Citrus Sinensis ID: 029692

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19

MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPHTTVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHYEDEASRYMTIGCVEKPLNMLCCWVEDPNSDYFKKHLARLGEYLWVGEDGMRVQEKCVTLADNIPAILNL

cccccccccccccccccccEEEEcccccHHHHHHcccccccccHHHHHHHHHHHccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEccccccEEEEEEcccccHHHHHHHHHHcccEEEEccccEEEcccccHHHHHHHHHcc

ccccEEEcccccccccccEEEEEEEEEccHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHcccccEEEEEccHHHHHHHHHHHHcccccHHHHHHHHHcccHHEEEccccEEcccccHHHHHHHHHHHc

mppefwkfpsflpispgkllcycrltylpmsylygkrfvgpITSLILQLREEiytqpyseinwskmrhfcakediffphttvQNLLWDTLSnvvepvlnhfplnklRQKSLEIAINLIHYedeasrymtigcvekplnmlccwvedpnsdyFKKHLARLGEYlwvgedgmrvQEKCVTLADnipailnl

mppefwkfpsflpispGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPHTTVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHYEDEASRYMTIGCVEKPLNMLCCWVEDPNSDYFKKHLARLGEYLWVGEDGMRVQEKCVTladnipailnl

MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPHTTVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHYEDEASRYMTIGCVEKPLNMLCCWVEDPNSDYFKKHLARLGEYLWVGEDGMRVQEKCVTLADNIPAILNL

****FWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPHTTVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHYEDEASRYMTIGCVEKPLNMLCCWVEDPNSDYFKKHLARLGEYLWVGEDGMRVQEKCVTLADNIPAI***

MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPHTTVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHYEDEASRYMTIGCVEKPLNMLCCWVEDPNSDYFKKHLARLGEYLWVGEDGMRVQEKCVTLADNIPAILNL

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPHTTVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHYEDEASRYMTIGCVEKPLNMLCCWVEDPNSDYFKKHLARLGEYLWVGEDGMRVQEKCVTLADNIPAILNL

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		189	2.2.26 [Sep-21-2011]
E7DN63		761	Beta-amyrin synthase OS=S	N/A	no	0.915	0.227	0.687	1e-71
O82140		763	Beta-Amyrin Synthase 1 OS	N/A	no	0.915	0.226	0.676	3e-70
Q8W3Z1		779	Beta-amyrin synthase OS=B	N/A	no	0.915	0.222	0.666	6e-70
Q2XPU7		769	Lupeol synthase OS=Ricinu	N/A	no	0.915	0.224	0.647	1e-69
E7DN64		763	Delta-amyrin synthase OS=	N/A	no	0.915	0.226	0.664	1e-69
E2IUA6		779	Taraxerol synthase OS=Kal	N/A	no	0.915	0.222	0.666	3e-69
O82146		761	Beta-Amyrin Synthase 2 OS	N/A	no	0.915	0.227	0.658	7e-69
A8CDT3		761	Lupeol synthase OS=Brugui	N/A	no	0.915	0.227	0.653	2e-68
Q9LRH8		758	Beta-amyrin synthase OS=P	N/A	no	0.915	0.228	0.660	3e-68
A8CDT2		759	Beta-amyrin synthase OS=B	N/A	no	0.915	0.227	0.660	4e-68

>sp\|E7DN63\|BAMS_SOLLC Beta-amyrin synthase OS=Solanum lycopersicum GN=TTS1 PE=1 SV=1	Back alignment and function desciption

 Score =  268 bits (686), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 119/173 (68%), Positives = 142/173 (82%)

Query: 1   MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSE 60
           MPPEFW  PSFLP+ P K+ CYCR+ Y+PMSYLYGKRFVGPIT LILQLREE+Y +PY E
Sbjct: 238 MPPEFWILPSFLPVHPAKMWCYCRMVYMPMSYLYGKRFVGPITPLILQLREELYDRPYDE 297

Query: 61  INWSKMRHFCAKEDIFFPHTTVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHY 120
           INW K+RH CAKED+++PH  VQ+L+WD+L    EP+L  +P NKLR K+LE+ +  IHY
Sbjct: 298 INWKKVRHVCAKEDLYYPHPLVQDLMWDSLYICTEPLLTRWPFNKLRNKALEVTMKHIHY 357

Query: 121 EDEASRYMTIGCVEKPLNMLCCWVEDPNSDYFKKHLARLGEYLWVGEDGMRVQ 173
           EDE SRY+TIGCVEK L ML CWVEDPN DYFKKHLAR+ +YLWV EDGM++Q
Sbjct: 358 EDENSRYITIGCVEKVLCMLACWVEDPNGDYFKKHLARIPDYLWVAEDGMKMQ 410

Oxidosqualene cyclase converting oxidosqualene into beta-amyrin, generating five rings and eight asymmetric centers in a single transformation.
Solanum lycopersicum (taxid: 4081)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 3EC: 9

>sp\|O82140\|BAMS1_PANGI Beta-Amyrin Synthase 1 OS=Panax ginseng GN=OSCPNY1 PE=1 SV=1	Back alignment and function description

>sp\|Q8W3Z1\|BAMS_BETPL Beta-amyrin synthase OS=Betula platyphylla GN=OSCBPY PE=1 SV=1	Back alignment and function description

>sp\|Q2XPU7\|LUPS_RICCO Lupeol synthase OS=Ricinus communis PE=1 SV=1	Back alignment and function description

>sp\|E7DN64\|DAMS_SOLLC Delta-amyrin synthase OS=Solanum lycopersicum GN=TTS2 PE=1 SV=1	Back alignment and function description

>sp\|E2IUA6\|TARS_KALDA Taraxerol synthase OS=Kalanchoe daigremontiana PE=1 SV=1	Back alignment and function description

>sp\|O82146\|BAMS2_PANGI Beta-Amyrin Synthase 2 OS=Panax ginseng GN=OSCPNY2 PE=2 SV=1	Back alignment and function description

>sp\|A8CDT3\|LUPS_BRUGY Lupeol synthase OS=Bruguiera gymnorhiza GN=LUS PE=1 SV=1	Back alignment and function description

>sp\|Q9LRH8\|BAMS_PEA Beta-amyrin synthase OS=Pisum sativum GN=OSCPSY PE=2 SV=1	Back alignment and function description

>sp\|A8CDT2\|BAS_BRUGY Beta-amyrin synthase OS=Bruguiera gymnorhiza GN=BAS PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		189
300431227		763	beta-amyrin synthase [Aralia elata]	0.915	0.226	0.687	5e-70
350538549		761	beta-amyrin synthase [Solanum lycopersic	0.915	0.227	0.687	6e-70
116292146		761	multifunctional triterpene synthase [Kan	0.915	0.227	0.687	1e-69
147839872		729	hypothetical protein VITISV_001242 [Viti	0.915	0.237	0.670	4e-69
392621787		763	lupeol synthase [Eleutherococcus trifoli	0.915	0.226	0.682	8e-69
224105317		707	predicted protein [Populus trichocarpa]	1.0	0.267	0.613	1e-68
75220214		763	RecName: Full=Beta-Amyrin Synthase 1 gi\|	0.915	0.226	0.676	1e-68
75248718		779	RecName: Full=Beta-amyrin synthase gi\|18	0.915	0.222	0.666	3e-68
297735720		846	unnamed protein product [Vitis vinifera]	0.915	0.204	0.664	3e-68
166835939		449	beta-amyrin synthase [Bupleurum chinense	0.915	0.385	0.658	4e-68

>gi\|300431227\|gb\|ADK12003.1\| beta-amyrin synthase [Aralia elata]	Back alignment and taxonomy information

 Score =  268 bits (686), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 119/173 (68%), Positives = 143/173 (82%)

Query: 1   MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSE 60
           MPPEFW  PSFLP+ P K+ CYCR+ Y+PMSYLYGKRFVGPIT LILQLREE+Y QPY+E
Sbjct: 240 MPPEFWILPSFLPMHPAKMWCYCRMVYMPMSYLYGKRFVGPITPLILQLREELYAQPYNE 299

Query: 61  INWSKMRHFCAKEDIFFPHTTVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHY 120
           INW K RH CAKEDI++PH  +Q+LLWD+L  + EP+L  +P NKLR+K+L+  +  IHY
Sbjct: 300 INWRKTRHVCAKEDIYYPHPLIQDLLWDSLYVLTEPLLTRWPFNKLREKALQTTMKHIHY 359

Query: 121 EDEASRYMTIGCVEKPLNMLCCWVEDPNSDYFKKHLARLGEYLWVGEDGMRVQ 173
           EDE SRY+TIGCVEK L ML CWVEDPN DYFKKHLAR+ +Y+WV EDGM++Q
Sbjct: 360 EDENSRYITIGCVEKVLCMLACWVEDPNGDYFKKHLARIPDYIWVAEDGMKMQ 412

Source: Aralia elata

Species: Aralia elata

Genus: Aralia

Family: Araliaceae

Order: Apiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|350538549\|ref\|NP_001234604.1\| beta-amyrin synthase [Solanum lycopersicum] gi\|357580425\|sp\|E7DN63.1\|BAMS_SOLLC RecName: Full=Beta-amyrin synthase; AltName: Full=Triterpenoid synthase 1; Short=SlTTS1 gi\|315613943\|gb\|ADU52574.1\| beta-amyrin synthase [Solanum lycopersicum]	Back alignment and taxonomy information

>gi\|116292146\|dbj\|BAF35580.1\| multifunctional triterpene synthase [Kandelia candel]	Back alignment and taxonomy information

>gi\|147839872\|emb\|CAN65909.1\| hypothetical protein VITISV_001242 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|392621787\|gb\|AFM82492.1\| lupeol synthase [Eleutherococcus trifoliatus]	Back alignment and taxonomy information

>gi\|224105317\|ref\|XP_002333832.1\| predicted protein [Populus trichocarpa] gi\|222838872\|gb\|EEE77223.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|75220214\|sp\|O82140.1\|BAMS1_PANGI RecName: Full=Beta-Amyrin Synthase 1 gi\|3688600\|dbj\|BAA33461.1\| beta-Amyrin Synthase [Panax ginseng]	Back alignment and taxonomy information

>gi\|75248718\|sp\|Q8W3Z1.1\|BAMS_BETPL RecName: Full=Beta-amyrin synthase gi\|18147596\|dbj\|BAB83088.1\| beta-amyrin synthase [Betula platyphylla]	Back alignment and taxonomy information

>gi\|297735720\|emb\|CBI18407.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|166835939\|gb\|ABY90140.1\| beta-amyrin synthase [Bupleurum chinense]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		189
UNIPROTKB\|Q8W3Z1		779	OSCBPY "Beta-amyrin synthase"	0.915	0.222	0.666	7.2e-68
UNIPROTKB\|E2IUA6		779	E2IUA6 "Taraxerol synthase" [K	0.915	0.222	0.666	5.1e-67
UNIPROTKB\|Q2XPU7		769	Q2XPU7 "Lupeol synthase" [Rici	0.915	0.224	0.647	6.5e-67
UNIPROTKB\|A8CDT2		759	BAS "Beta-amyrin synthase" [Br	0.915	0.227	0.660	2.2e-66
UNIPROTKB\|A8CDT3		761	LUS "Lupeol synthase" [Bruguie	0.915	0.227	0.653	1.5e-65
TAIR\|locus:2207315		759	BAS "beta-amyrin synthase" [Ar	0.915	0.227	0.666	2.5e-65
UNIPROTKB\|Q9LRH7		764	OSCPSM "Mixed-amyrin synthase"	0.899	0.222	0.678	4.1e-65
UNIPROTKB\|E2IUA9		765	E2IUA9 "Lupeol synthase" [Kala	0.915	0.226	0.649	8.5e-65
UNIPROTKB\|E2IUA7		767	E2IUA7 "Glutinol synthase" [Ka	0.915	0.225	0.649	9.7e-64
TAIR\|locus:2207300		763	LUP2 "lupeol synthase 2" [Arab	0.984	0.243	0.609	2.6e-63

UNIPROTKB\|Q8W3Z1 OSCBPY "Beta-amyrin synthase" [Betula platyphylla (taxid:78630)]	Back alignment and assigned GO terms

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 116/174 (66%), Positives = 144/174 (82%)

Query:     1 MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSE 60
             MPPEFW  PSFLP+ P K+ CYCR+ Y+PMSYLYGKRFVGPIT LILQLREE+YTQPY +
Sbjct:   238 MPPEFWILPSFLPMHPAKMWCYCRMVYMPMSYLYGKRFVGPITPLILQLREELYTQPYHQ 297

Query:    61 INWSKMRHFCAKEDIFFPHTTVQNLLWDTLSNVVEPVLNHFPLNKL-RQKSLEIAINLIH 119
             +NW K+RH CAKEDI++PH  +Q+LLWD+L    EP+L  +P NKL R+K+L++ +  IH
Sbjct:   298 VNWKKVRHLCAKEDIYYPHPLIQDLLWDSLYIFTEPLLTRWPFNKLVREKALQVTMKHIH 357

Query:   120 YEDEASRYMTIGCVEKPLNMLCCWVEDPNSDYFKKHLARLGEYLWVGEDGMRVQ 173
             YEDE SRY+TIGCVEK L ML CWVEDPN DYFKKH+AR+ +Y+WV EDG+++Q
Sbjct:   358 YEDENSRYITIGCVEKVLCMLACWVEDPNGDYFKKHIARIPDYIWVAEDGIKMQ 411

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=IDA

GO:0042300 "beta-amyrin synthase activity" evidence=IDA

UNIPROTKB\|E2IUA6 E2IUA6 "Taraxerol synthase" [Kalanchoe daigremontiana (taxid:23013)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2XPU7 Q2XPU7 "Lupeol synthase" [Ricinus communis (taxid:3988)]	Back alignment and assigned GO terms

UNIPROTKB\|A8CDT2 BAS "Beta-amyrin synthase" [Bruguiera gymnorhiza (taxid:39984)]	Back alignment and assigned GO terms

UNIPROTKB\|A8CDT3 LUS "Lupeol synthase" [Bruguiera gymnorhiza (taxid:39984)]	Back alignment and assigned GO terms

TAIR\|locus:2207315 BAS "beta-amyrin synthase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9LRH7 OSCPSM "Mixed-amyrin synthase" [Pisum sativum (taxid:3888)]	Back alignment and assigned GO terms

UNIPROTKB\|E2IUA9 E2IUA9 "Lupeol synthase" [Kalanchoe daigremontiana (taxid:23013)]	Back alignment and assigned GO terms

UNIPROTKB\|E2IUA7 E2IUA7 "Glutinol synthase" [Kalanchoe daigremontiana (taxid:23013)]	Back alignment and assigned GO terms

TAIR\|locus:2207300 LUP2 "lupeol synthase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.4.99	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		189
PLN02993		763	PLN02993, PLN02993, lupeol synthase	1e-92
PLN03012		759	PLN03012, PLN03012, Camelliol C synthase	1e-89
cd02892		634	cd02892, SQCY_1, Squalene cyclase (SQCY) domain su	8e-65
TIGR01787		621	TIGR01787, squalene_cyclas, squalene/oxidosqualene	3e-47
TIGR03463		634	TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase	6e-37

>gnl\|CDD\|215537 PLN02993, PLN02993, lupeol synthase	Back alignment and domain information

 Score =  285 bits (731), Expect = 1e-92
 Identities = 119/187 (63%), Positives = 145/187 (77%), Gaps = 1/187 (0%)

Query: 1   MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSE 60
           MPPE W  PSFLPI  GK LCY R+ Y+PMSYLYGKRFVGPIT LI+ LREE++ QPY E
Sbjct: 239 MPPEIWLLPSFLPIHLGKTLCYTRMVYMPMSYLYGKRFVGPITPLIMLLREELHLQPYEE 298

Query: 61  INWSKMRHFCAKEDIFFPHTTVQNLLWDTLSNVVEPVLNHFPLNKL-RQKSLEIAINLIH 119
           INW+K R  CAKED+++PH  VQ+L+WDTL N VEP L  +PLNKL R+K+L++A+  IH
Sbjct: 299 INWNKARRLCAKEDMYYPHPLVQDLIWDTLHNFVEPFLTRWPLNKLVREKALQVAMKHIH 358

Query: 120 YEDEASRYMTIGCVEKPLNMLCCWVEDPNSDYFKKHLARLGEYLWVGEDGMRVQEKCVTL 179
           YEDE S Y+TIGCVEK L ML CW+E+PN D+FKKHLAR+ +Y+WV EDGM++Q     L
Sbjct: 359 YEDENSHYITIGCVEKVLCMLACWIENPNGDHFKKHLARIPDYMWVAEDGMKMQSFGSQL 418

Query: 180 ADNIPAI 186
            D   AI
Sbjct: 419 WDTGFAI 425

Length = 763

>gnl\|CDD\|166653 PLN03012, PLN03012, Camelliol C synthase	Back alignment and domain information

>gnl\|CDD\|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>gnl\|CDD\|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases	Back alignment and domain information

>gnl\|CDD\|234220 TIGR03463, osq_cycl, 2,3-oxidosqualene cyclase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		189
PLN03012		759	Camelliol C synthase	100.0
PLN02993		763	lupeol synthase	100.0
KOG0497		760	consensus Oxidosqualene-lanosterol cyclase and rel	100.0
TIGR03463		634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	100.0
cd02892		634	SQCY_1 Squalene cyclase (SQCY) domain subgroup 1;	100.0
TIGR01507		635	hopene_cyclase squalene-hopene cyclase. SHC is an	100.0
TIGR01787		621	squalene_cyclas squalene/oxidosqualene cyclases. T	100.0
COG1657		517	SqhC Squalene cyclase [Lipid metabolism]	99.58
TIGR01507		635	hopene_cyclase squalene-hopene cyclase. SHC is an	96.75
cd02897		292	A2M_2 Proteins similar to alpha2-macroglobulin (al	96.13
PLN03012		759	Camelliol C synthase	92.39
PLN02993		763	lupeol synthase	90.82
cd02889		348	SQCY Squalene cyclase (SQCY) domain; found in clas	88.09
TIGR03463		634	osq_cycl 2,3-oxidosqualene cyclase. This model ide	87.67
COG1657		517	SqhC Squalene cyclase [Lipid metabolism]	81.41

>PLN03012 Camelliol C synthase	Back alignment and domain information

Probab=100.00  E-value=6.2e-60  Score=443.83  Aligned_cols=189  Identities=64%  Similarity=1.192  Sum_probs=181.2

Q ss_pred             CCCcccccCCCCCCCcCcchhhhhhhhhhHHhHhhccccccCChhhhhHhhhhccCCCCCCcccccccCCCccCCCCChh
Q 029692            1 MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPHT   80 (189)
Q Consensus         1 iPpEl~LLP~w~P~~~~~~s~w~R~v~vPl~~l~~~r~~~~~~p~~~~lr~EL~~~~~~~i~w~~~r~~~~~~d~~~p~~   80 (189)
                      |||||||||+||||||||||||||+|||||+||+++||++|++|++.+||+|||++||++|+|.++|+.|+++|+|+|++
T Consensus       239 ~PpElwLLP~~~P~hp~~~~~~~R~vy~Pmsyly~~R~~~~~~~~i~~lr~ELy~~py~~i~w~~~r~~~a~~D~y~p~~  318 (759)
T PLN03012        239 MPPEFWILPSFFPIHPAKMWCYCRLVYLPMSYLYGKRFVGPISPLILQLREEIYLQPYAEINWMKARHLCAKEDAYCPHP  318 (759)
T ss_pred             CChhHHHccCcCCccHHHHHHHHHHHHHHHHHHhcCCccccCCchhhhhHHHhCCCCccccChhhhccccccccccCCch
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhccccCCCCh-HHHHHHHHHHHHHHHhhcCCCCceeecCCchHHHHHHHHhcCCCCHHHHHHHHhh
Q 029692           81 TVQNLLWDTLSNVVEPVLNHFPLN-KLRQKSLEIAINLIHYEDEASRYMTIGCVEKPLNMLCCWVEDPNSDYFKKHLARL  159 (189)
Q Consensus        81 ~~~~~~~~~l~~~~e~~~~~~~~~-~lR~~Al~~a~~~i~~e~~~t~~~~i~Pv~~~~nml~~l~~~~d~p~~~~~l~~l  159 (189)
                      ++++.++..|+++.++++..++++ +||++|+++|++||++||++|+|+||+||++++||++||.++||||.||+|++||
T Consensus       319 ~~~~~~~~~l~~~~~~~l~~~~~~~~LR~~Al~~a~~~I~~ed~~t~y~~i~pv~~~l~ml~~~~~~p~~~~~k~hl~ri  398 (759)
T PLN03012        319 LIQDLIWDCLYIFAEPFLACWPFNKLLREKALGLAMKHIHYEDENSRYITIGCVEKALCMLACWVEDPNGDHFKKHLLRI  398 (759)
T ss_pred             HHHhhhHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhcCCCCCEeeHHHHHHHHHHHHHhCCCCCCHHHHHHHHHh
Confidence            999988888878888877655533 6999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceEecCCceEEecCCCChhhHHHhhhcC
Q 029692          160 GEYLWVGEDGMRVQEKCVTLADNIPAILNL  189 (189)
Q Consensus       160 ~~~l~~~~~g~~~Q~~~S~vWDTAl~~~Al  189 (189)
                      +||+|+++|||+||+|+||||||||++.||
T Consensus       399 ~d~lw~~~dGm~~q~~gSqvWDTa~~~qAl  428 (759)
T PLN03012        399 SDYLWIAEDGMKMQSFGSQLWDSGFALQAL  428 (759)
T ss_pred             hhcEEEeCCceEEcCCCCcHHHHHHHHHHH
Confidence            999999999999999999999999999986

>PLN02993 lupeol synthase	Back alignment and domain information

>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism]	Back alignment and domain information

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase	Back alignment and domain information

>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>TIGR01507 hopene_cyclase squalene-hopene cyclase	Back alignment and domain information

>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases	Back alignment and domain information

>COG1657 SqhC Squalene cyclase [Lipid metabolism]	Back alignment and domain information

>TIGR01507 hopene_cyclase squalene-hopene cyclase	Back alignment and domain information

>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M)	Back alignment and domain information

>PLN03012 Camelliol C synthase	Back alignment and domain information

>PLN02993 lupeol synthase	Back alignment and domain information

>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold	Back alignment and domain information

>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase	Back alignment and domain information

>COG1657 SqhC Squalene cyclase [Lipid metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		189
1w6j_A		732	Structure Of Human Osc In Complex With Ro 48-8071 L		2e-27
1w6k_A		732	Structure Of Human Osc In Complex With Lanosterol L		2e-27

>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071 Length = 732

Back alignment and structure

Iteration: 1

Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 100/172 (58%), Gaps = 6/172 (3%) Query: 3 PEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEIN 62 PE W FP + P P L C+CR YLPMSY Y R L+ LR+E+Y + ++ I+ Sbjct: 213 PEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASID 272 Query: 63 WSKMRHFCAKEDIFFPHTTVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHYED 122 W R+ A ++++ PH+ + +++ L+ + H LRQ++++ I +D Sbjct: 273 WLAQRNNVAPDELYTPHSWLLRVVYALLN-----LYEHHHSAHLRQRAVQKLYEHIVADD 327 Query: 123 EASRYMTIGCVEKPLNMLCCW-VEDPNSDYFKKHLARLGEYLWVGEDGMRVQ 173 ++ ++IG + K +NML W V+ P S F++H++R+ +YLW+G DGM++Q Sbjct: 328 RFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQ 379

PyMOL of 1w6j

>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol Length = 732

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		189
1w6k_A		732	Lanosterol synthase; cyclase, cholesterol, monotop	1e-50
2sqc_A		631	Squalene-hopene cyclase; isomerase, triterpene cyc	1e-26

>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732	Back alignment and structure

 Score =  172 bits (437), Expect = 1e-50
 Identities = 58/177 (32%), Positives = 100/177 (56%), Gaps = 6/177 (3%)

Query: 1   MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSE 60
           + PE W FP + P  P  L C+CR  YLPMSY Y  R       L+  LR+E+Y + ++ 
Sbjct: 211 LFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFAS 270

Query: 61  INWSKMRHFCAKEDIFFPHTTVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHY 120
           I+W   R+  A ++++ PH+ +  +++  L      +  H     LRQ++++     I  
Sbjct: 271 IDWLAQRNNVAPDELYTPHSWLLRVVYALL-----NLYEHHHSAHLRQRAVQKLYEHIVA 325

Query: 121 EDEASRYMTIGCVEKPLNMLCCW-VEDPNSDYFKKHLARLGEYLWVGEDGMRVQEKC 176
           +D  ++ ++IG + K +NML  W V+ P S  F++H++R+ +YLW+G DGM++Q   
Sbjct: 326 DDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKMQGTN 382

PyMOL of 1w6k

>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		189
d1w6ka2		279	a.102.4.2 (A:100-378) Lanosterol synthase {Human (	4e-71
d2sqca2		271	a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alic	3e-27
d1w6ka1		448	a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {	6e-12

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 279	Back information, alignment and structure


class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  214 bits (547), Expect = 4e-71
 Identities = 57/173 (32%), Positives = 100/173 (57%), Gaps = 6/173 (3%)

Query: 1   MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSE 60
           + PE W FP + P  P  L C+CR  YLPMSY Y  R       L+  LR+E+Y + ++ 
Sbjct: 112 LFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFAS 171

Query: 61  INWSKMRHFCAKEDIFFPHTTVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHY 120
           I+W   R+  A ++++ PH+ +  +++  L+     +  H     LRQ++++     I  
Sbjct: 172 IDWLAQRNNVAPDELYTPHSWLLRVVYALLN-----LYEHHHSAHLRQRAVQKLYEHIVA 226

Query: 121 EDEASRYMTIGCVEKPLNMLCCW-VEDPNSDYFKKHLARLGEYLWVGEDGMRV 172
           +D  ++ ++IG + K +NML  W V+ P S  F++H++R+ +YLW+G DGM++
Sbjct: 227 DDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRIPDYLWMGLDGMKM 279

PyMOL of d1w6ka2

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 271	Back information, alignment and structure

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		189
d1w6ka2		279	Lanosterol synthase {Human (Homo sapiens) [TaxId:	100.0
d2sqca2		271	Squalene-hopene cyclase {Alicyclobacillus acidocal	100.0
d1w6ka1		448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	99.41
d1w6ka1		448	Lanosterol synthase {Human (Homo sapiens) [TaxId:	95.61
d2sqca1		352	Squalene-hopene cyclase {Alicyclobacillus acidocal	94.21

>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Lanosterol synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=337.97  Aligned_cols=167  Identities=34%  Similarity=0.752  Sum_probs=160.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             99842226998999967400420013465786741652456871566676542049988886010156788657789716
Q 029692            1 MPPEFWKFPSFLPISPGKLLCYCRLTYLPMSYLYGKRFVGPITSLILQLREEIYTQPYSEINWSKMRHFCAKEDIFFPHT   80 (189)
Q Consensus         1 iPpEl~LLP~w~P~~~~~~~~~~R~v~vPl~il~~~r~~~~~~p~~~~lr~EL~~~~~~~i~w~~~r~~~~~~d~~~p~~   80 (189)
                      +|||+||||+|||||||+||||||+|+|||+||+++||+++++|++.++|+|||+++|++++|.++|+.++++|.|+|++
T Consensus       112 ~P~E~~lLP~w~P~~~~~~~~~~R~v~vPls~l~~~r~~~~~~p~~~~lr~el~~~p~~~i~~~~~r~~~~~~d~~~~~~  191 (279)
T d1w6ka2         112 LFPEMWLFPDWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQELYVEDFASIDWLAQRNNVAPDELYTPHS  191 (279)
T ss_dssp             CCGGGGGSCTTSTTCGGGSCHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHTTSCSSCGGGCCSGGGTTCCCGGGCSSCCC
T ss_pred             CCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf             78878851555862657865666554450687741566678981888888874469832134323567667666678827


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHH-CCCCCHHHHHHHHHH
Q ss_conf             9999999997553210135899938999999999988773208887101168824788889874-288999999999852
Q 029692           81 TVQNLLWDTLSNVVEPVLNHFPLNKLRQKSLEIAINLIHYEDEASRYMTIGCVEKPLNMLCCWV-EDPNSDYFKKHLARL  159 (189)
Q Consensus        81 ~~~~~~~~~l~~~~~~~~~~~~~~~lr~~A~~~a~~~i~~e~~~t~~~~i~Pv~~~~nmi~~l~-~~~d~p~~~~~l~~l  159 (189)
                      ++|..+|++| +.+++    ++++++|++|+++|++||.+||++|+|.||+||++++||++||. +||||+.||+|++|+
T Consensus       192 ~~~~~~d~~l-~~~e~----~~~~~lR~~Al~~a~~~i~~ede~t~~~glg~i~~~lnml~~~~~e~p~s~~~k~hl~ri  266 (279)
T d1w6ka2         192 WLLRVVYALL-NLYEH----HHSAHLRQRAVQKLYEHIVADDRFTKSISIGPISKTINMLVRWYVDGPASTAFQEHVSRI  266 (279)
T ss_dssp             HHHHHHHHHH-HHHHH----TCCHHHHHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHCTTSHHHHHHHHTS
T ss_pred             HHHHHHHHHH-HHHHC----CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHC
T ss_conf             9999999999-98511----585799999999999999988852799852444999999999870398969999888742


Q ss_pred             CCCEEECCCCEEE
Q ss_conf             1251862894488
Q 029692          160 GEYLWVGEDGMRV  172 (189)
Q Consensus       160 ~~~l~~~~~g~~~  172 (189)
                      .||+|+++|||+|
T Consensus       267 ~dy~W~~edGm~m  279 (279)
T d1w6ka2         267 PDYLWMGLDGMKM  279 (279)
T ss_dssp             GGGEEEETTEEEE
T ss_pred             CCCEEECCCCCCC
T ss_conf             1033687566879

PyMOL of d1w6ka2

>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]}	Back information, alignment and structure