Citrus Sinensis ID: 029706

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEVCYTHSSFCFIYVFDVIALCIY
Secondary Structure (PSIPRED)
cccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccHHcccccccccccccccccEEEEccccccEEEccEEEEccccEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccEccccccccccccccccccccHcccccccccccccHHHHHHcHHcccccccccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MDGREAMVasggvsgpyyiqqhrgafsgshsatqsglmqtppgfrsssnlniptqpnvgstfavepkhvnfghnmsvpsgvplsdpvkkkrgrprkyapdgqvslglsplparpkrspasdsqalkrsrgrppgtgrKQQLATLGEwmnssagiafaphvisigvgevcythssfCFIYVFDVIALCIY
Flexible Loop (DISEMBL)
MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFghnmsvpsgvplsdpvKKKRgrprkyapdgqvslglsplparpkrspasdsqalkrsrgrppgtgRKQQLATLGEWMNSSAGIAFAPHVISIGVGEVCYTHSSFCFIYVFDVIALCIY
Low Complexity Region (SEG)
MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEVCYTHSSFCFIYVFDVIALCIY
Disordered region (IsUnstruct)
**********************************************************************************************************************************************TLGEWMNSSAGIAFAPHVISIGVGEVCYTHSSFCFIYVFDVIALCI*
Disordered Region (DISOPRED)
*****************************************************************************************************************************************************SSAGIAFAPHVISIGVGEVCYTHSSFCFIYVFDVIALCIY
Disordered Region (DISEMBL)
*********SGGVSGPYYIQQHRGA*************QTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFGHNMSVPSGVPLSD************APDGQVSLGLSPL****************************QQLATLGEWMNSSAGIAFAPHVISIGVGEVCYTHSSFCFIYVFDVIALCIY
Disordered Region (DISPRO)
**************GPYY**QHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGSTFAVEPKH*NF*H****P*GVPLSDPVKKKRGRPRKYAPDGQVSLGL******************************KQQLATLGEWMNSSAGIAFAPHVISIGVGEVCYTHSSFCFIYVFDVIALCIY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEVCYTHSSFCFIYVFDVIALCIY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
225426407	346	PREDICTED: uncharacterized protein LOC10	0.883	0.482	0.624	2e-47
255537455	347	DNA binding protein, putative [Ricinus c	0.873	0.475	0.603	2e-46
224053919	343	predicted protein [Populus trichocarpa]	0.846	0.466	0.605	3e-40
224074919	346	predicted protein [Populus trichocarpa]	0.867	0.473	0.571	3e-39
356540448	352	PREDICTED: uncharacterized protein LOC10	0.841	0.451	0.564	2e-38
297742528	309	unnamed protein product [Vitis vinifera]	0.735	0.449	0.557	4e-37
356528260	352	PREDICTED: uncharacterized protein LOC10	0.830	0.446	0.510	4e-36
356513399	352	PREDICTED: uncharacterized protein LOC10	0.830	0.446	0.505	7e-35
356497236	357	PREDICTED: uncharacterized protein LOC10	0.841	0.445	0.513	3e-33
2213534	334	DNA-binding PD1-like protein [Pisum sati	0.857	0.485	0.547	2e-32

>gi|225426407|ref|XP_002273061.1| PREDICTED: uncharacterized protein LOC100249560 [Vitis vinifera]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 113/181 (62%), Positives = 124/181 (68%), Gaps = 14/181 (7%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAF---SGSHSATQSGLMQTPPGFRSSSNLNIPTQPN 57
           MDGREAM  SG  S PYYI  HRG     S S S   SG +  PPGFR  SN  IP Q N
Sbjct: 1   MDGREAMALSG--SPPYYI--HRGVVGSASLSGSGIHSGGLHAPPGFRPLSNPGIPVQSN 56

Query: 58  V-----GSTFAVEPKHVNFGH--NMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPL 110
           V     G TF+V+    NF H  NM+VPSGVP ++PVK+KRGRPRKY PDG VSLGLSP+
Sbjct: 57  VRNNSVGQTFSVDHSQTNFPHGFNMAVPSGVPPAEPVKRKRGRPRKYGPDGNVSLGLSPM 116

Query: 111 PARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEVCY 170
            ARP     S +   KR RGRPPGTGRKQQLATLGEWMNSSAG+AFAPHVIS+ VGE   
Sbjct: 117 SARPSLGSGSVTPTQKRGRGRPPGTGRKQQLATLGEWMNSSAGLAFAPHVISMAVGEDIA 176

Query: 171 T 171
           T
Sbjct: 177 T 177

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537455|ref|XP_002509794.1| DNA binding protein, putative [Ricinus communis] gi|223549693|gb|EEF51181.1| DNA binding protein, putative [Ricinus communis]

 Score =  190 bits (483), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 105/174 (60%), Positives = 125/174 (71%), Gaps = 9/174 (5%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNV-- 58
           MDGREAM  + G S PYYI +  G       +   G   +PPGFR  +N N+    N   
Sbjct: 1   MDGREAMALASG-STPYYIHRGGGVGGSGSGSQAGGF-HSPPGFRPLANPNLLAHSNTRP 58

Query: 59  ---GSTFAVEPKHVNFGH--NMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPAR 113
              GS+F++EP ++NF H  N++VPSG+P+ +PVKKKRGRPRKYAPDGQVSLGLSPLP +
Sbjct: 59  GSSGSSFSIEPSNINFVHGMNVAVPSGLPVGEPVKKKRGRPRKYAPDGQVSLGLSPLPVK 118

Query: 114 PKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGE 167
           PK S   D  + KR+RGRPPGTGRKQQLA LGEWMNSSAGIAF+PHVI IGVGE
Sbjct: 119 PKPSSGQDPLSPKRARGRPPGTGRKQQLALLGEWMNSSAGIAFSPHVIRIGVGE 172

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053919|ref|XP_002298038.1| predicted protein [Populus trichocarpa] gi|222845296|gb|EEE82843.1| predicted protein [Populus trichocarpa]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 106/175 (60%), Positives = 122/175 (69%), Gaps = 15/175 (8%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGA-FSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNV- 58
           MDGREAM  S G S PY+I  HRG+ F G    +Q G+   PPGFRS SN  +  Q NV 
Sbjct: 1   MDGREAMPFSSG-SSPYHI--HRGSGFLGPGYGSQHGVSHPPPGFRSLSNPQLAAQSNVR 57

Query: 59  -GST---FAVEPKHVNFGH--NMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPA 112
            GST   F++EP  VNFGH  NM+  S V + +PVKKKRGRPRKY   GQVSLGLSPLP 
Sbjct: 58  SGSTVPAFSIEPPDVNFGHGINMAATSEVQVGEPVKKKRGRPRKYGLVGQVSLGLSPLPN 117

Query: 113 RPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGE 167
           +PK S   DS   KR+RGRPPG+GRKQQLATLG    +SAG+AF+PHVISI VGE
Sbjct: 118 KPKPSSGEDSSTSKRNRGRPPGSGRKQQLATLG----NSAGVAFSPHVISIEVGE 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074919|ref|XP_002304491.1| predicted protein [Populus trichocarpa] gi|222841923|gb|EEE79470.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/175 (57%), Positives = 120/175 (68%), Gaps = 11/175 (6%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSAT-QSGLMQTPPGFRSSSNLNIPTQPNV- 58
           MDGRE M    G S  YYI  HRG+      +  Q   +  P GFRS S+ ++ +Q NV 
Sbjct: 1   MDGRETMAFPSGSSS-YYI--HRGSGILGSGSGSQHDPLHPPTGFRSLSSPHLASQSNVR 57

Query: 59  -GST---FAVEPKHVNFGH--NMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPA 112
            GS+   F++EP + NFGH  NM+  S V + +PVKKKRGRPRKY  DGQVSLGLS  P 
Sbjct: 58  PGSSAPAFSIEPPNANFGHGINMAATSEVQVGEPVKKKRGRPRKYGLDGQVSLGLSSFPD 117

Query: 113 RPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGE 167
           + K S   DS   KR+RGRPPG+GRKQQLATLGEWMNSSAG+AF+PHV+SIGVGE
Sbjct: 118 KAKPSSGEDSSTSKRNRGRPPGSGRKQQLATLGEWMNSSAGLAFSPHVVSIGVGE 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540448|ref|XP_003538701.1| PREDICTED: uncharacterized protein LOC100790569 [Glycine max]

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/179 (56%), Positives = 120/179 (67%), Gaps = 20/179 (11%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSA---TQSGLMQTPPGFRSSSNLNIPTQPN 57
           MDGRE M   GG S PYY+Q HRG   G       TQSG  Q P GFR+ SN++      
Sbjct: 1   MDGREGMAFPGG-SAPYYMQ-HRGGGVGGSVPGTGTQSGGFQPPSGFRALSNVS------ 52

Query: 58  VGSTFAVE--PKHVNFGHNMSVPS------GVPLS-DPVKKKRGRPRKYAPDGQVSLGLS 108
            GS F VE  P+H +F H ++  S      GVP S +PVKKKRGRPRKY PDG VSL LS
Sbjct: 53  PGSAFKVESQPQHASFSHGINTGSSPDGGSGVPSSGEPVKKKRGRPRKYGPDGSVSLMLS 112

Query: 109 PLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGE 167
           P+ A    +P S + + KR RGRPPG+GRKQQLATLGEWMN+SAG+AF+PHVI++GVGE
Sbjct: 113 PMSATANSTPGSGTSSEKRPRGRPPGSGRKQQLATLGEWMNNSAGLAFSPHVITVGVGE 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742528|emb|CBI34677.3| unnamed protein product [Vitis vinifera]

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/174 (55%), Positives = 108/174 (62%), Gaps = 35/174 (20%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGS 60
           MDGREAM  SG  S PYYI  HRG      SA+ SG                        
Sbjct: 1   MDGREAMALSG--SPPYYI--HRGVVG---SASLSG------------------------ 29

Query: 61  TFAVEPKHVNFGH--NMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKRSP 118
             +V+    NF H  NM+VPSGVP ++PVK+KRGRPRKY PDG VSLGLSP+ ARP    
Sbjct: 30  --SVDHSQTNFPHGFNMAVPSGVPPAEPVKRKRGRPRKYGPDGNVSLGLSPMSARPSLGS 87

Query: 119 ASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEVCYTH 172
            S +   KR RGRPPGTGRKQQLATLGEWMNSSAG+AFAPHVIS+ VGE   T 
Sbjct: 88  GSVTPTQKRGRGRPPGTGRKQQLATLGEWMNSSAGLAFAPHVISMAVGEDIATR 141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528260|ref|XP_003532722.1| PREDICTED: uncharacterized protein LOC100813888 [Glycine max]

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/184 (51%), Positives = 113/184 (61%), Gaps = 27/184 (14%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNVGS 60
           MDGREAM  SG  S PYY+  HR    GS S       +  PGFR  SN  I  + N   
Sbjct: 1   MDGREAMAFSGS-SAPYYM--HRVGIGGSASG-----FEPAPGFRPLSNTGIQAESNARG 52

Query: 61  T-------------FAVEP--KHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSL 105
                         F+VEP   H NF H + +  G P S+PVKKKRGRPRKY PDG VSL
Sbjct: 53  GQGQGGGSVGSSSPFSVEPPQGHTNFNHGIGI--GAPSSEPVKKKRGRPRKYGPDGAVSL 110

Query: 106 GLSPL--PARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISI 163
            LSP+  PA   +  +  + + K++RGRPPG+GRKQQLA LGEWMNSSAG+AF+PHV++I
Sbjct: 111 RLSPMSAPANSTQDASETTPSQKKARGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVVTI 170

Query: 164 GVGE 167
           GVGE
Sbjct: 171 GVGE 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513399|ref|XP_003525401.1| PREDICTED: uncharacterized protein LOC100798706 [Glycine max]

 Score =  152 bits (384), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/184 (50%), Positives = 110/184 (59%), Gaps = 27/184 (14%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNV-- 58
           MDGREAM  S G S PYY+  HR               Q  PGFR  SN  I  + N   
Sbjct: 1   MDGREAMAFSDG-SAPYYM--HR-----VGVGGSGSGFQPAPGFRPLSNTGIQAESNARG 52

Query: 59  -----------GSTFAVEP--KHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSL 105
                       S F+VEP   H NF H + +  G P  +PVKKKRGRPRKY PDG VSL
Sbjct: 53  GQGQGGGSVGSNSPFSVEPPQGHANFNHGIGI--GAPSREPVKKKRGRPRKYGPDGAVSL 110

Query: 106 GLSPL--PARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISI 163
            LSP+  PA   +  +  + + K++RGRPPG+GRKQQLA LGEWMNSSAG+AF+PHVI+I
Sbjct: 111 RLSPMSAPANSTQDASETTPSQKKARGRPPGSGRKQQLAALGEWMNSSAGLAFSPHVITI 170

Query: 164 GVGE 167
           GVGE
Sbjct: 171 GVGE 174

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497236|ref|XP_003517468.1| PREDICTED: uncharacterized protein LOC100795781 [Glycine max]

 Score =  146 bits (369), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/187 (51%), Positives = 115/187 (61%), Gaps = 28/187 (14%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSA---TQSGLMQTPPGFRSSSNLNIPTQPN 57
           MDGRE M   GG S PYY+Q HRG           TQSG  Q P GFR+ SN++      
Sbjct: 1   MDGREGMAFPGG-SVPYYMQ-HRGGGVSGSGPGTGTQSGGFQPPSGFRALSNVS------ 52

Query: 58  VGSTFAVE----------PKHVNFGHNMSVPSGVPLS-------DPVKKKRGRPRKYAPD 100
            GS F VE          P+H +F H +++ S            +PVKKKRGRPRKY PD
Sbjct: 53  PGSAFKVESHSYSHSQSQPQHASFSHGINIGSSPDGGGGGPSSGEPVKKKRGRPRKYGPD 112

Query: 101 GQVSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHV 160
           G VSL LSP+ A    +P S + + KR RGRPPG+GRKQQLATLGEWMNSSAG+AF+PHV
Sbjct: 113 GSVSLMLSPMSATASSTPGSGTSSEKRPRGRPPGSGRKQQLATLGEWMNSSAGLAFSPHV 172

Query: 161 ISIGVGE 167
           I++GV E
Sbjct: 173 ITVGVDE 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2213534|emb|CAA67291.1| DNA-binding PD1-like protein [Pisum sativum]

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/179 (54%), Positives = 117/179 (65%), Gaps = 17/179 (9%)

Query: 1   MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPTQPNV-- 58
           MDGREAM  SGG  G YY+  HRG    + S   SG  Q PPGFR+  N  I  QPNV  
Sbjct: 1   MDGREAMAFSGG-PGSYYL--HRGGVEAAGSG--SGGFQVPPGFRALPNNGIIAQPNVRA 55

Query: 59  -------GSTFAVEPK-HVNFGHNMSV--PSGVPLSDPVKKKRGRPRKYAPDGQVSLGLS 108
                   S F++EP+ H +F H++SV   SG P S+PVKKKRGRPRKY PDG VSL LS
Sbjct: 56  QGGNGDTSSMFSLEPQSHADFNHDISVGASSGAPSSEPVKKKRGRPRKYGPDGSVSLKLS 115

Query: 109 PLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGE 167
           P+ A    +  S + + KR RGRP G+GRKQQLA LG+WM SSAG+AF+PHVI+I  GE
Sbjct: 116 PMSAPANSTQDSGTPSEKRGRGRPRGSGRKQQLAALGDWMTSSAGLAFSPHVITIAAGE 174

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
TAIR|locus:2031321	378	AT1G63470 [Arabidopsis thalian	0.455	0.227	0.714	3.6e-40
TAIR|locus:2031306	361	AT1G63480 [Arabidopsis thalian	0.820	0.429	0.491	2.7e-29
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.825	0.448	0.434	3.6e-25
TAIR|locus:2098861	354	AT3G61310 [Arabidopsis thalian	0.830	0.443	0.416	6.3e-21
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.841	0.452	0.346	3.2e-15
TAIR|locus:2178505	386	AT5G46640 [Arabidopsis thalian	0.391	0.191	0.448	2e-12
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.507	0.229	0.411	1.1e-11
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.439	0.248	0.421	4.8e-11
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.682	0.362	0.326	7.3e-11
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.851	0.398	0.278	7.3e-10

TAIR|locus:2031321 AT1G63470 [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
 Identities = 65/91 (71%), Positives = 72/91 (79%)

Query:    82 PLSDP-VKKKRGRPRKYAPDGQVSLGLSPLPARPKRSP----ASDSQALKRSRGRPPGTG 136
             P   P VKKKRGRPRKY PDGQVSLGLSP+P   K+S      SD  A KR+RGRPPGTG
Sbjct:    98 PSEQPMVKKKRGRPRKYVPDGQVSLGLSPMPCVSKKSKDSSSMSDPNAPKRARGRPPGTG 157

Query:   137 RKQQLATLGEWMNSSAGIAFAPHVISIGVGE 167
             RKQ+LA LGEWMN+SAG+AFAPHVIS+G GE
Sbjct:   158 RKQRLANLGEWMNTSAGLAFAPHVISVGSGE 188

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000280 "nuclear division" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007000 "nucleolus organization" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016246 "RNA interference" evidence=RCA

GO:0016458 "gene silencing" evidence=RCA

GO:0016570 "histone modification" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0031047 "gene silencing by RNA" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0048449 "floral organ formation" evidence=RCA

GO:0051225 "spindle assembly" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2031306 AT1G63480 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 90/183 (49%), Positives = 105/183 (57%)

Query:     1 MDGREAMVASGGVSGPYYIQQHRGAFSG-SHSATQSGLMQTPP--GFRSSSNLNI--PTQ 55
             MDGREAM   G  S  YY+Q  RGAF+  + S   SGL   PP  G R  SN NI  P  
Sbjct:     1 MDGREAMAFPGSHS-QYYLQ--RGAFTNLAPSQVASGLHAPPPHTGLRPMSNPNIHHPQA 57

Query:    56 PNVGSTFAVEPKHVNFGHNMSV--------PSGVPLSDP-VKKKRGRPRKYAPDGQVSLG 106
              N G  F+     ++ G   S         P   P  +P VK+KRGRPRKY   G+    
Sbjct:    58 NNPGPPFSDFGHTIHMGVVSSASDADVQPPPPPPPPEEPMVKRKRGRPRKY---GE---- 110

Query:   107 LSPLPARPKR--SPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIG 164
               P+ +   R  SP SD    KR+RGRPPGTGRKQ+LA LGEWMN+SAG+AFAPHVISIG
Sbjct:   111 --PMVSNKSRDSSPMSDPNEPKRARGRPPGTGRKQRLANLGEWMNTSAGLAFAPHVISIG 168

Query:   165 VGE 167
              GE
Sbjct:   169 AGE 171

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 80/184 (43%), Positives = 102/184 (55%)

Query:     1 MDGREAMVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPPGFRSSSNLNIPT------ 54
             MD R+AM  SG  SG YYI  HRG  SGS   T  G  Q   G R   N N P       
Sbjct:     1 MDRRDAMGLSG--SGSYYI--HRG-LSGSGPPTFHGSPQQQQGLRHLPNQNSPFGSGSTG 55

Query:    55 --QPNV-G----STFA----VEPKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQV 103
                P++ G    +T A      P H+  G NM  P   P   P+K+KRGRPRKY  DG V
Sbjct:    56 FGSPSLHGDPSLATAAGGAGALPHHI--GVNMIAPPPPPSETPMKRKRGRPRKYGQDGSV 113

Query:   104 SLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISI 163
             SL LS        S  + + + KR RGRPPG+G+KQ++A++GE M SS+G++F PHVI++
Sbjct:   114 SLALSSSSV----STITPNNSNKRGRGRPPGSGKKQRMASVGELMPSSSGMSFTPHVIAV 169

Query:   164 GVGE 167
              +GE
Sbjct:   170 SIGE 173

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2098861 AT3G61310 [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 77/185 (41%), Positives = 98/185 (52%)

Query:     1 MDGREAMVASGGVSGPYYIQQHRGA-FSGSHSATQSGLMQTPPGFRSSSNLNIP------ 53
             MD R+AM  SG  SG YYIQ  RG   SG              GF   +N   P      
Sbjct:     1 MDRRDAMALSG--SGSYYIQ--RGIPGSGPPPPQTQPTFHGSQGFHHFTNSISPFGSNPN 56

Query:    54 TQPNVG--ST-FAVEPKHVNFG--HNMSVPSGVPLSDP-----VKKKRGRPRKYAPDG-Q 102
               PN G  ST F   P  V+     + +  +G  ++ P     VK+KRGRPRKY  DG  
Sbjct:    57 PNPNPGGVSTGFVSPPLPVDSSPADSSAAAAGALVAPPSGDTSVKRKRGRPRKYGQDGGS 116

Query:   103 VSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVIS 162
             VSL LSP  +    SP S+    KR RGRPPG+G+KQ+L+++GE M SS G++F PHVI 
Sbjct:   117 VSLALSPSISNV--SPNSN----KRGRGRPPGSGKKQRLSSIGEMMPSSTGMSFTPHVIV 170

Query:   163 IGVGE 167
             + +GE
Sbjct:   171 VSIGE 175

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 63/182 (34%), Positives = 89/182 (48%)

Query:     1 MDGREA-MVASGGVSGPYYIQQHRGAFSGSHSATQSGLMQTPP-GFRSSSNLNIPTQP-- 56
             M G E  ++A+   S  + +  H+      HS  Q    Q  P  F       +  QP  
Sbjct:     1 MSGSETGLMAATRESMQFTMALHQ---QQQHSQAQPQQSQNRPLSFGGDDGTALYKQPMR 57

Query:    57 NVGSTFAVEPKHV--NFGHNMSVPSGVPL------SDPVKKKRGRPRKYAPD-GQVSLGL 107
             +V      +P     N   NM++P G         S+PVKK+RGRPRKY PD G++SLGL
Sbjct:    58 SVSPPQQYQPNSAGENSVLNMNLPGGESGGMTGTGSEPVKKRRGRPRKYGPDSGEMSLGL 117

Query:   108 SP-LPARPKRSPASDSQALKRSRGRPPGTGRKQ-QLATLGEWMNSSAGIAFAPHVISIGV 165
             +P  P+     P+S     ++ RGRPPG+  K+ +L  LG     S GI F PHV+++  
Sbjct:   118 NPGAPSFTVSQPSSGGDGGEKKRGRPPGSSSKRLKLQALG-----STGIGFTPHVLTVLA 172

Query:   166 GE 167
             GE
Sbjct:   173 GE 174

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2178505 AT5G46640 [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 44/98 (44%), Positives = 56/98 (57%)

Query:    87 VKKKRGRPRKYAPDGQVSLGLSPLPARPKRSPASDSQA-----------------LKRSR 129
             VKKKRGRPRKY PDG ++LGL+P    P  S AS+S                   +KR+R
Sbjct:   101 VKKKRGRPRKYTPDGSIALGLAP--TSPLLSAASNSYGEGGVGDSGGNGNSVDPPVKRNR 158

Query:   130 GRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGE 167
             GRPPG+ +KQ L  LG     ++G+ F PHVI +  GE
Sbjct:   159 GRPPGSSKKQ-LDALG----GTSGVGFTPHVIEVNTGE 191

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
 Identities = 42/102 (41%), Positives = 54/102 (52%)

Query:    41 PPGFRS-SSNLNI-PT-QPNVGSTFA-VEPKHVNFGHNMSVPSGVP-LSDPVKKKRGRPR 95
             PPG+   S N N+ P  Q +  S  A V+P   N     S+   V   S  +KKKRGRPR
Sbjct:    27 PPGYPPRSENPNLFPVGQSSTSSAAAAVKPSE-NVAPPFSLTMPVENSSSELKKKRGRPR 85

Query:    96 KYAPDGQVSLGLSPLPARPKRSPASDSQALKRSRGRPPGTGR 137
             KY PDG +++ LSP+P        S+  + KR RGR  G GR
Sbjct:    86 KYNPDGSLAVTLSPMPISSSVPLTSEFGSRKRGRGRGRGRGR 127

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 4.8e-11, P = 4.8e-11
 Identities = 40/95 (42%), Positives = 49/95 (51%)

Query:    84 SDPVKKKRGRPRKYAPDGQVSLGLSPLP---ARPKRSPASDSQALKRSRGR-PPGTGR-- 137
             S P+KK+RGRPRKY  DG  ++ LSP P   A P  S   D       RG+  P T    
Sbjct:    68 SGPIKKRRGRPRKYGHDG-AAVTLSPNPISSAAPTTSHVIDFSTTSEKRGKMKPATPTPS 126

Query:   138 -----KQQLATLGEWMNSSAGIAFAPHVISIGVGE 167
                  K Q+  LGEW  SSA   F PH+I++  GE
Sbjct:   127 SFIRPKYQVENLGEWSPSSAAANFTPHIITVNAGE 161

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 7.3e-11, P = 7.3e-11
 Identities = 50/153 (32%), Positives = 68/153 (44%)

Query:    29 SHSATQSGLMQTPPGFRSSSNLNIPTQPNVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVK 88
             S S+ QS    TPP  + SS+   P    + +           G    +  G+     +K
Sbjct:    39 SESSNQSPTSVTPPPPQPSSHHTAPPPLQISTVTTTTTTAAMEG----ISGGL-----MK 89

Query:    89 KKRGRPRKYAPDGQVSLGLSPLPAR----PKRSPASDSQAL------KRSRGRPPGTGRK 138
             KKRGRPRKY PDG V + LSP P      P   P   S  +      KRS+ +P  +  +
Sbjct:    90 KKRGRPRKYGPDGTV-VALSPKPISSAPAPSHLPPPSSHVIDFSASEKRSKVKPTNSFNR 148

Query:   139 ----QQLATLGEWMNSSAGIAFAPHVISIGVGE 167
                  Q+  LGEW   S G  F PH+I++  GE
Sbjct:   149 TKYHHQVENLGEWAPCSVGGNFTPHIITVNTGE 181

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 7.3e-10, P = 7.3e-10
 Identities = 51/183 (27%), Positives = 80/183 (43%)

Query:     1 MDGREAMVASGGVSGPYYI-QQHRGAFS-GSHSATQSGLMQTPPGFRSSSNLNIP--TQP 56
             M+ RE    +  ++  + + QQH  A S G +S      M  PP   + +   +P  T P
Sbjct:     1 MEEREGTNINNNITSSFGLKQQHEAAASDGGYS------MDPPPRPENPNPFLVPPTTVP 54

Query:    57 NVGSTFAVEPKHVNFGHNMSVPSGVPLSDPVKKKRGRPRKYAPDGQVSLGLSPLPARPKR 116
                +  A   ++     ++++P+    ++ +KKKRGRPRKY PDG + + LSP+P     
Sbjct:    55 AAATVAAAVTENAATPFSLTMPTENTSAEQLKKKRGRPRKYNPDGTLVVTLSPMPISSSV 114

Query:   117 SPASDSQALKRSRGRPPGTG--RKQQLATL----------GEWMNSSAGIAFAPHVISIG 164
                S+    KR RGR       +K Q+             G       G  F PHV+ + 
Sbjct:   115 PLTSEFPPRKRGRGRGKSNRWLKKSQMFQFDRSPVDTNLAGVGTADFVGANFTPHVLIVN 174

Query:   165 VGE 167
              GE
Sbjct:   175 AGE 177

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	96.75
smart00384	26	AT_hook DNA binding domain with preference for A/T	96.68
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	89.01
PF13546	273	DDE_5: DDE superfamily endonuclease	86.14
COG1710	139	Uncharacterized protein conserved in archaea [Func	80.7

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=96.75  E-value=0.00048  Score=36.13  Aligned_cols=12  Identities=75%  Similarity=1.138  Sum_probs=4.4

Q ss_pred             ccccCCCCCCCC
Q 029706           88 KKKRGRPRKYAP   99 (189)
Q Consensus        88 KKKRGRPRKYgp   99 (189)
                      +|+||||+|+..
T Consensus         1 ~r~RGRP~k~~~   12 (13)
T PF02178_consen    1 KRKRGRPRKNAK   12 (13)
T ss_dssp             S--SS--TT---
T ss_pred             CCcCCCCccccC
Confidence            689999999865

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=96.68  E-value=0.00083  Score=41.24  Aligned_cols=15  Identities=60%  Similarity=0.933  Sum_probs=13.2

Q ss_pred             ccccCCCCCCCCCCC
Q 029706           88 KKKRGRPRKYAPDGQ  102 (189)
Q Consensus        88 KKKRGRPRKYgpDG~  102 (189)
                      |||||||||+..+..
T Consensus         1 kRkRGRPrK~~~~~~   15 (26)
T smart00384        1 KRKRGRPRKAPKDXX   15 (26)
T ss_pred             CCCCCCCCCCCCccc
Confidence            699999999998864

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=89.01  E-value=0.14  Score=44.44  Aligned_cols=16  Identities=56%  Similarity=0.918  Sum_probs=12.3

Q ss_pred             ccccccCCCCC-CCCCC
Q 029706           86 PVKKKRGRPRK-YAPDG  101 (189)
Q Consensus        86 ~~KKKRGRPRK-YgpDG  101 (189)
                      ..||||||||| -|-.+
T Consensus        66 dAKRKRGRPRKKsggsg   82 (219)
T PF14621_consen   66 DAKRKRGRPRKKSGGSG   82 (219)
T ss_pred             hhhhhcCCCccCCCCCc
Confidence            58999999995 45444

>PF13546 DDE_5: DDE superfamily endonuclease

Probab=86.14  E-value=0.41  Score=40.57  Aligned_cols=16  Identities=56%  Similarity=0.951  Sum_probs=12.2

Q ss_pred             cccccccCCCCCCCCC
Q 029706           85 DPVKKKRGRPRKYAPD  100 (189)
Q Consensus        85 e~~KKKRGRPRKYgpD  100 (189)
                      .+..+|||||||||.-
T Consensus       228 ~~~~~~rGRPr~~g~~  243 (273)
T PF13546_consen  228 PPPPPKRGRPRKYGRR  243 (273)
T ss_pred             cccCCCCCCCCCCCCc
Confidence            3455559999999965

>COG1710 Uncharacterized protein conserved in archaea [Function unknown]

Probab=80.70  E-value=0.73  Score=37.85  Aligned_cols=16  Identities=69%  Similarity=1.099  Sum_probs=13.5

Q ss_pred             cccc-cccCCCCCCCCC
Q 029706           85 DPVK-KKRGRPRKYAPD  100 (189)
Q Consensus        85 e~~K-KKRGRPRKYgpD  100 (189)
                      -|+| |-|||||||.-.
T Consensus        81 IPvk~KgrGrprkyd~~   97 (139)
T COG1710          81 IPVKLKGRGRPRKYDRN   97 (139)
T ss_pred             eeeeecCCCCCcccchh
Confidence            4778 889999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00