Citrus Sinensis ID: 029712

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MLLFSFSVCNCDSHSFVVKRFVLTSWMQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESSTSGAEPSSSGASEYIFS
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHcccEEEEEEcccccEEcccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEccccccHHEEHHHccccHHHHccccHHHHHHHHHHcccEEEEEEccccEEEEccccccccccEEEEEEcccEEcEEEcccccEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
mllfsfsvcncdshsfvVKRFVLTSWMQVYGNNVEIQALCEmynrpihiysyttepinifhgsyntdnppirlsyhhgnhynslvdprrmtvgaglgfsclrgtnvdKDQVKAAIKAQQDQQIDNALLaegrfysdlelTEKEIECMVMEVSRAeylagdnlkqqlghkesstsgaepsssgaseyifs
Flexible Loop (DISEMBL)
MLLFSFSvcncdshsFVVKRFVLTSWMQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLghkesstsgaepsssgaseyifs
Low Complexity Region (SEG)
MLLFSFSVCNCDSHSFVVKRFVLTSWMQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNvdkdqvkaaikaqqdqqidNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKesstsgaepsssgaseYIFS
Disordered region (IsUnstruct)
*LLFSFSVCNCDSHSFVVKRFVLTSWMQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLA*******************************
Disordered Region (DISOPRED)
*LLFSFSVCNCDSHSFVVKRFVLTSWMQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGS*NTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNV************************************EIECMVMEVSRAE**********************************
Disordered Region (DISEMBL)
MLLFSFSVCNCDSHSFVVKRFVLTSWMQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQ*************************
Disordered Region (DISPRO)
MLLFSFSVCNCDSHSFVVKRFVLTSWMQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNL***************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLLFSFSVCNCDSHSFVVKRFVLTSWMQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESSTSGAEPSSSGASEYIFS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
Q3U2S4	566	OTU domain-containing pro	yes	no	0.708	0.236	0.407	2e-26
Q2YDU3	566	OTU domain-containing pro	no	no	0.708	0.236	0.407	3e-26
Q640H3	518	OTU domain-containing pro	N/A	no	0.708	0.258	0.4	5e-26
Q08BW0	560	OTU domain-containing pro	no	no	0.708	0.239	0.407	1e-25
Q6GL44	518	OTU domain-containing pro	yes	no	0.708	0.258	0.4	2e-25
Q7ZX21	513	OTU domain-containing pro	N/A	no	0.661	0.243	0.406	2e-25
Q96G74	571	OTU domain-containing pro	no	no	0.708	0.234	0.392	2e-24

>sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5 OS=Mus musculus GN=Otud5 PE=1 SV=2

 Score =  118 bits (295), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 30  YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
           +GN++E+QA+ EMYNRP+ +Y Y+TEPIN FHG +  ++ PIR+SYH   HYNS+V+P +
Sbjct: 279 HGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNK 338

Query: 90  MTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVM 149
            T+G GLG    +    ++  +K AIK  ++  I+  +L + +  +D E T + IE  V 
Sbjct: 339 ATIGVGLGLPSFKPGFAEQSLMKNAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 398

Query: 150 EVSRAEYLAGDNLKQ 164
             S  ++L  D  KQ
Sbjct: 399 RESYLQWLR-DQEKQ 412

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q2YDU3|OTUD5_RAT OTU domain-containing protein 5 OS=Rattus norvegicus GN=Otud5 PE=2 SV=2

 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 30  YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
           +GN++E+QA+ EMYNRP+ +Y Y+TEPIN FHG +  ++ PIR+SYH   HYNS+V+P +
Sbjct: 279 HGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNK 338

Query: 90  MTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVM 149
            T+G GLG    +    ++  +K AIK  ++  I+  +L + +  +D E T + IE  V 
Sbjct: 339 ATIGVGLGLPSFKPGFAEQSLMKNAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 398

Query: 150 EVSRAEYLAGDNLKQ 164
             S  ++L  D  KQ
Sbjct: 399 RESYLQWLR-DQEKQ 412

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q640H3|OTU5B_XENLA OTU domain-containing protein 5-B OS=Xenopus laevis GN=otud5-b PE=2 SV=1

 Score =  117 bits (292), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 85/135 (62%), Gaps = 1/135 (0%)

Query: 30  YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
           +GN++E+QA+ EMYNRP+ +Y Y TEPIN FHG    ++ PIR+SYH   HYNS+V+P +
Sbjct: 237 HGNHIEMQAMAEMYNRPVEVYQYGTEPINTFHGIQQNEDEPIRVSYHRNIHYNSVVNPNK 296

Query: 90  MTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVM 149
            T+G GLG    +  + ++  +K+AI+  ++  I+  +L + +  +D E T + IE  V 
Sbjct: 297 ATIGVGLGLPSFKPGHAEQSLMKSAIRTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 356

Query: 150 EVSRAEYLAGDNLKQ 164
             S  ++L  D  KQ
Sbjct: 357 RESYLQWLR-DQEKQ 370

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A OS=Danio rerio GN=otud5a PE=2 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 1/135 (0%)

Query: 30  YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
           +GN++E+QA+ EMYNRP+ +Y   TEPIN FHG +  ++ PIR+SYH   HYNS+V+P +
Sbjct: 277 HGNHIEMQAMAEMYNRPVEVYQSGTEPINTFHGIHQNNDEPIRVSYHRNIHYNSVVNPNK 336

Query: 90  MTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVM 149
            T+G GLG    +    D+  +K AIK  ++  I+  +L + +  +D E T + IE  V 
Sbjct: 337 ATIGVGLGLPAFKPGFADQSLMKNAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 396

Query: 150 EVSRAEYLAGDNLKQ 164
             S  ++L  D  KQ
Sbjct: 397 RESYLQWLR-DQEKQ 410

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q6GL44|OTUD5_XENTR OTU domain-containing protein 5 OS=Xenopus tropicalis GN=otud5 PE=2 SV=1

 Score =  115 bits (288), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/135 (40%), Positives = 84/135 (62%), Gaps = 1/135 (0%)

Query: 30  YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
           +GN++E+QA+ EMYNRP+ +Y Y TEPIN FHG    ++ PIR+SYH   HYNS+V+P +
Sbjct: 237 HGNHIEMQAMAEMYNRPVEVYQYGTEPINTFHGIQQNEDEPIRVSYHRNIHYNSVVNPNK 296

Query: 90  MTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVM 149
            T+G GLG    +    ++  +K+AI+  ++  I+  +L + +  +D E T + IE  V 
Sbjct: 297 ATIGVGLGLPSFKPGFAEQSLMKSAIRTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 356

Query: 150 EVSRAEYLAGDNLKQ 164
             S  ++L  D  KQ
Sbjct: 357 RESYLQWLR-DQEKQ 370

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q7ZX21|OTU5A_XENLA OTU domain-containing protein 5-A OS=Xenopus laevis GN=otud5-a PE=2 SV=1

 Score =  115 bits (288), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 82/128 (64%), Gaps = 3/128 (2%)

Query: 30  YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
           +GN++E+QA+ EMYNRP+ +Y Y TEPIN FHG    ++ PIR+SYH   HYNS+V+P +
Sbjct: 232 HGNHIEMQAMAEMYNRPVEVYQYGTEPINTFHGIQKNEDEPIRVSYHRNIHYNSVVNPNK 291

Query: 90  MTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVM 149
            T+G GLG    +    ++  +K+AI+  ++  I+  +L + +  +D E T + IE    
Sbjct: 292 ATIGVGLGLPSFKPGYAEQSLMKSAIRTSEESWIEQQMLEDKKRATDWEATNEAIE---E 348

Query: 150 EVSRAEYL 157
           +V+R  YL
Sbjct: 349 QVARESYL 356

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1

 Score =  112 bits (279), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 55/140 (39%), Positives = 85/140 (60%), Gaps = 6/140 (4%)

Query: 30  YGNNVEIQALCEMYNRPIHIYSYTT-----EPINIFHGSYNTDNPPIRLSYHHGNHYNSL 84
           +GN++E+QA+ EMYNRP+ +Y Y+T     EPIN FHG +  ++ PIR+SYH   HYNS+
Sbjct: 279 HGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHRNIHYNSV 338

Query: 85  VDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEI 144
           V+P + T+G GLG    +    ++  +K AIK  ++  I+  +L + +  +D E T + I
Sbjct: 339 VNPNKATIGVGLGLPSFKPGFAEQSLMKNAIKTSEESWIEQQMLEDKKRATDWEATNEAI 398

Query: 145 ECMVMEVSRAEYLAGDNLKQ 164
           E  V   S  ++L  D  KQ
Sbjct: 399 EEQVARESYLQWLR-DQEKQ 417

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
255565701	534	expressed protein, putative [Ricinus com	0.798	0.282	0.933	6e-80
225464886	528	PREDICTED: uncharacterized protein LOC10	0.825	0.295	0.878	6e-76
296084879	502	unnamed protein product [Vitis vinifera]	0.825	0.310	0.878	8e-76
357453181	253	OTU domain-containing protein [Medicago	0.841	0.628	0.837	9e-76
356539236	520	PREDICTED: uncharacterized protein LOC10	0.798	0.290	0.887	2e-75
356542770	519	PREDICTED: uncharacterized protein LOC10	0.798	0.290	0.887	3e-75
147860016	244	hypothetical protein VITISV_021902 [Viti	0.841	0.651	0.833	3e-74
224104891	534	predicted protein [Populus trichocarpa]	0.798	0.282	0.854	2e-73
449443464	539	PREDICTED: uncharacterized protein LOC10	0.798	0.280	0.807	5e-69
195615944	536	cysteine-type peptidase [Zea mays] gi|21	0.846	0.298	0.760	6e-69

>gi|255565701|ref|XP_002523840.1| expressed protein, putative [Ricinus communis] gi|223536928|gb|EEF38566.1| expressed protein, putative [Ricinus communis]

 Score =  301 bits (772), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 141/151 (93%), Positives = 143/151 (94%)

Query: 28  QVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDP 87
           +VYGNNVEIQAL EMYNRPIHIYSYTTEPINIFHGSYNTD PPIRLSYHHGNHYNSLVDP
Sbjct: 307 KVYGNNVEIQALSEMYNRPIHIYSYTTEPINIFHGSYNTDTPPIRLSYHHGNHYNSLVDP 366

Query: 88  RRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECM 147
           RR+TVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIE M
Sbjct: 367 RRLTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIERM 426

Query: 148 VMEVSRAEYLAGDNLKQQLGHKESSTSGAEP 178
           VME SRAEYLA D  KQQL HKESSTSGAEP
Sbjct: 427 VMEASRAEYLANDKFKQQLCHKESSTSGAEP 457

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464886|ref|XP_002273209.1| PREDICTED: uncharacterized protein LOC100246727 [Vitis vinifera]

 Score =  288 bits (738), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 138/157 (87%), Positives = 144/157 (91%), Gaps = 1/157 (0%)

Query: 28  QVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDP 87
           +VYGNN EIQAL EMYNRPIHIYSY+TEPINIFHGSY+TD PPIRLSYHHGNHYNSLVDP
Sbjct: 299 KVYGNNAEIQALSEMYNRPIHIYSYSTEPINIFHGSYDTDTPPIRLSYHHGNHYNSLVDP 358

Query: 88  RRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECM 147
           RR+T+GAGLGFS LRG NVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIE M
Sbjct: 359 RRLTIGAGLGFSSLRGVNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIERM 418

Query: 148 VMEVSRAEYLAGDNLKQQLGHKE-SSTSGAEPSSSGA 183
           VME SRAEYLA D  K QLG +E SSTSGAEPSSSGA
Sbjct: 419 VMEASRAEYLADDKFKSQLGCRESSSTSGAEPSSSGA 455

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084879|emb|CBI28288.3| unnamed protein product [Vitis vinifera]

 Score =  288 bits (737), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 138/157 (87%), Positives = 144/157 (91%), Gaps = 1/157 (0%)

Query: 28  QVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDP 87
           +VYGNN EIQAL EMYNRPIHIYSY+TEPINIFHGSY+TD PPIRLSYHHGNHYNSLVDP
Sbjct: 273 KVYGNNAEIQALSEMYNRPIHIYSYSTEPINIFHGSYDTDTPPIRLSYHHGNHYNSLVDP 332

Query: 88  RRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECM 147
           RR+T+GAGLGFS LRG NVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIE M
Sbjct: 333 RRLTIGAGLGFSSLRGVNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIERM 392

Query: 148 VMEVSRAEYLAGDNLKQQLGHKE-SSTSGAEPSSSGA 183
           VME SRAEYLA D  K QLG +E SSTSGAEPSSSGA
Sbjct: 393 VMEASRAEYLADDKFKSQLGCRESSSTSGAEPSSSGA 429

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357453181|ref|XP_003596867.1| OTU domain-containing protein [Medicago truncatula] gi|355485915|gb|AES67118.1| OTU domain-containing protein [Medicago truncatula]

 Score =  288 bits (736), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 134/160 (83%), Positives = 146/160 (91%), Gaps = 1/160 (0%)

Query: 19  KRFVLTSWMQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHG 78
           +++V  SW QVYGNNVEIQA+CEMYNRPIHIYSY+TEPIN FHGSY+TD PP+RLS+HHG
Sbjct: 21  RKYVNPSW-QVYGNNVEIQAMCEMYNRPIHIYSYSTEPINTFHGSYDTDTPPVRLSFHHG 79

Query: 79  NHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLE 138
           NHYNSLVDPRR T+GAGLGFS LRGTNVDKDQVKAAIK+QQDQQIDNALLAEGRFYSDLE
Sbjct: 80  NHYNSLVDPRRPTIGAGLGFSSLRGTNVDKDQVKAAIKSQQDQQIDNALLAEGRFYSDLE 139

Query: 139 LTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESSTSGAEP 178
           LTEKEIE  VME SRAEYLAG   KQQLG++ESSTS AEP
Sbjct: 140 LTEKEIELAVMEASRAEYLAGGTFKQQLGNRESSTSTAEP 179

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539236|ref|XP_003538105.1| PREDICTED: uncharacterized protein LOC100780250 [Glycine max]

 Score =  286 bits (733), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 134/151 (88%), Positives = 143/151 (94%)

Query: 28  QVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDP 87
           +VYGNNVEIQA+CEMYNRPIHIYSYTTEPINIFHGSYNTD PPIRLSYHHGNHYNSLVDP
Sbjct: 295 KVYGNNVEIQAMCEMYNRPIHIYSYTTEPINIFHGSYNTDTPPIRLSYHHGNHYNSLVDP 354

Query: 88  RRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECM 147
           RR+T+GAGLGFS LRGTNVDKD+VKAAIKAQQDQQI+NALLAEGRFYSDLELTEKEIE M
Sbjct: 355 RRLTIGAGLGFSSLRGTNVDKDKVKAAIKAQQDQQINNALLAEGRFYSDLELTEKEIERM 414

Query: 148 VMEVSRAEYLAGDNLKQQLGHKESSTSGAEP 178
           V+EVSRAEYLA    KQQLG++ESSTS AEP
Sbjct: 415 VIEVSRAEYLADSAFKQQLGNRESSTSNAEP 445

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542770|ref|XP_003539838.1| PREDICTED: uncharacterized protein LOC100809162 [Glycine max]

 Score =  286 bits (732), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 134/151 (88%), Positives = 142/151 (94%)

Query: 28  QVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDP 87
           +VYGNNVEIQA+CEMYNRPIHIYSYTTEPINIFHGSYNTD PPIRLSYHHGNHYNSLVDP
Sbjct: 294 KVYGNNVEIQAMCEMYNRPIHIYSYTTEPINIFHGSYNTDMPPIRLSYHHGNHYNSLVDP 353

Query: 88  RRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECM 147
           RR+T+GAGLGFS LRGTNVDKDQVKAAIKAQQD+QI+NALLAEGRFYSDLELTEKEIE M
Sbjct: 354 RRLTIGAGLGFSSLRGTNVDKDQVKAAIKAQQDKQINNALLAEGRFYSDLELTEKEIERM 413

Query: 148 VMEVSRAEYLAGDNLKQQLGHKESSTSGAEP 178
           V+EVSRAEYLA    KQQLG +ESSTS AEP
Sbjct: 414 VIEVSRAEYLADSTFKQQLGDRESSTSNAEP 444

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860016|emb|CAN81048.1| hypothetical protein VITISV_021902 [Vitis vinifera]

 Score =  283 bits (723), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 140/168 (83%), Positives = 146/168 (86%), Gaps = 9/168 (5%)

Query: 25  SWMQ---VYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHY 81
           SW +   VYGNN EIQAL EMYNRPIHIYSY+TEPINIFHGSY+TD PPIRLSYHHGNHY
Sbjct: 4   SWNKNELVYGNNAEIQALSEMYNRPIHIYSYSTEPINIFHGSYDTDTPPIRLSYHHGNHY 63

Query: 82  NSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDN-----ALLAEGRFYSD 136
           NSLVDPRR+T+GAGLGFS LRG NVDKDQVKAAIKAQQDQQIDN     ALLAEGRFYSD
Sbjct: 64  NSLVDPRRLTIGAGLGFSSLRGVNVDKDQVKAAIKAQQDQQIDNASTYIALLAEGRFYSD 123

Query: 137 LELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKE-SSTSGAEPSSSGA 183
           LELTEKEIE MVME SRAEYLA D  K QLG +E SSTSGAEPSSSGA
Sbjct: 124 LELTEKEIERMVMEASRAEYLADDKFKSQLGCRESSSTSGAEPSSSGA 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104891|ref|XP_002313608.1| predicted protein [Populus trichocarpa] gi|222850016|gb|EEE87563.1| predicted protein [Populus trichocarpa]

 Score =  280 bits (717), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 129/151 (85%), Positives = 140/151 (92%)

Query: 28  QVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDP 87
           +VYGNNVEIQAL EMYNRPIHIYSY+TEPINIFHGSYNTD PPIRLSYHHGNHYNSLV+P
Sbjct: 306 KVYGNNVEIQALSEMYNRPIHIYSYSTEPINIFHGSYNTDTPPIRLSYHHGNHYNSLVNP 365

Query: 88  RRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECM 147
           RR T+GAGLGFSCL+G +VD+DQ+KAAIKAQQDQQI+NALLAEGRFYSDLELTEKEIE M
Sbjct: 366 RRSTIGAGLGFSCLQGASVDRDQIKAAIKAQQDQQINNALLAEGRFYSDLELTEKEIERM 425

Query: 148 VMEVSRAEYLAGDNLKQQLGHKESSTSGAEP 178
           VME SRAEYLA +  K QLG KESST+GAEP
Sbjct: 426 VMEASRAEYLADNKFKPQLGRKESSTAGAEP 456

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443464|ref|XP_004139497.1| PREDICTED: uncharacterized protein LOC101208627 [Cucumis sativus]

 Score =  265 bits (678), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 122/151 (80%), Positives = 138/151 (91%)

Query: 28  QVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDP 87
           +VYGNN EIQALCEMYNRPIHI+SY TEPINIFHG+Y TD PPIRLSYHHGNHYNSLVDP
Sbjct: 314 KVYGNNAEIQALCEMYNRPIHIFSYGTEPINIFHGNYATDLPPIRLSYHHGNHYNSLVDP 373

Query: 88  RRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECM 147
           RR+ +GAGLGFS LRG NVDKD+VKAA+KAQQDQQ+DNALLA+GR++SDLE+TEKEIE M
Sbjct: 374 RRLAIGAGLGFSSLRGANVDKDKVKAALKAQQDQQLDNALLAQGRYFSDLEVTEKEIEQM 433

Query: 148 VMEVSRAEYLAGDNLKQQLGHKESSTSGAEP 178
           VME SRAEYLA  +LKQQL  +++STSGAEP
Sbjct: 434 VMEASRAEYLAKYSLKQQLDRRDNSTSGAEP 464

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195615944|gb|ACG29802.1| cysteine-type peptidase [Zea mays] gi|219885693|gb|ACL53221.1| unknown [Zea mays] gi|223948957|gb|ACN28562.1| unknown [Zea mays] gi|414587321|tpg|DAA37892.1| TPA: cysteine-type peptidase isoform 1 [Zea mays] gi|414587322|tpg|DAA37893.1| TPA: cysteine-type peptidase isoform 2 [Zea mays]

 Score =  265 bits (677), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 127/167 (76%), Positives = 141/167 (84%), Gaps = 7/167 (4%)

Query: 16  FVVKRFVL----TSWMQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPI 71
           F+ + F L        +VYGNNVEIQA  EMYNRPIHIYSY+TEPINIF GSYNTD PPI
Sbjct: 287 FITESFTLYCKRKRRDKVYGNNVEIQAFAEMYNRPIHIYSYSTEPINIFQGSYNTDTPPI 346

Query: 72  RLSYHHGNHYNSLVDPRRMTVGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEG 131
           RLSYHHGNHYNS+VDPRR T+GAGLGFS  RGTNVD+DQVKAAIKAQQDQQIDNAL+AEG
Sbjct: 347 RLSYHHGNHYNSVVDPRRQTIGAGLGFSSFRGTNVDRDQVKAAIKAQQDQQIDNALMAEG 406

Query: 132 RFYSDLELTEKEIECMVMEVSRAEYLAGDNLKQQLGHKESSTSGAEP 178
           RFYSDLELTE+EIE MVME SR+EYLA +   ++L  +ESSTSGAEP
Sbjct: 407 RFYSDLELTEREIERMVMEASRSEYLAKE---KKLNIRESSTSGAEP 450

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
TAIR|locus:2039642	506	OTLD1 "otubain-like deubiquiti	0.746	0.278	0.690	1.1e-46
DICTYBASE|DDB_G0285907	537	DDB_G0285907 "OTU domain conta	0.677	0.238	0.441	1.2e-22
UNIPROTKB|I3L773	566	OTUD5 "Uncharacterized protein	0.708	0.236	0.370	7.6e-21
MGI|MGI:1859615	566	Otud5 "OTU domain containing 5	0.708	0.236	0.370	7.6e-21
RGD|1563027	566	Otud5 "OTU domain containing 5	0.708	0.236	0.370	7.6e-21
UNIPROTKB|E1BFW9	567	OTUD5 "Uncharacterized protein	0.708	0.236	0.370	7.7e-21
UNIPROTKB|Q640H3	518	otud5-b "OTU domain-containing	0.708	0.258	0.370	7.7e-21
UNIPROTKB|Q7ZX21	513	otud5-a "OTU domain-containing	0.708	0.261	0.370	1.6e-20
UNIPROTKB|Q6GL44	518	otud5 "OTU domain-containing p	0.708	0.258	0.370	2.1e-20
ZFIN|ZDB-GENE-030616-61	560	otud5a "OTU domain containing	0.708	0.239	0.362	1.5e-19

TAIR|locus:2039642 OTLD1 "otubain-like deubiquitinase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 98/142 (69%), Positives = 107/142 (75%)

Query:    28 QVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDP 87
             +VYGNNVEIQAL EMYNRPIHIYSY+TEPINIF G+Y+TD PPIRLSYHHGNHYNSLVDP
Sbjct:   280 KVYGNNVEIQALAEMYNRPIHIYSYSTEPINIFQGNYSTDTPPIRLSYHHGNHYNSLVDP 339

Query:    88 RRMTVGAGLGFSCLRGTNXXXXXXXXXXXXXXXXXXXNALLAEGRFYSDLELTEKEIECM 147
              R+TVGAGLGFS L G +                   NALLAEGRFYSDLELTEKEIE  
Sbjct:   340 HRLTVGAGLGFSSLSGRHVDKEQVKAAIKAQQEHQIDNALLAEGRFYSDLELTEKEIERS 399

Query:   148 VMEVSRAEYLAGDNLKQQLGHK 169
             VME SRAEYL  +  K ++G K
Sbjct:   400 VMEASRAEYLM-EWSKPRIGPK 420

GO:0005634 "nucleus" evidence=ISM

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0003682 "chromatin binding" evidence=IDA

GO:0016578 "histone deubiquitination" evidence=IDA

GO:0031491 "nucleosome binding" evidence=IDA

GO:0042393 "histone binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

DICTYBASE|DDB_G0285907 DDB_G0285907 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 269 (99.8 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 57/129 (44%), Positives = 73/129 (56%)

Query:    28 QVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDP 87
             +V+GNN E+QA+ E++NRPI +YS T +PINIFHGSY   N PIRLSY HGNHY+S+ D 
Sbjct:   285 KVFGNNTEMQAMAELFNRPIEVYSKTIDPINIFHGSYK-GNYPIRLSYLHGNHYDSIYDL 343

Query:    88 RRMTVGAGLGFSCLRGTNXXXXXXXXXXXXXXXXXXXNALLAEGRFYSDLELTEKEIECM 147
                +VG GLGF+                           +  E    +D + TE EIE  
Sbjct:   344 NNPSVGVGLGFADFHPGAADKSQMETAIKTSEFDLIDQQIYDESLLETDWKETELEIEEA 403

Query:   148 VMEVSRAEY 156
             V+  SRAEY
Sbjct:   404 VLAASRAEY 412

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|I3L773 OTUD5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 253 (94.1 bits), Expect = 7.6e-21, P = 7.6e-21
 Identities = 50/135 (37%), Positives = 74/135 (54%)

Query:    30 YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
             +GN++E+QA+ EMYNRP+ +Y Y+TEPIN FHG +  ++ PIR+SYH   HYNS+V+P +
Sbjct:   278 HGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNK 337

Query:    90 MTVGAGLGFSCLRGTNXXXXXXXXXXXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVM 149
              T+G GLG    +                        +L + +  +D E T + IE  V 
Sbjct:   338 ATIGVGLGLPSFKPGFAEQSLMKNAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 397

Query:   150 EVSRAEYLAGDNLKQ 164
               S  ++L  D  KQ
Sbjct:   398 RESYLQWLR-DQEKQ 411

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0070536 "protein K63-linked deubiquitination" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

MGI|MGI:1859615 Otud5 "OTU domain containing 5" [Mus musculus (taxid:10090)]

 Score = 253 (94.1 bits), Expect = 7.6e-21, P = 7.6e-21
 Identities = 50/135 (37%), Positives = 74/135 (54%)

Query:    30 YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
             +GN++E+QA+ EMYNRP+ +Y Y+TEPIN FHG +  ++ PIR+SYH   HYNS+V+P +
Sbjct:   279 HGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNK 338

Query:    90 MTVGAGLGFSCLRGTNXXXXXXXXXXXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVM 149
              T+G GLG    +                        +L + +  +D E T + IE  V 
Sbjct:   339 ATIGVGLGLPSFKPGFAEQSLMKNAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 398

Query:   150 EVSRAEYLAGDNLKQ 164
               S  ++L  D  KQ
Sbjct:   399 RESYLQWLR-DQEKQ 412

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=ISO

GO:0070536 "protein K63-linked deubiquitination" evidence=ISO

GO:0071108 "protein K48-linked deubiquitination" evidence=ISO

RGD|1563027 Otud5 "OTU domain containing 5" [Rattus norvegicus (taxid:10116)]

 Score = 253 (94.1 bits), Expect = 7.6e-21, P = 7.6e-21
 Identities = 50/135 (37%), Positives = 74/135 (54%)

Query:    30 YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
             +GN++E+QA+ EMYNRP+ +Y Y+TEPIN FHG +  ++ PIR+SYH   HYNS+V+P +
Sbjct:   279 HGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNK 338

Query:    90 MTVGAGLGFSCLRGTNXXXXXXXXXXXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVM 149
              T+G GLG    +                        +L + +  +D E T + IE  V 
Sbjct:   339 ATIGVGLGLPSFKPGFAEQSLMKNAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 398

Query:   150 EVSRAEYLAGDNLKQ 164
               S  ++L  D  KQ
Sbjct:   399 RESYLQWLR-DQEKQ 412

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA;ISO;ISS

GO:0006508 "proteolysis" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA;ISO;ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=IEA;ISO;ISS

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA;ISO;ISS

UNIPROTKB|E1BFW9 OTUD5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 253 (94.1 bits), Expect = 7.7e-21, P = 7.7e-21
 Identities = 50/135 (37%), Positives = 74/135 (54%)

Query:    30 YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
             +GN++E+QA+ EMYNRP+ +Y Y+TEPIN FHG +  ++ PIR+SYH   HYNS+V+P +
Sbjct:   279 HGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNK 338

Query:    90 MTVGAGLGFSCLRGTNXXXXXXXXXXXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVM 149
              T+G GLG    +                        +L + +  +D E T + IE  V 
Sbjct:   339 ATIGVGLGLPSFKPGFAEQSLMKNAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 398

Query:   150 EVSRAEYLAGDNLKQ 164
               S  ++L  D  KQ
Sbjct:   399 RESYLQWLR-DQEKQ 412

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0070536 "protein K63-linked deubiquitination" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

UNIPROTKB|Q640H3 otud5-b "OTU domain-containing protein 5-B" [Xenopus laevis (taxid:8355)]

 Score = 252 (93.8 bits), Expect = 7.7e-21, P = 7.7e-21
 Identities = 50/135 (37%), Positives = 73/135 (54%)

Query:    30 YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
             +GN++E+QA+ EMYNRP+ +Y Y TEPIN FHG    ++ PIR+SYH   HYNS+V+P +
Sbjct:   237 HGNHIEMQAMAEMYNRPVEVYQYGTEPINTFHGIQQNEDEPIRVSYHRNIHYNSVVNPNK 296

Query:    90 MTVGAGLGFSCLRGTNXXXXXXXXXXXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVM 149
              T+G GLG    +  +                     +L + +  +D E T + IE  V 
Sbjct:   297 ATIGVGLGLPSFKPGHAEQSLMKSAIRTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 356

Query:   150 EVSRAEYLAGDNLKQ 164
               S  ++L  D  KQ
Sbjct:   357 RESYLQWLR-DQEKQ 370

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0032496 "response to lipopolysaccharide" evidence=ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=ISS

GO:0071108 "protein K48-linked deubiquitination" evidence=ISS

UNIPROTKB|Q7ZX21 otud5-a "OTU domain-containing protein 5-A" [Xenopus laevis (taxid:8355)]

 Score = 249 (92.7 bits), Expect = 1.6e-20, P = 1.6e-20
 Identities = 50/135 (37%), Positives = 72/135 (53%)

Query:    30 YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
             +GN++E+QA+ EMYNRP+ +Y Y TEPIN FHG    ++ PIR+SYH   HYNS+V+P +
Sbjct:   232 HGNHIEMQAMAEMYNRPVEVYQYGTEPINTFHGIQKNEDEPIRVSYHRNIHYNSVVNPNK 291

Query:    90 MTVGAGLGFSCLRGTNXXXXXXXXXXXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVM 149
              T+G GLG    +                        +L + +  +D E T + IE  V 
Sbjct:   292 ATIGVGLGLPSFKPGYAEQSLMKSAIRTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 351

Query:   150 EVSRAEYLAGDNLKQ 164
               S  ++L  D  KQ
Sbjct:   352 RESYLQWLR-DQEKQ 365

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0032496 "response to lipopolysaccharide" evidence=ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=ISS

GO:0071108 "protein K48-linked deubiquitination" evidence=ISS

UNIPROTKB|Q6GL44 otud5 "OTU domain-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 248 (92.4 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 50/135 (37%), Positives = 72/135 (53%)

Query:    30 YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
             +GN++E+QA+ EMYNRP+ +Y Y TEPIN FHG    ++ PIR+SYH   HYNS+V+P +
Sbjct:   237 HGNHIEMQAMAEMYNRPVEVYQYGTEPINTFHGIQQNEDEPIRVSYHRNIHYNSVVNPNK 296

Query:    90 MTVGAGLGFSCLRGTNXXXXXXXXXXXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVM 149
              T+G GLG    +                        +L + +  +D E T + IE  V 
Sbjct:   297 ATIGVGLGLPSFKPGFAEQSLMKSAIRTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 356

Query:   150 EVSRAEYLAGDNLKQ 164
               S  ++L  D  KQ
Sbjct:   357 RESYLQWLR-DQEKQ 370

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0032496 "response to lipopolysaccharide" evidence=ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=ISS

GO:0071108 "protein K48-linked deubiquitination" evidence=ISS

ZFIN|ZDB-GENE-030616-61 otud5a "OTU domain containing 5a" [Danio rerio (taxid:7955)]

 Score = 241 (89.9 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 49/135 (36%), Positives = 72/135 (53%)

Query:    30 YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
             +GN++E+QA+ EMYNRP+ +Y   TEPIN FHG +  ++ PIR+SYH   HYNS+V+P +
Sbjct:   277 HGNHIEMQAMAEMYNRPVEVYQSGTEPINTFHGIHQNNDEPIRVSYHRNIHYNSVVNPNK 336

Query:    90 MTVGAGLGFSCLRGTNXXXXXXXXXXXXXXXXXXXNALLAEGRFYSDLELTEKEIECMVM 149
              T+G GLG    +                        +L + +  +D E T + IE  V 
Sbjct:   337 ATIGVGLGLPAFKPGFADQSLMKNAIKTSEESWIEQQMLEDKKRATDWEATNEAIEEQVA 396

Query:   150 EVSRAEYLAGDNLKQ 164
               S  ++L  D  KQ
Sbjct:   397 RESYLQWLR-DQEKQ 410

GO:0005575 "cellular_component" evidence=ND

GO:0032496 "response to lipopolysaccharide" evidence=ISS

GO:0070536 "protein K63-linked deubiquitination" evidence=ISS

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS

GO:0071108 "protein K48-linked deubiquitination" evidence=ISS

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037311001 SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (502 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	189
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	6e-09

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 51.4 bits (123), Expect = 6e-09
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 9/62 (14%)

Query: 29  VYGNNVEIQALCEMYNRPIHIYSYTTEPINIF-----HGSYNTDNPPIRLSYHH----GN 79
            +G N+EI AL  +   PI +Y      I ++             P IRLSY      GN
Sbjct: 62  AWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPLNKKPVIRLSYLGLEYTGN 121

Query: 80  HY 81
           HY
Sbjct: 122 HY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.77
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.52
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.16
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.18
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	97.81
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	97.6
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	97.38
KOG3991	256	consensus Uncharacterized conserved protein [Funct	93.7

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=2.6e-19  Score=158.53  Aligned_cols=83  Identities=24%  Similarity=0.456  Sum_probs=68.2

Q ss_pred             eeeccccCCCCcc-cHHHHHhhcCCC-CCCCHHHHHHHHHhhCCCEEEEecCCCceEEecCCCCCCCCcEEEEEcC----
Q 029712            4 FSFSVCNCDSHSF-VVKRFVLTSWMQ-VYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHH----   77 (189)
Q Consensus         4 ~~~~~~n~Df~~~-~fdeYc~~i~d~-~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if~e~~~~~~~~I~LsYh~----   77 (189)
                      |.+..++-|-.++ -|++||+.|+++ +|||+|||+|||++|.+||+||+.++++. +++++|.+ .+||+|+||+    
T Consensus       210 f~~~eet~d~~~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~p~~-~~geey~k-d~pL~lvY~rH~y~  287 (302)
T KOG2606|consen  210 FLLDEETGDSLGPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADGPIL-EYGEEYGK-DKPLILVYHRHAYG  287 (302)
T ss_pred             HhcCccccccCCHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCCCce-eechhhCC-CCCeeeehHHhHHH
Confidence            4444555544443 399999988875 99999999999999999999999998655 66688876 6899999999    


Q ss_pred             -CCCCccccCCC
Q 029712           78 -GNHYNSLVDPR   88 (189)
Q Consensus        78 -G~HYNSV~~p~   88 (189)
                       |+||||+.+++
T Consensus       288 LGeHYNS~~~~~  299 (302)
T KOG2606|consen  288 LGEHYNSVTPLK  299 (302)
T ss_pred             HHhhhccccccc
Confidence             99999998654

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=4.9e-15  Score=130.04  Aligned_cols=103  Identities=23%  Similarity=0.403  Sum_probs=83.2

Q ss_pred             HHHHHhhcCC-CCCCCHHHHHHHHHhhCCCEEEEecCCCceEEecCCCCCCCCcEEEEEcCCCCCccccCCCCCCcccCC
Q 029712           18 VKRFVLTSWM-QVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMTVGAGL   96 (189)
Q Consensus        18 fdeYc~~i~d-~~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if~e~~~~~~~~I~LsYh~G~HYNSV~~p~~~~ig~gl   96 (189)
                      =.+||.||+. ..|||.|||.+||..|++.|+|++.++-+|+.|+++ ......+.|.|. |+|||++.           
T Consensus       165 n~eYc~WI~k~dsWGGaIElsILS~~ygveI~vvDiqt~rid~fged-~~~~~rv~llyd-GIHYD~l~-----------  231 (307)
T KOG3288|consen  165 NKEYCAWILKMDSWGGAIELSILSDYYGVEICVVDIQTVRIDRFGED-KNFDNRVLLLYD-GIHYDPLA-----------  231 (307)
T ss_pred             cHHHHHHHccccccCceEEeeeehhhhceeEEEEecceeeehhcCCC-CCCCceEEEEec-ccccChhh-----------
Confidence            3789999987 599999999999999999999999999999999654 335667888886 99999986           


Q ss_pred             CCCCCCCCchhHHHHHHHHHHhhHHHHHHH-----HHhccccccchH
Q 029712           97 GFSCLRGTNVDKDQVKAAIKAQQDQQIDNA-----LLAEGRFYSDLE  138 (189)
Q Consensus        97 g~~~~~p~~~dk~~~~~a~~~se~~~ie~a-----~l~dk~~~tD~e  138 (189)
                       +.-+.|.++|..    .|..+++.++.+|     .++.+++|||+-
T Consensus       232 -m~~~~~~~~~~t----ifp~~dd~v~~~alqLa~~~k~~r~ytdt~  273 (307)
T KOG3288|consen  232 -MNEFKPTDVDNT----IFPVSDDTVLTQALQLASELKRTRYYTDTA  273 (307)
T ss_pred             -hccCCccCCccc----ccccccchHHHHHHHHHHHHHhcceecccc
Confidence             122456777766    6777777666665     578899999964

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.16  E-value=2.4e-11  Score=91.65  Aligned_cols=59  Identities=41%  Similarity=0.668  Sum_probs=46.0

Q ss_pred             hhcCCCCCCCHHHHHHHHHhhCCCEEEEecCCCceEEe---cC--CCCCCCCcEEEEEcC-----CCCC
Q 029712           23 LTSWMQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIF---HG--SYNTDNPPIRLSYHH-----GNHY   81 (189)
Q Consensus        23 ~~i~d~~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if---~e--~~~~~~~~I~LsYh~-----G~HY   81 (189)
                      +|.++++|||++||+|||++|+|+|.||+........+   .+  ......++|+|+|+.     |+||
T Consensus        53 ~~~~~~~Wg~~~el~a~a~~~~~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   53 KMSKPGTWGGEIELQALANVLNRPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             HHTSTTSHEEHHHHHHHHHHHTSEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred             hhccccccCcHHHHHHHHHHhCCeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence            35677899999999999999999999998865442222   11  123467899999999     9998

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=1.5e-06  Score=77.79  Aligned_cols=64  Identities=20%  Similarity=0.156  Sum_probs=50.0

Q ss_pred             HHHHHhhcCC-CCCCCHHHHHHHHHhhCCCEEEEecCCCceEEecCCCCCCCCcEEEEEcC-----CCCCcccc
Q 029712           18 VKRFVLTSWM-QVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHH-----GNHYNSLV   85 (189)
Q Consensus        18 fdeYc~~i~d-~~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if~e~~~~~~~~I~LsYh~-----G~HYNSV~   85 (189)
                      |++||+.++. ..||+.+|+|+||..+++|+.++...++.+ .++.-.  .+....+.|+.     | |||+..
T Consensus       236 ~dt~~ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~~~i-k~n~c~--~~~~~e~~~~~Ha~a~G-H~n~~~  305 (306)
T COG5539         236 WDTYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTASPSI-KCNICG--TGFVGEKDYYAHALATG-HYNFGE  305 (306)
T ss_pred             HHHHHhhhcccccccchHHHHHHHHHhcCceEEeecCCceE-Eeeccc--cccchhhHHHHHHHhhc-CccccC
Confidence            8999997776 599999999999999999999999877655 333221  23456677766     7 999975

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=1.8e-05  Score=72.96  Aligned_cols=76  Identities=17%  Similarity=0.189  Sum_probs=55.7

Q ss_pred             CCCccc---HHHHHh-hcCCCCCCCHHHHHHHH---HhhCCCEEEEecCCCceEEecCCCCCCCCcEEEEEcCCCCCccc
Q 029712           12 DSHSFV---VKRFVL-TSWMQVYGNNVEIQALC---EMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSL   84 (189)
Q Consensus        12 Df~~~~---fdeYc~-~i~d~~WGG~IELqALS---e~y~~~I~Vy~~~~~~i~if~e~~~~~~~~I~LsYh~G~HYNSV   84 (189)
                      +|.+|+   |-.|.+ |.+++.||+|+|+||+|   +....|+.+.+.......-..+...+....+++.|+.-.|||.+
T Consensus       262 ~~~~~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~n~~~~~h~~~~  341 (371)
T KOG2605|consen  262 FYEDYVTEDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIEESVKMEKYNFWVEVHYNTA  341 (371)
T ss_pred             ccccccccchhhcccccccCCCCcchHHHhhhhhhhhhccccceeecccccceeccCcccccchhhhhhcccchhhhhhc
Confidence            355555   788998 56689999999999999   67788888888876543333233333445577778888999999


Q ss_pred             cCC
Q 029712           85 VDP   87 (189)
Q Consensus        85 ~~p   87 (189)
                      +..
T Consensus       342 ~~~  344 (371)
T KOG2605|consen  342 RHS  344 (371)
T ss_pred             ccc
Confidence            855

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.60  E-value=0.00015  Score=61.89  Aligned_cols=69  Identities=26%  Similarity=0.398  Sum_probs=46.0

Q ss_pred             ccHHHHHh-hcCC-CCCCCHHHHHHHHHhhCCCEEEEecCCC----ceE--EecCCCCCCCCcEEEEEcCCCCCcccc
Q 029712           16 FVVKRFVL-TSWM-QVYGNNVEIQALCEMYNRPIHIYSYTTE----PIN--IFHGSYNTDNPPIRLSYHHGNHYNSLV   85 (189)
Q Consensus        16 ~~fdeYc~-~i~d-~~WGG~IELqALSe~y~~~I~Vy~~~~~----~i~--if~e~~~~~~~~I~LsYh~G~HYNSV~   85 (189)
                      ..+++||+ .+.. +.=.+||.|.|||++++++|.|+-.+..    .++  .+.+......+.|+|.|--| |||-++
T Consensus       167 ~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~~~~~~~~~~i~LLyrpg-HYdIly  243 (244)
T PF10275_consen  167 LTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFPPDNESQEPQITLLYRPG-HYDILY  243 (244)
T ss_dssp             S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES-SSTTSS-SEEEEEETB-EEEEEE
T ss_pred             CCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCCCccCCCCCEEEEEEcCC-cccccc
Confidence            45889998 5666 5888999999999999999999988743    122  23222234678999999855 999775

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=2.1e-05  Score=70.56  Aligned_cols=66  Identities=14%  Similarity=0.215  Sum_probs=54.1

Q ss_pred             cHHHHHhhcCC-CCCC-CHHHHHHHHHhhCCCEEEEecCCCceEEecCCCCCCCCcEEEEEcCCCCCcccc
Q 029712           17 VVKRFVLTSWM-QVYG-NNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLV   85 (189)
Q Consensus        17 ~fdeYc~~i~d-~~WG-G~IELqALSe~y~~~I~Vy~~~~~~i~if~e~~~~~~~~I~LsYh~G~HYNSV~   85 (189)
                      .--.||.|+.. ..|| |++|+-+||..+++.|+|..+....+..+++.  +....+++.|. |+|||...
T Consensus       163 ~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~--~~~q~~~i~f~-g~hfD~~t  230 (306)
T COG5539         163 DVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSH--PYVQRISILFT-GIHFDEET  230 (306)
T ss_pred             chHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCC--hhhhhhhhhhc-ccccchhh
Confidence            45779999887 5999 99999999999999999999987666666432  23456888886 99999986

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.70  E-value=0.14  Score=45.34  Aligned_cols=68  Identities=22%  Similarity=0.289  Sum_probs=49.7

Q ss_pred             cHHHHHh-hcCCC-CCCCHHHHHHHHHhhCCCEEEEecCCCceEEe-cCCCC-CCCCcEEEEEcCCCCCcccc
Q 029712           17 VVKRFVL-TSWMQ-VYGNNVEIQALCEMYNRPIHIYSYTTEPINIF-HGSYN-TDNPPIRLSYHHGNHYNSLV   85 (189)
Q Consensus        17 ~fdeYc~-~i~d~-~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if-~e~~~-~~~~~I~LsYh~G~HYNSV~   85 (189)
                      .++.||. .+..- .=-|||+|-|||+++++.|.|--++...-... +-.+. ...|.|.|.|- -.|||-++
T Consensus       183 tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fpe~s~P~I~LLYr-pGHYdilY  254 (256)
T KOG3991|consen  183 TVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFPEASAPEIYLLYR-PGHYDILY  254 (256)
T ss_pred             cHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCccccCceEEEEec-CCcccccc
Confidence            3789999 46653 66899999999999999999987754322122 11221 25678999986 78999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	189
3tmp_A	184	The Catalytic Domain Of Human Deubiquitinase Duba I		1e-18
3tmo_A	184	The Catalytic Domain Of Human Deubiquitinase Duba L		4e-17
3pfy_A	185	The Catalytic Domain Of Human Otud5 Length = 185		2e-15

>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In Complex With Ubiquitin Aldehyde Length = 184

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 54/73 (73%), Gaps = 5/73 (6%)
Query: 30  YGNNVEIQALCEMYNRPIHIYSYTT-----EPINIFHGSYNTDNPPIRLSYHHGNHYNSL 84
           +GN++E+QA+ EMYNRP+ +Y Y+T     EPIN FHG +  ++ PIR+SYH   HYNS+
Sbjct: 112 HGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHRNIHYNSV 171
Query: 85  VDPRRMTVGAGLG 97
           V+P + T+G GLG
Sbjct: 172 VNPNKATIGVGLG 184

>pdb|3TMO|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba Length = 184

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 51/73 (69%), Gaps = 5/73 (6%)
Query: 30  YGNNVEIQALCEMYNRPIHIYSYTT-----EPINIFHGSYNTDNPPIRLSYHHGNHYNSL 84
           +GN++E QA  E YNRP+ +Y Y+T     EPIN FHG +  ++ PIR+SYH   HYNS+
Sbjct: 112 HGNHIEXQAXAEXYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHRNIHYNSV 171
Query: 85  VDPRRMTVGAGLG 97
           V+P + T+G GLG
Sbjct: 172 VNPNKATIGVGLG 184

>pdb|3PFY|A Chain A, The Catalytic Domain Of Human Otud5 Length = 185

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 30  YGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRR 89
           +GN++E QA  E YNRP+ +Y Y+TEPIN FHG +  ++ PIR+SYH   HYNS+V+P +
Sbjct: 125 HGNHIEXQAXAEXYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPNK 184
Query: 90  M 90
Sbjct: 185 A 185
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	189
3pfy_A	185	OTU domain-containing protein 5; structural genomi	2e-20
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	2e-14
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	7e-14
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	3e-10
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	7e-05
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	2e-04
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	2e-04

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 83.3 bits (205), Expect = 2e-20
 Identities = 33/63 (52%), Positives = 48/63 (76%)

Query: 27  MQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVD 86
              +GN++E+QA+ EMYNRP+ +Y Y+TEPIN FHG +  ++ PIR+SYH   HYNS+V+
Sbjct: 122 NNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVN 181

Query: 87  PRR 89
           P +
Sbjct: 182 PNK 184

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 67.4 bits (164), Expect = 2e-14
 Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 25  SWMQ---VYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNP--PIRLSYHHGN 79
             M     +G+ +E   L +     I I++            +   +    + L +    
Sbjct: 93  KRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQT 152

Query: 80  HYNSL 84
           H+++L
Sbjct: 153 HFDAL 157

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 66.3 bits (161), Expect = 7e-14
 Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 6/126 (4%)

Query: 25  SWMQ---VYGNNVEIQALCEMYNRPIHIYSYTTEP--INIFHGSYNTDNPPIRLSYHHGN 79
             M     +G+ +E   L +     I I++                     + L +    
Sbjct: 93  KRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQT 152

Query: 80  HYNSLVDPRRMTVGAGLGFSCL-RGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLE 138
           H+++L    +         S + R   VD+    ++ + Q  + +  AL +         
Sbjct: 153 HFDALRILPQFETDTREALSLMDRVIAVDQLTSSSSDELQDYEDLALALTSAEESNRRSS 212

Query: 139 LTEKEI 144
           L E  +
Sbjct: 213 LDEVTL 218

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 56.1 bits (135), Expect = 3e-10
 Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 25  SWMQ---VYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHY 81
            W+     +G  +EI  + +     I++       I  F+   +  +  I + + +G HY
Sbjct: 78  QWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKFNE--DKFDNYILILF-NGIHY 134

Query: 82  NSLVDPRRMTV 92
           +SL      TV
Sbjct: 135 DSLTMNEFKTV 145

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11 Length = 234

 Score = 41.1 bits (96), Expect = 7e-05
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 27  MQVYGNNVEIQALCEMYNRPIHI-YSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSL 84
           M    ++++I AL +  +  + + Y    +     H       P + L Y    HYN L
Sbjct: 171 MATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTS-HYNIL 228

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A Length = 284

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 7/64 (10%)

Query: 27  MQVYGNNVEIQALCEMYNRPIHIY------SYTTEPINIFHGSYNTDNPPIRLSYHHGNH 80
           M    +++ I +L +     + I       +                 P I L Y  G H
Sbjct: 209 MWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPSDDQQIAPEITLLYRPG-H 267

Query: 81  YNSL 84
           Y+ +
Sbjct: 268 YDVI 271

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 27  MQVYGNNVEIQALCEMYNRPIHIYSYTTEPIN--IFHGSYNTDNPPIRLSYHHGNHYNSL 84
           M    +++ I AL +  +  I +             H       P + L Y  G HY+ L
Sbjct: 174 MCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEGSEPKVYLLYRPG-HYDIL 232

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	189
3pfy_A	185	OTU domain-containing protein 5; structural genomi	99.86
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.86
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.82
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.72
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.44
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.39
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.15
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	98.86
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	88.24
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	82.06

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=99.86  E-value=9.8e-23  Score=168.63  Aligned_cols=78  Identities=44%  Similarity=0.865  Sum_probs=54.9

Q ss_pred             CCccc---HHHHHhhcC-CCCCCCHHHHHHHHHhhCCCEEEEecCCCceEEecCCCCCCCCcEEEEEcCCCCCccccCCC
Q 029712           13 SHSFV---VKRFVLTSW-MQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPR   88 (189)
Q Consensus        13 f~~~~---fdeYc~~i~-d~~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if~e~~~~~~~~I~LsYh~G~HYNSV~~p~   88 (189)
                      |.+|+   |++||++++ +++|||++||+|||++|++||+||+.+++|++++.+......++|+|+||+++|||||++|.
T Consensus       104 f~~Fv~~~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p~  183 (185)
T 3pfy_A          104 FSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPN  183 (185)
T ss_dssp             HTTCC-----------------CCHHHHHHHHHHHTSCEEEESSCSSCSEEECTTSCCTTSCEEEEEETTTEEEEEECC-
T ss_pred             HHHHHhccHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCCeEEecCccCCCCCEEEEEECCCCCcccccCCC
Confidence            55554   899999655 57999999999999999999999999988998886544456789999999999999999998


Q ss_pred             CC
Q 029712           89 RM   90 (189)
Q Consensus        89 ~~   90 (189)
                      ++
T Consensus       184 ~~  185 (185)
T 3pfy_A          184 KA  185 (185)
T ss_dssp             --
T ss_pred             CC
Confidence            64

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.86  E-value=1.6e-22  Score=169.62  Aligned_cols=67  Identities=21%  Similarity=0.299  Sum_probs=59.3

Q ss_pred             cHHHHHhhcC-CCCCCCHHHHHHHHHhhCCCEEEEecCCCceEEecCCCCCCCCcEEEEEcCCCCCccccC
Q 029712           17 VVKRFVLTSW-MQVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYNTDNPPIRLSYHHGNHYNSLVD   86 (189)
Q Consensus        17 ~fdeYc~~i~-d~~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if~e~~~~~~~~I~LsYh~G~HYNSV~~   86 (189)
                      .|++||++++ +++|||||||+|||++|++||+||+..+.++.+|+++.  ..++|+|+|| |+|||||+.
T Consensus        72 ~~e~Y~~~m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~~~~~~~~~~--~~~~I~L~Y~-g~HYdsl~~  139 (212)
T 3by4_A           72 PNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKFNEDK--FDNYILILFN-GIHYDSLTM  139 (212)
T ss_dssp             CHHHHHHHTTSTTSCCCHHHHHHHHHHHTCEEEEEETTTTEEEEESTTT--CSEEEEEEEC-SSCEEEEEE
T ss_pred             CHHHHHHHhcCCCEEccHHHHHHHHHHHCCCEEEEECCCCCeEEeCCCC--CCCeEEEEEc-CCcceEEec
Confidence            3899999665 57999999999999999999999999877788887664  5779999999 999999985

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.82  E-value=9.6e-21  Score=160.42  Aligned_cols=110  Identities=11%  Similarity=0.083  Sum_probs=71.6

Q ss_pred             cHHHHHhh-cCCCCCCCHHHHHHHHHhhCCCEEEEecCCC----ceEEecCCCCCCCCcEEEEEcCCCCCccccCCCCCC
Q 029712           17 VVKRFVLT-SWMQVYGNNVEIQALCEMYNRPIHIYSYTTE----PINIFHGSYNTDNPPIRLSYHHGNHYNSLVDPRRMT   91 (189)
Q Consensus        17 ~fdeYc~~-i~d~~WGG~IELqALSe~y~~~I~Vy~~~~~----~i~if~e~~~~~~~~I~LsYh~G~HYNSV~~p~~~~   91 (189)
                      .|++||++ .++++|||++||+|||++|+++|+||+.+.+    .+..|+++.  ..++|+|+|++|+|||||+...+.+
T Consensus        87 ~feeY~~~m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~--~~~~I~L~Y~g~~HYdSL~~~~d~~  164 (219)
T 3phu_A           87 SLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGD--VFTAVNLLHSGQTHFDALRILPQFE  164 (219)
T ss_dssp             CHHHHHHHHHSTTCCCCHHHHHHHHHHTTCCEEEEEESSSSBEEEEEEESSCC--TTTSEEEEEETTTEEEEEEECTTTC
T ss_pred             CHHHHHHHhcCCCccCCHHHHHHHHHHhCCCEEEEEecCCCCceeEEEecCCC--CCCeEEEEECCCcCchhheECCCCC
Confidence            48999995 5567999999999999999999999998776    344565443  3689999999889999999533321


Q ss_pred             cccCCCCCCCCCCchhHHHHHHHHHHhhHHHHHHHHHhccccccchHHHHHHHHHHHHH
Q 029712           92 VGAGLGFSCLRGTNVDKDQVKAAIKAQQDQQIDNALLAEGRFYSDLELTEKEIECMVME  150 (189)
Q Consensus        92 ig~glg~~~~~p~~~dk~~~~~a~~~se~~~ie~a~l~dk~~~tD~e~t~~~ie~~v~~  150 (189)
                      -+          +.            +...++|+.|+.|+...||||.|.++.+-..|-
T Consensus       165 ~~----------~~------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (219)
T 3phu_A          165 TD----------TR------------EALSLMDRVIAVDQLTSSSSDELQDYEDLALAL  201 (219)
T ss_dssp             CS----------CC------------CCCCHHHHHHHHHHHHC----------------
T ss_pred             CC----------CC------------cchhHHHHHHHHHHHHhccHHhhhhHHHHHHHh
Confidence            11          11            123357888999999999999998887765543

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.72  E-value=8.1e-18  Score=138.74  Aligned_cols=69  Identities=13%  Similarity=0.127  Sum_probs=55.9

Q ss_pred             cHHHHHhhc-CCCCCCCHHHHHHHHHhhCCCEEEEecCCCc----eEEecCCCCCCCCcEEEEEcCCCCCccccCC
Q 029712           17 VVKRFVLTS-WMQVYGNNVEIQALCEMYNRPIHIYSYTTEP----INIFHGSYNTDNPPIRLSYHHGNHYNSLVDP   87 (189)
Q Consensus        17 ~fdeYc~~i-~d~~WGG~IELqALSe~y~~~I~Vy~~~~~~----i~if~e~~~~~~~~I~LsYh~G~HYNSV~~p   87 (189)
                      .|++||+++ ++++|||++||+|||++|+++|+||+.+.+.    +..|+++.  ..++|+|+|++|+|||||+..
T Consensus        87 ~~~~Y~~~m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~--~~~~I~L~Y~g~~HYdsl~~~  160 (185)
T 3phx_A           87 SLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGD--VFTAVNLLHSGQTHFDALRIL  160 (185)
T ss_dssp             CHHHHHHHHTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CCBCCEEEEESSCC--TTTSEEEEEETTTEEEEEEEC
T ss_pred             CHHHHHHHhhCCCccCcHHHHHHHHHHHCCcEEEEEecCCCCceEEEEcCCCC--CCCEEEEEECCCcCchhceEC
Confidence            489999954 5579999999999999999999999986544    55665443  368999999988999999843

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.44  E-value=1e-13  Score=117.67  Aligned_cols=70  Identities=19%  Similarity=0.283  Sum_probs=51.7

Q ss_pred             cHHHHHh-hcCC-CCCCCHHHHHHHHHhhCCCEEEEecCCCceEEecCCCC-CCCCcEEEEEcCCCCCccccCC
Q 029712           17 VVKRFVL-TSWM-QVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFHGSYN-TDNPPIRLSYHHGNHYNSLVDP   87 (189)
Q Consensus        17 ~fdeYc~-~i~d-~~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if~e~~~-~~~~~I~LsYh~G~HYNSV~~p   87 (189)
                      .|++||+ .++. ++|||||||+|||+++++||+|++.++.+-.+-...+. ...+.|+|+|+.| |||++++.
T Consensus       159 ~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~~~~~~I~LlY~pg-HYdily~~  231 (234)
T 1tff_A          159 DIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTS-HYNILYAA  231 (234)
T ss_dssp             CHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSSCSEEEEEETT-EEEEEEEC
T ss_pred             CHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCCCCCCeEEEEECCC-CceecccC
Confidence            5999999 6775 59999999999999999999999987765111111121 2467899999955 99999843

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.39  E-value=4e-13  Score=113.82  Aligned_cols=65  Identities=26%  Similarity=0.361  Sum_probs=52.3

Q ss_pred             cHHHHHh-hcCC-CCCCCHHHHHHHHHhhCCCEEEEecCCCc---eE--EecCCCCCCCCcEEEEEcCCCCCcccc
Q 029712           17 VVKRFVL-TSWM-QVYGNNVEIQALCEMYNRPIHIYSYTTEP---IN--IFHGSYNTDNPPIRLSYHHGNHYNSLV   85 (189)
Q Consensus        17 ~fdeYc~-~i~d-~~WGG~IELqALSe~y~~~I~Vy~~~~~~---i~--if~e~~~~~~~~I~LsYh~G~HYNSV~   85 (189)
                      .+++||+ .++. ++||||+||+|||++|++||+|++.+..+   ++  .|.+   ...++|+|+|+.| |||+++
T Consensus       162 ~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~---~~~p~I~LlY~pg-HYdiLy  233 (234)
T 2zfy_A          162 TVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE---GSEPKVYLLYRPG-HYDILY  233 (234)
T ss_dssp             CHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST---TCCCSEEEEEETT-EEEEEE
T ss_pred             CHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC---CCCCeEEEEECCC-CcccCC
Confidence            4899998 4775 69999999999999999999999987653   32  3422   2467899999966 999986

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.15  E-value=3.9e-11  Score=105.19  Aligned_cols=72  Identities=14%  Similarity=0.158  Sum_probs=53.9

Q ss_pred             cHHHHHh-hcCC-CCCCCHHHHHHHHHhhCCCEEEEecCCCc---e--EE-ecCCCCCCCCcEEEEEcCCCCCccccCCC
Q 029712           17 VVKRFVL-TSWM-QVYGNNVEIQALCEMYNRPIHIYSYTTEP---I--NI-FHGSYNTDNPPIRLSYHHGNHYNSLVDPR   88 (189)
Q Consensus        17 ~fdeYc~-~i~d-~~WGG~IELqALSe~y~~~I~Vy~~~~~~---i--~i-f~e~~~~~~~~I~LsYh~G~HYNSV~~p~   88 (189)
                      .+++||+ +++. ++|||||||+|||++|++||.|...+..+   +  .+ |.++.....+.|+|.|. +.|||-|+ |.
T Consensus       197 ~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~fp~~~~~~~p~I~LLYr-pgHYDILY-~~  274 (284)
T 4dhi_B          197 TVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDIPSDDQQIAPEITLLYR-PGHYDVIY-KK  274 (284)
T ss_dssp             CHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEESCCCSCCCCSEEEEEE-TTEEEEEE-EC
T ss_pred             CHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccCCCCCCCCCCEEEEeec-CCCccccc-cC
Confidence            3899999 7887 59999999999999999999999886421   1  12 42222223478999997 67999998 44


Q ss_pred             CC
Q 029712           89 RM   90 (189)
Q Consensus        89 ~~   90 (189)
                      .|
T Consensus       275 ~p  276 (284)
T 4dhi_B          275 DS  276 (284)
T ss_dssp             C-
T ss_pred             CC
Confidence            33

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=98.86  E-value=1.7e-09  Score=97.54  Aligned_cols=65  Identities=26%  Similarity=0.367  Sum_probs=51.3

Q ss_pred             cHHHHHh-hcCC-CCCCCHHHHHHHHHhhCCCEEEEecCCC---ceE--EecCCCCCCCCcEEEEEcCCCCCcccc
Q 029712           17 VVKRFVL-TSWM-QVYGNNVEIQALCEMYNRPIHIYSYTTE---PIN--IFHGSYNTDNPPIRLSYHHGNHYNSLV   85 (189)
Q Consensus        17 ~fdeYc~-~i~d-~~WGG~IELqALSe~y~~~I~Vy~~~~~---~i~--if~e~~~~~~~~I~LsYh~G~HYNSV~   85 (189)
                      .+++||+ .++. ++||||+||+|||++|+++|.|+..+..   .++  .+ ++  ...+.|+|.|..| |||.++
T Consensus       327 ~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~-~~--~~~~~I~LLYrPg-HYDiLY  398 (399)
T 4ddg_A          327 TVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIF-PE--GSEPKVYLLYRPG-HYDILY  398 (399)
T ss_dssp             CHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEET-TT--TCCCCCEEEEETB-EEEEEE
T ss_pred             CHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeC-CC--CCCCEEEEEEcCC-ccccCC
Confidence            3899999 7887 5999999999999999999999876542   222  23 22  2478899999755 999886

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=88.24  E-value=0.74  Score=42.58  Aligned_cols=55  Identities=25%  Similarity=0.434  Sum_probs=38.1

Q ss_pred             HHHHHHHHHhhCCCEEEEecCC---------CceE---EecCCCC----CCCCcEEEEEcCCCCCccccCCC
Q 029712           33 NVEIQALCEMYNRPIHIYSYTT---------EPIN---IFHGSYN----TDNPPIRLSYHHGNHYNSLVDPR   88 (189)
Q Consensus        33 ~IELqALSe~y~~~I~Vy~~~~---------~~i~---if~e~~~----~~~~~I~LsYh~G~HYNSV~~p~   88 (189)
                      ++=+-+||++++|||.||....         .|+.   ||.+-.-    =.+.||.|.|.+| ||-+++...
T Consensus       280 eiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~g-HFsaLV~~~  350 (454)
T 3zrh_A          280 QTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTRG-HFSALVAME  350 (454)
T ss_dssp             HHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEETT-EEEEEEEBC
T ss_pred             HHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEeccc-ceeeeeecc
Confidence            6778899999999999998632         1222   2211100    1357999999965 999998544

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=82.06  E-value=1.6  Score=39.77  Aligned_cols=55  Identities=29%  Similarity=0.536  Sum_probs=37.5

Q ss_pred             HHHHHHHHHhhCCCEEEEecC-------CC---ceE---EecCC----CCCCCCcEEEEEcCCCCCccccCCC
Q 029712           33 NVEIQALCEMYNRPIHIYSYT-------TE---PIN---IFHGS----YNTDNPPIRLSYHHGNHYNSLVDPR   88 (189)
Q Consensus        33 ~IELqALSe~y~~~I~Vy~~~-------~~---~i~---if~e~----~~~~~~~I~LsYh~G~HYNSV~~p~   88 (189)
                      ++=+-+||++++|||.||...       ++   |+.   ||-+-    ..=.+.||.|.|.+ .||.+++...
T Consensus       213 eiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~LgY~s-~HFsaLV~me  284 (390)
T 3dkb_A          213 EIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDS-HHFVPLVTLK  284 (390)
T ss_dssp             HHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEEECS-SCEEEEEEBC
T ss_pred             HHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEEecc-Cceeeeeecc
Confidence            777899999999999999632       11   221   22111    01136799999996 6999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	189
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	8e-12

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (144), Expect = 8e-12
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 27  MQVYGNNVEIQALCEMYNRPIHIYSYTTEPINI-FHGSYNTDNPPIRLSYHHGNHYNSL 84
           M    ++++I AL +  +  + +         +  H       P + L Y    HYN L
Sbjct: 165 MATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYKTS-HYNIL 222

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.24

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=5.1e-12  Score=103.74  Aligned_cols=70  Identities=19%  Similarity=0.232  Sum_probs=51.2

Q ss_pred             cHHHHHhh-cCC-CCCCCHHHHHHHHHhhCCCEEEEecCCCceEEec-CCCCCCCCcEEEEEcCCCCCccccCC
Q 029712           17 VVKRFVLT-SWM-QVYGNNVEIQALCEMYNRPIHIYSYTTEPINIFH-GSYNTDNPPIRLSYHHGNHYNSLVDP   87 (189)
Q Consensus        17 ~fdeYc~~-i~d-~~WGG~IELqALSe~y~~~I~Vy~~~~~~i~if~-e~~~~~~~~I~LsYh~G~HYNSV~~p   87 (189)
                      .+++||.+ +.. ++||||+||+|||++|+++|.|+..+..+..+.. .......++|+|+|. +.|||.|++.
T Consensus       153 ~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~~~~~~~I~Lly~-pgHYdiLY~~  225 (228)
T d1tffa_         153 DIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLYK-TSHYNILYAA  225 (228)
T ss_dssp             CHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSSCSEEEEEE-TTEEEEEEEC
T ss_pred             cHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCCCCCCCEEEEEeC-CCCcccCccC
Confidence            47899984 665 7999999999999999999999988754433221 112245779999997 5699999844