  .+++|++...+..    
T Consensus        17 ~~~~l~~~nl~~~~~~--~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~   92 (267)
T PRK14237         17 EEIALSTKDLHVYYGK--K--EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK   92 (267)
T ss_pred             CCeEEEEeeEEEEECC--e--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence            3458999999999965  2  3577999999999999999999999999999999998521  1478886433211    


Q ss_pred             ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                            .+...++++|+ ..++.  .++.+|+.++..
T Consensus        93 ~~~~~~~~~~i~~v~q~-~~~~~--~tv~eni~~~~~  126 (267)
T PRK14237         93 EINVYEMRKHIGMVFQR-PNPFA--KSIYENITFALE  126 (267)
T ss_pred             cCChHHHhcceEEEecC-Ccccc--ccHHHHHHhHHH
Confidence                  12345777765 44443  589999988654

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.67  E-value=8.6e-17  Score=137.75  Aligned_cols=68  Identities=18%  Similarity=0.313  Sum_probs=59.4

Q ss_pred             CCeEEEeeeEEEcCcc----ce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCC
Q 029679           75 IPVVEARCMDEVYDAL----AQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ  145 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~----~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~  145 (189)
                      +++++++|+++.|...    .. .+.||+||||+|.+||++||||+||||||||.|+|+||++   |++|+++..+
T Consensus         2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~i~f~g   74 (268)
T COG4608           2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTSGEILFEG   74 (268)
T ss_pred             CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCCceEEEcC
Confidence            4689999999999542    11 3689999999999999999999999999999999999999   9999975443

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=3.2e-16  Score=137.37  Aligned_cols=100  Identities=14%  Similarity=0.143  Sum_probs=75.8

Q ss_pred             CCCeEEEeeeEEEcCccc-eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----
Q 029679           74 EIPVVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----  147 (189)
                      ..++|+++|+++.|+... ....+|+||||+|++||+++|+|+||||||||+++|+|+++   +++|++...+..     
T Consensus        18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~~~   94 (320)
T PRK13631         18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGDKK   94 (320)
T ss_pred             CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEccccc
Confidence            446899999999996421 11246889999999999999999999999999999999998   899987443210     


Q ss_pred             -------------------CCCeEEEEecCC-CCCCCCccChhhhHHHHHH
Q 029679          148 -------------------PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -------------------~~~~~~vv~~~~-~~l~~~~ltv~enl~~~~~  178 (189)
                                         .++..++++|+. ..++.  .++.+|+.++..
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~--~tv~eni~~~~~  143 (320)
T PRK13631         95 NNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK--DTIEKDIMFGPV  143 (320)
T ss_pred             ccccccccccccccchHHHHHhcEEEEEECchhcccc--chHHHHHHhhHH
Confidence                               123467777763 23443  589999987653

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=3e-16  Score=131.63  Aligned_cols=96  Identities=14%  Similarity=0.235  Sum_probs=72.3

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~------  147 (189)
                      ++|+++|+++.|+.  +  .+++++||++++||+++|+|+||||||||+++|+|++++.  .+++|++...+..      
T Consensus         2 ~~l~~~~l~~~~~~--~--~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~   77 (250)
T PRK14262          2 PIIEIENFSAYYGE--K--KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL   77 (250)
T ss_pred             ceEEEEeeEEEeCC--c--eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh
Confidence            57999999999975  2  3577999999999999999999999999999999998621  1378886433211      


Q ss_pred             ----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                          .+...++++|+ ..++.  +++++|+.+...
T Consensus        78 ~~~~~~~~i~~~~q~-~~~~~--~tv~e~l~~~~~  109 (250)
T PRK14262         78 DVTEYRKKVGMVFQK-PTPFP--MSIYDNVAFGPR  109 (250)
T ss_pred             hHHHhhhhEEEEecC-CccCc--ccHHHHHHHHHH
Confidence                12346677765 33443  699999987653

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.67  E-value=1.9e-16  Score=129.36  Aligned_cols=90  Identities=18%  Similarity=0.118  Sum_probs=69.6

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CCC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PPD  150 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~~  150 (189)
                      |+++|+++.|+.  +  ..++++||+|++||+++|+|+||||||||+++|+|+++   +++|++...+..       .+.
T Consensus         1 l~i~~l~~~~~~--~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (201)
T cd03231           1 LEADELTCERDG--R--ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR   73 (201)
T ss_pred             CEEEEEEEEeCC--c--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence            478999999975  2  35779999999999999999999999999999999998   889987433211       122


Q ss_pred             eEEEEecCCCCCCCCccChhhhHHHH
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       151 ~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ..++++|+ ..++. .+++.+|+.+.
T Consensus        74 ~i~~~~q~-~~~~~-~~tv~e~l~~~   97 (201)
T cd03231          74 GLLYLGHA-PGIKT-TLSVLENLRFW   97 (201)
T ss_pred             heEEeccc-cccCC-CcCHHHHHHhh
Confidence            35566654 44444 37999998764

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.67  E-value=3.3e-16  Score=132.54  Aligned_cols=97  Identities=11%  Similarity=0.114  Sum_probs=73.1

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc--ccCCCceeeccCCCC-----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVK-----  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~--~~~p~~G~i~~~~~~-----  147 (189)
                      ..+|+++|+++.|+.  +  .+++|+||+|++||+++|+|+||||||||+++|+|++.  +..+++|++...+..     
T Consensus        11 ~~~l~~~~l~~~~~~--~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~   86 (260)
T PRK10744         11 PSKIQVRNLNFYYGK--F--HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK   86 (260)
T ss_pred             CceEEEEEEEEEeCC--e--EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence            457999999999975  2  35779999999999999999999999999999999985  222578886433211     


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                           .++..++++|+ ..++.  +++.+|+.+...
T Consensus        87 ~~~~~~~~~i~~~~q~-~~~~~--~tv~~nl~~~~~  119 (260)
T PRK10744         87 QDIALLRAKVGMVFQK-PTPFP--MSIYDNIAFGVR  119 (260)
T ss_pred             cchHHHhcceEEEecC-CccCc--CcHHHHHhhhHh
Confidence                 12346677766 34443  699999987643

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.67  E-value=2.2e-16  Score=149.06  Aligned_cols=102  Identities=13%  Similarity=0.136  Sum_probs=76.8

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC-------
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV-------  146 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~-------  146 (189)
                      .+++|+++|+++.|+.......+++||||+|.+||++||+|+||||||||+|+|+|+++   +++|.+..++.       
T Consensus         9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~   85 (623)
T PRK10261          9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSR   85 (623)
T ss_pred             CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEeccccc
Confidence            45689999999999642122347889999999999999999999999999999999998   88888642211       


Q ss_pred             --------C-------CCCeEEEEecCCC-CCCCCccChhhhHHHHHHH
Q 029679          147 --------K-------PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       147 --------~-------~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~~  179 (189)
                              .       +....++++|+.. .+++ .+++.+|+.+.+..
T Consensus        86 ~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~-~~tv~e~l~~~~~~  133 (623)
T PRK10261         86 QVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNP-VFTVGEQIAESIRL  133 (623)
T ss_pred             cccccccCCHHHHHHHhCCCEEEEEeCchhhcCC-CCCHHHHHHHHHHH
Confidence                    0       1123577787632 3444 48999999987643

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.67  E-value=3.4e-16  Score=129.28  Aligned_cols=93  Identities=24%  Similarity=0.274  Sum_probs=71.8

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----CCCeEE
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----PPDVAT  153 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----~~~~~~  153 (189)
                      |+++|+++.|+.  +  .+++++||++++||+++|+|+||||||||+++|+|+++   +++|.+...+..    ..+..+
T Consensus         1 l~l~~v~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~~~~~~   73 (223)
T TIGR03740         1 LETKNLSKRFGK--Q--TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKDLHKIG   73 (223)
T ss_pred             CEEEeEEEEECC--E--EEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccccccEE
Confidence            478999999975  2  35779999999999999999999999999999999998   899987543321    123456


Q ss_pred             EEecCCCCCCCCccChhhhHHHHHHH
Q 029679          154 VLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       154 vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      +++++ ..++. .+++.+|+.+....
T Consensus        74 ~~~q~-~~~~~-~~t~~~~~~~~~~~   97 (223)
T TIGR03740        74 SLIES-PPLYE-NLTARENLKVHTTL   97 (223)
T ss_pred             EEcCC-CCccc-cCCHHHHHHHHHHH
Confidence            66765 34444 37999999876543

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.67  E-value=2.1e-16  Score=135.13  Aligned_cols=94  Identities=18%  Similarity=0.172  Sum_probs=71.8

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------  147 (189)
                      +|+++|+++.|+.. +  .+++||||+|++||+++|+|+||||||||+|+|+|+++   +++|++...+..         
T Consensus         1 ~l~~~~l~~~~~~~-~--~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (275)
T PRK13639          1 ILETRDLKYSYPDG-T--EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSLL   74 (275)
T ss_pred             CEEEEEEEEEeCCC-C--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchHH
Confidence            48899999999632 2  25779999999999999999999999999999999998   889987443311         


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                       .+...++++|+....+.. .++.+|+.+..
T Consensus        75 ~~~~~i~~v~q~~~~~~~~-~tv~e~i~~~~  104 (275)
T PRK13639         75 EVRKTVGIVFQNPDDQLFA-PTVEEDVAFGP  104 (275)
T ss_pred             HHHhheEEEeeChhhhhcc-ccHHHHHHHHH
Confidence             123467778763222222 68999998754

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=3.9e-16  Score=131.89  Aligned_cols=99  Identities=11%  Similarity=0.076  Sum_probs=73.4

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc--cCCCceeeccCCCC----
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK----  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~--~~p~~G~i~~~~~~----  147 (189)
                      ..++|+++|+++.|+.  +  .+++|+||+|.+||+++|+|+||||||||+++|+|++.+  ..+++|++...+..    
T Consensus         9 ~~~~l~i~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~   84 (259)
T PRK14274          9 KQEVYQINGMNLWYGQ--H--HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKG   84 (259)
T ss_pred             CCceEEEeeEEEEECC--e--eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEcccc
Confidence            4568999999999975  2  357799999999999999999999999999999999851  11257886433211    


Q ss_pred             ------CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                            .+...++++|+ ..++.  .++++|+.+....
T Consensus        85 ~~~~~~~~~~i~~v~q~-~~~~~--~tv~enl~~~~~~  119 (259)
T PRK14274         85 KVDLVELRKNIGMVFQK-GNPFP--QSIFDNVAYGPRI  119 (259)
T ss_pred             ccCHHHHhhceEEEecC-Ccccc--cCHHHHHHhHHHh
Confidence                  12346777766 34444  4899999876543

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=2e-16  Score=132.53  Aligned_cols=92  Identities=20%  Similarity=0.172  Sum_probs=71.9

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      .+|+++|+++.|++  +  ..++|+||+|.+|++++|+|+||||||||+++|+|+++   |++|++...+..        
T Consensus         2 ~~l~~~~l~~~~~~--~--~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   74 (241)
T PRK14250          2 NEIEFKEVSYSSFG--K--EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVID   74 (241)
T ss_pred             ceEEEEeEEEEeCC--e--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChHH
Confidence            46899999999965  2  25779999999999999999999999999999999998   899987443311        


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      .+...++++|+ ..++.  .++.+|+.+..
T Consensus        75 ~~~~i~~~~q~-~~~~~--~tv~e~l~~~~  101 (241)
T PRK14250         75 LRRKIGMVFQQ-PHLFE--GTVKDNIEYGP  101 (241)
T ss_pred             hhhcEEEEecC-chhch--hhHHHHHhcch
Confidence            12345677776 44443  58999987643

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.67  E-value=5.1e-16  Score=130.58  Aligned_cols=97  Identities=9%  Similarity=0.115  Sum_probs=72.4

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc--ccCCCceeeccCCCC------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVK------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~--~~~p~~G~i~~~~~~------  147 (189)
                      ..|+++|+++.|+.  +  .+++|+||+|++||+++|+|+||||||||+++|+|+++  +..+++|++...+..      
T Consensus         3 ~~l~~~nl~~~~~~--~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~   78 (252)
T PRK14256          3 NKVKLEQLNVHFGK--N--HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV   78 (252)
T ss_pred             cEEEEEEEEEEeCC--e--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence            36899999999975  2  35779999999999999999999999999999999984  111357876433211      


Q ss_pred             ----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                          .++..++++|+ ..++. .+++.+|+.+...
T Consensus        79 ~~~~~~~~i~~~~q~-~~~~~-~~tv~enl~~~~~  111 (252)
T PRK14256         79 DPVSIRRRVGMVFQK-PNPFP-AMSIYDNVIAGYK  111 (252)
T ss_pred             ChHHhhccEEEEecC-CCCCC-cCcHHHHHHhHHH
Confidence                12346677766 44554 3799999987544

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.66  E-value=4.6e-16  Score=132.43  Aligned_cols=98  Identities=14%  Similarity=0.094  Sum_probs=73.6

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC----
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----  147 (189)
                      .+++|+++|+++.|++  +  .+++|+||+|++|++++|+|+||||||||+|+|+|++++.  .+++|++...+..    
T Consensus        16 ~~~~l~~~nl~~~~~~--~--~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~   91 (267)
T PRK14235         16 TEIKMRARDVSVFYGE--K--QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDP   91 (267)
T ss_pred             CCceEEEEeEEEEECC--E--EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccc
Confidence            3468999999999975  2  3577999999999999999999999999999999998610  1378887433211    


Q ss_pred             ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                            .+...++++|+ ..++.  .++.+|+.+...
T Consensus        92 ~~~~~~~~~~i~~v~q~-~~~~~--~tv~enl~~~~~  125 (267)
T PRK14235         92 RLDVVELRARVGMVFQK-PNPFP--KSIYENVAYGPR  125 (267)
T ss_pred             ccchHHHhhceEEEecC-CCCCC--CcHHHHHHHHHH
Confidence                  12345677765 44454  489999987654

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=4.4e-16  Score=130.87  Aligned_cols=98  Identities=13%  Similarity=0.124  Sum_probs=73.3

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK-----  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~-----  147 (189)
                      .++|+++|+++.|+.  +  .+++|+||+|.+||+++|+|+||||||||+++|+|+.++.  .+++|++...+..     
T Consensus         2 ~~~l~~~~l~~~~~~--~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~   77 (251)
T PRK14270          2 KIKMESKNLNLWYGE--K--QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD   77 (251)
T ss_pred             ccEEEEEEeEEEECC--e--eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc
Confidence            368999999999975  2  3577999999999999999999999999999999998621  1267886433211     


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                           .+...++++|+ ..++.  +++.+|+.+....
T Consensus        78 ~~~~~~~~~i~~~~q~-~~~~~--~tv~enl~~~~~~  111 (251)
T PRK14270         78 VDVVELRKRVGMVFQK-PNPFP--MSIYDNVAYGPRI  111 (251)
T ss_pred             ccHHHHHhheEEEecC-CCcCC--CcHHHHHHhHHHh
Confidence                 12346777866 34443  7999999876543

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.66  E-value=2.1e-16  Score=128.86  Aligned_cols=88  Identities=15%  Similarity=0.144  Sum_probs=69.5

Q ss_pred             EEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEe
Q 029679           78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (189)
Q Consensus        78 l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~  156 (189)
                      |+++|+++.|+.... ...+++++||+|++|++++|+|+||||||||+++|+|+++   +++|++...+     ..++++
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g-----~i~~~~   72 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG-----SIAYVS   72 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC-----EEEEEe
Confidence            478999999975310 0136789999999999999999999999999999999998   9999975443     456777


Q ss_pred             cCCCCCCCCccChhhhHHHH
Q 029679          157 MDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       157 ~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++ ..++.  .++.+|+.+.
T Consensus        73 q~-~~l~~--~t~~enl~~~   89 (204)
T cd03250          73 QE-PWIQN--GTIRENILFG   89 (204)
T ss_pred             cC-chhcc--CcHHHHhccC
Confidence            66 34442  6899888764

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.66  E-value=2.9e-16  Score=132.85  Aligned_cols=96  Identities=18%  Similarity=0.198  Sum_probs=72.0

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC-------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------  148 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~-------  148 (189)
                      ++|+++|+++.|++  +  .+++++||++.+||+++|+|+||||||||+++|+|++++..+++|++...+...       
T Consensus         3 ~~l~~~nl~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~   78 (262)
T PRK09984          3 TIIRVEKLAKTFNQ--H--QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA   78 (262)
T ss_pred             cEEEEeeEEEEeCC--e--EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccc
Confidence            58999999999975  2  357799999999999999999999999999999999972112347764332110       


Q ss_pred             ------CCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       149 ------~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                            +...++++|+ ..+++ .+++.+|+.+..
T Consensus        79 ~~~~~~~~~i~~~~q~-~~~~~-~~tv~e~l~~~~  111 (262)
T PRK09984         79 RDIRKSRANTGYIFQQ-FNLVN-RLSVLENVLIGA  111 (262)
T ss_pred             hhHHHHHhheEEEccc-ccccc-CCcHHHHHHhhh
Confidence                  1235677765 45555 489999998653

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.66  E-value=2.6e-16  Score=131.09  Aligned_cols=92  Identities=13%  Similarity=0.075  Sum_probs=69.6

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh--cccCCCceeeccCCCC--------
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~--~~~~p~~G~i~~~~~~--------  147 (189)
                      |+++|+++.|++  +  .+++|+||+|++||+++|+|+||||||||+|+|+|++  +   +++|++...+..        
T Consensus         1 l~~~~l~~~~~~--~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~~   73 (243)
T TIGR01978         1 LKIKDLHVSVED--K--EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPDE   73 (243)
T ss_pred             CeEeeEEEEECC--E--EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHHH
Confidence            478999999975  2  3577999999999999999999999999999999995  5   788987443321        


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                       .+...++++|+ ..+++ .+++.+|+.+.+.
T Consensus        74 ~~~~~i~~v~q~-~~~~~-~~t~~~~~~~~~~  103 (243)
T TIGR01978        74 RARAGLFLAFQY-PEEIP-GVSNLEFLRSALN  103 (243)
T ss_pred             hhccceEeeecc-ccccC-CcCHHHHHHHHHH
Confidence             01124566655 44554 4889999877543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.66  E-value=3.9e-16  Score=131.18  Aligned_cols=92  Identities=16%  Similarity=0.242  Sum_probs=69.6

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ++|+++|+++.|+..    .+++|+||+|++|++++|+|+||||||||+++|+|+++   +++|++...+..        
T Consensus         2 ~~l~~~~l~~~~~~~----~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   74 (253)
T TIGR02323         2 PLLQVSGLSKSYGGG----KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ   74 (253)
T ss_pred             ceEEEeeeEEEeCCc----eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence            479999999999752    24679999999999999999999999999999999998   889987433211        


Q ss_pred             -C--------CCeEEEEecCCC-CCCCCccChhhhHHH
Q 029679          148 -P--------PDVATVLPMDGF-HLYLSQLDAMEDPKE  175 (189)
Q Consensus       148 -~--------~~~~~vv~~~~~-~l~~~~ltv~enl~~  175 (189)
                       .        ++..++++|+.. .++. .+++.+|+.+
T Consensus        75 ~~~~~~~~~~~~~i~~~~q~~~~~~~~-~~~~~~~i~~  111 (253)
T TIGR02323        75 LSEAERRRLMRTEWGFVHQNPRDGLRM-RVSAGANIGE  111 (253)
T ss_pred             CCHHHHHHhhhcceEEEEeCcccccCc-cccHHHHHHH
Confidence             0        123567777643 2333 3677777754

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.66  E-value=4.7e-16  Score=126.31  Aligned_cols=91  Identities=15%  Similarity=0.185  Sum_probs=69.2

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC----CCeE
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----PDVA  152 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~----~~~~  152 (189)
                      +|+++|+++.|+.  +.   +.++||++++||+++|+|+||||||||+++|+|+++   +++|.+...+...    .+..
T Consensus         1 ~l~~~~l~~~~~~--~~---l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~   72 (195)
T PRK13541          1 MLSLHQLQFNIEQ--KN---LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYC   72 (195)
T ss_pred             CeEEEEeeEEECC--cE---EEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhE
Confidence            4789999999965  22   235999999999999999999999999999999998   8999875443221    2234


Q ss_pred             EEEecCCCCCCCCccChhhhHHHHH
Q 029679          153 TVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       153 ~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      .+++++ ...+. .+++.+|+.+..
T Consensus        73 ~~~~~~-~~~~~-~~tv~~~l~~~~   95 (195)
T PRK13541         73 TYIGHN-LGLKL-EMTVFENLKFWS   95 (195)
T ss_pred             EeccCC-cCCCc-cCCHHHHHHHHH
Confidence            566654 33333 389999998754

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=3.5e-16  Score=131.28  Aligned_cols=95  Identities=15%  Similarity=0.130  Sum_probs=72.8

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      +++++|+++.|+.  +  ..++|+||++.+||+++|+|+||||||||+++|+|++++..+++|++...+..        .
T Consensus         2 ~~~~~~l~~~~~~--~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~   77 (246)
T PRK14269          2 IAKTTNLNLFYGK--K--QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL   77 (246)
T ss_pred             ceeeeeeEEEECC--E--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence            5889999999975  2  35779999999999999999999999999999999985333688887443311        1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      +...+|++|+ ..++.  .++.+|+.+...
T Consensus        78 ~~~i~~~~q~-~~l~~--~tv~eni~~~~~  104 (246)
T PRK14269         78 RKNVGMVFQQ-PNVFV--KSIYENISYAPK  104 (246)
T ss_pred             hhhEEEEecC-Ccccc--ccHHHHhhhHHh
Confidence            2345777766 44554  599999987643

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.66  E-value=4.7e-16  Score=130.49  Aligned_cols=97  Identities=16%  Similarity=0.181  Sum_probs=71.8

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh--cccCCCceeeccCCCC------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVK------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~--~~~~p~~G~i~~~~~~------  147 (189)
                      ++|+++|+++.|+.  +  .+++++||+|.+||+++|+|+||||||||+++|+|+.  .+..+++|++...+..      
T Consensus         4 ~~l~~~~l~~~~~~--~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~   79 (252)
T PRK14239          4 PILQVSDLSVYYNK--K--KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT   79 (252)
T ss_pred             ceEEEEeeEEEECC--e--eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence            57999999999975  2  3577999999999999999999999999999999985  3111247886433211      


Q ss_pred             ----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                          .+...++++|+ ..++.  +++.+|+.+....
T Consensus        80 ~~~~~~~~i~~v~q~-~~~~~--~tv~enl~~~~~~  112 (252)
T PRK14239         80 DTVDLRKEIGMVFQQ-PNPFP--MSIYENVVYGLRL  112 (252)
T ss_pred             chHhhhhcEEEEecC-CccCc--CcHHHHHHHHHHH
Confidence                12346777766 34443  6999999876543

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.66  E-value=3.5e-16  Score=133.31  Aligned_cols=99  Identities=17%  Similarity=0.124  Sum_probs=72.8

Q ss_pred             CCeEEEeeeEEEcCcc-----ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--
Q 029679           75 IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~-----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--  147 (189)
                      |++|+++|+++.|+..     .....+++|+||+|.+||+++|+|+||||||||+++|+|+++   +++|++...+..  
T Consensus         1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g~~~~   77 (268)
T PRK10419          1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRGEPLA   77 (268)
T ss_pred             CceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecc
Confidence            4579999999999731     001235789999999999999999999999999999999998   889987443321  


Q ss_pred             ---------CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 ---------~~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                               .++..++++|+....+....++.+|+.+.
T Consensus        78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~  115 (268)
T PRK10419         78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREP  115 (268)
T ss_pred             ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHH
Confidence                     12346777776432232247888887654

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.66  E-value=2.8e-16  Score=141.11  Aligned_cols=83  Identities=18%  Similarity=0.166  Sum_probs=66.2

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC----C------------CCCeEEEEec
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV----K------------PPDVATVLPM  157 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~----~------------~~~~~~vv~~  157 (189)
                      ..+|+|+||+|++||+++|+|+||||||||+|+|+|+++   |++|++...+.    .            +++..+|++|
T Consensus        37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ  113 (382)
T TIGR03415        37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQ  113 (382)
T ss_pred             EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEEC
Confidence            457899999999999999999999999999999999998   99999744321    1            1134677776


Q ss_pred             CCCCCCCCccChhhhHHHHHHHcC
Q 029679          158 DGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       158 ~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                      + +.+++ .+|+.+|+.+++...+
T Consensus       114 ~-~~l~p-~~Tv~eNi~~~~~~~g  135 (382)
T TIGR03415       114 K-FALMP-WLTVEENVAFGLEMQG  135 (382)
T ss_pred             C-CcCCC-CCcHHHHHHHHHHhcC
Confidence            5 66776 4899999998865443

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=2.7e-16  Score=132.57  Aligned_cols=91  Identities=21%  Similarity=0.229  Sum_probs=71.5

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      +|+++|+++.|++  +  .+++++||++.+|++++|+|+||||||||+++|+|+++   +++|++...+..        .
T Consensus         2 ~l~~~~l~~~~~~--~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (255)
T PRK11231          2 TLRTENLTVGYGT--K--RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL   74 (255)
T ss_pred             EEEEEeEEEEECC--E--EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence            6899999999975  2  35779999999999999999999999999999999998   889987443321        1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      +...++++|+. .++. .+++.+|+.++
T Consensus        75 ~~~i~~~~q~~-~~~~-~~tv~~~i~~~  100 (255)
T PRK11231         75 ARRLALLPQHH-LTPE-GITVRELVAYG  100 (255)
T ss_pred             hhheEEecccC-CCCC-CccHHHHHHhc
Confidence            22356777663 3444 37899998764

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.66  E-value=6.8e-16  Score=131.72  Aligned_cols=98  Identities=10%  Similarity=0.146  Sum_probs=73.8

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc--ccCCCceeeccCCCC----
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVK----  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~--~~~p~~G~i~~~~~~----  147 (189)
                      ..++|+++|+++.|+.  +  .+++|+||+|.+||+++|+|+||||||||+++|+|++.  +..+++|++...+..    
T Consensus        21 ~~~~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~   96 (271)
T PRK14238         21 KKVVFDTQNLNLWYGE--D--HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK   96 (271)
T ss_pred             CceEEEEeeeEEEECC--c--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccc
Confidence            3458999999999975  2  35779999999999999999999999999999999985  222578886433211    


Q ss_pred             ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                            .++..+|++|+ ..++.  .++.+|+.+...
T Consensus        97 ~~~~~~~~~~i~~v~q~-~~~~~--~tv~eni~~~~~  130 (271)
T PRK14238         97 SYSVEELRTNVGMVFQK-PNPFP--KSIYDNVTYGPK  130 (271)
T ss_pred             cccHHHHhhhEEEEecC-Ccccc--ccHHHHHHHHHH
Confidence                  12346677766 44443  489999987653

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.66  E-value=4.6e-16  Score=126.32  Aligned_cols=98  Identities=13%  Similarity=0.042  Sum_probs=71.6

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----CCCeE
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----PPDVA  152 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----~~~~~  152 (189)
                      +|+++|+++.|+.......+++++||++++||+++|+|+||||||||+++|+|+.. ..+++|++...+..    .++..
T Consensus         3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~~~G~i~~~g~~~~~~~~~~i   81 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT-AGVITGEILINGRPLDKNFQRST   81 (192)
T ss_pred             EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCcceEEEECCEehHHHhhhce
Confidence            68999999999642111135789999999999999999999999999999999862 11678886443321    12345


Q ss_pred             EEEecCCCCCCCCccChhhhHHHHH
Q 029679          153 TVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       153 ~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      .+++|+ ...++ .+++.+|+.+..
T Consensus        82 ~~~~q~-~~~~~-~~tv~~~l~~~~  104 (192)
T cd03232          82 GYVEQQ-DVHSP-NLTVREALRFSA  104 (192)
T ss_pred             EEeccc-Ccccc-CCcHHHHHHHHH
Confidence            666654 34454 389999998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.66  E-value=4e-16  Score=133.34  Aligned_cols=97  Identities=12%  Similarity=0.032  Sum_probs=72.6

Q ss_pred             eEEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      .|+++|+++.|+.... ...+++|+||+|++|++++|+|+||||||||+++|+|+++   |++|++...+..        
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (280)
T PRK13649          2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNK   78 (280)
T ss_pred             eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccc
Confidence            3899999999974210 1236789999999999999999999999999999999998   899987443311        


Q ss_pred             ----CCCeEEEEecCCC-CCCCCccChhhhHHHHHH
Q 029679          148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ----~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~  178 (189)
                          .+...+|++|+.. .++.  .++.+|+.+...
T Consensus        79 ~~~~~~~~i~~~~q~~~~~~~~--~tv~e~l~~~~~  112 (280)
T PRK13649         79 DIKQIRKKVGLVFQFPESQLFE--ETVLKDVAFGPQ  112 (280)
T ss_pred             CHHHHHhheEEEeeChhhhhcc--ccHHHHHHHHHH
Confidence                1234577787632 3332  589999987643

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.66  E-value=4.1e-16  Score=132.95  Aligned_cols=97  Identities=13%  Similarity=0.115  Sum_probs=73.0

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK-----  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~-----  147 (189)
                      .++|+++|+++.|+.  +  .+++|+||+|.+||+++|+|+||||||||+++|+|++++.  .+++|++...+..     
T Consensus        11 ~~~l~i~nl~~~~~~--~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~   86 (269)
T PRK14259         11 NIIISLQNVTISYGT--F--EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR   86 (269)
T ss_pred             CceEEEEeEEEEECC--E--EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence            458999999999975  2  3578999999999999999999999999999999998621  1478886433211     


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                           .++..++++|+ ..++.  .++.+|+.+...
T Consensus        87 ~~~~~~~~~i~~v~q~-~~l~~--~tv~enl~~~~~  119 (269)
T PRK14259         87 VDPVEVRRRIGMVFQQ-PNPFP--KSIYENIAFGAR  119 (269)
T ss_pred             CCHHHHhhceEEEccC-Cccch--hhHHHHHhhhhh
Confidence                 12345677765 44454  489999987653

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.66  E-value=4.4e-16  Score=144.31  Aligned_cols=106  Identities=17%  Similarity=0.200  Sum_probs=83.6

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc-CCCceeeccCCCC-------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKASSFDSQVK-------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~-~p~~G~i~~~~~~-------  147 (189)
                      ++|+++|+++.|......+.+|+||||+|.+||++||||+|||||||++++|.|+++.. ...+|++...+.+       
T Consensus         4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~   83 (539)
T COG1123           4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER   83 (539)
T ss_pred             ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence            48999999999975434467899999999999999999999999999999999999732 2347886333211       


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                           +.+.+.++||+.+..+.+.+++.+.+......++
T Consensus        84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~  122 (539)
T COG1123          84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG  122 (539)
T ss_pred             HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc
Confidence                 2345778899988888777888888888766544

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.66  E-value=4.5e-16  Score=144.98  Aligned_cols=92  Identities=16%  Similarity=0.082  Sum_probs=74.1

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEE
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~v  154 (189)
                      +++|+++|+++.|+.. +  .+++||||+|.+|++++|+|+||||||||+|+|+|+++   |++|.+....   ....++
T Consensus         4 ~~~l~i~~l~~~y~~~-~--~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~---~~~i~~   74 (556)
T PRK11819          4 QYIYTMNRVSKVVPPK-K--QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAP---GIKVGY   74 (556)
T ss_pred             cEEEEEeeEEEEeCCC-C--eeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecC---CCEEEE
Confidence            4589999999999721 2  35779999999999999999999999999999999998   8999975432   134677


Q ss_pred             EecCCCCCCCCccChhhhHHHHH
Q 029679          155 LPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       155 v~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      ++|+ ..+++ .+++.+|+.++.
T Consensus        75 v~Q~-~~~~~-~~tv~e~l~~~~   95 (556)
T PRK11819         75 LPQE-PQLDP-EKTVRENVEEGV   95 (556)
T ss_pred             EecC-CCCCC-CCcHHHHHHHhh
Confidence            7876 45555 489999998753

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.66  E-value=2.3e-16  Score=144.95  Aligned_cols=93  Identities=19%  Similarity=0.214  Sum_probs=74.1

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ++|+++|+++.|++  +  .+++|+||+|.+||+++|+|+||||||||+|+|+|+++   |++|++...+..        
T Consensus         3 ~~i~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~   75 (501)
T PRK10762          3 ALLQLKGIDKAFPG--V--KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS   75 (501)
T ss_pred             ceEEEeeeEEEeCC--e--EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence            57999999999975  2  35779999999999999999999999999999999998   899997443211        


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                       .+...++++|+ ..+++ .+++.+|+.+++
T Consensus        76 ~~~~~i~~v~q~-~~~~~-~~tv~e~l~~~~  104 (501)
T PRK10762         76 SQEAGIGIIHQE-LNLIP-QLTIAENIFLGR  104 (501)
T ss_pred             HHhCCEEEEEcc-hhccC-CCcHHHHhhhcc
Confidence             12345677765 45555 489999998754

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.66  E-value=3.8e-16  Score=124.73  Aligned_cols=88  Identities=26%  Similarity=0.356  Sum_probs=68.3

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CCC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PPD  150 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~~  150 (189)
                      ++++|+++.|+.  +  .+++++||++.+||+++|+|+||||||||+++|+|+++   +++|++...+..       .+.
T Consensus         1 l~~~~l~~~~~~--~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (173)
T cd03230           1 IEVRNLSKRYGK--K--TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDIKKEPEEVKR   73 (173)
T ss_pred             CEEEEEEEEECC--e--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccchHhhhc
Confidence            468999999975  2  25779999999999999999999999999999999998   888987433211       123


Q ss_pred             eEEEEecCCCCCCCCccChhhhHH
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDPK  174 (189)
Q Consensus       151 ~~~vv~~~~~~l~~~~ltv~enl~  174 (189)
                      ..++++|+ ..++. .+++.+|+.
T Consensus        74 ~i~~~~q~-~~~~~-~~tv~~~~~   95 (173)
T cd03230          74 RIGYLPEE-PSLYE-NLTVRENLK   95 (173)
T ss_pred             cEEEEecC-Ccccc-CCcHHHHhh
Confidence            45677776 44444 378999863

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=5.7e-16  Score=129.91  Aligned_cols=96  Identities=15%  Similarity=0.123  Sum_probs=71.6

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~------  147 (189)
                      ++|+++|+++.|+.  +  .+++|+||+|.+||+++|+|+||||||||+++|+|++++.  .+++|++...+..      
T Consensus         2 ~~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~   77 (249)
T PRK14253          2 NKFNIENLDLFYGE--N--QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNID   77 (249)
T ss_pred             CeEEEeccEEEECC--e--eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccc
Confidence            57999999999975  2  3578999999999999999999999999999999998711  0247876433211      


Q ss_pred             ---CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                         .+...+|++|+ ..++.  .++.+|+.+...
T Consensus        78 ~~~~~~~i~~~~q~-~~~~~--~tv~~~l~~~~~  108 (249)
T PRK14253         78 VADLRIKVGMVFQK-PNPFP--MSIYENVAYGLR  108 (249)
T ss_pred             hHHHHhheeEEecC-CCcCc--ccHHHHHHhHHH
Confidence               12345677765 44443  689999987643

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=4.6e-16  Score=133.82  Aligned_cols=98  Identities=10%  Similarity=0.034  Sum_probs=72.9

Q ss_pred             CeEEEeeeEEEcCccce-eecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           76 PVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~-~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      ..|+++|+++.|+.... ...+++|+||+|.+||+++|+|+||||||||+|+|+|+++   +++|++...+..       
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~   81 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKK   81 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEccccccc
Confidence            45899999999975210 1236789999999999999999999999999999999998   888986432210       


Q ss_pred             ------CCCeEEEEecCCC-CCCCCccChhhhHHHHHH
Q 029679          148 ------PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ------~~~~~~vv~~~~~-~l~~~~ltv~enl~~~~~  178 (189)
                            .++..++++|+.. .++.  .++.+|+.+...
T Consensus        82 ~~~~~~~~~~i~~v~q~~~~~~~~--~tv~enl~~~~~  117 (289)
T PRK13645         82 IKEVKRLRKEIGLVFQFPEYQLFQ--ETIEKDIAFGPV  117 (289)
T ss_pred             cccHHHHhccEEEEEeCcchhhhh--hHHHHHHHHHHH
Confidence                  1234567777632 2332  589999987653

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.65  E-value=5.4e-16  Score=123.51  Aligned_cols=86  Identities=15%  Similarity=0.071  Sum_probs=68.6

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEec
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~  157 (189)
                      |+++|+++.|+.. +  ..++++||++.+||+++|+|+||||||||+++|+|+++   +++|++...+   .+...+++|
T Consensus         1 i~~~~~~~~~~~~-~--~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~---~~~i~~~~q   71 (166)
T cd03223           1 IELENLSLATPDG-R--VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPE---GEDLLFLPQ   71 (166)
T ss_pred             CEEEEEEEEcCCC-C--eeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECC---CceEEEECC
Confidence            4689999999642 2  25779999999999999999999999999999999998   8999975443   245667776


Q ss_pred             CCCCCCCCccChhhhHHH
Q 029679          158 DGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus       158 ~~~~l~~~~ltv~enl~~  175 (189)
                      +.. ++  .+++.+|+.+
T Consensus        72 ~~~-~~--~~tv~~nl~~   86 (166)
T cd03223          72 RPY-LP--LGTLREQLIY   86 (166)
T ss_pred             CCc-cc--cccHHHHhhc
Confidence            633 33  3699999875

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=7e-16  Score=129.43  Aligned_cols=93  Identities=12%  Similarity=0.163  Sum_probs=71.2

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC-----CceeeccCCCC----
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKASSFDSQVK----  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p-----~~G~i~~~~~~----  147 (189)
                      +|+++|+++.|+.  +  .+++|+||+|.+||+++|+|+||||||||+|+|+|+++   +     ++|++...+..    
T Consensus         4 ~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~~   76 (252)
T PRK14272          4 LLSAQDVNIYYGD--K--QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYGP   76 (252)
T ss_pred             EEEEeeeEEEECC--E--EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEcccC
Confidence            6899999999975  2  35779999999999999999999999999999999986   4     36876433211    


Q ss_pred             ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                            .+...++++|+ ..++. .+++.+|+.+...
T Consensus        77 ~~~~~~~~~~i~~~~q~-~~~~~-~~t~~enl~~~~~  111 (252)
T PRK14272         77 RVDPVAMRRRVGMVFQK-PNPFP-TMSVFDNVVAGLK  111 (252)
T ss_pred             ccCHHHhhceeEEEecc-CccCc-CCCHHHHHHHHHH
Confidence                  12345677766 44554 3799999987553

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.65  E-value=7.3e-16  Score=129.34  Aligned_cols=96  Identities=11%  Similarity=0.144  Sum_probs=71.5

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc--cCCCceeeccCCCC-------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK-------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~--~~p~~G~i~~~~~~-------  147 (189)
                      .|+++|+++.|++  +  .+++|+||+|++||+++|+|+||||||||+++|+|++++  ..+++|++...+..       
T Consensus         3 ~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~   78 (250)
T PRK14240          3 KISVKDLDLFYGD--F--QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID   78 (250)
T ss_pred             eEEEEEEEEEECC--c--eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence            5899999999975  2  357799999999999999999999999999999998751  11267886433211       


Q ss_pred             ---CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                         .+...++++|+ ..++.  +++.+|+.+....
T Consensus        79 ~~~~~~~i~~~~q~-~~~~~--~t~~~ni~~~~~~  110 (250)
T PRK14240         79 VNQLRKRVGMVFQQ-PNPFP--MSIYDNVAYGPRT  110 (250)
T ss_pred             hHHHhccEEEEecC-CccCc--ccHHHHHHHHHHh
Confidence               12345677765 44443  6999999876543

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.65  E-value=6.2e-16  Score=125.90  Aligned_cols=96  Identities=18%  Similarity=0.129  Sum_probs=73.1

Q ss_pred             eEEEeeeEEEcCccc--eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh--cccCCCceeeccCCCC-----
Q 029679           77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVK-----  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~--~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~--~~~~p~~G~i~~~~~~-----  147 (189)
                      .|+++++++.|+...  ....+++++||++.+||+++|+|+||||||||+++|+|++  +   +.+|++...+..     
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~   79 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGEVLINGRPLDKRS   79 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEeCchHh
Confidence            589999999996410  0123678999999999999999999999999999999999  8   889987443321     


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      .++..++++++ ..++. .+++.+|+.+..
T Consensus        80 ~~~~i~~~~q~-~~~~~-~~t~~~~i~~~~  107 (194)
T cd03213          80 FRKIIGYVPQD-DILHP-TLTVRETLMFAA  107 (194)
T ss_pred             hhheEEEccCc-ccCCC-CCcHHHHHHHHH
Confidence            23345667765 44454 389999998754

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.65  E-value=4.6e-16  Score=127.81  Aligned_cols=89  Identities=22%  Similarity=0.237  Sum_probs=69.7

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCCe
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDV  151 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~~  151 (189)
                      ++++|+++.|+.      .+.++||++.+||+++|+|+||||||||+|+|+|+++   +++|++...+..      .++.
T Consensus         1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   71 (213)
T TIGR01277         1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP   71 (213)
T ss_pred             CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence            478999999963      2359999999999999999999999999999999998   899987443321      1234


Q ss_pred             EEEEecCCCCCCCCccChhhhHHHHH
Q 029679          152 ATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       152 ~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      .++++|+ ..++. .+++.+|+.+..
T Consensus        72 i~~v~q~-~~~~~-~~t~~en~~~~~   95 (213)
T TIGR01277        72 VSMLFQE-NNLFA-HLTVRQNIGLGL   95 (213)
T ss_pred             eEEEecc-CccCC-CCcHHHHHHhHh
Confidence            6677766 44554 379999998654

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=1.1e-15  Score=129.97  Aligned_cols=97  Identities=12%  Similarity=0.167  Sum_probs=72.1

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc--ccCCCceeeccCCCC-----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVK-----  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~--~~~p~~G~i~~~~~~-----  147 (189)
                      .++|+++|+++.|++  +  .+++++||+|++||+++|+|+||||||||+++|+|++.  +..+++|++...+..     
T Consensus        19 ~~~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   94 (268)
T PRK14248         19 EHILEVKDLSIYYGE--K--RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN   94 (268)
T ss_pred             CceEEEEEEEEEeCC--c--eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence            458999999999975  2  35779999999999999999999999999999999863  112578886433211     


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                           .+...+|++|+ ..++.  .++.+|+.+...
T Consensus        95 ~~~~~~~~~i~~v~q~-~~~~~--~tv~enl~~~~~  127 (268)
T PRK14248         95 INVVNLRREIGMVFQK-PNPFP--KSIYNNITHALK  127 (268)
T ss_pred             ccHHHHhccEEEEecC-CccCc--ccHHHHHHHHHH
Confidence                 12345677765 44444  489999987643

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.65  E-value=3.6e-16  Score=132.83  Aligned_cols=93  Identities=16%  Similarity=0.195  Sum_probs=72.5

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      ..+|+++|+++.|++  +  .+++++||++.+||+++|+|+||||||||+++|+|+++   +++|++...+..       
T Consensus         5 ~~~l~i~~l~~~~~~--~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~   77 (265)
T PRK10253          5 VARLRGEQLTLGYGK--Y--TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASK   77 (265)
T ss_pred             ccEEEEEEEEEEECC--E--EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHH
Confidence            357999999999975  2  35779999999999999999999999999999999998   889987433321       


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                       .+...+|++|+ ..++. .+++.+|+.+.
T Consensus        78 ~~~~~i~~v~q~-~~~~~-~~tv~~~~~~~  105 (265)
T PRK10253         78 EVARRIGLLAQN-ATTPG-DITVQELVARG  105 (265)
T ss_pred             HHhhheEEeecc-CcCCC-CCcHHHHHHhC
Confidence             12245677766 44444 37899998764

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=8.7e-16  Score=129.08  Aligned_cols=94  Identities=14%  Similarity=0.180  Sum_probs=72.3

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCC-----ceeeccCCCC---
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVK---  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~-----~G~i~~~~~~---  147 (189)
                      ++|+++|+++.|+.  +  .+++|+||+|.+|++++|+|+||||||||+++|+|+++   ++     +|.+...+..   
T Consensus         3 ~~l~~~~l~~~~~~--~--~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~   75 (251)
T PRK14249          3 PKIKIRGVNFFYHK--H--QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIYS   75 (251)
T ss_pred             ceEEEEEEEEEECC--e--eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEccc
Confidence            57999999999975  2  25779999999999999999999999999999999997   54     5776432211   


Q ss_pred             -------CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 -------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                             .+...++++|+ ..+++  .++.+|+.+....
T Consensus        76 ~~~~~~~~~~~i~~v~q~-~~~~~--~tv~enl~~~~~~  111 (251)
T PRK14249         76 PNLDVVNLRKRVGMVFQQ-PNPFP--KSIFDNVAFGPRM  111 (251)
T ss_pred             cccChHHhhceEEEEecC-CccCc--CcHHHHHhhHHHh
Confidence                   13446777866 44554  4899999876543

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=4.4e-16  Score=129.47  Aligned_cols=90  Identities=20%  Similarity=0.224  Sum_probs=70.2

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPD  150 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~  150 (189)
                      +|+++|+++.|+..    ..  +|||++.+|++++|+|+||||||||+++|+|+++   +++|++...+..      ...
T Consensus         1 ~l~~~~l~~~~~~~----~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   71 (232)
T PRK10771          1 MLKLTDITWLYHHL----PM--RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR   71 (232)
T ss_pred             CeEEEEEEEEECCc----cc--eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence            48899999999741    22  8999999999999999999999999999999998   889987443321      123


Q ss_pred             eEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       151 ~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      ..++++|+ ..+++ .+++.+|+.+..
T Consensus        72 ~i~~~~q~-~~~~~-~~tv~e~l~~~~   96 (232)
T PRK10771         72 PVSMLFQE-NNLFS-HLTVAQNIGLGL   96 (232)
T ss_pred             cEEEEecc-ccccc-CCcHHHHHhccc
Confidence            45677765 44555 379999997653

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.65  E-value=1e-15  Score=129.10  Aligned_cols=93  Identities=13%  Similarity=0.104  Sum_probs=70.0

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC----CceeeccCCCC-----
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSFDSQVK-----  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p----~~G~i~~~~~~-----  147 (189)
                      +|+++|+++.| +  +  ..++|+||++.+||+++|+|+||||||||+++|+|+++   +    ++|++...+..     
T Consensus         4 ~l~~~~l~~~~-~--~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~~   75 (254)
T PRK10418          4 QIELRNIALQA-A--Q--PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPCA   75 (254)
T ss_pred             EEEEeCeEEEe-c--c--ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeeccccc
Confidence            69999999999 3  2  25779999999999999999999999999999999998   6    88987443321     


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                       .++..+|++|+....+...+++.+|+.+.+
T Consensus        76 ~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~  106 (254)
T PRK10418         76 LRGRKIATIMQNPRSAFNPLHTMHTHARETC  106 (254)
T ss_pred             cccceEEEEecCCccccCccccHHHHHHHHH
Confidence             123467778774323333467777766543

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.65  E-value=3.2e-16  Score=144.19  Aligned_cols=93  Identities=17%  Similarity=0.202  Sum_probs=73.5

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC--CceeeccCCCC------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVK------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p--~~G~i~~~~~~------  147 (189)
                      ++|+++|+++.|++  +  .+++||||+|.+||+++|+|+||||||||+|+|+|+++   +  ++|.+...+..      
T Consensus         4 ~~l~~~nl~~~~~~--~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~~   76 (506)
T PRK13549          4 YLLEMKNITKTFGG--V--KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASNI   76 (506)
T ss_pred             ceEEEeeeEEEeCC--e--EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCH
Confidence            58999999999975  2  35789999999999999999999999999999999997   5  68887443311      


Q ss_pred             ---CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                         .+...++++|+ ..++. .+++.+|+.+.+
T Consensus        77 ~~~~~~~i~~v~q~-~~~~~-~~tv~e~l~~~~  107 (506)
T PRK13549         77 RDTERAGIAIIHQE-LALVK-ELSVLENIFLGN  107 (506)
T ss_pred             HHHHHCCeEEEEec-cccCC-CCcHHHHhhhcc
Confidence               12336777876 44555 489999998764

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=1.1e-15  Score=128.38  Aligned_cols=97  Identities=13%  Similarity=0.090  Sum_probs=71.9

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc--ccCCCceeeccCCCC------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVK------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~--~~~p~~G~i~~~~~~------  147 (189)
                      ++|+++|+++.|+.  +  .+++++||+|.+||+++|+|+||||||||+++|+|+++  +..+++|++...+..      
T Consensus         4 ~~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   79 (252)
T PRK14255          4 KIITSSDVHLFYGK--F--EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE   79 (252)
T ss_pred             ceEEEEeEEEEECC--e--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc
Confidence            57999999999975  2  35779999999999999999999999999999999864  111257876433211      


Q ss_pred             ----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                          .+...++++|+ ..+++  .++.+|+.+....
T Consensus        80 ~~~~~~~~i~~~~q~-~~~~~--~tv~~nl~~~~~~  112 (252)
T PRK14255         80 DVVQLRKQVGMVFQQ-PNPFP--FSIYENVIYGLRL  112 (252)
T ss_pred             cHHHhcCeEEEEECC-CccCC--CcHHHHHHHHHHH
Confidence                12346677765 44443  5899999876543

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.65  E-value=3.8e-16  Score=130.55  Aligned_cols=81  Identities=19%  Similarity=0.172  Sum_probs=61.5

Q ss_pred             cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CCCeEEEEecCCCCCCCCcc
Q 029679           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PPDVATVLPMDGFHLYLSQL  167 (189)
Q Consensus        95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~~~~~vv~~~~~~l~~~~l  167 (189)
                      .+++|+||+|++||+++|+|+||||||||+|+|+|+++   |++|++...+..       .+...++++++...++. .+
T Consensus        35 ~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~-~~  110 (236)
T cd03267          35 EALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW-DL  110 (236)
T ss_pred             eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEEEcCCccccCC-CC
Confidence            36889999999999999999999999999999999998   899987443321       12245566644344444 48


Q ss_pred             ChhhhHHHHHHH
Q 029679          168 DAMEDPKEAHAR  179 (189)
Q Consensus       168 tv~enl~~~~~~  179 (189)
                      ++.+|+.+....
T Consensus       111 tv~e~l~~~~~~  122 (236)
T cd03267         111 PVIDSFYLLAAI  122 (236)
T ss_pred             cHHHHHHHHHHH
Confidence            999998876543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.65  E-value=3.9e-16  Score=129.89  Aligned_cols=90  Identities=16%  Similarity=0.195  Sum_probs=69.4

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP  149 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~  149 (189)
                      |+++|+++.|+...+  .+++|+||++++||+++|+|+||||||||+++|+|+++   +++|++...+..        .+
T Consensus         1 i~~~~l~~~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   75 (237)
T cd03252           1 ITFEHVRFRYKPDGP--VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAWLR   75 (237)
T ss_pred             CEEEEEEEecCCCCc--cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHHHh
Confidence            478999999964212  35779999999999999999999999999999999998   899987443321        12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~  175 (189)
                      +..++++|+. .++.  .++.+|+.+
T Consensus        76 ~~i~~~~q~~-~~~~--~tv~~nl~~   98 (237)
T cd03252          76 RQVGVVLQEN-VLFN--RSIRDNIAL   98 (237)
T ss_pred             hcEEEEcCCc-hhcc--chHHHHhhc
Confidence            3467777663 3442  689999876

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.65  E-value=3.8e-16  Score=133.89  Aligned_cols=91  Identities=18%  Similarity=0.147  Sum_probs=69.7

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCC--------ceeeccCCCC-
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KASSFDSQVK-  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~--------~G~i~~~~~~-  147 (189)
                      ||+++|+++.|++  +  .+++++||+|.+||+++|+|+||||||||+|+|+|+++   ++        +|++...+.. 
T Consensus         1 ml~~~nl~~~~~~--~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~   73 (272)
T PRK13547          1 MLTADHLHVARRH--R--AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL   73 (272)
T ss_pred             CeEEEEEEEEECC--E--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence            4899999999975  2  35679999999999999999999999999999999997   76        7886433311 


Q ss_pred             -------CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 -------~~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                             .++..++++|+.. .+.. +++.+|+.+.
T Consensus        74 ~~~~~~~~~~~~~~v~q~~~-~~~~-~tv~e~l~~~  107 (272)
T PRK13547         74 AAIDAPRLARLRAVLPQAAQ-PAFA-FSAREIVLLG  107 (272)
T ss_pred             ccCCHHHHHhhcEEecccCC-CCCC-CcHHHHHhhc
Confidence                   1223567776633 2333 7899998774

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.65  E-value=1.2e-15  Score=131.34  Aligned_cols=99  Identities=14%  Similarity=0.132  Sum_probs=74.4

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC----
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----  147 (189)
                      ..++|+++|+++.|+.  +  .+++|+||+|.+||+++|+|+||||||||+++|+|++++.  .+++|++...+..    
T Consensus        36 ~~~~l~i~~l~~~~~~--~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~  111 (285)
T PRK14254         36 GETVIEARDLNVFYGD--E--QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA  111 (285)
T ss_pred             CCceEEEEEEEEEECC--E--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence            4578999999999975  2  3577999999999999999999999999999999998621  1478886433211    


Q ss_pred             ------CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                            .++...+++|+ ..++.  .++.+|+.+....
T Consensus       112 ~~~~~~~~~~i~~v~q~-~~l~~--~tv~enl~~~~~~  146 (285)
T PRK14254        112 DVDPVALRRRIGMVFQK-PNPFP--KSIYDNVAYGLKI  146 (285)
T ss_pred             ccchHhhhccEEEEecC-CccCc--CCHHHHHHHHHHH
Confidence                  12345677766 34444  4899999876543

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.64  E-value=3.2e-16  Score=144.40  Aligned_cols=91  Identities=20%  Similarity=0.238  Sum_probs=74.3

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PP  149 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~  149 (189)
                      .|+++||++.|+.. +  ..|+|+||++++|+.++|+|+||||||||+++|+|+++   |++|++..++.+       .+
T Consensus       334 ~I~~~~vsf~Y~~~-~--~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr  407 (529)
T TIGR02868       334 TLELRDLSFGYPGS-P--PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR  407 (529)
T ss_pred             eEEEEEEEEecCCC-C--ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence            59999999999753 2  25789999999999999999999999999999999999   999998554422       13


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      +..++++|+ ..++.  .|+++|+.++
T Consensus       408 ~~i~~V~Q~-~~lF~--~TI~eNI~~g  431 (529)
T TIGR02868       408 RRISVFAQD-AHLFD--TTVRDNLRLG  431 (529)
T ss_pred             hheEEEccC-ccccc--ccHHHHHhcc
Confidence            456788877 44554  5899999875

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.64  E-value=4.5e-16  Score=131.30  Aligned_cols=90  Identities=17%  Similarity=0.179  Sum_probs=70.4

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP  149 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~  149 (189)
                      |+++|+++.|++  +  .+++++||++.+||+++|+|+||||||||+++|+|+++   +++|++...+..        .+
T Consensus         2 l~~~~l~~~~~~--~--~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   74 (256)
T TIGR03873         2 LRLSRVSWSAGG--R--LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA   74 (256)
T ss_pred             ceEEeEEEEECC--E--EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence            688999999975  2  35779999999999999999999999999999999998   899987443321        12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ....|++|+ ...+. .+++.+|+.+.
T Consensus        75 ~~i~~~~q~-~~~~~-~~tv~e~l~~~   99 (256)
T TIGR03873        75 RRVALVEQD-SDTAV-PLTVRDVVALG   99 (256)
T ss_pred             hheEEeccc-CccCC-CCCHHHHHHhc
Confidence            235677765 33333 37999999774

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.64  E-value=4e-16  Score=133.01  Aligned_cols=91  Identities=16%  Similarity=0.160  Sum_probs=69.5

Q ss_pred             EEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----------
Q 029679           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----------  147 (189)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----------  147 (189)
                      .++++++.|+..    .+++|+||++.+|++++|+|+||||||||+++|+|+++   |++|.+...+..           
T Consensus        26 ~~~~~~~~~~~~----~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~   98 (269)
T cd03294          26 SKEEILKKTGQT----VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE   98 (269)
T ss_pred             hhhhhhhhcCCc----eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence            456788888652    35779999999999999999999999999999999998   889987433211           


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                       .....++++|+ ..+++ .+++.+|+.+.+.
T Consensus        99 ~~~~~i~~v~q~-~~~~~-~~tv~e~l~~~~~  128 (269)
T cd03294          99 LRRKKISMVFQS-FALLP-HRTVLENVAFGLE  128 (269)
T ss_pred             hhcCcEEEEecC-cccCC-CCcHHHHHHHHHH
Confidence             02345677765 44554 3899999988654

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.64  E-value=1.1e-15  Score=128.34  Aligned_cols=96  Identities=13%  Similarity=0.108  Sum_probs=71.9

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc--cCCCceeeccCCCC------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~--~~p~~G~i~~~~~~------  147 (189)
                      ++|+++|+++.|+.  +  ..++++||+|.+||+++|+|+||||||||+++|+|++.+  ..+++|++...+..      
T Consensus         3 ~~l~~~~l~~~~~~--~--~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~   78 (251)
T PRK14251          3 NIISAKDVHLSYGN--Y--EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM   78 (251)
T ss_pred             ceEEEEeeEEEECC--e--eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence            47999999999975  2  357799999999999999999999999999999999851  11367876432211      


Q ss_pred             ----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                          .++..++++|+ ..++.  .++.+|+.+...
T Consensus        79 ~~~~~~~~i~~~~q~-~~~~~--~tv~enl~~~~~  110 (251)
T PRK14251         79 DLVELRKEVGMVFQQ-PTPFP--FSVYDNVAYGLK  110 (251)
T ss_pred             hHHHhhccEEEEecC-CccCC--CcHHHHHHHHHH
Confidence                12345677765 44443  699999987654

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.64  E-value=5.9e-16  Score=126.70  Aligned_cols=89  Identities=20%  Similarity=0.229  Sum_probs=69.4

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCCe
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDV  151 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~~  151 (189)
                      |+++|+++.|++  +  ..  |+||++.+||+++|+|+||||||||+++|+|+++   +++|++...+..      .++.
T Consensus         1 i~~~~l~~~~~~--~--~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~   71 (211)
T cd03298           1 VRLDKIRFSYGE--Q--PM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP   71 (211)
T ss_pred             CEEEeEEEEeCC--E--ec--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence            478999999975  2  12  9999999999999999999999999999999998   899987443321      1234


Q ss_pred             EEEEecCCCCCCCCccChhhhHHHHH
Q 029679          152 ATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       152 ~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      .++++|+ ..+++ .+++.+|+.+..
T Consensus        72 i~~~~q~-~~~~~-~~tv~enl~~~~   95 (211)
T cd03298          72 VSMLFQE-NNLFA-HLTVEQNVGLGL   95 (211)
T ss_pred             EEEEecc-cccCC-CCcHHHHHhccc
Confidence            6677766 44554 379999998654

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.64  E-value=9.7e-16  Score=128.92  Aligned_cols=98  Identities=13%  Similarity=0.109  Sum_probs=72.3

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK-----  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~-----  147 (189)
                      .++|+++|+++.|++  +  .+++|+||++++||+++|+|+||||||||+++|+|++...  .+++|++...+..     
T Consensus         4 ~~~i~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~   79 (253)
T PRK14261          4 EIILSTKNLNLWYGE--K--HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG   79 (253)
T ss_pred             cceEEEeeeEEEECC--e--eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc
Confidence            358999999999975  2  3577999999999999999999999999999999997511  1247876433211     


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                           .+...++++|+ ..++.  .++.+|+.+....
T Consensus        80 ~~~~~~~~~i~~~~q~-~~~~~--~tv~eni~~~~~~  113 (253)
T PRK14261         80 ADVVALRRKIGMVFQR-PNPFP--KSIYENVAYGPRI  113 (253)
T ss_pred             cchhhhhceEEEEecC-CccCc--ccHHHHHHhhHHh
Confidence                 12345677765 34444  4899999876543

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.64  E-value=5.4e-16  Score=128.15  Aligned_cols=96  Identities=16%  Similarity=0.177  Sum_probs=73.3

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------  147 (189)
                      ..++|+++++++.|++.. ...+++++||+|++|++++|+|+||||||||+++|+|+++   +++|++...+..      
T Consensus         8 ~~~~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~   83 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEH   83 (226)
T ss_pred             cCceEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCH
Confidence            346899999999997521 1236789999999999999999999999999999999998   899987544321      


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                        .++..++++|+. .++.  .++.+|+.+.
T Consensus        84 ~~~~~~i~~~~q~~-~l~~--~tv~~nl~~~  111 (226)
T cd03248          84 KYLHSKVSLVGQEP-VLFA--RSLQDNIAYG  111 (226)
T ss_pred             HHHHhhEEEEeccc-HHHh--hhHHHHhccc
Confidence              123456777663 4443  5888988754

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.64  E-value=5.9e-16  Score=137.19  Aligned_cols=89  Identities=16%  Similarity=0.167  Sum_probs=70.1

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------  147 (189)
                      ||++ |++|.|++.    ..  |+||++++||+++|+|+||||||||+|+|+|+++   |++|.+...+..         
T Consensus         1 ~l~~-~l~k~~~~~----~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~   70 (352)
T PRK11144          1 MLEL-NFKQQLGDL----CL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC   70 (352)
T ss_pred             CeEE-EEEEEeCCE----EE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence            4788 999999752    12  8999999999999999999999999999999998   899987433211         


Q ss_pred             ---CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                         .++..+|++|+ ..+++. +++.+|+.++.
T Consensus        71 ~~~~~~~i~~v~q~-~~l~~~-~tv~enl~~~~  101 (352)
T PRK11144         71 LPPEKRRIGYVFQD-ARLFPH-YKVRGNLRYGM  101 (352)
T ss_pred             cchhhCCEEEEcCC-cccCCC-CcHHHHHHhhh
Confidence               12345677765 566664 89999998764

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.64  E-value=1e-15  Score=130.13  Aligned_cols=97  Identities=13%  Similarity=0.126  Sum_probs=72.2

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK-----  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~-----  147 (189)
                      .++|+++|+++.|+.  +  .+++|+||+|++||+++|+|+||||||||+++|+|++.+.  .+++|++...+..     
T Consensus         8 ~~~l~i~~v~~~~~~--~--~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   83 (264)
T PRK14243          8 ETVLRTENLNVYYGS--F--LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD   83 (264)
T ss_pred             ceEEEEeeeEEEECC--E--EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence            458999999999975  2  3577999999999999999999999999999999998521  1367886433211     


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                           .++..++++|+ ..++.  .++.+|+.+...
T Consensus        84 ~~~~~~~~~i~~v~q~-~~~~~--~tv~enl~~~~~  116 (264)
T PRK14243         84 VDPVEVRRRIGMVFQK-PNPFP--KSIYDNIAYGAR  116 (264)
T ss_pred             cChHHHhhhEEEEccC-Ccccc--ccHHHHHHhhhh
Confidence                 12345677765 44444  489999987653

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.64  E-value=6.9e-16  Score=130.54  Aligned_cols=98  Identities=18%  Similarity=0.200  Sum_probs=73.7

Q ss_pred             CeEEEeeeEEEcCcc--------------------ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccC
Q 029679           76 PVVEARCMDEVYDAL--------------------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW  135 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~--------------------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~  135 (189)
                      ++|+++||++.|.-.                    ...+++|+||||++.+||.+||||+||||||||+|+|+|.++   
T Consensus         2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---   78 (249)
T COG1134           2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---   78 (249)
T ss_pred             cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---
Confidence            568888888887311                    124789999999999999999999999999999999999999   


Q ss_pred             CCceeeccCCCCCCCeEEEEe-cCCCCCCCCccChhhhHHHHHHHcCCC
Q 029679          136 PQKASSFDSQVKPPDVATVLP-MDGFHLYLSQLDAMEDPKEAHARRGGE  183 (189)
Q Consensus       136 p~~G~i~~~~~~~~~~~~vv~-~~~~~l~~~~ltv~enl~~~~~~~g~~  183 (189)
                      |++|.+...+..    ..++. -.+|+  + .+|.++|+.+.....|+.
T Consensus        79 Pt~G~v~v~G~v----~~li~lg~Gf~--p-elTGreNi~l~~~~~G~~  120 (249)
T COG1134          79 PTSGKVKVTGKV----APLIELGAGFD--P-ELTGRENIYLRGLILGLT  120 (249)
T ss_pred             CCCceEEEcceE----ehhhhcccCCC--c-ccchHHHHHHHHHHhCcc
Confidence            999997544321    11111 11222  2 589999999877666553

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.64  E-value=5.5e-16  Score=148.42  Aligned_cols=92  Identities=18%  Similarity=0.149  Sum_probs=75.4

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .++++|++++|+....  ..|+|+||+|++||.+||||+||||||||+|+|+|++.   |++|++..++.+        .
T Consensus       471 ~I~~~nvsf~y~~~~~--~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i~~~~l  545 (709)
T COG2274         471 EIEFENVSFRYGPDDP--PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLASL  545 (709)
T ss_pred             eEEEEEEEEEeCCCCc--chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhcCHHHH
Confidence            5999999999987422  45779999999999999999999999999999999999   999998554432        3


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++..++++|+.+. |.  -|+.||+.+.
T Consensus       546 R~~ig~V~Q~~~L-f~--gSI~eNi~l~  570 (709)
T COG2274         546 RRQVGYVLQDPFL-FS--GSIRENIALG  570 (709)
T ss_pred             HhheeEEcccchh-hc--CcHHHHHhcC
Confidence            5667888987443 32  5799988764

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.64  E-value=1.7e-16  Score=129.99  Aligned_cols=90  Identities=21%  Similarity=0.261  Sum_probs=72.6

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPD  150 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~  150 (189)
                      +|.+++|.+.|+..  +.    ..+++|++||+++|+||||||||||+++|+|++.   |++|.++.++.+      ..+
T Consensus         1 ~l~L~~V~~~y~~~--~~----~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R   71 (231)
T COG3840           1 MLALDDVRFSYGHL--PM----RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER   71 (231)
T ss_pred             CccccceEEeeCcc--eE----EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence            46788999999763  11    6799999999999999999999999999999998   999998665533      233


Q ss_pred             eEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       151 ~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      -..+++|+ .++|.+ +||.+|+.+++
T Consensus        72 PVSmlFQE-nNLFaH-LtV~qNigLGl   96 (231)
T COG3840          72 PVSMLFQE-NNLFAH-LTVAQNIGLGL   96 (231)
T ss_pred             Chhhhhhc-cccchh-hhhhhhhcccC
Confidence            44556654 788875 99999998865

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.64  E-value=3.9e-16  Score=129.47  Aligned_cols=91  Identities=19%  Similarity=0.182  Sum_probs=69.8

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP  149 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~  149 (189)
                      |+++|+++.|+...  ..+++++||++++|++++|+|+||||||||+++|+|+++   |++|++...+..        .+
T Consensus         1 i~~~~l~~~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   75 (234)
T cd03251           1 VEFKNVTFRYPGDG--PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLASLR   75 (234)
T ss_pred             CEEEEEEEEeCCCC--ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHHHH
Confidence            47899999997521  235789999999999999999999999999999999998   899987543311        12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      +..++++|+ ..++.  .++.+|+.+.
T Consensus        76 ~~i~~~~q~-~~~~~--~tv~enl~~~   99 (234)
T cd03251          76 RQIGLVSQD-VFLFN--DTVAENIAYG   99 (234)
T ss_pred             hhEEEeCCC-Ceecc--ccHHHHhhcc
Confidence            345677766 34443  5899998764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.64  E-value=5e-16  Score=138.62  Aligned_cols=82  Identities=18%  Similarity=0.236  Sum_probs=66.6

Q ss_pred             cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----C-------CCeEEEEecCCCCC
Q 029679           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----P-------PDVATVLPMDGFHL  162 (189)
Q Consensus        95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~-------~~~~~vv~~~~~~l  162 (189)
                      .+|+|+||+|++||+++|+|+||||||||+|+|+|+++   |++|++...+..     .       ++..+|++|+ +.+
T Consensus         7 ~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~-~~l   82 (363)
T TIGR01186         7 KGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ-FAL   82 (363)
T ss_pred             eeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC-CcC
Confidence            36789999999999999999999999999999999999   999997543321     0       3456777765 667


Q ss_pred             CCCccChhhhHHHHHHHcC
Q 029679          163 YLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       163 ~~~~ltv~enl~~~~~~~g  181 (189)
                      ++. +|+.+|+.+.....+
T Consensus        83 ~~~-~TV~eNi~~~~~~~~  100 (363)
T TIGR01186        83 FPH-MTILQNTSLGPELLG  100 (363)
T ss_pred             CCC-CCHHHHHHHHHHHcC
Confidence            764 899999998776544

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.64  E-value=1.5e-16  Score=130.95  Aligned_cols=102  Identities=15%  Similarity=0.128  Sum_probs=75.6

Q ss_pred             CCeEEEeeeEEEcCcc-----ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--
Q 029679           75 IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~-----~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--  147 (189)
                      +++++++|++|.|...     +..+.||+.|||++++|+++||+|+||||||||+|||+|+.+   |++|++..++..  
T Consensus         2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~   78 (267)
T COG4167           2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH   78 (267)
T ss_pred             cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence            4679999999999531     234678999999999999999999999999999999999999   999997544422  


Q ss_pred             ------CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                            +...+.+++||.-..+.+.+.+-+-+..++++
T Consensus        79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l  116 (267)
T COG4167          79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRL  116 (267)
T ss_pred             ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhh
Confidence                  23345566777544443345555555555543

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.64  E-value=1.1e-15  Score=127.53  Aligned_cols=92  Identities=13%  Similarity=0.249  Sum_probs=71.9

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCCe
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDV  151 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~~  151 (189)
                      |+++|+++.|+.  .   +++|+||+|.+||+++|+|+||||||||+++|+|+++   +++|++...+..      .+..
T Consensus         1 l~~~~l~~~~~~--~---~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~   72 (235)
T cd03299           1 LKVENLSKDWKE--F---KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD   72 (235)
T ss_pred             CeeEeEEEEeCC--c---eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence            468999999975  2   4789999999999999999999999999999999998   899986433211      1234


Q ss_pred             EEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          152 ATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       152 ~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      ..+++++ ..++. .+++.+|+.+....
T Consensus        73 i~~~~q~-~~~~~-~~t~~e~l~~~~~~   98 (235)
T cd03299          73 ISYVPQN-YALFP-HMTVYKNIAYGLKK   98 (235)
T ss_pred             EEEEeec-CccCC-CccHHHHHHHHHHH
Confidence            5677765 44554 38999999876543

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.64  E-value=9.5e-16  Score=131.38  Aligned_cols=96  Identities=14%  Similarity=0.191  Sum_probs=72.3

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK-----  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~-----  147 (189)
                      .++|+++|+++.|+.  +  .+++|+||+|.+||+++|+|+||||||||+++|+|++++.  .+++|++...+..     
T Consensus        19 ~~~l~i~nl~~~~~~--~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~   94 (276)
T PRK14271         19 APAMAAVNLTLGFAG--K--TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR   94 (276)
T ss_pred             CcEEEEeeEEEEECC--E--EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccc
Confidence            468999999999975  2  3567999999999999999999999999999999998721  0257886433211     


Q ss_pred             ----CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                          .+....|++|+ ..+++  +++.+|+.+..
T Consensus        95 ~~~~~~~~i~~v~q~-~~l~~--~tv~eni~~~~  125 (276)
T PRK14271         95 DVLEFRRRVGMLFQR-PNPFP--MSIMDNVLAGV  125 (276)
T ss_pred             hhHHHhhheEEeccC-CccCC--ccHHHHHHHHH
Confidence                12345677765 44444  68999998764

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.64  E-value=1.2e-15  Score=129.44  Aligned_cols=96  Identities=15%  Similarity=0.104  Sum_probs=73.0

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC------CCC
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS------QVK  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~------~~~  147 (189)
                      ..|+|+++++++.|++.    .+++||||++.+||+++|+|+||||||||+++|+|++.   +++|++...      +..
T Consensus         7 ~~~~i~~~~~~~~~~~~----~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~   79 (257)
T PRK14246          7 AEDVFNISRLYLYINDK----AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKD   79 (257)
T ss_pred             hhhheeeeeEEEecCCc----eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCcc
Confidence            34689999999999762    35779999999999999999999999999999999998   777654211      111


Q ss_pred             --------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 --------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                              .+...++++++ ..+++ .+++.+|+.+...
T Consensus        80 ~~~~~~~~~~~~i~~~~q~-~~~~~-~~tv~~nl~~~~~  116 (257)
T PRK14246         80 IFQIDAIKLRKEVGMVFQQ-PNPFP-HLSIYDNIAYPLK  116 (257)
T ss_pred             cccCCHHHHhcceEEEccC-CccCC-CCcHHHHHHHHHH
Confidence                    12345677765 34444 3799999988654

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.64  E-value=7.9e-16  Score=141.91  Aligned_cols=94  Identities=19%  Similarity=0.200  Sum_probs=74.0

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------  147 (189)
                      ..++|+++|+++.|++  +  .+++|+||+|.+|++++|+|+||||||||+|+|+|+++   |++|++...+..      
T Consensus         8 ~~~~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~   80 (510)
T PRK15439          8 APPLLCARSISKQYSG--V--EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTP   80 (510)
T ss_pred             CCceEEEEeEEEEeCC--c--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence            3458999999999975  2  35779999999999999999999999999999999998   899997443311      


Q ss_pred             ---CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 ---~~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                         .+...++++|+ ..++. .+++.+|+.+.
T Consensus        81 ~~~~~~~i~~v~q~-~~~~~-~~tv~e~l~~~  110 (510)
T PRK15439         81 AKAHQLGIYLVPQE-PLLFP-NLSVKENILFG  110 (510)
T ss_pred             HHHHhCCEEEEecc-CccCC-CCcHHHHhhcc
Confidence               11235677766 44555 48999998764

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.64  E-value=4.9e-16  Score=124.63  Aligned_cols=88  Identities=24%  Similarity=0.343  Sum_probs=67.4

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----------  147 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----------  147 (189)
                      |+++|+++.|+.  +  .+++++||++.+||+++|+|+||||||||+++|+|+++   +++|++...+..          
T Consensus         1 i~~~~l~~~~~~--~--~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (178)
T cd03229           1 LELKNVSKRYGQ--K--TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDGEDLTDLEDELPP   73 (178)
T ss_pred             CEEEEEEEEECC--e--EEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccchhHHH
Confidence            478999999975  2  35779999999999999999999999999999999998   889987432211          


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHH
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPK  174 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~  174 (189)
                      .+....+++++ ...+. .+++.+|+.
T Consensus        74 ~~~~i~~~~q~-~~~~~-~~t~~~~l~   98 (178)
T cd03229          74 LRRRIGMVFQD-FALFP-HLTVLENIA   98 (178)
T ss_pred             HhhcEEEEecC-CccCC-CCCHHHhee
Confidence            12345667765 33444 378888865

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.64  E-value=5.7e-16  Score=142.52  Aligned_cols=92  Identities=17%  Similarity=0.200  Sum_probs=72.8

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ++|+++|+++.|++  +  .+++||||+|++||+++|+|+||||||||+|+|+|+++   |++|++...+..        
T Consensus         4 ~~l~~~~l~~~~~~--~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~   76 (510)
T PRK09700          4 PYISMAGIGKSFGP--V--HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHKL   76 (510)
T ss_pred             ceEEEeeeEEEcCC--e--EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHHH
Confidence            58999999999975  2  35779999999999999999999999999999999998   899987443311        


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                       .+...++++|+ ..++. .+++.+|+.+.
T Consensus        77 ~~~~~i~~v~q~-~~~~~-~~tv~e~l~~~  104 (510)
T PRK09700         77 AAQLGIGIIYQE-LSVID-ELTVLENLYIG  104 (510)
T ss_pred             HHHCCeEEEeec-ccccC-CCcHHHHhhhc
Confidence             11235677765 44444 48999998764

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.64  E-value=1.1e-15  Score=126.59  Aligned_cols=100  Identities=13%  Similarity=0.057  Sum_probs=73.8

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----CCCe
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDV  151 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~~~~  151 (189)
                      ++.++|+++.|++......+++|+||++++||+++|+|+||||||||+++|+|+++..-+++|.+...+..     .++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~   82 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC   82 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence            57899999999653112346789999999999999999999999999999999985211477876433321     2334


Q ss_pred             EEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          152 ATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       152 ~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      .++++|+ ..++. .+++.+|+.+...
T Consensus        83 i~~~~q~-~~~~~-~~tv~enl~~~~~  107 (226)
T cd03234          83 VAYVRQD-DILLP-GLTVRETLTYTAI  107 (226)
T ss_pred             EEEeCCC-CccCc-CCcHHHHHHHHHH
Confidence            5677765 44554 4899999988654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.63  E-value=7.3e-16  Score=126.83  Aligned_cols=89  Identities=18%  Similarity=0.235  Sum_probs=69.0

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP  149 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~  149 (189)
                      |+++|+++.|+...+  .+++|+||++++|++++|+|+||||||||+++|+|+++   +++|++...+..        .+
T Consensus         3 l~~~~l~~~~~~~~~--~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   77 (221)
T cd03244           3 IEFKNVSLRYRPNLP--PVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR   77 (221)
T ss_pred             EEEEEEEEecCCCCc--ccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence            789999999975212  35789999999999999999999999999999999998   889987443321        12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPK  174 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~  174 (189)
                      +..++++|+. .++.  .++.+|+.
T Consensus        78 ~~i~~~~q~~-~l~~--~tv~enl~   99 (221)
T cd03244          78 SRISIIPQDP-VLFS--GTIRSNLD   99 (221)
T ss_pred             hhEEEECCCC-cccc--chHHHHhC
Confidence            3466777663 3443  58888875

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.63  E-value=9e-16  Score=125.42  Aligned_cols=92  Identities=18%  Similarity=0.226  Sum_probs=71.5

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ..|+++++++.|+...+  .+++++||+|++|++++|+|+||||||||+++|+|+++   +++|++...+..        
T Consensus         5 ~~l~~~~l~~~~~~~~~--~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   79 (207)
T cd03369           5 GEIEVENLSVRYAPDLP--PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLED   79 (207)
T ss_pred             CeEEEEEEEEEeCCCCc--ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHH
Confidence            46999999999975211  36789999999999999999999999999999999998   899987543321        


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHH
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~  175 (189)
                      .+...++++|+. .++.  .++.+|+.+
T Consensus        80 ~~~~i~~v~q~~-~~~~--~tv~~~l~~  104 (207)
T cd03369          80 LRSSLTIIPQDP-TLFS--GTIRSNLDP  104 (207)
T ss_pred             HHhhEEEEecCC-cccC--ccHHHHhcc
Confidence            123467777763 4443  589998854

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.63  E-value=1.1e-15  Score=129.52  Aligned_cols=87  Identities=21%  Similarity=0.223  Sum_probs=66.8

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEE
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv  155 (189)
                      ++|+++|+++.|++  +  ..++++||+|.+||+++|+|+||||||||+++|+|+++   |++|++...+   ....+++
T Consensus         3 ~~l~~~~l~~~~~~--~--~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~---~~~i~~v   72 (251)
T PRK09544          3 SLVSLENVSVSFGQ--R--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNG---KLRIGYV   72 (251)
T ss_pred             cEEEEeceEEEECC--c--eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECC---ccCEEEe
Confidence            48999999999975  2  25779999999999999999999999999999999998   9999975443   2236667


Q ss_pred             ecCCCCCCCC-ccChhhhH
Q 029679          156 PMDGFHLYLS-QLDAMEDP  173 (189)
Q Consensus       156 ~~~~~~l~~~-~ltv~enl  173 (189)
                      +|+ ..++.. ..++.+++
T Consensus        73 ~q~-~~~~~~l~~~~~~~~   90 (251)
T PRK09544         73 PQK-LYLDTTLPLTVNRFL   90 (251)
T ss_pred             ccc-cccccccChhHHHHH
Confidence            765 333322 13555554

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.63  E-value=6.6e-16  Score=141.94  Aligned_cols=93  Identities=16%  Similarity=0.232  Sum_probs=73.8

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ++|+++|+++.|++  +  .+++|+||++++||+++|+|+||||||||+|+|+|+++   |++|.+...+..        
T Consensus         3 ~~l~~~~l~~~~~~--~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~   75 (501)
T PRK11288          3 PYLSFDGIGKTFPG--V--KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTTA   75 (501)
T ss_pred             ceEEEeeeEEEECC--E--EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHH
Confidence            58999999999975  2  35779999999999999999999999999999999998   899987543311        


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                       .+...++++|+ ..+++ .+++.+|+.++.
T Consensus        76 ~~~~~i~~v~q~-~~~~~-~~tv~~~l~~~~  104 (501)
T PRK11288         76 ALAAGVAIIYQE-LHLVP-EMTVAENLYLGQ  104 (501)
T ss_pred             HHhCCEEEEEec-hhccC-CCCHHHHHHhcc
Confidence             12345677765 44554 489999998753

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=1.6e-15  Score=128.32  Aligned_cols=97  Identities=13%  Similarity=0.161  Sum_probs=71.9

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC--CceeeccCCCC-----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVK-----  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p--~~G~i~~~~~~-----  147 (189)
                      +++|+++|+++.|+.  +  .+++|+||+|.+||+++|+|+||||||||+|+|+|++++..+  ++|++...+..     
T Consensus         5 ~~~l~~~~l~~~~~~--~--~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   80 (259)
T PRK14260          5 IPAIKVKDLSFYYNT--S--KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR   80 (259)
T ss_pred             cceEEEEEEEEEECC--e--EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc
Confidence            357999999999975  2  357799999999999999999999999999999999862101  47876433211     


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                           .+...++++|+ ..++.  +++.+|+.+...
T Consensus        81 ~~~~~~~~~i~~v~q~-~~l~~--~tv~enl~~~~~  113 (259)
T PRK14260         81 ININRLRRQIGMVFQR-PNPFP--MSIYENVAYGVR  113 (259)
T ss_pred             cchHhhhhheEEEecc-cccCC--ccHHHHHHHHHH
Confidence                 12245677765 34443  799999987643

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.63  E-value=7.6e-16  Score=123.00  Aligned_cols=88  Identities=20%  Similarity=0.232  Sum_probs=67.1

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP  149 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~  149 (189)
                      |+++|+++.|+...  ..+++++||++.+||+++|+|+||||||||+++|+|+++   +++|++...+..        .+
T Consensus         1 i~~~~l~~~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   75 (173)
T cd03246           1 LEVENVSFRYPGAE--PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGRVRLDGADISQWDPNELG   75 (173)
T ss_pred             CEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEEcccCCHHHHH
Confidence            47899999997521  236779999999999999999999999999999999998   889987443311        12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDP  173 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl  173 (189)
                      ....+++|+ ..+++  .++.+|+
T Consensus        76 ~~i~~~~q~-~~~~~--~tv~~~l   96 (173)
T cd03246          76 DHVGYLPQD-DELFS--GSIAENI   96 (173)
T ss_pred             hheEEECCC-Ccccc--CcHHHHC
Confidence            345677765 34443  4888874

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.63  E-value=2.1e-15  Score=128.67  Aligned_cols=98  Identities=14%  Similarity=0.121  Sum_probs=73.1

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC----
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----  147 (189)
                      ..++|+++|+++.|++  +  ..++|+||+|++||+++|+|+||||||||+++|+|++++.  .+++|++...+..    
T Consensus        22 ~~~~l~~~nl~~~~~~--~--~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~   97 (272)
T PRK14236         22 EQTALEVRNLNLFYGD--K--QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDK   97 (272)
T ss_pred             CCcEEEEEEEEEEECC--e--eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccc
Confidence            3468999999999975  2  2567999999999999999999999999999999998610  1378886432211    


Q ss_pred             ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                            .+....|++|+ ..++.  .++.+|+.+...
T Consensus        98 ~~~~~~~~~~i~~v~q~-~~l~~--~tv~enl~~~~~  131 (272)
T PRK14236         98 KVDVAELRRRVGMVFQR-PNPFP--KSIYENVVYGLR  131 (272)
T ss_pred             ccCHHHHhccEEEEecC-CccCc--ccHHHHHHHHHH
Confidence                  12345677765 44554  389999987654

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.63  E-value=1.5e-15  Score=141.38  Aligned_cols=91  Identities=16%  Similarity=0.078  Sum_probs=73.4

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEE
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv  155 (189)
                      .+|+++|+++.|++. +  .+++|+||+|.+|++++|+|+||||||||+|+|+|+++   |++|.+....   ....+++
T Consensus         3 ~~i~~~nls~~~~~~-~--~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~---~~~i~~v   73 (552)
T TIGR03719         3 YIYTMNRVSKVVPPK-K--EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAP---GIKVGYL   73 (552)
T ss_pred             EEEEEeeEEEecCCC-C--eeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecC---CCEEEEE
Confidence            479999999999721 2  35779999999999999999999999999999999998   8999875432   2346777


Q ss_pred             ecCCCCCCCCccChhhhHHHHH
Q 029679          156 PMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       156 ~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      +|+ ..++. .+|+.+|+.+++
T Consensus        74 ~Q~-~~~~~-~~tv~e~i~~~~   93 (552)
T TIGR03719        74 PQE-PQLDP-TKTVRENVEEGV   93 (552)
T ss_pred             ecc-CCCCC-CCcHHHHHHHhh
Confidence            765 44554 489999998753

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.63  E-value=3.8e-17  Score=135.37  Aligned_cols=98  Identities=21%  Similarity=0.292  Sum_probs=80.2

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      +.+|.++|+.|+|+.  +  .++++|||++++||++||.||||+||||.+-|+.||.+   +++|.+...+.+       
T Consensus         2 ~~~L~a~~l~K~y~k--r--~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~   74 (243)
T COG1137           2 MSTLVAENLAKSYKK--R--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH   74 (243)
T ss_pred             CcEEEehhhhHhhCC--e--eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence            457999999999987  3  34679999999999999999999999999999999999   999997544332       


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                        .+--.+|+||+ ...|.. +||.+|+...+..+.
T Consensus        75 ~RArlGigYLpQE-~SIFr~-LtV~dNi~~vlE~~~  108 (243)
T COG1137          75 KRARLGIGYLPQE-ASIFRK-LTVEDNIMAVLEIRE  108 (243)
T ss_pred             HHhhcCccccccc-chHhhc-CcHHHHHHHHHhhhh
Confidence              12235778865 667764 999999998887654

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=1.8e-15  Score=127.08  Aligned_cols=97  Identities=15%  Similarity=0.106  Sum_probs=71.2

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC--CceeeccCCCC------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVK------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p--~~G~i~~~~~~------  147 (189)
                      ++|+++|+++.|+.  +  .+++|+||+|.+||+++|+|+||||||||+++|+|+.....+  ++|++...+..      
T Consensus         2 ~~l~~~~~~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   77 (250)
T PRK14245          2 VKIDARDVNFWYGD--F--HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV   77 (250)
T ss_pred             cEEEEEEEEEEECC--E--eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc
Confidence            57999999999975  2  357799999999999999999999999999999998421113  47886433211      


Q ss_pred             ----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                          .+...+|++|+ ..++.  .++.+|+.+....
T Consensus        78 ~~~~~~~~i~~v~q~-~~~~~--~tv~~nl~~~~~~  110 (250)
T PRK14245         78 QVDELRKNVGMVFQR-PNPFP--KSIFENVAYGLRV  110 (250)
T ss_pred             cHHHHhhheEEEecC-CccCc--ccHHHHHHHHHHH
Confidence                12246777766 34443  5899999876543

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.63  E-value=8.4e-16  Score=126.38  Aligned_cols=90  Identities=18%  Similarity=0.205  Sum_probs=69.2

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP  149 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~  149 (189)
                      |+++|+++.|+...  ..+++|+||+|++|++++|+|+||||||||+++|+|+++   +++|++...+..        .+
T Consensus         3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   77 (220)
T cd03245           3 IEFRNVSFSYPNQE--IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPADLR   77 (220)
T ss_pred             EEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHHHH
Confidence            78999999996421  235779999999999999999999999999999999998   889987543321        12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~  175 (189)
                      ...++++|+ ..++.  .++.+|+.+
T Consensus        78 ~~i~~~~q~-~~~~~--~tv~e~l~~  100 (220)
T cd03245          78 RNIGYVPQD-VTLFY--GTLRDNITL  100 (220)
T ss_pred             hhEEEeCCC-Ccccc--chHHHHhhc
Confidence            345677766 34443  588888765

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.63  E-value=6.4e-16  Score=133.89  Aligned_cols=82  Identities=17%  Similarity=0.210  Sum_probs=64.3

Q ss_pred             cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CCCeEEEEecCCCCCCCCcc
Q 029679           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PPDVATVLPMDGFHLYLSQL  167 (189)
Q Consensus        95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~~~~~vv~~~~~~l~~~~l  167 (189)
                      .+|+||||+|++||++||+|+||||||||+|+|+|+++   |++|++...+..       .++..++++|+ ..+++ .+
T Consensus         7 ~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~-~~~~~-~~   81 (302)
T TIGR01188         7 KAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGIVPQY-ASVDE-DL   81 (302)
T ss_pred             eEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEEecCC-CCCCC-CC
Confidence            36789999999999999999999999999999999998   999997543321       12346777765 45555 48


Q ss_pred             ChhhhHHHHHHHcC
Q 029679          168 DAMEDPKEAHARRG  181 (189)
Q Consensus       168 tv~enl~~~~~~~g  181 (189)
                      ++.+|+.+.....+
T Consensus        82 tv~e~l~~~~~~~~   95 (302)
T TIGR01188        82 TGRENLEMMGRLYG   95 (302)
T ss_pred             cHHHHHHHHHHHcC
Confidence            99999988655443

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.63  E-value=8e-16  Score=122.66  Aligned_cols=88  Identities=20%  Similarity=0.261  Sum_probs=67.2

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP  149 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~  149 (189)
                      |+++|+++.|++..  ..+++++||++++|++++|+|+||||||||+|+|+|+++   +.+|++...+..        .+
T Consensus         1 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   75 (171)
T cd03228           1 IEFKNVSFSYPGRP--KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGEILIDGVDLRDLDLESLR   75 (171)
T ss_pred             CEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhhhcCHHHHH
Confidence            47899999997521  235789999999999999999999999999999999998   888987443321        12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDP  173 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl  173 (189)
                      ...++++++. .++.  .++.+|+
T Consensus        76 ~~i~~~~~~~-~~~~--~t~~e~l   96 (171)
T cd03228          76 KNIAYVPQDP-FLFS--GTIRENI   96 (171)
T ss_pred             hhEEEEcCCc-hhcc--chHHHHh
Confidence            2456677663 4443  5888884

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.63  E-value=5.6e-16  Score=128.99  Aligned_cols=92  Identities=17%  Similarity=0.188  Sum_probs=69.2

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP  149 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~  149 (189)
                      |+++|+++.|+... ...+++|+||++++||+++|+|+||||||||+++|+|+++   +++|++...+..        .+
T Consensus         1 l~i~~l~~~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   76 (238)
T cd03249           1 IEFKNVSFRYPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWLR   76 (238)
T ss_pred             CeEEEEEEecCCCC-CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHHH
Confidence            47899999996421 1236789999999999999999999999999999999998   899987443321        12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ...++++|+ ..++.  .++.+|+.+.
T Consensus        77 ~~i~~~~q~-~~~~~--~tv~e~l~~~  100 (238)
T cd03249          77 SQIGLVSQE-PVLFD--GTIAENIRYG  100 (238)
T ss_pred             hhEEEECCc-hhhhh--hhHHHHhhcc
Confidence            345677765 33332  5888888653

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.63  E-value=1.6e-15  Score=140.32  Aligned_cols=88  Identities=14%  Similarity=0.161  Sum_probs=71.3

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEe
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~  156 (189)
                      ||+++|+++.|++  +  .+++|+||+|.+||+++|+|+||||||||+|+|+|+++   |++|.+...+.   ...++++
T Consensus         1 ml~i~~ls~~~~~--~--~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---~~i~~~~   70 (530)
T PRK15064          1 MLSTANITMQFGA--K--PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPN---ERLGKLR   70 (530)
T ss_pred             CEEEEEEEEEeCC--c--EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEEEe
Confidence            4899999999975  2  35779999999999999999999999999999999998   88999754321   2356777


Q ss_pred             cCCCCCCCCccChhhhHHHH
Q 029679          157 MDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       157 ~~~~~l~~~~ltv~enl~~~  176 (189)
                      |+ ..++. .+++.+|+.++
T Consensus        71 q~-~~~~~-~~tv~e~l~~~   88 (530)
T PRK15064         71 QD-QFAFE-EFTVLDTVIMG   88 (530)
T ss_pred             cc-CCcCC-CCcHHHHHHHh
Confidence            65 44444 48999998864

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.62  E-value=7.1e-16  Score=123.56  Aligned_cols=88  Identities=19%  Similarity=0.191  Sum_probs=66.9

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------CCC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------PPD  150 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------~~~  150 (189)
                      |+++|+++.|+...+  .+++|+||++++||+++|+|+||||||||+|+|+|+++   +++|++...+..       .++
T Consensus         1 i~~~~~~~~~~~~~~--~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   75 (178)
T cd03247           1 LSINNVSFSYPEQEQ--QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGEITLDGVPVSDLEKALSS   75 (178)
T ss_pred             CEEEEEEEEeCCCCc--cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCEEHHHHHHHHHh
Confidence            478999999965211  25779999999999999999999999999999999998   889987544321       123


Q ss_pred             eEEEEecCCCCCCCCccChhhhH
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDP  173 (189)
Q Consensus       151 ~~~vv~~~~~~l~~~~ltv~enl  173 (189)
                      ..++++++ ..++.  .++.+|+
T Consensus        76 ~i~~~~q~-~~~~~--~tv~~~i   95 (178)
T cd03247          76 LISVLNQR-PYLFD--TTLRNNL   95 (178)
T ss_pred             hEEEEccC-Ceeec--ccHHHhh
Confidence            45677765 34443  5888875

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=2.1e-15  Score=129.04  Aligned_cols=97  Identities=19%  Similarity=0.162  Sum_probs=72.0

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC----
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----  147 (189)
                      ..++|+++|+++.|+.  +  .+++++||+|.+||+++|+|+||||||||+++|+|++.+.  .+++|.+...+..    
T Consensus        17 ~~~~l~~~nl~~~~~~--~--~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~   92 (274)
T PRK14265         17 DHSVFEVEGVKVFYGG--F--LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS   92 (274)
T ss_pred             CCceEEEeeEEEEeCC--e--EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccc
Confidence            4468999999999975  2  3577999999999999999999999999999999998521  1257876433211    


Q ss_pred             ------CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                            .+...+|++|+ ..++.  .++.+|+.+..
T Consensus        93 ~~~~~~~~~~i~~v~q~-~~l~~--~tv~~nl~~~~  125 (274)
T PRK14265         93 QINSVKLRRQVGMVFQR-PNPFP--KSIYENIAFAP  125 (274)
T ss_pred             cchhHHHhhcEEEEccC-Ccccc--ccHHHHHHhHH
Confidence                  12345677766 34443  48999998754

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.62  E-value=8.7e-16  Score=127.00  Aligned_cols=91  Identities=23%  Similarity=0.305  Sum_probs=69.9

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++|+++.|+.. +  ..++|+||++.+|++++|+|+||||||||+++|+|+++   +++|++...+..        .
T Consensus         2 ~l~~~~l~~~~~~~-~--~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   75 (229)
T cd03254           2 EIEFENVNFSYDEK-K--PVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSL   75 (229)
T ss_pred             eEEEEEEEEecCCC-C--ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHH
Confidence            37899999999642 1  25779999999999999999999999999999999998   899987544321        1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++..+|++++ ..++.  .++.+|+.+.
T Consensus        76 ~~~i~~~~q~-~~~~~--~tv~~~~~~~  100 (229)
T cd03254          76 RSMIGVVLQD-TFLFS--GTIMENIRLG  100 (229)
T ss_pred             hhhEEEecCC-chhhh--hHHHHHHhcc
Confidence            2345677765 34443  4788887653

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.62  E-value=2e-15  Score=125.65  Aligned_cols=92  Identities=15%  Similarity=0.247  Sum_probs=71.7

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCCe
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDV  151 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~~  151 (189)
                      |+++|+++.|+.  +  ..++++||++.+|++++|+|+||||||||+++|+|+++   +.+|.+...+..      .+..
T Consensus         1 l~~~~l~~~~~~--~--~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (232)
T cd03300           1 IELENVSKFYGG--F--VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP   73 (232)
T ss_pred             CEEEeEEEEeCC--e--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence            468999999975  2  35779999999999999999999999999999999998   888986443221      1234


Q ss_pred             EEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          152 ATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       152 ~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      .++++++ ...+. .+++.+|+.+...
T Consensus        74 i~~~~q~-~~~~~-~~t~~~nl~~~~~   98 (232)
T cd03300          74 VNTVFQN-YALFP-HLTVFENIAFGLR   98 (232)
T ss_pred             eEEEecc-cccCC-CCcHHHHHHHHHH
Confidence            6677765 44444 3799999987654

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.62  E-value=2.1e-15  Score=126.49  Aligned_cols=94  Identities=15%  Similarity=0.097  Sum_probs=69.5

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHh--hcccCCCceeeccCCCC-----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVK-----  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl--~~~~~p~~G~i~~~~~~-----  147 (189)
                      .++|+++++++.|++  +  .++++|||++++||+++|+|+||||||||+++|+|+  ++   +++|++...+..     
T Consensus         5 ~~~l~~~~l~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~   77 (252)
T CHL00131          5 KPILEIKNLHASVNE--N--EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDLE   77 (252)
T ss_pred             CceEEEEeEEEEeCC--E--EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccCC
Confidence            357999999999975  2  367899999999999999999999999999999998  45   788886433211     


Q ss_pred             ---CCC-eEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 ---PPD-VATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 ---~~~-~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                         ... ...+++|+ ..+++ .+++.+|+.+..
T Consensus        78 ~~~~~~~~~~~~~q~-~~~~~-~~~~~~~l~~~~  109 (252)
T CHL00131         78 PEERAHLGIFLAFQY-PIEIP-GVSNADFLRLAY  109 (252)
T ss_pred             hhhhheeeEEEEecc-ccccc-cccHHHHHHHhh
Confidence               111 23455654 44444 367888876543

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.62  E-value=2.5e-15  Score=129.44  Aligned_cols=98  Identities=13%  Similarity=0.127  Sum_probs=73.2

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc--ccCCCceeeccCCCC----
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVK----  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~--~~~p~~G~i~~~~~~----  147 (189)
                      ..++|+++|+++.|+.  +  ..++|+||+|.+||+++|+|+||||||||+++|+|+..  +..+++|++...+..    
T Consensus        36 ~~~~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~  111 (286)
T PRK14275         36 GKPHVVAKNFSIYYGE--F--EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK  111 (286)
T ss_pred             CceEEEEeeeEEEECC--E--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence            4568999999999975  2  25679999999999999999999999999999999863  111378886433211    


Q ss_pred             ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                            .+...+|++|+ ..++.  .++.+|+.+...
T Consensus       112 ~~~~~~~~~~i~~v~q~-~~l~~--~tv~enl~~~~~  145 (286)
T PRK14275        112 FTDEVLLRKKIGMVFQK-PNPFP--KSIFDNIAYGPR  145 (286)
T ss_pred             ccchHHhhhcEEEECCC-CCCCc--cCHHHHHHhHHH
Confidence                  12346677766 34443  499999988654

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.62  E-value=6.3e-16  Score=146.83  Aligned_cols=92  Identities=20%  Similarity=0.206  Sum_probs=74.3

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++||++.|+...+  .+|+|+||+|++||.++|+|+||||||||+|+|+|++.   |++|++..++..        .
T Consensus       451 ~I~~~nvsf~Y~~~~~--~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l  525 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGP--LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV  525 (686)
T ss_pred             eEEEEEEEEEcCCCCc--cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence            5999999999964222  35779999999999999999999999999999999999   999997544422        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++..++++|+ ..++.  .|++||+.++
T Consensus       526 r~~i~~v~Q~-~~lf~--gTI~eNi~~~  550 (686)
T TIGR03797       526 RRQLGVVLQN-GRLMS--GSIFENIAGG  550 (686)
T ss_pred             HhccEEEccC-CccCc--ccHHHHHhcC
Confidence            3457888877 44554  5899999764

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.62  E-value=1.6e-15  Score=134.49  Aligned_cols=86  Identities=10%  Similarity=0.087  Sum_probs=67.4

Q ss_pred             eeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------------CC
Q 029679           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------------PP  149 (189)
Q Consensus        82 ~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------------~~  149 (189)
                      |+++.|++  .   .+ ++||++.+||+++|+|+||||||||+|+|+|+++   |++|++...+..            .+
T Consensus         4 ~l~~~~~~--~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~   74 (354)
T TIGR02142         4 RFSKRLGD--F---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK   74 (354)
T ss_pred             EEEEEECC--E---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence            79999975  2   23 8999999999999999999999999999999998   899986432211            12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      +..++++|+ ..+++. +++.+|+.+++.
T Consensus        75 ~~i~~v~q~-~~l~~~-~tv~enl~~~~~  101 (354)
T TIGR02142        75 RRIGYVFQE-ARLFPH-LSVRGNLRYGMK  101 (354)
T ss_pred             CCeEEEecC-CccCCC-CcHHHHHHHHhh
Confidence            345677765 566664 899999988653

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.62  E-value=2.3e-15  Score=125.78  Aligned_cols=93  Identities=16%  Similarity=0.189  Sum_probs=72.0

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCCe
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDV  151 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~~  151 (189)
                      |+++|+++.|+.  +  ..++|+||++.+||+++|+|+||||||||+++|+|+++   +++|++...+..      .++.
T Consensus         1 i~i~~l~~~~~~--~--~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~   73 (237)
T TIGR00968         1 IEIANISKRFGS--F--QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK   73 (237)
T ss_pred             CEEEEEEEEECC--e--eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence            478999999975  3  35779999999999999999999999999999999998   889986433211      1234


Q ss_pred             EEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          152 ATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       152 ~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      ..+++++ ...+. .+++.+|+.+....
T Consensus        74 i~~~~q~-~~~~~-~~t~~enl~~~~~~   99 (237)
T TIGR00968        74 IGFVFQH-YALFK-HLTVRDNIAFGLEI   99 (237)
T ss_pred             EEEEecC-hhhcc-CCcHHHHHHhHHHh
Confidence            5677765 44554 37999999876543

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.61  E-value=4.3e-16  Score=136.35  Aligned_cols=104  Identities=16%  Similarity=0.187  Sum_probs=84.5

Q ss_pred             CeEEEeeeEEEcCccc--------------------eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccC
Q 029679           76 PVVEARCMDEVYDALA--------------------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW  135 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~--------------------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~  135 (189)
                      ..|+++|++|.|+...                    ..+..|+|+||+|++|||+.|.|-||||||||+|+|.+|.+   
T Consensus         3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie---   79 (386)
T COG4175           3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE---   79 (386)
T ss_pred             ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC---
Confidence            4589999999996420                    12456889999999999999999999999999999999999   


Q ss_pred             CCceeeccCCCC------------CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCCC
Q 029679          136 PQKASSFDSQVK------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV  184 (189)
Q Consensus       136 p~~G~i~~~~~~------------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~~  184 (189)
                      |+.|.+...+.+            +++...++|| .|.++++ .||.+|..|++..+|.+.
T Consensus        80 pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ-~FaLlPh-rtVl~Nv~fGLev~Gv~~  138 (386)
T COG4175          80 PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQ-SFALLPH-RTVLENVAFGLEVQGVPK  138 (386)
T ss_pred             CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhh-hhccccc-hhHhhhhhcceeecCCCH
Confidence            999997544332            2344556665 5999984 999999999998888764

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.61  E-value=4e-15  Score=126.50  Aligned_cols=97  Identities=13%  Similarity=0.156  Sum_probs=73.0

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK-----  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~-----  147 (189)
                      .+.+.++++++.|+.  .  .+++|+||++++||+++|+|+||||||||+++|+|++++.  .+.+|++...+..     
T Consensus         6 ~~~~~~~~~~~~~~~--~--~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~   81 (261)
T PRK14263          6 PIVMDCKLDKIFYGN--F--MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG   81 (261)
T ss_pred             CceEEEEeEEEEeCC--E--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccc
Confidence            357999999999975  2  3577999999999999999999999999999999999721  1268886433211     


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                           .++..++++|+ ..++ . +++.+|+.+...
T Consensus        82 ~~~~~~~~~i~~v~q~-~~~~-~-~tv~enl~~~~~  114 (261)
T PRK14263         82 VDPVVVRRYIGMVFQQ-PNPF-S-MSIFDNVAFGLR  114 (261)
T ss_pred             cchHhhhhceEEEecC-Cccc-c-ccHHHHHHHHHh
Confidence                 12346777766 3444 2 899999987654

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.61  E-value=3.9e-15  Score=124.90  Aligned_cols=96  Identities=13%  Similarity=0.167  Sum_probs=71.6

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc--ccCCCceeeccCCCC------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVK------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~--~~~p~~G~i~~~~~~------  147 (189)
                      -+|+++|+++.|++  +  .+++|+||+|.+||+++|+|+||||||||+++|+|++.  +..+++|++...+..      
T Consensus         2 ~~l~~~~v~~~~~~--~--~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~   77 (250)
T PRK14266          2 YRIEVENLNTYFDD--A--HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV   77 (250)
T ss_pred             cEEEEEeEEEEeCC--e--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence            46899999999975  2  25779999999999999999999999999999999874  112478886433211      


Q ss_pred             ----CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                          .+...++++|+ ..++.  .++.+|+.+...
T Consensus        78 ~~~~~~~~i~~~~q~-~~~~~--~t~~~nl~~~~~  109 (250)
T PRK14266         78 DVVELRKKVGMVFQK-PNPFP--KSIFDNVAYGLR  109 (250)
T ss_pred             cHHHHhhheEEEecC-CccCc--chHHHHHHhHHh
Confidence                12346777866 34444  489999987643

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.61  E-value=3.6e-15  Score=126.39  Aligned_cols=93  Identities=14%  Similarity=0.195  Sum_probs=70.0

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCC-----ceeeccCCCC---
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KASSFDSQVK---  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~-----~G~i~~~~~~---  147 (189)
                      ++|+++|+++.|+.  +  .+++|+||++++||+++|+|+||||||||+++|+|+++   ++     +|.+...+..   
T Consensus         6 ~~l~~~nl~~~~~~--~--~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~~   78 (261)
T PRK14258          6 PAIKVNNLSFYYDT--Q--KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIYE   78 (261)
T ss_pred             ceEEEeeEEEEeCC--e--eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhhc
Confidence            47999999999975  2  35779999999999999999999999999999999997   53     5665322211   


Q ss_pred             -------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                             .+....+++++ ..+++  +++.+|+.+...
T Consensus        79 ~~~~~~~~~~~i~~~~q~-~~l~~--~tv~enl~~~~~  113 (261)
T PRK14258         79 RRVNLNRLRRQVSMVHPK-PNLFP--MSVYDNVAYGVK  113 (261)
T ss_pred             cccchHHhhccEEEEecC-CccCc--ccHHHHHHHHHH
Confidence                   12335666765 34443  689999987643

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.61  E-value=4.7e-15  Score=125.84  Aligned_cols=97  Identities=14%  Similarity=0.069  Sum_probs=71.6

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccC--CCceeeccCCCC-----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW--PQKASSFDSQVK-----  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~--p~~G~i~~~~~~-----  147 (189)
                      ..+|+++|+++.|+.  +  .+++|+||+|++||+++|+|+||||||||+++|+|++.+.-  +++|++...+..     
T Consensus        14 ~~~l~~~~l~~~~~~--~--~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~   89 (265)
T PRK14252         14 QQKSEVNKLNFYYGG--Y--QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS   89 (265)
T ss_pred             CceEEEEEEEEEECC--e--eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc
Confidence            357999999999975  2  35779999999999999999999999999999999986210  167876332110     


Q ss_pred             -------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                             .+...++++++ ..++.  .++.+|+.+...
T Consensus        90 ~~~~~~~~~~~i~~~~q~-~~~~~--~tv~eni~~~~~  124 (265)
T PRK14252         90 PEVDPIEVRMRISMVFQK-PNPFP--KSIFENVAYGLR  124 (265)
T ss_pred             cccCHHHHhccEEEEccC-CcCCc--chHHHHHHhHHH
Confidence                   12345677765 44444  489999987654

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=1.8e-15  Score=143.06  Aligned_cols=96  Identities=20%  Similarity=0.213  Sum_probs=78.5

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      -.|+++||++.|+.. ..+..++|+||+|++||++|||||||+||||++.+|..++.   |++|+|...+.+        
T Consensus       464 G~IeF~~VsFaYP~R-p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~~~~  539 (716)
T KOG0058|consen  464 GVIEFEDVSFAYPTR-PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDINHKY  539 (716)
T ss_pred             ceEEEEEeeeecCCC-CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcCHHH
Confidence            369999999999874 34567889999999999999999999999999999999999   999998554432        


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      .++.+++|.|+ .-+|.  -++.|||.++..
T Consensus       540 lr~~Ig~V~QE-PvLFs--~sI~eNI~YG~~  567 (716)
T KOG0058|consen  540 LRRKIGLVGQE-PVLFS--GSIRENIAYGLD  567 (716)
T ss_pred             HHHHeeeeecc-ceeec--ccHHHHHhcCCC
Confidence            24566777765 55554  589999988653

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.60  E-value=3.1e-15  Score=139.43  Aligned_cols=92  Identities=22%  Similarity=0.224  Sum_probs=74.2

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEE
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~v  154 (189)
                      .++|+++|+++.|++  +  .+++||||+|.+||+++|+|+||||||||+|+|+|+++   |++|++..+..   ...+|
T Consensus       322 ~~~l~~~~l~~~~~~--~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~  391 (556)
T PRK11819        322 DKVIEAENLSKSFGD--R--LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGET---VKLAY  391 (556)
T ss_pred             CeEEEEEeEEEEECC--e--eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEE
Confidence            458999999999975  2  35779999999999999999999999999999999998   99999865321   13677


Q ss_pred             EecCCCCCCCCccChhhhHHHHH
Q 029679          155 LPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       155 v~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      ++|+...++. .+++.+|+.+..
T Consensus       392 v~q~~~~~~~-~~tv~e~l~~~~  413 (556)
T PRK11819        392 VDQSRDALDP-NKTVWEEISGGL  413 (556)
T ss_pred             EeCchhhcCC-CCCHHHHHHhhc
Confidence            7876323444 489999998754

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.60  E-value=1.8e-15  Score=125.66  Aligned_cols=90  Identities=19%  Similarity=0.189  Sum_probs=69.3

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP  149 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~  149 (189)
                      |+++|+++.|++. +  ..++|+||+|.+|++++|+|+||||||||+++|+|+++   +++|++...+..        .+
T Consensus         1 l~~~~l~~~~~~~-~--~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~~   74 (236)
T cd03253           1 IEFENVTFAYDPG-R--PVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSLR   74 (236)
T ss_pred             CEEEEEEEEeCCC-C--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHHH
Confidence            4789999999632 2  25779999999999999999999999999999999998   899987543321        12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      +..++++++ ..++.  .++.+|+.+.
T Consensus        75 ~~i~~~~q~-~~~~~--~tv~~nl~~~   98 (236)
T cd03253          75 RAIGVVPQD-TVLFN--DTIGYNIRYG   98 (236)
T ss_pred             hhEEEECCC-Chhhc--chHHHHHhhc
Confidence            345677766 34443  5899998764

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.60  E-value=1.2e-15  Score=145.36  Aligned_cols=92  Identities=20%  Similarity=0.201  Sum_probs=74.7

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++||++.|+...+  .+|+|+||+|++||.++|+|+||||||||+++|+|+++   |++|++..++..        .
T Consensus       477 ~I~~~~vsf~y~~~~~--~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l  551 (710)
T TIGR03796       477 YVELRNITFGYSPLEP--PLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVL  551 (710)
T ss_pred             eEEEEEEEEecCCCCC--CcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHHH
Confidence            5999999999975322  35789999999999999999999999999999999999   999998554432        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++..++++|+ ..++.  .|++||+.+.
T Consensus       552 r~~i~~v~Q~-~~lf~--gTi~eNi~l~  576 (710)
T TIGR03796       552 ANSVAMVDQD-IFLFE--GTVRDNLTLW  576 (710)
T ss_pred             HhheeEEecC-Chhhh--ccHHHHhhCC
Confidence            4567888877 44453  5899999753

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.60  E-value=2e-15  Score=138.51  Aligned_cols=92  Identities=18%  Similarity=0.196  Sum_probs=71.6

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC--CceeeccCCCC-------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVK-------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p--~~G~i~~~~~~-------  147 (189)
                      +|+++|+++.|++  +  .+++||||++.+||+++|+|+||||||||+++|+|+++   +  ++|.+...+..       
T Consensus         1 ~l~i~~l~~~~~~--~--~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~   73 (500)
T TIGR02633         1 LLEMKGIVKTFGG--V--KALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR   73 (500)
T ss_pred             CEEEEeEEEEeCC--e--EeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence            4899999999975  2  35779999999999999999999999999999999987   5  68887443211       


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                        .+...++++|+ ..++. .+++.+|+.+..
T Consensus        74 ~~~~~~i~~v~q~-~~~~~-~~tv~~~l~~~~  103 (500)
T TIGR02633        74 DTERAGIVIIHQE-LTLVP-ELSVAENIFLGN  103 (500)
T ss_pred             HHHhCCEEEEeec-cccCC-CCcHHHHHHhhc
Confidence              12336777776 34554 489999988754

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.60  E-value=3.4e-15  Score=138.90  Aligned_cols=92  Identities=22%  Similarity=0.211  Sum_probs=74.1

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEE
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~v  154 (189)
                      .++|+++|+++.|++  +  ..++|+||+|.+|++++|+|+||||||||+++|+|+++   |++|.+..+..   ...+|
T Consensus       320 ~~~l~~~~l~~~~~~--~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~~---~~i~~  389 (552)
T TIGR03719       320 DKVIEAENLSKGFGD--K--LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGET---VKLAY  389 (552)
T ss_pred             CeEEEEeeEEEEECC--e--eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECCc---eEEEE
Confidence            468999999999975  2  35779999999999999999999999999999999998   89999855321   13677


Q ss_pred             EecCCCCCCCCccChhhhHHHHH
Q 029679          155 LPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       155 v~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      ++|+...+++ .+++.+|+.+..
T Consensus       390 v~q~~~~~~~-~~tv~e~l~~~~  411 (552)
T TIGR03719       390 VDQSRDALDP-NKTVWEEISGGL  411 (552)
T ss_pred             EeCCccccCC-CCcHHHHHHhhc
Confidence            7876323444 489999998754

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.60  E-value=3.2e-15  Score=138.24  Aligned_cols=102  Identities=10%  Similarity=0.084  Sum_probs=72.0

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc--cCCCceeeccCCCC------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASSFDSQVK------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~--~~p~~G~i~~~~~~------  147 (189)
                      ++|+++|+++.|+.......+++||||+|.+||+++|+|+||||||||+|+|+|++++  ..+++|++...+..      
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~   83 (529)
T PRK15134          4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE   83 (529)
T ss_pred             ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence            5899999999996311112467899999999999999999999999999999999972  11268886433211      


Q ss_pred             ------CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                            +....++++|+....+...+++.+|+.+..
T Consensus        84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~  119 (529)
T PRK15134         84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVL  119 (529)
T ss_pred             HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHH
Confidence                  113467888764321222367888876543

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.60  E-value=3e-15  Score=138.03  Aligned_cols=95  Identities=17%  Similarity=0.234  Sum_probs=71.6

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh--cccCCCceeeccC-----------
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDS-----------  144 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~--~~~~p~~G~i~~~-----------  144 (189)
                      |+++|+++.|++  +  .+++|+||++.+|++++|+|+||||||||+|+|+|++  +   |++|++...           
T Consensus         1 l~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~   73 (520)
T TIGR03269         1 IEVKNLTKKFDG--K--EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVE   73 (520)
T ss_pred             CEEEEEEEEECC--e--EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEeccccccccccc
Confidence            578999999965  2  3577999999999999999999999999999999996  5   778886321           


Q ss_pred             ------------CC------------C------CCCeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679          145 ------------QV------------K------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (189)
Q Consensus       145 ------------~~------------~------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~  180 (189)
                                  +.            .      .++..++++|+...++. .+++++|+.+.+...
T Consensus        74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~~~l~~~~~~~  138 (520)
T TIGR03269        74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYG-DDTVLDNVLEALEEI  138 (520)
T ss_pred             cccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCC-CCCHHHHHHHHHHHc
Confidence                        10            0      12235777775345555 379999998866443

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.60  E-value=4.7e-15  Score=140.31  Aligned_cols=92  Identities=16%  Similarity=0.180  Sum_probs=73.5

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEE
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT  153 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~  153 (189)
                      ..++|+++|+++.|++  +  ..++|+||+|.+|++++|+|+||||||||+|+|+|+++   |++|.+..+..   -..+
T Consensus       316 ~~~~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~i~  385 (635)
T PRK11147        316 GKIVFEMENVNYQIDG--K--QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHCGTK---LEVA  385 (635)
T ss_pred             CCceEEEeeeEEEECC--e--EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCC---cEEE
Confidence            3468999999999975  2  25679999999999999999999999999999999998   99999865321   1356


Q ss_pred             EEecCCCCCCCCccChhhhHHHH
Q 029679          154 VLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       154 vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      |++|+...+++ .+++.+|+.+.
T Consensus       386 y~~q~~~~l~~-~~tv~e~l~~~  407 (635)
T PRK11147        386 YFDQHRAELDP-EKTVMDNLAEG  407 (635)
T ss_pred             EEeCcccccCC-CCCHHHHHHhh
Confidence            67765333444 48999998764

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.60  E-value=2.7e-15  Score=128.03  Aligned_cols=76  Identities=14%  Similarity=0.102  Sum_probs=60.9

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----CCCe
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDV  151 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~~~~  151 (189)
                      +|+++|+++.|++. +  .+++|+||+|.+||+++|+|+||||||||+|+|+|+++   |++|++...+..     ....
T Consensus         6 ~l~~~~l~~~~~~~-~--~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~   79 (272)
T PRK15056          6 GIVVNDVTVTWRNG-H--TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKNL   79 (272)
T ss_pred             eEEEEeEEEEecCC-c--EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccce
Confidence            69999999999632 2  25679999999999999999999999999999999998   899987443321     1234


Q ss_pred             EEEEecC
Q 029679          152 ATVLPMD  158 (189)
Q Consensus       152 ~~vv~~~  158 (189)
                      .+|++|+
T Consensus        80 i~~v~q~   86 (272)
T PRK15056         80 VAYVPQS   86 (272)
T ss_pred             EEEeccc
Confidence            5677765

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.60  E-value=4.9e-15  Score=137.06  Aligned_cols=90  Identities=16%  Similarity=0.159  Sum_probs=71.5

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEE
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv  155 (189)
                      ++|+++|+++.|++  +  .+++++||+|++||+++|+|+||||||||+|+|+|+++   |++|.+...+   ....+|+
T Consensus       318 ~~l~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~---~~~i~~~  387 (530)
T PRK15064        318 NALEVENLTKGFDN--G--PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSE---NANIGYY  387 (530)
T ss_pred             ceEEEEeeEEeeCC--c--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECC---ceEEEEE
Confidence            58999999999975  2  25679999999999999999999999999999999998   9999975433   2346777


Q ss_pred             ecCCCCCCCCccChhhhHHH
Q 029679          156 PMDGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus       156 ~~~~~~l~~~~ltv~enl~~  175 (189)
                      +|+....+...+++.+|+.+
T Consensus       388 ~q~~~~~~~~~~t~~~~~~~  407 (530)
T PRK15064        388 AQDHAYDFENDLTLFDWMSQ  407 (530)
T ss_pred             cccccccCCCCCcHHHHHHH
Confidence            77633223334788888754

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.60  E-value=3.5e-15  Score=137.65  Aligned_cols=99  Identities=19%  Similarity=0.339  Sum_probs=74.5

Q ss_pred             CCCeEEEeeeEEEcCcc-ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc--CCC----
Q 029679           74 EIPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD--SQV----  146 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~-~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~--~~~----  146 (189)
                      ..++|+++|+++.|+.. .....+++|+||+|++||+++|+|+||||||||+|+|+|+++   |++|++..  +..    
T Consensus       276 ~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~~  352 (520)
T TIGR03269       276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVDM  352 (520)
T ss_pred             CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCccccc
Confidence            34689999999999531 011235789999999999999999999999999999999998   88999743  221    


Q ss_pred             C---------CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          147 K---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       147 ~---------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      .         .+...+|++|+ ..+++ .+++.+|+.+.+
T Consensus       353 ~~~~~~~~~~~~~~i~~v~q~-~~l~~-~~tv~e~l~~~~  390 (520)
T TIGR03269       353 TKPGPDGRGRAKRYIGILHQE-YDLYP-HRTVLDNLTEAI  390 (520)
T ss_pred             cccchhhHHHHhhhEEEEccC-cccCC-CCcHHHHHHHHH
Confidence            0         01235677765 45555 489999998653

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.59  E-value=6.5e-15  Score=127.99  Aligned_cols=98  Identities=15%  Similarity=0.114  Sum_probs=73.7

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC----
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK----  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~----  147 (189)
                      ..++|+++|+++.|+.  +  .+|+++||+|.+||+++|+|+||||||||+++|+|++.+.  .+++|++...+..    
T Consensus        42 ~~~~l~i~nl~~~~~~--~--~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~  117 (305)
T PRK14264         42 GDAKLSVEDLDVYYGD--D--HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD  117 (305)
T ss_pred             CCceEEEEEEEEEeCC--e--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence            3457999999999975  2  3678999999999999999999999999999999998521  1478886433211    


Q ss_pred             ------CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 ------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                            .+...+|++|+ ..+++  .++.+|+.+...
T Consensus       118 ~~~~~~~~~~i~~v~q~-~~l~~--~tv~enl~~~~~  151 (305)
T PRK14264        118 GVNLVELRKRVGMVFQS-PNPFP--KSIRENISYGPR  151 (305)
T ss_pred             cccHHHHhhceEEEccC-Ccccc--ccHHHHHHhHHh
Confidence                  12345677765 44554  499999987653

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.59  E-value=1.8e-15  Score=140.82  Aligned_cols=92  Identities=17%  Similarity=0.189  Sum_probs=74.1

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++|+++.|++..+  ..++|+||+|++|+.++|+|+||||||||+++|+|+++   |++|++..++..        .
T Consensus       341 ~i~~~~vsf~y~~~~~--~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~  415 (582)
T PRK11176        341 DIEFRNVTFTYPGKEV--PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL  415 (582)
T ss_pred             eEEEEEEEEecCCCCC--ccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence            5999999999965322  35779999999999999999999999999999999999   999998554432        1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++...+++|+ ..++.  .|+.+|+.++
T Consensus       416 ~~~i~~v~Q~-~~lf~--~Ti~~Ni~~~  440 (582)
T PRK11176        416 RNQVALVSQN-VHLFN--DTIANNIAYA  440 (582)
T ss_pred             HhhceEEccC-ceeec--chHHHHHhcC
Confidence            3456788877 44554  5899999764

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.59  E-value=2.2e-15  Score=138.82  Aligned_cols=92  Identities=24%  Similarity=0.239  Sum_probs=73.9

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++||++.|++..+  ..++|+||++++|+.++|+|+||||||||+++|+|+++   |++|.+..++..        .
T Consensus       320 ~i~~~~v~f~y~~~~~--~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l  394 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRA--PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW  394 (529)
T ss_pred             eEEEEEEEEECCCCCc--ccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence            5999999999976322  35789999999999999999999999999999999999   999997544332        1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++..++++|+ ..++.  .|+.+|+.++
T Consensus       395 r~~i~~v~Q~-~~lf~--~ti~~Ni~~~  419 (529)
T TIGR02857       395 RDQIAWVPQH-PFLFA--GTIAENIRLA  419 (529)
T ss_pred             HhheEEEcCC-CcccC--cCHHHHHhcc
Confidence            3356788877 44553  5899998764

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.59  E-value=2e-15  Score=144.33  Aligned_cols=94  Identities=19%  Similarity=0.203  Sum_probs=74.9

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ..|+++||++.|++.. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++   |++|++..++..        
T Consensus       477 ~~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~  552 (711)
T TIGR00958       477 GLIEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHY  552 (711)
T ss_pred             CeEEEEEEEEECCCCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence            3599999999997521 1235789999999999999999999999999999999999   999998544422        


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      .++...+++|+ ..++.  .|++||+.++
T Consensus       553 lr~~i~~v~Q~-~~lF~--gTIreNI~~g  578 (711)
T TIGR00958       553 LHRQVALVGQE-PVLFS--GSVRENIAYG  578 (711)
T ss_pred             HHhhceEEecC-ccccc--cCHHHHHhcC
Confidence            23456788877 44553  5899999875

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.59  E-value=1.7e-15  Score=144.41  Aligned_cols=91  Identities=15%  Similarity=0.134  Sum_probs=74.4

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++||++.|+.. +  .+|+|+||+|++|+.++|+|+||||||||+++|+|++.   |++|++..++..        .
T Consensus       473 ~I~~~~vsf~y~~~-~--~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l  546 (708)
T TIGR01193       473 DIVINDVSYSYGYG-S--NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHTL  546 (708)
T ss_pred             cEEEEEEEEEcCCC-C--cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHHH
Confidence            59999999999742 2  35789999999999999999999999999999999998   999998554432        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++..++++|+ ..++.  .|++||+.+.
T Consensus       547 r~~i~~v~Q~-~~lf~--gTI~eNi~l~  571 (708)
T TIGR01193       547 RQFINYLPQE-PYIFS--GSILENLLLG  571 (708)
T ss_pred             HHheEEEecC-ceehh--HHHHHHHhcc
Confidence            3457888877 44554  5899999875

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.59  E-value=5.2e-15  Score=121.47  Aligned_cols=87  Identities=16%  Similarity=0.214  Sum_probs=66.3

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----------  147 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----------  147 (189)
                      +.+ +|+|.|++.  .   + ||||+|++ |+++|+|+||||||||+++|+|+++   |++|++...+..          
T Consensus         2 ~~~-~l~~~~~~~--~---~-~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   70 (214)
T cd03297           2 LCV-DIEKRLPDF--T---L-KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINL   70 (214)
T ss_pred             cee-eeeEecCCe--e---e-CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhh
Confidence            344 899999872  2   3 99999999 9999999999999999999999998   889986433211          


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                        .++..++++|+ ..+++ .+++.+|+.+..
T Consensus        71 ~~~~~~i~~~~q~-~~~~~-~~t~~~~l~~~~  100 (214)
T cd03297          71 PPQQRKIGLVFQQ-YALFP-HLNVRENLAFGL  100 (214)
T ss_pred             hhHhhcEEEEecC-CccCC-CCCHHHHHHHHH
Confidence              12245677765 44554 379999998754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.59  E-value=3.6e-15  Score=120.38  Aligned_cols=79  Identities=19%  Similarity=0.155  Sum_probs=59.9

Q ss_pred             ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----------CCCeEEEEecCCCCCCCC
Q 029679           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----------PPDVATVLPMDGFHLYLS  165 (189)
Q Consensus        96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----------~~~~~~vv~~~~~~l~~~  165 (189)
                      ++++|||+|.+||+++|+|+||||||||+++|+|+++   +++|.+...+..          .++..++++|+.......
T Consensus         7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~   83 (190)
T TIGR01166         7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA   83 (190)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence            5789999999999999999999999999999999998   889987433211          122356777764222222


Q ss_pred             ccChhhhHHHHHH
Q 029679          166 QLDAMEDPKEAHA  178 (189)
Q Consensus       166 ~ltv~enl~~~~~  178 (189)
                       .++.+|+.+...
T Consensus        84 -~tv~~nl~~~~~   95 (190)
T TIGR01166        84 -ADVDQDVAFGPL   95 (190)
T ss_pred             -ccHHHHHHHHHH
Confidence             689999987643

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.58  E-value=1.2e-14  Score=125.53  Aligned_cols=87  Identities=10%  Similarity=0.062  Sum_probs=69.0

Q ss_pred             CCCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeE
Q 029679           73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA  152 (189)
Q Consensus        73 ~~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~  152 (189)
                      ...+.|+++|+++.  .  +  .+++++||+|.+||+++|+|+||||||||+++|+|+++   |++|++...+     ..
T Consensus        35 ~~~~~l~i~nls~~--~--~--~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g-----~i  100 (282)
T cd03291          35 SDDNNLFFSNLCLV--G--A--PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG-----RI  100 (282)
T ss_pred             CCCCeEEEEEEEEe--c--c--cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC-----EE
Confidence            34567999999985  2  2  35779999999999999999999999999999999998   8999975443     35


Q ss_pred             EEEecCCCCCCCCccChhhhHHHH
Q 029679          153 TVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       153 ~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      +|++|+ ..++.  .++.+|+.+.
T Consensus       101 ~yv~q~-~~l~~--~tv~enl~~~  121 (282)
T cd03291         101 SFSSQF-SWIMP--GTIKENIIFG  121 (282)
T ss_pred             EEEeCc-ccccc--cCHHHHhhcc
Confidence            667765 33443  4888887753

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.58  E-value=5.9e-15  Score=121.47  Aligned_cols=89  Identities=12%  Similarity=0.065  Sum_probs=68.0

Q ss_pred             EEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----------
Q 029679           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----------  147 (189)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----------  147 (189)
                      .+.++.+.|+..   ..+++++||+|++||+++|+|+||||||||+++|+|+++   +++|++...+..           
T Consensus         2 ~~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~   75 (218)
T cd03290           2 QVTNGYFSWGSG---LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS   75 (218)
T ss_pred             eeeeeEEecCCC---CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence            578899999753   235789999999999999999999999999999999998   889986443211           


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                       .++..++++|+. .++.  .++.+|+.+.
T Consensus        76 ~~~~~i~~~~q~~-~~~~--~t~~~nl~~~  102 (218)
T cd03290          76 RNRYSVAYAAQKP-WLLN--ATVEENITFG  102 (218)
T ss_pred             hhcceEEEEcCCC-cccc--ccHHHHHhhc
Confidence             123456777653 3442  6899998764

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.58  E-value=8e-15  Score=123.23  Aligned_cols=93  Identities=11%  Similarity=0.091  Sum_probs=69.0

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc--ccCCCceeeccCCCC--------
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKASSFDSQVK--------  147 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~--~~~p~~G~i~~~~~~--------  147 (189)
                      -+++|+++.|+.  +  .+++|+||+|.+||+++|+|+||||||||+++|+|+..  +..+++|++...+..        
T Consensus         6 ~~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   81 (251)
T PRK14244          6 ASVKNLNLWYGS--K--QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV   81 (251)
T ss_pred             EEeeeEEEEECC--e--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence            478999999974  2  35779999999999999999999999999999999975  111468886433211        


Q ss_pred             --CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 --~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                        .++..+|++|+ ..+++  .++.+|+.+..
T Consensus        82 ~~~~~~i~~v~q~-~~~~~--~tv~~ni~~~~  110 (251)
T PRK14244         82 VLLRAKVGMVFQK-PNPFP--KSIYDNVAYGP  110 (251)
T ss_pred             HHHhhhEEEEecC-ccccc--CCHHHHHHHHH
Confidence              12345777766 44454  38999998764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.58  E-value=2.7e-15  Score=138.12  Aligned_cols=92  Identities=13%  Similarity=0.112  Sum_probs=71.7

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P----  148 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~----  148 (189)
                      .++|+++|+++.|..      +++|+||+|++||+++|+|+||||||||+|+|+|+++   |++|++...+..  .    
T Consensus       263 ~~~l~~~~l~~~~~~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~  333 (510)
T PRK09700        263 ETVFEVRNVTSRDRK------KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPL  333 (510)
T ss_pred             CcEEEEeCccccCCC------cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHH
Confidence            458999999987631      5789999999999999999999999999999999998   899997543311  1    


Q ss_pred             ---CCeEEEEecCC--CCCCCCccChhhhHHHH
Q 029679          149 ---PDVATVLPMDG--FHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ---~~~~~vv~~~~--~~l~~~~ltv~enl~~~  176 (189)
                         ++..+|++|+.  ..+++ .+++.+|+.+.
T Consensus       334 ~~~~~~i~~v~q~~~~~~~~~-~~tv~e~l~~~  365 (510)
T PRK09700        334 DAVKKGMAYITESRRDNGFFP-NFSIAQNMAIS  365 (510)
T ss_pred             HHHHCCcEEccCccccCCCcC-CCcHHHHhccc
Confidence               12357778753  34554 48999998764

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.58  E-value=3.1e-15  Score=139.71  Aligned_cols=91  Identities=15%  Similarity=0.103  Sum_probs=74.1

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++|+++.|+.. +  ..++|+||++++||.++|+|+||||||||+++|+|+++   |++|.+..++..        .
T Consensus       340 ~i~~~~v~f~y~~~-~--~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l  413 (592)
T PRK10790        340 RIDIDNVSFAYRDD-N--LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL  413 (592)
T ss_pred             eEEEEEEEEEeCCC-C--ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence            49999999999742 2  25779999999999999999999999999999999999   999997544321        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++...+++|+ ..+|.  .|+++|+.+.
T Consensus       414 ~~~i~~v~Q~-~~lF~--~Ti~~NI~~~  438 (592)
T PRK10790        414 RQGVAMVQQD-PVVLA--DTFLANVTLG  438 (592)
T ss_pred             HhheEEEccC-Ccccc--chHHHHHHhC
Confidence            4567888877 55554  4899999875

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.58  E-value=2.5e-15  Score=140.40  Aligned_cols=93  Identities=20%  Similarity=0.222  Sum_probs=74.6

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ..|+++|+++.|++..+  ..|+|+||++++|++++|+|+||||||||+++|+|+++   |++|++..++..        
T Consensus       337 ~~i~~~~v~f~y~~~~~--~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~  411 (574)
T PRK11160        337 VSLTLNNVSFTYPDQPQ--PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAA  411 (574)
T ss_pred             CeEEEEEEEEECCCCCC--cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHH
Confidence            36999999999965312  35789999999999999999999999999999999998   999997554432        


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      .++..++++|+ ..++.  .|+.+|+.++
T Consensus       412 ~r~~i~~v~Q~-~~lf~--~ti~~Ni~~~  437 (574)
T PRK11160        412 LRQAISVVSQR-VHLFS--ATLRDNLLLA  437 (574)
T ss_pred             HHhheeEEccc-chhhc--ccHHHHhhcC
Confidence            13456788877 44554  5899998764

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.57  E-value=2.3e-15  Score=125.81  Aligned_cols=94  Identities=18%  Similarity=0.268  Sum_probs=73.5

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC--------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~--------  148 (189)
                      ||+++|++++..+  ++  .+++|||++++||+++|+||||+|||||+|.|+|-+.   |++|.+..++...        
T Consensus         1 mi~a~nls~~~~G--r~--ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~l   73 (259)
T COG4559           1 MIRAENLSYSLAG--RR--LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEEL   73 (259)
T ss_pred             CeeeeeeEEEeec--ce--eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHHH
Confidence            5889999988866  33  3669999999999999999999999999999999998   9999975444321        


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      .+...++||+...-|+  ++|.|-+.++..-
T Consensus        74 A~~raVlpQ~s~laFp--Ftv~eVV~mGr~p  102 (259)
T COG4559          74 ARHRAVLPQNSSLAFP--FTVQEVVQMGRIP  102 (259)
T ss_pred             HHHhhhcccCcccccc--eEHHHHHHhcccc
Confidence            2234567877555554  7899888876643

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.57  E-value=6.4e-15  Score=124.63  Aligned_cols=91  Identities=13%  Similarity=0.110  Sum_probs=68.5

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      ...|+++|+++.|+...  ..+++++||++++||+++|+|+||||||||+|+|+|+++   +++|++...+..       
T Consensus        17 ~~~i~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~~   91 (257)
T cd03288          17 GGEIKIHDLCVRYENNL--KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLPLH   91 (257)
T ss_pred             CceEEEEEEEEEeCCCC--CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCCHH
Confidence            35799999999997521  235789999999999999999999999999999999998   899987543311       


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDP  173 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl  173 (189)
                       .++..++++|+. .++.  .++.+|+
T Consensus        92 ~~~~~i~~v~q~~-~l~~--~tv~~nl  115 (257)
T cd03288          92 TLRSRLSIILQDP-ILFS--GSIRFNL  115 (257)
T ss_pred             HHhhhEEEECCCC-cccc--cHHHHhc
Confidence             123456777653 3433  3666665

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.57  E-value=3.4e-15  Score=141.98  Aligned_cols=92  Identities=18%  Similarity=0.192  Sum_probs=74.1

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++|+++.|++..+  .+|+|+||+|++||.++|+|+||||||||+++|+|+++   |++|.+..++..        .
T Consensus       463 ~I~~~~vsf~Y~~~~~--~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~~~~l  537 (694)
T TIGR03375       463 EIEFRNVSFAYPGQET--PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL  537 (694)
T ss_pred             eEEEEEEEEEeCCCCc--cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence            5999999999975322  35779999999999999999999999999999999999   999997554422        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++..++++|+ ..++.  .|++||+.+.
T Consensus       538 r~~i~~v~Q~-~~lf~--~TI~eNi~~~  562 (694)
T TIGR03375       538 RRNIGYVPQD-PRLFY--GTLRDNIALG  562 (694)
T ss_pred             HhccEEECCC-hhhhh--hhHHHHHhCC
Confidence            4467788877 44554  5899998764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.57  E-value=1.8e-14  Score=126.89  Aligned_cols=98  Identities=13%  Similarity=0.142  Sum_probs=73.3

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc--CCCceeeccCCCC-----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKASSFDSQVK-----  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~--~p~~G~i~~~~~~-----  147 (189)
                      ..+|+++|+++.|....+  .+|+|+||+|++||++||+|+||||||||+++|+|+....  .+.+|.+...+..     
T Consensus        78 ~~~i~~~nls~~y~~~~~--~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~  155 (329)
T PRK14257         78 ANVFEIRNFNFWYMNRTK--HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK  155 (329)
T ss_pred             CceEEEEeeEEEecCCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence            358999999999964212  3678999999999999999999999999999999998521  1457886432211     


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                           .+...+++||+ ..++.  .++++|+.+..
T Consensus       156 ~~~~~lr~~i~~v~q~-~~~~~--~ti~eNi~~~~  187 (329)
T PRK14257        156 ISSLELRTRIGMVFQK-PTPFE--MSIFDNVAYGP  187 (329)
T ss_pred             cchHhhhccEEEEecC-CccCC--CcHHHHHHhHH
Confidence                 13456778876 34443  79999998764

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.56  E-value=1.3e-14  Score=121.34  Aligned_cols=61  Identities=20%  Similarity=0.245  Sum_probs=53.1

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh--cccCCCceeeccC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDS  144 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~--~~~~p~~G~i~~~  144 (189)
                      +|+++|+++.|++  +  .+++++||+|++|++++|+|+||||||||+++|+|++  +   +++|++...
T Consensus         1 ~i~~~nl~~~~~~--~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~   63 (248)
T PRK09580          1 MLSIKDLHVSVED--K--AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFK   63 (248)
T ss_pred             CeEEEEEEEEeCC--e--eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEEC
Confidence            4899999999975  2  2577999999999999999999999999999999994  5   788987443

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.56  E-value=8.2e-15  Score=121.75  Aligned_cols=89  Identities=18%  Similarity=0.054  Sum_probs=66.9

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEec
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~  157 (189)
                      +.++++++.|+.  +  .+++|+||+|.+|++++|+|+||||||||+++|+|+++   +++|++...+....     ...
T Consensus        23 l~~~~~~~~~~~--~--~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~-----~~~   90 (224)
T cd03220          23 LGILGRKGEVGE--F--WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSS-----LLG   90 (224)
T ss_pred             hhhhhhhhhcCC--e--EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEch-----hhc
Confidence            778888888876  2  35779999999999999999999999999999999998   89999754432110     011


Q ss_pred             CCCCCCCCccChhhhHHHHHHH
Q 029679          158 DGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       158 ~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      ....+.+ .+++.+|+.+....
T Consensus        91 ~~~~~~~-~~tv~enl~~~~~~  111 (224)
T cd03220          91 LGGGFNP-ELTGRENIYLNGRL  111 (224)
T ss_pred             ccccCCC-CCcHHHHHHHHHHH
Confidence            1122233 47899999876543

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.56  E-value=3.7e-15  Score=119.33  Aligned_cols=95  Identities=19%  Similarity=0.204  Sum_probs=75.7

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPD  150 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~  150 (189)
                      ++.++||+...++  .-+.+  +|||+|.+|||+.|+||||||||||+..+.|.+.+-+..+|+++.++..      .++
T Consensus         2 ~l~l~nvsl~l~g--~cLLa--~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR   77 (213)
T COG4136           2 MLCLKNVSLRLPG--SCLLA--NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR   77 (213)
T ss_pred             ceeeeeeeecCCC--ceEEE--eeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence            5788999977766  33445  9999999999999999999999999999999998656677887554322      345


Q ss_pred             eEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       151 ~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      .+++.+|| ..+|++ ++|.+|+.|++
T Consensus        78 q~GiLFQD-~lLFph-lsVg~Nl~fAl  102 (213)
T COG4136          78 QIGILFQD-ALLFPH-LSVGQNLLFAL  102 (213)
T ss_pred             heeeeecc-cccccc-cccccceEEec
Confidence            67777876 566774 99999998865

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.56  E-value=4.7e-15  Score=135.92  Aligned_cols=88  Identities=18%  Similarity=0.178  Sum_probs=68.5

Q ss_pred             EeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---------CCC
Q 029679           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---------PPD  150 (189)
Q Consensus        80 ~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---------~~~  150 (189)
                      ++|+++.|++  +  .+++||||++.+||+++|+|+||||||||+|+|+|+++   |++|++...+..         .+.
T Consensus         1 ~~nl~~~~~~--~--~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~   73 (491)
T PRK10982          1 MSNISKSFPG--V--KALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN   73 (491)
T ss_pred             CCceEEEeCC--E--EeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence            3689999975  2  35779999999999999999999999999999999998   899997433311         023


Q ss_pred             eEEEEecCCCCCCCCccChhhhHHHH
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       151 ~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ..++++|+ ..++. .+++.+|+.+.
T Consensus        74 ~i~~v~q~-~~~~~-~~tv~~~l~~~   97 (491)
T PRK10982         74 GISMVHQE-LNLVL-QRSVMDNMWLG   97 (491)
T ss_pred             CEEEEecc-ccccc-CCCHHHHhhcc
Confidence            45677776 34444 38999998764

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.56  E-value=5.6e-15  Score=135.97  Aligned_cols=98  Identities=14%  Similarity=0.133  Sum_probs=72.6

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC-CceeeccCCCC--C---
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVK--P---  148 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p-~~G~i~~~~~~--~---  148 (189)
                      .++|+++|+++.|+.... ..+++||||+|++||+++|+|+||||||||+|+|+|+++   + ++|++...+..  .   
T Consensus       257 ~~~l~~~~l~~~~~~~~~-~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~~~~~~  332 (506)
T PRK13549        257 EVILEVRNLTAWDPVNPH-IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPVKIRNP  332 (506)
T ss_pred             CceEEEecCccccccccc-cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEECCCCCH
Confidence            458999999999942101 235789999999999999999999999999999999986   5 78887543211  0   


Q ss_pred             ----CCeEEEEecCCC--CCCCCccChhhhHHHHH
Q 029679          149 ----PDVATVLPMDGF--HLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       149 ----~~~~~vv~~~~~--~l~~~~ltv~enl~~~~  177 (189)
                          +...+|++|+..  .++. .+++.+|+.+..
T Consensus       333 ~~~~~~~i~~v~q~~~~~~~~~-~~tv~e~l~~~~  366 (506)
T PRK13549        333 QQAIAQGIAMVPEDRKRDGIVP-VMGVGKNITLAA  366 (506)
T ss_pred             HHHHHCCCEEeCcchhhCCCcC-CCCHHHHhhhhh
Confidence                123567777632  2444 489999998653

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.56  E-value=8.9e-15  Score=119.47  Aligned_cols=87  Identities=13%  Similarity=0.043  Sum_probs=64.4

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh--cccCCCceeeccCCCC--------
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~--~~~~p~~G~i~~~~~~--------  147 (189)
                      |+++|+++.|++  +  .+++|+||++.+||+++|+|+||||||||+++|+|+.  .   |++|++...+..        
T Consensus         1 l~~~~l~~~~~~--~--~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---p~~G~i~~~g~~~~~~~~~~   73 (200)
T cd03217           1 LEIKDLHVSVGG--K--EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE---VTEGEILFKGEDITDLPPEE   73 (200)
T ss_pred             CeEEEEEEEeCC--E--EeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCccEEEECCEECCcCCHHH
Confidence            478999999975  2  3577999999999999999999999999999999994  5   888886433211        


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDP  173 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl  173 (189)
                       .+....+++|+ ..+++ ..++.+++
T Consensus        74 ~~~~~i~~v~q~-~~~~~-~~~~~~~l   98 (200)
T cd03217          74 RARLGIFLAFQY-PPEIP-GVKNADFL   98 (200)
T ss_pred             HhhCcEEEeecC-hhhcc-CccHHHHH
Confidence             12235667765 34444 36676655

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.56  E-value=2.2e-14  Score=122.56  Aligned_cols=92  Identities=18%  Similarity=0.260  Sum_probs=68.6

Q ss_pred             eEEEeeeEEEcCccc----------------eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCcee
Q 029679           77 VVEARCMDEVYDALA----------------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~----------------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~  140 (189)
                      -|+++|++|.|...+                ....+++++||+|.+||+++|+|+||||||||+++|+|+++   +++|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~   80 (264)
T PRK13546          4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGK   80 (264)
T ss_pred             eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceE
Confidence            488999999995410                12346889999999999999999999999999999999998   89998


Q ss_pred             eccCCCCCCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          141 SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       141 i~~~~~~~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                      +...+.     ..++++. ..... .+++.+|+.+...
T Consensus        81 I~~~g~-----~~~~~~~-~~~~~-~~tv~enl~~~~~  111 (264)
T PRK13546         81 VDRNGE-----VSVIAIS-AGLSG-QLTGIENIEFKML  111 (264)
T ss_pred             EEECCE-----EeEEecc-cCCCC-CCcHHHHHHHHHH
Confidence            754432     1233333 22333 4789999876543

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.56  E-value=9.7e-15  Score=113.97  Aligned_cols=61  Identities=25%  Similarity=0.373  Sum_probs=53.5

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ  145 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~  145 (189)
                      |+++|+++.|+..    .+++++||++++||+++|+|+||||||||+++|+|+++   +++|++...+
T Consensus         1 l~~~~l~~~~~~~----~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~   61 (144)
T cd03221           1 IELENLSKTYGGK----LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGS   61 (144)
T ss_pred             CEEEEEEEEECCc----eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECC
Confidence            4689999999752    35779999999999999999999999999999999998   8999875543

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.56  E-value=1.4e-14  Score=150.82  Aligned_cols=101  Identities=17%  Similarity=0.080  Sum_probs=80.1

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      ..+|+++|++|.|++.  ...+|+||||+|++||++||+|+||||||||+|+|+|++.   |++|++...+..       
T Consensus      1935 ~~~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257      1935 TDILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNISD 2009 (2272)
T ss_pred             CceEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchHHH
Confidence            3589999999999752  1247889999999999999999999999999999999998   999997544321       


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCC
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGG  182 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~  182 (189)
                      .+...+++||. ..++. .++++||+.+....++.
T Consensus      2010 ~r~~IGy~pQ~-~~L~~-~LTv~E~L~l~a~l~g~ 2042 (2272)
T TIGR01257      2010 VHQNMGYCPQF-DAIDD-LLTGREHLYLYARLRGV 2042 (2272)
T ss_pred             HhhhEEEEecc-ccCCC-CCCHHHHHHHHHHhcCC
Confidence            12346788865 44554 48999999987666554

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.56  E-value=6.8e-15  Score=116.84  Aligned_cols=59  Identities=22%  Similarity=0.290  Sum_probs=52.5

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD  143 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~  143 (189)
                      |+++|+++.|++  +  .+++++||++++||+++|+|+||||||||+++|+|+++   |++|.+..
T Consensus         1 l~~~~l~~~~~~--~--~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~   59 (163)
T cd03216           1 LELRGITKRFGG--V--KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PDSGEILV   59 (163)
T ss_pred             CEEEEEEEEECC--e--EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEE
Confidence            478999999975  2  25679999999999999999999999999999999998   88998743

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.55  E-value=5.6e-15  Score=137.47  Aligned_cols=92  Identities=17%  Similarity=0.216  Sum_probs=74.0

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      -|+++|+++.|++. +  ..++|+||++++||.+||||+||||||||+++|+|+++   +++|.+..++.+        .
T Consensus       328 ~I~f~~vsf~y~~~-~--~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~l  401 (567)
T COG1132         328 SIEFENVSFSYPGK-K--PVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDSL  401 (567)
T ss_pred             eEEEEEEEEEcCCC-C--ccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHHH
Confidence            49999999999842 2  35679999999999999999999999999999999999   899997553322        1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      ++...+++|+ ..+|.  -|+.+|+.++.
T Consensus       402 r~~I~~V~Qd-~~LF~--~TI~~NI~~g~  427 (567)
T COG1132         402 RKRIGIVSQD-PLLFS--GTIRENIALGR  427 (567)
T ss_pred             HHhccEEccc-ceeec--ccHHHHHhcCC
Confidence            3455688876 55554  58999998863

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.55  E-value=7.2e-15  Score=137.26  Aligned_cols=91  Identities=22%  Similarity=0.252  Sum_probs=73.8

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++|+++.|+.. +.  .++|+||++++|++++|+|+||||||||+++|+|+++   |++|.+..++..        .
T Consensus       334 ~I~~~~vsf~y~~~-~~--iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~~  407 (588)
T PRK13657        334 AVEFDDVSFSYDNS-RQ--GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRASL  407 (588)
T ss_pred             eEEEEEEEEEeCCC-Cc--eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHHH
Confidence            59999999999742 22  5779999999999999999999999999999999999   999997544322        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++...+++|+ ..++.  .|+++|+.++
T Consensus       408 r~~i~~v~Q~-~~lf~--~Ti~~Ni~~~  432 (588)
T PRK13657        408 RRNIAVVFQD-AGLFN--RSIEDNIRVG  432 (588)
T ss_pred             HhheEEEecC-ccccc--ccHHHHHhcC
Confidence            3457888877 45554  5899998764

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=8.9e-15  Score=135.04  Aligned_cols=90  Identities=18%  Similarity=0.156  Sum_probs=73.1

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      -|+++||++.|+.. +  ..|+++||+|++||-+||||.|||||||++|+|.+++    ..+|+|...+.+        .
T Consensus       351 ~I~F~dV~f~y~~k-~--~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~----d~sG~I~IdG~dik~~~~~Sl  423 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPK-R--KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF----DYSGSILIDGQDIKEVSLESL  423 (591)
T ss_pred             cEEEEeeEEEeCCC-C--ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh----ccCCcEEECCeeHhhhChHHh
Confidence            49999999999874 2  2467999999999999999999999999999999999    477886544322        3


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      |+.++++||+ -.+|.  -|++.|+.++
T Consensus       424 R~~Ig~VPQd-~~LFn--dTIl~NI~YG  448 (591)
T KOG0057|consen  424 RQSIGVVPQD-SVLFN--DTILYNIKYG  448 (591)
T ss_pred             hhheeEeCCc-ccccc--hhHHHHhhcC
Confidence            6678999988 44553  5899998775

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.55  E-value=2.3e-14  Score=132.84  Aligned_cols=91  Identities=20%  Similarity=0.190  Sum_probs=72.1

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .++++|+++.|+...+  .+++|+||++++|+.++|+|+||||||||+++|+|+++   |++|.+..++..        .
T Consensus       316 ~i~~~~v~~~y~~~~~--~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~  390 (544)
T TIGR01842       316 HLSVENVTIVPPGGKK--PTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF  390 (544)
T ss_pred             eEEEEEEEEEcCCCCc--cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence            5999999999965322  35779999999999999999999999999999999998   999987444321        1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~  175 (189)
                      ++..++++|+ ..++.  .|+++|+.+
T Consensus       391 ~~~i~~v~q~-~~lf~--~ti~~Ni~~  414 (544)
T TIGR01842       391 GKHIGYLPQD-VELFP--GTVAENIAR  414 (544)
T ss_pred             hhheEEecCC-ccccc--ccHHHHHhc
Confidence            3456788876 44454  488999874

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.54  E-value=7.4e-16  Score=125.10  Aligned_cols=83  Identities=17%  Similarity=0.165  Sum_probs=64.6

Q ss_pred             ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC--------CCeEEEEecCCCCCCCCcc
Q 029679           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------PDVATVLPMDGFHLYLSQL  167 (189)
Q Consensus        96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~--------~~~~~vv~~~~~~l~~~~l  167 (189)
                      .|+++||++++||.++|.||||||||||+|+++-|..   |++|.+...+...        +....|+.|. ..+|.  -
T Consensus        18 il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~-paLfg--~   91 (223)
T COG4619          18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEAYRQQVSYCAQT-PALFG--D   91 (223)
T ss_pred             eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHHHHHHHHHHHcC-ccccc--c
Confidence            4779999999999999999999999999999999998   9999975544321        1223344433 56665  5


Q ss_pred             ChhhhHHHHHHHcCCCC
Q 029679          168 DAMEDPKEAHARRGGEV  184 (189)
Q Consensus       168 tv~enl~~~~~~~g~~~  184 (189)
                      ||++|+.|++..+...+
T Consensus        92 tVeDNlifP~~~r~rr~  108 (223)
T COG4619          92 TVEDNLIFPWQIRNRRP  108 (223)
T ss_pred             chhhccccchHHhccCC
Confidence            99999999987765443

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.54  E-value=1.3e-14  Score=124.85  Aligned_cols=88  Identities=18%  Similarity=0.231  Sum_probs=67.8

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CC
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PP  149 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~  149 (189)
                      |+++|+++.|.....  .+|+||||+|++||+++|+|+||||||||+++|+|+++    .+|.+...+..        .+
T Consensus         3 i~~~nls~~~~~~~~--~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~----~~G~I~i~g~~i~~~~~~~lr   76 (275)
T cd03289           3 MTVKDLTAKYTEGGN--AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN----TEGDIQIDGVSWNSVPLQKWR   76 (275)
T ss_pred             EEEEEEEEEeCCCCC--cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEhhhCCHHHHh
Confidence            789999999953212  36789999999999999999999999999999999984    46876544322        12


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHH
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPK  174 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~  174 (189)
                      +..+|++|+ ..++.  .++++|+.
T Consensus        77 ~~i~~v~q~-~~lf~--~tv~~nl~   98 (275)
T cd03289          77 KAFGVIPQK-VFIFS--GTFRKNLD   98 (275)
T ss_pred             hhEEEECCC-cccch--hhHHHHhh
Confidence            346777866 45554  48999885

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.54  E-value=9.6e-15  Score=136.21  Aligned_cols=90  Identities=16%  Similarity=0.145  Sum_probs=70.3

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      -|+++||++.|.+. +  .+|+|+||++++|+.++|||+||||||||+++|+|++    |++|++..++..        .
T Consensus       349 ~i~~~~vsf~~~~~-~--~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~l  421 (588)
T PRK11174        349 TIEAEDLEILSPDG-K--TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESW  421 (588)
T ss_pred             eEEEEeeEEeccCC-C--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHHH
Confidence            49999999766432 2  3578999999999999999999999999999999998    567887544322        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++...+++|+. .+|.  .|++||+.++
T Consensus       422 r~~i~~v~Q~~-~LF~--~TI~eNI~~g  446 (588)
T PRK11174        422 RKHLSWVGQNP-QLPH--GTLRDNVLLG  446 (588)
T ss_pred             HhheEEecCCC-cCCC--cCHHHHhhcC
Confidence            34578888874 4554  5899999875

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.54  E-value=8e-15  Score=134.55  Aligned_cols=97  Identities=15%  Similarity=0.110  Sum_probs=71.9

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC-CceeeccCCCCC-----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQVKP-----  148 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p-~~G~i~~~~~~~-----  148 (189)
                      .++|+++|+++.|+.... ..+++|+||+|++||+++|+|+||||||||+|+|+|+++   | ++|++...+...     
T Consensus       255 ~~~l~~~~l~~~~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~~~  330 (500)
T TIGR02633       255 DVILEARNLTCWDVINPH-RKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIRNP  330 (500)
T ss_pred             CceEEEeCCccccccccc-ccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCCCH
Confidence            358999999999842101 135789999999999999999999999999999999997   5 688875433110     


Q ss_pred             ----CCeEEEEecCCC--CCCCCccChhhhHHHH
Q 029679          149 ----PDVATVLPMDGF--HLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ----~~~~~vv~~~~~--~l~~~~ltv~enl~~~  176 (189)
                          +...++++|+..  .+++ .+++.+|+.+.
T Consensus       331 ~~~~~~~i~~v~q~~~~~~l~~-~~tv~~~~~~~  363 (500)
T TIGR02633       331 AQAIRAGIAMVPEDRKRHGIVP-ILGVGKNITLS  363 (500)
T ss_pred             HHHHhCCCEEcCcchhhCCcCC-CCCHHHHhcch
Confidence                223567776631  3444 48899998764

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.54  E-value=1e-14  Score=135.51  Aligned_cols=94  Identities=27%  Similarity=0.309  Sum_probs=73.4

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ..|+++|+++.|+.... ...++|+||++++||.++|+|+||||||||+++|+|+++   |++|++..++..        
T Consensus       336 ~~i~~~~v~f~y~~~~~-~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~  411 (576)
T TIGR02204       336 GEIEFEQVNFAYPARPD-QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAE  411 (576)
T ss_pred             ceEEEEEEEEECCCCCC-CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence            35999999999975211 135779999999999999999999999999999999998   999997544321        


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      .++..+++||+ ..++.  .|+++|+.++
T Consensus       412 ~~~~i~~~~Q~-~~lf~--~Ti~~Ni~~~  437 (576)
T TIGR02204       412 LRARMALVPQD-PVLFA--ASVMENIRYG  437 (576)
T ss_pred             HHHhceEEccC-Ccccc--ccHHHHHhcC
Confidence            12356788877 44553  5899998763

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.54  E-value=3.4e-14  Score=134.89  Aligned_cols=98  Identities=15%  Similarity=0.209  Sum_probs=75.9

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C-----
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P-----  148 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~-----  148 (189)
                      ++|+++|+++.|+...+....++|+||++++||+++|+|+||||||||+++|+|+++   +++|++...+..  .     
T Consensus         3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~   79 (648)
T PRK10535          3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADA   79 (648)
T ss_pred             cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHH
Confidence            479999999999642112235779999999999999999999999999999999998   899987443321  0     


Q ss_pred             -----CCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       149 -----~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                           ++..++++|+ ..+++. +++.+|+.+...
T Consensus        80 ~~~~~~~~i~~v~q~-~~l~~~-~tv~enl~~~~~  112 (648)
T PRK10535         80 LAQLRREHFGFIFQR-YHLLSH-LTAAQNVEVPAV  112 (648)
T ss_pred             HHHHHhccEEEEeCC-cccCCC-CCHHHHHHHHHH
Confidence                 2346777866 456654 799999987553

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.54  E-value=1.3e-15  Score=125.08  Aligned_cols=93  Identities=17%  Similarity=0.211  Sum_probs=75.8

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      ++.|+++|+.|.|+..    ..|++|||+-++|++++|||.|||||||++|||.-|..   |+.|.|..++..       
T Consensus         4 ~~~l~v~dlHK~~G~~----eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~~~   76 (256)
T COG4598           4 ENALEVEDLHKRYGEH----EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDK   76 (256)
T ss_pred             ccceehhHHHhhcccc----hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeeeCC
Confidence            3569999999999873    46779999999999999999999999999999999998   999987654421       


Q ss_pred             --------C------CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          148 --------P------PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 --------~------~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                              .      +...++++ |.|++|.+ ||+.+|+..+
T Consensus        77 ~G~l~~ad~~q~~r~Rs~L~mVF-Q~FNLWsH-mtvLeNViEa  117 (256)
T COG4598          77 DGQLKPADKRQLQRLRTRLGMVF-QHFNLWSH-MTVLENVIEA  117 (256)
T ss_pred             CCCeeeCCHHHHHHHHHHhhHhh-hhcchhHH-HHHHHHHHhc
Confidence                    0      11235556 46999985 9999998775

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.54  E-value=1.1e-14  Score=135.11  Aligned_cols=92  Identities=18%  Similarity=0.182  Sum_probs=73.6

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      -|+++|+++.|+...+  ..++|+||++++||+++|+|+||||||||+++|+|+++   |++|.+..++..        .
T Consensus       330 ~i~~~~v~f~y~~~~~--~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~  404 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDR--PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL  404 (571)
T ss_pred             eEEEEEEEEEcCCCCC--ccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence            5999999999965322  35779999999999999999999999999999999999   999998655422        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++...+++|+ ..++.  .|+++|+.+.
T Consensus       405 ~~~i~~v~Q~-~~lf~--~Ti~~Ni~~~  429 (571)
T TIGR02203       405 RRQVALVSQD-VVLFN--DTIANNIAYG  429 (571)
T ss_pred             HhhceEEccC-ccccc--ccHHHHHhcC
Confidence            3456788877 44453  5899988754

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.53  E-value=2.2e-14  Score=119.49  Aligned_cols=76  Identities=20%  Similarity=0.215  Sum_probs=58.8

Q ss_pred             cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---CCCeEEEEecCCCCCCCCccChhhhH
Q 029679           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVATVLPMDGFHLYLSQLDAMEDP  173 (189)
Q Consensus        97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---~~~~~~vv~~~~~~l~~~~ltv~enl  173 (189)
                      ++++||+|.+||+++|+|+||||||||+++|+|+++   +++|++...+..   ......+++|+ ..++. .+++.+|+
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~v~q~-~~l~~-~~tv~e~l   75 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRMVVFQN-YSLLP-WLTVRENI   75 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhheEEecC-cccCC-CCCHHHHH
Confidence            469999999999999999999999999999999998   899987543321   11123567765 44554 38999999


Q ss_pred             HHHH
Q 029679          174 KEAH  177 (189)
Q Consensus       174 ~~~~  177 (189)
                      .+..
T Consensus        76 ~~~~   79 (230)
T TIGR01184        76 ALAV   79 (230)
T ss_pred             HHHH
Confidence            8764

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.53  E-value=3.3e-14  Score=130.53  Aligned_cols=112  Identities=17%  Similarity=0.151  Sum_probs=82.1

Q ss_pred             HHHHhcccCCccccCcCCCCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccC
Q 029679           56 RSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW  135 (189)
Q Consensus        56 ~~L~~a~p~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~  135 (189)
                      +.+++..|.....-+.+...-.|.++++...=++..+  ..|+++||++.+||.+|||||||||||||+|+|.|..+   
T Consensus       313 ~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~--pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---  387 (580)
T COG4618         313 NELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKK--PILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP---  387 (580)
T ss_pred             HHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCCC--cceecceeEecCCceEEEECCCCccHHHHHHHHHcccc---
Confidence            3566666653332222233347999999875444333  34679999999999999999999999999999999998   


Q ss_pred             CCceeeccCCCC--------CCCeEEEEecCCCCCCCCccChhhhHHH
Q 029679          136 PQKASSFDSQVK--------PPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus       136 p~~G~i~~~~~~--------~~~~~~vv~~~~~~l~~~~ltv~enl~~  175 (189)
                      |..|.+...+.+        .-+.++|.||+ ..+|+  -|+.||++-
T Consensus       388 p~~G~VRLDga~l~qWd~e~lG~hiGYLPQd-VeLF~--GTIaeNIaR  432 (580)
T COG4618         388 PTSGSVRLDGADLRQWDREQLGRHIGYLPQD-VELFD--GTIAENIAR  432 (580)
T ss_pred             cCCCcEEecchhhhcCCHHHhccccCcCccc-ceecC--CcHHHHHHh
Confidence            999987443322        12457888976 88886  499999874

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.53  E-value=1.5e-14  Score=135.04  Aligned_cols=92  Identities=14%  Similarity=0.181  Sum_probs=72.9

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++++++.|+...+  .+|+|+||++++|++++|+|+||||||||+++|+|+++   |++|++..++..        .
T Consensus       313 ~I~~~~v~~~y~~~~~--~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~  387 (569)
T PRK10789        313 ELDVNIRQFTYPQTDH--PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW  387 (569)
T ss_pred             cEEEEEEEEECCCCCC--ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence            5899999999975312  35789999999999999999999999999999999998   999997544322        1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++..++++|+ ..++.  .|+++|+.++
T Consensus       388 ~~~i~~v~q~-~~lf~--~ti~~Ni~~~  412 (569)
T PRK10789        388 RSRLAVVSQT-PFLFS--DTVANNIALG  412 (569)
T ss_pred             HhheEEEccC-Ceecc--ccHHHHHhcC
Confidence            3456778876 44554  5899998764

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.52  E-value=4.8e-14  Score=146.97  Aligned_cols=101  Identities=16%  Similarity=0.206  Sum_probs=79.4

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      .+.|+++|++|.|+...+  .+|+|+||++.+||+++|+|+||||||||+|+|+|+++   |++|++...+..       
T Consensus       926 ~~~L~I~nLsK~y~~~~k--~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257       926 VPGVCVKNLVKIFEPSGR--PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNLDA 1000 (2272)
T ss_pred             CceEEEEeEEEEecCCCc--eEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchHHH
Confidence            357999999999963212  36789999999999999999999999999999999998   999997543321       


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCC
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGG  182 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~  182 (189)
                      .++..++++|+ ..+++ .+|+.||+.+..+.++.
T Consensus      1001 ~r~~IG~~pQ~-~~L~~-~LTV~E~L~f~~~lkg~ 1033 (2272)
T TIGR01257      1001 VRQSLGMCPQH-NILFH-HLTVAEHILFYAQLKGR 1033 (2272)
T ss_pred             HhhcEEEEecC-CcCCC-CCCHHHHHHHHHHhcCC
Confidence            12346778876 44555 49999999987766553

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.52  E-value=4.2e-14  Score=134.10  Aligned_cols=89  Identities=17%  Similarity=0.184  Sum_probs=67.9

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEE
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT  153 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~  153 (189)
                      ..++|+++|+++.|++  +  .+++|+||+|.+|+++||+|+||||||||+|+|+|+++   |++|.+..+..   ...+
T Consensus       309 ~~~~l~~~~l~~~y~~--~--~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~ig  378 (638)
T PRK10636        309 PNPLLKMEKVSAGYGD--R--IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAKG---IKLG  378 (638)
T ss_pred             CCceEEEEeeEEEeCC--e--eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCC---EEEE
Confidence            4568999999999975  2  35679999999999999999999999999999999998   99999754321   2356


Q ss_pred             EEecCCC-CCCCCccChhhhH
Q 029679          154 VLPMDGF-HLYLSQLDAMEDP  173 (189)
Q Consensus       154 vv~~~~~-~l~~~~ltv~enl  173 (189)
                      |++|+.. .+.. ..++.+++
T Consensus       379 y~~Q~~~~~l~~-~~~~~~~~  398 (638)
T PRK10636        379 YFAQHQLEFLRA-DESPLQHL  398 (638)
T ss_pred             EecCcchhhCCc-cchHHHHH
Confidence            7776532 2222 24566554

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=8.5e-15  Score=134.96  Aligned_cols=92  Identities=22%  Similarity=0.244  Sum_probs=74.1

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC--------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~--------  148 (189)
                      .++++||+++|++.  ...+|+|+||++++||.++|+|+||||||||+++|+|.+.   +++|++..++...        
T Consensus       336 ~l~~~~vsF~y~~~--~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~~~~  410 (573)
T COG4987         336 ALELRNVSFTYPGQ--QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDEQAL  410 (573)
T ss_pred             eeeeccceeecCCC--ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCChhhH
Confidence            79999999999874  3357889999999999999999999999999999999998   9999986554321        


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++...++.| ..++|.  -|+++|+.++
T Consensus       411 ~e~i~vl~Q-r~hlF~--~Tlr~NL~lA  435 (573)
T COG4987         411 RETISVLTQ-RVHLFS--GTLRDNLRLA  435 (573)
T ss_pred             HHHHhhhcc-chHHHH--HHHHHHHhhc
Confidence            223455664 467775  4889998764

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=1.5e-14  Score=118.72  Aligned_cols=97  Identities=22%  Similarity=0.241  Sum_probs=70.3

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCe-----
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV-----  151 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~-----  151 (189)
                      +++.+|++..-+.  +.+  +.++||++.+||++-|.|+||||||||+|+|+||+.   |++|++...+......     
T Consensus         2 ~L~a~~L~~~R~e--~~l--f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~   74 (209)
T COG4133           2 MLEAENLSCERGE--RTL--FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH   74 (209)
T ss_pred             cchhhhhhhccCc--cee--ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence            4677888777655  333  459999999999999999999999999999999999   9999986543221111     


Q ss_pred             --EEEEecCCCCCCCCccChhhhHHHHHHHcCC
Q 029679          152 --ATVLPMDGFHLYLSQLDAMEDPKEAHARRGG  182 (189)
Q Consensus       152 --~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~  182 (189)
                        .-|+-.+  .-....+|++||+.|.....+.
T Consensus        75 ~~l~yLGH~--~giK~eLTa~ENL~F~~~~~~~  105 (209)
T COG4133          75 QALLYLGHQ--PGIKTELTALENLHFWQRFHGS  105 (209)
T ss_pred             HHHHHhhcc--ccccchhhHHHHHHHHHHHhCC
Confidence              1111111  2223359999999998876653

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.52  E-value=1.6e-14  Score=137.59  Aligned_cols=92  Identities=20%  Similarity=0.234  Sum_probs=73.3

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++|+++.|+...+  ..++|+||++++|+.++|+|+||||||||+++|+|++.   |++|++..++..        .
T Consensus       455 ~i~~~~vsf~y~~~~~--~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~  529 (694)
T TIGR01846       455 AITFENIRFRYAPDSP--EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAWL  529 (694)
T ss_pred             eEEEEEEEEEcCCCCc--cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHHH
Confidence            5999999999965322  35779999999999999999999999999999999998   999997554432        1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++..++++|+ ..++.  .|+++|+.+.
T Consensus       530 r~~i~~v~q~-~~lf~--~ti~eNi~~~  554 (694)
T TIGR01846       530 RRQMGVVLQE-NVLFS--RSIRDNIALC  554 (694)
T ss_pred             HHhCeEEccC-Ceehh--hhHHHHHhcC
Confidence            3456788877 44443  5899998763

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.52  E-value=3.4e-14  Score=118.11  Aligned_cols=79  Identities=11%  Similarity=0.129  Sum_probs=59.5

Q ss_pred             cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC----CceeeccCCCC------CCCeEEEEecCCCCCCCCc
Q 029679           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKASSFDSQVK------PPDVATVLPMDGFHLYLSQ  166 (189)
Q Consensus        97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p----~~G~i~~~~~~------~~~~~~vv~~~~~~l~~~~  166 (189)
                      ++|+||++.+|++++|+|+||||||||+|+|+|+++   |    ++|++...+..      ..+..++++|+....+...
T Consensus         2 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~   78 (230)
T TIGR02770         2 VQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPL   78 (230)
T ss_pred             ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcc
Confidence            579999999999999999999999999999999998   7    78987443321      1234677777643233334


Q ss_pred             cChhhhHHHHHH
Q 029679          167 LDAMEDPKEAHA  178 (189)
Q Consensus       167 ltv~enl~~~~~  178 (189)
                      +++.+|+.+...
T Consensus        79 ~t~~~~~~~~~~   90 (230)
T TIGR02770        79 FTMGNHAIETLR   90 (230)
T ss_pred             cCHHHHHHHHHH
Confidence            788888766543

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.51  E-value=2.4e-14  Score=115.01  Aligned_cols=59  Identities=27%  Similarity=0.429  Sum_probs=51.9

Q ss_pred             EEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS  144 (189)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~  144 (189)
                      +++|+++.|+.  +  .+++++||++.+||+++|+|+||||||||+++|+|+++   +++|++...
T Consensus         1 ~~~~l~~~~~~--~--~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~   59 (180)
T cd03214           1 EVENLSVGYGG--R--TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLD   59 (180)
T ss_pred             CeeEEEEEECC--e--eeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEC
Confidence            46899999975  2  35779999999999999999999999999999999998   899987543

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.50  E-value=5.8e-14  Score=132.26  Aligned_cols=88  Identities=14%  Similarity=0.168  Sum_probs=71.7

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEE
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT  153 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~  153 (189)
                      ..++|+++|+++.|++.     .++++||+|++||+++|+|+||||||||+|+|+|+++   |++|++...     ...+
T Consensus       337 ~~~~l~~~~ls~~~~~~-----~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-----~~i~  403 (590)
T PRK13409        337 RETLVEYPDLTKKLGDF-----SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-----LKIS  403 (590)
T ss_pred             CceEEEEcceEEEECCE-----EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-----eeEE
Confidence            34689999999999752     2679999999999999999999999999999999998   899987543     1356


Q ss_pred             EEecCCCCCCCCccChhhhHHHH
Q 029679          154 VLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       154 vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      |++|+ ..+.. .+++.+|+.+.
T Consensus       404 y~~Q~-~~~~~-~~tv~e~l~~~  424 (590)
T PRK13409        404 YKPQY-IKPDY-DGTVEDLLRSI  424 (590)
T ss_pred             Eeccc-ccCCC-CCcHHHHHHHH
Confidence            67765 34444 48999998875

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.50  E-value=4.5e-14  Score=116.70  Aligned_cols=76  Identities=16%  Similarity=0.149  Sum_probs=57.4

Q ss_pred             ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec-cCCCCCCCeEEEEecCCCCCCCCccChhhhHH
Q 029679           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (189)
Q Consensus        96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~-~~~~~~~~~~~vv~~~~~~l~~~~ltv~enl~  174 (189)
                      +++||||+|.+|++++|+|+||||||||+|+|+|+++   +++|.+. ..+...     .+.+ ...+++ .+++.+|+.
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~-----~~~~-~~~l~~-~ltv~enl~   71 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDAL-----PLGA-NSFILP-GLTGEENAR   71 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCcee-----cccc-ccccCC-cCcHHHHHH
Confidence            4679999999999999999999999999999999998   8999874 222110     0111 123444 489999998


Q ss_pred             HHHHHcC
Q 029679          175 EAHARRG  181 (189)
Q Consensus       175 ~~~~~~g  181 (189)
                      +.....+
T Consensus        72 ~~~~~~~   78 (213)
T PRK15177         72 MMASLYG   78 (213)
T ss_pred             HHHHHcC
Confidence            8765443

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.50  E-value=3e-14  Score=130.47  Aligned_cols=61  Identities=13%  Similarity=0.091  Sum_probs=54.7

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD  143 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~  143 (189)
                      .+|+++|+++.|++  +  .+|+|+||+|.+|++++|+|+||||||||+|+|+|+++   |++|.+..
T Consensus         2 ~~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~   62 (490)
T PRK10938          2 SSLQISQGTFRLSD--T--KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQS   62 (490)
T ss_pred             ceEEEEeEEEEcCC--e--eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEE
Confidence            37999999999975  2  25789999999999999999999999999999999998   88998743

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.50  E-value=3.6e-14  Score=132.99  Aligned_cols=91  Identities=19%  Similarity=0.220  Sum_probs=72.7

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .++++|+++.|++. +  ..++|+||++++|++++|+|+||||||||+++|+|+++   |++|++..++..        .
T Consensus       334 ~i~~~~v~~~y~~~-~--~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~  407 (585)
T TIGR01192       334 AVEFRHITFEFANS-S--QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRESL  407 (585)
T ss_pred             eEEEEEEEEECCCC-C--ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHHH
Confidence            59999999999752 2  25789999999999999999999999999999999998   999997543321        1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++..++++|+. .++.  .|+++|+.++
T Consensus       408 ~~~i~~v~q~~-~lf~--~ti~~Ni~~~  432 (585)
T TIGR01192       408 RKSIATVFQDA-GLFN--RSIRENIRLG  432 (585)
T ss_pred             HhheEEEccCC-ccCc--ccHHHHHhcC
Confidence            34567888774 4443  5899998764

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.50  E-value=3.9e-14  Score=129.70  Aligned_cols=63  Identities=22%  Similarity=0.153  Sum_probs=54.1

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCC-Cceeecc
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFD  143 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p-~~G~i~~  143 (189)
                      ..++|+++|+++.|++  +  .+++|+||+|++||+++|+|+||||||||+|+|+|+.+   + ++|++..
T Consensus       257 ~~~~l~~~~l~~~~~~--~--~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~  320 (490)
T PRK10938        257 NEPRIVLNNGVVSYND--R--PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTL  320 (490)
T ss_pred             CCceEEEeceEEEECC--e--eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEE
Confidence            3468999999999975  2  25779999999999999999999999999999999875   4 5787643

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.50  E-value=1.3e-14  Score=120.23  Aligned_cols=97  Identities=19%  Similarity=0.227  Sum_probs=76.2

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCC-CCCC-----
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-VKPP-----  149 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~-~~~~-----  149 (189)
                      ++|++++++++|+++    .||+++||++.+||.-+||||||+||||++.+|+|..+   |+.|+++..+ .+..     
T Consensus         4 ~iL~~~~vsVsF~GF----~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e~   76 (249)
T COG4674           4 IILYLDGVSVSFGGF----KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH   76 (249)
T ss_pred             ceEEEeceEEEEcce----eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCHH
Confidence            579999999999885    68899999999999999999999999999999999998   9999975444 2210     


Q ss_pred             Ce--EEE--EecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          150 DV--ATV--LPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       150 ~~--~~v--v~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                      ++  .++  =+ |-...|.. ++|++|+.++....+
T Consensus        77 ~IAr~GIGRKF-Q~PtVfe~-ltV~eNLelA~~~~k  110 (249)
T COG4674          77 RIARAGIGRKF-QKPTVFEN-LTVRENLELALNRDK  110 (249)
T ss_pred             HHHHhccCccc-cCCeehhh-ccHHHHHHHHhcCCc
Confidence            11  111  13 33556664 999999999876543

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.49  E-value=3.1e-14  Score=141.13  Aligned_cols=94  Identities=18%  Similarity=0.218  Sum_probs=77.5

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++||.++|+.. ..+..|+|+||+|++|++++|||+|||||||++++|.+++.   |++|++...+.+        .
T Consensus       350 ~ief~nV~FsYPsR-pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~~~~l  425 (1228)
T KOG0055|consen  350 EIEFRNVCFSYPSR-PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLNLKWL  425 (1228)
T ss_pred             ceEEEEEEecCCCC-CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcchHHH
Confidence            59999999999874 34667889999999999999999999999999999999999   999998554433        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      +...++|.|++ -+|.  .|+.||+.++.
T Consensus       426 r~~iglV~QeP-vlF~--~tI~eNI~~G~  451 (1228)
T KOG0055|consen  426 RSQIGLVSQEP-VLFA--TTIRENIRYGK  451 (1228)
T ss_pred             HhhcCeeeech-hhhc--ccHHHHHhcCC
Confidence            34567777663 4443  79999998764

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.49  E-value=3.6e-14  Score=144.91  Aligned_cols=96  Identities=16%  Similarity=0.187  Sum_probs=74.0

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhccc----------------------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI----------------------  134 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~----------------------  134 (189)
                      -|+++||++.|+... ...+|+|+||+|++|+++||||+||||||||+++|+|++.+.                      
T Consensus      1165 ~I~f~nVsF~Y~~~~-~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRP-NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQ 1243 (1466)
T ss_pred             eEEEEEEEEECCCCC-CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccc
Confidence            499999999997521 123678999999999999999999999999999999999820                      


Q ss_pred             -----------------------------CCCceeeccCCCC--------CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          135 -----------------------------WPQKASSFDSQVK--------PPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       135 -----------------------------~p~~G~i~~~~~~--------~~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                                                   .+++|.|..++.+        .++..++|+|+ ..+|.  .|++||+.++
T Consensus      1244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qe-p~LF~--gTIreNI~~g 1319 (1466)
T PTZ00265       1244 GDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQE-PMLFN--MSIYENIKFG 1319 (1466)
T ss_pred             cccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCC-Ccccc--ccHHHHHhcC
Confidence                                         1257887544322        24456788877 45553  6999999886

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.49  E-value=1e-13  Score=131.86  Aligned_cols=89  Identities=13%  Similarity=0.025  Sum_probs=71.5

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEE
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv  155 (189)
                      .+|+++|+++.|++. +  ..++|+||++++||+++|+|+||||||||+|+|+|+++   +++|.+....   +...+++
T Consensus       450 ~~i~~~nv~~~~~~~-~--~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~---~~~i~~v  520 (659)
T TIGR00954       450 NGIKFENIPLVTPNG-D--VLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPA---KGKLFYV  520 (659)
T ss_pred             CeEEEEeeEEECCCC-C--eeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecC---CCcEEEE
Confidence            469999999999642 2  35779999999999999999999999999999999998   8888875432   3456778


Q ss_pred             ecCCCCCCCCccChhhhHHHH
Q 029679          156 PMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       156 ~~~~~~l~~~~ltv~enl~~~  176 (189)
                      +|+. .++.  .++++|+.++
T Consensus       521 ~Q~~-~l~~--~tv~eni~~~  538 (659)
T TIGR00954       521 PQRP-YMTL--GTLRDQIIYP  538 (659)
T ss_pred             CCCC-CCCC--cCHHHHHhcC
Confidence            8764 3443  3899998765

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.48  E-value=4.7e-14  Score=133.73  Aligned_cols=61  Identities=23%  Similarity=0.249  Sum_probs=54.7

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS  144 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~  144 (189)
                      ||+++|+++.|++  +  ..++||||+|.+|+++||+|+||||||||+|+|+|++.   |++|.|...
T Consensus         1 ~i~i~nls~~~g~--~--~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~   61 (638)
T PRK10636          1 MIVFSSLQIRRGV--R--VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFP   61 (638)
T ss_pred             CEEEEEEEEEeCC--c--eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEec
Confidence            5899999999976  2  35679999999999999999999999999999999998   999997543

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.48  E-value=5.7e-14  Score=143.43  Aligned_cols=94  Identities=16%  Similarity=0.141  Sum_probs=75.0

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc-CCCC--------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVK--------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~-~~~~--------  147 (189)
                      .|+++||++.|+.. ....+|+|+||+|++|+++||+|+||||||||+++|+|++.   |++|.+.. ++..        
T Consensus       382 ~I~~~nVsf~Y~~~-~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~  457 (1466)
T PTZ00265        382 KIQFKNVRFHYDTR-KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW  457 (1466)
T ss_pred             cEEEEEEEEEcCCC-CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence            59999999999753 12346789999999999999999999999999999999999   99999754 3221        


Q ss_pred             CCCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       148 ~~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      .++..++++|+ ..++.  .|+.+|+.++.
T Consensus       458 lr~~Ig~V~Q~-~~LF~--~TI~eNI~~g~  484 (1466)
T PTZ00265        458 WRSKIGVVSQD-PLLFS--NSIKNNIKYSL  484 (1466)
T ss_pred             HHHhccEeccc-ccchh--ccHHHHHHhcC
Confidence            12346778876 45554  59999999863

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.48  E-value=6.7e-14  Score=128.71  Aligned_cols=89  Identities=12%  Similarity=0.104  Sum_probs=68.9

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      .++|+++|+++.         .++++||+|++||+++|+|+||||||||+|+|+|+++   |++|++...+..       
T Consensus       255 ~~~l~~~~l~~~---------~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~  322 (501)
T PRK10762        255 EVRLKVDNLSGP---------GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQ  322 (501)
T ss_pred             CcEEEEeCcccC---------CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence            458999999841         3679999999999999999999999999999999998   899997443311       


Q ss_pred             --CCCeEEEEecCCC--CCCCCccChhhhHHHH
Q 029679          148 --PPDVATVLPMDGF--HLYLSQLDAMEDPKEA  176 (189)
Q Consensus       148 --~~~~~~vv~~~~~--~l~~~~ltv~enl~~~  176 (189)
                        .+...+|++|+..  .+++ .+++.+|+.+.
T Consensus       323 ~~~~~~i~~v~q~~~~~~~~~-~~tv~e~l~~~  354 (501)
T PRK10762        323 DGLANGIVYISEDRKRDGLVL-GMSVKENMSLT  354 (501)
T ss_pred             HHHHCCCEEecCccccCCCcC-CCcHHHHhhhh
Confidence              0123577787642  3444 48999998764

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.48  E-value=6.2e-14  Score=132.69  Aligned_cols=63  Identities=16%  Similarity=0.121  Sum_probs=55.8

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS  144 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~  144 (189)
                      |.+|+++|+++.|++  +  ..++||||+|.+|++++|+|+||||||||+|+|+|++.   |++|.+...
T Consensus         1 m~~l~i~~ls~~~~~--~--~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~   63 (635)
T PRK11147          1 MSLISIHGAWLSFSD--A--PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYE   63 (635)
T ss_pred             CcEEEEeeEEEEeCC--c--eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeC
Confidence            357999999999976  2  35679999999999999999999999999999999998   899997543

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.48  E-value=3.3e-14  Score=115.25  Aligned_cols=97  Identities=19%  Similarity=0.178  Sum_probs=76.1

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc--CCCC--------
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD--SQVK--------  147 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~--~~~~--------  147 (189)
                      |+++++++.|+..    .+|.||+|+.+.||++.++||||+|||||+|.|.-|.-   |.+|.+..  +..+        
T Consensus         3 irv~~in~~yg~~----q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~k   75 (242)
T COG4161           3 IQLNGINCFYGAH----QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSDK   75 (242)
T ss_pred             eEEcccccccccc----hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccHH
Confidence            8899999999874    46779999999999999999999999999999998886   88888522  1111        


Q ss_pred             ----CCCeEEEEecCCCCCCCCccChhhhHHHH-HHHcCCC
Q 029679          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGGE  183 (189)
Q Consensus       148 ----~~~~~~vv~~~~~~l~~~~ltv~enl~~~-~~~~g~~  183 (189)
                          .++..++++|+ +++|++ ++|.+|+..+ .+..|.+
T Consensus        76 ~i~~lr~~vgmvfqq-y~lwph-ltv~enlieap~kv~gl~  114 (242)
T COG4161          76 AIRDLRRNVGMVFQQ-YNLWPH-LTVQENLIEAPCRVLGLS  114 (242)
T ss_pred             HHHHHHHhhhhhhhh-hccCch-hHHHHHHHhhhHHHhCCC
Confidence                13345667765 999996 9999998775 3444543

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.47  E-value=5.4e-14  Score=118.49  Aligned_cols=84  Identities=19%  Similarity=0.148  Sum_probs=61.3

Q ss_pred             EEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C------CC
Q 029679           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P------PD  150 (189)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~------~~  150 (189)
                      +++||++.        .+|+||||++.+|++++|+|+||||||||+++|+|+++   + +|++...+..  .      +.
T Consensus         2 ~~~~l~~~--------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~-~G~i~~~g~~i~~~~~~~~~~   69 (248)
T PRK03695          2 QLNDVAVS--------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---G-SGSIQFAGQPLEAWSAAELAR   69 (248)
T ss_pred             cccccchh--------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---C-CeEEEECCEecCcCCHHHHhh
Confidence            46677663        14779999999999999999999999999999999984   4 7886433221  0      12


Q ss_pred             eEEEEecCCCCCCCCccChhhhHHHH
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       151 ~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ..++++|+ ...+. .+++.+|+.+.
T Consensus        70 ~i~~v~q~-~~~~~-~~tv~~nl~~~   93 (248)
T PRK03695         70 HRAYLSQQ-QTPPF-AMPVFQYLTLH   93 (248)
T ss_pred             heEEeccc-CccCC-CccHHHHHHhc
Confidence            35677765 33333 37899998765

>PTZ00243 ABC transporter; Provisional

Probab=99.47  E-value=6.8e-14  Score=143.61  Aligned_cols=91  Identities=16%  Similarity=0.163  Sum_probs=73.7

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++||++.|+....  .+|+||||+|++||.+||||+||||||||+++|.|+++   +++|+|..++.+        .
T Consensus      1308 ~I~f~nVsf~Y~~~~~--~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGLP--LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred             eEEEEEEEEEeCCCCC--ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence            5999999999965322  36789999999999999999999999999999999999   999997544432        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~  175 (189)
                      ++..+++||+. .+|.  .|+++|+..
T Consensus      1383 R~~I~iVpQdp-~LF~--gTIreNIdp 1406 (1560)
T PTZ00243       1383 RRQFSMIPQDP-VLFD--GTVRQNVDP 1406 (1560)
T ss_pred             HhcceEECCCC-cccc--ccHHHHhCc
Confidence            45678899874 4554  489998853

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=7.9e-14  Score=129.45  Aligned_cols=92  Identities=17%  Similarity=0.161  Sum_probs=72.9

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC--------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~--------  148 (189)
                      .++++|+++.|+++.   .++.|+||++++|+.++|||+||||||||+++|+|+++   +++|++..++...        
T Consensus       320 ei~~~~l~~~y~~g~---~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~  393 (559)
T COG4988         320 EISLENLSFRYPDGK---PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAW  393 (559)
T ss_pred             eeeecceEEecCCCC---cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHH
Confidence            355669999998752   46779999999999999999999999999999999998   8999986655432        


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      ++...+++|++ +++.  -|++||+.++.
T Consensus       394 ~k~i~~v~Q~p-~lf~--gTireNi~l~~  419 (559)
T COG4988         394 RKQISWVSQNP-YLFA--GTIRENILLAR  419 (559)
T ss_pred             HhHeeeeCCCC-cccc--ccHHHHhhccC
Confidence            23467788763 4443  58999987643

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.47  E-value=2.2e-13  Score=126.82  Aligned_cols=92  Identities=20%  Similarity=0.150  Sum_probs=68.3

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEE
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~v  154 (189)
                      .++++++|+++.|+... ...+|++|||+|.+|++++|+|+||||||||+++|+|+++   |++|.+...+...     +
T Consensus        19 ~~mL~lknL~~~~~~~~-~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~-----~   89 (549)
T PRK13545         19 KPFDKLKDLFFRSKDGE-YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAA-----L   89 (549)
T ss_pred             cceeEEEEEEEecCCCc-cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEee-----e
Confidence            35788999988886531 1236789999999999999999999999999999999998   9999975443211     1


Q ss_pred             EecCCCCCCCCccChhhhHHHHH
Q 029679          155 LPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       155 v~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      +.+. ..+.. .+++.+|+.+..
T Consensus        90 i~~~-~~l~~-~lTV~EnL~l~~  110 (549)
T PRK13545         90 IAIS-SGLNG-QLTGIENIELKG  110 (549)
T ss_pred             EEec-cccCC-CCcHHHHHHhhh
Confidence            1111 22233 478999987644

>PLN03232 ABC transporter C family member; Provisional

Probab=99.47  E-value=7e-14  Score=143.07  Aligned_cols=91  Identities=18%  Similarity=0.174  Sum_probs=73.0

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++||++.|+...+  .+|+|+||+|++||.+||||+||||||||+++|.|+++   |++|+|..++.+        .
T Consensus      1234 ~I~f~nVsf~Y~~~~~--~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGLP--PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred             cEEEEEEEEEECCCCC--cccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence            5999999999964212  35789999999999999999999999999999999999   999998554432        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~  175 (189)
                      ++...++||+ ..+|.  .|+++|+..
T Consensus      1309 R~~i~iVpQd-p~LF~--gTIr~NL~~ 1332 (1495)
T PLN03232       1309 RRVLSIIPQS-PVLFS--GTVRFNIDP 1332 (1495)
T ss_pred             HhhcEEECCC-CeeeC--ccHHHHcCC
Confidence            4456888987 44454  488888854

>PLN03130 ABC transporter C family member; Provisional

Probab=99.46  E-value=8.2e-14  Score=143.38  Aligned_cols=91  Identities=15%  Similarity=0.177  Sum_probs=73.5

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++||+++|....+  .+|+||||+|++||.+||||+||||||||+++|.|+++   +++|+|..++.+        .
T Consensus      1237 ~I~f~nVsf~Y~~~~~--~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130       1237 SIKFEDVVLRYRPELP--PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred             cEEEEEEEEEeCCCCC--ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence            5999999999965212  35789999999999999999999999999999999999   999998554432        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~  175 (189)
                      ++...++||+. .+|.  -|+++|+..
T Consensus      1312 R~~IsiVpQdp-~LF~--GTIreNLd~ 1335 (1622)
T PLN03130       1312 RKVLGIIPQAP-VLFS--GTVRFNLDP 1335 (1622)
T ss_pred             HhccEEECCCC-cccc--ccHHHHhCc
Confidence            35578889874 4554  489999864

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.46  E-value=6.3e-14  Score=130.16  Aligned_cols=77  Identities=19%  Similarity=0.192  Sum_probs=62.9

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++|+++.|++. +  .+++|+||++++|++++|+|+||||||||+++|+|+++   |++|.+..++..        .
T Consensus       322 ~i~~~~v~f~y~~~-~--~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~  395 (547)
T PRK10522        322 TLELRNVTFAYQDN-G--FSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPEDY  395 (547)
T ss_pred             eEEEEEEEEEeCCC-C--eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHHHH
Confidence            69999999999742 2  25779999999999999999999999999999999998   999997543321        1


Q ss_pred             CCeEEEEecCC
Q 029679          149 PDVATVLPMDG  159 (189)
Q Consensus       149 ~~~~~vv~~~~  159 (189)
                      ++...+++|+.
T Consensus       396 ~~~i~~v~q~~  406 (547)
T PRK10522        396 RKLFSAVFTDF  406 (547)
T ss_pred             hhheEEEecCh
Confidence            34567788763

>PLN03211 ABC transporter G-25; Provisional

Probab=99.46  E-value=1e-13  Score=132.05  Aligned_cols=92  Identities=18%  Similarity=0.180  Sum_probs=69.3

Q ss_pred             EEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCC--ceeeccCCCC----CCCeE
Q 029679           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KASSFDSQVK----PPDVA  152 (189)
Q Consensus        79 ~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~--~G~i~~~~~~----~~~~~  152 (189)
                      .++|+++.|++  +  ..|+|||+++++||++||+|+||||||||+++|+|+++   ++  +|++..++..    ..+..
T Consensus        70 ~~~~l~~~~~~--~--~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~~~~i  142 (659)
T PLN03211         70 KISDETRQIQE--R--TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQILKRT  142 (659)
T ss_pred             ccccccccCCC--C--eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhhccce
Confidence            35567777764  2  35789999999999999999999999999999999987   54  7887443321    12346


Q ss_pred             EEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          153 TVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       153 ~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                      ++++|+ ..+++ .+|+.||+.+....
T Consensus       143 ~yv~Q~-~~l~~-~lTV~E~l~~~a~~  167 (659)
T PLN03211        143 GFVTQD-DILYP-HLTVRETLVFCSLL  167 (659)
T ss_pred             EEECcc-cccCC-cCCHHHHHHHHHHh
Confidence            788876 44454 48999999987543

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.46  E-value=1.9e-14  Score=109.54  Aligned_cols=71  Identities=24%  Similarity=0.346  Sum_probs=55.2

Q ss_pred             cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------CCCeEEEEecCCCCCCCCccC
Q 029679           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------PPDVATVLPMDGFHLYLSQLD  168 (189)
Q Consensus        97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~~~~~~vv~~~~~~l~~~~lt  168 (189)
                      |+||||++.+|++++|+|+||||||||+++|+|+.+   +.+|.+...+..        .+....+++++ ..++. .++
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~-~~t   75 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDISDIDIEELRRRIGYVPQD-PQLFP-GLT   75 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGTTSHHHHHHHTEEEEESS-HCHHT-TSB
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccccc---ccccccccccccccccccccccccccccccc-ccccc-ccc
Confidence            579999999999999999999999999999999998   889987443321        12345677766 44444 367


Q ss_pred             hhhh
Q 029679          169 AMED  172 (189)
Q Consensus       169 v~en  172 (189)
                      +.+|
T Consensus        76 v~~~   79 (137)
T PF00005_consen   76 VREN   79 (137)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            7776

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.46  E-value=4.3e-14  Score=115.74  Aligned_cols=61  Identities=18%  Similarity=0.387  Sum_probs=55.3

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF  142 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~  142 (189)
                      .|++++.+++|.|+..    ...+||||++.+||++||||+||||||||+++|++-+.   |+.|++.
T Consensus         4 ~PLL~V~~lsk~Yg~~----~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~   64 (258)
T COG4107           4 KPLLSVSGLSKLYGPG----KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVT   64 (258)
T ss_pred             CcceeehhhhhhhCCC----cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEE
Confidence            4689999999999874    35679999999999999999999999999999999998   9999863

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.46  E-value=2.2e-13  Score=138.66  Aligned_cols=103  Identities=13%  Similarity=0.065  Sum_probs=76.5

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC----CCCe
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----PPDV  151 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~----~~~~  151 (189)
                      .+++++||++.|+.......+|+|||+++++||+++|+|+||||||||+++|+|+.++-.+++|++..++..    .++.
T Consensus       758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~  837 (1394)
T TIGR00956       758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS  837 (1394)
T ss_pred             ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence            368999999999532112246789999999999999999999999999999999985222467887443321    2345


Q ss_pred             EEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (189)
Q Consensus       152 ~~vv~~~~~~l~~~~ltv~enl~~~~~~~  180 (189)
                      .++++|+.. +++ .+||+||+.+....+
T Consensus       838 i~yv~Q~~~-~~~-~~Tv~E~L~~~a~l~  864 (1394)
T TIGR00956       838 IGYVQQQDL-HLP-TSTVRESLRFSAYLR  864 (1394)
T ss_pred             eeeeccccc-CCC-CCCHHHHHHHHHHhC
Confidence            678887643 344 489999999876544

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.44  E-value=1.5e-13  Score=140.76  Aligned_cols=90  Identities=21%  Similarity=0.182  Sum_probs=72.9

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++||++.|+...+  .+|+||||+|++||.+||||+||||||||+++|.|+++   +++|+|..++.+        .
T Consensus      1284 ~I~f~nVsf~Y~~~~~--~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957      1284 RVEFRNYCLRYREDLD--LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred             cEEEEEEEEEeCCCCc--ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence            5999999999975322  36889999999999999999999999999999999999   999998554432        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPK  174 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~  174 (189)
                      ++...++||+ ..+|.  -|+++|+.
T Consensus      1359 R~~i~iVpQd-p~LF~--gTIr~NLd 1381 (1522)
T TIGR00957      1359 RFKITIIPQD-PVLFS--GSLRMNLD 1381 (1522)
T ss_pred             HhcCeEECCC-CcccC--ccHHHHcC
Confidence            4557888987 44444  48888885

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.44  E-value=1.7e-13  Score=125.61  Aligned_cols=61  Identities=13%  Similarity=0.198  Sum_probs=53.7

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS  144 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~  144 (189)
                      .++|+++|+++.+.      .++++|||+|++||+++|+|+||||||||+|+|+|+++   |++|.+...
T Consensus       248 ~~~i~~~~l~~~~~------~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~  308 (491)
T PRK10982        248 EVILEVRNLTSLRQ------PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLH  308 (491)
T ss_pred             CcEEEEeCcccccC------cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEEC
Confidence            45899999998741      25779999999999999999999999999999999998   899997544

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.44  E-value=4.8e-13  Score=124.65  Aligned_cols=90  Identities=19%  Similarity=0.239  Sum_probs=69.4

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEE
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~v  154 (189)
                      |.+|+++++++.|+.  +.+  ++++||++.+|+.+||||+||||||||||+|+|.+.   +++|+|.....   -..++
T Consensus         1 m~~i~~~~ls~~~g~--~~l--~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~~---~~v~~   70 (530)
T COG0488           1 MSMITLENLSLAYGD--RPL--LENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPKG---LRVGY   70 (530)
T ss_pred             CceEEEeeeEEeeCC--cee--ecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecCC---ceEEE
Confidence            458999999999976  334  569999999999999999999999999999999998   99998754321   23566


Q ss_pred             EecCCCCCCCCccChhhhHHHH
Q 029679          155 LPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       155 v~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++|+ ..... ..++.+.+..+
T Consensus        71 l~Q~-~~~~~-~~tv~~~v~~~   90 (530)
T COG0488          71 LSQE-PPLDP-EKTVLDYVIEG   90 (530)
T ss_pred             eCCC-CCcCC-CccHHHHHHhh
Confidence            6765 33332 35777766554

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.42  E-value=2.1e-13  Score=127.12  Aligned_cols=80  Identities=20%  Similarity=0.145  Sum_probs=62.8

Q ss_pred             eEEEeeeEEEcCccc-eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      .|+++||++.|++.. ....+|+|+||++++|++++|+|+||||||||+++|+|++.   |++|.+..++..        
T Consensus       337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~~~~~~  413 (555)
T TIGR01194       337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSADSRDD  413 (555)
T ss_pred             eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence            599999999997521 11235789999999999999999999999999999999998   999997544322        


Q ss_pred             CCCeEEEEecCC
Q 029679          148 PPDVATVLPMDG  159 (189)
Q Consensus       148 ~~~~~~vv~~~~  159 (189)
                      .++...+++|+.
T Consensus       414 ~~~~i~~v~q~~  425 (555)
T TIGR01194       414 YRDLFSAIFADF  425 (555)
T ss_pred             HHhhCcEEccCh
Confidence            123456777663

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.42  E-value=1.4e-13  Score=118.69  Aligned_cols=69  Identities=17%  Similarity=0.244  Sum_probs=57.3

Q ss_pred             CeEEEeeeEEEcCc-----------------cceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCc
Q 029679           76 PVVEARCMDEVYDA-----------------LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK  138 (189)
Q Consensus        76 ~~l~~~~l~~~~~~-----------------~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~  138 (189)
                      .++.++|++|.|.-                 ..+.+.||.||||+|++|++++++|+||+||||++|||+|++.   |++
T Consensus         2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~   78 (325)
T COG4586           2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTS   78 (325)
T ss_pred             ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCC
Confidence            36788888888831                 0123568999999999999999999999999999999999998   999


Q ss_pred             eeeccCCCC
Q 029679          139 ASSFDSQVK  147 (189)
Q Consensus       139 G~i~~~~~~  147 (189)
                      |.+..++..
T Consensus        79 G~v~V~G~~   87 (325)
T COG4586          79 GKVRVNGKD   87 (325)
T ss_pred             CeEEecCcC
Confidence            998665544

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.42  E-value=9.2e-14  Score=116.48  Aligned_cols=100  Identities=17%  Similarity=0.180  Sum_probs=75.3

Q ss_pred             eEEEeeeEEEcCcc-ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC-------
Q 029679           77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~-~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~-------  148 (189)
                      |+.+.|+.+.|... ...-.+++++||+|.+|+++-|+|.||+|||||+++|+|-+.   +++|.|...+.+.       
T Consensus         1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~   77 (263)
T COG1101           1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAK   77 (263)
T ss_pred             CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHH
Confidence            46778888888543 222356789999999999999999999999999999999998   9999986544321       


Q ss_pred             -CCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       149 -~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                       .....-++|+...-....+|+.||++++..+
T Consensus        78 RA~~larVfQdp~~gt~~~lTieENl~la~~R  109 (263)
T COG1101          78 RANLLARVFQDPLAGTAPELTIEENLALAESR  109 (263)
T ss_pred             HhhHHHHHhcchhhCCcccccHHHHHHHHHhc
Confidence             1112224677555444569999999987644

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.42  E-value=1.2e-13  Score=114.55  Aligned_cols=62  Identities=19%  Similarity=0.301  Sum_probs=55.5

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ  145 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~  145 (189)
                      |++++|++|.|+..    .+|+++|++|++|.+++|+||||+|||||+.++++|++   .++|.+...+
T Consensus         1 MI~i~nv~K~y~~~----~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g   62 (252)
T COG4604           1 MITIENVSKSYGTK----VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDG   62 (252)
T ss_pred             CeeehhhhHhhCCE----EeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEee
Confidence            58999999999873    35779999999999999999999999999999999999   9999975443

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.42  E-value=2.4e-13  Score=125.06  Aligned_cols=90  Identities=14%  Similarity=0.080  Sum_probs=67.8

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C----
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P----  148 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~----  148 (189)
                      .+++++++++.  .      ..++|+||+|++||+++|+|+||||||||+|+|+|+++   |++|.+...+..  .    
T Consensus       255 ~~~l~~~~~~~--~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~  323 (501)
T PRK11288        255 EVRLRLDGLKG--P------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPR  323 (501)
T ss_pred             CcEEEEecccc--C------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHH
Confidence            35799999972  2      24679999999999999999999999999999999998   899997543211  1    


Q ss_pred             ---CCeEEEEecCCC--CCCCCccChhhhHHHH
Q 029679          149 ---PDVATVLPMDGF--HLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ---~~~~~vv~~~~~--~l~~~~ltv~enl~~~  176 (189)
                         +...++++|+..  .++. .+++.+|+.+.
T Consensus       324 ~~~~~~i~~~~q~~~~~~~~~-~~tv~e~l~~~  355 (501)
T PRK11288        324 DAIRAGIMLCPEDRKAEGIIP-VHSVADNINIS  355 (501)
T ss_pred             HHHhCCCEEcCcCHhhCCCcC-CCCHHHHhccc
Confidence               123567776531  2444 38899998764

>PLN03073 ABC transporter F family; Provisional

Probab=99.42  E-value=4.6e-13  Score=128.70  Aligned_cols=75  Identities=20%  Similarity=0.302  Sum_probs=61.9

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEE
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~v  154 (189)
                      .++|+++|+++.|++. +  .+++|+||+|.+|++++|+|+||||||||+|+|+|+++   |++|.+....   +...+|
T Consensus       506 ~~~L~~~~ls~~y~~~-~--~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~---~~~igy  576 (718)
T PLN03073        506 PPIISFSDASFGYPGG-P--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSA---KVRMAV  576 (718)
T ss_pred             CceEEEEeeEEEeCCC-C--eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECC---ceeEEE
Confidence            4689999999999642 1  25679999999999999999999999999999999998   9999986432   223566


Q ss_pred             EecC
Q 029679          155 LPMD  158 (189)
Q Consensus       155 v~~~  158 (189)
                      ++|+
T Consensus       577 v~Q~  580 (718)
T PLN03073        577 FSQH  580 (718)
T ss_pred             Eecc
Confidence            7765

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.41  E-value=3.7e-13  Score=124.23  Aligned_cols=89  Identities=21%  Similarity=0.227  Sum_probs=66.7

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C---
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P---  148 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~---  148 (189)
                      ..++|+++|+++   .      .+++|||+|++|++++|+|+||||||||+|+|+|+++   |++|.+...+..  .   
T Consensus       265 ~~~~l~~~~l~~---~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~  332 (510)
T PRK15439        265 GAPVLTVEDLTG---E------GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALST  332 (510)
T ss_pred             CCceEEEeCCCC---C------CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCH
Confidence            345899999983   1      3679999999999999999999999999999999998   889987443311  1   


Q ss_pred             ----CCeEEEEecCC--CCCCCCccChhhhHHH
Q 029679          149 ----PDVATVLPMDG--FHLYLSQLDAMEDPKE  175 (189)
Q Consensus       149 ----~~~~~vv~~~~--~~l~~~~ltv~enl~~  175 (189)
                          +....|++|+.  ..+++ .+++.+|+..
T Consensus       333 ~~~~~~~i~~v~q~~~~~~l~~-~~t~~~~l~~  364 (510)
T PRK15439        333 AQRLARGLVYLPEDRQSSGLYL-DAPLAWNVCA  364 (510)
T ss_pred             HHHHhCCcEECCCChhhCCccC-CCcHHHHHHh
Confidence                12356777652  23444 3788888753

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.41  E-value=1.1e-12  Score=118.40  Aligned_cols=106  Identities=12%  Similarity=0.158  Sum_probs=76.6

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc--cCCCceee-ccCCCC---
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKASS-FDSQVK---  147 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~--~~p~~G~i-~~~~~~---  147 (189)
                      .+++|+++|+++.|......+.+|++|||+|.+||++||||+||||||-.++.|+||++.  ...-+|++ +++...   
T Consensus         3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~   82 (534)
T COG4172           3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA   82 (534)
T ss_pred             CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence            457899999999996543456789999999999999999999999999999999999963  22334555 333211   


Q ss_pred             --------CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 --------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                              +-+.+.++||....-..+..++...+...++.
T Consensus        83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~  122 (534)
T COG4172          83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRL  122 (534)
T ss_pred             CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHH
Confidence                    22345667766554443345677777776543

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.40  E-value=2.9e-13  Score=109.79  Aligned_cols=56  Identities=18%  Similarity=0.213  Sum_probs=48.0

Q ss_pred             eeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS  144 (189)
Q Consensus        81 ~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~  144 (189)
                      .|+++.|++  +.  ++++ +|++++||+++|+|+||||||||+|+|+|+++   |++|.+...
T Consensus         4 ~~l~~~~~~--~~--~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~   59 (177)
T cd03222           4 PDCVKRYGV--FF--LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDNDEWD   59 (177)
T ss_pred             CCeEEEECC--EE--EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcEEEEC
Confidence            578999976  22  3556 49999999999999999999999999999998   999997543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.39  E-value=4.4e-13  Score=133.03  Aligned_cols=93  Identities=19%  Similarity=0.203  Sum_probs=76.6

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      -|+++||++.|+.. ..+..++|+||++++|+++||||||||||||...+|-+++.   |.+|.+...+.+        .
T Consensus       987 ~I~~~~V~F~YPsR-P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTR-PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred             EEEEeeeEeeCCCC-CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence            39999999999864 44678899999999999999999999999999999999998   999997443322        1


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      |...++|.|. ..+|.  -|++||+.++
T Consensus      1063 R~~i~lVsQE-P~LF~--~TIrENI~YG 1087 (1228)
T KOG0055|consen 1063 RKQIGLVSQE-PVLFN--GTIRENIAYG 1087 (1228)
T ss_pred             HHhcceeccC-chhhc--ccHHHHHhcc
Confidence            3445667654 66775  5999999998

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.39  E-value=4.2e-13  Score=123.39  Aligned_cols=90  Identities=23%  Similarity=0.233  Sum_probs=69.4

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      -|+++||++.|... +  ..|+||||++.+|+++|||||||+||||++|+|.++..   .++|.|...+.+        .
T Consensus       537 ~i~fsnvtF~Y~p~-k--~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnvt~~SL  610 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPG-K--PVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNVTQSSL  610 (790)
T ss_pred             eEEEEEeEEecCCC-C--ceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHHHHHHH
Confidence            59999999999764 3  34669999999999999999999999999999999998   889987444332        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~  175 (189)
                      +..++++|||.. +|.  -|+..|+.+
T Consensus       611 Rs~IGVVPQDtv-LFN--dTI~yNIry  634 (790)
T KOG0056|consen  611 RSSIGVVPQDTV-LFN--DTILYNIRY  634 (790)
T ss_pred             HHhcCcccCcce-eec--ceeeeheee
Confidence            345688898743 332  245555544

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.39  E-value=7e-13  Score=135.77  Aligned_cols=89  Identities=19%  Similarity=0.243  Sum_probs=70.7

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .|+++||+++|+...+  .+|+||||+|++||.+||||+||||||||+++|+|++.    .+|+|..++.+        .
T Consensus      1217 ~I~f~nVs~~Y~~~~~--~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~----~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271      1217 QMDVQGLTAKYTEAGR--AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS----TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred             eEEEEEEEEEeCCCCc--ceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC----CCcEEEECCEEcccCCHHHH
Confidence            5999999999975322  36789999999999999999999999999999999984    57887544422        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPK  174 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~  174 (189)
                      ++...++||+ ..+|.  -|+++|+.
T Consensus      1291 R~~is~IpQd-p~LF~--GTIR~NLd 1313 (1490)
T TIGR01271      1291 RKAFGVIPQK-VFIFS--GTFRKNLD 1313 (1490)
T ss_pred             HhceEEEeCC-CccCc--cCHHHHhC
Confidence            4457888987 44554  48999985

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.37  E-value=9e-13  Score=103.31  Aligned_cols=58  Identities=22%  Similarity=0.374  Sum_probs=50.7

Q ss_pred             EeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS  144 (189)
Q Consensus        80 ~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~  144 (189)
                      ++++++.|.+  +  .+++++||++.+|++++|+|+||||||||+++|+|+++   +..|++...
T Consensus         2 ~~~~~~~~~~--~--~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~   59 (157)
T cd00267           2 IENLSFRYGG--R--TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILID   59 (157)
T ss_pred             eEEEEEEeCC--e--eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEEC
Confidence            5789999965  2  35779999999999999999999999999999999998   888887543

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=1.8e-12  Score=109.32  Aligned_cols=99  Identities=14%  Similarity=0.097  Sum_probs=69.3

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-------  147 (189)
                      +.+|+++|+.....+. +  ..|++|||+|++||+.+|+||||||||||+++|+|.- .+-.++|.+...+.+       
T Consensus         1 m~~L~I~dLhv~v~~~-k--eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p-~Y~Vt~G~I~~~GedI~~l~~~   76 (251)
T COG0396           1 MMMLEIKDLHVEVEGK-K--EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP-KYEVTEGEILFDGEDILELSPD   76 (251)
T ss_pred             CceeEEeeeEEEecCc-h--hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC-CceEecceEEECCcccccCCHh
Confidence            3579999999998762 1  3577999999999999999999999999999999965 355788887443322       


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHHH
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                       +.+...++-+|...-++ ..++.+.+..+..
T Consensus        77 ERAr~GifLafQ~P~ei~-GV~~~~fLr~a~n  107 (251)
T COG0396          77 ERARAGIFLAFQYPVEIP-GVTNSDFLRAAMN  107 (251)
T ss_pred             HHHhcCCEEeecCCccCC-CeeHHHHHHHHHH
Confidence             12223333334233334 3666666665554

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.36  E-value=2e-12  Score=109.39  Aligned_cols=72  Identities=14%  Similarity=0.187  Sum_probs=53.7

Q ss_pred             cccceeEec-----CCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEecCCCCCCCCccChhh
Q 029679           97 TSALASNVN-----VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAME  171 (189)
Q Consensus        97 l~~vsl~i~-----~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~~~~~l~~~~ltv~e  171 (189)
                      +.+++|++.     +||+++|+|+||||||||+++|+|+++   |++|++...+.    ...+++|+ ..... .+++.+
T Consensus        10 ~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~----~i~~~~q~-~~~~~-~~tv~e   80 (246)
T cd03237          10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELD----TVSYKPQY-IKADY-EGTVRD   80 (246)
T ss_pred             cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCc----eEEEeccc-ccCCC-CCCHHH
Confidence            345666665     799999999999999999999999998   89998754432    35566655 33333 378999


Q ss_pred             hHHHHH
Q 029679          172 DPKEAH  177 (189)
Q Consensus       172 nl~~~~  177 (189)
                      |+.+..
T Consensus        81 ~l~~~~   86 (246)
T cd03237          81 LLSSIT   86 (246)
T ss_pred             HHHHHh
Confidence            886543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PLN03130 ABC transporter C family member; Provisional

Probab=99.35  E-value=1.9e-12  Score=133.43  Aligned_cols=89  Identities=18%  Similarity=0.255  Sum_probs=71.9

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCc-eeeccCCCCCCCeEEE
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATV  154 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~-G~i~~~~~~~~~~~~v  154 (189)
                      ..|+++|+++.|+... ....|+|+||++++|+.++|+|+||||||||+++|+|+++   +.+ |.+..     +....|
T Consensus       613 ~~I~~~nvsf~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l-----~~~Iay  683 (1622)
T PLN03130        613 PAISIKNGYFSWDSKA-ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVI-----RGTVAY  683 (1622)
T ss_pred             CceEEEeeEEEccCCC-CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEE-----cCeEEE
Confidence            3699999999997421 1135789999999999999999999999999999999998   888 78752     345678


Q ss_pred             EecCCCCCCCCccChhhhHHHH
Q 029679          155 LPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       155 v~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++|+ ..++.  .|++||+.++
T Consensus       684 v~Q~-p~Lfn--gTIreNI~fg  702 (1622)
T PLN03130        684 VPQV-SWIFN--ATVRDNILFG  702 (1622)
T ss_pred             EcCc-cccCC--CCHHHHHhCC
Confidence            8876 44443  6999999975

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.35  E-value=4.3e-13  Score=116.15  Aligned_cols=88  Identities=13%  Similarity=0.125  Sum_probs=69.5

Q ss_pred             eeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------------CC
Q 029679           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------------PP  149 (189)
Q Consensus        82 ~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------------~~  149 (189)
                      |+.+.++.+     +| +++|+++.-.++||.|.||||||||+|+|+||.+   |+.|.|..++..            .+
T Consensus         5 ~~~~~lG~~-----~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~   75 (352)
T COG4148           5 NFRQRLGNF-----AL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK   75 (352)
T ss_pred             ehhhhcCce-----EE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence            355555552     33 7899999878999999999999999999999999   999987443321            24


Q ss_pred             CeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (189)
Q Consensus       150 ~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~  180 (189)
                      +..+|+||| ..+|++ ++|..|+.|+.+..
T Consensus        76 RriGYVFQD-ARLFpH-~tVrgNL~YG~~~~  104 (352)
T COG4148          76 RRIGYVFQD-ARLFPH-YTVRGNLRYGMWKS  104 (352)
T ss_pred             heeeeEeec-cccccc-eEEecchhhhhccc
Confidence            567888876 888885 99999999987543

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.35  E-value=1.8e-12  Score=132.98  Aligned_cols=87  Identities=10%  Similarity=0.114  Sum_probs=71.5

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEe
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~  156 (189)
                      .++++|+++.|+...+  .+|+|+||++++|++++|+|+||||||||+++|+|+++   +.+|++...+     ...|++
T Consensus       636 ~i~~~~~~~~~~~~~~--~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g-----~i~yv~  705 (1522)
T TIGR00957       636 SITVHNATFTWARDLP--PTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKG-----SVAYVP  705 (1522)
T ss_pred             cEEEEEeEEEcCCCCC--ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECC-----EEEEEc
Confidence            6999999999975212  35779999999999999999999999999999999998   8999975432     367788


Q ss_pred             cCCCCCCCCccChhhhHHHH
Q 029679          157 MDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       157 ~~~~~l~~~~ltv~enl~~~  176 (189)
                      |+. .++.  .|+++|+.++
T Consensus       706 Q~~-~l~~--~Ti~eNI~~g  722 (1522)
T TIGR00957       706 QQA-WIQN--DSLRENILFG  722 (1522)
T ss_pred             CCc-cccC--CcHHHHhhcC
Confidence            763 3443  6999999874

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.35  E-value=1.5e-12  Score=133.39  Aligned_cols=90  Identities=14%  Similarity=0.173  Sum_probs=71.1

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEe
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~  156 (189)
                      .++++|+++.|+... ....|+|+||++++|+.++|+|+||||||||+++|+|+++   +.+|.+..    .+....|++
T Consensus       614 ~I~~~~vsF~y~~~~-~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~----~~~~Iayv~  685 (1495)
T PLN03232        614 AISIKNGYFSWDSKT-SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVV----IRGSVAYVP  685 (1495)
T ss_pred             cEEEEeeEEEcCCCC-CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEE----ecCcEEEEc
Confidence            599999999997421 1135789999999999999999999999999999999998   87775431    234567788


Q ss_pred             cCCCCCCCCccChhhhHHHHH
Q 029679          157 MDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       157 ~~~~~l~~~~ltv~enl~~~~  177 (189)
                      |+ ..++.  .|++||+.++.
T Consensus       686 Q~-p~Lf~--gTIreNI~fg~  703 (1495)
T PLN03232        686 QV-SWIFN--ATVRENILFGS  703 (1495)
T ss_pred             Cc-ccccc--ccHHHHhhcCC
Confidence            76 44443  58999999753

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.34  E-value=2.3e-12  Score=106.89  Aligned_cols=72  Identities=19%  Similarity=0.228  Sum_probs=53.0

Q ss_pred             eEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC---CCCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       102 l~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~---~~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      |++++||+++|+|+||||||||+++|+|+++   +++|++...+..   .++..+|++|+........+++.+|+.+.
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~   75 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSG   75 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhc
Confidence            5788999999999999999999999999998   899997544432   12345677765322111126888888764

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.32  E-value=1.2e-12  Score=111.46  Aligned_cols=55  Identities=22%  Similarity=0.260  Sum_probs=48.0

Q ss_pred             eeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec
Q 029679           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF  142 (189)
Q Consensus        81 ~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~  142 (189)
                      .+++++|+..   ..+++|+|+ +.+|++++|+|+||||||||+++|+|+++   |++|.+.
T Consensus         4 ~~~~~~y~~~---~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~   58 (255)
T cd03236           4 DEPVHRYGPN---SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFD   58 (255)
T ss_pred             cCcceeecCc---chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEe
Confidence            4688999652   146789995 99999999999999999999999999998   9999984

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.32  E-value=6.2e-12  Score=117.29  Aligned_cols=92  Identities=20%  Similarity=0.205  Sum_probs=70.5

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEE
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT  153 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~  153 (189)
                      ..++++++|+++.|++. +.  .++++||.|.+|+.+||||+||+|||||+|+|+|...   +.+|.+..+..   -..+
T Consensus       318 g~~vl~~~~~~~~y~~~-~~--l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~~---v~ig  388 (530)
T COG0488         318 GKLVLEFENVSKGYDGG-RL--LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGET---VKIG  388 (530)
T ss_pred             CCeeEEEeccccccCCC-ce--eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCCc---eEEE
Confidence            45689999999999763 23  3569999999999999999999999999999999998   77888754421   2356


Q ss_pred             EEecCCCCCCCCccChhhhHHH
Q 029679          154 VLPMDGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus       154 vv~~~~~~l~~~~ltv~enl~~  175 (189)
                      |+.|....+. ...++.+++..
T Consensus       389 yf~Q~~~~l~-~~~t~~d~l~~  409 (530)
T COG0488         389 YFDQHRDELD-PDKTVLEELSE  409 (530)
T ss_pred             EEEehhhhcC-ccCcHHHHHHh
Confidence            7776643444 33577776554

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.31  E-value=2.6e-12  Score=121.36  Aligned_cols=84  Identities=17%  Similarity=0.126  Sum_probs=63.1

Q ss_pred             cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----CCCeEEEEecCCCCCCCCccCh
Q 029679           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDVATVLPMDGFHLYLSQLDA  169 (189)
Q Consensus        95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~~~~~~vv~~~~~~l~~~~ltv  169 (189)
                      ..|+|||+++++||+++|+|+||||||||+++|+|+..+-...+|++..++..     .++..++++|+. .+++ .+||
T Consensus        39 ~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~-~~~~-~lTV  116 (617)
T TIGR00955        39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDD-LFIP-TLTV  116 (617)
T ss_pred             ccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeecccc-ccCc-cCcH
Confidence            46789999999999999999999999999999999986111136776444322     134567888774 3444 4899


Q ss_pred             hhhHHHHHHHc
Q 029679          170 MEDPKEAHARR  180 (189)
Q Consensus       170 ~enl~~~~~~~  180 (189)
                      +||+.+....+
T Consensus       117 ~e~l~f~~~~~  127 (617)
T TIGR00955       117 REHLMFQAHLR  127 (617)
T ss_pred             HHHHHHHHhcC
Confidence            99999987643

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.31  E-value=2.1e-12  Score=105.31  Aligned_cols=64  Identities=23%  Similarity=0.315  Sum_probs=54.5

Q ss_pred             eEEEeeeEEEcCcc---ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc
Q 029679           77 VVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD  143 (189)
Q Consensus        77 ~l~~~~l~~~~~~~---~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~  143 (189)
                      .|.++|++|+|--.   .-.+..+++|||++..||++++-|+||+|||||+|+|.|-+.   +++|.|+.
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v   70 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILV   70 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEE
Confidence            58999999999321   123456779999999999999999999999999999999887   99999754

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.30  E-value=5.2e-12  Score=107.25  Aligned_cols=62  Identities=23%  Similarity=0.325  Sum_probs=54.5

Q ss_pred             CCCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679           73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus        73 ~~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i  141 (189)
                      ..+++|+++|+++.|++  +.  .|+|+|++|++||--+|+|+||||||||+++|+|.+.   |.+|.+
T Consensus        27 ~~~~li~l~~v~v~r~g--k~--iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~   88 (257)
T COG1119          27 INEPLIELKNVSVRRNG--KK--ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDV   88 (257)
T ss_pred             CCcceEEecceEEEECC--Ee--eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCce
Confidence            35578999999999987  33  5679999999999999999999999999999999997   666654

>PLN03140 ABC transporter G family member; Provisional

Probab=99.29  E-value=9.8e-12  Score=127.18  Aligned_cols=100  Identities=15%  Similarity=0.031  Sum_probs=72.6

Q ss_pred             eEEEeeeEEEcCcc---------ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC
Q 029679           77 VVEARCMDEVYDAL---------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK  147 (189)
Q Consensus        77 ~l~~~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~  147 (189)
                      .+.++||++.....         ......|+|||+.+++|++++|+|+||||||||+++|+|+... -..+|.+..++..
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~-g~~~G~I~inG~~  945 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIRISGFP  945 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCC-CcccceEEECCcc
Confidence            58999999887421         0123468899999999999999999999999999999998741 0246776433321


Q ss_pred             -----CCCeEEEEecCCCCCCCCccChhhhHHHHHHH
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (189)
Q Consensus       148 -----~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~  179 (189)
                           .++..+|++|+. .+++ .+||+||+.+.+..
T Consensus       946 ~~~~~~~~~igyv~Q~d-~~~~-~lTV~E~L~~~a~l  980 (1470)
T PLN03140        946 KKQETFARISGYCEQND-IHSP-QVTVRESLIYSAFL  980 (1470)
T ss_pred             CChHHhhhheEEEcccc-ccCC-CCcHHHHHHHHHHh
Confidence                 124467888764 3444 48999999987644

>PLN03073 ABC transporter F family; Provisional

Probab=99.29  E-value=4.3e-12  Score=122.06  Aligned_cols=64  Identities=14%  Similarity=0.148  Sum_probs=52.1

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i  141 (189)
                      ...+|+++|+++.|++  +.  .|+|+||+|.+|+++||||+||||||||+|+|+|+...-.|.+|++
T Consensus       174 ~~~~I~i~nls~~y~~--~~--ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I  237 (718)
T PLN03073        174 AIKDIHMENFSISVGG--RD--LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQI  237 (718)
T ss_pred             CceeEEEceEEEEeCC--CE--EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEE
Confidence            3457999999999975  22  5779999999999999999999999999999999641012555654

>PLN03140 ABC transporter G family member; Provisional

Probab=99.28  E-value=7.5e-12  Score=128.05  Aligned_cols=83  Identities=16%  Similarity=0.230  Sum_probs=65.1

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCC---ceeeccCCCC-----CCCeEEEEecCCCCCCCC
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVK-----PPDVATVLPMDGFHLYLS  165 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~---~G~i~~~~~~-----~~~~~~vv~~~~~~l~~~  165 (189)
                      ...|+|||+.+++||+++|+|+||||||||+|+|+|++.   ++   +|++..++..     .++...|++|+. .+++ 
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d-~~~~-  252 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAYISQND-VHVG-  252 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEEecccc-cCCC-
Confidence            346889999999999999999999999999999999997   65   7887443321     234567788763 3444 


Q ss_pred             ccChhhhHHHHHHHcC
Q 029679          166 QLDAMEDPKEAHARRG  181 (189)
Q Consensus       166 ~ltv~enl~~~~~~~g  181 (189)
                      .+||.||+.++++.++
T Consensus       253 ~lTV~EtL~f~a~~~~  268 (1470)
T PLN03140        253 VMTVKETLDFSARCQG  268 (1470)
T ss_pred             cCcHHHHHHHHHHhcC
Confidence            4999999999876543

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.28  E-value=1.6e-11  Score=116.30  Aligned_cols=102  Identities=15%  Similarity=0.134  Sum_probs=76.4

Q ss_pred             eEEEeeeEEEcCccc-eeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----CCC
Q 029679           77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPD  150 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~-~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~~~  150 (189)
                      -+.+++++....... .....|+|||..+++||++||+|+||||||||+++|+|....-...+|.+..++..     -+.
T Consensus        25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~  104 (613)
T KOG0061|consen   25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK  104 (613)
T ss_pred             eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence            477888887765431 12345789999999999999999999999999999999986322467887555421     244


Q ss_pred             eEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (189)
Q Consensus       151 ~~~vv~~~~~~l~~~~ltv~enl~~~~~~~  180 (189)
                      ..+|+.|+ ..+++ .+||+|++.+.+..+
T Consensus       105 ~s~yV~Qd-D~l~~-~LTV~EtL~f~A~lr  132 (613)
T KOG0061|consen  105 ISGYVQQD-DVLLP-TLTVRETLRFSALLR  132 (613)
T ss_pred             eeEEEccc-ccccc-cccHHHHHHHHHHhc
Confidence            67788876 44445 499999999988765

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.26  E-value=5.5e-12  Score=123.73  Aligned_cols=101  Identities=19%  Similarity=0.149  Sum_probs=83.3

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------  147 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------  147 (189)
                      ..+.++++++.|+...+   |++++||.|++||+.|+.|+|||||||+++||+|...   +++|.++..+..        
T Consensus       563 ~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~~~  636 (885)
T KOG0059|consen  563 SALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTDFQ  636 (885)
T ss_pred             ceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccchh
Confidence            46899999999987422   8899999999999999999999999999999999998   999997553322        


Q ss_pred             -CCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCCC
Q 029679          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV  184 (189)
Q Consensus       148 -~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~~  184 (189)
                       .+...+|.||. ..++. .+|.+|.+.+..+.+|.++
T Consensus       637 ~~~~~iGyCPQ~-d~l~~-~lT~rEhL~~~arlrG~~~  672 (885)
T KOG0059|consen  637 QVRKQLGYCPQF-DALWE-ELTGREHLEFYARLRGLPR  672 (885)
T ss_pred             hhhhhcccCCch-hhhhh-hccHHHHHHHHHHHcCCCh
Confidence             23346788865 45555 5999999999999998764

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.22  E-value=1.6e-11  Score=110.75  Aligned_cols=62  Identities=26%  Similarity=0.302  Sum_probs=55.3

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS  144 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~  144 (189)
                      -|+++|+.+.|....   +.|..||++|++||++-|+|.||||||||+++|+||+.   |++|.|..+
T Consensus       322 ~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~I~ld  383 (546)
T COG4615         322 TLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLD  383 (546)
T ss_pred             ceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCceeEC
Confidence            599999999997631   45779999999999999999999999999999999999   999997443

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.22  E-value=2.5e-11  Score=123.80  Aligned_cols=84  Identities=12%  Similarity=0.011  Sum_probs=63.9

Q ss_pred             cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc-cCCCceeeccCCCC-------CCCeEEEEecCCCCCCCCc
Q 029679           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKASSFDSQVK-------PPDVATVLPMDGFHLYLSQ  166 (189)
Q Consensus        95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~-~~p~~G~i~~~~~~-------~~~~~~vv~~~~~~l~~~~  166 (189)
                      ..|+|||+.+++||+++|+|+||||||||+|+|+|+..+ ..+.+|++..++..       .+....+++|+ ..+++ .
T Consensus        75 ~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~-d~~~~-~  152 (1394)
T TIGR00956        75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAET-DVHFP-H  152 (1394)
T ss_pred             eeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccc-cccCC-C
Confidence            468899999999999999999999999999999999732 12578887544321       12346777776 34444 4


Q ss_pred             cChhhhHHHHHHHc
Q 029679          167 LDAMEDPKEAHARR  180 (189)
Q Consensus       167 ltv~enl~~~~~~~  180 (189)
                      +||.||+.++++.+
T Consensus       153 lTV~E~l~f~~~~~  166 (1394)
T TIGR00956       153 LTVGETLDFAARCK  166 (1394)
T ss_pred             CCHHHHHHHHHHhC
Confidence            89999999987644

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.21  E-value=2.1e-11  Score=125.08  Aligned_cols=71  Identities=14%  Similarity=0.188  Sum_probs=59.6

Q ss_pred             ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEecCCCCCCCCccChhhhHHH
Q 029679           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus        96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~~~~~l~~~~ltv~enl~~  175 (189)
                      +|+|+||+|++|++++|+|+||||||||+++|+|+++   +.+|.+...+     ...|++|+ ..++.  .|+++|+.+
T Consensus       441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g-----~iayv~Q~-~~l~~--~Ti~eNI~~  509 (1490)
T TIGR01271       441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSG-----RISFSPQT-SWIMP--GTIKDNIIF  509 (1490)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECC-----EEEEEeCC-CccCC--ccHHHHHHh
Confidence            5789999999999999999999999999999999998   8999975433     36677876 34444  599999987


Q ss_pred             HH
Q 029679          176 AH  177 (189)
Q Consensus       176 ~~  177 (189)
                      +.
T Consensus       510 g~  511 (1490)
T TIGR01271       510 GL  511 (1490)
T ss_pred             cc
Confidence            53

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.20  E-value=1.9e-11  Score=91.97  Aligned_cols=68  Identities=16%  Similarity=0.039  Sum_probs=48.3

Q ss_pred             cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec-cCC-------CCCCCeEEEEecCCCCCCCCc
Q 029679           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQ-------VKPPDVATVLPMDGFHLYLSQ  166 (189)
Q Consensus        95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~-~~~-------~~~~~~~~vv~~~~~~l~~~~  166 (189)
                      .+|++++|++.+|++++|+|+||||||||++++.   .      |.+. .+.       ....+...+.+|+   .+.  
T Consensus         3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~---~------G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~--   68 (107)
T cd00820           3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI---K------RKHRLVGDDNVEIREDSKDELIGRNPEL---GLE--   68 (107)
T ss_pred             eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh---C------CeEEEeeEeHHHhhhhhcCCEEEEechh---cch--
Confidence            4688999999999999999999999999999986   1      2221 111       1123445555544   332  


Q ss_pred             cChhhhHHHH
Q 029679          167 LDAMEDPKEA  176 (189)
Q Consensus       167 ltv~enl~~~  176 (189)
                      .++++|+.++
T Consensus        69 ~ti~~Ni~~~   78 (107)
T cd00820          69 IRLRLNIFLI   78 (107)
T ss_pred             hhHHhhceee
Confidence            5799998874

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.17  E-value=2.5e-11  Score=98.41  Aligned_cols=36  Identities=28%  Similarity=0.379  Sum_probs=33.0

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHH
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~G  129 (189)
                      +.+++|+||++++|++++|+|+||||||||+|+|.+
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            456889999999999999999999999999999853

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.17  E-value=4.9e-11  Score=120.41  Aligned_cols=89  Identities=20%  Similarity=0.275  Sum_probs=70.1

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      -|+++|++.+|.....  .+|+||||+|++||.+||||..|||||||+.+|-++..   +.+|.|...+.+        .
T Consensus      1138 ~I~f~~~~~RYrp~lp--~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLP--LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred             eEEEEEeEEEeCCCCc--chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeecccccHHHH
Confidence            5999999999976422  46789999999999999999999999999999999998   899997554433        3


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDP  173 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl  173 (189)
                      |....++||+.. +|.  -|++.|+
T Consensus      1213 RsrlsIIPQdPv-LFs--GTvR~NL 1234 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPV-LFS--GTVRFNL 1234 (1381)
T ss_pred             HhcCeeeCCCCc-eec--Ccccccc
Confidence            456788998843 332  2455443

>PRK13409 putative ATPase RIL; Provisional

Probab=99.14  E-value=3e-11  Score=113.97  Aligned_cols=54  Identities=19%  Similarity=0.181  Sum_probs=47.5

Q ss_pred             eeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec
Q 029679           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF  142 (189)
Q Consensus        82 ~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~  142 (189)
                      +++++|+..   .++|++++ .+++|+++||+|+||||||||+|+|+|+++   |+.|++.
T Consensus        78 ~~~~~yg~~---~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~  131 (590)
T PRK13409         78 EPVHRYGVN---GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYE  131 (590)
T ss_pred             CceEEecCC---ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcccc
Confidence            388899752   24688999 899999999999999999999999999998   8999874

>PTZ00243 ABC transporter; Provisional

Probab=99.09  E-value=1.7e-10  Score=118.85  Aligned_cols=70  Identities=13%  Similarity=0.159  Sum_probs=58.7

Q ss_pred             ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEecCCCCCCCCccChhhhHHH
Q 029679           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus        96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~~~~~l~~~~ltv~enl~~  175 (189)
                      +|+|+||+|++|++++|+|+||||||||+++|+|+++   +++|++...     ...+|++|+. .++.  .|+.+|+.+
T Consensus       675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~~-----~~i~yv~Q~~-~l~~--~Tv~enI~~  743 (1560)
T PTZ00243        675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWAE-----RSIAYVPQQA-WIMN--ATVRGNILF  743 (1560)
T ss_pred             eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEEC-----CeEEEEeCCC-ccCC--CcHHHHHHc
Confidence            5789999999999999999999999999999999998   899987532     3467788764 3443  699999987


Q ss_pred             H
Q 029679          176 A  176 (189)
Q Consensus       176 ~  176 (189)
                      .
T Consensus       744 ~  744 (1560)
T PTZ00243        744 F  744 (1560)
T ss_pred             C
Confidence            4

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=1.1e-10  Score=105.59  Aligned_cols=91  Identities=19%  Similarity=0.165  Sum_probs=70.4

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--------C
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--------~  148 (189)
                      .+.++++++.|... +  ..|+++||++++|++++|||+||+||||++|+|.+++.   +++|.+...+.+        .
T Consensus       262 ~v~F~~V~F~y~~~-r--~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~sl  335 (497)
T COG5265         262 AVAFINVSFAYDPR-R--PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQSL  335 (497)
T ss_pred             eEEEEEEEeecccc-c--hhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHHH
Confidence            47899999999763 2  24679999999999999999999999999999999999   999997443322        2


Q ss_pred             CCeEEEEecCCCCCCCCccChhhhHHHH
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~~~~vv~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++.++++||| .-+|.  -+.+.|+.++
T Consensus       336 R~aIg~VPQD-tvLFN--Dti~yni~yg  360 (497)
T COG5265         336 RRAIGIVPQD-TVLFN--DTIAYNIKYG  360 (497)
T ss_pred             HHHhCcCccc-ceehh--hhHHHHHhcc
Confidence            4567888987 33443  3566665543

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.04  E-value=5.8e-10  Score=112.80  Aligned_cols=92  Identities=14%  Similarity=0.172  Sum_probs=73.8

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEE
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT  153 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~  153 (189)
                      ....++++|.++.++.. .....|+||||+|++|+.+||||+-|||||+|+.+|+|-++   ..+|.+...+.     ..
T Consensus       515 ~~~~i~i~~~sfsW~~~-~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs-----ia  585 (1381)
T KOG0054|consen  515 GENAIEIKNGSFSWDSE-SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS-----VA  585 (1381)
T ss_pred             CCceEEEeeeeEecCCC-CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe-----EE
Confidence            44579999999998762 22236889999999999999999999999999999999998   78888754432     67


Q ss_pred             EEecCCCCCCCCccChhhhHHHHH
Q 029679          154 VLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       154 vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      |++|+.+ ++  ..|++||+.|+.
T Consensus       586 Yv~Q~pW-I~--ngTvreNILFG~  606 (1381)
T KOG0054|consen  586 YVPQQPW-IQ--NGTVRENILFGS  606 (1381)
T ss_pred             EeccccH-hh--CCcHHHhhhcCc
Confidence            7887633 33  368999999874

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.02  E-value=3.2e-10  Score=99.53  Aligned_cols=64  Identities=20%  Similarity=0.240  Sum_probs=48.3

Q ss_pred             EEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC------CCCeEEEEecCCCCCCCCccChhhhHHHHHHHc
Q 029679          112 LAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (189)
Q Consensus       112 ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~------~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~  180 (189)
                      |+|+||||||||+|+|+|+++   +++|++...+..      ..+..++++|+ +.+++ .+++.+|+.+++...
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~v~q~-~~l~~-~~tv~enl~~~~~~~   70 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINMVFQS-YALFP-HMTVEENVAFGLKMR   70 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEEEecC-ccccC-CCcHHHHHHHHHhhc
Confidence            689999999999999999998   999997443311      12345677765 55666 489999999876543

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.95  E-value=5.4e-10  Score=93.22  Aligned_cols=31  Identities=26%  Similarity=0.392  Sum_probs=29.2

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHH
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLA  124 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~  124 (189)
                      +.+|++|||+|++||+++|+|+||||||||+
T Consensus         8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270           8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             hhccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence            4678999999999999999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=98.95  E-value=2.8e-09  Score=100.49  Aligned_cols=62  Identities=15%  Similarity=-0.007  Sum_probs=54.0

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF  142 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~  142 (189)
                      ...|.++|++..-++..   .-|++.+|.+++|+-+-|.|+||||||||+|+|+||-+   ..+|++.
T Consensus       390 ~~~i~~~nl~l~~p~~~---~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP---~g~G~I~  451 (604)
T COG4178         390 DHGITLENLSLRTPDGQ---TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP---WGSGRIS  451 (604)
T ss_pred             cceeEEeeeeEECCCCC---eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCc---cCCCcee
Confidence            46799999999987743   34679999999999999999999999999999999998   6777753

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=98.90  E-value=4.2e-09  Score=98.44  Aligned_cols=96  Identities=14%  Similarity=0.067  Sum_probs=68.1

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEE
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT  153 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~  153 (189)
                      .+.+|++++|+..-+.. .. ..++|+||+|..|+.+-|.|+||||||+|+|+|+||.+   ..+|++............
T Consensus       430 ~Dn~i~~e~v~l~tPt~-g~-~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp---~~~G~l~k~~~~~~~~lf  504 (659)
T KOG0060|consen  430 ADNAIEFEEVSLSTPTN-GD-LLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP---STGGKLTKPTDGGPKDLF  504 (659)
T ss_pred             ccceEEeeeeeecCCCC-Cc-eeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc---cCCCeEEecccCCCCceE
Confidence            34689999999887663 22 23569999999999999999999999999999999997   677876433222223344


Q ss_pred             EEecCCCCCCCCccChhhhHHHHH
Q 029679          154 VLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       154 vv~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      ++||..+   .+.-|.++.+.++.
T Consensus       505 flPQrPY---mt~GTLRdQvIYP~  525 (659)
T KOG0060|consen  505 FLPQRPY---MTLGTLRDQVIYPL  525 (659)
T ss_pred             EecCCCC---ccccchhheeeccC
Confidence            5565422   22345666665553

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.90  E-value=1.5e-09  Score=91.55  Aligned_cols=58  Identities=21%  Similarity=0.366  Sum_probs=52.2

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      |+++.++|++..+......+.+||+||+++.+||+-|+||+||||||-++++|+|..+
T Consensus         1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~k   58 (330)
T COG4170           1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK   58 (330)
T ss_pred             CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccc
Confidence            5678999999998654456789999999999999999999999999999999999886

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.88  E-value=1.2e-09  Score=100.74  Aligned_cols=44  Identities=18%  Similarity=0.203  Sum_probs=37.8

Q ss_pred             cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCce-eecc
Q 029679           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFD  143 (189)
Q Consensus        95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G-~i~~  143 (189)
                      .+|++|||++++||+++|+|+||||||||+|  +|+..   +++| .+..
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sGg~I~l   64 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEGYEFFL   64 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCCCEEEE
Confidence            4688999999999999999999999999999  67776   6666 4543

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=98.85  E-value=4.9e-09  Score=85.95  Aligned_cols=33  Identities=18%  Similarity=0.351  Sum_probs=31.7

Q ss_pred             cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        99 ~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +++|++.+| +++|+|+||||||||+++|+|+++
T Consensus        15 ~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~   47 (197)
T cd03278          15 KTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG   47 (197)
T ss_pred             CeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc
Confidence            789999999 999999999999999999999985

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.82  E-value=2.9e-09  Score=98.88  Aligned_cols=64  Identities=25%  Similarity=0.326  Sum_probs=55.7

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD  143 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~  143 (189)
                      +.|++.+.|+++.|.+.  . ....+++|.|..++.+++|||||+|||||+|+|+|.+.   |..|.+..
T Consensus       386 p~pvi~~~nv~F~y~~~--~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~  449 (614)
T KOG0927|consen  386 PPPVIMVQNVSFGYSDN--P-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSR  449 (614)
T ss_pred             CCCeEEEeccccCCCCc--c-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---cccccccc
Confidence            46799999999999763  2 34569999999999999999999999999999999998   88887643

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.79  E-value=1.1e-08  Score=102.66  Aligned_cols=102  Identities=17%  Similarity=0.053  Sum_probs=72.4

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCC-----CCCCe
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV-----KPPDV  151 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~-----~~~~~  151 (189)
                      +..+.|+.+.......+...|+||+=-+++|-.+||+|+|||||||||++|+|-...= .-+|.+..++.     .-+++
T Consensus       787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~R~  865 (1391)
T KOG0065|consen  787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFARV  865 (1391)
T ss_pred             eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhccc
Confidence            4555555544422112334578999999999999999999999999999999975410 12355433332     13567


Q ss_pred             EEEEecCCCCCCCCccChhhhHHHHHHHcC
Q 029679          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (189)
Q Consensus       152 ~~vv~~~~~~l~~~~ltv~enl~~~~~~~g  181 (189)
                      .+|+.|++.|. + .+||+|-+.+.+.+|-
T Consensus       866 ~GYvqQ~DiH~-~-~~TVrESL~fSA~LRl  893 (1391)
T KOG0065|consen  866 SGYVEQQDIHS-P-ELTVRESLRFSAALRL  893 (1391)
T ss_pred             cceeecccccC-c-ccchHHHHHHHHHHcC
Confidence            89999887777 3 5999999999887763

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.78  E-value=1.5e-08  Score=81.97  Aligned_cols=77  Identities=17%  Similarity=0.163  Sum_probs=50.6

Q ss_pred             cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC-----CCCeEEEEecCCCCCCCCccChhhhH
Q 029679           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-----PPDVATVLPMDGFHLYLSQLDAMEDP  173 (189)
Q Consensus        99 ~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~-----~~~~~~vv~~~~~~l~~~~ltv~enl  173 (189)
                      -+.+.+++|+.++|+|++|||||||+++|+|+++   ++.+.+...+..     ......+..+..........+..+.+
T Consensus        17 ~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   93 (186)
T cd01130          17 YLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL   93 (186)
T ss_pred             HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence            4567789999999999999999999999999997   666665333211     12334444333222122236677766


Q ss_pred             HHHHH
Q 029679          174 KEAHA  178 (189)
Q Consensus       174 ~~~~~  178 (189)
                      ...++
T Consensus        94 ~~~lR   98 (186)
T cd01130          94 RSALR   98 (186)
T ss_pred             HHHhc
Confidence            66554

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=98.64  E-value=3.8e-08  Score=80.98  Aligned_cols=57  Identities=28%  Similarity=0.316  Sum_probs=46.8

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCC
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ  145 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~  145 (189)
                      ++++++|...-        .|-.+|.++..||++=+|||||||||||+-.++|+.    +.+|+|...+
T Consensus         3 l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G   59 (248)
T COG4138           3 LMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAG   59 (248)
T ss_pred             eeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECC
Confidence            57788876543        133789999999999999999999999999999999    6788874433

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=98.63  E-value=3.1e-08  Score=83.28  Aligned_cols=54  Identities=19%  Similarity=0.186  Sum_probs=46.9

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      +-.|++.++.+.|... .++..  |+|++++.|...-+||.||+|||||+|+|+|-.
T Consensus        11 ~~aievsgl~f~y~~~-dP~~~--Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKh   64 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVS-DPIFF--DFNLDLPAGSRCLLVGANGAGKTTLLKILSGKH   64 (291)
T ss_pred             cceEEEeccEEecccC-CceEE--EEeeccCCCceEEEEecCCCchhhhHHHhcCcc
Confidence            3469999999999764 34444  999999999999999999999999999999965

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.63  E-value=2.9e-08  Score=90.42  Aligned_cols=46  Identities=22%  Similarity=0.335  Sum_probs=40.5

Q ss_pred             ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc-----cCCCceee
Q 029679           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-----IWPQKASS  141 (189)
Q Consensus        96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~-----~~p~~G~i  141 (189)
                      .++||||.+++|++++|+|+||+||||++|+|+|....     +-|++|.+
T Consensus       398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v  448 (593)
T COG2401         398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV  448 (593)
T ss_pred             eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCce
Confidence            57899999999999999999999999999999998752     45677764

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.60  E-value=5.7e-08  Score=89.19  Aligned_cols=66  Identities=21%  Similarity=0.379  Sum_probs=56.5

Q ss_pred             CCCCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc
Q 029679           72 QREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD  143 (189)
Q Consensus        72 ~~~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~  143 (189)
                      ....|+|-+.+|++.|++. +.++.  +++|.|.--..++||||||.|||||+++|.|-+.   |+.|....
T Consensus       581 ~L~PPvLGlH~VtFgy~gq-kpLFk--kldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~RK  646 (807)
T KOG0066|consen  581 KLNPPVLGLHDVTFGYPGQ-KPLFK--KLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGELRK  646 (807)
T ss_pred             CCCCCeeecccccccCCCC-Cchhh--cccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchhhc
Confidence            3456899999999999764 44444  8999999999999999999999999999999998   88887543

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=98.59  E-value=9.1e-08  Score=89.18  Aligned_cols=72  Identities=15%  Similarity=0.102  Sum_probs=52.4

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEec
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~  157 (189)
                      |.++|+-..-+.. + + .+..++|+|.+|--+-|.||||||||+|.|+|.||.+   ...|.+...   ++....|+||
T Consensus       482 I~lenIpvItP~~-~-v-vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP---vy~g~L~~P---~~~~mFYIPQ  552 (728)
T KOG0064|consen  482 IILENIPVITPAG-D-V-LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP---VYNGLLSIP---RPNNIFYIPQ  552 (728)
T ss_pred             eEEecCceeccCc-c-e-eecceeEEecCCceEEEECCCCccHHHHHHHHhccCc---ccCCeeecC---CCcceEeccC
Confidence            6777776666553 2 2 3569999999999999999999999999999999997   444443221   2333555565


Q ss_pred             C
Q 029679          158 D  158 (189)
Q Consensus       158 ~  158 (189)
                      .
T Consensus       553 R  553 (728)
T KOG0064|consen  553 R  553 (728)
T ss_pred             C
Confidence            4

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.58  E-value=5.8e-08  Score=80.89  Aligned_cols=44  Identities=18%  Similarity=0.205  Sum_probs=32.5

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      |+++|.. .|++.    .++++++     |++++|+||||||||||+++|++++
T Consensus         4 i~~~nfk-sy~~~----~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l   47 (243)
T cd03272           4 VIIQGFK-SYKDQ----TVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVL   47 (243)
T ss_pred             EEEeCcc-CcccC----cccccCC-----CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            4555553 45431    2344655     7899999999999999999999775

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.57  E-value=5.8e-08  Score=80.55  Aligned_cols=44  Identities=16%  Similarity=0.293  Sum_probs=34.9

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      |+++|.. .|++.    .++++++|     ++++|+||||||||||+++|...+
T Consensus         6 l~l~nfk-~~~~~----~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~   49 (212)
T cd03274           6 LVLENFK-SYAGE----QVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVF   49 (212)
T ss_pred             EEEECcc-cCCCC----eeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHh
Confidence            6777776 66542    35668887     899999999999999999998543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.57  E-value=8.1e-08  Score=87.89  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=36.2

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +.+++++ |++.+|++++|+|+||+|||||+++|+|+.+
T Consensus       143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~  180 (434)
T PRK07196        143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ  180 (434)
T ss_pred             eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence            5688999 9999999999999999999999999999986

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.57  E-value=1.1e-07  Score=87.21  Aligned_cols=59  Identities=17%  Similarity=0.168  Sum_probs=50.1

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i  141 (189)
                      +.++.+++++.|..+   +.+++.++ ++.+|+.++|+|+||||||||+++|+++..   ++.|.+
T Consensus       138 ~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv  196 (450)
T PRK06002        138 PAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVI  196 (450)
T ss_pred             CCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeee
Confidence            468999999999653   34566774 999999999999999999999999999987   776665

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=98.55  E-value=4.6e-08  Score=80.64  Aligned_cols=47  Identities=19%  Similarity=0.293  Sum_probs=36.6

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEec-CCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~-~Ge~~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      .|+++|+. .|...       .+|+|... +|++++|+|+||||||||+++|++.+
T Consensus         5 ~i~l~nf~-~y~~~-------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l   52 (213)
T cd03279           5 KLELKNFG-PFREE-------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYAL   52 (213)
T ss_pred             EEEEECCc-CcCCc-------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeE
Confidence            47888887 55431       25667644 58999999999999999999999654

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.54  E-value=8.4e-08  Score=78.91  Aligned_cols=33  Identities=18%  Similarity=0.234  Sum_probs=28.1

Q ss_pred             cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus        97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      ++|++|+  .|++++|+||||||||||+|+|+|..
T Consensus        17 ~n~i~l~--~g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          17 ANDIDME--KKNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             cceEEEc--CCcEEEEECCCCCChHHHHHHHHHHH
Confidence            3455555  47999999999999999999999977

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=98.54  E-value=7.1e-08  Score=89.33  Aligned_cols=50  Identities=22%  Similarity=0.270  Sum_probs=44.3

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHH
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~G  129 (189)
                      .-|.+.+++..|++  +.  .|.+-++++..|..+||||+||+|||||||+|+.
T Consensus        79 ~Di~~~~fdLa~G~--k~--LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   79 KDIHIDNFDLAYGG--KI--LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             cceeeeeeeeeecc--hh--hhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence            35888999999987  33  3559999999999999999999999999999998

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.51  E-value=1.3e-07  Score=88.15  Aligned_cols=54  Identities=22%  Similarity=0.308  Sum_probs=47.8

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcc
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK  133 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~  133 (189)
                      .-+.++++++.|.+.    ..+.|+.|.+.+|+.+||+|+|||||||++++|+|-..|
T Consensus        74 ~dvk~~sls~s~~g~----~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P  127 (614)
T KOG0927|consen   74 RDVKIESLSLSFHGV----ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVP  127 (614)
T ss_pred             ccceeeeeeeccCCc----eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCC
Confidence            359999999999762    345699999999999999999999999999999998873

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.48  E-value=5.4e-07  Score=83.04  Aligned_cols=99  Identities=19%  Similarity=0.177  Sum_probs=75.6

Q ss_pred             CCCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCC----
Q 029679           73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----  148 (189)
Q Consensus        73 ~~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~----  148 (189)
                      +..++|++++++..-..   .+.+|++|||+|++|||+||.|-+|-|-+.|+.+|+|+.+   +.+|++...+...    
T Consensus       253 pg~~vL~V~~L~v~~~~---~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~~~~  326 (501)
T COG3845         253 PGEVVLEVEDLSVKDRR---GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRL  326 (501)
T ss_pred             CCCeEEEEeeeEeecCC---CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEeccccC
Confidence            45789999999977533   2467889999999999999999999999999999999997   6778874443221    


Q ss_pred             ------CCeEEEEecCCC--CCCCCccChhhhHHHHHH
Q 029679          149 ------PDVATVLPMDGF--HLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       149 ------~~~~~vv~~~~~--~l~~~~ltv~enl~~~~~  178 (189)
                            ..-..++|.+.+  .+.+ .+++.+|+.+...
T Consensus       327 ~~~~~r~~G~~~VPedR~~~Glv~-~~sl~eN~vL~~~  363 (501)
T COG3845         327 SPRERRRLGLAYVPEDRHGHGLVL-DLSLAENLVLGRH  363 (501)
T ss_pred             CHHHHHhcCCccCChhhccCcccc-CccHHHHhhhhhc
Confidence                  123467787643  2344 4899999988654

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=98.44  E-value=1.2e-07  Score=80.72  Aligned_cols=79  Identities=41%  Similarity=0.609  Sum_probs=62.3

Q ss_pred             ecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCC
Q 029679          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGE  183 (189)
Q Consensus       104 i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~  183 (189)
                      -...+.+|++|+.|+||||++.++..-.+    ....-+..  ....++.++|+++||+....++.++|+..+++++|.+
T Consensus       116 ~n~~~l~glag~pGtgkst~~a~v~~aWp----~~~~~f~~--e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGap  189 (323)
T KOG2702|consen  116 SNNEELTGLAGRPGTGKSTRIAAVDNAWP----VNVNKFAQ--ESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAP  189 (323)
T ss_pred             ccchheeeeecCCCCcchhHHHHHHhhcc----hhhhhhhh--hhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCC
Confidence            34468899999999999999999988653    22111111  1234677799999999988899999999999999999


Q ss_pred             CCCCC
Q 029679          184 VPTLG  188 (189)
Q Consensus       184 ~~~~~  188 (189)
                      |+|+.
T Consensus       190 wTFD~  194 (323)
T KOG2702|consen  190 WTFDS  194 (323)
T ss_pred             cccCH
Confidence            99984

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.41  E-value=2.7e-07  Score=75.37  Aligned_cols=33  Identities=21%  Similarity=0.270  Sum_probs=29.7

Q ss_pred             cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus        99 ~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      ..++++.+|++++|+|+||||||||+|+|++..
T Consensus        21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~   53 (202)
T cd03243          21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAV   53 (202)
T ss_pred             eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHH
Confidence            568888899999999999999999999999554

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR00235 udk uridine kinase

Probab=98.41  E-value=2.1e-07  Score=76.33  Aligned_cols=28  Identities=29%  Similarity=0.595  Sum_probs=26.6

Q ss_pred             cCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      ++|++++|+|+||||||||++.|+++++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5799999999999999999999999986

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR00767 rho transcription termination factor Rho

Probab=98.38  E-value=6.2e-07  Score=81.46  Aligned_cols=53  Identities=21%  Similarity=0.262  Sum_probs=46.6

Q ss_pred             eEEEeeeEEEcCccceeecccc-----------cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           77 VVEARCMDEVYDALAQRLLPTS-----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~-----------~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      .+.++||+..|+...   ..|+           |+++.|.+|+.++|+|++|+|||||++.|+..+.
T Consensus       130 ri~Fe~LTf~YP~er---~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       130 RVLFENLTPLYPNER---LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             CeEEEEeeecCCCcc---ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence            599999999997631   2453           9999999999999999999999999999999875

Members of this family differ in the specificity of RNA binding.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.37  E-value=3.8e-07  Score=75.42  Aligned_cols=36  Identities=17%  Similarity=0.156  Sum_probs=33.4

Q ss_pred             ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus        96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      ..+|++|++..|++++|+|+||+||||++|+|+++.
T Consensus        18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~   53 (204)
T cd03282          18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA   53 (204)
T ss_pred             EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            356999999999999999999999999999999876

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.36  E-value=3.7e-07  Score=74.59  Aligned_cols=30  Identities=17%  Similarity=0.343  Sum_probs=28.6

Q ss_pred             cceeEecCCc-EEEEEcCCCCcHhHHHHHHH
Q 029679           99 ALASNVNVKH-IVGLAGPPGAGKSTLAAEVV  128 (189)
Q Consensus        99 ~vsl~i~~Ge-~~~ivG~sGsGKSTL~r~l~  128 (189)
                      ++||++.+|+ +++|+|+||||||||+|+|+
T Consensus        19 ~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          19 PLDIQLGENKRVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             cceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence            8899999995 89999999999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.33  E-value=4.5e-07  Score=77.92  Aligned_cols=33  Identities=18%  Similarity=0.349  Sum_probs=30.8

Q ss_pred             cccccceeEecCCcEEEEEcCCCCcHhHHHHHH
Q 029679           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEV  127 (189)
Q Consensus        95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l  127 (189)
                      ..|+|||++|+.|.+++|.|.||||||||++.+
T Consensus         9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~   41 (261)
T cd03271           9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDT   41 (261)
T ss_pred             hcCCCceeeccCCcEEEEECCCCCchHHHHHHH
Confidence            467899999999999999999999999999966

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.33  E-value=5.2e-07  Score=82.99  Aligned_cols=58  Identities=22%  Similarity=0.406  Sum_probs=45.5

Q ss_pred             CCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCcee
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (189)
Q Consensus        75 ~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~  140 (189)
                      ..++++.++.|.|+++.     |+==.=+|..||+++++||||-|||||.++|+|.++   |++|.
T Consensus       340 ~~lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~  397 (591)
T COG1245         340 DTLVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGS  397 (591)
T ss_pred             ceeeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCC
Confidence            34677778888887642     111234577789999999999999999999999999   88886

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.32  E-value=9.3e-07  Score=60.38  Aligned_cols=34  Identities=24%  Similarity=0.388  Sum_probs=28.9

Q ss_pred             cceeEecC-CcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           99 ALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        99 ~vsl~i~~-Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +.++++.+ |.++.|.|+||||||||+.+|.=++-
T Consensus        14 ~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   14 GETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             CeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence            45667765 56999999999999999999988874

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.32  E-value=5e-07  Score=72.93  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=25.9

Q ss_pred             CCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +|++++|+|+||||||||+++|++++.
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~   28 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFS   28 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            599999999999999999999999997

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.31  E-value=1e-06  Score=81.83  Aligned_cols=91  Identities=22%  Similarity=0.228  Sum_probs=68.6

Q ss_pred             CCCeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCC--C---
Q 029679           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P---  148 (189)
Q Consensus        74 ~~~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~--~---  148 (189)
                      ..+++++++++..-        .++||||++++|||+||.|--|+|+|-|+++|.|+.+   +.+|++...+..  .   
T Consensus       260 ~~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~sp  328 (500)
T COG1129         260 GEPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSP  328 (500)
T ss_pred             CCcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCCCH
Confidence            56789999987442        2459999999999999999999999999999999887   778887544321  1   


Q ss_pred             ----CCeEEEEecCCC--CCCCCccChhhhHHHH
Q 029679          149 ----PDVATVLPMDGF--HLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ----~~~~~vv~~~~~--~l~~~~ltv~enl~~~  176 (189)
                          ..-..|+|.|.-  .++. .+++.+|+.++
T Consensus       329 ~~Ai~~Gi~~v~EDRk~~Gl~l-~~sI~~Ni~l~  361 (500)
T COG1129         329 RDAIKAGIAYVPEDRKSEGLVL-DMSIAENITLA  361 (500)
T ss_pred             HHHHHcCCEeCCcccccCcCcC-CCcHHHheehH
Confidence                113466666532  3444 48999999887

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.30  E-value=9.8e-07  Score=74.36  Aligned_cols=44  Identities=20%  Similarity=0.308  Sum_probs=32.3

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      |+++|. +.|.+.         .+|...++ +++|+|+||||||||+.+|++++.
T Consensus         4 i~l~nf-~~~~~~---------~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~   47 (247)
T cd03275           4 LELENF-KSYKGR---------HVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLG   47 (247)
T ss_pred             EEEECc-cccCCC---------eeecCCCC-eEEEECCCCCCHHHHHHHHHHHhC
Confidence            667776 455431         12333334 999999999999999999999996

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.29  E-value=6.4e-07  Score=72.64  Aligned_cols=28  Identities=39%  Similarity=0.582  Sum_probs=26.3

Q ss_pred             cCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      ++|++++|+|+||||||||+++|+++++
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            5799999999999999999999999875

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.28  E-value=5.8e-07  Score=72.50  Aligned_cols=26  Identities=35%  Similarity=0.616  Sum_probs=24.6

Q ss_pred             CcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      |++++|+|+||||||||+|+|+++..
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~   27 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQ   27 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC
Confidence            78999999999999999999999875

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.26  E-value=2.2e-06  Score=70.12  Aligned_cols=28  Identities=32%  Similarity=0.635  Sum_probs=25.6

Q ss_pred             cCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      .++.+++|+|+||||||||++.|++.+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~   31 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG   31 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4678999999999999999999999884

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=98.26  E-value=1.2e-06  Score=73.14  Aligned_cols=24  Identities=38%  Similarity=0.542  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      ++||.|+||||||||++.|++++.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~   24 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLS   24 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHh
Confidence            589999999999999999999996

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.24  E-value=1.1e-06  Score=77.86  Aligned_cols=43  Identities=23%  Similarity=0.298  Sum_probs=38.0

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCcee
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~  140 (189)
                      +.+++++ |.+.+|++++|+|+||+|||||+++|+|+..   ++.+.
T Consensus        57 i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~v   99 (326)
T cd01136          57 VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNV   99 (326)
T ss_pred             cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEE
Confidence            4567788 9999999999999999999999999999987   55544

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.23  E-value=2.4e-06  Score=79.31  Aligned_cols=73  Identities=19%  Similarity=0.266  Sum_probs=52.1

Q ss_pred             cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEecCCCCCCCCccChhhhHH
Q 029679           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (189)
Q Consensus        95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~~~~~l~~~~ltv~enl~  174 (189)
                      ..+++.++.+.+|.+++|||+||+||||++..|++.+.   ...|.         ....++..|.+     ...+++++.
T Consensus       244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G~---------~kV~LI~~Dt~-----RigA~EQLr  306 (484)
T PRK06995        244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHGA---------SKVALLTTDSY-----RIGGHEQLR  306 (484)
T ss_pred             hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcCC---------CeEEEEeCCcc-----chhHHHHHH
Confidence            34567778888999999999999999999999999884   33221         12345555532     256788888


Q ss_pred             HHHHHcCCCC
Q 029679          175 EAHARRGGEV  184 (189)
Q Consensus       175 ~~~~~~g~~~  184 (189)
                      +.....+.+.
T Consensus       307 ~~AeilGVpv  316 (484)
T PRK06995        307 IYGKILGVPV  316 (484)
T ss_pred             HHHHHhCCCe
Confidence            7777666543

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.23  E-value=8.8e-07  Score=81.12  Aligned_cols=58  Identities=17%  Similarity=0.214  Sum_probs=47.7

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i  141 (189)
                      .++.+.++..|..+   +.+++++ |++.+|+.++|+|+||+|||||+++|+++..   ++.+.+
T Consensus       129 ~~~r~~v~~~l~tG---i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~vi  186 (433)
T PRK07594        129 AMVRQPITQPLMTG---IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNVL  186 (433)
T ss_pred             ceeccCHhheeCCC---ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEEE
Confidence            46667777777432   4577888 9999999999999999999999999999987   666654

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=98.21  E-value=1.1e-06  Score=73.95  Aligned_cols=26  Identities=19%  Similarity=0.377  Sum_probs=24.3

Q ss_pred             CcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      ..+++|||+||||||||+++|++++.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~   50 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLG   50 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            55999999999999999999999986

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.20  E-value=1.4e-06  Score=80.01  Aligned_cols=44  Identities=25%  Similarity=0.308  Sum_probs=39.6

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i  141 (189)
                      +.+++++ |.+.+|++++|+|+||+|||||+++|+|+..   ++.|.+
T Consensus       146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gvI  189 (438)
T PRK07721        146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNVI  189 (438)
T ss_pred             hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeEEE
Confidence            4567899 9999999999999999999999999999997   676765

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=98.20  E-value=1.5e-06  Score=71.58  Aligned_cols=28  Identities=21%  Similarity=0.289  Sum_probs=24.1

Q ss_pred             ceeEecCCcEEEEEcCCCCcHhHHHHHHH
Q 029679          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (189)
Q Consensus       100 vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~  128 (189)
                      .++++.+| +++|+|+||||||||+++|.
T Consensus        16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~   43 (204)
T cd03240          16 SEIEFFSP-LTLIVGQNGAGKTTIIEALK   43 (204)
T ss_pred             eEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            34556667 99999999999999999996

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK08149 ATP synthase SpaL; Validated

Probab=98.19  E-value=1.7e-06  Score=79.14  Aligned_cols=38  Identities=18%  Similarity=0.352  Sum_probs=35.6

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +.+++++ |++.+|++++|+|+||+|||||+++|+++..
T Consensus       139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~  176 (428)
T PRK08149        139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE  176 (428)
T ss_pred             cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC
Confidence            4578899 9999999999999999999999999999886

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.15  E-value=1.8e-06  Score=72.01  Aligned_cols=34  Identities=44%  Similarity=0.632  Sum_probs=29.6

Q ss_pred             ecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCcee
Q 029679          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (189)
Q Consensus       104 i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~  140 (189)
                      -.+..++||+|+||||||||++.|+++++   +++|.
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g~   63 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGEL   63 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhh---hccCC
Confidence            34568999999999999999999999998   66665

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.14  E-value=4.7e-06  Score=84.26  Aligned_cols=89  Identities=16%  Similarity=0.272  Sum_probs=66.8

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee-ccCCC----CCCCeEEEEecCCCCCCCCccC
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV----KPPDVATVLPMDGFHLYLSQLD  168 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i-~~~~~----~~~~~~~vv~~~~~~l~~~~lt  168 (189)
                      +..++|++.-+++|+++-++|+.|||||||+++|+|-+.......|++ +++..    ..++...|+.|++.|.-  .||
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p--~lT  205 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFP--ELT  205 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccc--eeE
Confidence            456889999999999999999999999999999999887544444554 22211    13455667777655543  599


Q ss_pred             hhhhHHHHHHHcCCCC
Q 029679          169 AMEDPKEAHARRGGEV  184 (189)
Q Consensus       169 v~enl~~~~~~~g~~~  184 (189)
                      |+|-+.|+++-++...
T Consensus       206 VreTldFa~rck~~~~  221 (1391)
T KOG0065|consen  206 VRETLDFAARCKGPGS  221 (1391)
T ss_pred             EeehhhHHHhccCCcc
Confidence            9999999987765533

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.14  E-value=2e-06  Score=68.36  Aligned_cols=26  Identities=35%  Similarity=0.567  Sum_probs=24.1

Q ss_pred             CcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      |++++|+|+||||||||++.|++++.
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            57899999999999999999999875

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.13  E-value=5.1e-06  Score=72.55  Aligned_cols=39  Identities=21%  Similarity=0.332  Sum_probs=34.2

Q ss_pred             ceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus       100 vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i  141 (189)
                      +++.++.|+.++|+|++|||||||+++|+++++   +..+.+
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~---~~~~iv  175 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP---KDERII  175 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC---ccccEE
Confidence            567888999999999999999999999999997   555543

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.12  E-value=3.2e-06  Score=83.77  Aligned_cols=43  Identities=19%  Similarity=0.293  Sum_probs=37.0

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHH
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEV  127 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l  127 (189)
                      ++|++++++.         ..|+|+||+|++|++++|+|.||||||||++-+
T Consensus       611 ~~l~l~~~~~---------~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~  653 (924)
T TIGR00630       611 KFLTLKGARE---------NNLKNITVSIPLGLFTCITGVSGSGKSTLINDT  653 (924)
T ss_pred             ceEEEEeCcc---------CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHH
Confidence            4789998862         146799999999999999999999999999843

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.12  E-value=2.9e-06  Score=71.20  Aligned_cols=43  Identities=19%  Similarity=0.092  Sum_probs=35.9

Q ss_pred             cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus        97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i  141 (189)
                      ..|++|.+.+|++++|.|+||+||||++|+|++..-  .++.|..
T Consensus        21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~--la~~G~~   63 (222)
T cd03287          21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITI--MAQIGSF   63 (222)
T ss_pred             EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHH--HHhCCCE
Confidence            459999999999999999999999999999999441  2555543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.10  E-value=2.4e-06  Score=67.81  Aligned_cols=26  Identities=31%  Similarity=0.548  Sum_probs=24.4

Q ss_pred             CcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      |++++|+|+||||||||++.|++.++
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            78999999999999999999999875

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.09  E-value=2.8e-06  Score=70.74  Aligned_cols=34  Identities=26%  Similarity=0.269  Sum_probs=30.7

Q ss_pred             cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus        97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      .+|++|+..+ ++++|+|+||+||||++|+|+++.
T Consensus        21 ~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~   54 (216)
T cd03284          21 PNDTELDPER-QILLITGPNMAGKSTYLRQVALIA   54 (216)
T ss_pred             eeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence            4589999887 999999999999999999998765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.08  E-value=3.4e-06  Score=78.65  Aligned_cols=49  Identities=24%  Similarity=0.337  Sum_probs=42.6

Q ss_pred             EeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        80 ~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +.|+++.|+..    .+++++++.+..|+.+.|+|+||||||||++.|.|+++
T Consensus       187 ~~d~~~v~Gq~----~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp  235 (506)
T PRK09862        187 QHDLSDVIGQE----QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP  235 (506)
T ss_pred             ccCeEEEECcH----HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC
Confidence            35788777652    35668999999999999999999999999999999998

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.07  E-value=3.2e-06  Score=77.28  Aligned_cols=44  Identities=20%  Similarity=0.261  Sum_probs=39.1

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i  141 (189)
                      +.+++++ |.+.+|+.++|+|+||+|||||+++|+++..   ++.+.+
T Consensus       133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~vi  176 (422)
T TIGR02546       133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS---ADVNVI  176 (422)
T ss_pred             ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC---CCEEEE
Confidence            4578899 9999999999999999999999999999987   666554

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.07  E-value=4.1e-06  Score=76.96  Aligned_cols=44  Identities=23%  Similarity=0.276  Sum_probs=39.1

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i  141 (189)
                      +.+++++ |.+.+|++++|+|+||+|||||+++|+++..   ++.+.+
T Consensus       151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~d~~vi  194 (441)
T PRK09099        151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ---CDVNVI  194 (441)
T ss_pred             ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEE
Confidence            4578899 9999999999999999999999999999987   665554

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.07  E-value=3.3e-06  Score=77.57  Aligned_cols=43  Identities=23%  Similarity=0.322  Sum_probs=37.7

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCcee
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~  140 (189)
                      +.+++++ |.+.+|+.++|+|+||+|||||+++|+++..   ++.+.
T Consensus       151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~v  193 (440)
T TIGR01026       151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE---ADVNV  193 (440)
T ss_pred             eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCEEE
Confidence            4567788 9999999999999999999999999999987   55443

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=98.06  E-value=3.8e-06  Score=77.33  Aligned_cols=38  Identities=26%  Similarity=0.319  Sum_probs=35.6

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +.++|++ |.+.+|+.++|+|+||+|||||+++|+|+..
T Consensus       156 i~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~  193 (451)
T PRK05688        156 IRSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE  193 (451)
T ss_pred             eeeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5678888 9999999999999999999999999999876

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.05  E-value=2.9e-06  Score=68.72  Aligned_cols=24  Identities=42%  Similarity=0.901  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      ++||+|+||||||||+++|.+++.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~   24 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG   24 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999999973

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.04  E-value=4e-06  Score=72.38  Aligned_cols=31  Identities=29%  Similarity=0.517  Sum_probs=26.5

Q ss_pred             EEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF  142 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~  142 (189)
                      ++||+|+||||||||+++|+++++   +.++.++
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~---~~~~~vi   31 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFG---SDLVTVI   31 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhC---CCceEEE
Confidence            589999999999999999999997   5556543

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=98.04  E-value=3.8e-06  Score=77.13  Aligned_cols=38  Identities=26%  Similarity=0.335  Sum_probs=33.8

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +.+++.+ |.+.+|++++|+|+||+|||||+++|++...
T Consensus       150 i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~  187 (444)
T PRK08972        150 VRAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT  187 (444)
T ss_pred             ceeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence            4556555 9999999999999999999999999999875

>PLN02796 D-glycerate 3-kinase

Probab=98.02  E-value=2e-06  Score=76.74  Aligned_cols=38  Identities=26%  Similarity=0.399  Sum_probs=32.8

Q ss_pred             cccccceeEe---cCCcE-----EEEEcCCCCcHhHHHHHHHHhhc
Q 029679           95 LPTSALASNV---NVKHI-----VGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        95 ~~l~~vsl~i---~~Ge~-----~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      ..++++++.+   ++|+.     +||+|+||||||||++.|.+++.
T Consensus        80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~  125 (347)
T PLN02796         80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN  125 (347)
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence            3566888887   56776     99999999999999999999996

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=98.01  E-value=6.1e-06  Score=75.26  Aligned_cols=44  Identities=23%  Similarity=0.303  Sum_probs=38.5

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i  141 (189)
                      +.+++++ |.+.+|++++|+|+||+|||||+++|+++..   ++.+.+
T Consensus       125 i~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~---~~~gvi  168 (413)
T TIGR03497       125 IKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAK---ADINVI  168 (413)
T ss_pred             ceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEEE
Confidence            4567888 9999999999999999999999999999887   555553

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK05922 type III secretion system ATPase; Validated

Probab=98.00  E-value=7.1e-06  Score=75.25  Aligned_cols=44  Identities=18%  Similarity=0.292  Sum_probs=36.8

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i  141 (189)
                      +.++|. -+.+.+|+.++|+|+||+|||||+++|++..+   ++.+.+
T Consensus       145 Ir~ID~-ll~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~---~d~gvi  188 (434)
T PRK05922        145 IKAIDA-FLTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK---STINVI  188 (434)
T ss_pred             ceeecc-eEEEcCCcEEEEECCCCCChHHHHHHHhccCC---CCceEE
Confidence            445555 59999999999999999999999999999886   555543

>PRK06315 type III secretion system ATPase; Provisional

Probab=97.99  E-value=3.9e-06  Score=77.14  Aligned_cols=38  Identities=21%  Similarity=0.318  Sum_probs=35.4

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +.++|++ |++.+|+.++|+|+||+|||||+++|+|+.+
T Consensus       152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~  189 (442)
T PRK06315        152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAE  189 (442)
T ss_pred             EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccc
Confidence            5678787 9999999999999999999999999999884

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=97.99  E-value=7e-06  Score=65.01  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=28.1

Q ss_pred             ccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        98 ~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +++++++.+| +.+|+|+||+||||++.+|.-++.
T Consensus        11 ~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~   44 (202)
T PF13476_consen   11 KDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG   44 (202)
T ss_dssp             EEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence            4667777776 889999999999999999998885

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=97.98  E-value=9.2e-06  Score=74.47  Aligned_cols=58  Identities=16%  Similarity=0.299  Sum_probs=46.4

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i  141 (189)
                      .++-+.+++.|..+   +.++|+ .|.+.+|+.++|+|+||+|||||+++|++...   ++.+.+
T Consensus       130 ~~~r~~i~~~l~TG---iraID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~gvI  187 (432)
T PRK06793        130 AFEREEITDVFETG---IKSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK---ADINVI  187 (432)
T ss_pred             chheechhhccCCC---CEEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCC---CCeEEE
Confidence            45666777777533   345556 59999999999999999999999999999987   666654

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=97.98  E-value=7e-06  Score=68.65  Aligned_cols=34  Identities=18%  Similarity=0.209  Sum_probs=31.1

Q ss_pred             cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHh
Q 029679           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus        97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl  130 (189)
                      .+|+++++++++++.|.|+||+||||++|+|+-.
T Consensus        20 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~   53 (222)
T cd03285          20 PNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI   53 (222)
T ss_pred             EeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH
Confidence            4699999999999999999999999999998743

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=97.98  E-value=7.7e-06  Score=74.54  Aligned_cols=51  Identities=25%  Similarity=0.303  Sum_probs=40.6

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      ++-..++..|..+   +.+++.+ |.+.+|++++|+|+||+|||||+++|+++..
T Consensus       112 ~~R~~~~~~~~tG---i~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~  162 (411)
T TIGR03496       112 LKRAPIDEPLDVG---VRAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTE  162 (411)
T ss_pred             HhccCcceEeeee---EEeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3334455555432   4566677 9999999999999999999999999999887

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=97.98  E-value=6.7e-06  Score=75.40  Aligned_cols=38  Identities=24%  Similarity=0.308  Sum_probs=34.9

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +.+++++ +++.+|++++|+|+||+|||||+++|++...
T Consensus       145 i~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~  182 (434)
T PRK08472        145 VKSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCL  182 (434)
T ss_pred             hHHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence            3578899 9999999999999999999999999998775

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=97.97  E-value=6.4e-06  Score=75.22  Aligned_cols=43  Identities=19%  Similarity=0.163  Sum_probs=37.4

Q ss_pred             cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus        95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i  141 (189)
                      .++ |.+|.+.+|+.++|+|+||+|||||+++|+++..   ++.|.+
T Consensus       129 ~ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gvi  171 (418)
T TIGR03498       129 RVI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVVI  171 (418)
T ss_pred             EEE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEEE
Confidence            444 5799999999999999999999999999999987   666554

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PTZ00301 uridine kinase; Provisional

Probab=97.96  E-value=1.1e-05  Score=67.08  Aligned_cols=24  Identities=33%  Similarity=0.847  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCcHhHHHHHHHHhh
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       108 e~~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      -++||.|+||||||||++.|...+
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l   27 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSEL   27 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHH
Confidence            478999999999999999887655

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=97.96  E-value=7.1e-06  Score=81.53  Aligned_cols=44  Identities=20%  Similarity=0.314  Sum_probs=38.0

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHH
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~  128 (189)
                      +.|++++++.         ..|+|+||+|++||+++|+|.||||||||++.+.
T Consensus       613 ~~L~v~~l~~---------~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l  656 (943)
T PRK00349        613 KFLKLKGARE---------NNLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL  656 (943)
T ss_pred             ceEEecCCcc---------CCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence            4788888851         1367999999999999999999999999999874

>PRK06936 type III secretion system ATPase; Provisional

Probab=97.95  E-value=8.1e-06  Score=74.96  Aligned_cols=38  Identities=26%  Similarity=0.379  Sum_probs=35.5

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +.+++++ |++.+|+.++|+|+||+|||||+++|++...
T Consensus       150 i~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~  187 (439)
T PRK06936        150 VRVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAE  187 (439)
T ss_pred             cceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCC
Confidence            4578899 9999999999999999999999999999886

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=97.94  E-value=1.2e-05  Score=75.11  Aligned_cols=46  Identities=22%  Similarity=0.383  Sum_probs=36.8

Q ss_pred             cccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus        95 ~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i  141 (189)
                      .-+||+-+.+ ++.+++|.|+|||||||+++.|+..+.-.+.++|.+
T Consensus       273 RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~  318 (512)
T PRK13477        273 RLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAM  318 (512)
T ss_pred             EEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCce
Confidence            3467999988 889999999999999999999997664333555554

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.92  E-value=7.8e-06  Score=71.34  Aligned_cols=26  Identities=31%  Similarity=0.376  Sum_probs=24.3

Q ss_pred             CcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      -.++||.|+||||||||+++|.+++.
T Consensus        62 p~IIGIaG~~GSGKSTlar~L~~ll~   87 (290)
T TIGR00554        62 PYIISIAGSVAVGKSTTARILQALLS   87 (290)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            36899999999999999999999996

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.88  E-value=1e-05  Score=59.94  Aligned_cols=24  Identities=50%  Similarity=0.963  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +++|.|++||||||+++.|+..+.
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~   24 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG   24 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Confidence            589999999999999999999764

...

>PRK06820 type III secretion system ATPase; Validated

Probab=97.88  E-value=1.5e-05  Score=73.32  Aligned_cols=38  Identities=18%  Similarity=0.280  Sum_probs=35.3

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +.++|++ +++.+|+.++|+|+||+|||||+++|+++..
T Consensus       151 i~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~  188 (440)
T PRK06820        151 IRAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSA  188 (440)
T ss_pred             Cceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCC
Confidence            5678888 9999999999999999999999999999876

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=97.87  E-value=9e-06  Score=74.90  Aligned_cols=38  Identities=24%  Similarity=0.251  Sum_probs=33.7

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +.++ |.-|++.+|++++|+|+||+|||||+++|+|+..
T Consensus       163 iraI-D~ll~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~  200 (455)
T PRK07960        163 VRAI-NALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTQ  200 (455)
T ss_pred             ceee-eecccccCCcEEEEECCCCCCccHHHHHHhCCCC
Confidence            3455 4459999999999999999999999999999987

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.86  E-value=1.5e-05  Score=83.40  Aligned_cols=46  Identities=11%  Similarity=0.157  Sum_probs=36.6

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHH
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEV  127 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l  127 (189)
                      ++..++...+...    ..|+||||+|++|++++|+|+||||||||+..+
T Consensus       936 l~~~~i~i~~~~~----~~lk~isl~i~~gei~~itG~nGsGKStL~~~~  981 (1809)
T PRK00635        936 PVPADITIKNAYQ----HNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI  981 (1809)
T ss_pred             cccceEEEecccc----ccccceeEEecCCcEEEEECCCCCChhHHHHHH
Confidence            4455666665431    247799999999999999999999999988776

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.86  E-value=1.2e-05  Score=69.47  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=29.5

Q ss_pred             cEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeecc
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD  143 (189)
Q Consensus       108 e~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~  143 (189)
                      ..++|+|++|||||||+++|+|++.   ++.|++..
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~  144 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILS---TGISQLGL  144 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEE
Confidence            5789999999999999999999998   88888643

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.86  E-value=1.5e-05  Score=57.95  Aligned_cols=27  Identities=37%  Similarity=0.759  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      .+..+.|+|++|+||||+++.|+..+.
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccC
Confidence            367899999999999999999999986

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.86  E-value=1.5e-05  Score=63.27  Aligned_cols=28  Identities=29%  Similarity=0.444  Sum_probs=26.4

Q ss_pred             cCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      ++|++++|+|.+||||||+++.|++.+.
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~   29 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLR   29 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999999999985

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.85  E-value=1.9e-05  Score=64.79  Aligned_cols=34  Identities=18%  Similarity=0.303  Sum_probs=28.5

Q ss_pred             ccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        98 ~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +++++++.+| +.+|+|+||+|||||+.+|...+.
T Consensus        13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~   46 (198)
T cd03276          13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG   46 (198)
T ss_pred             eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc
Confidence            3677777777 778999999999999999986654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.84  E-value=1.2e-05  Score=84.10  Aligned_cols=41  Identities=17%  Similarity=0.239  Sum_probs=35.8

Q ss_pred             CeEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHH
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAA  125 (189)
Q Consensus        76 ~~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r  125 (189)
                      +.|++++++.         ..|+++||+|++||+++|.|+||||||||++
T Consensus       599 ~~L~l~~~~~---------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~  639 (1809)
T PRK00635        599 GTLTLSKATK---------HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN  639 (1809)
T ss_pred             CeEEEecccc---------CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence            4688888752         1467999999999999999999999999999

>PRK01889 GTPase RsgA; Reviewed

Probab=97.83  E-value=9.3e-06  Score=72.50  Aligned_cols=43  Identities=26%  Similarity=0.292  Sum_probs=36.9

Q ss_pred             cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec
Q 029679           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF  142 (189)
Q Consensus        97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~  142 (189)
                      ++.+.-.+.+|++++|+|+||+|||||+++|+|+..   +..|.+.
T Consensus       185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~---~~~G~i~  227 (356)
T PRK01889        185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEV---QKTGAVR  227 (356)
T ss_pred             HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcc---cceeeEE
Confidence            345566678899999999999999999999999998   7788764

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.81  E-value=1.9e-05  Score=64.30  Aligned_cols=28  Identities=25%  Similarity=0.420  Sum_probs=26.0

Q ss_pred             cCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      ++|++++|+|.||||||||++.|++++.
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~   49 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALH   49 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6789999999999999999999999874

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.77  E-value=1.3e-05  Score=63.61  Aligned_cols=22  Identities=36%  Similarity=0.640  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCcHhHHHHHHH
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVV  128 (189)
Q Consensus       107 Ge~~~ivG~sGsGKSTL~r~l~  128 (189)
                      ..+++|+|++||||||+++.|+
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~   24 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIV   24 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999999

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.76  E-value=2.3e-05  Score=70.64  Aligned_cols=38  Identities=26%  Similarity=0.377  Sum_probs=33.8

Q ss_pred             ecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus        94 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      +..++++++.+.+|++++|+|++|+||||++..|++.+
T Consensus       124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            44566788899999999999999999999999999865

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=97.76  E-value=4.1e-05  Score=76.92  Aligned_cols=47  Identities=17%  Similarity=0.372  Sum_probs=37.5

Q ss_pred             EEEeeeEEEcCccceeecccccceeE---ecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASN---VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~---i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      |.++|+....+..        .|+|+   +..+.+++|+|+|||||||++.+|+..+.
T Consensus         6 l~~~nf~s~~~~~--------~idf~~~~l~~~~l~~I~G~tGaGKStildai~~aLy   55 (1047)
T PRK10246          6 LRLKNLNSLKGEW--------KIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALY   55 (1047)
T ss_pred             EEeecceeEcCCc--------eEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            7778877554431        58888   45589999999999999999999997764

>PRK09183 transposase/IS protein; Provisional

Probab=97.76  E-value=2.1e-05  Score=67.22  Aligned_cols=52  Identities=21%  Similarity=0.266  Sum_probs=39.1

Q ss_pred             EEeeeEEEcCcc--ceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679           79 EARCMDEVYDAL--AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus        79 ~~~~l~~~~~~~--~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      .+++..+.|...  ...+..|.+++| +.+|+.+.|+|++|+|||+|+.+|+...
T Consensus        73 ~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a  126 (259)
T PRK09183         73 TFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEA  126 (259)
T ss_pred             cHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence            344555555322  123456778899 9999999999999999999999997664

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.75  E-value=2.6e-05  Score=68.79  Aligned_cols=35  Identities=17%  Similarity=0.288  Sum_probs=30.2

Q ss_pred             ecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus       104 i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i  141 (189)
                      -.+|++++|+|+||+||||++..|++++.   ..++++
T Consensus       111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g~~V  145 (318)
T PRK10416        111 EKKPFVILVVGVNGVGKTTTIGKLAHKYK---AQGKKV  145 (318)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCeE
Confidence            35789999999999999999999999996   555554

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.75  E-value=2.3e-05  Score=63.57  Aligned_cols=24  Identities=50%  Similarity=0.958  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      ++||.|+||||||||++.|..+++
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999999996

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=97.74  E-value=3e-05  Score=71.66  Aligned_cols=51  Identities=24%  Similarity=0.337  Sum_probs=43.1

Q ss_pred             eEEEeeeEEEcCccceeecccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus        77 ~l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      -|.++|.+.+-.+  +.++.  +.||.|-.|..+|||||||-|||||++-|+.--
T Consensus       264 DIKiEnF~ISA~G--k~LFv--nA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ra  314 (807)
T KOG0066|consen  264 DIKIENFDISAQG--KLLFV--NASLTIVYGRRYGLVGPNGMGKTTLLKHIAARA  314 (807)
T ss_pred             cceeeeeeeeccc--ceeee--ccceEEEecceecccCCCCCchHHHHHHHHhhh
Confidence            4888998887655  34454  899999999999999999999999999998643

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.73  E-value=2.6e-05  Score=71.33  Aligned_cols=28  Identities=32%  Similarity=0.579  Sum_probs=25.9

Q ss_pred             ecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       104 i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      +.+|++++|||+||+||||+++.|++..
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~  215 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAARA  215 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999999999964

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.73  E-value=5.1e-05  Score=63.73  Aligned_cols=29  Identities=17%  Similarity=0.252  Sum_probs=26.6

Q ss_pred             ecCCcEEEEEcCCCCcHhHH-HHHHHHhhc
Q 029679          104 VNVKHIVGLAGPPGAGKSTL-AAEVVRRIN  132 (189)
Q Consensus       104 i~~Ge~~~ivG~sGsGKSTL-~r~l~Gl~~  132 (189)
                      +++|+++.|+|++||||||| +++++++.+
T Consensus        21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~   50 (230)
T PRK08533         21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ   50 (230)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            78899999999999999999 699998875

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=97.73  E-value=4.2e-05  Score=60.45  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=28.6

Q ss_pred             cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        99 ~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      ..++.+..+.++.|+|+|||||||++++|...+-
T Consensus        13 ~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~   46 (162)
T cd03227          13 PNDVTFGEGSLTIITGPNGSGKSTILDAIGLALG   46 (162)
T ss_pred             ccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4566666677999999999999999999877764

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd00879 Sar1 Sar1 subfamily

Probab=97.73  E-value=2e-05  Score=62.64  Aligned_cols=33  Identities=27%  Similarity=0.189  Sum_probs=29.0

Q ss_pred             ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHH
Q 029679           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus        96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~G  129 (189)
                      +|+++++..+++++ +|+|++|||||||++.+.+
T Consensus         9 ~~~~~~~~~~~~ki-~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879           9 VLSSLGLYNKEAKI-LFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             HHHHhhcccCCCEE-EEECCCCCCHHHHHHHHhc
Confidence            36688888887766 8999999999999999987

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.71  E-value=2.9e-05  Score=67.54  Aligned_cols=37  Identities=32%  Similarity=0.479  Sum_probs=34.2

Q ss_pred             ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      .++++++...++.+++|+|++|||||||++.|++.+.
T Consensus        23 ~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~   59 (300)
T TIGR00750        23 LLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR   59 (300)
T ss_pred             HHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999874

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.70  E-value=3.9e-05  Score=59.85  Aligned_cols=30  Identities=30%  Similarity=0.493  Sum_probs=27.5

Q ss_pred             EecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       103 ~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      .+++|.+++|.|+.|||||||+|.|+..+.
T Consensus        18 ~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        18 PLDFGTVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             hCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            357899999999999999999999999875

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.70  E-value=4.5e-05  Score=63.35  Aligned_cols=30  Identities=23%  Similarity=0.356  Sum_probs=24.8

Q ss_pred             ceeEecCC--cEEEEEcCCCCcHhHHHHHHHH
Q 029679          100 LASNVNVK--HIVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus       100 vsl~i~~G--e~~~ivG~sGsGKSTL~r~l~G  129 (189)
                      .++.+.++  .++.|+|+||+|||||+|.|+.
T Consensus        20 nd~~l~~~~~~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          20 NDTEIGGGGPSIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             ceEEecCCCceEEEEECCCCCChHHHHHHHHH
Confidence            35555555  7899999999999999999984

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.69  E-value=3.4e-05  Score=62.01  Aligned_cols=27  Identities=26%  Similarity=0.356  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      ++++++++|+||+|||||++.|.+-..
T Consensus        34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~   60 (161)
T PF03193_consen   34 KGKTSVLLGQSGVGKSSLINALLPEAK   60 (161)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            358999999999999999999999754

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=97.69  E-value=4.6e-05  Score=63.82  Aligned_cols=35  Identities=29%  Similarity=0.361  Sum_probs=32.7

Q ss_pred             cccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus        97 l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      -+|++|++++|+++.|.|+||+||||++++|++..
T Consensus        20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~   54 (218)
T cd03286          20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV   54 (218)
T ss_pred             EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence            35999999999999999999999999999999975

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.69  E-value=3.1e-05  Score=75.37  Aligned_cols=37  Identities=24%  Similarity=0.351  Sum_probs=33.3

Q ss_pred             ccccceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        96 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      .++++++.+.+|+++++||+||+||||++..|++.+.
T Consensus       174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~  210 (767)
T PRK14723        174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV  210 (767)
T ss_pred             hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH
Confidence            4567888888899999999999999999999999874

>PRK08233 hypothetical protein; Provisional

Probab=97.68  E-value=3.9e-05  Score=60.52  Aligned_cols=27  Identities=26%  Similarity=0.543  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      ++.+++|.|++|||||||++.|+..+.
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence            357899999999999999999999874

>PRK07429 phosphoribulokinase; Provisional

Probab=97.68  E-value=4e-05  Score=67.89  Aligned_cols=25  Identities=28%  Similarity=0.569  Sum_probs=23.5

Q ss_pred             cEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 e~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      -++||.|+||||||||++.|+++++
T Consensus         9 ~IIgI~G~SGSGKSTla~~L~~ll~   33 (327)
T PRK07429          9 VLLGVAGDSGCGKTTFLRGLADLLG   33 (327)
T ss_pred             EEEEEECCCCCCHHHHHHHHHhHhc
Confidence            3789999999999999999999987

>PRK15494 era GTPase Era; Provisional

Probab=97.68  E-value=3.6e-05  Score=68.22  Aligned_cols=51  Identities=31%  Similarity=0.304  Sum_probs=43.1

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCc-------EEEEEcCCCCcHhHHHHHHHHhh
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKH-------IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge-------~~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      ++.+++++.|+.. .  .++..++|.++.|+       .++|+|.+|+|||||++.|.|-.
T Consensus        19 ~~~~~~~~~~~~~-~--~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k   76 (339)
T PRK15494         19 TEALAAAVREDAS-T--GSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK   76 (339)
T ss_pred             cccccccccCCCC-c--ccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence            6778888888742 2  25679999999999       99999999999999999998853

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.67  E-value=3e-05  Score=60.00  Aligned_cols=24  Identities=38%  Similarity=0.749  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +++|+|+||||||||++.|++.++
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCC
Confidence            368999999999999999999875

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.67  E-value=4.3e-05  Score=60.74  Aligned_cols=29  Identities=24%  Similarity=0.435  Sum_probs=26.4

Q ss_pred             ecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       104 i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      .++|.++.|+|.+||||||+++.|+..+.
T Consensus         4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          4 KPNGYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999998885

>PRK00098 GTPase RsgA; Reviewed

Probab=97.67  E-value=3.7e-05  Score=66.95  Aligned_cols=34  Identities=26%  Similarity=0.355  Sum_probs=29.4

Q ss_pred             CCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeec
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF  142 (189)
Q Consensus       106 ~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~  142 (189)
                      +|.+++|+|+||+|||||++.|+|...   ...|.+.
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~---~~~g~v~  196 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLE---LKTGEIS  196 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcC---CCCccee
Confidence            589999999999999999999999886   5566653

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=97.67  E-value=5.9e-05  Score=65.43  Aligned_cols=64  Identities=31%  Similarity=0.402  Sum_probs=46.2

Q ss_pred             cEEEEEcCCCCcHhHHHHHHHHhhcccCCCceeeccCCCCCCCeEEEEecCCCCCCCCccChhhhHHHHHHHcCCCCCCC
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEVPTL  187 (189)
Q Consensus       108 e~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i~~~~~~~~~~~~vv~~~~~~l~~~~ltv~enl~~~~~~~g~~~~~~  187 (189)
                      -++||.|+.|+||||+++.+.-++... +           ....+.++++|||+....++....    .+.++|.|++||
T Consensus        83 fIIgiaGsvavGKST~ar~L~~ll~~~-~-----------~~~~v~lvpmDGFhy~n~~L~~~g----lm~rKGfPeSyD  146 (283)
T COG1072          83 FIIGIAGSVAVGKSTTARILQALLSRW-P-----------ESPKVDLVTMDGFHYPNAVLDERG----LMARKGFPESYD  146 (283)
T ss_pred             EEEEeccCccccHHHHHHHHHHHHhhC-C-----------CCCceEEEeccccccCHhHhhhcc----ccccCCCCcccc
Confidence            478999999999999999999999621 1           112456789999987655444221    345678888876

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.66  E-value=3.7e-05  Score=66.55  Aligned_cols=39  Identities=23%  Similarity=0.329  Sum_probs=31.4

Q ss_pred             cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus        99 ~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i  141 (189)
                      .+...+. +++++++|+||+|||||++.|.|...   +..|.+
T Consensus       154 ~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~---~~~g~v  192 (287)
T cd01854         154 ELREYLK-GKTSVLVGQSGVGKSTLINALLPDLD---LATGEI  192 (287)
T ss_pred             HHHhhhc-cceEEEECCCCCCHHHHHHHHhchhh---ccccce
Confidence            3444454 58999999999999999999999987   556654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.66  E-value=4.5e-05  Score=61.10  Aligned_cols=32  Identities=31%  Similarity=0.465  Sum_probs=28.6

Q ss_pred             eeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       101 sl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +-..++|+++.|.|.+||||||+++.|.+.+.
T Consensus        12 ~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~   43 (184)
T TIGR00455        12 ALNGHRGVVIWLTGLSGSGKSTIANALEKKLE   43 (184)
T ss_pred             HHhCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34567899999999999999999999999984

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK07261 topology modulation protein; Provisional

Probab=97.65  E-value=4.3e-05  Score=61.22  Aligned_cols=24  Identities=38%  Similarity=0.592  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      .++|+|+||||||||++.|+..+.
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~   25 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYN   25 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999998764

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=97.65  E-value=1.7e-05  Score=63.13  Aligned_cols=20  Identities=40%  Similarity=0.722  Sum_probs=18.8

Q ss_pred             EcCCCCcHhHHHHHHHHhhc
Q 029679          113 AGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       113 vG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +|+||||||||+++|++.+.
T Consensus         1 ~G~sGsGKSTla~~la~~l~   20 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLH   20 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhC
Confidence            59999999999999999985

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=97.65  E-value=5.6e-05  Score=62.00  Aligned_cols=24  Identities=42%  Similarity=0.637  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +++|.|.||||||||++.|+..+.
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~   24 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP   24 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC
Confidence            579999999999999999999873

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.64  E-value=9.2e-05  Score=70.79  Aligned_cols=46  Identities=17%  Similarity=0.238  Sum_probs=36.3

Q ss_pred             EEEeeeEEEcCccceeecccccceeEecCCc-EEEEEcCCCCcHhHHHHHHHHhh
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus        78 l~~~~l~~~~~~~~~~~~~l~~vsl~i~~Ge-~~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      |.++|+...++.        +.++|....|+ ++.|+|+||+|||||+++|.-.+
T Consensus         6 l~l~nf~~~~~~--------~~~~~~~~~~~~~~~i~G~Ng~GKttll~ai~~~L   52 (650)
T TIGR03185         6 LTLENFGPYRGR--------QTFDLSPSSPKPIILIGGLNGAGKTTLLDAIQLAL   52 (650)
T ss_pred             EEEeceEEEcCC--------ceeeeecCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            778888765543        26778887776 88999999999999999985443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=97.63  E-value=6.4e-05  Score=67.36  Aligned_cols=28  Identities=39%  Similarity=0.610  Sum_probs=26.1

Q ss_pred             cCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +++..+.|+|++||||||++++|++.+.
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~  159 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELA  159 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4789999999999999999999999884

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.63  E-value=4.5e-05  Score=61.94  Aligned_cols=25  Identities=24%  Similarity=0.456  Sum_probs=23.4

Q ss_pred             cEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 e~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      -+++|+|+||||||||++.|.+++.
T Consensus         7 ~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          7 PLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHh
Confidence            4899999999999999999999986

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.63  E-value=2.2e-05  Score=65.93  Aligned_cols=37  Identities=24%  Similarity=0.497  Sum_probs=31.2

Q ss_pred             ccccceeEecCCc-EEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           96 PTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        96 ~l~~vsl~i~~Ge-~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      ++..++..++++. ++.|+|++|+|||||++.++..+.
T Consensus        31 ~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            4557777777765 899999999999999999998875

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=97.62  E-value=5.1e-05  Score=72.19  Aligned_cols=25  Identities=40%  Similarity=0.765  Sum_probs=23.2

Q ss_pred             cEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 e~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      -++||.|+||||||||++.|+++++
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglLp   90 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFMP   90 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhCC
Confidence            5899999999999999999999973

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=97.62  E-value=8.1e-05  Score=68.32  Aligned_cols=25  Identities=28%  Similarity=0.545  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 e~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      -++||+|++|||||||++.|.+++.
T Consensus       213 lIIGIsG~qGSGKSTLa~~L~~lL~  237 (460)
T PLN03046        213 LVIGFSAPQGCGKTTLVFALDYLFR  237 (460)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5789999999999999999999996

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.60  E-value=5.7e-05  Score=64.52  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=31.3

Q ss_pred             cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        99 ~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      |.=+.+.+|+.++|+|++|+|||||++.|++...
T Consensus         8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~   41 (249)
T cd01128           8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT   41 (249)
T ss_pred             eeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            5567899999999999999999999999999885

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=97.59  E-value=7.3e-05  Score=77.38  Aligned_cols=39  Identities=31%  Similarity=0.350  Sum_probs=32.5

Q ss_pred             cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhcccCCCceee
Q 029679           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus        99 ~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~~~~p~~G~i  141 (189)
                      +..|++..| +++|+|+||+||||++++|++++.   +..|.+
T Consensus        20 ~~~~~f~~~-~~~l~G~NGaGKSTll~ai~~~l~---~~~~~~   58 (1486)
T PRK04863         20 ARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI---PDLTLL   58 (1486)
T ss_pred             ceEEEecCC-eEEEECCCCCCHHHHHHHHHcccc---CCCCeE
Confidence            557888776 999999999999999999999996   544443

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=97.58  E-value=7.6e-05  Score=68.66  Aligned_cols=34  Identities=21%  Similarity=0.250  Sum_probs=32.7

Q ss_pred             cceeEecCCcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        99 ~vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      |.-|++.+|+.++|+|+||+|||||+++|+++..
T Consensus       150 D~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~  183 (442)
T PRK08927        150 NTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNAD  183 (442)
T ss_pred             eeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            8899999999999999999999999999999886

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.58  E-value=7.9e-05  Score=73.75  Aligned_cols=31  Identities=29%  Similarity=0.540  Sum_probs=23.6

Q ss_pred             ceeEecCCcEEEEEcCCCCcHhHHHHHHHHhh
Q 029679          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       100 vsl~i~~Ge~~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      +.+.+.+| +++|+||||||||||+.+|.=++
T Consensus        17 ~~i~f~~~-~~~i~G~NGsGKS~ll~ai~~~l   47 (1179)
T TIGR02168        17 TTINFDKG-ITGIVGPNGCGKSNIVDAIRWVL   47 (1179)
T ss_pred             eeEEecCC-cEEEECCCCCChhHHHHHHHHHH
Confidence            34555544 89999999999999997755444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.57  E-value=3.6e-05  Score=67.92  Aligned_cols=34  Identities=26%  Similarity=0.372  Sum_probs=31.2

Q ss_pred             cceeEecC--CcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679           99 ALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        99 ~vsl~i~~--Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      +|+..+++  ++.++|+|.+|+|||||++.|++.++
T Consensus       152 ~i~~~~~~~~~~~~~~~G~~~~gkstl~~~l~~~~~  187 (325)
T TIGR01526       152 HIPREVRPFFVKTVAILGGESTGKSTLVNKLAAVFN  187 (325)
T ss_pred             hCCHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            57788888  99999999999999999999999875

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>cd04159 Arl10_like Arl10-like subfamily

Probab=97.57  E-value=4.8e-05  Score=57.15  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHhHHHHHHHHhh
Q 029679          110 VGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~r~l~Gl~  131 (189)
                      ++|+|++|||||||++.|.+..
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~   23 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQ   23 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCC
Confidence            6899999999999999999973

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=97.56  E-value=0.00012  Score=61.63  Aligned_cols=26  Identities=38%  Similarity=0.708  Sum_probs=24.2

Q ss_pred             CcEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 Ge~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      .-++||.|+|||||||+++.|.-.++
T Consensus         8 ~iiIgIaG~SgSGKTTva~~l~~~~~   33 (218)
T COG0572           8 VIIIGIAGGSGSGKTTVAKELSEQLG   33 (218)
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            45899999999999999999999996

>PRK05439 pantothenate kinase; Provisional

Probab=97.54  E-value=9.7e-05  Score=65.15  Aligned_cols=25  Identities=36%  Similarity=0.507  Sum_probs=23.2

Q ss_pred             cEEEEEcCCCCcHhHHHHHHHHhhc
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 e~~~ivG~sGsGKSTL~r~l~Gl~~  132 (189)
                      -++||.|++||||||+++.|..++.
T Consensus        87 ~iIgIaG~~gsGKSTla~~L~~~l~  111 (311)
T PRK05439         87 FIIGIAGSVAVGKSTTARLLQALLS  111 (311)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	189
2ga8_A	359	Crystal Structure Of Yfh7 From Saccharomyces Cerevi		7e-05

>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase With A Circular Permutation. Length = 359

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
           ++A ++PMDGFHL    LD  +DP+ AH RRG
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRG 185

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	189
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	1e-18
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	2e-07
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	4e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	9e-09
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	1e-07
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	9e-07
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	4e-06
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	1e-05
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	1e-05
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	3e-05
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	5e-05
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	5e-05
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	9e-05
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	2e-04
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	3e-04
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	3e-04
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	4e-04
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	5e-04

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359

 Score = 81.3 bits (200), Expect = 1e-18
 Identities = 30/139 (21%), Positives = 49/139 (35%), Gaps = 11/139 (7%)

Query: 43  RRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALAS 102
                 +        +    +   +  ++  E+   +    D V D   Q   P    A 
Sbjct: 58  EHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEMIENQGLFKDHVEDVNFQ---PVKYSAL 114

Query: 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHL 162
             N +    +    G   +   A V   +N     + S         ++A ++PMDGFHL
Sbjct: 115 TSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDS--------INIAQIVPMDGFHL 166

Query: 163 YLSQLDAMEDPKEAHARRG 181
               LD  +DP+ AH RRG
Sbjct: 167 SRRCLDLFKDPQTAHKRRG 185

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 87  YDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146
              LA  +L         N +  V L G PG+GKST+A E+ + IN+ +    S   + +
Sbjct: 4   THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVI 63

Query: 147 KP--PDVATVLPMDGFH-LYLSQLDAMED 172
           +        V  +D    L  +++  M +
Sbjct: 64  EVNDRLKPMVNLVDSLKTLQPNKVAEMIE 92

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208

 Score = 74.8 bits (184), Expect = 4e-17
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 20/96 (20%)

Query: 86  VYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145
              AL Q +L    L      + +V L+G PG+GKSTL+  +   ++             
Sbjct: 3   TLAALCQGVL--ERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLP-------- 52

Query: 146 VKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181
                 A V+PMDGFHL    L    +P+    R+G
Sbjct: 53  ------AEVVPMDGFHLDNRLL----EPRGLLPRKG 78

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 5e-09
 Identities = 35/217 (16%), Positives = 69/217 (31%), Gaps = 68/217 (31%)

Query: 1   MDVSSLSTTPRACLSSSSTE---STP-------------LKRGELPSGHDGFL------S 38
            D   +   P++ LS    +    +              L + E       F+      +
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE--EMVQKFVEEVLRIN 90

Query: 39  FSWIR---RNTNAQP-----VFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDAL 90
           + ++    +    QP     ++ + R  + N   +    +  R  P ++ R       AL
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR------QAL 144

Query: 91  AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR--RI-----NKI-WPQKASSF 142
              L P    A NV +       G  G+GK+ +A +V    ++      KI W     + 
Sbjct: 145 -LELRP----AKNVLI-D-----GVLGSGKTWVALDVCLSYKVQCKMDFKIFW----LNL 189

Query: 143 DSQVKPPDVATVLPMDGFHL-----YLSQLDAMEDPK 174
            +   P  V  +  +          + S+ D   + K
Sbjct: 190 KNCNSPETV--LEMLQKLLYQIDPNWTSRSDHSSNIK 224

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 52.0 bits (125), Expect = 9e-09
 Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 19/92 (20%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
           + +  D L + +L     A     + ++G+ G   +GK+TLA ++ + + +         
Sbjct: 3   LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGIS----- 52

Query: 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174
                      V  MD   +  ++     + +
Sbjct: 53  ---------VCVFHMDDHIVERAKRYHTGNEE 75

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Length = 308

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 15/88 (17%), Positives = 26/88 (29%), Gaps = 15/88 (17%)

Query: 87  YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           Y +   R           N +    I+ +AG    GKST A  +   +++    +     
Sbjct: 57  YISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR---- 112

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAME 171
                     ++  DGF      L    
Sbjct: 113 --------VELITTDGFLHPNQVLKERG 132

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Length = 321

 Score = 46.9 bits (111), Expect = 9e-07
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 15/88 (17%)

Query: 87  YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           Y    Q L   +             I+G+AG    GKST +  +   +++          
Sbjct: 69  YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN---- 124

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAME 171
                     V+  DGF    ++L+   
Sbjct: 125 --------VEVITTDGFLYSNAKLEKQG 144

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Length = 312

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 12/80 (15%)

Query: 92  QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 151
              L       +  V  I+G+AG    GKST A  +   + +                  
Sbjct: 75  AEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPR------------ 122

Query: 152 ATVLPMDGFHLYLSQLDAME 171
             ++  DGF    ++L    
Sbjct: 123 VDLVTTDGFLYPNAELQRRN 142

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 9/60 (15%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G++G   +GKS++ A++V+ + +         +          +L  D F+  L+   
Sbjct: 24  LIGVSGGTASGKSSVCAKIVQLLGQ---------NEVDYRQKQVVILSQDSFYRVLTSEQ 74

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Length = 245

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 10/60 (16%), Positives = 26/60 (43%), Gaps = 9/60 (15%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G++G   +GKST+  +++  + +   +         +      +L  D F+  L+   
Sbjct: 27  LIGVSGGTASGKSTVCEKIMELLGQNEVE---------QRQRKVVILSQDRFYKVLTAEQ 77

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 41.8 bits (98), Expect = 3e-05
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
           K +  + GP G GKST    +  +++ 
Sbjct: 2   KKLYIITGPAGVGKSTTCKRLAAQLDN 28

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Length = 341

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           + + +VE+R     + AL+ +LL   A+         +G+ G PGAGKST        +
Sbjct: 26  QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Length = 337

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           R I + E+R     + A  + L+   A+         VG+ G PG GKST    +   +
Sbjct: 25  RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A* Length = 355

 Score = 41.0 bits (96), Expect = 9e-05
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           R I +VE+      +   AQ+LL    L  +    H VG+ G PG GKST    +   +
Sbjct: 49  RAITLVEST--RPDHREQAQQLL--LRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Length = 349

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 18/49 (36%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
              +   +               +   VGL+GPPGAGKST      + +
Sbjct: 50  AQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKML 98

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Length = 207

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 18/64 (28%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G++G   +GK+TLA    + + K  P                +V+  D F    S+++
Sbjct: 23  IIGISGVTNSGKTTLA----KNLQKHLPN--------------CSVISQDDFFKPESEIE 64

Query: 169 AMED 172
             ++
Sbjct: 65  TDKN 68

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 16/78 (20%)

Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
            KH I+ + G  GAG ST    V    ++I+ ++             A  +  D FH + 
Sbjct: 3   KKHPIISVTGSSGAGTST----VKHTFDQIFRREGVK----------AVSIEGDAFHRFN 48

Query: 165 -SQLDAMEDPKEAHARRG 181
            + + A  D + A     
Sbjct: 49  RADMKAELDRRYAAGDAT 66

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Length = 290

 Score = 39.2 bits (90), Expect = 4e-04
 Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 11/69 (15%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
            +  +GP G+GKS  + ++   + + +  + S                +D F+L      
Sbjct: 33  FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIG-----------YASIDDFYLTHEDQL 81

Query: 169 AMEDPKEAH 177
            + +  + +
Sbjct: 82  KLNEQFKNN 90

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Length = 211

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 17/60 (28%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G+AG   +GK+TLA    + +       A +   +V       +LPMD ++  L  L 
Sbjct: 8   VIGIAGGTASGKTTLA----QAL-------ARTLGERV------ALLPMDHYYKDLGHLP 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	189
d1odfa_	286	c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker'	6e-09
d1sq5a_	308	c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi	7e-08
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	1e-07
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	2e-07
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	7e-07
d2qm8a1	323	c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo	2e-05
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	5e-05
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	5e-05
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	7e-05
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	1e-04
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	2e-04
d1w5sa2	287	c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t	2e-04
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	3e-04
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	5e-04
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	6e-04
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	9e-04
d1m8pa3	183	c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d	0.001
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.001
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	0.001
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	0.001
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	0.001
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	0.001
d1htwa_	158	c.37.1.18 (A:) Hypothetical protein HI0065 {Haemop	0.001
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	0.002
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	0.002
d1ukza_	196	c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Sac	0.002
d1rkba_	173	c.37.1.1 (A:) Adenylate kinase {Human (Homo sapien	0.002
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	0.002
d1x6va3	195	c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kin	0.003
d3adka_	194	c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [	0.004
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	0.004
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	0.004

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.1 bits (124), Expect = 6e-09
 Identities = 12/96 (12%), Positives = 33/96 (34%), Gaps = 13/96 (13%)

Query: 82  CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141
            +D   + L + +       +       +  +GP G+GKS  + ++   + + +  + S 
Sbjct: 4   VLDYTIEFLDKYIPE--WFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKS- 60

Query: 142 FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH 177
                          +D F+L       + +  + +
Sbjct: 61  ----------IGYASIDDFYLTHEDQLKLNEQFKNN 86

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

 Score = 48.9 bits (116), Expect = 7e-08
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 12/62 (19%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+ +AG    GKST A  +   +++             +   V  ++  DGF      L 
Sbjct: 82  IISIAGSVAVGKSTTARVLQALLSRW-----------PEHRRVE-LITTDGFLHPNQVLK 129

Query: 169 AM 170
             
Sbjct: 130 ER 131

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 48.0 bits (114), Expect = 1e-07
 Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 16/79 (20%)

Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
            KH I+ + G  GAG ST+        ++I+ ++             A  +  D FH + 
Sbjct: 2   KKHPIISVTGSSGAGTSTVK----HTFDQIFRREGVK----------AVSIEGDAFHRFN 47

Query: 165 -SQLDAMEDPKEAHARRGG 182
            + + A  D + A      
Sbjct: 48  RADMKAELDRRYAAGDATF 66

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (110), Expect = 2e-07
 Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G++G   +GKS++ A++V+ + +                    +L  D F+  L+   
Sbjct: 4   LIGVSGGTASGKSSVCAKIVQLLGQNEVD---------YRQKQVVILSQDSFYRVLTSEQ 54

Query: 169 AMEDPKEAHA 178
             +  K    
Sbjct: 55  KAKALKGQFN 64

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 45.5 bits (106), Expect = 7e-07
 Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 19/100 (19%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
           + +  D L + +L     A     + ++G+ G   +GK+TLA ++ + + +         
Sbjct: 3   LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV---- 53

Query: 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGG 182
                      V  MD   +  ++     + +        
Sbjct: 54  ----------CVFHMDDHIVERAKRYHTGNEEWFEYYYLQ 83

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
           R I + E+R     + A  + L+   A+         VG+ G PG GKST    +   + 
Sbjct: 21  RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 76

Query: 133 KIWPQKASS 141
               + A  
Sbjct: 77  AAGHKVAVL 85

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (94), Expect = 5e-05
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
           + + +VE+R     + AL+ +LL   A+         +G+ G PGAGKST        + 
Sbjct: 24  QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 79

Query: 133 KIW 135
           +  
Sbjct: 80  REG 82

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 40.0 bits (92), Expect = 5e-05
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIW 135
           HI  L G  G+GKS +A+EV  +++  +
Sbjct: 7   HIYVLMGVSGSGKSAVASEVAHQLHAAF 34

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 39.2 bits (90), Expect = 7e-05
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132
           K +  + GP G GKST    +  +++
Sbjct: 2   KKLYIITGPAGVGKSTTCKRLAAQLD 27

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
           K I+   G PG+GKST A E + +    +
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFY 30

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (87), Expect = 2e-04
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           ++  A   G GK+TL  +++  +  
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPALCA 28

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 2/104 (1%)

Query: 82  CMDEVYDALAQRLL-PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140
                 +ALA+  L    + A   +V  I G  G  G GK+TLA   V+R+++    K  
Sbjct: 20  VRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE-AAAKEG 78

Query: 141 SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV 184
               Q                L + Q       + A A    + 
Sbjct: 79  LTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKA 122

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 37.7 bits (86), Expect = 3e-04
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
             ++ L G   AGKS +   +   + + W
Sbjct: 3   TRMIILNGGSSAGKSGIVRCLQSVLPEPW 31

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           +V + G PG G +T +   +  + K
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRK 27

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.9 bits (84), Expect = 6e-04
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKI 134
            ++ + G P  GK+ ++ ++ R +N I
Sbjct: 3   TLIVMVGLPARGKTYISKKLTRYLNFI 29

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 36.5 bits (83), Expect = 9e-04
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           I  + G PG GKST+ A+V   ++ 
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDN 27

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
            + L G   +GK  +A  +   +N+
Sbjct: 8   TIFLTGYMNSGKDAIARALQVTLNQ 32

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.0 bits (82), Expect = 0.001
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           +  + G   +GK+TL  + V    +
Sbjct: 3   VWQVVGYKHSGKTTLMEKWVAAAVR 27

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           I+ L+G PG+GKST+A  +     
Sbjct: 6   ILLLSGHPGSGKSTIAEALANLPG 29

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)

Query: 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
            K +  + G   +GKS L  ++    N   
Sbjct: 7   AKTVA-ILGGESSGKSVLVNKLAAVFNTTS 35

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 35.9 bits (81), Expect = 0.001
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
           ++I  L GP GAGKST+  ++ +++N  +
Sbjct: 3   RNIF-LVGPMGAGKSTIGRQLAQQLNMEF 30

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           +V + G PG+GK T  A +VR   
Sbjct: 8   VVFVLGGPGSGKGTQCANIVRDFG 31

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Length = 158

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 89  ALAQRLLPTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
              ++      L      K  +V L G  GAGK+TL   +++ I      K+ ++
Sbjct: 16  RFGKKF--AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTY 68

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           ++ + GP GAGK TL   +   + 
Sbjct: 5   VITIDGPSGAGKGTLCKAMAEALQ 28

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 7/28 (25%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIW 135
           +I+ + G PG GK+++A  +   ++   
Sbjct: 7   NIL-ITGTPGTGKTSMAEMIAAELDGFQ 33

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
           S   V  I  + G PGAGK T   ++V+  +
Sbjct: 4   SPDQVSVIF-VLGGPGAGKGTQCEKLVKDYS 33

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 112 LAGPPGAGKSTLAAEVVRRIN 132
           L G PG GK+TL  E+  +  
Sbjct: 9   LTGTPGVGKTTLGKELASKSG 29

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
           +H+  L GPPG GK+TL  +    +  
Sbjct: 2   RHV-FLTGPPGVGKTTLIHKASEVLKS 27

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 0.003
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWP 136
            V L G  GAGK+T++  +   +     
Sbjct: 21  TVWLTGLSGAGKTTVSMALEEYLVCHGI 48

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 8/33 (24%), Positives = 17/33 (51%)

Query: 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
           +   +    I+ + G PG+GK T   ++V++  
Sbjct: 1   MEEKLKKSKIIFVVGGPGSGKGTQCEKIVQKYG 33

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 10/52 (19%), Positives = 17/52 (32%)

Query: 84  DEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
            +  + L   L         V       L G PG+GK++L + +        
Sbjct: 9   KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNV 60

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.1 bits (77), Expect = 0.004
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWP 136
           +V   G PGAGKST   E +     +  
Sbjct: 16  VVVAVGFPGAGKSTFIQEHLVSAGYVHV 43

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.92
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.92
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.92
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.91
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.91
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.91
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.91
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.89
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.88
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.88
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.87
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.83
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.83
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.83
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.82
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.81
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.8
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.78
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.68
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.66
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.65
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.34
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.09
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.07
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	98.05
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.01
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.99
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.99
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.95
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.93
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.92
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.88
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.87
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.87
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.85
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.85
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.84
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.81
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.81
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.79
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.79
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.76
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.72
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.71
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.68
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.68
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.66
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.66
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.65
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.63
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.63
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.62
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.61
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.61
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	97.61
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.6
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.57
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.53
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.53
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.52
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.51
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.5
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.48
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.48
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.48
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.48
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.47
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.44
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.43
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.43
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.42
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.4
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.39
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.38
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.36
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.36
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.34
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.34
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.33
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.32
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.32
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.32
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.31
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.3
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.29
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.29
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.28
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.27
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.25
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.25
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.24
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.24
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.24
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.24
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.23
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.23
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.22
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.21
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.2
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	97.2
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.2
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.19
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.18
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.18
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.16
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.16
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.14
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.14
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.13
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.13
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.11
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.11
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.1
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.09
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.08
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.05
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.03
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.03
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.01
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.01
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.0
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.0
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.0
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.99
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.97
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.96
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.95
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.94
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.92
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.92
d1okkd2	207	GTPase domain of the signal recognition particle r	96.9
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.86
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.85
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.84
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.82
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.81
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.81
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	96.81
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.79
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.79
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.76
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.75
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.74
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.72
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.71
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.71
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.71
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.7
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.69
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.68
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.67
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.66
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.66
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.65
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.64
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.64
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.63
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.63
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.63
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.61
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.57
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.55
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.54
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.54
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.53
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.53
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.53
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.52
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.51
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.48
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.45
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.43
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.43
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.42
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.41
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.41
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.4
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.4
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.39
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	96.38
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.38
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.37
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.37
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.37
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.35
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.34
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.29
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.28
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.25
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.24
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.24
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.23
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.23
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.22
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	96.21
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.2
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	96.2
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.18
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.18
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.16
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.15
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	96.13
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	96.13
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.1
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.09
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.09
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.05
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.04
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.01
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	96.01
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.98
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.98
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.95
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	95.95
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.95
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.94
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.94
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	95.94
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	95.94
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.92
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.83
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	95.79
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.77
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.77
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.75
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.73
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.69
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.64
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.62
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.61
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	95.54
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.47
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.46
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.44
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.36
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.31
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.3
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.11
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.11
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	95.07
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.04
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	94.96
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	94.83
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.8
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.75
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.58
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.47
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.39
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.25
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	94.01
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.87
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.81
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.7
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	93.6
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	93.32
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	93.29
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.11
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	92.55
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	92.46
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	92.14
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	91.21
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	90.17
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	88.31
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	87.65
d1khba1	363	Cytosolic phosphoenolpyruvate carboxykinase (GTP-h	86.92
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	84.29
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	84.05
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	83.68
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	82.11
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	81.47
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	81.39
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	81.26

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=5.1e-26  Score=147.44  Aligned_cols=103  Identities=17%  Similarity=0.193  Sum_probs=85.3

Q ss_pred             EEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCC----C----
Q ss_conf             49996438983754401102116216854994999986999957699999997413258995023169999----9----
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----P----  148 (189)
Q Consensus        77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~----~----  148 (189)
                      ||+++|+++.|+.....+.+|+|+||++++||+++|+|+||||||||+++|+|+++   |++|++...+..    .    
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~---p~sG~I~~~g~~i~~~~~~~~   77 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSESEL   77 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC---CSEEEEEETTEEECTTCHHHH
T ss_pred             CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC---CCCCCEEECCEEEEECCHHHH
T ss_conf             97998279996999814898615057886997999989998988899998758863---667732886768520875551


Q ss_pred             ---CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             ---874899706778777886684666999999749999
Q 029679          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV  184 (189)
Q Consensus       149 ---~~v~~vi~~~~~~l~~~~ltv~enl~~~~~~~g~~~  184 (189)
                         ++..++++|+ +++++. +++++|+.+++...+.+.
T Consensus        78 ~~~rr~ig~VfQ~-~~l~~~-~tv~eni~~~l~~~~~~~  114 (240)
T d3dhwc1          78 TKARRQIGMIFQH-FNLLSS-RTVFGNVALPLELDNTPK  114 (240)
T ss_dssp             HHHHHHEEECCSS-CCCCTT-SBHHHHHHHHHHTTTCCT
T ss_pred             HHHHCCCCCCCCC-CCCCCC-CCHHHHHHHHHHHCCCCH
T ss_conf             1554166430225-222799-649999999999849998

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.92  E-value=3e-25  Score=143.55  Aligned_cols=101  Identities=18%  Similarity=0.259  Sum_probs=83.2

Q ss_pred             EEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCC--------
Q ss_conf             499964389837544011021162168549949999869999576999999974132589950231699999--------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------  148 (189)
Q Consensus        77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~~--------  148 (189)
                      ||+++|+++.|+...+.+.+|+++||++++||+++|+|+||||||||+++|+|+++   |++|++...+...        
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~---p~sG~I~~~g~~i~~~~~~~~   77 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL   77 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred             CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCC---CCCCEEEECCEECCCCCHHHC
T ss_conf             98999079994899820898713377884997999988999982165575068877---776626999998576885551


Q ss_pred             ----CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             ----8748997067787778866846669999997499
Q 029679          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGG  182 (189)
Q Consensus       149 ----~~v~~vi~~~~~~l~~~~ltv~enl~~~~~~~g~  182 (189)
                          ++..++++|+ +.+++. +++.+|+++++.....
T Consensus        78 ~~~r~~~ig~v~Q~-~~l~~~-~tv~eni~~~~~~~~~  113 (230)
T d1l2ta_          78 TKIRRDKIGFVFQQ-FNLIPL-LTALENVELPLIFKYR  113 (230)
T ss_dssp             HHHHHHHEEEECTT-CCCCTT-SCHHHHHHHHHHTCCS
T ss_pred             CHHHCCEEEEEECC-HHHCCC-CCHHHHHHHHHHHHCC
T ss_conf             23125557788041-241768-6688877578887224

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.92  E-value=3.5e-25  Score=143.22  Aligned_cols=101  Identities=14%  Similarity=0.157  Sum_probs=83.1

Q ss_pred             CCEEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCC-------
Q ss_conf             7749996438983754401102116216854994999986999957699999997413258995023169999-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~-------  147 (189)
                      |..|+++|+++.|+.    ..+++++||++++||+++|+|+||||||||+++|+|+++   |++|++...+..       
T Consensus         1 M~~i~v~nl~k~yg~----~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~---p~sG~I~~~g~~i~~~~~~   73 (240)
T d1g2912           1 MAGVRLVDVWKVFGE----VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG   73 (240)
T ss_dssp             CEEEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred             CCCEEEEEEEEEECC----EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC---CCCCEEEECCEEECCCCHH
T ss_conf             981899869999899----999856066886998999999999809999999964878---8989899999980356644


Q ss_pred             -----CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             -----9874899706778777886684666999999749999
Q 029679          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV  184 (189)
Q Consensus       148 -----~~~v~~vi~~~~~~l~~~~ltv~enl~~~~~~~g~~~  184 (189)
                           .++..++++|+ +.+++. +++.+|++++...++.+.
T Consensus        74 ~~~~~~~r~ig~v~Q~-~~L~~~-ltV~eni~~~~~~~~~~~  113 (240)
T d1g2912          74 IFVPPKDRDIAMVFQS-YALYPH-MTVYDNIAFPLKLRKVPR  113 (240)
T ss_dssp             EECCGGGSSEEEECSC-CCCCTT-SCHHHHHHHHHHHTTCCH
T ss_pred             HHCCCCCCCCEECCCC-HHHCCH-HHHHHHHHHHHHHCCCCH
T ss_conf             4245322551200221-222310-116676330687729998

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=4e-25  Score=142.96  Aligned_cols=98  Identities=16%  Similarity=0.245  Sum_probs=80.4

Q ss_pred             EEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCC------CCCE
Q ss_conf             9996438983754401102116216854994999986999957699999997413258995023169999------9874
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDV  151 (189)
Q Consensus        78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~------~~~v  151 (189)
                      |+++|+++.|+..    .+++++||++++||+++|+|+||||||||+++|+|+++   |++|++...+..      .++.
T Consensus         1 Iev~nv~k~yg~~----~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~~r~   73 (232)
T d2awna2           1 VQLQNVTKAWGEV----VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAERG   73 (232)
T ss_dssp             EEEEEEEEEETTE----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEESSSCCTTSCGGGTC
T ss_pred             CEEEEEEEEECCE----EEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC---CCCCEEEECCEECCCCCHHHCE
T ss_conf             9999999998999----99811177886998999998999829999999965878---8888899999977888644432


Q ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             899706778777886684666999999749999
Q 029679          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGGEV  184 (189)
Q Consensus       152 ~~vi~~~~~~l~~~~ltv~enl~~~~~~~g~~~  184 (189)
                      +++++|+ +.+++. +++++|+.++....+.+.
T Consensus        74 ig~v~Q~-~~l~~~-~tv~eni~~~~~~~~~~~  104 (232)
T d2awna2          74 VGMVFQS-YALYPH-LSVAENMSFGLKLAGAKK  104 (232)
T ss_dssp             EEEECSS-CCC----------------------
T ss_pred             EEEECCC-CCCCCC-HHHHHHHHHHHHHCCCCH
T ss_conf             2234334-202643-337889789998759988

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.91  E-value=1.7e-25  Score=144.77  Aligned_cols=102  Identities=16%  Similarity=0.212  Sum_probs=82.0

Q ss_pred             CCEEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCC-------
Q ss_conf             7749996438983754401102116216854994999986999957699999997413258995023169999-------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK-------  147 (189)
Q Consensus        75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~-------  147 (189)
                      |..|+++|+++.|+..  .+.+|+++||++++||+++|+|+||||||||+++|+|++.   |++|++...+..       
T Consensus         1 M~~i~v~nlsk~y~~g--~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~---p~~G~I~~~g~~i~~~~~~   75 (242)
T d1oxxk2           1 MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL   75 (242)
T ss_dssp             CCCEEEEEEEEEEGGG--TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred             CCEEEEEEEEEEECCC--CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCCEEEECCEEEECCCHH
T ss_conf             9889997579998899--9899804078987998999998999809999999975868---8874599999995137311


Q ss_pred             ----CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             ----987489970677877788668466699999974999
Q 029679          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGE  183 (189)
Q Consensus       148 ----~~~v~~vi~~~~~~l~~~~ltv~enl~~~~~~~g~~  183 (189)
                          .++..++++|+ +.+++. ++++||+++++...+.+
T Consensus        76 ~~~~~rr~ig~vfQ~-~~L~p~-ltv~eni~~~l~~~~~~  113 (242)
T d1oxxk2          76 IVPPEDRKIGMVFQT-WALYPN-LTAFENIAFPLTNMKMS  113 (242)
T ss_dssp             SSCGGGSCEEEEETT-SCCCTT-SCHHHHHHGGGTTSSCC
T ss_pred             HCCHHHCCCEEEECC-CCCCCC-CCHHHHHHHHHHHHCCC
T ss_conf             153120451477304-334666-65777766556761379

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.91  E-value=2.6e-25  Score=143.89  Aligned_cols=97  Identities=11%  Similarity=0.187  Sum_probs=80.2

Q ss_pred             EEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCC------CCC
Q ss_conf             49996438983754401102116216854994999986999957699999997413258995023169999------987
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPD  150 (189)
Q Consensus        77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~------~~~  150 (189)
                      ||+++|+++.|+.     .+|+++||++++||+++|+|+||||||||+++|+|++.   |++|++...+..      .++
T Consensus         1 mi~v~nlsk~y~~-----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~---p~sG~I~~~G~~i~~~~~~~r   72 (229)
T d3d31a2           1 MIEIESLSRKWKN-----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH   72 (229)
T ss_dssp             CEEEEEEEEECSS-----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred             CEEEEEEEEEECC-----EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCCEEEECCEECCCCCHHHH
T ss_conf             9899989999499-----78843378987998999998999829999999964768---887889995673465216574


Q ss_pred             EEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             489970677877788668466699999974999
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGGE  183 (189)
Q Consensus       151 v~~vi~~~~~~l~~~~ltv~enl~~~~~~~g~~  183 (189)
                      ..++++|+ +.+|+. ++|.+|+.++....+..
T Consensus        73 ~ig~v~Q~-~~l~~~-~tV~enl~~~~~~~~~~  103 (229)
T d3d31a2          73 DIAFVYQN-YSLFPH-MNVKKNLEFGMRMKKIK  103 (229)
T ss_dssp             TCEEECTT-CCCCTT-SCHHHHHHHHHHHHCCC
T ss_pred             CCEEECCC-CCCCCC-CCHHHHHHHHHHHCCCC
T ss_conf             05615121-111746-65778888877640553

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.91  E-value=3.9e-25  Score=143.01  Aligned_cols=100  Identities=11%  Similarity=0.159  Sum_probs=80.7

Q ss_pred             CCEEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCC------C
Q ss_conf             7749996438983754401102116216854994999986999957699999997413258995023169999------9
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------P  148 (189)
Q Consensus        75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~------~  148 (189)
                      +..|+++|++++|++    ..+|+++||++++||+++|+|+||||||||+++|+|+++   |++|.+...+..      .
T Consensus         4 M~~I~v~nlsk~yg~----~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~   76 (239)
T d1v43a3           4 MVEVKLENLTKRFGN----FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK   76 (239)
T ss_dssp             CCCEEEEEEEEEETT----EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred             CCEEEEEEEEEEECC----EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC---CCCCEEEECCEECCCCCCC
T ss_conf             074999879999999----999813067887998999999999829999999975899---9878799916413547700


Q ss_pred             CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             87489970677877788668466699999974999
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGGE  183 (189)
Q Consensus       149 ~~v~~vi~~~~~~l~~~~ltv~enl~~~~~~~g~~  183 (189)
                      ++..++++|+ +.+++. +++.+|+.++...++.+
T Consensus        77 ~r~ig~v~Q~-~~l~~~-ltv~enl~~~~~~~~~~  109 (239)
T d1v43a3          77 DRNISMVFQS-YAVWPH-MTVYENIAFPLKIKKFP  109 (239)
T ss_dssp             GGTEEEEEC-------C-CCHHHHHHTTCC--CCC
T ss_pred             CCEEEEEEEC-HHHCCC-CHHHHHHHHHHHHCCCC
T ss_conf             0158998003-353422-20999999999873999

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.89  E-value=3.3e-23  Score=133.29  Aligned_cols=93  Identities=15%  Similarity=0.203  Sum_probs=76.0

Q ss_pred             EEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCC--------
Q ss_conf             499964389837544011021162168549949999869999576999999974132589950231699999--------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------  148 (189)
Q Consensus        77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~~--------  148 (189)
                      .|+++|+++.|+..    .+|++|||++++||++||+|+||||||||+++|+|+++   |++|++...+...        
T Consensus         2 ~Lev~nl~k~yg~~----~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~~   74 (258)
T d1b0ua_           2 KLHVIDLHKRYGGH----EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG   74 (258)
T ss_dssp             CEEEEEEEEEETTE----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred             EEEEEEEEEEECCE----EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCCCEEECCEEECCCCCCCH
T ss_conf             69999789998999----98815066886997999998999829999999974766---789977999999336775200


Q ss_pred             -------------CCEEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             -------------874899706778777886684666999999
Q 029679          149 -------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       149 -------------~~v~~vi~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                                   ++..++++|+ +.+++. +++.+|+.++..
T Consensus        75 ~~~~~~~~~~~~~r~~ig~vfQ~-~~l~~~-~tv~env~~~~~  115 (258)
T d1b0ua_          75 QLKVADKNQLRLLRTRLTMVFQH-FNLWSH-MTVLENVMEAPI  115 (258)
T ss_dssp             SEEESCHHHHHHHHHHEEEECSS-CCCCTT-SCHHHHHHHHHH
T ss_pred             HCCCCCHHHHHHHHCCEEEEEEC-HHHCCC-HHCCHHHHHHHH
T ss_conf             00235176799974544899833-231411-010213656578

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.88  E-value=2.5e-23  Score=133.86  Aligned_cols=95  Identities=21%  Similarity=0.260  Sum_probs=76.1

Q ss_pred             CCEEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCC------
Q ss_conf             77499964389837544011021162168549949999869999576999999974132589950231699999------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------  148 (189)
Q Consensus        75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~~------  148 (189)
                      ..+|+++|+++.|+.    ..+|+|+||++++||++||+|+||||||||+++|+|+++   |++|++...+...      
T Consensus         4 d~~Lev~~l~k~yg~----~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~---p~~G~I~~~G~~i~~~~~~   76 (240)
T d1ji0a_           4 DIVLEVQSLHVYYGA----IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAH   76 (240)
T ss_dssp             SEEEEEEEEEEEETT----EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred             CEEEEEEEEEEEECC----EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCCEEEECCCCCCCCCHH
T ss_conf             607999618999899----888830257888997999999999859999999967888---8803898424434466088


Q ss_pred             ---CCEEEEEECCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             ---874899706778777886684666999999
Q 029679          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (189)
Q Consensus       149 ---~~v~~vi~~~~~~l~~~~ltv~enl~~~~~  178 (189)
                         +.-..+++ |...+|+. +++.+|+.+...
T Consensus        77 ~~~r~gi~~~~-q~~~l~~~-ltv~en~~~~~~  107 (240)
T d1ji0a_          77 VINRMGIALVP-EGRRIFPE-LTVYENLMMGAY  107 (240)
T ss_dssp             HHHHTTEEEEC-SSCCCCTT-SBHHHHHHGGGT
T ss_pred             HHHHHCCCCCC-CCCCCCCC-CCHHHHHHHHHH
T ss_conf             88874235567-65545776-369999998887

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.88  E-value=3.5e-23  Score=133.15  Aligned_cols=94  Identities=12%  Similarity=0.139  Sum_probs=75.8

Q ss_pred             CCEEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCC------
Q ss_conf             77499964389837544011021162168549949999869999576999999974132589950231699999------
Q 029679           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------  148 (189)
Q Consensus        75 ~~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~~------  148 (189)
                      +.+|+++|+++.|+..    .+|++|||++++||++||+|+||||||||+++|+|+++   |++|++...+...      
T Consensus         2 M~iL~v~nlsk~yg~~----~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~---p~~G~I~~~g~~i~~~~~~   74 (254)
T d1g6ha_           2 MEILRTENIVKYFGEF----KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA   74 (254)
T ss_dssp             CEEEEEEEEEEEETTE----EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred             CCEEEEEEEEEEECCE----EEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCCEEEECCEECCCHHHH
T ss_conf             6669997789997996----88712179988997999999999849999999977976---8873799999966405699


Q ss_pred             ---CCEEEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             ---87489970677877788668466699999
Q 029679          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       149 ---~~v~~vi~~~~~~l~~~~ltv~enl~~~~  177 (189)
                         +.-..+++| ...+++. +++.+|+.++.
T Consensus        75 ~~~~~gi~~v~Q-~~~~~~~-ltv~enl~~~~  104 (254)
T d1g6ha_          75 ELYHYGIVRTFQ-TPQPLKE-MTVLENLLIGE  104 (254)
T ss_dssp             HHHHHTEEECCC-CCGGGGG-SBHHHHHHGGG
T ss_pred             HHHHHCCCCCCC-CCCCCCC-CEEEEEEEEHH
T ss_conf             999833872577-6424788-74232143013

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.87  E-value=1.9e-22  Score=129.43  Aligned_cols=97  Identities=18%  Similarity=0.189  Sum_probs=78.4

Q ss_pred             EEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCC-------C
Q ss_conf             499964389837544011021162168549949999869999576999999974132589950231699999-------8
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------P  149 (189)
Q Consensus        77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~~-------~  149 (189)
                      .|+++|+++.|+..    .+|+++||++.+|+++||+|+||||||||+++|+|+++   |++|++...+...       +
T Consensus         2 aI~v~nl~k~yg~~----~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~---p~~G~i~i~G~~i~~~~~~~~   74 (238)
T d1vpla_           2 AVVVKDLRKRIGKK----EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPHEVR   74 (238)
T ss_dssp             CEEEEEEEEEETTE----EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHHHHH
T ss_pred             CEEEEEEEEEECCE----EEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCCEEEECCEECCCCHHHHH
T ss_conf             78999589999999----99806256884897999999999999999999966988---788879998672446839887


Q ss_pred             CEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             748997067787778866846669999997499
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGG  182 (189)
Q Consensus       150 ~v~~vi~~~~~~l~~~~ltv~enl~~~~~~~g~  182 (189)
                      +..+++|++ ..+++. +++.+|+.+.....+.
T Consensus        75 ~~i~~vpq~-~~~~~~-ltv~e~l~~~~~~~~~  105 (238)
T d1vpla_          75 KLISYLPEE-AGAYRN-MQGIEYLRFVAGFYAS  105 (238)
T ss_dssp             TTEEEECTT-CCCCTT-SBHHHHHHHHHHHHCC
T ss_pred             HHEEEEEEC-CCCCCC-CCHHHHHHHHHHHCCC
T ss_conf             218675001-546878-6677888989986179

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.83  E-value=1.5e-21  Score=124.95  Aligned_cols=90  Identities=20%  Similarity=0.208  Sum_probs=70.2

Q ss_pred             EEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCC--------CC
Q ss_conf             4999643898375440110211621685499499998699995769999999741325899502316999--------99
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV--------KP  148 (189)
Q Consensus        77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~--------~~  148 (189)
                      ||+++|+++.|++. +  .+|+++||++++|+++||+|+||||||||+++|+|+++   |++|.+...+.        ..
T Consensus         1 mle~knvsf~Y~~~-~--~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~   74 (242)
T d1mv5a_           1 MLSARHVDFAYDDS-E--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLENW   74 (242)
T ss_dssp             CEEEEEEEECSSSS-S--CSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSCC
T ss_pred             CEEEEEEEEECCCC-C--CEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHC---CCCCEEEECCEEECCCCHHHH
T ss_conf             97999889987999-8--41422589985999999999999979999999999609---898779889988442467888


Q ss_pred             CCEEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf             874899706778777886684666999
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus       149 ~~v~~vi~~~~~~l~~~~ltv~enl~~  175 (189)
                      ++..++++|+ ..+|.  .++.+|+.+
T Consensus        75 r~~i~~v~Q~-~~lf~--~ti~eNi~~   98 (242)
T d1mv5a_          75 RSQIGFVSQD-SAIMA--GTIRENLTY   98 (242)
T ss_dssp             TTTCCEECCS-SCCCC--EEHHHHTTS
T ss_pred             HHHEEEECCC-CCCCC--CCHHHHEEC
T ss_conf             7436797566-54578--534543012

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.2e-21  Score=124.09  Aligned_cols=93  Identities=17%  Similarity=0.183  Sum_probs=73.9

Q ss_pred             EEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCC--------C
Q ss_conf             49996438983754401102116216854994999986999957699999997413258995023169999--------9
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--------P  148 (189)
Q Consensus        77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~--------~  148 (189)
                      .|+++|+++.|+.. ....+|+++||++++|++++|+|+||||||||+++|+|+++   |++|.+..++..        .
T Consensus        11 ~I~~~nvsf~Y~~~-~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~---p~~G~I~i~g~~i~~~~~~~~   86 (251)
T d1jj7a_          11 LVQFQDVSFAYPNR-PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ---PTGGQLLLDGKPLPQYEHRYL   86 (251)
T ss_dssp             CEEEEEEEECCTTS-TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHHHH
T ss_pred             EEEEEEEEEECCCC-CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCCEEEECCEECCHHHHHHH
T ss_conf             69999989988999-99976744389984998999999999849999999861437---876899889985311013788


Q ss_pred             CCEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf             8748997067787778866846669999
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~v~~vi~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++...+++|+ ..+|.  .++.+|+.++
T Consensus        87 r~~i~~v~Q~-~~lf~--~tv~eni~~g  111 (251)
T d1jj7a_          87 HRQVAAVGQE-PQVFG--RSLQENIAYG  111 (251)
T ss_dssp             HHHEEEECSS-CCCCS--SBHHHHHHCS
T ss_pred             HHHHHHCCCC-CCCCC--CCHHHHHHHH
T ss_conf             8776540456-50027--6346554542

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.83  E-value=1.6e-20  Score=119.81  Aligned_cols=98  Identities=20%  Similarity=0.280  Sum_probs=75.7

Q ss_pred             EEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCC---CCCEEE
Q ss_conf             49996438983754401102116216854994999986999957699999997413258995023169999---987489
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVAT  153 (189)
Q Consensus        77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~---~~~v~~  153 (189)
                      .|+++|+++.|+.   .  +++++||++++|++++|+|+||||||||+++|+|+++   |++|.+...+..   .+....
T Consensus         2 ~lev~~ls~~y~~---~--vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~---p~~G~I~~~g~~i~~~~~~i~   73 (200)
T d1sgwa_           2 KLEIRDLSVGYDK---P--VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKIF   73 (200)
T ss_dssp             EEEEEEEEEESSS---E--EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGEE
T ss_pred             EEEEEEEEEEECC---E--EEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC---CCCCEEEECCEEHHHHCCCEE
T ss_conf             5999989999399---2--8842088985998999999999719999999966205---677889999896267367089


Q ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             9706778777886684666999999749999
Q 029679          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGGEV  184 (189)
Q Consensus       154 vi~~~~~~l~~~~ltv~enl~~~~~~~g~~~  184 (189)
                      +++++ ...+ ..+++.+++.......+...
T Consensus        74 ~~~~~-~~~~-~~~t~~~~l~~~~~~~~~~~  102 (200)
T d1sgwa_          74 FLPEE-IIVP-RKISVEDYLKAVASLYGVKV  102 (200)
T ss_dssp             EECSS-CCCC-TTSBHHHHHHHHHHHTTCCC
T ss_pred             EEEEC-CCCC-CCCCHHHHHHHHHHHCCCCC
T ss_conf             99501-3578-88289999999997548863

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=5e-21  Score=122.28  Aligned_cols=91  Identities=18%  Similarity=0.220  Sum_probs=72.2

Q ss_pred             EEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCC--------C
Q ss_conf             99964389837544011021162168549949999869999576999999974132589950231699999--------8
Q 029679           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P  149 (189)
Q Consensus        78 i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~~--------~  149 (189)
                      |+++|+++.|+...+  .+|+++||++++|+++||+|+||||||||+++|+|+++   |++|.+..++...        +
T Consensus         2 I~~~nvsf~Y~~~~~--~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~lr   76 (241)
T d2pmka1           2 ITFRNIRFRYKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPNWLR   76 (241)
T ss_dssp             EEEEEEEEESSTTSC--EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHHH
T ss_pred             EEEEEEEEEECCCCC--CEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC---CCCCEEEECCEEECCCCHHHHH
T ss_conf             299999999089996--03742489984999999999999989999999973578---8888999999994400246553


Q ss_pred             CEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf             748997067787778866846669999
Q 029679          150 DVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       150 ~v~~vi~~~~~~l~~~~ltv~enl~~~  176 (189)
                      +...+++|+. .+|.  .++.+|+.+.
T Consensus        77 ~~i~~v~Q~~-~lf~--~Ti~eNi~~~  100 (241)
T d2pmka1          77 RQVGVVLQDN-VLLN--RSIIDNISLA  100 (241)
T ss_dssp             HHEEEECSSC-CCTT--SBHHHHHCTT
T ss_pred             CEEEEEECCC-CCCC--CCCCCCCCCC
T ss_conf             5288982446-5578--4000352235

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.81  E-value=1.1e-20  Score=120.52  Aligned_cols=92  Identities=17%  Similarity=0.215  Sum_probs=71.5

Q ss_pred             EEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCC--------
Q ss_conf             499964389837544011021162168549949999869999576999999974132589950231699999--------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------  148 (189)
Q Consensus        77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~~--------  148 (189)
                      -|+++|+++.|+..  ...+|+++||++++|+++||+|+||||||||+++|+|++.   |++|++...+...        
T Consensus        13 ~I~~~nvsf~Y~~~--~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~   87 (253)
T d3b60a1          13 DLEFRNVTFTYPGR--EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLASL   87 (253)
T ss_dssp             CEEEEEEEECSSSS--SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHHH
T ss_pred             EEEEEEEEEEECCC--CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC---CCCCEEEECCCCCCHHHHHHH
T ss_conf             79999889992999--9763533289985999999999999859999999862168---884689878801211106654


Q ss_pred             CCEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf             8748997067787778866846669999
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~v~~vi~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++...+++|+ ..++.  .++.+|+.++
T Consensus        88 r~~i~~v~Q~-~~l~~--~ti~~n~~~~  112 (253)
T d3b60a1          88 RNQVALVSQN-VHLFN--DTVANNIAYA  112 (253)
T ss_dssp             HHTEEEECSS-CCCCS--SBHHHHHHTT
T ss_pred             HHEEEEEEEC-CCCCC--CCHHHHHHHC
T ss_conf             2068799502-54478--6202433205

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.80  E-value=9.1e-21  Score=120.98  Aligned_cols=92  Identities=14%  Similarity=0.105  Sum_probs=72.9

Q ss_pred             EEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCC--------
Q ss_conf             499964389837544011021162168549949999869999576999999974132589950231699999--------
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------  148 (189)
Q Consensus        77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~~--------  148 (189)
                      -|+++|+++.|+...+  .+++++||++++|++++|+|+||||||||+++|+|+++   |++|.+...+...        
T Consensus        16 ~I~~~nvsf~Y~~~~~--~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~l   90 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEA--PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL   90 (255)
T ss_dssp             CEEEEEEEECSCSSSC--CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred             EEEEEEEEEEECCCCC--CCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC---CCCCCCCCCCEECCCCCHHHH
T ss_conf             7999988999599997--60644389983998999988999809999999971278---630001539987530788886


Q ss_pred             CCEEEEEECCCCCCCCCCCCHHHHHHHH
Q ss_conf             8748997067787778866846669999
Q 029679          149 PDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (189)
Q Consensus       149 ~~v~~vi~~~~~~l~~~~ltv~enl~~~  176 (189)
                      ++...+++|+ ..+|.  .++++|+.++
T Consensus        91 r~~i~~v~Q~-~~lf~--~Ti~eNi~~g  115 (255)
T d2hyda1          91 RNQIGLVQQD-NILFS--DTVKENILLG  115 (255)
T ss_dssp             HHTEEEECSS-CCCCS--SBHHHHHGGG
T ss_pred             HHEEEEEECC-CCCCC--CCHHHHHHCC
T ss_conf             3414565101-56899--8799998515

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.78  E-value=7.2e-20  Score=116.46  Aligned_cols=88  Identities=15%  Similarity=0.233  Sum_probs=68.4

Q ss_pred             EEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCC------CCC
Q ss_conf             49996438983754401102116216854994999986999957699999997413258995023169999------987
Q 029679           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPD  150 (189)
Q Consensus        77 ~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~------~~~  150 (189)
                      .+++ ++.+.|+..    ..  |+||++. +++++|+||||||||||+++|+|+++   |++|++...+..      .++
T Consensus         2 ~l~v-~~~k~~g~~----~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~r   70 (240)
T d2onka1           2 FLKV-RAEKRLGNF----RL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR   70 (240)
T ss_dssp             CEEE-EEEEEETTE----EE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred             EEEE-EEEEEECCE----EE--EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCC---CCCEEEEECCEECCCCCHHHC
T ss_conf             7999-999998999----99--9999749-97999997999809999999973999---896289999999886998992


Q ss_pred             EEEEEECCCCCCCCCCCCHHHHHHHHH
Q ss_conf             489970677877788668466699999
Q 029679          151 VATVLPMDGFHLYLSQLDAMEDPKEAH  177 (189)
Q Consensus       151 v~~vi~~~~~~l~~~~ltv~enl~~~~  177 (189)
                      ..++++|+ ..+++. ++|.||+++++
T Consensus        71 ~ig~v~Q~-~~l~~~-ltV~enl~~~l   95 (240)
T d2onka1          71 GIGFVPQD-YALFPH-LSVYRNIAYGL   95 (240)
T ss_dssp             CCBCCCSS-CCCCTT-SCHHHHHHTTC
T ss_pred             CCEEECCC-HHHCCC-CHHHHHHHHHH
T ss_conf             85225231-443522-01557666532

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.6e-17  Score=104.68  Aligned_cols=70  Identities=11%  Similarity=0.114  Sum_probs=57.0

Q ss_pred             CCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf             21162168549949999869999576999999974132589950231699999874899706778777886684666999
Q 029679           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus        96 ~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~~~~v~~vi~~~~~~l~~~~ltv~enl~~  175 (189)
                      +|+|+||++++|+++||+|+||||||||+++|+|+++   |++|.+...+     ...+++|+ ..+++  .++.+|+.+
T Consensus        51 vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g-----~i~~v~Q~-~~l~~--~tv~eni~~  119 (281)
T d1r0wa_          51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE---ASEGIIKHSG-----RVSFCSQF-SWIMP--GTIKENIIF  119 (281)
T ss_dssp             EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEECCS-----CEEEECSS-CCCCS--EEHHHHHTT
T ss_pred             EEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC---CCCCEEEECC-----EEEEEECC-CCCCC--CEEECCCCC
T ss_conf             7737599985999999998999829999999957974---7882899999-----99998164-30267--603214203


Q ss_pred             H
Q ss_conf             9
Q 029679          176 A  176 (189)
Q Consensus       176 ~  176 (189)
                      +
T Consensus       120 ~  120 (281)
T d1r0wa_         120 G  120 (281)
T ss_dssp             T
T ss_pred             C
T ss_conf             3

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=9.3e-17  Score=100.79  Aligned_cols=86  Identities=22%  Similarity=0.156  Sum_probs=60.3

Q ss_pred             CEEEEEEEEEECCCCCEEECCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEECCCCCC--C-----
Q ss_conf             749996438983754401102116216854994999986999957699999997413258995023169999--9-----
Q 029679           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--P-----  148 (189)
Q Consensus        76 ~~i~~~~l~~~y~~~~~~~~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i~~~~~~--~-----  148 (189)
                      .+++++++++.|        +++++||++++||++||+|+||||||||+++|+|+.    +++|++...+..  .     
T Consensus         2 ~il~~~dv~~~~--------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~----~~~G~I~~~g~~i~~~~~~~   69 (231)
T d1l7vc_           2 IVMQLQDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGKGSIQFAGQPLEAWSATK   69 (231)
T ss_dssp             EEEEEEEECCTT--------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC----CCSSEEEESSSBGGGSCHHH
T ss_pred             EEEEEECCCCCC--------EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC----CCCEEEEECCEECCCCCHHH
T ss_conf             599998741571--------555888899489899999899980999999994887----99559999999998699899


Q ss_pred             -CCEEEEEECCCCCCCCCCCCHHHHHHH
Q ss_conf             -874899706778777886684666999
Q 029679          149 -PDVATVLPMDGFHLYLSQLDAMEDPKE  175 (189)
Q Consensus       149 -~~v~~vi~~~~~~l~~~~ltv~enl~~  175 (189)
                       .....+++++....+.  .++.+++.+
T Consensus        70 ~~~~~~~~~~~~~~~~~--~~v~~~~~~   95 (231)
T d1l7vc_          70 LALHRAYLSQQQTPPFA--TPVWHYLTL   95 (231)
T ss_dssp             HHHHEEEECSCCCCCSS--CBHHHHHHH
T ss_pred             HHHHCEEEECCCCCCCC--CCHHHHHHH
T ss_conf             98640245121357744--209887641

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.65  E-value=6.9e-09  Score=61.13  Aligned_cols=30  Identities=30%  Similarity=0.568  Sum_probs=25.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             999986999957699999997413258995023
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i  141 (189)
                      .++|+|+||||||||+++|+|.+.   ++.|.+
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~---~~~g~~   31 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLG---KRAIGF   31 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG---GGEEEE
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCC---CCCCEE
T ss_conf             899998999389999999981488---886469

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.09  E-value=1.1e-06  Score=50.05  Aligned_cols=28  Identities=21%  Similarity=0.269  Sum_probs=25.5

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4994999986999957699999997413
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+|.++-|+|.+||||||+++.|+..+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9976999889999999999999999986

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=3e-06  Score=47.87  Aligned_cols=25  Identities=32%  Similarity=0.409  Sum_probs=23.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      -++||.|++||||||+++.|..++.
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             8999968999987689999999973

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.01  E-value=1.4e-06  Score=49.45  Aligned_cols=27  Identities=37%  Similarity=0.514  Sum_probs=24.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             994999986999957699999997413
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .|.++.|.|++||||||+++.|+..+.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg   29 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPG   29 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             985999988999988999999999959

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.99  E-value=2.1e-06  Score=48.59  Aligned_cols=26  Identities=38%  Similarity=0.562  Sum_probs=23.6

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             94999986999957699999997413
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      |.++.|+|||||||||+++.|....+
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             74999989999999999999984589

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=2.3e-06  Score=48.43  Aligned_cols=28  Identities=39%  Similarity=0.617  Sum_probs=25.2

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4994999986999957699999997413
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +.+.++.|.|++||||||+++.|+..+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             9871899989999898999999999869

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=2.6e-06  Score=48.16  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=21.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +++|+|.+|||||||++.|+..+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             899991899989999999999999

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.93  E-value=2.6e-06  Score=48.15  Aligned_cols=29  Identities=24%  Similarity=0.493  Sum_probs=23.9

Q ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             54994999986999957699999997413
Q 029679          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       104 i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      -...-++||.|++|||||||++.|...+.
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             79988999789887899999999999836

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2.2e-06  Score=48.53  Aligned_cols=27  Identities=30%  Similarity=0.345  Sum_probs=24.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             994999986999957699999997413
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +|.++-|+|.+||||||+++.|+..+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             996999889999999999999999997

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.87  E-value=3.6e-06  Score=47.46  Aligned_cols=27  Identities=30%  Similarity=0.432  Sum_probs=24.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             994999986999957699999997413
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +|.+.+++|+||+|||||++.|.+-..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~  120 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLK  120 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHCCHHH
T ss_conf             698089978898778888773053555

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.87  E-value=5.4e-06  Score=46.57  Aligned_cols=27  Identities=22%  Similarity=0.297  Sum_probs=24.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             994999986999957699999997413
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ...++.|.|++||||||+++.|+..++
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             985999989999998999999999728

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=5.2e-06  Score=46.67  Aligned_cols=25  Identities=28%  Similarity=0.672  Sum_probs=22.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      -++||.|++||||||+++.|...+.
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             8999989997879999999999964

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=1.2e-05  Score=44.81  Aligned_cols=24  Identities=25%  Similarity=0.528  Sum_probs=20.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             499998699995769999999741
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      -++||.|+.|||||||++.|.-.+
T Consensus        28 ~iIGi~G~qGSGKSTl~~~l~~~L   51 (286)
T d1odfa_          28 LFIFFSGPQGSGKSFTSIQIYNHL   51 (286)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             899837998788999999999999

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=5.6e-06  Score=46.50  Aligned_cols=27  Identities=26%  Similarity=0.427  Sum_probs=23.9

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             994999986999957699999997413
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +|.++.|+||||+||+||.+.|....+
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             980999999999999999999986398

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.81  E-value=8.4e-06  Score=45.60  Aligned_cols=30  Identities=20%  Similarity=0.385  Sum_probs=24.1

Q ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             168549949999869999576999999974
Q 029679          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       101 sl~i~~g~~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .+++..+.+..|+|+|||||||++.+|.-.
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~~~   48 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMMDAISFV   48 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEECCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             975899998999999999889999999998

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.81  E-value=5.9e-06  Score=46.37  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=21.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+++|+|.+|||||||+.-|+..+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             0999980999989999999999998

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.79  E-value=6.3e-06  Score=46.25  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=23.1

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             94999986999957699999997413
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      -..++|.|++|+|||||++.|+..++
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             32899989999989999999999849

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.79  E-value=8.4e-06  Score=45.60  Aligned_cols=30  Identities=20%  Similarity=0.449  Sum_probs=23.7

Q ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             6854994999986999957699999997413
Q 029679          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       102 l~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +.+.++ +..|+|+|||||||++.+|.-++.
T Consensus        20 i~f~~~-lnvlvG~NgsGKS~iL~Ai~~~lg   49 (308)
T d1e69a_          20 IGFSDR-VTAIVGPNGSGKSNIIDAIKWVFG   49 (308)
T ss_dssp             EECCSS-EEEEECCTTTCSTHHHHHHHHTSC
T ss_pred             EECCCC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             967998-199999999848999999999847

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.76  E-value=1e-05  Score=45.20  Aligned_cols=28  Identities=21%  Similarity=0.464  Sum_probs=24.7

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4994999986999957699999997413
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +++-.+.|.|++||||||+++.|+..++
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf             9988899982899988999999999858

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=1e-05  Score=45.19  Aligned_cols=25  Identities=40%  Similarity=0.680  Sum_probs=22.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ..+.|+|++||||||+++.|+-.+.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             7499989999999999999999969

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=9.5e-06  Score=45.33  Aligned_cols=28  Identities=29%  Similarity=0.508  Sum_probs=24.6

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4994999986999957699999997413
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ++-.++.|+|++||||||+++.|+..++
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             9972899989999998999999999859

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.68  E-value=1.3e-05  Score=44.69  Aligned_cols=25  Identities=28%  Similarity=0.586  Sum_probs=22.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .++.|.|++||||||+++.|+..++
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             0899989999998999999999809

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.1e-05  Score=45.03  Aligned_cols=25  Identities=40%  Similarity=0.643  Sum_probs=22.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ..+.|.|++|+|||||++.++..+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             6999988999719999999999999

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.66  E-value=1.6e-05  Score=44.24  Aligned_cols=26  Identities=23%  Similarity=0.483  Sum_probs=23.1

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             94999986999957699999997413
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ..+++|.|++||||||+++.|+..++
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             98899989999898999999999998

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.66  E-value=1.2e-05  Score=44.83  Aligned_cols=24  Identities=38%  Similarity=0.639  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+.|.|++||||||+++.|+.-+.
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             798989999998999999999979

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.65  E-value=1.6e-05  Score=44.23  Aligned_cols=25  Identities=44%  Similarity=0.599  Sum_probs=20.3

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             9499998699995769999999741
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      ..++.|.|++||||||+++.|..-.
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             8799998999999999999999957

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.63  E-value=1.5e-05  Score=44.32  Aligned_cols=29  Identities=28%  Similarity=0.517  Sum_probs=24.1

Q ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             54994999986999957699999997413
Q 029679          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       104 i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ......+-|.||+|||||||++.|++-+.
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             89997999889799889999999999865

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.63  E-value=7e-06  Score=46.00  Aligned_cols=33  Identities=21%  Similarity=0.416  Sum_probs=25.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEE
Q ss_conf             499998699995769999999741325899502
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~  140 (189)
                      -+++|-||+||||||.++.|+.-++-.+.+.|.
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg~~~istGd   36 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA   36 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCCEECHHH
T ss_conf             599978999879899999999996994787799

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.62  E-value=3.5e-06  Score=47.50  Aligned_cols=27  Identities=26%  Similarity=0.426  Sum_probs=24.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             994999986999957699999997413
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +|.+..++|+||+|||||++.|.+-..
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~  122 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELG  122 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHCCHHH
T ss_conf             356499987787348789875151767

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.61  E-value=2.2e-05  Score=43.54  Aligned_cols=28  Identities=36%  Similarity=0.494  Sum_probs=23.9

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4994999986999957699999997413
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ++|-.+.|+|++||||||+++.|+.-++
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~g   28 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNFC   28 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             9963899989999988999999999869

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=9.2e-07  Score=50.44  Aligned_cols=33  Identities=33%  Similarity=0.385  Sum_probs=27.1

Q ss_pred             CCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             6216854994999986999957699999997413
Q 029679           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        99 ~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +.++++.+| ++.|+|+|||||||++.+|.-.+.
T Consensus        17 ~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          17 ARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             EEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEEECCCC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             279974998-089988999987999999999966

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.61  E-value=1e-05  Score=45.20  Aligned_cols=24  Identities=29%  Similarity=0.498  Sum_probs=22.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ++||.|.|||||||+++.+...+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             999989997809999999999971

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.60  E-value=2.3e-05  Score=43.45  Aligned_cols=27  Identities=37%  Similarity=0.597  Sum_probs=23.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             994999986999957699999997413
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +..++.|+|++||||||+++.|+.-++
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             994899989999988999999999979

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.57  E-value=2.3e-05  Score=43.41  Aligned_cols=23  Identities=35%  Similarity=0.561  Sum_probs=21.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             99986999957699999997413
Q 029679          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +.|+|.+||||||+++.|+..++
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
T ss_conf             99989999988999999999839

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.53  E-value=2.9e-05  Score=42.92  Aligned_cols=26  Identities=27%  Similarity=0.520  Sum_probs=22.4

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             94999986999957699999997413
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +..+.++||+|||||.|+++|+..+.
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             86699989999888899999862132

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.53  E-value=2.7e-05  Score=43.02  Aligned_cols=25  Identities=24%  Similarity=0.566  Sum_probs=22.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      -++.++|.+|+||||+++.|+..++
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             8999989999999999999999997

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.52  E-value=2.6e-05  Score=43.12  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=21.4

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +.+.|+|++||||||+++.++..+.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             9889988999988999999999949

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.51  E-value=2.8e-05  Score=42.99  Aligned_cols=29  Identities=28%  Similarity=0.563  Sum_probs=25.5

Q ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             54994999986999957699999997413
Q 029679          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       104 i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +..+.++.|+|++||||||+++.|+.-+.
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             46782899989999987999999999869

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.50  E-value=3e-05  Score=42.80  Aligned_cols=23  Identities=35%  Similarity=0.657  Sum_probs=20.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             99986999957699999997413
Q 029679          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +.|+|.+||||||+++.++..++
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
T ss_conf             89988999988999999999849

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=4.5e-05  Score=41.92  Aligned_cols=26  Identities=15%  Similarity=0.406  Sum_probs=22.2

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             94999986999957699999997413
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ...+.|+||||+||+||++.|....+
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             77199999899999999999997097

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=3.9e-05  Score=42.26  Aligned_cols=24  Identities=42%  Similarity=0.656  Sum_probs=21.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ++.|+|++||||||.++.|+.-+.
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             999979999998999999999869

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=3.9e-05  Score=42.25  Aligned_cols=33  Identities=24%  Similarity=0.457  Sum_probs=25.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             999986999957699999997413258995023
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g~i  141 (189)
                      +++|.||+||||+|+++.|+.-++-.+...|.+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCEECHHHH
T ss_conf             899779998898999999999969908988899

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=3e-05  Score=42.79  Aligned_cols=24  Identities=33%  Similarity=0.571  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      -+.|+|||||||+||++.|+.-.+
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             699989999998999999997488

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=3.7e-05  Score=42.38  Aligned_cols=23  Identities=48%  Similarity=0.716  Sum_probs=20.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             99986999957699999997413
Q 029679          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +.|+||||+||+||++.|+...+
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
T ss_conf             99999999999999999997488

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.44  E-value=3.2e-05  Score=42.69  Aligned_cols=23  Identities=30%  Similarity=0.527  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .++|+|.+|+|||||++.|.|..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHHCCCC
T ss_conf             99998999987999999852987

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.43  E-value=4.6e-05  Score=41.90  Aligned_cols=24  Identities=42%  Similarity=0.650  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +++|+|+.|||||||++.|.....
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             899991899839999999999884

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.43  E-value=3.3e-05  Score=42.60  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+.|+|++||||||+++.|+.-++
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             999988999998999999999879

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=5.6e-05  Score=41.46  Aligned_cols=29  Identities=14%  Similarity=0.243  Sum_probs=25.7

Q ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             85499499998699995769999999741
Q 029679          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       103 ~i~~g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      -+++|+++-|.|++|+|||||+.-++.-.
T Consensus        19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          19 GIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             98599799999589999999999999999

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.40  E-value=6e-05  Score=41.32  Aligned_cols=31  Identities=29%  Similarity=0.329  Sum_probs=26.1

Q ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             1685499499998699995769999999741
Q 029679          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       101 sl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .+.-++|.++-|.|.|||||||+++.|...+
T Consensus        18 ~~~~~kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          18 ELRNQRGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             HHHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             9858998699998999999899999999887

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.39  E-value=4.3e-05  Score=42.04  Aligned_cols=23  Identities=43%  Similarity=0.609  Sum_probs=20.2

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             49999869999576999999974
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      -++||.|.+||||||+++.+.-+
T Consensus         4 ~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
T ss_conf             89999898877899999999987

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.38  E-value=5e-05  Score=41.72  Aligned_cols=25  Identities=40%  Similarity=0.546  Sum_probs=22.1

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .++.|.|.+||||||+++.|+..+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             1999989899898999999999998

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.36  E-value=6.5e-05  Score=41.14  Aligned_cols=24  Identities=42%  Similarity=0.551  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+.|+|++||||||+++.|+.-++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             899988999998999999999879

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.36  E-value=5.5e-05  Score=41.49  Aligned_cols=32  Identities=31%  Similarity=0.309  Sum_probs=24.7

Q ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             16854994999986999957699999997413
Q 029679          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       101 sl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+.-+.-.++-++|.+||||||+++.++....
T Consensus         8 ~~~~~~p~liil~G~pGsGKST~a~~l~~~~~   39 (172)
T d1yj5a2           8 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAG   39 (172)
T ss_dssp             CSSCSSCCEEEEECCTTSSHHHHHHHHTGGGT
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             55799998999989999989999999997659

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=9e-05  Score=40.42  Aligned_cols=30  Identities=30%  Similarity=0.512  Sum_probs=24.5

Q ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             854994999986999957699999997413
Q 029679          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       103 ~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+.....+-|.||+|||||++++.|+..++
T Consensus        41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf             999888678668998882289999999829

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=8.7e-05  Score=40.49  Aligned_cols=25  Identities=40%  Similarity=0.611  Sum_probs=22.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ..+-|.||+|+||||++++++..+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             4499987999988899999999987

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.33  E-value=7.5e-05  Score=40.81  Aligned_cols=24  Identities=42%  Similarity=0.613  Sum_probs=21.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+.|+|++||||||+++.|+.-++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             899988999987999999999879

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.32  E-value=6.4e-05  Score=41.18  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=21.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      +++|+|.+|+|||||++.++|-.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999999999999996888

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=6.9e-05  Score=40.99  Aligned_cols=28  Identities=32%  Similarity=0.433  Sum_probs=23.8

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4994999986999957699999997413
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+.-++||.|++|+|||||+..++..+.
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9832897438999989999999999997

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.32  E-value=6.2e-05  Score=41.24  Aligned_cols=24  Identities=38%  Similarity=0.577  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .++|+|.+|+|||||++.|+|...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~   25 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKK   25 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             899999999989999999967775

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=5.6e-05  Score=41.43  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      -++|+|.+|+|||||++.|.|..
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             79998999997899999995888

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=7.6e-05  Score=40.79  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .++|+|++++|||||++.|.+-.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999988999999996799

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.29  E-value=5.5e-05  Score=41.48  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .++|+|.+++|||||++.|.|-.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89999999988999999996898

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=7.3e-05  Score=40.89  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      +++|+|.+++|||||++.|.|-.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~   29 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQK   29 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999799998999999995898

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=9.7e-05  Score=40.25  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=25.1

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4994999986999957699999997413
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ++|.+++|-|..||||||+++.|..-+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9805999989988899999999999998

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.27  E-value=0.00011  Score=39.95  Aligned_cols=32  Identities=31%  Similarity=0.384  Sum_probs=28.7

Q ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             16854994999986999957699999997413
Q 029679          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       101 sl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      --.++++..+.+.||+|+|||++++.|++.+.
T Consensus       148 ~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         148 VYNIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             HHCCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             82899767699989999888999999999859

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=8.1e-05  Score=40.65  Aligned_cols=26  Identities=38%  Similarity=0.456  Sum_probs=22.6

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             94999986999957699999997413
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      |-.++++|++++|||||++.|+|...
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~~   26 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGREA   26 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             98999989999989999999968886

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.25  E-value=5.3e-05  Score=41.58  Aligned_cols=31  Identities=23%  Similarity=0.381  Sum_probs=26.0

Q ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             6854994999986999957699999997413
Q 029679          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       102 l~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ..+..+.-+.|.|+.||||||+++++++..+
T Consensus       161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             HHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             HHHHHCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf             9998378889994035662578999865301

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.24  E-value=9.5e-05  Score=40.30  Aligned_cols=24  Identities=50%  Similarity=0.750  Sum_probs=21.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+-+.||+|+||||++++++.-+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             489879999738899999985038

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.24  E-value=8.5e-05  Score=40.55  Aligned_cols=26  Identities=23%  Similarity=0.563  Sum_probs=22.4

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             94999986999957699999997413
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .-.+.|+|++||||||+++.|+.-++
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~g   31 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHFE   31 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             21699988999987999999999979

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.24  E-value=8.1e-05  Score=40.65  Aligned_cols=25  Identities=20%  Similarity=0.290  Sum_probs=21.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      -.+.|+|.+|+|||||++.|.|-..
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg~~~   57 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIGERV   57 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             4899989999869999999858984

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.24  E-value=9.1e-05  Score=40.39  Aligned_cols=25  Identities=32%  Similarity=0.494  Sum_probs=21.7

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             9499998699995769999999741
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      +-.++|+|.+|+|||||++.++|-.
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             8889999999999999999997787

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.23  E-value=0.0001  Score=40.16  Aligned_cols=24  Identities=42%  Similarity=0.681  Sum_probs=21.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+-+.||+|+||||+++++++...
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             389889799878889999999849

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.23  E-value=3.6e-05  Score=42.40  Aligned_cols=23  Identities=48%  Similarity=0.540  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      -+||+|++++|||||++.|+|-.
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~   25 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAK   25 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             69998999987999999996899

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.22  E-value=6.9e-05  Score=40.99  Aligned_cols=27  Identities=26%  Similarity=0.289  Sum_probs=23.3

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             994999986999957699999997413
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +.-+++|-|..||||||+++.|...++
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             861999889999888999999998707

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.21  E-value=9.5e-05  Score=40.30  Aligned_cols=23  Identities=43%  Similarity=0.580  Sum_probs=20.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             49999869999576999999974
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      -++||.|..||||||+++++..+
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
T ss_conf             89998888878899999999987

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.20  E-value=0.00011  Score=39.90  Aligned_cols=24  Identities=46%  Similarity=0.739  Sum_probs=21.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+.|+|++||||||+++.|+.-++
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             899988999997999999999989

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.20  E-value=0.00012  Score=39.87  Aligned_cols=25  Identities=28%  Similarity=0.549  Sum_probs=22.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .-+-++||+|||||-|+|.|+++++
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             6479989999889999999998738

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.20  E-value=0.00011  Score=39.89  Aligned_cols=25  Identities=44%  Similarity=0.648  Sum_probs=22.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .-+-|.||+|||||++++.|+...+
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf             0799889699988999999862010

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.19  E-value=0.0001  Score=40.16  Aligned_cols=24  Identities=33%  Similarity=0.411  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+.|+|++||||||.++.|+-.++
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             899987999998999999999869

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=0.00011  Score=39.90  Aligned_cols=30  Identities=30%  Similarity=0.491  Sum_probs=25.2

Q ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             854994999986999957699999997413
Q 029679          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       103 ~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+.....+-|.||+|+|||+|++.+++..+
T Consensus        37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf             999887578878998763047788787718

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00015  Score=39.36  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=24.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             994999986999957699999997413
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +|.+++|-|..||||||+++.|...+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             987899989988879999999999999

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=6.3e-05  Score=41.19  Aligned_cols=27  Identities=22%  Similarity=0.242  Sum_probs=24.1

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             994999986999957699999997413
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ++.+++|-|..||||||+++.|+..+.
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             998899987888779999999999973

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.16  E-value=0.00012  Score=39.75  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .++|+|.+|+|||||++.+.+-.
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999989999999996798

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00016  Score=39.18  Aligned_cols=28  Identities=18%  Similarity=0.215  Sum_probs=25.1

Q ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             8549949999869999576999999974
Q 029679          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       103 ~i~~g~~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      -+++|.++-|.|++|+|||+++..++..
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             9768979999889988788999999999

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.00012  Score=39.81  Aligned_cols=27  Identities=30%  Similarity=0.319  Sum_probs=23.9

Q ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             854994999986999957699999997
Q 029679          103 NVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus       103 ~i~~g~~~~ivG~sGsGKSTL~~~i~g  129 (189)
                      -+++|.++-|.|++|+|||||+.-++-
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             986996999983899988999999999

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.13  E-value=0.00018  Score=38.94  Aligned_cols=27  Identities=15%  Similarity=0.302  Sum_probs=24.6

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             994999986999957699999997413
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +|.+++|-|..||||||+++.|...+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             768999989988869999999999997

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.13  E-value=0.00015  Score=39.33  Aligned_cols=24  Identities=42%  Similarity=0.675  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+-|.||+|+||||++++++..+.
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             699978999748799999999987

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.11  E-value=5.8e-05  Score=41.38  Aligned_cols=23  Identities=52%  Similarity=0.715  Sum_probs=20.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             99986999957699999997413
Q 029679          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +||+|.+++|||||++.|+|...
T Consensus         4 VaivG~~nvGKSTLin~L~~~~~   26 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAHP   26 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSCC
T ss_pred             EEEECCCCCCHHHHHHHHHCCCC
T ss_conf             99989999989999999968997

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00017  Score=39.06  Aligned_cols=23  Identities=43%  Similarity=0.530  Sum_probs=20.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             49999869999576999999974
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      -++||.|..||||||.++.+..+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
T ss_conf             79997898868899999999987

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.10  E-value=0.00017  Score=39.03  Aligned_cols=25  Identities=44%  Similarity=0.626  Sum_probs=22.2

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .-+-+.||+|+|||++++.|+...+
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             6488766898883599999998739

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00017  Score=39.07  Aligned_cols=24  Identities=46%  Similarity=0.725  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+.|+|+.||||||+++.|+.-++
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             999989999998999999999969

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.08  E-value=0.00016  Score=39.13  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .+.|+|++|+|||||++.+.+-.
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89999999989899999996598

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.05  E-value=0.00019  Score=38.73  Aligned_cols=26  Identities=27%  Similarity=0.469  Sum_probs=23.2

Q ss_pred             EECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             85499499998699995769999999
Q 029679          103 NVNVKHIVGLAGPPGAGKSTLAAEVV  128 (189)
Q Consensus       103 ~i~~g~~~~ivG~sGsGKSTL~~~i~  128 (189)
                      -+++|.++-|.|++|+|||||+.-++
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             95588799998589898899999999

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.03  E-value=0.00022  Score=38.42  Aligned_cols=29  Identities=24%  Similarity=0.361  Sum_probs=25.0

Q ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             85499499998699995769999999741
Q 029679          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       103 ~i~~g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      -+++|.++-|.|++|+|||+|+.-++--.
T Consensus        22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          22 GFFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             98698499999189999999999999999

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.03  E-value=0.00021  Score=38.55  Aligned_cols=26  Identities=19%  Similarity=0.199  Sum_probs=22.2

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99499998699995769999999741
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .+.++.|.|++|+|||||++.++.-.
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             59879998699982999999999977

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.01  E-value=0.00014  Score=39.39  Aligned_cols=35  Identities=14%  Similarity=0.141  Sum_probs=28.2

Q ss_pred             CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             02116216854994999986999957699999997
Q 029679           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus        95 ~~l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~g  129 (189)
                      ..|+.+-.-+.+|+++.|.|++|+|||||+.-++-
T Consensus        23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf             66888746978980899994799979999999997

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.01  E-value=0.00012  Score=39.80  Aligned_cols=25  Identities=24%  Similarity=0.178  Sum_probs=21.0

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             9499998699995769999999741
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .-.++|+|.+|+|||||++.+.+-.
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             7789999999989899999996788

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.00  E-value=0.00028  Score=37.90  Aligned_cols=27  Identities=33%  Similarity=0.457  Sum_probs=23.0

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             499499998699995769999999741
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      ...-.+||.|+.|+|||||+..+...+
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             981598611799888999999999987

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.00  E-value=0.00021  Score=38.57  Aligned_cols=23  Identities=26%  Similarity=0.205  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .++|+|++++|||||++.+.+-.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89999999999999999995899

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00027  Score=37.97  Aligned_cols=31  Identities=23%  Similarity=0.316  Sum_probs=24.1

Q ss_pred             EEEECC-CCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             168549-9499998699995769999999741
Q 029679          101 ASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       101 sl~i~~-g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      ++.+.. +.++-|.|+|.+||||++|.++-..
T Consensus        34 di~l~~~~~~~iiTGpN~~GKSt~lk~i~l~~   65 (234)
T d1wb9a2          34 PLNLSPQRRMLIITGPNMGGKSTYMRQTALIA   65 (234)
T ss_dssp             EEEECSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf             57988995399995467313689999879999

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.99  E-value=0.00025  Score=38.19  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=20.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             499998699995769999999741
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      ..++|+|++|+|||||++.+.+-.
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             989999999989899999998099

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=0.00025  Score=38.21  Aligned_cols=22  Identities=27%  Similarity=0.655  Sum_probs=20.2

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             9998699995769999999741
Q 029679          110 VGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      +-|.||+|+||||++++++.-+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9998999998499999999997

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.96  E-value=0.0003  Score=37.79  Aligned_cols=31  Identities=32%  Similarity=0.423  Sum_probs=27.4

Q ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             6854994999986999957699999997413
Q 029679          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       102 l~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ...++|.++.|.|+=||||||+.|.++.-+.
T Consensus        28 ~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             HCCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             1579982999966877658899999876422

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.95  E-value=0.00033  Score=37.59  Aligned_cols=25  Identities=36%  Similarity=0.590  Sum_probs=22.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .-+-|.||+|+|||++++.++....
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf             6468766998883089999998748

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.94  E-value=0.00028  Score=37.91  Aligned_cols=29  Identities=17%  Similarity=0.383  Sum_probs=25.3

Q ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             85499499998699995769999999741
Q 029679          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       103 ~i~~g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      -+++|+++-|.|++|+|||+++.-++--.
T Consensus        30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             86288599999179999899999999999

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.92  E-value=0.00032  Score=37.67  Aligned_cols=26  Identities=15%  Similarity=0.396  Sum_probs=22.8

Q ss_pred             EECCCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             85499499998699995769999999
Q 029679          103 NVNVKHIVGLAGPPGAGKSTLAAEVV  128 (189)
Q Consensus       103 ~i~~g~~~~ivG~sGsGKSTL~~~i~  128 (189)
                      -+++|+++-|.|++|+|||+|+.-++
T Consensus        22 Gi~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          22 GLPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf             99698399999479999999999999

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.92  E-value=0.00041  Score=37.09  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=23.0

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             94999986999957699999997413
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ...+.|.|++|+||||+++.++..+.
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             88168889899989999999999975

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=96.90  E-value=0.00041  Score=37.10  Aligned_cols=28  Identities=29%  Similarity=0.337  Sum_probs=22.0

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4994999986999957699999997413
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +++.++.++|++|+||||.+-=|+....
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9977999989999988999999999999

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00044  Score=36.94  Aligned_cols=27  Identities=22%  Similarity=0.444  Sum_probs=23.5

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             994999986999957699999997413
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +...+.++||+|+|||.|++.|+..+.
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf             765899977875006999999986336

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.00035  Score=37.44  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             99986999957699999997413
Q 029679          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +-|.||+|+||||++++++.-+.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHHHH
T ss_conf             99988999870546999999972

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.84  E-value=0.00048  Score=36.77  Aligned_cols=33  Identities=27%  Similarity=0.332  Sum_probs=24.8

Q ss_pred             CCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             1162168549949999869999576999999974
Q 029679           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus        97 l~~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      +|..-+.+ .|.-+.|.|+||+||||++..+...
T Consensus         6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2           6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf             78999999-9999999818999989999999985

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00036  Score=37.38  Aligned_cols=34  Identities=29%  Similarity=0.405  Sum_probs=30.7

Q ss_pred             CCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             6216854994999986999957699999997413
Q 029679           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus        99 ~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      |.=+.+-+|...+|+|++|+|||||+..|+.-..
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             4125645787556867999887899999999775

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.81  E-value=1e-04  Score=40.19  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=21.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .++|+|.+++|||||++.|+|-..
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~~   25 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNEDR   25 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHTB
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             899999999999999999958996

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.81  E-value=0.00046  Score=36.85  Aligned_cols=32  Identities=19%  Similarity=0.334  Sum_probs=22.8

Q ss_pred             CEEEECCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             21685499499998699995769999999741
Q 029679          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       100 vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      +++.-.+-.++.++|++|+||||.+-=|+-.+
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             76799999899998999998899999999999

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=96.81  E-value=0.00019  Score=38.80  Aligned_cols=26  Identities=27%  Similarity=0.213  Sum_probs=23.2

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             94999986999957699999997413
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +.-+-|+|+.|+|||||+|.++++++
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             97089988998529999999987379

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00011  Score=40.03  Aligned_cols=26  Identities=27%  Similarity=0.302  Sum_probs=22.1

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99499998699995769999999741
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      ..-.++|+|.+++|||||++.|.+..
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             69789998899998999999985898

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.79  E-value=0.00029  Score=37.86  Aligned_cols=23  Identities=22%  Similarity=0.186  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .+.++|++|+|||||++.+.+-.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHCCCC
T ss_conf             99999999989999999980899

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00056  Score=36.40  Aligned_cols=31  Identities=29%  Similarity=0.531  Sum_probs=26.6

Q ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             6854994999986999957699999997413
Q 029679          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       102 l~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      =-++.|.++-|.|++|+|||||+-.++.-..
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q   79 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ   79 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             9966735899805777478999999999987

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00076  Score=35.76  Aligned_cols=31  Identities=19%  Similarity=0.383  Sum_probs=22.2

Q ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             6854994999986999957699999997413
Q 029679          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       102 l~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ++-..-.++.++|++|+||||.+-=|+..+.
T Consensus         4 ~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           4 VEGKAPFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             CCSCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             7899997999989999998999999999999

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.74  E-value=0.00047  Score=36.80  Aligned_cols=27  Identities=26%  Similarity=0.284  Sum_probs=22.3

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             499499998699995769999999741
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      ++.-.+.|+|.+|||||||++.+.+-.
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~   39 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNE   39 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             985799999999989899999996688

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.72  E-value=0.0004  Score=37.13  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      -+||+|...+|||||++.|++..
T Consensus         7 nIaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHC
T ss_conf             99999077870999999999743

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.71  E-value=0.00056  Score=36.43  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      ++||+|...+|||||++.|.+..
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHHHC
T ss_conf             79999699854999999998236

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.71  E-value=0.00051  Score=36.60  Aligned_cols=22  Identities=32%  Similarity=0.446  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .++++|.+|+|||||++.+.+-
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999999996989999999709

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.0016  Score=34.10  Aligned_cols=27  Identities=37%  Similarity=0.512  Sum_probs=23.2

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             499499998699995769999999741
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .+|.++.|.|++|+|||||+.-|+--+
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             589589999289998999999999999

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.70  E-value=0.00034  Score=37.52  Aligned_cols=24  Identities=46%  Similarity=0.653  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ++.|.|++|+||||+++.++..+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             899678999899999999999987

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.69  E-value=0.00091  Score=35.36  Aligned_cols=31  Identities=26%  Similarity=0.256  Sum_probs=24.3

Q ss_pred             CEEEECCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             21685499499998699995769999999741
Q 029679          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       100 vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      -|+.+.. .++-|.|||.+||||++|.++-..
T Consensus        29 Ndi~~~~-~~~iiTGpN~~GKSt~lk~i~l~~   59 (224)
T d1ewqa2          29 NDLEMAH-ELVLITGPNMAGKSTFLRQTALIA   59 (224)
T ss_dssp             EEEEESS-CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CEEEECC-CEEEEECCCCCCCCHHHHHHHHHH
T ss_conf             5588478-679997887345323455658999

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.68  E-value=0.00063  Score=36.14  Aligned_cols=24  Identities=29%  Similarity=0.559  Sum_probs=21.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +++|-|.-||||||+++.|...++
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             899989987899999999999998

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.67  E-value=0.00094  Score=35.28  Aligned_cols=28  Identities=32%  Similarity=0.496  Sum_probs=24.7

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4994999986999957699999997413
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+.-++-+.|+.||||||++..+...++
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             HHHCEEEEECCCCCCCCHHHHHHHHHHC
T ss_conf             4105489876787774477999866625

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.66  E-value=0.00056  Score=36.42  Aligned_cols=22  Identities=14%  Similarity=0.234  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .+.++|.+|+|||||++.+.+-
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999999991989999999739

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00051  Score=36.63  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .++++|++|+|||||++.+.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999997998999999999809

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.65  E-value=0.00064  Score=36.11  Aligned_cols=30  Identities=33%  Similarity=0.265  Sum_probs=23.2

Q ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             168549949999869999576999999974
Q 029679          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       101 sl~i~~g~~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      ++-.-.|.-+.|.|+||+||||++-.+...
T Consensus         8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_           8 VLVDIYGLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf             999999999999808999989999999985

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00044  Score=36.95  Aligned_cols=22  Identities=36%  Similarity=0.569  Sum_probs=20.1

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             9998699995769999999741
Q 029679          110 VGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      +-|.|++|+||||++++++.-+
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9988999998899999999762

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.64  E-value=0.00059  Score=36.30  Aligned_cols=22  Identities=41%  Similarity=0.548  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .++++|.+|+|||||++.+.+-
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999999990989999999829

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.63  E-value=0.00061  Score=36.24  Aligned_cols=23  Identities=22%  Similarity=0.250  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .+.++|++|+|||||++.+.+-.
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~~   26 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASGQ   26 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999989899999997197

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.63  E-value=0.00075  Score=35.78  Aligned_cols=26  Identities=27%  Similarity=0.440  Sum_probs=22.1

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99499998699995769999999741
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      ...+++|+|..|.|||||++.+..-.
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             84089997799788899999999855

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.63  E-value=0.00062  Score=36.18  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .++++|.+|+|||||++-+.+-
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999999991989999999719

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.61  E-value=0.00073  Score=35.83  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=20.8

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             499998699995769999999741
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .++||.|.-||||||+++.+..-+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             899997999988999999999868

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.57  E-value=0.00064  Score=36.11  Aligned_cols=29  Identities=17%  Similarity=0.263  Sum_probs=23.0

Q ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             854994999986999957699999997413
Q 029679          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       103 ~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ..++| ++-++||+|+|||.|++.|++-..
T Consensus       120 ~~~~g-~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         120 RYASG-MVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEESE-EEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             CCCCC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             36886-388877998508899999999863

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.00067  Score=36.04  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=19.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             49999869999576999999974
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      ..++|+|.+|+|||||++.+.+-
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
T ss_conf             38999998992989999999719

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.54  E-value=0.00079  Score=35.68  Aligned_cols=23  Identities=35%  Similarity=0.676  Sum_probs=20.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             99986999957699999997413
Q 029679          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +-|.||+|+||||++++++.-+.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
T ss_conf             99988998775589999999851

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.54  E-value=0.001  Score=35.14  Aligned_cols=27  Identities=30%  Similarity=0.352  Sum_probs=20.9

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             994999986999957699999997413
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ...++.++|++|+||||.+-=|+..+.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             986899989999988999999999999

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.53  E-value=0.0009  Score=35.37  Aligned_cols=31  Identities=29%  Similarity=0.487  Sum_probs=27.2

Q ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             6854994999986999957699999997413
Q 029679          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       102 l~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      =-++.|.++-|.|++|+|||||+..++....
T Consensus        52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq   82 (268)
T d1xp8a1          52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ   82 (268)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9866754789805876522799999999997

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00078  Score=35.70  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .+.++|.+|+|||||++.+.+-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999999993999999999629

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.00072  Score=35.87  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .+.|+|.+|+|||||++-+.+-
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             8999999997999999999739

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.0008  Score=35.63  Aligned_cols=21  Identities=19%  Similarity=0.321  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q ss_conf             999986999957699999997
Q 029679          109 IVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~g  129 (189)
                      .+.++|.+|+|||||++-+.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899598999999982

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00076  Score=35.74  Aligned_cols=21  Identities=38%  Similarity=0.572  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q ss_conf             999986999957699999997
Q 029679          109 IVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~g  129 (189)
                      .++++|.+|+|||||++-+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             899999899798999999970

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.00089  Score=35.39  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .+.|+|.+|+|||||++-+.+-.
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~~   27 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC
T ss_conf             99999989939999999997199

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0008  Score=35.64  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .+.|+|.+|+|||||++.+.+-
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999999991989999999619

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00091  Score=35.36  Aligned_cols=24  Identities=42%  Similarity=0.416  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+.++|.+|+|||||++.+.+...
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~~   26 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVED   26 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             999989899399999999818856

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00089  Score=35.41  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .+.++|..|+|||||++.+.+-.
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~~   24 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYDS   24 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC
T ss_conf             89999989909899999998499

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0014  Score=34.47  Aligned_cols=20  Identities=45%  Similarity=0.529  Sum_probs=17.9

Q ss_pred             EEEECCCCCCHHHHHHHHHH
Q ss_conf             99986999957699999997
Q 029679          110 VGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~~~i~g  129 (189)
                      +.++|.+|+|||||++-+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
T ss_conf             99999999799999999984

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.41  E-value=0.0012  Score=34.69  Aligned_cols=31  Identities=23%  Similarity=0.439  Sum_probs=25.9

Q ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             6854994999986999957699999997413
Q 029679          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       102 l~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      =-++.|.++-|.|++|+|||||+..++....
T Consensus        55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q   85 (269)
T d1mo6a1          55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQ   85 (269)
T ss_dssp             SSBCSSSEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             9866633699964887488999999999875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.41  E-value=0.00091  Score=35.35  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .+.|+|.+|+|||||++.+.+-
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999999991989999999729

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.40  E-value=0.00094  Score=35.28  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .+.++|.+|+|||||++.+.+-.
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~~   26 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVEDK   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC
T ss_conf             99999999967899999998688

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.40  E-value=0.0011  Score=35.00  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .++|+|.+|+|||||++-+..-
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             8999998994999999999739

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0011  Score=34.99  Aligned_cols=21  Identities=29%  Similarity=0.300  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q ss_conf             999986999957699999997
Q 029679          109 IVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~g  129 (189)
                      .+.|+|.+|+|||||++-+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999398999999982

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.38  E-value=0.00084  Score=35.52  Aligned_cols=24  Identities=29%  Similarity=0.393  Sum_probs=21.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      -+||+|-+-+|||||+++++|...
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~~   25 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVDV   25 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC---
T ss_pred             CEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             176889999989999999978897

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.38  E-value=0.00099  Score=35.18  Aligned_cols=21  Identities=33%  Similarity=0.404  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHHHH
Q ss_conf             999869999576999999974
Q 029679          110 VGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      ++|+|..|+|||||++.+.+-
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHC
T ss_conf             999999990989999999619

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.37  E-value=0.00059  Score=36.31  Aligned_cols=24  Identities=29%  Similarity=0.344  Sum_probs=20.2

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             949999869999576999999974
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      --.++++|.+|+|||||++.+.+-
T Consensus        16 ~~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          16 EVRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf             779999999998999999999648

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0011  Score=34.92  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .+.|+|.+|+|||||++-+.+-
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999999997999999999749

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0011  Score=34.91  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .+.|+|.+|+|||||++.+.+-.
T Consensus         6 KivlvG~~~vGKTsli~~~~~~~   28 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEKK   28 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC
T ss_conf             99999999949899999997299

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.35  E-value=0.00095  Score=35.26  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .++++|.-.+|||||+++|+|..
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             EEEEEECCCCCHHHHHHHHHCCC
T ss_conf             59998189897999999996899

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0012  Score=34.76  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .+.++|.+|+|||||++.+.+-
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             8999998990889999999719

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.29  E-value=0.0013  Score=34.53  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .+.++|.+|+|||||++-+..-
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999999992989999999739

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0012  Score=34.74  Aligned_cols=23  Identities=17%  Similarity=0.187  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .+.|+|.+|+|||||++.+.+-.
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC
T ss_conf             99999989938899999997199

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0013  Score=34.56  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .+.|+|.+|+|||||++-+.+-
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999997996989999999739

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.24  E-value=0.0017  Score=33.93  Aligned_cols=30  Identities=30%  Similarity=0.303  Sum_probs=22.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf             9999869999576999999974132589950
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g  139 (189)
                      .+.|+|.+|+|||||++-+. +.....|+-|
T Consensus         4 KivllG~~~vGKTsll~r~~-f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR-IIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-HHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHH-CCCCCCCEEE
T ss_conf             99999899999899999884-6898887241

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.24  E-value=0.0011  Score=34.98  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .++++|.-.+|||||+++|+|..
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             69997689897999999996898

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.23  E-value=0.0017  Score=34.01  Aligned_cols=24  Identities=29%  Similarity=0.558  Sum_probs=21.6

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             499998699995769999999741
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      -.+||||-+.+|||||++++++-.
T Consensus        11 ~kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          11 LKTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHST
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             379997899998999999997789

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0015  Score=34.29  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .+.++|.+|+|||||++-+..-.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~~   30 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC
T ss_conf             99999999949899999998598

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.22  E-value=0.0016  Score=34.09  Aligned_cols=28  Identities=25%  Similarity=0.393  Sum_probs=20.7

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4994999986999957699999997413
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ....++.++|++|+||||.+-=|+....
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             9998999989999998999999999999

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0014  Score=34.43  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHHH
Q ss_conf             999869999576999999974
Q 029679          110 VGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      ++++|..|+|||||++-+.+-
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHC
T ss_conf             999999990999999999709

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.0016  Score=34.13  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .+.++|.+|+|||||++-+.+-
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999998995989999999709

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=96.20  E-value=0.0021  Score=33.50  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=24.8

Q ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             54994999986999957699999997413
Q 029679          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       104 i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      -.+...+-|.|+||||||+-.+.|...+.
T Consensus        83 ~~~~QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          83 SQENQCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             HCCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             08981899973898998999999999999

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0014  Score=34.45  Aligned_cols=23  Identities=43%  Similarity=0.384  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .+.++|.+|+|||||++.+.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC
T ss_conf             99999989929999999997286

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.18  E-value=0.0016  Score=34.09  Aligned_cols=23  Identities=26%  Similarity=0.315  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .++++|.+|+|||||++-+.+-.
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~~   27 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC
T ss_conf             99999999919899999997299

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.16  E-value=0.0023  Score=33.29  Aligned_cols=30  Identities=30%  Similarity=0.271  Sum_probs=23.3

Q ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             168549949999869999576999999974
Q 029679          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       101 sl~i~~g~~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      ++-.-.|.-+.|.|+||+||||++-.+...
T Consensus         9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2           9 VLVDVYGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf             999999999999808999999999999984

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0018  Score=33.91  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .+.++|.+|+|||+|++-+.+-
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999998997899999999739

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.13  E-value=0.0024  Score=33.22  Aligned_cols=28  Identities=21%  Similarity=0.401  Sum_probs=24.9

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4994999986999957699999997413
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+...+-|.|+||||||.-.+.|+..+.
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             8991699967998888999999999999

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.13  E-value=0.0018  Score=33.88  Aligned_cols=32  Identities=28%  Similarity=0.431  Sum_probs=28.8

Q ss_pred             CCEEEECCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             62168549949999869999576999999974
Q 029679           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus        99 ~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      |.-+.+-+|...+|.|.+|+|||+|+..|+.-
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEECCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             10256367887776679998989999999998

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0017  Score=33.96  Aligned_cols=21  Identities=19%  Similarity=0.221  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q ss_conf             999986999957699999997
Q 029679          109 IVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~g  129 (189)
                      .+.|+|.+|+|||||++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999899999999964

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.09  E-value=0.0022  Score=33.44  Aligned_cols=26  Identities=27%  Similarity=0.404  Sum_probs=22.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99499998699995769999999741
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      +...+.++||+|+|||.+++.|+..+
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             76699997888624899999999983

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.002  Score=33.67  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .++++|.+|+|||||++-+.+-.
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC
T ss_conf             99999989978999999997197

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.05  E-value=0.0023  Score=33.34  Aligned_cols=29  Identities=24%  Similarity=0.601  Sum_probs=23.0

Q ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             854994999986999957699999997413
Q 029679          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       103 ~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .++.+- +-++||+|+|||-|+|.|+.+..
T Consensus        65 ~~p~~n-iLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          65 ELSKSN-ILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             TCCCCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHHHHCC
T ss_conf             678753-24418998637899999986443

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.04  E-value=0.001  Score=35.08  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q ss_conf             999986999957699999997
Q 029679          109 IVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~g  129 (189)
                      .+.++|.+|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999499999999970

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0014  Score=34.37  Aligned_cols=25  Identities=24%  Similarity=0.339  Sum_probs=22.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+++|+|+-++|||||++.+.|...
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~~   57 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKKK   57 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred             EEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf             9999889999979999999809987

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0022  Score=33.44  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .+.++|.+|+|||+|++-+..-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999998998999999999709

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.98  E-value=0.0023  Score=33.34  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q ss_conf             999986999957699999997
Q 029679          109 IVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~g  129 (189)
                      .+.|+|.+|+|||||++-+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899588999999972

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0024  Score=33.20  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=22.3

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+++|=|.-||||||+++.|...+.
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             1999989988859999999999873

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0026  Score=33.05  Aligned_cols=26  Identities=35%  Similarity=0.460  Sum_probs=22.0

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             94999986999957699999997413
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ..-+.|||++|+|||++++.++..+.
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCEEECCCCCCHHHHHHHHHHHHH
T ss_conf             68967988898867799999999998

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=95.95  E-value=0.0033  Score=32.55  Aligned_cols=29  Identities=21%  Similarity=0.312  Sum_probs=25.0

Q ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             54994999986999957699999997413
Q 029679          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       104 i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      -.+...+-|.|+||||||+-.+.|+..+.
T Consensus        88 ~~~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          88 DREDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             38991799971898888999999999999

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.95  E-value=0.0022  Score=33.43  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q ss_conf             999986999957699999997
Q 029679          109 IVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~g  129 (189)
                      .+.++|.+|+|||+|++-+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999598999999972

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0025  Score=33.19  Aligned_cols=21  Identities=33%  Similarity=0.431  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q ss_conf             999986999957699999997
Q 029679          109 IVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~g  129 (189)
                      .++++|..|+|||||++-+.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999299999999971

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0022  Score=33.40  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      .+.++|.+|+|||+|++-+.+-
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999999996999999999719

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=95.94  E-value=0.0031  Score=32.68  Aligned_cols=29  Identities=21%  Similarity=0.336  Sum_probs=24.7

Q ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             54994999986999957699999997413
Q 029679          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       104 i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      -.+...+-|.|+||||||.-.+.|+..+.
T Consensus       120 ~~~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         120 DRENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             HTCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             49980799971798878999999999999

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=95.94  E-value=0.0023  Score=33.31  Aligned_cols=24  Identities=33%  Similarity=0.606  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .++|+|..|+|||||+..|...-.
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             999994889809999999999709

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.92  E-value=0.0013  Score=34.59  Aligned_cols=26  Identities=23%  Similarity=0.206  Sum_probs=20.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99499998699995769999999741
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      +.-.+.++|.+|+|||||++.+.+-.
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~~~   41 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQIGE   41 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCSE
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             66899999999998899998873387

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.83  E-value=0.0027  Score=33.01  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.3

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             99986999957699999997413
Q 029679          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +-|.|++|+|||-|+++++.-..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
T ss_conf             79988899839999999998744

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=95.79  E-value=0.0033  Score=32.55  Aligned_cols=28  Identities=21%  Similarity=0.337  Sum_probs=24.3

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4994999986999957699999997413
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+...+-|.|+||||||.-.+.|+..+.
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             8994799970899987999999999999

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.77  E-value=0.004  Score=32.10  Aligned_cols=26  Identities=31%  Similarity=0.400  Sum_probs=22.5

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             94999986999957699999997413
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      +-.+||||-+-+|||||.+.|++-..
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~   27 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGI   27 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf             83488889999988999999977997

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0038  Score=32.25  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=21.2

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ..+-|.|++|+||||++++++..+.
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             0598888998758999999999846

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0013  Score=34.63  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q ss_conf             999986999957699999997
Q 029679          109 IVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~g  129 (189)
                      .+.++|.+|+|||||++.+++
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999088999999984

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.73  E-value=0.0029  Score=32.79  Aligned_cols=22  Identities=32%  Similarity=0.385  Sum_probs=18.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHH
Q ss_conf             4999986999957699999997
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~g  129 (189)
                      -.+.|+|.+|+|||||++-+..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
T ss_conf             7799998999988999998950

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.69  E-value=0.0031  Score=32.68  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=20.0

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             499998699995769999999741
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .-++|+|..|+|||||+-.|+-..
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~   30 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYT   30 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHC
T ss_conf             299999589899899999999964

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.0056  Score=31.36  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=22.2

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             94999986999957699999997413
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ...+-+.|++|+||||+++.++..+.
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             73798889998759999999998210

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.62  E-value=0.0015  Score=34.25  Aligned_cols=24  Identities=21%  Similarity=0.176  Sum_probs=19.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             499998699995769999999741
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      -.+.++|.+|+|||||++.+.+-.
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~~~   36 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKLGQ   36 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred             EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             799999999987899999984488

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.61  E-value=0.0035  Score=32.43  Aligned_cols=25  Identities=28%  Similarity=0.360  Sum_probs=19.1

Q ss_pred             CEEEEECCCCCCHHHHHHH-HHHHHC
Q ss_conf             4999986999957699999-997413
Q 029679          108 HIVGLAGPPGAGKSTLAAE-VVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~-i~gl~~  132 (189)
                      ..+.|+|.+|+|||++++. |..+..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~   76 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLL   76 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             65899907999689999999999984

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=95.54  E-value=0.0059  Score=31.25  Aligned_cols=29  Identities=24%  Similarity=0.312  Sum_probs=24.8

Q ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             54994999986999957699999997413
Q 029679          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       104 i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      -.+...+-|.|+||||||.-.+.|...+.
T Consensus        91 ~~~~Q~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          91 DERNQSIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             08980799971799987999999999999

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.47  E-value=0.0043  Score=31.95  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=20.0

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             9998699995769999999741
Q 029679          110 VGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      +|++|--.+|||||++.|+|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCHHHHHHHHHHHH
T ss_conf             9999345884999999997034

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.46  E-value=0.0063  Score=31.14  Aligned_cols=23  Identities=26%  Similarity=0.224  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .+.|+|..|+|||||++-+..-.
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~   26 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIH   26 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC
T ss_conf             99999999988899999884089

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.44  E-value=0.0066  Score=31.02  Aligned_cols=31  Identities=23%  Similarity=0.160  Sum_probs=22.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCCCCE
Q ss_conf             9999869999576999999974132589950
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~~~~p~~g  139 (189)
                      .+.++|.+|+|||||++-+..-.....|+-|
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
T ss_conf             9999999999889999999679999981662

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.36  E-value=0.0057  Score=31.33  Aligned_cols=23  Identities=35%  Similarity=0.380  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      -++++|..++|||||+..|....
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHHHH
T ss_conf             99999478984999999999985

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.0047  Score=31.74  Aligned_cols=22  Identities=36%  Similarity=0.528  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999869999576999999974
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      ++.|.|--|||||||++-+..-
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEEECCCCCHHHHHHHHHHC
T ss_conf             8998648889999999999856

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.30  E-value=0.0083  Score=30.52  Aligned_cols=26  Identities=35%  Similarity=0.557  Sum_probs=22.0

Q ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             94999986999957699999997413
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ..-+.|+|++|.|||+++..++..+.
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             88739983587544799999999998

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.11  E-value=0.011  Score=29.88  Aligned_cols=24  Identities=29%  Similarity=0.281  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+.|=|.-|+||||+++.|...+.
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             999988866789999999999865

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.11  E-value=0.0051  Score=31.57  Aligned_cols=24  Identities=33%  Similarity=0.382  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+.|-|.-|+||||+++.+.....
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             999989867789999999999817

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.07  E-value=0.011  Score=29.96  Aligned_cols=28  Identities=7%  Similarity=0.084  Sum_probs=23.5

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4994999986999957699999997413
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+|-.+-+-|-+|+||||+++++.--+.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~   31 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFL   31 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             6516999808887788899999999998

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.04  E-value=0.0061  Score=31.18  Aligned_cols=24  Identities=33%  Similarity=0.598  Sum_probs=19.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             499998699995769999999741
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      .-..|||++|.|||+++..++..+
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEECCCCCCHHHHHHHHHHHH
T ss_conf             997687999988999999999999

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.96  E-value=0.0049  Score=31.66  Aligned_cols=32  Identities=13%  Similarity=0.157  Sum_probs=27.9

Q ss_pred             CCEEEECCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             62168549949999869999576999999974
Q 029679           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (189)
Q Consensus        99 ~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl  130 (189)
                      |.-+.+-+|..++|.|++|+|||+|+..++.-
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             ECCCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             43467667877876568888858999999975

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=94.83  E-value=0.0044  Score=31.92  Aligned_cols=33  Identities=15%  Similarity=0.139  Sum_probs=28.5

Q ss_pred             CCEEEECCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             621685499499998699995769999999741
Q 029679           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus        99 ~vsl~i~~g~~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      |.=+.+-+|...+|+|++|+|||+|+..+..-.
T Consensus        59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          59 DAMIPVGRGQRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             ECCCCCCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             501454677667600677888579999977654

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.80  E-value=0.0087  Score=30.41  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             999986999957699999997413
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+.|=|.-|+||||+++.|...+.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             999988877889999999999873

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.75  E-value=0.01  Score=30.08  Aligned_cols=30  Identities=23%  Similarity=0.390  Sum_probs=27.1

Q ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             854994999986999957699999997413
Q 029679          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       103 ~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+++.-++.+.||.++|||+++..|+.++.
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             898731899988998568999999999828

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.58  E-value=0.016  Score=29.09  Aligned_cols=30  Identities=20%  Similarity=0.451  Sum_probs=26.5

Q ss_pred             EECCCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             854994999986999957699999997413
Q 029679          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       103 ~i~~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ..++.-++.|.|+.++|||+++.+|..++.
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf             997617999985898877899999999836

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.47  E-value=0.014  Score=29.36  Aligned_cols=22  Identities=36%  Similarity=0.575  Sum_probs=19.6

Q ss_pred             EEEECCCCCCHHHHHHHHHHHH
Q ss_conf             9998699995769999999741
Q 029679          110 VGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      ++++|.-.+|||||+..|.+..
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHHH
T ss_conf             9999588980999999999999

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.39  E-value=0.012  Score=29.70  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      -++++|.-.+|||||+..|+|..
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEECCCCCHHHHHHHHHHHH
T ss_conf             89999724886999999997041

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.013  Score=29.47  Aligned_cols=20  Identities=30%  Similarity=0.483  Sum_probs=15.0

Q ss_pred             CCCCEEEEECCCCCCHHHHH
Q ss_conf             49949999869999576999
Q 029679          105 NVKHIVGLAGPPGAGKSTLA  124 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~  124 (189)
                      ..|++..+.|-||.|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEECCCCCCCCCCE
T ss_conf             88988999704779856023

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=94.01  E-value=0.015  Score=29.22  Aligned_cols=17  Identities=35%  Similarity=0.561  Sum_probs=8.0

Q ss_pred             CCEEEEECCCCCCHHHH
Q ss_conf             94999986999957699
Q 029679          107 KHIVGLAGPPGAGKSTL  123 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL  123 (189)
                      |++..+.|.||.|||||
T Consensus        14 ~~valffGLSGTGKTTL   30 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTL   30 (318)
T ss_dssp             CCEEEEEECTTSCHHHH
T ss_pred             CCEEEEECCCCCCCCCC
T ss_conf             98899973687981422

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.87  E-value=0.018  Score=28.77  Aligned_cols=19  Identities=32%  Similarity=0.494  Sum_probs=14.9

Q ss_pred             CCCEEEEECCCCCCHHHHH
Q ss_conf             9949999869999576999
Q 029679          106 VKHIVGLAGPPGAGKSTLA  124 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~  124 (189)
                      .|.+..+.|-||.|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEECCCCCCCCCCE
T ss_conf             8987999736778812051

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.81  E-value=0.027  Score=27.93  Aligned_cols=23  Identities=35%  Similarity=0.674  Sum_probs=18.4

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHH
Q ss_conf             99499998699995769999999
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVV  128 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~  128 (189)
                      .+.++.|.|+.|+||||++..+.
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCEEHHHHHH
T ss_conf             08859997689887521699999

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.70  E-value=0.024  Score=28.16  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=22.0

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             994999986999957699999997413
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ...-+-|.|+.|+||+++++.|...-.
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             899789989998179999999999658

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=93.60  E-value=0.026  Score=28.00  Aligned_cols=27  Identities=26%  Similarity=0.277  Sum_probs=23.1

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             994999986999957699999997413
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .+-.++++|-+-+|||||++.|.|...
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~~  137 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKNI  137 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf             752789986675443555425426615

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=93.32  E-value=0.019  Score=28.67  Aligned_cols=23  Identities=13%  Similarity=0.245  Sum_probs=16.2

Q ss_pred             EEEEECCCCCCHHHHH-HHHHHHH
Q ss_conf             9999869999576999-9999741
Q 029679          109 IVGLAGPPGAGKSTLA-AEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~-~~i~gl~  131 (189)
                      .+-|.|+.||||||.+ .-++.++
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHH
T ss_conf             989995298668999999999999

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.29  E-value=0.019  Score=28.71  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      -++|+|..++|||||+-.|....
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~~~   41 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQRA   41 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHHHC
T ss_conf             89999688886999999999977

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.11  E-value=0.019  Score=28.69  Aligned_cols=24  Identities=17%  Similarity=0.267  Sum_probs=17.1

Q ss_pred             CEEEEECCCCCCHHHH-HHHHHHHH
Q ss_conf             4999986999957699-99999741
Q 029679          108 HIVGLAGPPGAGKSTL-AAEVVRRI  131 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL-~~~i~gl~  131 (189)
                      .-+.|+|+.|+||||. +..++.++
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv~~ll   39 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKIAHLI   39 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf             9989996288438999999999999

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=92.55  E-value=0.049  Score=26.61  Aligned_cols=23  Identities=26%  Similarity=0.293  Sum_probs=19.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             99986999957699999997413
Q 029679          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      ++++|--.+|||||+..|+....
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~~g   34 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHDSK   34 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
T ss_conf             99993789898999999999869

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.46  E-value=0.039  Score=27.13  Aligned_cols=19  Identities=32%  Similarity=0.429  Sum_probs=14.9

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q ss_conf             9998699995769999999
Q 029679          110 VGLAGPPGAGKSTLAAEVV  128 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~~~i~  128 (189)
                      ++++|--++|||||+..|.
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHH
T ss_conf             9999447999999999999

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.14  E-value=0.058  Score=26.25  Aligned_cols=28  Identities=11%  Similarity=0.032  Sum_probs=23.9

Q ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHCC
Q ss_conf             9949999869999576999999974132
Q 029679          106 VKHIVGLAGPPGAGKSTLAAEVVRRINK  133 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~~~i~gl~~~  133 (189)
                      .+..+-+.|++|+||+|+++.++.....
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~   41 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEK   41 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf             9855998898998889999999999843

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.21  E-value=0.067  Score=25.95  Aligned_cols=21  Identities=29%  Similarity=0.335  Sum_probs=15.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHH
Q ss_conf             999986999957699999997
Q 029679          109 IVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~g  129 (189)
                      -++++|-.++|||||...|+-
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~   28 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIY   28 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHH
T ss_conf             799994789989999999999

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.17  E-value=0.062  Score=26.10  Aligned_cols=20  Identities=35%  Similarity=0.489  Sum_probs=17.6

Q ss_pred             EEEECCCCCCHHHHHHHHHH
Q ss_conf             99986999957699999997
Q 029679          110 VGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus       110 ~~ivG~sGsGKSTL~~~i~g  129 (189)
                      ++++|--++|||||+..|..
T Consensus        27 i~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHHHHH
T ss_conf             99995279899999999999

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=88.31  E-value=0.089  Score=25.33  Aligned_cols=21  Identities=29%  Similarity=0.243  Sum_probs=17.6

Q ss_pred             ECCCCEEEEECCCCCCHHHHH
Q ss_conf             549949999869999576999
Q 029679          104 VNVKHIVGLAGPPGAGKSTLA  124 (189)
Q Consensus       104 i~~g~~~~ivG~sGsGKSTL~  124 (189)
                      +++|+.+-|..+.|+|||..+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHCCCCEEEECCCCCCHHHHH
T ss_conf             875996799817998855999

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=87.65  E-value=0.22  Score=23.33  Aligned_cols=22  Identities=9%  Similarity=-0.209  Sum_probs=8.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHH
Q ss_conf             4999986999957699999997
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~g  129 (189)
                      +++.++.++-..-.+..+.+..
T Consensus       143 ~vliv~~~~~~sl~~~~~~~~~  164 (269)
T d1cp2a_         143 EIYIVASGEMMALYAANNISKG  164 (269)
T ss_dssp             EEEEEECSSHHHHHHHHHHHHH
T ss_pred             CEEECCCHHHHHHHHHHHHHHH
T ss_conf             3332134046677789999999

>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.92  E-value=0.17  Score=23.92  Aligned_cols=21  Identities=33%  Similarity=0.352  Sum_probs=8.2

Q ss_pred             CCCCEEEEEC--CCCCCHHHHHH
Q ss_conf             4994999986--99995769999
Q 029679          105 NVKHIVGLAG--PPGAGKSTLAA  125 (189)
Q Consensus       105 ~~g~~~~ivG--~sGsGKSTL~~  125 (189)
                      +.|+..=+.|  ||+||||.|+.
T Consensus        14 P~g~~~yvaaAFPSaCGKTnlAM   36 (363)
T d1khba1          14 PEGEKKYLAAAFPSACGKTNLAM   36 (363)
T ss_dssp             TTSCEEEEEEECCTTSCHHHHHT
T ss_pred             CCCCEEEEEEECCCCCCCHHHHH
T ss_conf             99977999875674434210887

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.29  E-value=0.18  Score=23.79  Aligned_cols=25  Identities=20%  Similarity=0.324  Sum_probs=18.9

Q ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Q ss_conf             4994999986999957699999997
Q 029679          105 NVKHIVGLAGPPGAGKSTLAAEVVR  129 (189)
Q Consensus       105 ~~g~~~~ivG~sGsGKSTL~~~i~g  129 (189)
                      -.|+-+.++.|.|+|||+..-+.+-
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~~~~   80 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLAMSL   80 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHHHHH
T ss_pred             HCCCCEEEEECCCCHHHHHHHHHHH
T ss_conf             7799779992689769999999999

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=84.05  E-value=0.5  Score=21.57  Aligned_cols=25  Identities=32%  Similarity=0.293  Sum_probs=20.3

Q ss_pred             CCEEEEECCCCCCHHH-HHHHHHHHH
Q ss_conf             9499998699995769-999999741
Q 029679          107 KHIVGLAGPPGAGKST-LAAEVVRRI  131 (189)
Q Consensus       107 g~~~~ivG~sGsGKST-L~~~i~gl~  131 (189)
                      |.+.-++||=.||||| |++.+-.+.
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~   27 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLE   27 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             37999991506789999999999998

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=83.68  E-value=0.44  Score=21.84  Aligned_cols=11  Identities=18%  Similarity=-0.070  Sum_probs=3.8

Q ss_pred             EECCCCCCHHH
Q ss_conf             98699995769
Q 029679          112 LAGPPGAGKST  122 (189)
Q Consensus       112 ivG~sGsGKST  122 (189)
                      ++..++.+-..
T Consensus       143 ~V~~~~~~~~~  153 (224)
T d1byia_         143 LVVGVKLGCIN  153 (224)
T ss_dssp             EEEECSTTHHH
T ss_pred             EEEEECCCHHH
T ss_conf             99853031238

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.11  E-value=0.2  Score=23.52  Aligned_cols=19  Identities=42%  Similarity=0.405  Sum_probs=15.2

Q ss_pred             CCCEEEEECCCCCCHHHHH
Q ss_conf             9949999869999576999
Q 029679          106 VKHIVGLAGPPGAGKSTLA  124 (189)
Q Consensus       106 ~g~~~~ivG~sGsGKSTL~  124 (189)
                      .|.-+-+..|.|+|||+.+
T Consensus        39 ~~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             TCSCEEEECSSHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHH
T ss_conf             4999899868998511789

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=81.47  E-value=0.47  Score=21.68  Aligned_cols=22  Identities=32%  Similarity=0.465  Sum_probs=16.0

Q ss_pred             CCEEEEECCCCCCHHHHHHHHH
Q ss_conf             9499998699995769999999
Q 029679          107 KHIVGLAGPPGAGKSTLAAEVV  128 (189)
Q Consensus       107 g~~~~ivG~sGsGKSTL~~~i~  128 (189)
                      -...-|.++-|+|||+++-.+.
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHH
T ss_pred             CCEEEEEECCCCCHHHHHHHHH
T ss_conf             8889999688779999999999

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=81.39  E-value=0.72  Score=20.76  Aligned_cols=23  Identities=22%  Similarity=0.465  Sum_probs=11.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             99998699995769999999741
Q 029679          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (189)
Q Consensus       109 ~~~ivG~sGsGKSTL~~~i~gl~  131 (189)
                      ++-+.|.-|.||||++-.++..+
T Consensus        10 ~i~~sGKGGVGKTTvaa~lA~~l   32 (296)
T d1ihua1          10 YLFFTGKGGVGKTSISCATAIRL   32 (296)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHHHH
T ss_conf             99997998674999999999999

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=81.26  E-value=0.8  Score=20.53  Aligned_cols=25  Identities=36%  Similarity=0.603  Sum_probs=14.4

Q ss_pred             CEEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf             4999986999957699999997413
Q 029679          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (189)
Q Consensus       108 ~~~~ivG~sGsGKSTL~~~i~gl~~  132 (189)
                      .++.+.|-=|.||||+.-.++-.+.
T Consensus        21 ~iii~sGKGGVGKTT~a~nLA~~lA   45 (279)
T d1ihua2          21 GLIMLMGKGGVGKTTMAAAIAVRLA   45 (279)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             8999979998878999999999999