Citrus Sinensis ID: 029699

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MSSSSSSSSPNRSRSSNSNNSNEERPRYFDGKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKDRWLLANCHMMVNHCSTRGSCILMHDS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccEEcccccEEEcccccccccccccccEEEEccccccccHHHHHHHHHHHHHccccHHHHcHHHHHccccccccccccccEEEEEEcccccccccccccHHHHHHHcccccccccccccccccccccccccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccHHHHccccccHEEEEcccccccEEEccccEEEccccccccHHHHHHHHHHHcccccccccccHHHHHHcccccEcccccccEEEEEEEccccccccccccHHHHHHHcccccccccccccEEcccccccccccEEEEccc
Coil and Loop (DISEMBL)
msssssssspnrsrssnsnnsneerpryfdgkaKSMCWAkaetvpgrhperwrkdaagnivckrfcnchgclcfeydhivpfskggestadnCQILQTRVnrfksdkeqvdatklkgfscdvkftdkelDIIEMAVygdvirpgnqcrCKTVAEMLGQFKSKDRWLLANCHMMVNHcstrgscilmhds
Flexible Loop (DISEMBL)
msssssssspnrsrssnsnnsneerpryfdgkaksMCWAKAetvpgrhperwrKDAAGNIVCKRFCNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRvnrfksdkeqvdatklkgfscdvkftdKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKDRWLLANCHMMVNHcstrgscilmhds
Low Complexity Region (SEG)
MsssssssspnrsrssnsnnsneerprYFDGKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKDRWLLANCHMMVNHCSTRGSCILMHDS
Disordered region (IsUnstruct)
**********************************SMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKS**EQVDATKLKGFSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKDRWLLANCHMMVNHCSTRGSCIL****
Disordered Region (DISOPRED)
******************************GKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKE*******KGFSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCKTVAEMLG*******WLLANCHMMVNHCSTRGSCILMHD*
Disordered Region (DISEMBL)
*************************PRYFDGKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKDRWLLANCHMMVNHCSTRGSCILMHDS
Disordered Region (DISPRO)
**************************RYFDGKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKDRWLLANCH**VNHCSTRGSC******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSSSSSSSPNRSRSSNSNNSNEERPRYFDGKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFSCDVKFTDKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKDRWLLANCHMMVNHCSTRGSCILMHDS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
359491684	167	PREDICTED: uncharacterized protein LOC10	0.857	0.970	0.782	1e-73
449440818	181	PREDICTED: uncharacterized protein LOC10	0.835	0.872	0.787	5e-72
255547311	173	endonuclease, putative [Ricinus communis	0.867	0.947	0.766	1e-70
224119042	174	predicted protein [Populus trichocarpa]	0.873	0.948	0.747	9e-70
118481005	180	unknown [Populus trichocarpa]	0.783	0.822	0.786	1e-68
297850254	179	predicted protein [Arabidopsis lyrata su	0.777	0.821	0.802	1e-66
15221835	186	HNH endonuclease domain-containing prote	0.783	0.795	0.783	2e-66
351722082	162	uncharacterized protein LOC100527904 [Gl	0.809	0.944	0.740	1e-65
218184321	178	hypothetical protein OsI_33113 [Oryza sa	0.904	0.960	0.648	2e-62
115481558	178	Os10g0335200 [Oryza sativa Japonica Grou	0.904	0.960	0.648	3e-62

>gi|359491684|ref|XP_003634305.1| PREDICTED: uncharacterized protein LOC100852985 [Vitis vinifera] gi|297733935|emb|CBI15182.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (718), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 133/170 (78%), Positives = 148/170 (87%), Gaps = 8/170 (4%)

Query: 6   SSSSPNRSRSSNSNNSNEERPRYFDGKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRF 65
           SSSSP+RSR        EERPR+FD KAKS+CWAKA+ VPGRHP+RWRKDAAGNIVCKRF
Sbjct: 2   SSSSPHRSRD------KEERPRFFDPKAKSLCWAKADAVPGRHPDRWRKDAAGNIVCKRF 55

Query: 66  CNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFSCDVKFT 125
           CNC GCLCFEYDHI+PFSKGGES  +NCQILQTRVNRFKSDK+ VD T+L+G+SCDVKFT
Sbjct: 56  CNCQGCLCFEYDHIIPFSKGGESVPENCQILQTRVNRFKSDKDNVDKTQLQGYSCDVKFT 115

Query: 126 DKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKDRWLLANCHMMVN 175
           DKELDIIEMAVYGDVIRPGNQCRC+TVAEMLGQ+K KDR  +A C +  N
Sbjct: 116 DKELDIIEMAVYGDVIRPGNQCRCRTVAEMLGQYKPKDR--MAACKLPFN 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440818|ref|XP_004138181.1| PREDICTED: uncharacterized protein LOC101204599 [Cucumis sativus] gi|449477195|ref|XP_004154957.1| PREDICTED: uncharacterized protein LOC101224154 [Cucumis sativus]

 Score =  275 bits (704), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 126/160 (78%), Positives = 144/160 (90%), Gaps = 2/160 (1%)

Query: 17  NSNNSNEERPRYFDGKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGCLCFEY 76
           + + S +ERPR+FD KAK+ CWAKA+ VPGRHPERWRKDAAGN+VCKRFCNC GCLCFEY
Sbjct: 20  SGSGSGDERPRFFDAKAKASCWAKADVVPGRHPERWRKDAAGNVVCKRFCNCQGCLCFEY 79

Query: 77  DHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFSCDVKFTDKELDIIEMAV 136
           DHIVP+SKGGESTADNCQILQTRVNRFKS+K+ VD ++LKG+SCDVKFTDKELDIIEMAV
Sbjct: 80  DHIVPYSKGGESTADNCQILQTRVNRFKSNKDDVDTSELKGYSCDVKFTDKELDIIEMAV 139

Query: 137 YGDVIRPGNQCRCKTVAEMLGQFKSKDRWLLANCHMMVNH 176
           YGDVIRPGNQCRC+TV+E+LGQ+KSKDR  LA C +  N 
Sbjct: 140 YGDVIRPGNQCRCRTVSEVLGQYKSKDR--LAPCKLPYNE 177

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547311|ref|XP_002514713.1| endonuclease, putative [Ricinus communis] gi|223546317|gb|EEF47819.1| endonuclease, putative [Ricinus communis]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/167 (76%), Positives = 145/167 (86%), Gaps = 3/167 (1%)

Query: 7   SSSPNRSRS-SNSNNSNEERPRYFDGKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRF 65
           SSSP R+RS SNS +   ERPR+F  KAK++CWA AETVPGRHPERWRKDAAGNIVCKR 
Sbjct: 2   SSSPQRARSESNSGDGAGERPRFFSNKAKNICWANAETVPGRHPERWRKDAAGNIVCKRL 61

Query: 66  CNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFSCDVKFT 125
            NC GCLCF+YDHI+PFSKGGESTA NCQILQTRVN +K+D E VD ++LKG+SCD+KFT
Sbjct: 62  GNCQGCLCFQYDHIIPFSKGGESTAANCQILQTRVNNYKADAEAVDKSQLKGYSCDLKFT 121

Query: 126 DKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKDRWLLANCHM 172
           DKELDIIEMAVYGDVIRPGNQCRC+TVAE+LGQ KSKDR  +A C +
Sbjct: 122 DKELDIIEMAVYGDVIRPGNQCRCRTVAEILGQTKSKDR--VAACKL 166

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119042|ref|XP_002317971.1| predicted protein [Populus trichocarpa] gi|222858644|gb|EEE96191.1| predicted protein [Populus trichocarpa]

 Score =  268 bits (684), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 127/170 (74%), Positives = 144/170 (84%), Gaps = 5/170 (2%)

Query: 6   SSSSPNRSRSSNSNNS---NEERPRYFDGKAKSMCWAKAETVPGRHPERWRKDAAGNIVC 62
           S SSP R R  NSN      ++RPR+FD   K MCW  AE VPGRHPERWRKDAAGNIVC
Sbjct: 1   SPSSPQRYRGGNSNGGGGGEDQRPRFFDKMVKKMCWQNAEIVPGRHPERWRKDAAGNIVC 60

Query: 63  KRFCNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFSCDV 122
           KRFCNCHGCLC+EYDHI+PFSKGGEST DNCQILQTRVNRFKS+K+++D T+LKG+SC++
Sbjct: 61  KRFCNCHGCLCYEYDHILPFSKGGESTVDNCQILQTRVNRFKSNKQELDKTQLKGYSCEI 120

Query: 123 KFTDKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKDRWLLANCHM 172
            FTDKELDIIEMAVYGDVIRPGNQCRC+T+AEMLGQ KSKDR  +A C +
Sbjct: 121 NFTDKELDIIEMAVYGDVIRPGNQCRCRTIAEMLGQLKSKDR--VAACKL 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118481005|gb|ABK92456.1| unknown [Populus trichocarpa]

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 118/150 (78%), Positives = 135/150 (90%), Gaps = 2/150 (1%)

Query: 23  EERPRYFDGKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGCLCFEYDHIVPF 82
           ++RPR+FD   K MCW  AE VPGRHPERWRKDAAGNIVCKRFCNCHGCLC+EYDHI+PF
Sbjct: 26  DQRPRFFDKMVKKMCWQNAEIVPGRHPERWRKDAAGNIVCKRFCNCHGCLCYEYDHILPF 85

Query: 83  SKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFSCDVKFTDKELDIIEMAVYGDVIR 142
           SKGGEST DNCQILQTRVNRFKS+K+++D T+LKG+SC++ FTDKELDIIEMAVYGDVIR
Sbjct: 86  SKGGESTVDNCQILQTRVNRFKSNKQELDKTQLKGYSCEINFTDKELDIIEMAVYGDVIR 145

Query: 143 PGNQCRCKTVAEMLGQFKSKDRWLLANCHM 172
           PGNQCRC+T+AEMLGQ KSKDR  +A C +
Sbjct: 146 PGNQCRCRTIAEMLGQLKSKDR--VAACKL 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297850254|ref|XP_002893008.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297338850|gb|EFH69267.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  258 bits (658), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 118/147 (80%), Positives = 133/147 (90%)

Query: 17  NSNNSNEERPRYFDGKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGCLCFEY 76
           N  ++ EERPR+FDGKAK+ CWA A+TVPGRHPERWRKDAAGNIVCKRF NC+GCLCFEY
Sbjct: 24  NVKSNGEERPRFFDGKAKNKCWANADTVPGRHPERWRKDAAGNIVCKRFGNCNGCLCFEY 83

Query: 77  DHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFSCDVKFTDKELDIIEMAV 136
           DHIVP+SKGGES A+NCQILQTRVNRFKS +E VDAT LK +SC ++FTDKELDIIEMAV
Sbjct: 84  DHIVPYSKGGESIAENCQILQTRVNRFKSAQENVDATTLKSYSCGLQFTDKELDIIEMAV 143

Query: 137 YGDVIRPGNQCRCKTVAEMLGQFKSKD 163
           YGDV+RPG +CRCKTVAE+LGQ KSKD
Sbjct: 144 YGDVLRPGKECRCKTVAELLGQSKSKD 170

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221835|ref|NP_173303.1| HNH endonuclease domain-containing protein [Arabidopsis thaliana] gi|6730716|gb|AAF27111.1|AC011809_20 Unknown protein [Arabidopsis thaliana] gi|26451201|dbj|BAC42704.1| unknown protein [Arabidopsis thaliana] gi|28973585|gb|AAO64117.1| unknown protein [Arabidopsis thaliana] gi|332191624|gb|AEE29745.1| HNH endonuclease domain-containing protein [Arabidopsis thaliana]

 Score =  257 bits (656), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 116/148 (78%), Positives = 132/148 (89%)

Query: 16  SNSNNSNEERPRYFDGKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGCLCFE 75
           SN  ++ EERPR+FDGKAK+ CWA A+ VPGRHPERWRKD AGNIVCKRF NC+GCLCFE
Sbjct: 30  SNVKSNGEERPRFFDGKAKNKCWANADIVPGRHPERWRKDVAGNIVCKRFGNCNGCLCFE 89

Query: 76  YDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFSCDVKFTDKELDIIEMA 135
           YDHIVP+SKGGES A+NCQILQTRVNRFKS +E VDAT LK +SC ++FTDKELD+IEMA
Sbjct: 90  YDHIVPYSKGGESIAENCQILQTRVNRFKSAQENVDATTLKSYSCGLQFTDKELDVIEMA 149

Query: 136 VYGDVIRPGNQCRCKTVAEMLGQFKSKD 163
           VYGDV+RPG +CRCKTVAE+LGQ KSKD
Sbjct: 150 VYGDVLRPGKECRCKTVAELLGQSKSKD 177

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722082|ref|NP_001235440.1| uncharacterized protein LOC100527904 [Glycine max] gi|255633516|gb|ACU17116.1| unknown [Glycine max]

 Score =  254 bits (648), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 117/158 (74%), Positives = 136/158 (86%), Gaps = 5/158 (3%)

Query: 6   SSSSPNRSRSSNSNNSNEERPRYFDGKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRF 65
           SSSSP RSR        E+RPR+FD  AK++CW+KA+TVPGRHPERWRKDAAGN+VCKRF
Sbjct: 2   SSSSPQRSRGDG-----EKRPRFFDSNAKAICWSKADTVPGRHPERWRKDAAGNVVCKRF 56

Query: 66  CNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFSCDVKFT 125
            NC GCLC+EYDHI+PFSKGGESTADNCQILQ+RVNR KSDK  +D+ +LK +SC+V FT
Sbjct: 57  FNCIGCLCYEYDHIIPFSKGGESTADNCQILQSRVNRLKSDKYNIDSDQLKDYSCEVNFT 116

Query: 126 DKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKD 163
           DKELDIIEMAVY DV+RPGNQCRC+T+AE LG+FK KD
Sbjct: 117 DKELDIIEMAVYSDVMRPGNQCRCRTIAEKLGKFKPKD 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218184321|gb|EEC66748.1| hypothetical protein OsI_33113 [Oryza sativa Indica Group]

 Score =  244 bits (622), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/179 (64%), Positives = 139/179 (77%), Gaps = 8/179 (4%)

Query: 6   SSSSPNR------SRSSNSNNSNEERPRYFDGKAKSMCWAKAETVPGRHPERWRKDAAGN 59
           + SSP R      +   +S    +ERPR FD K +S CW KA  V GRHPERWR+DAAGN
Sbjct: 2   APSSPRRDLDGEGTGGGSSAAREKERPRSFDEKTRSACWRKAAVVMGRHPERWRQDAAGN 61

Query: 60  IVCKRFCNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFS 119
           +VC+RF +CHGCLC+EYDHIVPFSKGGEST DNCQILQTRVNR KSDK  ++  +++GFS
Sbjct: 62  VVCRRFWSCHGCLCYEYDHIVPFSKGGESTVDNCQILQTRVNRSKSDKAWIEQAEMQGFS 121

Query: 120 CDVKFTDKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKDRWLLANCHMMVNHCS 178
           CD+KFTDKELD+IEMAVYGDVIRPG QCRC+TVAEMLG+ KSK++  +A C +  N  S
Sbjct: 122 CDIKFTDKELDVIEMAVYGDVIRPGKQCRCRTVAEMLGKVKSKNQ--MAACELPYNDAS 178

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115481558|ref|NP_001064372.1| Os10g0335200 [Oryza sativa Japonica Group] gi|21671981|gb|AAM74343.1|AC115686_10 Putative HNH endonuclease [Oryza sativa Japonica Group] gi|23477807|gb|AAN34947.1| Putative HNH endonuclease [Oryza sativa Japonica Group] gi|31431266|gb|AAP53074.1| HNH endonuclease family protein, expressed [Oryza sativa Japonica Group] gi|113638981|dbj|BAF26286.1| Os10g0335200 [Oryza sativa Japonica Group] gi|125574417|gb|EAZ15701.1| hypothetical protein OsJ_31114 [Oryza sativa Japonica Group] gi|215693775|dbj|BAG88974.1| unnamed protein product [Oryza sativa Japonica Group] gi|215707241|dbj|BAG93701.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 116/179 (64%), Positives = 139/179 (77%), Gaps = 8/179 (4%)

Query: 6   SSSSPNR------SRSSNSNNSNEERPRYFDGKAKSMCWAKAETVPGRHPERWRKDAAGN 59
           + SSP R      +   +S    +ERPR FD K +S CW KA  V GRHPERWR+DAAGN
Sbjct: 2   APSSPRRDLDGEGTGGGSSAAREKERPRSFDEKTRSACWRKAAVVMGRHPERWRQDAAGN 61

Query: 60  IVCKRFCNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQVDATKLKGFS 119
           +VC+RF +CHGCLC+EYDHIVPFSKGGEST DNCQILQTRVNR KSDK  ++  +++GFS
Sbjct: 62  VVCRRFWSCHGCLCYEYDHIVPFSKGGESTVDNCQILQTRVNRSKSDKAWIEQAEMQGFS 121

Query: 120 CDVKFTDKELDIIEMAVYGDVIRPGNQCRCKTVAEMLGQFKSKDRWLLANCHMMVNHCS 178
           CD+KFTDKELD+IEMAVYGDVIRPG QCRC+TVAEMLG+ KSK++  +A C +  N  S
Sbjct: 122 CDIKFTDKELDVIEMAVYGDVIRPGKQCRCRTVAEMLGKVKSKNQ--MAACELPHNDAS 178

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
TAIR|locus:2035020	186	AT1G18680 [Arabidopsis thalian	0.719	0.731	0.801	9e-61
TAIR|locus:2079137	234	AT3G47490 [Arabidopsis thalian	0.645	0.521	0.459	4.4e-29

TAIR|locus:2035020 AT1G18680 [Arabidopsis thaliana (taxid:3702)]

 Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
 Identities = 109/136 (80%), Positives = 123/136 (90%)

Query:    28 YFDGKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGCLCFEYDHIVPFSKGGE 87
             +FDGKAK+ CWA A+ VPGRHPERWRKD AGNIVCKRF NC+GCLCFEYDHIVP+SKGGE
Sbjct:    42 FFDGKAKNKCWANADIVPGRHPERWRKDVAGNIVCKRFGNCNGCLCFEYDHIVPYSKGGE 101

Query:    88 STADNCQILQTRVNRFKSDKEQVDATKLKGFSCDVKFTDKELDIIEMAVYGDVIRPGNQC 147
             S A+NCQILQTRVNRFKS +E VDAT LK +SC ++FTDKELD+IEMAVYGDV+RPG +C
Sbjct:   102 SIAENCQILQTRVNRFKSAQENVDATTLKSYSCGLQFTDKELDVIEMAVYGDVLRPGKEC 161

Query:   148 RCKTVAEMLGQFKSKD 163
             RCKTVAE+LGQ KSKD
Sbjct:   162 RCKTVAELLGQSKSKD 177

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2079137 AT3G47490 [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 56/122 (45%), Positives = 78/122 (63%)

Query:    29 FDGKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGCLCFEYDHIVPFSKGGES 88
             F    K  CW KAE + GR PERWR+D  GNIV ++   C GCLC +YDHIVP+SKGG+S
Sbjct:   111 FPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLVGCPGCLCHDYDHIVPYSKGGKS 170

Query:    89 TADNCQILQTRVNRFKSDKEQVDATKLKGFSCDVKFTDKELDIIEMAVYGDVIRPGNQCR 148
             T +NCQ+LQ +VNR K +K  +  ++L   S   +   +++D+IE+  YG+V R      
Sbjct:   171 TLENCQVLQAKVNRSKGNKTDISRSELIQRSSYCRVAGRDMDLIELTAYGNVQRAPTSSG 230

Query:   149 CK 150
             C+
Sbjct:   231 CR 232


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.458    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      189       163   0.00084  107 3  11 22  0.45    31
                                                     30  0.44    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  613 (65 KB)
  Total size of DFA:  184 KB (2105 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.92u 0.07s 15.99t   Elapsed:  00:00:03
  Total cpu time:  15.92u 0.07s 15.99t   Elapsed:  00:00:03
  Start:  Sat May 11 08:04:53 2013   End:  Sat May 11 08:04:56 2013

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0004519 "endonuclease activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	189
pfam01844	47	pfam01844, HNH, HNH endonuclease	6e-06
cd00085	57	cd00085, HNHc, HNH nucleases; HNH endonuclease sig	8e-04
smart00507	52	smart00507, HNHc, HNH nucleases	0.004

>gnl|CDD|216737 pfam01844, HNH, HNH endonuclease

 Score = 41.5 bits (98), Expect = 6e-06
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 61  VCKRFCNCHGCLCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDK 107
            C R          E DHI+P SKGG     N  +L    +R K  +
Sbjct: 3   YCGR--PFKDTDALEVDHIIPRSKGGADDLSNLVLLCRSCHRRKHAR 47

Length = 47

>gnl|CDD|238038 cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins

 Score = 35.9 bits (83), Expect = 8e-04
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 50  ERWRKDAAGNIVCKRFCNCHGCL-CFEYDHIVPFSKGGESTADNCQILQTRVNR 102
              R           +C   G     E DHI+P S GG +  DN  +L  + +R
Sbjct: 1   RSHRLVLLARDGLCPYCGKPGGTEGLEVDHIIPLSDGGNNDLDNLVLLCRKCHR 54

The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins. Length = 57

>gnl|CDD|214702 smart00507, HNHc, HNH nucleases

 Score = 34.0 bits (78), Expect = 0.004
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 64 RFCNCHGCLCFEYDHIVPFSKGGESTADNCQIL 96
           +C        E DHI+P S GG    DN  +L
Sbjct: 14 AYCGKPASEGLEVDHIIPLSDGGNDDLDNLVLL 46

Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
PF13395	54	HNH_4: HNH endonuclease	99.24
PF01844	47	HNH: HNH endonuclease; InterPro: IPR002711 HNH end	99.14
cd00085	57	HNHc HNH nucleases; HNH endonuclease signature whi	99.11
TIGR01865	805	cas_Csn1 CRISPR-associated protein, Csn1 family. C	98.89
COG1403	146	McrA Restriction endonuclease [Defense mechanisms]	98.88
smart00507	52	HNHc HNH nucleases.	98.8
TIGR02646	144	conserved hypothetical protein TIGR02646. Members	98.52
PRK11295	113	hypothetical protein; Provisional	98.49
PF14279	71	HNH_5: HNH endonuclease	96.69
PHA02565	157	49 recombination endonuclease VII; Provisional	91.84
COG3513	1088	Predicted CRISPR-associated nuclease, contains Mcr	90.12
TIGR02986	424	restrict_Alw26I type II restriction endonuclease,	88.21
PF13391	66	HNH_2: HNH endonuclease	86.79
TIGR03031	802	cas_csx12 CRISPR-associated protein, Csx12 family.	84.18
PF05766	189	NinG: Bacteriophage Lambda NinG protein; InterPro:	83.61
COG3183	272	Predicted restriction endonuclease [Defense mechan	83.45

>PF13395 HNH_4: HNH endonuclease

Probab=99.24  E-value=2.6e-12  Score=87.47  Aligned_cols=36  Identities=36%  Similarity=0.557  Sum_probs=35.0

Q ss_pred             CccceeEeccCCCCChHhHHHHHhHHHHhhccCCch
Q 029699           74 FEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQ  109 (189)
Q Consensus        74 ~evDHIiP~S~GG~~~~~NLq~lC~~CN~~K~n~~~  109 (189)
                      +++|||+|+|.+|.+++.||+++|..||+.|++++|
T Consensus        18 ~~iDHiiP~s~~~~~s~~Nlvl~~~~~N~~K~~k~P   53 (54)
T PF13395_consen   18 YEIDHIIPRSRGGDDSFWNLVLCCKECNRSKGNKTP   53 (54)
T ss_pred             ceeEEEecccccCCCCcchhheECHHHhhcccccCC
Confidence            799999999999999999999999999999999987

>PF01844 HNH: HNH endonuclease; InterPro: IPR002711 HNH endonuclease is found in bacteria and viruses [, , ]

Probab=99.14  E-value=1.6e-12  Score=84.03  Aligned_cols=40  Identities=38%  Similarity=0.643  Sum_probs=30.2

Q ss_pred             CCCC-------CCCccceeEeccCCCCChHhHHHHHhHHHHhhccCC
Q 029699           68 CHGC-------LCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDK  107 (189)
Q Consensus        68 C~~C-------~~~evDHIiP~S~GG~~~~~NLq~lC~~CN~~K~n~  107 (189)
                      |++|       ..+++|||+|++.||.++++||++||..||+.|+++
T Consensus         1 C~~C~~~~~~~~~~~v~Hi~~~~~gg~~~~~Nl~~lC~~Ch~~k~~k   47 (47)
T PF01844_consen    1 CQYCGKPGSDNESLHVHHIIPRSKGGKNDLENLILLCPSCHRKKHDK   47 (47)
T ss_dssp             -TTT--B--GG-GEEEEESS-TTTT---STTTEEEEEHHHHHHHH--
T ss_pred             CCCCCCcCccCcceEeECcCchhcCCCCCHHHHHHHhHHHHHHhcCC
Confidence            6778       247999999999999999999999999999999864

This family includes pyocins, colicins and anaredoxins.; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity; PDB: 2QGP_C.

>cd00085 HNHc HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins

Probab=99.11  E-value=1.1e-10  Score=76.12  Aligned_cols=40  Identities=38%  Similarity=0.608  Sum_probs=36.4

Q ss_pred             CCCCCCC------CCccceeEeccCCCCChHhHHHHHhHHHHhhcc
Q 029699           66 CNCHGCL------CFEYDHIVPFSKGGESTADNCQILQTRVNRFKS  105 (189)
Q Consensus        66 ~~C~~C~------~~evDHIiP~S~GG~~~~~NLq~lC~~CN~~K~  105 (189)
                      +.|++|.      .+++|||+|++.||.++++||+++|..||..|+
T Consensus        12 ~~C~~c~~~~~~~~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch~~~~   57 (57)
T cd00085          12 GLCPYCGKPGGTEGLEVDHIIPLSDGGNNDLDNLVLLCRKCHRKKH   57 (57)
T ss_pred             CcCccCCCcCCCCCceEEeecchhhCCCCchHHhHHHHHHHhhccC
Confidence            4699993      579999999999999999999999999999874

The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.

>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family

Probab=98.89  E-value=1.8e-09  Score=106.81  Aligned_cols=49  Identities=22%  Similarity=0.299  Sum_probs=44.4

Q ss_pred             eecCCCCCCCC------------CCccceeEeccCCCCChHhHHHHHhHHHHhhccCCchh
Q 029699           62 CKRFCNCHGCL------------CFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQV  110 (189)
Q Consensus        62 ~r~~~~C~~C~------------~~evDHIiP~S~GG~~~~~NLq~lC~~CN~~K~n~~~~  110 (189)
                      .++++.|+||+            .+++|||+|+|+||.|+++|++++|..||+.|++++|.
T Consensus       578 ~~q~~~C~Y~g~~i~~~~l~~~~~~~iDHIiP~s~~~dds~~N~vl~~~~~N~~K~~~tp~  638 (805)
T TIGR01865       578 YQQNGKCMYTGKEIDIDDLFDLSYYEIDHILPQSRSFDDSISNKVLVLASENQEKGDQTPY  638 (805)
T ss_pred             HHcCCcCCCCCCcCccccccCCCCCceeeecccccCCCCcHHHHHHHhHHHHhhccCCCHH
Confidence            45677899992            26899999999999999999999999999999999995

CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.

>COG1403 McrA Restriction endonuclease [Defense mechanisms]

Probab=98.88  E-value=1.7e-09  Score=82.21  Aligned_cols=51  Identities=31%  Similarity=0.504  Sum_probs=44.6

Q ss_pred             eEeecCCCCCCC--C--CCccceeEeccCCCCChHhHHHHHhHHHHhhccCCchh
Q 029699           60 IVCKRFCNCHGC--L--CFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQV  110 (189)
Q Consensus        60 vv~r~~~~C~~C--~--~~evDHIiP~S~GG~~~~~NLq~lC~~CN~~K~n~~~~  110 (189)
                      ++.++.+.|.||  .  ..++|||+|.+.||.+.++||++||..||..|++....
T Consensus        64 ~~~~d~~~c~~c~~~~~~~~~dHiip~~~g~~~~~~Nl~~lc~~c~~~k~~~~~~  118 (146)
T COG1403          64 VLLRDNGLCQYCGSVGTDLEVDHIVPLSRGGASAWENLETLCERCHNKKGSRLPG  118 (146)
T ss_pred             HHccccccccccCCcCCCCceeeEeecccCCcchHHHHHHHHHhhcccccccchh
Confidence            344455789999  3  58999999999999999999999999999999998874

>smart00507 HNHc HNH nucleases

Probab=98.80  E-value=6.2e-10  Score=71.20  Aligned_cols=37  Identities=35%  Similarity=0.605  Sum_probs=33.7

Q ss_pred             CCCCCCC-----CCccceeEeccCCCCChHhHHHHHhHHHHh
Q 029699           66 CNCHGCL-----CFEYDHIVPFSKGGESTADNCQILQTRVNR  102 (189)
Q Consensus        66 ~~C~~C~-----~~evDHIiP~S~GG~~~~~NLq~lC~~CN~  102 (189)
                      +.|++|.     .+++|||+|++.||.++++||+++|..||.
T Consensus        11 ~~C~~C~~~~~~~~~v~Hi~p~~~~~~~~~~Nl~~~c~~ch~   52 (52)
T smart00507       11 GVCAYCGKPASEGLEVDHIIPLSDGGNDDLDNLVLLCPKCHI   52 (52)
T ss_pred             CCCcCCcCCCCCCeEEEecCChhcCCCCChHhCeecChhhCc
Confidence            5799992     379999999999999999999999999984

>TIGR02646 conserved hypothetical protein TIGR02646

Probab=98.52  E-value=7.1e-08  Score=77.03  Aligned_cols=72  Identities=14%  Similarity=0.041  Sum_probs=52.9

Q ss_pred             CCCCCCC------CCccceeEeccCCCCC--hHhHHHHHhHH---------HHhhccCCchhhhccccccCCCCCCChhh
Q 029699           66 CNCHGCL------CFEYDHIVPFSKGGES--TADNCQILQTR---------VNRFKSDKEQVDATKLKGFSCDVKFTDKE  128 (189)
Q Consensus        66 ~~C~~C~------~~evDHIiP~S~GG~~--~~~NLq~lC~~---------CN~~K~n~~~~~~~~~~~~s~~~~~t~~~  128 (189)
                      +.|.||.      .++||||+|.+..+..  +++||.++|..         ||..|++... ....-..++|..+.+.++
T Consensus        25 ~~C~YC~~~~~~~~~~ieH~~Pk~~~~~~~~~~~NL~~sC~~~n~~~~~~~Cn~~K~~~~~-~~~~~~~i~P~~~~~~~~  103 (144)
T TIGR02646        25 GLCAYCEREIELLGSHIEHFRPKGAYPPLTLDWSNLFGSCHRESKQGNPLHCGRFKDNSCG-SNNFDELIDPLADDCEQL  103 (144)
T ss_pred             CCcCccCCCcCCCCcceeeecccCCChhhhcChhhchhhccccCCCCCccccccccccccc-ccccccccCCCCCChHHh
Confidence            4699993      4899999999988885  56999999999         9999976544 222335677877766666


Q ss_pred             hhhhheeeecccc
Q 029699          129 LDIIEMAVYGDVI  141 (189)
Q Consensus       129 ~~~ie~ai~g~v~  141 (189)
                      |...   ..|.|.
T Consensus       104 f~~~---~~G~i~  113 (144)
T TIGR02646       104 FTYL---LTGKIE  113 (144)
T ss_pred             eeec---CCCcEE
Confidence            6543   445554

Members of this uncharacterized protein family are found exclusively in bacteria. Neighboring genes in various genomes are also uncharacterized or may annotated as similar to restriction system proteins.

>PRK11295 hypothetical protein; Provisional

Probab=98.49  E-value=3.3e-08  Score=77.46  Aligned_cols=47  Identities=15%  Similarity=0.133  Sum_probs=39.2

Q ss_pred             ecCCCCCCCCC---------CccceeEeccCCCCChHhHHHHHhHHHHhhccCCch
Q 029699           63 KRFCNCHGCLC---------FEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQ  109 (189)
Q Consensus        63 r~~~~C~~C~~---------~evDHIiP~S~GG~~~~~NLq~lC~~CN~~K~n~~~  109 (189)
                      ++.+.|+.|..         .+||||+|...|+.++.+|||+||..||..|..+..
T Consensus        22 r~p~lC~~Cgr~~~~a~~~a~vVDHIip~~~gd~~D~sNLQ~LC~~CHn~kh~R~~   77 (113)
T PRK11295         22 LYPWVCGRCSREFVYSNLRELTVHHIDHDHDNNPEDGSNWELLCLYCHDHEHSKYT   77 (113)
T ss_pred             HCcchhhhhcChhccCCCCCceeeccCCCCCCCCCchhHHHHHhHHHHhHHHhhHH
Confidence            33457999933         499999999999999999999999999999875543

>PF14279 HNH_5: HNH endonuclease

Probab=96.69  E-value=0.00082  Score=48.56  Aligned_cols=39  Identities=31%  Similarity=0.491  Sum_probs=31.7

Q ss_pred             CCCC------CCCccceeEeccCCCCChHhHHHHHhHHHHhhccCCch
Q 029699           68 CHGC------LCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQ  109 (189)
Q Consensus        68 C~~C------~~~evDHIiP~S~GG~~~~~NLq~lC~~CN~~K~n~~~  109 (189)
                      |.||      ..+...||||-|-||.....|   .|..||..=+....
T Consensus         1 Ci~C~~~~~~~~~s~EHIIP~sLGG~~~~~~---vC~~CN~~~g~~vD   45 (71)
T PF14279_consen    1 CIYCNKEKSESNFSEEHIIPESLGGKLKINN---VCDKCNNKFGSKVD   45 (71)
T ss_pred             CccCCCCCCccCCCccccCchhcCCcccccc---hhHHHhHHHhHHHH
Confidence            7888      234589999999999888777   99999998876543

>PHA02565 49 recombination endonuclease VII; Provisional

Probab=91.84  E-value=0.11  Score=43.17  Aligned_cols=52  Identities=15%  Similarity=0.175  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHcCCCCCCCccchhccccCCeEeecCCCCCCCC--------CCccceeEeccCCCCChHhHHHHHhHHHHh
Q 029699           31 GKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGCL--------CFEYDHIVPFSKGGESTADNCQILQTRVNR  102 (189)
Q Consensus        31 ~~~R~~~w~ka~~v~Gr~p~r~R~da~gnvv~r~~~~C~~C~--------~~evDHIiP~S~GG~~~~~NLq~lC~~CN~  102 (189)
                      ++.++++++.++   |                    .|+.|.        ..++||.-|.+.+.+  =.=-.+||..||.
T Consensus         9 ~~~k~~l~e~Q~---G--------------------~CaiC~~~l~~~~~~~~vDHDH~l~g~~T--G~VRGLLC~~CN~   63 (157)
T PHA02565          9 KEEKQKLFEAQN---G--------------------ICPLCKRELDGDVSKNHLDHDHELNGPNA--GRVRGLLCNLCNA   63 (157)
T ss_pred             HHHHHHHHHHhC---C--------------------cCCCCCCccCCCccccccCCCCCCCCccc--ccccccCchhhhh
Confidence            355667777777   4                    599992        258999998873222  1125789999999


Q ss_pred             hccCC
Q 029699          103 FKSDK  107 (189)
Q Consensus       103 ~K~n~  107 (189)
                      ..|.-
T Consensus        64 ~lG~~   68 (157)
T PHA02565         64 LEGQM   68 (157)
T ss_pred             hhhhh
Confidence            88764

>COG3513 Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]

Probab=90.12  E-value=0.083  Score=53.71  Aligned_cols=49  Identities=24%  Similarity=0.306  Sum_probs=43.3

Q ss_pred             eecCCCCCCC------------CCCccceeEeccCCCCChHhHHHHHhHHHHhhccCCchh
Q 029699           62 CKRFCNCHGC------------LCFEYDHIVPFSKGGESTADNCQILQTRVNRFKSDKEQV  110 (189)
Q Consensus        62 ~r~~~~C~~C------------~~~evDHIiP~S~GG~~~~~NLq~lC~~CN~~K~n~~~~  110 (189)
                      .-+++.|.|-            ...+||||+|.|+-=.|..+|.++.=..=|+.|+|.+|.
T Consensus       568 ~~Q~gkcmYsgqei~I~rL~dk~~~eIDHi~P~Sr~~DDS~~NkVLv~s~~Nq~KgnqtP~  628 (1088)
T COG3513         568 YLQNGKCMYSGQEIDIHRLSDKGYYEIDHIVPQSRTWDDSIDNKVLVLSSENQEKGNQTPY  628 (1088)
T ss_pred             HHhcCcccccCcccchhhcccccceeeceeccccccccccccceeEEeccccccccCCCCH
Confidence            3467789998            237999999999999999999999999999999999993

>TIGR02986 restrict_Alw26I type II restriction endonuclease, Alw26I/Eco31I/Esp3I family

Probab=88.21  E-value=0.2  Score=47.10  Aligned_cols=82  Identities=20%  Similarity=0.246  Sum_probs=51.3

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHcCCCCCCCccchhc-cccCCeEeecCCCCCCC----CCCccceeEeccCCCCChHhHH
Q 029699           19 NNSNEERPRYFDGKAKSMCWAKAETVPGRHPERWRK-DAAGNIVCKRFCNCHGC----LCFEYDHIVPFSKGGESTADNC   93 (189)
Q Consensus        19 ~~~~~~~~R~F~~~~R~~~w~ka~~v~Gr~p~r~R~-da~gnvv~r~~~~C~~C----~~~evDHIiP~S~GG~~~~~NL   93 (189)
                      .|+-..+-+.++..-|..-|--++.        |+. |+.=+......+.|+.|    .....|||=|.|.|=.. .-+.
T Consensus       205 kGR~~eNlkSYt~DRRafEyWsDGn--------w~aAd~Lmg~~~~~~~~~~~~~~~p~~~saDHIGPISlGF~h-~P~F  275 (424)
T TIGR02986       205 PGRSDENLKSYTKDRRAFEYWSDGN--------WAAADQLMGKAGFNRCSIPECCKHPEKISADHIGPISLGFVH-DPRF  275 (424)
T ss_pred             CCcchhhHhhhhhhHHHHHHHhcCc--------HHHHHHHhCcccCCcccCcccccCCCCCCccccCCccccccc-Cccc
Confidence            3444566667776666655554431        111 11111112233455666    35789999999997654 4456


Q ss_pred             HHHhHHHHhhccCCch
Q 029699           94 QILQTRVNRFKSDKEQ  109 (189)
Q Consensus        94 q~lC~~CN~~K~n~~~  109 (189)
                      |++|..||..|.++..
T Consensus       276 qplc~~cNSaKnnR~~  291 (424)
T TIGR02986       276 QPLCSSCNSAKNDRLT  291 (424)
T ss_pred             ccccccccccccccee
Confidence            9999999999999876

Members of this family are type II restriction endonucleases of the Alw26I/Eco31I/Esp3I family. Characterized specificities of three members are GGTCTC, CGTCTC, and the shared subsequence GTCTC.

>PF13391 HNH_2: HNH endonuclease

Probab=86.79  E-value=0.12  Score=34.93  Aligned_cols=31  Identities=32%  Similarity=0.533  Sum_probs=24.9

Q ss_pred             CCccceeEeccCC--CCC-----------hHhHHHHHhHHHHhh
Q 029699           73 CFEYDHIVPFSKG--GES-----------TADNCQILQTRVNRF  103 (189)
Q Consensus        73 ~~evDHIiP~S~G--G~~-----------~~~NLq~lC~~CN~~  103 (189)
                      .+|+=||+|++.+  +..           +.+|+.+||..+|..
T Consensus        14 ~~eaaHI~P~s~~~~~~~~~~~~~~~~~~~~~Ngl~L~~~lH~~   57 (66)
T PF13391_consen   14 LLEAAHIVPFSLGSWWMNNWFGEYANDWISPSNGLLLRPDLHKL   57 (66)
T ss_pred             cEEEEEcccCccCCCchhhhhhhhhccCCCccEEEEcCHhHHHH
Confidence            4678899999987  445           678999999988854

>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family

Probab=84.18  E-value=0.51  Score=46.81  Aligned_cols=25  Identities=28%  Similarity=0.123  Sum_probs=20.1

Q ss_pred             ecCCCCCCCC-----CCccceeEeccCCCC
Q 029699           63 KRFCNCHGCL-----CFEYDHIVPFSKGGE   87 (189)
Q Consensus        63 r~~~~C~~C~-----~~evDHIiP~S~GG~   87 (189)
                      ..-+.|+||+     .-|+|||+|+|+-|+
T Consensus       758 fs~gIcpY~Ga~iG~~gEiDHI~PRSht~k  787 (802)
T TIGR03031       758 FSMGICPYKGASIGGQGEIDHIYPRSHSKK  787 (802)
T ss_pred             HhccCCCCCCCCCCCccccccccccccccc
Confidence            3456899993     469999999998765

Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.

>PF05766 NinG: Bacteriophage Lambda NinG protein; InterPro: IPR008713 The ninR region of phage lambda contains two recombination genes, ninB (also known as orf) and ninG (also known as rap)

Probab=83.61  E-value=0.84  Score=38.87  Aligned_cols=68  Identities=24%  Similarity=0.165  Sum_probs=45.9

Q ss_pred             CCCCCCC-----CCCccceeEeccCCCC--ChHhHHHHHhHHHHhhccCCchhhhccc------------cccCCCCCCC
Q 029699           65 FCNCHGC-----LCFEYDHIVPFSKGGE--STADNCQILQTRVNRFKSDKEQVDATKL------------KGFSCDVKFT  125 (189)
Q Consensus        65 ~~~C~~C-----~~~evDHIiP~S~GG~--~~~~NLq~lC~~CN~~K~n~~~~~~~~~------------~~~s~~~~~t  125 (189)
                      +..|.+|     ..|+.-|...+..--.  =+.+|+-..|..||+.++.....+...|            ..-+...+|+
T Consensus        87 ~~~CiSCG~~~~~~~dagHy~s~g~~~~lRF~~~N~~~qC~~CN~~~sgn~~~Yr~~Li~kiG~~~ve~Le~~~~~~k~~  166 (189)
T PF05766_consen   87 GKPCISCGRKHGGQWDAGHYRSRGAAPELRFNEDNIHAQCKHCNRHLSGNIVEYRIGLIEKIGQERVEWLEGPHEPRKWT  166 (189)
T ss_pred             CCCcccCCCcCCCCcccccccccccCcccccChhhHhHcCCccccccccCHHHHHHHHHHHHhHHHHHHHhcCCCCCCCC
Confidence            4689999     3477778876532222  2788999999999999998766333322            2334556677


Q ss_pred             hhhhhhh
Q 029699          126 DKELDII  132 (189)
Q Consensus       126 ~~~~~~i  132 (189)
                      .++++.|
T Consensus       167 ~~el~~i  173 (189)
T PF05766_consen  167 IEELKAI  173 (189)
T ss_pred             HHHHHHH
Confidence            7776544

These genes are involved in the RecF and RecBCD recombination pathways of Escherichia coli that operate on phage lambda [, ]. NinB and NinG participate in Red recombination, the primary pathway operating when wild-type lambda grows lytically in rec+ cells [].

>COG3183 Predicted restriction endonuclease [Defense mechanisms]

Probab=83.45  E-value=0.77  Score=41.12  Aligned_cols=43  Identities=14%  Similarity=0.271  Sum_probs=32.1

Q ss_pred             CCCCCC-------------CCCccceeEeccCCC---C-ChHhHHHHHhHHHHhhccCCc
Q 029699           66 CNCHGC-------------LCFEYDHIVPFSKGG---E-STADNCQILQTRVNRFKSDKE  108 (189)
Q Consensus        66 ~~C~~C-------------~~~evDHIiP~S~GG---~-~~~~NLq~lC~~CN~~K~n~~  108 (189)
                      ..|..|             ..-||+|++|.+.=+   . +...-|.++|.-||..-+.+.
T Consensus       196 ~vC~vC~fdF~k~YGe~gKgyIeVHH~~piae~e~~~~vnp~tDL~plCpNCH~mvHrr~  255 (272)
T COG3183         196 TVCDVCEFDFQKKYGEIGKGYIEVHHKIPIAEFEGEYHVNPLTDLAPLCPNCHKMVHRRR  255 (272)
T ss_pred             ceeeecCccHHHHhhhhccCeEEEeeccchhhhcCccccCchhhhhhcCccHHHHHhccC
Confidence            468999             124999999998322   2 678899999999997655433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d2gykb1	130	DNase domain of colicin E9 {Escherichia coli [TaxI	90.92
d2jb0b1	124	DNase domain of colicin E7 {Escherichia coli [TaxI	89.99

>d2gykb1 d.4.1.1 (B:4-133) DNase domain of colicin E9 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: His-Me finger endonucleases
superfamily: His-Me finger endonucleases
family: HNH-motif
domain: DNase domain of colicin E9
species: Escherichia coli [TaxId: 562]

Probab=90.92  E-value=0.014  Score=30.41  Aligned_cols=75  Identities=20%  Similarity=0.299  Sum_probs=44.9

Q ss_pred             CCCCCCCC--HHHHHHHHHHCCCCCCCCCCCHHCCCCCCEEEECCCCCCCC---------CCCCCCEEEECCCCCC-CHH
Q ss_conf             88889887--88999999871899999951022013577375069987888---------8772113675369999-907
Q 029699           23 EERPRYFD--GKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGC---------LCFEYDHIVPFSKGGE-STA   90 (189)
Q Consensus        23 ~~~~R~f~--~~~R~~~w~ka~~v~Gr~~~r~R~da~gnvv~r~~~~C~~C---------~~~evDHIiP~s~GG~-~~~   90 (189)
                      +.+-|.|.  .+-|++.|....    .+|+...+-.-.|...-..+.-++-         ..||++|++|.+.||. -++
T Consensus        38 kLrGr~F~sFd~FR~afW~~Va----~DpeL~~QF~~~N~~rmk~G~AP~a~~~e~~G~r~kfElHH~~~I~~GG~VYdi  113 (130)
T d2gykb1          38 KLRDKEFKSFDDFRKAVWEEVS----KDPELSKNLNPSNKSSVSKGYSPFTPKNQQVGGRKVYELHHDKPISQGGEVYDM  113 (130)
T ss_dssp             HHTTCEESSHHHHHHHHHHHHH----HCTTTGGGSCHHHHHHHHTTCCCBCCGGGCBTTBCBCEEEESSCGGGTCCSSBG
T ss_pred             HHCCCCCCCHHHHHHHHHHHHH----CCHHHHHHHCHHHHHHHHCCCCCCCCHHHHCCCEEEEEECCCCCCCCCCEEEEC
T ss_conf             8658856888899999999981----099999985888899986889998982364198227994267432469845435


Q ss_pred             HHHHHHHHHHH
Q ss_conf             68999939998
Q 029699           91 DNCQILQTRVN  101 (189)
Q Consensus        91 ~NLq~LC~~CN  101 (189)
                      +||.++-..-|
T Consensus       114 DNLrI~TPK~H  124 (130)
T d2gykb1         114 DNIRVTTPKRH  124 (130)
T ss_dssp             GGEEEECHHHH
T ss_pred             CCEEECCCHHH
T ss_conf             66055380746

>d2jb0b1 d.4.1.1 (B:449-572) DNase domain of colicin E7 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: His-Me finger endonucleases
superfamily: His-Me finger endonucleases
family: HNH-motif
domain: DNase domain of colicin E7
species: Escherichia coli [TaxId: 562]

Probab=89.99  E-value=0.014  Score=30.47  Aligned_cols=75  Identities=19%  Similarity=0.311  Sum_probs=43.9

Q ss_pred             CCCCCCCC--HHHHHHHHHHCCCCCCCCCCCHHCCCCCCEEEECCCCCCCC---------CCCCCCEEEECCCCCC-CHH
Q ss_conf             88889887--88999999871899999951022013577375069987888---------8772113675369999-907
Q 029699           23 EERPRYFD--GKAKSMCWAKAETVPGRHPERWRKDAAGNIVCKRFCNCHGC---------LCFEYDHIVPFSKGGE-STA   90 (189)
Q Consensus        23 ~~~~R~f~--~~~R~~~w~ka~~v~Gr~~~r~R~da~gnvv~r~~~~C~~C---------~~~evDHIiP~s~GG~-~~~   90 (189)
                      +.+-|.|.  .+-|++.|....    .+|+...+-.-.|...-..+.-++-         ..||++|++|.+.||. -++
T Consensus        35 kLrGr~F~sFd~FR~afW~~Va----~DpeL~~QF~~~N~~rmk~G~AP~a~~~e~vG~r~kfElHH~~~I~~GG~VYdi  110 (124)
T d2jb0b1          35 KLRDKEFKSFDDFRKKFWEEVS----KDPELSKQFSRNNNDRMKVGKAPKTRTQDVSGKRTSFELHHEKPISQNGGVYDM  110 (124)
T ss_dssp             HHTTCEESSHHHHHHHHHHHHH----HCHHHHTTSCHHHHHHHHTTCCCBCCGGGCBTTBCBCEEEESSCCC--CCSSBG
T ss_pred             HHCCCCCCCHHHHHHHHHHHHH----CCHHHHHHHCHHHHHHHHCCCCCCCCHHHHCCCEEEEEECCCCCCCCCCEEEEC
T ss_conf             8658857888899999999981----099999985888899986889998972465088637994267432469845535


Q ss_pred             HHHHHHHHHHH
Q ss_conf             68999939998
Q 029699           91 DNCQILQTRVN  101 (189)
Q Consensus        91 ~NLq~LC~~CN  101 (189)
                      +||.++-..-|
T Consensus       111 DNLrI~TPK~H  121 (124)
T d2jb0b1         111 DNISVVTPKRH  121 (124)
T ss_dssp             GGEEEECHHHH
T ss_pred             CCEEECCCCCC
T ss_conf             66156384101