Citrus Sinensis ID: 029759

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLTEEKLKS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHccccccHHHHHHHHHHHHccHHHcccccccccccccccHHHHHHHHHcccEEEEcccHHHHHHccccccEEccccccccccccccHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHcccccEEccccHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHcccEEEEcccHHHHHHccccccEEEcEEEcccccccccHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHcccccEEccHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MEATSLISLssfaagasslppvlcphgnnrrgllSLTVdqqrcdnigfisskilsfcpkaslrgnleavgvptsvPVRVAHELLQAGhryldvrtpeefsaghatgainvpymyrvgsgmtknLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSthanypskpltwflsnqllteeklks
Flexible Loop (DISEMBL)
MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEvstrfrkhdeiivGCQSGKRSMMAATDLLNAVSTHANYPSKPLtwflsnqllteeklks
Low Complexity Region (SEG)
MEATslislssfaagasslPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLTEEKLKS
Disordered region (IsUnstruct)
********************PVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQL********
Disordered Region (DISOPRED)
********LSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFC*****************VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTK*****EE*STRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLTWFLS***********
Disordered Region (DISEMBL)
********LSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLTEEKLKS
Disordered Region (DISPRO)
*****************SLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLT******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLTEEKLKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
Q38853	182	Rhodanese-like domain-con	no	no	0.925	0.956	0.484	3e-38
P27626	183	Senescence-associated pro	N/A	no	0.601	0.617	0.610	8e-34
Q39129	120	Thiosulfate sulfurtransfe	no	no	0.478	0.75	0.711	8e-31
Q9FKW8	136	Thiosulfate sulfurtransfe	no	no	0.462	0.639	0.505	2e-18
Q8RUD6	169	Rhodanese-like domain-con	no	no	0.484	0.538	0.417	4e-15
F4IPI4	156	Rhodanese-like domain-con	no	no	0.462	0.557	0.382	2e-10
Q94A65	224	Rhodanese-like domain-con	no	no	0.388	0.325	0.336	0.0005

>sp|Q38853|STR15_ARATH Rhodanese-like domain-containing protein 15, chloroplastic OS=Arabidopsis thaliana GN=STR15 PE=2 SV=1

 Score =  157 bits (398), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/192 (48%), Positives = 117/192 (60%), Gaps = 18/192 (9%)

Query: 1   MEATSLISLSSFAAGASSLPPVLCPHGN------NRRGLLSLTVDQQRCDNIGFISSKIL 54
           ME T+  + S     +S++ P L   G+       RRG++   V   R  N  +  +   
Sbjct: 1   METTAFNTTSRIGNWSSAISPPLQTCGSFKCQLPTRRGVI---VADLRNSNFRWRKATTT 57

Query: 55  SFCPKASLRGNL--EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112
           S       RGN+  EAV +PTSVPVRVA EL QAG+RYLDVRTP+EFS GH T AINVPY
Sbjct: 58  S-------RGNVAAEAVKIPTSVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPY 110

Query: 113 MYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL 172
           MYRVGSGM KN  F+ +VS+ FRKHDEII+GC+SG+ S MA+TDLL A  T     +   
Sbjct: 111 MYRVGSGMVKNPSFLRQVSSHFRKHDEIIIGCESGQMSFMASTDLLTAGFTAITDIAGGY 170

Query: 173 TWFLSNQLLTEE 184
             +  N+L  EE
Sbjct: 171 VAWTENELPVEE 182

Arabidopsis thaliana (taxid: 3702)

>sp|P27626|DIN1_RAPSA Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1 PE=2 SV=1

 Score =  143 bits (360), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 69/113 (61%), Positives = 86/113 (76%)

Query: 72  PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 131
           PTSVPVRVA EL QAG+++LDVRTP+EFS GH + AINVPYMYRVGSGM KN  F+ +VS
Sbjct: 71  PTSVPVRVARELAQAGYKHLDVRTPDEFSIGHPSRAINVPYMYRVGSGMVKNPSFLRQVS 130

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLTEE 184
           + FRKHDEII+GC+SG+RS+MA+T+LL A  T     +     +  N+L  EE
Sbjct: 131 SHFRKHDEIIIGCESGERSLMASTELLTAGFTGVTDIAGGYVPWTENELPVEE 183

Is thought to act during the early stages of leaf senescence.

Raphanus sativus (taxid: 3726)

>sp|Q39129|STR16_ARATH Thiosulfate sulfurtransferase 16, chloroplastic OS=Arabidopsis thaliana GN=STR16 PE=1 SV=2

 Score =  133 bits (334), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 73/90 (81%)

Query: 71  VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
           VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F+E+V
Sbjct: 7   VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNPDFLEQV 66

Query: 131 STRFRKHDEIIVGCQSGKRSMMAATDLLNA 160
           S+ F + D IIVGCQSG RS+ A TDLL+A
Sbjct: 67  SSHFGQSDNIIVGCQSGGRSIKATTDLLHA 96

Thought to act during the early stages of leaf senescence. Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9FKW8|STR18_ARATH Thiosulfate sulfurtransferase 18 OS=Arabidopsis thaliana GN=STR18 PE=1 SV=1

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/89 (50%), Positives = 59/89 (66%), Gaps = 2/89 (2%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVS 131
           SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM     G  KN +F+E+VS
Sbjct: 16  SVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVS 75

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLNA 160
           +     D+I+VGCQSG RS+ A T+L+ A
Sbjct: 76  SLLNPADDILVGCQSGARSLKATTELVAA 104

Catalyzes the transfer of a sulfur ion from a donor to cyanide or to other thiol compounds. Substrate preference is thiosulfate > 3-mercaptopyruvate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8RUD6|STR19_ARATH Rhodanese-like domain-containing protein 19, mitochondrial OS=Arabidopsis thaliana GN=STR19 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 52/91 (57%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
           +V V  A   L  GHRYLDVRT EEF+  H   A+N+PYM++   G   N  F+ +V++ 
Sbjct: 43  TVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQVASV 102

Query: 134 FRKHDEIIVGCQSGKRSMMAATDLLNAVSTH 164
            +K + +IV C +G R   A  DLLN    H
Sbjct: 103 CKKDEHLIVACNAGGRGSRACVDLLNEGYDH 133

Arabidopsis thaliana (taxid: 3702)

>sp|F4IPI4|STR17_ARATH Rhodanese-like domain-containing protein 17 OS=Arabidopsis thaliana GN=STR17 PE=2 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 2/89 (2%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGH--ATGAINVPYMYRVGSGMTKNLKFVEEVS 131
           ++ V  A +LL +G+ +LDVRT EEF  GH  +    NVPY      G   N  F++ VS
Sbjct: 34  TIDVNQAQKLLDSGYTFLDVRTVEEFKKGHVDSENVFNVPYWLYTPQGQEINPNFLKHVS 93

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLNA 160
           +   + D +I+GC+SG RS+ A   L+++
Sbjct: 94  SLCNQTDHLILGCKSGVRSLHATKFLVSS 122

Arabidopsis thaliana (taxid: 3702)

>sp|Q94A65|STR14_ARATH Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1

 Score = 44.3 bits (103), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 43/95 (45%), Gaps = 22/95 (23%)

Query: 74  SVPVRVAHELLQAGH-RYLDVRTPEEFSAGHATGAINVPYMYR----------------- 115
           SV V+ A  L +  +   LDVR   E+ AGH  GAINV  MYR                 
Sbjct: 76  SVDVKEAQRLQKENNFVILDVRPEAEYKAGHPPGAINVE-MYRLIREWTAWDIARRLGFA 134

Query: 116 ---VGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG 147
              + SG  +N +F++ V  +  K  +IIV C S 
Sbjct: 135 FFGIFSGTEENPEFIQSVEAKLDKEAKIIVACSSA 169

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
224133954	180	predicted protein [Populus trichocarpa]	0.824	0.861	0.689	1e-52
255579783	182	Senescence-associated protein DIN1, puta	0.957	0.989	0.630	9e-52
359497218	177	PREDICTED: senescence-associated protein	0.675	0.717	0.674	8e-42
351728052	186	uncharacterized protein LOC100305968 [Gl	0.595	0.602	0.741	1e-41
351726216	185	uncharacterized protein LOC100499831 [Gl	0.595	0.605	0.741	1e-40
357483967	185	Senescence-associated protein DIN1 [Medi	0.723	0.735	0.642	2e-40
388501622	179	unknown [Lotus japonicus]	0.585	0.614	0.729	4e-40
449434108	184	PREDICTED: rhodanese-like domain-contain	0.728	0.744	0.638	2e-38
7340289	150	OP1 [Cucumis sativus]	0.659	0.826	0.650	2e-37
145334233	177	senescence-associated protein DIN1 [Arab	0.835	0.887	0.514	2e-37

>gi|224133954|ref|XP_002327720.1| predicted protein [Populus trichocarpa] gi|222836805|gb|EEE75198.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 111/161 (68%), Positives = 128/161 (79%), Gaps = 6/161 (3%)

Query: 1   MEATSLISLSSFAAGASSLPPVLCPHG-NNRRGLLSLTVDQQRCDNIGFISSKILSFCPK 59
           M A +++   S +  +++L PVLCP   N RRG+ +  V+ +RC +I  I+ K LSF PK
Sbjct: 1   MAAKAVVCYGS-STSSTTLRPVLCPQQLNKRRGVFA--VNSRRC-SIN-INHKSLSFRPK 55

Query: 60  ASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG 119
            SLR NLEA G+PTSVPVRVAHEL QAGHRYLDVRTP+EFS GHA GAIN+PYMYRVGSG
Sbjct: 56  TSLRWNLEATGIPTSVPVRVAHELHQAGHRYLDVRTPDEFSTGHAAGAINIPYMYRVGSG 115

Query: 120 MTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA 160
           MTKN KFVEEVS+ FRKHDEIIVGCQ GKRSMMAATDLL A
Sbjct: 116 MTKNPKFVEEVSSHFRKHDEIIVGCQLGKRSMMAATDLLAA 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579783|ref|XP_002530729.1| Senescence-associated protein DIN1, putative [Ricinus communis] gi|223529693|gb|EEF31635.1| Senescence-associated protein DIN1, putative [Ricinus communis]

 Score =  208 bits (529), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 116/184 (63%), Positives = 137/184 (74%), Gaps = 4/184 (2%)

Query: 1   MEATSLISLSSFAAGASSLPPVLCPHGNNRRGLLSLT-VDQQRCDNIGFISSKILSFCPK 59
           MEA S++S ++F +  +SL P  CP   N R LL L  ++  R  +IG I+ K +SFCPK
Sbjct: 1   MEAKSIVSSATFTS--TSLCPSFCPSNLNNRKLLLLPLINNPRRLSIG-INQKSVSFCPK 57

Query: 60  ASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG 119
           A LRGNLEAVGVPTSVPVRVAHELL AGHRYLDVRTPEEFSAGH  GAIN+PYMYRVGSG
Sbjct: 58  AGLRGNLEAVGVPTSVPVRVAHELLLAGHRYLDVRTPEEFSAGHVVGAINIPYMYRVGSG 117

Query: 120 MTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQ 179
           M KN KF+E+VS+ F K++EII+GCQSGKRSMMAATDLL+A  T     +     +  N 
Sbjct: 118 MKKNTKFLEQVSSHFGKYNEIIIGCQSGKRSMMAATDLLSAGYTAVTDIAGGYAAWTQNG 177

Query: 180 LLTE 183
           L TE
Sbjct: 178 LPTE 181

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497218|ref|XP_002271073.2| PREDICTED: senescence-associated protein DIN1-like [Vitis vinifera] gi|296088206|emb|CBI35721.3| unnamed protein product [Vitis vinifera]

 Score =  175 bits (443), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 89/132 (67%), Positives = 97/132 (73%), Gaps = 5/132 (3%)

Query: 29  NRRGLLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGH 88
           N R L  L  + QRC     +      FC   + RGNLE+ GVPTSVPVRVA ELLQAGH
Sbjct: 27  NFRCLSPLKANPQRC-----VVGGTKRFCRVVAARGNLESTGVPTSVPVRVALELLQAGH 81

Query: 89  RYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK 148
           RYLDVRTPEEFSAGHA+GAINVPYM R GSGM KN KF+ EVS+ FRK DEIIVGCQ GK
Sbjct: 82  RYLDVRTPEEFSAGHASGAINVPYMLRFGSGMAKNPKFLVEVSSHFRKDDEIIVGCQKGK 141

Query: 149 RSMMAATDLLNA 160
           RS+MA  DLL A
Sbjct: 142 RSLMAVNDLLAA 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728052|ref|NP_001235646.1| uncharacterized protein LOC100305968 [Glycine max] gi|255627141|gb|ACU13915.1| unknown [Glycine max]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 83/112 (74%), Positives = 96/112 (85%)

Query: 49  ISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAI 108
           +  K  +F  +ASL+GNLEA+ VPTSVPVRVA+ELL AGHRYLDVRTPEEF AGHA GAI
Sbjct: 51  VPPKFPNFRREASLQGNLEAIRVPTSVPVRVAYELLLAGHRYLDVRTPEEFDAGHAPGAI 110

Query: 109 NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA 160
           N+PYM+RVGSGMTKN  F+ EVS++FRK DEIIVGC+ GKRSMMAA+DLL A
Sbjct: 111 NIPYMFRVGSGMTKNSNFIREVSSQFRKDDEIIVGCELGKRSMMAASDLLAA 162

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726216|ref|NP_001236607.1| uncharacterized protein LOC100499831 [Glycine max] gi|255626991|gb|ACU13840.1| unknown [Glycine max]

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 83/112 (74%), Positives = 95/112 (84%)

Query: 49  ISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAI 108
           +  K  SF  +A+L+GNLEAV VPTSVPVRVA+ELL AGHRYLDV TPEEF+AGHA GAI
Sbjct: 50  VPPKFPSFRREAALQGNLEAVRVPTSVPVRVAYELLLAGHRYLDVGTPEEFNAGHAPGAI 109

Query: 109 NVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA 160
           N+PYM+RVGSGMTKN  F+ EVS+ FRK DEIIVGC+ GKRSMMAA+DLL A
Sbjct: 110 NIPYMFRVGSGMTKNSNFIREVSSNFRKEDEIIVGCELGKRSMMAASDLLAA 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483967|ref|XP_003612270.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|217071246|gb|ACJ83983.1| unknown [Medicago truncatula] gi|355513605|gb|AES95228.1| Senescence-associated protein DIN1 [Medicago truncatula] gi|388495624|gb|AFK35878.1| unknown [Medicago truncatula]

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/137 (64%), Positives = 101/137 (73%), Gaps = 1/137 (0%)

Query: 49  ISSKILSFCPKASLRGNLE-AVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA 107
           +  K  +F     L+GNLE  VGVPTSVPVRVAHELL AGH+YLDVRT EEF+AGHA GA
Sbjct: 49  VQPKFSNFRTMCGLKGNLEEVVGVPTSVPVRVAHELLLAGHKYLDVRTTEEFNAGHAPGA 108

Query: 108 INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANY 167
           IN+PYMY+VGSGMTKN  FV+EVS+ FRK DE+IVGCQ GKRSMMAATDLL A  T    
Sbjct: 109 INIPYMYKVGSGMTKNSNFVKEVSSHFRKEDEVIVGCQLGKRSMMAATDLLAAGFTGLTD 168

Query: 168 PSKPLTWFLSNQLLTEE 184
            +     +  N L TE+
Sbjct: 169 IAGGYAAWTQNGLPTEQ 185

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501622|gb|AFK38877.1| unknown [Lotus japonicus]

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 81/111 (72%), Positives = 93/111 (83%), Gaps = 1/111 (0%)

Query: 49  ISSKILSFCPKASLRGNLEAVGV-PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA 107
           +  K  +F  + ++  NLEAVGV PTSVPVRVAHELL AGH+YLDVRTPEEF AGHA GA
Sbjct: 43  VQPKFQTFRVEGAMNQNLEAVGVVPTSVPVRVAHELLLAGHKYLDVRTPEEFDAGHAPGA 102

Query: 108 INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLL 158
           IN+PYM++VGSGMTKN  FV+E S++FRK DEIIVGCQ GKRSMMAATDLL
Sbjct: 103 INIPYMFKVGSGMTKNSNFVKEASSQFRKEDEIIVGCQLGKRSMMAATDLL 153

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434108|ref|XP_004134838.1| PREDICTED: rhodanese-like domain-containing protein 15, chloroplastic-like [Cucumis sativus] gi|449491287|ref|XP_004158850.1| PREDICTED: rhodanese-like domain-containing protein 15, chloroplastic-like [Cucumis sativus]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/141 (63%), Positives = 99/141 (70%), Gaps = 4/141 (2%)

Query: 22  VLCPHGNN--RRGLL--SLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPV 77
           +L P+ NN   RG L   +T   QR      IS K  S    A LR  LEA  VPTSVPV
Sbjct: 18  LLLPNTNNLTSRGRLLPMITGSLQRRRRDSAISYKHWSTSRNAVLREELEATAVPTSVPV 77

Query: 78  RVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 137
           RVA ELLQAG RYLDVRTPEE+S GHA GAIN+PYMYRVGSGMT+N  F+ EV+  FRK 
Sbjct: 78  RVALELLQAGQRYLDVRTPEEYSVGHAPGAINIPYMYRVGSGMTRNPHFLAEVAIYFRKD 137

Query: 138 DEIIVGCQSGKRSMMAATDLL 158
           DEIIVGC SGKRS+MAA DLL
Sbjct: 138 DEIIVGCLSGKRSLMAAADLL 158

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7340289|gb|AAF61174.1|AF245222_1 OP1 [Cucumis sativus]

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/126 (65%), Positives = 96/126 (76%), Gaps = 2/126 (1%)

Query: 33  LLSLTVDQQRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLD 92
           +++ ++ ++R D+   IS K  S    A LR  LEA  VPTSVPVRVA ELLQAG RYLD
Sbjct: 1   MITGSLQRRRRDSA--ISYKHWSTSRNAVLREELEATAVPTSVPVRVALELLQAGQRYLD 58

Query: 93  VRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM 152
           VRTPEE+S GHA GAIN+PYMYRVGSGMT+N  F+ EV+  FRK DEIIVGC SGKRS+M
Sbjct: 59  VRTPEEYSVGHAPGAINIPYMYRVGSGMTRNPHFLAEVAIYFRKDDEIIVGCLSGKRSLM 118

Query: 153 AATDLL 158
           AA DLL
Sbjct: 119 AAADLL 124

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334233|ref|NP_001078497.1| senescence-associated protein DIN1 [Arabidopsis thaliana] gi|332661162|gb|AEE86562.1| senescence-associated protein DIN1 [Arabidopsis thaliana]

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/175 (51%), Positives = 113/175 (64%), Gaps = 18/175 (10%)

Query: 1   MEATSLISLSSFAAGASSLPPVLCPHGN------NRRGLLSLTVDQQRCDNIGFISSKIL 54
           ME T+  + S     +S++ P L   G+       RRG++   V   R  N  +  +   
Sbjct: 1   METTAFNTTSRIGNWSSAISPPLQTCGSFKCQLPTRRGVI---VADLRNSNFRWRKATTT 57

Query: 55  SFCPKASLRGNL--EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPY 112
           S       RGN+  EAV +PTSVPVRVA EL QAG+RYLDVRTP+EFS GH T AINVPY
Sbjct: 58  S-------RGNVAAEAVKIPTSVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPY 110

Query: 113 MYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANY 167
           MYRVGSGM KN  F+ +VS+ FRKHDEII+GC+SG+ S MA+TDLL AV  H ++
Sbjct: 111 MYRVGSGMVKNPSFLRQVSSHFRKHDEIIIGCESGQMSFMASTDLLTAVWLHGDH 165

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
TAIR|locus:2128038	182	SEN1 "AT4G35770" [Arabidopsis	0.643	0.664	0.632	5.1e-35
UNIPROTKB|B2C7Y6	185	NRIP1 "Chloroplast N receptor-	0.632	0.643	0.633	1.8e-32
TAIR|locus:2156937	120	STR16 "AT5G66040" [Arabidopsis	0.478	0.75	0.711	1.2e-28
TAIR|locus:2156882	138	STR18 "AT5G66170" [Arabidopsis	0.659	0.898	0.435	1.9e-19
TAIR|locus:505006261	169	AT2G21045 [Arabidopsis thalian	0.537	0.597	0.401	2e-15
TAIR|locus:2827795	156	AT2G17850 "AT2G17850" [Arabido	0.696	0.839	0.316	5e-12
UNIPROTKB|Q8ECN1	132	SO_3105 "Periplasmic rhodanese	0.420	0.598	0.366	8.7e-08
TIGR_CMR|SO_3105	132	SO_3105 "phage shock protein E	0.420	0.598	0.366	8.7e-08
UNIPROTKB|Q607E4	120	MCA1816 "Sulfurtransferase" [M	0.308	0.483	0.471	1.3e-06
UNIPROTKB|F1MW03	114	TSTD1 "Uncharacterized protein	0.441	0.728	0.360	2.7e-05

TAIR|locus:2128038 SEN1 "AT4G35770" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
 Identities = 79/125 (63%), Positives = 93/125 (74%)

Query:    63 RGNL--EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGM 120
             RGN+  EAV +PTSVPVRVA EL QAG+RYLDVRTP+EFS GH T AINVPYMYRVGSGM
Sbjct:    59 RGNVAAEAVKIPTSVPVRVARELAQAGYRYLDVRTPDEFSIGHPTRAINVPYMYRVGSGM 118

Query:   121 TKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTH-ANYPSKPLTWFLSNQ 179
              KN  F+ +VS+ FRKHDEII+GC+SG+ S MA+TDLL A  T   +     + W   N+
Sbjct:   119 VKNPSFLRQVSSHFRKHDEIIIGCESGQMSFMASTDLLTAGFTAITDIAGGYVAW-TENE 177

Query:   180 LLTEE 184
             L  EE
Sbjct:   178 LPVEE 182

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=IEP;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

UNIPROTKB|B2C7Y6 NRIP1 "Chloroplast N receptor-interacting protein 1" [Nicotiana benthamiana (taxid:4100)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 76/120 (63%), Positives = 87/120 (72%)

Query:    41 QRCDNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFS 100
             Q+  N G  S++   F   A++   ++   VPTSVPVRVA ELLQAGHRYLDVRT EEFS
Sbjct:    43 QKRRNFGN-SNRTPGFSWMATVGEKVQVSTVPTSVPVRVALELLQAGHRYLDVRTAEEFS 101

Query:   101 AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA 160
              GHA GAIN+PYM+R+GSGM KN  F E+V   F K DEIIVGCQ GKRS MAATDLL A
Sbjct:   102 DGHAPGAINIPYMFRIGSGMIKNPNFAEQVLEHFGKDDEIIVGCQLGKRSFMAATDLLAA 161

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2156937 STR16 "AT5G66040" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 64/90 (71%), Positives = 73/90 (81%)

Query:    71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
             VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F+E+V
Sbjct:     7 VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNPDFLEQV 66

Query:   131 STRFRKHDEIIVGCQSGKRSMMAATDLLNA 160
             S+ F + D IIVGCQSG RS+ A TDLL+A
Sbjct:    67 SSHFGQSDNIIVGCQSGGRSIKATTDLLHA 96

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

TAIR|locus:2156882 STR18 "AT5G66170" [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 57/131 (43%), Positives = 77/131 (58%)

Query:    61 SLRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGS 118
             S+  + +A  V  SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM     
Sbjct:     4 SISSSTKAEEV-VSVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQ 62

Query:   119 GMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA---NYPSKPLTWF 175
             G  KN +F+E+VS+     D+I+VGCQSG RS+ A T+L+ AVS +    N     L W 
Sbjct:    63 GRVKNQEFLEQVSSLLNPADDILVGCQSGARSLKATTELVAAVSGYKKVRNVGGGYLAWV 122

Query:   176 -LSNQLLTEEK 185
               S  + TEE+
Sbjct:   123 DHSFPINTEEE 133

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0004792 "thiosulfate sulfurtransferase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:505006261 AT2G21045 [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 41/102 (40%), Positives = 55/102 (53%)

Query:    74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
             +V V  A   L  GHRYLDVRT EEF+  H   A+N+PYM++   G   N  F+ +V++ 
Sbjct:    43 TVDVYTAKGFLSTGHRYLDVRTNEEFAKSHVEEALNIPYMFKTDEGRVINPDFLSQVASV 102

Query:   134 FRKHDEIIVGCQSGKRSMMAATDLLNAVSTH-ANYPSKPLTW 174
              +K + +IV C +G R   A  DLLN    H AN       W
Sbjct:   103 CKKDEHLIVACNAGGRGSRACVDLLNEGYDHVANMGGGYSAW 144

GO:0005737 "cytoplasm" evidence=ISM

GO:0007568 "aging" evidence=ISS;TAS

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2827795 AT2G17850 "AT2G17850" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 43/136 (31%), Positives = 68/136 (50%)

Query:    44 DNIGFISSKILSFCPKASLRGNLEAVGVPTSVPVRV--AHELLQAGHRYLDVRTPEEFSA 101
             D++  + S +L F     L     ++  P  + + V  A +LL +G+ +LDVRT EEF  
Sbjct:     2 DSLHVLRSFLLLFIVFNHLPRTTTSMSEPKVITIDVNQAQKLLDSGYTFLDVRTVEEFKK 61

Query:   102 GH--ATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLN 159
             GH  +    NVPY      G   N  F++ VS+   + D +I+GC+SG RS+ A   L++
Sbjct:    62 GHVDSENVFNVPYWLYTPQGQEINPNFLKHVSSLCNQTDHLILGCKSGVRSLHATKFLVS 121

Query:   160 A-VSTHANYPSKPLTW 174
             +   T  N     + W
Sbjct:   122 SGFKTVRNMDGGYIAW 137

GO:0003674 "molecular_function" evidence=ND

GO:0007568 "aging" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

UNIPROTKB|Q8ECN1 SO_3105 "Periplasmic rhodanese domain protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 33/90 (36%), Positives = 48/90 (53%)

Query:    78 RVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 137
             +VA E + +G   LDVRTPEEF+AGH   A+N+P+  +V +   K             K 
Sbjct:    38 QVAWEKIASGAMVLDVRTPEEFAAGHLVNAVNIPFE-QVAAEFAKR---------GIAKD 87

Query:   138 DEIIVGCQSGKRSMMAATDLLNAVSTHANY 167
               +++ C+SG+RS +A TD L A      Y
Sbjct:    88 TPVVLYCRSGRRSGIA-TDALVAAGYTKTY 116

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|SO_3105 SO_3105 "phage shock protein E" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 33/90 (36%), Positives = 48/90 (53%)

Query:    78 RVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 137
             +VA E + +G   LDVRTPEEF+AGH   A+N+P+  +V +   K             K 
Sbjct:    38 QVAWEKIASGAMVLDVRTPEEFAAGHLVNAVNIPFE-QVAAEFAKR---------GIAKD 87

Query:   138 DEIIVGCQSGKRSMMAATDLLNAVSTHANY 167
               +++ C+SG+RS +A TD L A      Y
Sbjct:    88 TPVVLYCRSGRRSGIA-TDALVAAGYTKTY 116

GO:0003674 "molecular_function" evidence=ND

GO:0009271 "phage shock" evidence=ISS

UNIPROTKB|Q607E4 MCA1816 "Sulfurtransferase" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 33/70 (47%), Positives = 43/70 (61%)

Query:    91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHDE-IIVGCQSGK 148
             LDVR PEE++AGH  GAIN+P       G+   ++F  E    F+ K D  I+V CQSG 
Sbjct:    34 LDVREPEEYAAGHLPGAINIP------RGV---VEFRIETHPVFQGKKDAAIVVYCQSGL 84

Query:   149 RSMMAATDLL 158
             RS +A TD+L
Sbjct:    85 RSTLA-TDIL 93

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1MW03 TSTD1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 99 (39.9 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 31/86 (36%), Positives = 42/86 (48%)

Query:    70 GVPT-SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE 128
             G PT S+P  +   L   G R  DVR+ EE +AG   GA+N+P      +   +   F  
Sbjct:     3 GEPTVSLP-ELRSLLASGGARLFDVRSREEAAAGTIPGALNIPVSELESALQMEPAAFKA 61

Query:   129 EVSTRFRKHDE-IIVGCQSGKRSMMA 153
               ST   K +E +I  CQ GKR + A
Sbjct:    62 LYSTEKPKLEENLIFFCQMGKRGLQA 87

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.8.1.1	0.824
3rd Layer	2.8.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_570018 hypothetical protein (181 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	188
PLN02160	136	PLN02160, PLN02160, thiosulfate sulfurtransferase	2e-24
pfam00581	106	pfam00581, Rhodanese, Rhodanese-like domain	2e-15
cd00158	89	cd00158, RHOD, Rhodanese Homology Domain (RHOD); a	8e-14
smart00450	100	smart00450, RHOD, Rhodanese Homology Domain	4e-13
cd01522	117	cd01522, RHOD_1, Member of the Rhodanese Homology	6e-10
cd01524	90	cd01524, RHOD_Pyr_redox, Member of the Rhodanese H	4e-09
PRK08762	376	PRK08762, PRK08762, molybdopterin biosynthesis pro	3e-08
COG0607	110	COG0607, PspE, Rhodanese-related sulfurtransferase	8e-08
PRK10287	104	PRK10287, PRK10287, thiosulfate:cyanide sulfurtran	2e-07
cd01519	106	cd01519, RHOD_HSP67B2, Member of the Rhodanese Hom	3e-07
TIGR02981	101	TIGR02981, phageshock_pspE, phage shock operon rho	9e-07
cd01527	99	cd01527, RHOD_YgaP, Member of the Rhodanese Homolo	2e-06
cd01449	118	cd01449, TST_Repeat_2, Thiosulfate sulfurtransfera	4e-06
COG2897	285	COG2897, SseA, Rhodanese-related sulfurtransferase	5e-06
PRK11784	345	PRK11784, PRK11784, tRNA 2-selenouridine synthase;	1e-04
cd01529	96	cd01529, 4RHOD_Repeats, Member of the Rhodanese Ho	1e-04
PRK05597	355	PRK05597, PRK05597, molybdopterin biosynthesis pro	4e-04
cd01534	95	cd01534, 4RHOD_Repeat_3, Member of the Rhodanese H	4e-04
cd01526	122	cd01526, RHOD_ThiF, Member of the Rhodanese Homolo	6e-04
TIGR03167	311	TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine s	0.002
PRK00162	108	PRK00162, glpE, thiosulfate sulfurtransferase; Val	0.004
cd01520	128	cd01520, RHOD_YbbB, Member of the Rhodanese Homolo	0.004

>gnl|CDD|177819 PLN02160, PLN02160, thiosulfate sulfurtransferase

 Score = 92.5 bits (229), Expect = 2e-24
 Identities = 49/114 (42%), Positives = 66/114 (57%), Gaps = 3/114 (2%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVS 131
           SV V  A  LLQ+GH+YLDVRT +EF  GH   A  +N+PYM     G  KN +F+E+VS
Sbjct: 16  SVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVS 75

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTH-ANYPSKPLTWFLSNQLLTEE 184
           +     D+I+VGCQSG RS+ A T+L+ A      N     L W   +  + +E
Sbjct: 76  SLLNPADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQE 129

Length = 136

>gnl|CDD|216005 pfam00581, Rhodanese, Rhodanese-like domain

 Score = 68.7 bits (168), Expect = 2e-15
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           +DVR+PEE++ GH  GA+N+P        +   L   EE+  +  K   I+V C SG RS
Sbjct: 17  IDVRSPEEYAKGHIPGAVNIPLSLPSLDKLESEL---EELGKKLDKDKTIVVYCASGNRS 73

Query: 151 MMAATDLLNAVSTHANYP 168
             AA  LL  +     Y 
Sbjct: 74  GQAAALLLALILKALGYK 91

Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases. Length = 106

>gnl|CDD|238089 cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

 Score = 63.5 bits (155), Expect = 8e-14
 Identities = 31/82 (37%), Positives = 37/82 (45%), Gaps = 11/82 (13%)

Query: 80  AHELL-QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHD 138
             ELL       LDVR PEE++AGH  GAIN+P            L+          K  
Sbjct: 2   LKELLDDEDAVLLDVREPEEYAAGHIPGAINIPLS---------ELEE-RAALLELDKDK 51

Query: 139 EIIVGCQSGKRSMMAATDLLNA 160
            I+V C+SG RS  AA  L  A
Sbjct: 52  PIVVYCRSGNRSARAAKLLRKA 73

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins. Length = 89

>gnl|CDD|197731 smart00450, RHOD, Rhodanese Homology Domain

 Score = 62.1 bits (151), Expect = 4e-13
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 85  QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE--VSTRFRKHDEIIV 142
                 LDVR+PEE+  GH  GA+N+P    +      ++   EE        K   ++V
Sbjct: 2   DEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVV 61

Query: 143 GCQSGKRSMMAATDLLNA 160
            C+SG RS  AA  L   
Sbjct: 62  YCRSGNRSAKAAWLLREL 79

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions. Length = 100

>gnl|CDD|238780 cd01522, RHOD_1, Member of the Rhodanese Homology Domain superfamily, subgroup 1

 Score = 53.9 bits (130), Expect = 6e-10
 Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 80  AHELLQAGHR--YLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRK 136
           A  LLQA  +   +DVRT  E+   G    A++V +  +V   M  N  F+ E+  +  K
Sbjct: 6   AWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAW--QVYPDMEINPNFLAELEEKVGK 63

Query: 137 HDEIIVGCQSGKRSMMAATDLLNA 160
              +++ C+SG RS+ AA     A
Sbjct: 64  DRPVLLLCRSGNRSIAAAEAAAQA 87

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins. Length = 117

>gnl|CDD|238782 cd01524, RHOD_Pyr_redox, Member of the Rhodanese Homology Domain superfamily

 Score = 51.1 bits (123), Expect = 4e-09
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 18/72 (25%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR---KHDEIIVGCQSG 147
           +DVRTP+EF  GH  GAIN+P               ++E+  R     K  EIIV C  G
Sbjct: 17  IDVRTPQEFEKGHIKGAINIP---------------LDELRDRLNELPKDKEIIVYCAVG 61

Query: 148 KRSMMAATDLLN 159
            R  +AA  L  
Sbjct: 62  LRGYIAARILTQ 73

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain. Length = 90

>gnl|CDD|236337 PRK08762, PRK08762, molybdopterin biosynthesis protein MoeB; Validated

 Score = 51.9 bits (125), Expect = 3e-08
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 14/81 (17%)

Query: 80  AHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFRKHD 138
           A      G   +DVR   E ++G A GA+ +P              F+E  + T     D
Sbjct: 10  ARARAAQGAVLIDVREAHERASGQAEGALRIPR------------GFLELRIETHLPDRD 57

Query: 139 -EIIVGCQSGKRSMMAATDLL 158
            EI++ C SG RS  AA  L 
Sbjct: 58  REIVLICASGTRSAHAAATLR 78

Length = 376

>gnl|CDD|223680 COG0607, PspE, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 48.0 bits (114), Expect = 8e-08
 Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 11/89 (12%)

Query: 73  TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVS 131
           T      A  L       LDVR PEE+  GH  G AIN+P        +++       + 
Sbjct: 6   TISEDEAALLLAGEDAVLLDVREPEEYERGHIPGAAINIP--------LSELKAAENLLE 57

Query: 132 TRFRKHDEIIVGCQSGKRSMMAATDLLNA 160
                 D I+V C SG RS  AA  L  A
Sbjct: 58  --LPDDDPIVVYCASGVRSAAAAAALKLA 84

Length = 110

>gnl|CDD|182356 PRK10287, PRK10287, thiosulfate:cyanide sulfurtransferase; Provisional

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 19/105 (18%)

Query: 62  LRGNLEAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMT 121
            +  L A+ +  S+P       + A   ++DVR PE++   H  GAIN+P          
Sbjct: 2   FKKGLLALALVFSLP-------VFAAEHWIDVRVPEQYQQEHVQGAINIPL--------- 45

Query: 122 KNLKFVEEVSTRFR-KHDEIIVGCQSGKRSMMAATDLLNAVSTHA 165
           K +K  E ++T    K+D + + C +G++S  A   L     THA
Sbjct: 46  KEVK--ERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTHA 88

Length = 104

>gnl|CDD|238777 cd01519, RHOD_HSP67B2, Member of the Rhodanese Homology Domain superfamily

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 20/94 (21%)

Query: 92  DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH---------DEIIV 142
           DVR PEE   G   GAIN+P      S +   L   EE    F K           E+I 
Sbjct: 20  DVREPEELKTGKIPGAINIPL-----SSLPDALALSEE---EFEKKYGFPKPSKDKELIF 71

Query: 143 GCQSGKRSMMAATDLLNAVSTH--ANYPSKPLTW 174
            C++G RS  AA +L  ++      NYP   L W
Sbjct: 72  YCKAGVRS-KAAAELARSLGYENVGNYPGSWLDW 104

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized. Length = 106

>gnl|CDD|132026 TIGR02981, phageshock_pspE, phage shock operon rhodanese PspE

 Score = 45.0 bits (106), Expect = 9e-07
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 20/87 (22%)

Query: 84  LQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-----KHD 138
           L A   ++DVR PE++   H  GAIN+P               ++E+          K+D
Sbjct: 15  LFAAEHWIDVRIPEQYQQEHIQGAINIP---------------LKEIKEHIATAVPDKND 59

Query: 139 EIIVGCQSGKRSMMAATDLLNAVSTHA 165
            + + C +G++S MA   LL+   THA
Sbjct: 60  TVKLYCNAGRQSGMAKDILLDMGYTHA 86

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely. Length = 101

>gnl|CDD|238785 cd01527, RHOD_YgaP, Member of the Rhodanese Homology Domain superfamily

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 13/90 (14%)

Query: 73  TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST 132
           T++    A ELL  G   +D+R P+E+      GA  VP            L  +E    
Sbjct: 2   TTISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVP------------LSQLESEGL 49

Query: 133 RFRKHDEIIVGCQSGKRSMMAATDLLNAVS 162
                + II  C+SG R+   A + L A+S
Sbjct: 50  PLVGANAIIFHCRSGMRTQQNA-ERLAAIS 78

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases. Length = 99

>gnl|CDD|238726 cd01449, TST_Repeat_2, Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

 Score = 43.8 bits (104), Expect = 4e-06
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 22/78 (28%)

Query: 91  LDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMT--KNLKFVEEVSTRFRKH 137
           +D R+PE F            +GH  GA+N+P+     S +      K  EE+   F   
Sbjct: 18  VDARSPERFRGEVPEPRPGLRSGHIPGAVNIPW----TSLLDEDGTFKSPEELRALFAAL 73

Query: 138 -----DEIIVGCQSGKRS 150
                  +IV C SG  +
Sbjct: 74  GITPDKPVIVYCGSGVTA 91

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue. Length = 118

>gnl|CDD|225450 COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 17/75 (22%)

Query: 91  LDVRTPEEFS----------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH--- 137
           +D R+PE F           AGH  GAIN+P+   V  G     K  EE++  +      
Sbjct: 175 IDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLF--KSPEEIARLYADAGID 232

Query: 138 --DEIIVGCQSGKRS 150
              E+IV C SG R+
Sbjct: 233 PDKEVIVYCGSGVRA 247

Length = 285

>gnl|CDD|236982 PRK11784, PRK11784, tRNA 2-selenouridine synthase; Provisional

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 14/32 (43%), Positives = 19/32 (59%)

Query: 82  ELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
            L       +DVR+P EF+ GH  GAIN+P +
Sbjct: 10  ALFLNDTPLIDVRSPIEFAEGHIPGAINLPLL 41

Length = 345

>gnl|CDD|238787 cd01529, 4RHOD_Repeats, Member of the Rhodanese Homology Domain superfamily

 Score = 39.2 bits (91), Expect = 1e-04
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 6/74 (8%)

Query: 87  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQS 146
           G   LDVR  +E++AGH  G  ++P    V              +TR       ++ C  
Sbjct: 12  GTALLDVRAEDEYAAGHLPGKRSIPGAALVLRSQELQALEAPGRATR------YVLTCDG 65

Query: 147 GKRSMMAATDLLNA 160
              +  AA +LL  
Sbjct: 66  SLLARFAAQELLAL 79

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats. Length = 96

>gnl|CDD|235526 PRK05597, PRK05597, molybdopterin biosynthesis protein MoeB; Validated

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 14/69 (20%)

Query: 87  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE--VSTRFRKHDEIIVGC 144
           G   +DVR P EF+A    GA NVP            L  + E          DE++V C
Sbjct: 274 GVTLIDVREPSEFAAYSIPGAHNVP------------LSAIREGANPPSVSAGDEVVVYC 321

Query: 145 QSGKRSMMA 153
            +G RS  A
Sbjct: 322 AAGVRSAQA 330

Length = 355

>gnl|CDD|238792 cd01534, 4RHOD_Repeat_3, Member of the Rhodanese Homology Domain superfamily, repeat 3

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 91  LDVRTPEEFSAGHATGAINVP 111
            DVRTPEE+ AGH  G  + P
Sbjct: 20  FDVRTPEEYEAGHLPGFRHTP 40

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue. Length = 95

>gnl|CDD|238784 cd01526, RHOD_ThiF, Member of the Rhodanese Homology Domain superfamily

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 8/77 (10%)

Query: 82  ELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN--LKFVEEVSTRFRKH 137
            +LQAG  H  LDVR    F       AIN+P    +   ++K   LK ++E+     K 
Sbjct: 17  NILQAGKKHVLLDVRPKVHFEICRLPEAINIP----LSELLSKAAELKSLQELPLDNDKD 72

Query: 138 DEIIVGCQSGKRSMMAA 154
             I V C+ G  S  A 
Sbjct: 73  SPIYVVCRRGNDSQTAV 89

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains. Length = 122

>gnl|CDD|234132 TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 13/23 (56%), Positives = 18/23 (78%)

Query: 91  LDVRTPEEFSAGHATGAINVPYM 113
           +DVR+P EF+ GH  GAIN+P +
Sbjct: 6   IDVRSPAEFAEGHLPGAINLPLL 28

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene [Protein synthesis, tRNA and rRNA base modification]. Length = 311

>gnl|CDD|178908 PRK00162, glpE, thiosulfate sulfurtransferase; Validated

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 75  VPVRVAHELL-QAGHRYLDVRTPEEFSAGHATGA 107
           + V  AH+ L + G   +D+R P+ F+ GHA GA
Sbjct: 7   INVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGA 40

Length = 108

>gnl|CDD|238778 cd01520, RHOD_YbbB, Member of the Rhodanese Homology Domain superfamily

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 82  ELLQAGHRYLDVRTPEEFSAGHATGAINVPYM 113
            L +A    +DVR+P+EF  GH  GAIN+P +
Sbjct: 8   ALRKADGPLIDVRSPKEFFEGHLPGAINLPLL 39

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.95
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.93
PLN02160	136	thiosulfate sulfurtransferase	99.93
KOG1530	136	consensus Rhodanese-related sulfurtransferase [Ino	99.92
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.92
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.91
cd01533	109	4RHOD_Repeat_2 Member of the Rhodanese Homology Do	99.9
cd01527	99	RHOD_YgaP Member of the Rhodanese Homology Domain	99.9
PRK00162	108	glpE thiosulfate sulfurtransferase; Validated	99.89
cd01518	101	RHOD_YceA Member of the Rhodanese Homology Domain	99.88
cd01523	100	RHOD_Lact_B Member of the Rhodanese Homology Domai	99.88
cd01524	90	RHOD_Pyr_redox Member of the Rhodanese Homology Do	99.87
cd01534	95	4RHOD_Repeat_3 Member of the Rhodanese Homology Do	99.87
cd01519	106	RHOD_HSP67B2 Member of the Rhodanese Homology Doma	99.87
cd01521	110	RHOD_PspE2 Member of the Rhodanese Homology Domain	99.87
cd01528	101	RHOD_2 Member of the Rhodanese Homology Domain sup	99.87
cd01520	128	RHOD_YbbB Member of the Rhodanese Homology Domain	99.86
cd01444	96	GlpE_ST GlpE sulfurtransferase (ST) and homologs a	99.86
cd01449	118	TST_Repeat_2 Thiosulfate sulfurtransferase (TST),	99.86
cd01448	122	TST_Repeat_1 Thiosulfate sulfurtransferase (TST),	99.86
TIGR03865	162	PQQ_CXXCW PQQ-dependent catabolism-associated CXXC	99.86
cd01526	122	RHOD_ThiF Member of the Rhodanese Homology Domain	99.86
cd01447	103	Polysulfide_ST Polysulfide-sulfurtransferase - Rho	99.85
cd01535	145	4RHOD_Repeat_4 Member of the Rhodanese Homology Do	99.84
cd01522	117	RHOD_1 Member of the Rhodanese Homology Domain sup	99.84
cd01525	105	RHOD_Kc Member of the Rhodanese Homology Domain su	99.84
cd01530	121	Cdc25 Cdc25 phosphatases are members of the Rhodan	99.83
smart00450	100	RHOD Rhodanese Homology Domain. An alpha beta fold	99.83
PF00581	113	Rhodanese: Rhodanese-like domain This Prosite entr	99.83
cd01445	138	TST_Repeats Thiosulfate sulfurtransferases (TST) c	99.83
cd01529	96	4RHOD_Repeats Member of the Rhodanese Homology Dom	99.82
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	99.82
PRK11493	281	sseA 3-mercaptopyruvate sulfurtransferase; Provisi	99.82
PRK09629	610	bifunctional thiosulfate sulfurtransferase/phospha	99.8
cd01532	92	4RHOD_Repeat_1 Member of the Rhodanese Homology Do	99.8
TIGR02981	101	phageshock_pspE phage shock operon rhodanese PspE.	99.8
PRK10287	104	thiosulfate:cyanide sulfurtransferase; Provisional	99.8
PLN02723	320	3-mercaptopyruvate sulfurtransferase	99.79
cd00158	89	RHOD Rhodanese Homology Domain (RHOD); an alpha be	99.79
PRK01415	247	hypothetical protein; Validated	99.78
COG0607	110	PspE Rhodanese-related sulfurtransferase [Inorgani	99.78
PRK05320	257	rhodanese superfamily protein; Provisional	99.77
PRK07411	390	hypothetical protein; Validated	99.75
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	99.75
cd01531	113	Acr2p Eukaryotic arsenate resistance proteins are	99.75
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	99.74
cd01443	113	Cdc25_Acr2p Cdc25 enzymes are members of the Rhoda	99.72
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	99.71
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.71
COG2897	285	SseA Rhodanese-related sulfurtransferase [Inorgani	99.7
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	99.69
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	99.69
cd01446	132	DSP_MapKP N-terminal regulatory rhodanese domain o	99.64
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	99.6
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	99.48
COG1054	308	Predicted sulfurtransferase [General function pred	99.35
KOG2017	427	consensus Molybdopterin synthase sulfurylase [Coen	99.2
KOG1529	286	consensus Mercaptopyruvate sulfurtransferase/thios	99.12
KOG3772	325	consensus M-phase inducer phosphatase [Cell cycle	99.09
COG5105	427	MIH1 Mitotic inducer, protein phosphatase [Cell di	98.18
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	97.24
COG2603	334	Predicted ATPase [General function prediction only	97.22
TIGR01244	135	conserved hypothetical protein TIGR01244. No membe	97.02
PRK00142	314	putative rhodanese-related sulfurtransferase; Prov	96.45
PF13350	164	Y_phosphatase3: Tyrosine phosphatase family; PDB:	95.55
KOG1093	725	consensus Predicted protein kinase (contains TBC a	94.98
PLN02727	986	NAD kinase	91.34
COG3453	130	Uncharacterized protein conserved in bacteria [Fun	91.28
KOG3636	669	consensus Uncharacterized conserved protein, conta	90.89
cd00127	139	DSPc Dual specificity phosphatases (DSP); Ser/Thr	90.12
TIGR03167	311	tRNA_sel_U_synt tRNA 2-selenouridine synthase. The	89.8
smart00195	138	DSPc Dual specificity phosphatase, catalytic domai	88.84
KOG1717	343	consensus Dual specificity phosphatase [Defense me	87.18

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1e-27  Score=194.56  Aligned_cols=166  Identities=22%  Similarity=0.315  Sum_probs=139.8

Q ss_pred             CCccCCCchhh-hhcccccccCCceeEEeecCCCcc-----------cccccccccccc---cccCCCcc----------
Q 029759           20 PPVLCPHGNNR-RGLLSLTVDQQRCDNIGFISSKIL-----------SFCPKASLRGNL---EAVGVPTS----------   74 (188)
Q Consensus        20 ~~~~~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~~~~~~~~~---~~~~~~~~----------   74 (188)
                      +|.+-|+.+.| +.+..+|++.+.+||+|+..+..+           |+.++..++|++   .+.+++.+          
T Consensus        68 ~~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~~~~~~~  147 (285)
T COG2897          68 LPHMLPSPEQFAKLLGELGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPPEPPPTT  147 (285)
T ss_pred             CCCCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCCCCCCcc
Confidence            68899999999 999999999999999999877665           889999999888   23333321          


Q ss_pred             ----------cCHHHHHHHHhCC-CEEEecCChhhHhc----------CCCCCeEEcCcccccC-CCCCCCHHHHHHHHh
Q 029759           75 ----------VPVRVAHELLQAG-HRYLDVRTPEEFSA----------GHATGAINVPYMYRVG-SGMTKNLKFVEEVST  132 (188)
Q Consensus        75 ----------i~~~~~~~~l~~~-~~iIDvR~~~ef~~----------ghIpgAinip~~~~~~-~~~~~~~~~l~~~~~  132 (188)
                                ++..++...++.. .+|||+|+++||..          ||||||+|+|+...++ .+.+++++.++....
T Consensus       148 f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~  227 (285)
T COG2897         148 FSAKYNVKAVVDATLVADALEVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYA  227 (285)
T ss_pred             ccccCCccccCCHHHHHHHhcCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHH
Confidence                      4556666666654 78999999999997          9999999999987776 466677777777764


Q ss_pred             c--cCCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhhC-CCcccccc
Q 029759          133 R--FRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLS-NQLLTEEK  185 (188)
Q Consensus       133 ~--l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~-g~p~~~~~  185 (188)
                      .  +++++++|+||++|.+|+..+..|+.+|+.+. +|+|+|.+|... +.|++++.
T Consensus       228 ~~gi~~~~~vI~yCgsG~~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~  284 (285)
T COG2897         228 DAGIDPDKEVIVYCGSGVRASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE  284 (285)
T ss_pred             hcCCCCCCCEEEEcCCchHHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence            4  88999999999999999999999999999877 999999999998 77998865

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.93  E-value=2e-25  Score=185.68  Aligned_cols=166  Identities=15%  Similarity=0.170  Sum_probs=134.8

Q ss_pred             CCccCCCchhh-hhcccccccCCceeEEeecCCCcc-----------cccccccccccc---cccCCC------------
Q 029759           20 PPVLCPHGNNR-RGLLSLTVDQQRCDNIGFISSKIL-----------SFCPKASLRGNL---EAVGVP------------   72 (188)
Q Consensus        20 ~~~~~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~~~~~~~~~---~~~~~~------------   72 (188)
                      .+.+.|+.+.| +++..+|+++++.+|+|+..+...           ||.++..++|++   ...+.+            
T Consensus        81 ~~~~lp~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~~  160 (320)
T PLN02723         81 LPHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAILK  160 (320)
T ss_pred             cCCCCCCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCCcccccc
Confidence            45667888999 999999999999999998654332           778888888776   111111            


Q ss_pred             -----------------------------cccCHHHHHHHHhC-CCEEEecCChhhH-----------hcCCCCCeEEcC
Q 029759           73 -----------------------------TSVPVRVAHELLQA-GHRYLDVRTPEEF-----------SAGHATGAINVP  111 (188)
Q Consensus        73 -----------------------------~~i~~~~~~~~l~~-~~~iIDvR~~~ef-----------~~ghIpgAinip  111 (188)
                                                   ..++.+++.+.+++ +.+|||+|+++||           ..||||||+|+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip  240 (320)
T PLN02723        161 ASAASEAIEKVYQGQTVSPITFQTKFQPHLVWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVP  240 (320)
T ss_pred             ccccccccccccccCCCCCCcccccCCccceecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccC
Confidence                                         01567788887765 4889999999998           469999999999


Q ss_pred             cccccC-CCCCCCHHHHHHHHhc--cCCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhhC-CCcccccc
Q 029759          112 YMYRVG-SGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLS-NQLLTEEK  185 (188)
Q Consensus       112 ~~~~~~-~~~~~~~~~l~~~~~~--l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~-g~p~~~~~  185 (188)
                      +...+. ++.+++.+.+++.+..  ++++++||+||++|.+|+.+++.|+.+||+++ +|+|||.+|... ++|+++..
T Consensus       241 ~~~~~~~~~~~~~~~el~~~~~~~gi~~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~~  319 (320)
T PLN02723        241 FPQMLDSSQTLLPAEELKKRFEQEGISLDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATST  319 (320)
T ss_pred             HHHhcCCCCCCCCHHHHHHHHHhcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCCC
Confidence            976544 5788999999998875  67889999999999999999999999999998 899999999987 78988753

>PLN02160 thiosulfate sulfurtransferase

Probab=99.93  E-value=7.6e-25  Score=161.17  Aligned_cols=113  Identities=43%  Similarity=0.683  Sum_probs=97.1

Q ss_pred             ccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCe--EEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHH
Q 029759           74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGA--INVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  151 (188)
Q Consensus        74 ~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgA--inip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~  151 (188)
                      .++++++.++++++.+|||||++.||..||||||  +|+|+......+.+.+.+++......++++++||+||++|.||.
T Consensus        16 ~i~~~e~~~~~~~~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~~~~~~IivyC~sG~RS~   95 (136)
T PLN02160         16 SVDVSQAKTLLQSGHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLLNPADDILVGCQSGARSL   95 (136)
T ss_pred             EeCHHHHHHHHhCCCEEEECCCHHHHhcCCCCCcceecccchhcCcccccCCHHHHHHHHhccCCCCcEEEECCCcHHHH
Confidence            5889999999987788999999999999999999  89998544444555666666655444578899999999999999


Q ss_pred             HHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          152 MAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       152 ~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      .++..|...||+++ +|.|||.+|...|+|+++..+
T Consensus        96 ~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  131 (136)
T PLN02160         96 KATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEEE  131 (136)
T ss_pred             HHHHHHHHcCCCCeeecCCcHHHHhhCCCCcccccc
Confidence            99999999999988 799999999999999998654

>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1e-24  Score=155.10  Aligned_cols=113  Identities=41%  Similarity=0.626  Sum_probs=101.9

Q ss_pred             CCCcccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccC-CCCcEEEEcCCC
Q 029759           70 GVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHDEIIVGCQSG  147 (188)
Q Consensus        70 ~~~~~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~-~~~~ivv~C~sG  147 (188)
                      ..+.+++.++++++++.+ .++||||.++||..||+|.+||||+......+...+++|+.......+ .++.|||+|.+|
T Consensus        20 ~~~~sv~~~qvk~L~~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG   99 (136)
T KOG1530|consen   20 SNPQSVSVEQVKNLLQHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEIIFGCASG   99 (136)
T ss_pred             CCcEEEEHHHHHHHhcCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEEEEeccC
Confidence            445579999999999887 999999999999999999999999987777899999999998876654 567999999999


Q ss_pred             hHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCccc
Q 029759          148 KRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLT  182 (188)
Q Consensus       148 ~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~  182 (188)
                      .||..|...|..+||+|+ +|.|||.+|.+.+.|..
T Consensus       100 ~Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~  135 (136)
T KOG1530|consen  100 VRSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK  135 (136)
T ss_pred             cchhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence            999999999999999999 89999999999987753

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.92  E-value=3.2e-24  Score=175.57  Aligned_cols=164  Identities=18%  Similarity=0.200  Sum_probs=128.4

Q ss_pred             CccCCCchhh-hhcccccccCCceeEEeecCCCcc-----------cccccccccccc---cccCCCc------------
Q 029759           21 PVLCPHGNNR-RGLLSLTVDQQRCDNIGFISSKIL-----------SFCPKASLRGNL---EAVGVPT------------   73 (188)
Q Consensus        21 ~~~~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~~~~~~~~~---~~~~~~~------------   73 (188)
                      +.+-|+.+.| +.+..+|++.++.+|+|+......           ++.++..++|++   ...+.+.            
T Consensus        66 ~~~~~~~~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~  145 (281)
T PRK11493         66 PHMMPRPETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAVELPEGEF  145 (281)
T ss_pred             CCCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCCCCCCCcc
Confidence            3556677888 888899999999999998754322           666666666655   1111110            


Q ss_pred             --------ccCHHHHHHHHhC-CCEEEecCChhhHh-----------cCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc
Q 029759           74 --------SVPVRVAHELLQA-GHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR  133 (188)
Q Consensus        74 --------~i~~~~~~~~l~~-~~~iIDvR~~~ef~-----------~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~  133 (188)
                              ..+.+++...++. +.+|||+|+++||.           .||||||+|+|+.+...++.+.+++.++..+..
T Consensus       146 ~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~~~~~~~~~l~~~~~~  225 (281)
T PRK11493        146 NAAFNPEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFG  225 (281)
T ss_pred             cccCCccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCCCCcCCHHHHHHHHHh
Confidence                    1344455555544 48999999999995           699999999998776667778888899888765


Q ss_pred             --cCCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhh-CCCccccc
Q 029759          134 --FRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFL-SNQLLTEE  184 (188)
Q Consensus       134 --l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~-~g~p~~~~  184 (188)
                        ++++++||+||++|.+|+.+++.|+.+||+++ +|+|||.+|.. .++|+++.
T Consensus       226 ~g~~~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~  280 (281)
T PRK11493        226 RGVSFDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA  280 (281)
T ss_pred             cCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence              57889999999999999999999999999988 89999999998 58999865

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.91  E-value=1.4e-23  Score=187.05  Aligned_cols=164  Identities=18%  Similarity=0.167  Sum_probs=133.2

Q ss_pred             ccCCCchhh-hhcccccccCCceeEEeecCCCc-----------ccccccccccccc---cccCCC--------------
Q 029759           22 VLCPHGNNR-RGLLSLTVDQQRCDNIGFISSKI-----------LSFCPKASLRGNL---EAVGVP--------------   72 (188)
Q Consensus        22 ~~~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~~~~~~~~~---~~~~~~--------------   72 (188)
                      ..-|+.+.| +.+..+|++.++.+|+|+.....           +|+.++..++|++   ...+.+              
T Consensus        61 ~~lp~~~~l~~~l~~lGI~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~~~~~~~~  140 (610)
T PRK09629         61 GLLPDTADLEQLFGELGHNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPPVAGGPVT  140 (610)
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCCCCCccee
Confidence            344777889 88899999999999999876532           2778888888876   111111              


Q ss_pred             ------cccCHHHHHHHHhC-CCEEEecCChhhHh--------cCCCCCeEEcCcccccC-CCCCCCHHHHHHHHhc--c
Q 029759           73 ------TSVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--F  134 (188)
Q Consensus        73 ------~~i~~~~~~~~l~~-~~~iIDvR~~~ef~--------~ghIpgAinip~~~~~~-~~~~~~~~~l~~~~~~--l  134 (188)
                            ..++.+++.+.+++ +.+|||+|+++||.        .||||||+|+|+...+. ++.+++++.+++.+..  +
T Consensus       141 ~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~~~~~lk~~~el~~~~~~~Gi  220 (610)
T PRK09629        141 LTLHDEPTATREYLQSRLGAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMDKARNLRIRQDMPEILRDLGI  220 (610)
T ss_pred             eccCCcccccHHHHHHhhCCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcCCCCCCCCHHHHHHHHHHcCC
Confidence                  12577888888865 47899999999995        69999999999865443 5678888899988876  5


Q ss_pred             CCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhhC-CCcccccc
Q 029759          135 RKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLS-NQLLTEEK  185 (188)
Q Consensus       135 ~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~-g~p~~~~~  185 (188)
                      +++++||+||++|.+|+.+++.|+.+||+++ +|+|||.+|... ++|+++..
T Consensus       221 ~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~~  273 (610)
T PRK09629        221 TPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPT  273 (610)
T ss_pred             CCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccCC
Confidence            7889999999999999999999999999998 899999999987 78988754

>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2

Probab=99.90  E-value=3.9e-23  Score=146.31  Aligned_cols=95  Identities=22%  Similarity=0.291  Sum_probs=81.6

Q ss_pred             CcccCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc--CCCCcEEEEcCCC
Q 029759           72 PTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSG  147 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~~--~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l--~~~~~ivv~C~sG  147 (188)
                      ...++++++.++++++  .+|||+|++.||..||||||+|+|+.            .+...+..+  +++++||+||++|
T Consensus         9 ~~~i~~~~l~~~~~~~~~~~liDvR~~~e~~~ghIpgainip~~------------~l~~~~~~l~~~~~~~ivv~C~~G   76 (109)
T cd01533           9 TPSVSADELAALQARGAPLVVLDGRRFDEYRKMTIPGSVSCPGA------------ELVLRVGELAPDPRTPIVVNCAGR   76 (109)
T ss_pred             CCcCCHHHHHHHHhcCCCcEEEeCCCHHHHhcCcCCCceeCCHH------------HHHHHHHhcCCCCCCeEEEECCCC
Confidence            3468999999998754  68999999999999999999999984            444444444  4578999999999


Q ss_pred             hHHHHHHHHHHHCCCCc-e-EecCcHHhhhhCC
Q 029759          148 KRSMMAATDLLNAVSTH-A-NYPSKPLTWFLSN  178 (188)
Q Consensus       148 ~~a~~a~~~L~~~G~~~-v-~l~GG~~~W~~~g  178 (188)
                      .+|..+++.|+..||++ + ++.||+.+|..+|
T Consensus        77 ~rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g  109 (109)
T cd01533          77 TRSIIGAQSLINAGLPNPVAALRNGTQGWTLAG  109 (109)
T ss_pred             chHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence            99999999999999987 6 7999999998764

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.

>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily

Probab=99.90  E-value=3.5e-23  Score=143.91  Aligned_cols=96  Identities=25%  Similarity=0.333  Sum_probs=83.9

Q ss_pred             ccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHH
Q 029759           74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMA  153 (188)
Q Consensus        74 ~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a  153 (188)
                      .++++++.++++++.+|||+|++++|..||||||+|+|+.            .+......++++++||+||++|.+|..+
T Consensus         3 ~i~~~el~~~~~~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~iv~~c~~g~~s~~~   70 (99)
T cd01527           3 TISPNDACELLAQGAVLVDIREPDEYLRERIPGARLVPLS------------QLESEGLPLVGANAIIFHCRSGMRTQQN   70 (99)
T ss_pred             ccCHHHHHHHHHCCCEEEECCCHHHHHhCcCCCCEECChh------------HhcccccCCCCCCcEEEEeCCCchHHHH
Confidence            5789999999888899999999999999999999999984            2322222367889999999999999999


Q ss_pred             HHHHHHCCCCce-EecCcHHhhhhCCCcc
Q 029759          154 ATDLLNAVSTHA-NYPSKPLTWFLSNQLL  181 (188)
Q Consensus       154 ~~~L~~~G~~~v-~l~GG~~~W~~~g~p~  181 (188)
                      +..|.++||+++ ++.||+.+|...++|+
T Consensus        71 ~~~L~~~g~~~v~~l~gG~~~W~~~~~~~   99 (99)
T cd01527          71 AERLAAISAGEAYVLEGGLDAWKAAGLPV   99 (99)
T ss_pred             HHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence            999999999988 6999999999988874

This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.

>PRK00162 glpE thiosulfate sulfurtransferase; Validated

Probab=99.89  E-value=7.9e-23  Score=144.49  Aligned_cols=101  Identities=24%  Similarity=0.282  Sum_probs=89.3

Q ss_pred             CcccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHH
Q 029759           72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~-~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a  150 (188)
                      ...++++++.+++++ +.+|||+|++++|..||||||+|+|+.            .+......+++++++++||.+|.+|
T Consensus         4 ~~~is~~el~~~l~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~------------~l~~~~~~~~~~~~ivv~c~~g~~s   71 (108)
T PRK00162          4 FECINVEQAHQKLQEGGAVLVDIRDPQSFAMGHAPGAFHLTND------------SLGAFMRQADFDTPVMVMCYHGNSS   71 (108)
T ss_pred             ccccCHHHHHHHHHcCCCEEEEcCCHHHHhcCCCCCCeECCHH------------HHHHHHHhcCCCCCEEEEeCCCCCH
Confidence            346899999999865 489999999999999999999999983            5555556678899999999999999


Q ss_pred             HHHHHHHHHCCCCce-EecCcHHhhhhCCCccccc
Q 029759          151 MMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEE  184 (188)
Q Consensus       151 ~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~  184 (188)
                      ..++..|+..||+++ ++.||+.+|...++|++..
T Consensus        72 ~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~  106 (108)
T PRK00162         72 QGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS  106 (108)
T ss_pred             HHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence            999999999999988 7999999999999998764

>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=7.5e-23  Score=142.89  Aligned_cols=97  Identities=22%  Similarity=0.212  Sum_probs=77.8

Q ss_pred             ccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHH
Q 029759           74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  152 (188)
Q Consensus        74 ~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~  152 (188)
                      .++++++.++++++ .+|||||+++||..||||||+|+|+.+...     ..+.+.... .++++++||+||.+|.+|..
T Consensus         3 ~is~~~l~~~~~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~-----~~~~~~~~~-~~~~~~~ivvyC~~G~rs~~   76 (101)
T cd01518           3 YLSPAEWNELLEDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFRE-----FPFWLDENL-DLLKGKKVLMYCTGGIRCEK   76 (101)
T ss_pred             cCCHHHHHHHHcCCCEEEEEcCChhhhhcCEeccccCCCcccHhH-----hHHHHHhhh-hhcCCCEEEEECCCchhHHH
Confidence            47899999988754 899999999999999999999999852100     011122111 23688999999999999999


Q ss_pred             HHHHHHHCCCCce-EecCcHHhhhh
Q 029759          153 AATDLLNAVSTHA-NYPSKPLTWFL  176 (188)
Q Consensus       153 a~~~L~~~G~~~v-~l~GG~~~W~~  176 (188)
                      ++..|..+||+++ ++.||+.+|.+
T Consensus        77 a~~~L~~~G~~~v~~l~GG~~~W~~  101 (101)
T cd01518          77 ASAYLKERGFKNVYQLKGGILKYLE  101 (101)
T ss_pred             HHHHHHHhCCcceeeechhHHHHhC
Confidence            9999999999988 79999999963

This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.

>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily

Probab=99.88  E-value=3.5e-22  Score=139.18  Aligned_cols=96  Identities=21%  Similarity=0.225  Sum_probs=77.9

Q ss_pred             cCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHH
Q 029759           75 VPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  152 (188)
Q Consensus        75 i~~~~~~~~l~~~--~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~  152 (188)
                      ++++++.++++++  .+|||||+++||..||||||+|+|+......    ..+........++++++||+||.+|.+|..
T Consensus         1 is~~el~~~l~~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~----~~~~~~~~~~~~~~~~~ivv~C~~G~rs~~   76 (100)
T cd01523           1 LDPEDLYARLLAGQPLFILDVRNESDYERWKIDGENNTPYFDPYFD----FLEIEEDILDQLPDDQEVTVICAKEGSSQF   76 (100)
T ss_pred             CCHHHHHHHHHcCCCcEEEEeCCHHHHhhcccCCCcccccccchHH----HHHhhHHHHhhCCCCCeEEEEcCCCCcHHH
Confidence            5788999988764  7999999999999999999999998521100    000113345557889999999999999999


Q ss_pred             HHHHHHHCCCCce-EecCcHHhhh
Q 029759          153 AATDLLNAVSTHA-NYPSKPLTWF  175 (188)
Q Consensus       153 a~~~L~~~G~~~v-~l~GG~~~W~  175 (188)
                      ++..|+..||+ + ++.||+.+|.
T Consensus        77 aa~~L~~~G~~-~~~l~GG~~~W~   99 (100)
T cd01523          77 VAELLAERGYD-VDYLAGGMKAWS   99 (100)
T ss_pred             HHHHHHHcCce-eEEeCCcHHhhc
Confidence            99999999999 6 7999999995

This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.

>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily

Probab=99.87  E-value=8.8e-22  Score=134.72  Aligned_cols=88  Identities=33%  Similarity=0.422  Sum_probs=78.2

Q ss_pred             cCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHHH
Q 029759           75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAA  154 (188)
Q Consensus        75 i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a~  154 (188)
                      ++++++.+++.++.++||+|++++|..||||||+|+|+.            .+......++++++||+||.+|.++..++
T Consensus         1 ~~~~e~~~~~~~~~~iiD~R~~~~~~~~hipgA~~ip~~------------~~~~~~~~~~~~~~vvl~c~~g~~a~~~a   68 (90)
T cd01524           1 VQWHELDNYRADGVTLIDVRTPQEFEKGHIKGAINIPLD------------ELRDRLNELPKDKEIIVYCAVGLRGYIAA   68 (90)
T ss_pred             CCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCCEeCCHH------------HHHHHHHhcCCCCcEEEEcCCChhHHHHH
Confidence            468899999877789999999999999999999999983            45555555788899999999999999999


Q ss_pred             HHHHHCCCCce-EecCcHHhhh
Q 029759          155 TDLLNAVSTHA-NYPSKPLTWF  175 (188)
Q Consensus       155 ~~L~~~G~~~v-~l~GG~~~W~  175 (188)
                      ..|+..|| ++ +|.||+.+|.
T Consensus        69 ~~L~~~G~-~v~~l~GG~~~w~   89 (90)
T cd01524          69 RILTQNGF-KVKNLDGGYKTYS   89 (90)
T ss_pred             HHHHHCCC-CEEEecCCHHHhc
Confidence            99999999 77 7999999995

Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.

>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3

Probab=99.87  E-value=1.2e-21  Score=135.40  Aligned_cols=88  Identities=22%  Similarity=0.208  Sum_probs=73.5

Q ss_pred             cCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc-c-CCCCcEEEEcCCChH
Q 029759           75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-F-RKHDEIIVGCQSGKR  149 (188)
Q Consensus        75 i~~~~~~~~l~~~---~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~-l-~~~~~ivv~C~sG~~  149 (188)
                      |+++++.+++.++   +++||+|+++||..||||||+|+|+.            .+...... . .++++||+||.+|.+
T Consensus         1 is~~~l~~~~~~~~~~~~liDvR~~~e~~~ghipga~~ip~~------------~l~~~~~~~~~~~~~~iv~~c~~G~r   68 (95)
T cd01534           1 IGAAELARWAAEGDRTVYRFDVRTPEEYEAGHLPGFRHTPGG------------QLVQETDHFAPVRGARIVLADDDGVR   68 (95)
T ss_pred             CCHHHHHHHHHcCCCCeEEEECCCHHHHHhCCCCCcEeCCHH------------HHHHHHHHhcccCCCeEEEECCCCCh
Confidence            5788999988653   67999999999999999999999984            23222222 2 246899999999999


Q ss_pred             HHHHHHHHHHCCCCce-EecCcHHhhh
Q 029759          150 SMMAATDLLNAVSTHA-NYPSKPLTWF  175 (188)
Q Consensus       150 a~~a~~~L~~~G~~~v-~l~GG~~~W~  175 (188)
                      |..++..|+.+||+ + ++.||+.+|.
T Consensus        69 s~~aa~~L~~~G~~-v~~l~GG~~~W~   94 (95)
T cd01534          69 ADMTASWLAQMGWE-VYVLEGGLAAAL   94 (95)
T ss_pred             HHHHHHHHHHcCCE-EEEecCcHHHhc
Confidence            99999999999999 7 7999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.

>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily

Probab=99.87  E-value=7.9e-22  Score=138.48  Aligned_cols=99  Identities=28%  Similarity=0.371  Sum_probs=80.3

Q ss_pred             CHHHHHHHHh-C-CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc--cCCCCcEEEEcCCChHHH
Q 029759           76 PVRVAHELLQ-A-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSM  151 (188)
Q Consensus        76 ~~~~~~~~l~-~-~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~--l~~~~~ivv~C~sG~~a~  151 (188)
                      +++++.++++ . +.+|||+|++.+|..||||||+|+|+.+. .+....+++.+...+..  ++++++||+||++|.+|.
T Consensus         2 ~~~~~~~~l~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ivv~c~~g~~s~   80 (106)
T cd01519           2 SFEEVKNLPNPHPNKVLIDVREPEELKTGKIPGAINIPLSSL-PDALALSEEEFEKKYGFPKPSKDKELIFYCKAGVRSK   80 (106)
T ss_pred             cHHHHHHhcCCCCCEEEEECCCHHHHhcCcCCCcEEechHHh-hhhhCCCHHHHHHHhcccCCCCCCeEEEECCCcHHHH
Confidence            5778888886 4 49999999999999999999999998642 22223344455555543  356899999999999999


Q ss_pred             HHHHHHHHCCCCce-EecCcHHhhh
Q 029759          152 MAATDLLNAVSTHA-NYPSKPLTWF  175 (188)
Q Consensus       152 ~a~~~L~~~G~~~v-~l~GG~~~W~  175 (188)
                      .+++.|..+||+++ .|.||+.+|.
T Consensus        81 ~~~~~l~~~G~~~v~~~~Gg~~~W~  105 (106)
T cd01519          81 AAAELARSLGYENVGNYPGSWLDWA  105 (106)
T ss_pred             HHHHHHHHcCCccceecCCcHHHHc
Confidence            99999999999988 7999999995

This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.

>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily

Probab=99.87  E-value=1.8e-21  Score=138.11  Aligned_cols=98  Identities=20%  Similarity=0.249  Sum_probs=83.9

Q ss_pred             CCcccCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHH-HHHhccCCCCcEEEEcCC
Q 029759           71 VPTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFRKHDEIIVGCQS  146 (188)
Q Consensus        71 ~~~~i~~~~~~~~l~~~---~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~-~~~~~l~~~~~ivv~C~s  146 (188)
                      ....++++++.+++..+   .+|||+|++.+|..||||||+|+|+.            .+. +....++++++||+||++
T Consensus         6 ~~~~~s~~el~~~l~~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~~i~~~~~vvvyc~~   73 (110)
T cd01521           6 LAFETDCWDVAIALKNGKPDFVLVDVRSAEAYARGHVPGAINLPHR------------EICENATAKLDKEKLFVVYCDG   73 (110)
T ss_pred             eeeecCHHHHHHHHHcCCCCEEEEECCCHHHHhcCCCCCCEeCCHH------------HhhhHhhhcCCCCCeEEEEECC
Confidence            34468999999998753   79999999999999999999999984            333 344557889999999998


Q ss_pred             C--hHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcc
Q 029759          147 G--KRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLL  181 (188)
Q Consensus       147 G--~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~  181 (188)
                      |  .+|..+++.|+.+||+ + +|.||+.+|..+|+|+
T Consensus        74 g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~  110 (110)
T cd01521          74 PGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT  110 (110)
T ss_pred             CCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence            7  4899999999999997 6 7999999999998874

This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.

>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2

Probab=99.87  E-value=1.9e-21  Score=135.80  Aligned_cols=91  Identities=29%  Similarity=0.395  Sum_probs=77.4

Q ss_pred             cCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc---CCCCcEEEEcCCCh
Q 029759           75 VPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF---RKHDEIIVGCQSGK  148 (188)
Q Consensus        75 i~~~~~~~~l~~~---~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l---~~~~~ivv~C~sG~  148 (188)
                      ++++++.++++.+   .+|||+|+++||..+|||||+|+|+.            .+......+   ++++++|+||++|.
T Consensus         2 i~~~~l~~~~~~~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~------------~~~~~~~~~~~~~~~~~vv~~c~~g~   69 (101)
T cd01528           2 ISVAELAEWLADEREEPVLIDVREPEELEIAFLPGFLHLPMS------------EIPERSKELDSDNPDKDIVVLCHHGG   69 (101)
T ss_pred             CCHHHHHHHHhcCCCCCEEEECCCHHHHhcCcCCCCEecCHH------------HHHHHHHHhcccCCCCeEEEEeCCCc
Confidence            6788999988754   79999999999999999999999984            333333333   35899999999999


Q ss_pred             HHHHHHHHHHHCCCCce-EecCcHHhhhhC
Q 029759          149 RSMMAATDLLNAVSTHA-NYPSKPLTWFLS  177 (188)
Q Consensus       149 ~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~  177 (188)
                      +|..++..|...||+++ +|+||+.+|...
T Consensus        70 rs~~~~~~l~~~G~~~v~~l~GG~~~w~~~   99 (101)
T cd01528          70 RSMQVAQWLLRQGFENVYNLQGGIDAWSLE   99 (101)
T ss_pred             hHHHHHHHHHHcCCccEEEecCCHHHHhhh
Confidence            99999999999999988 799999999753

Subgroup 2 includes uncharacterized putative rhodanese-related domains.

>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=2.2e-21  Score=141.31  Aligned_cols=101  Identities=24%  Similarity=0.307  Sum_probs=78.3

Q ss_pred             cCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCC----CC------------------CCHHHHHHHH-
Q 029759           75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSG----MT------------------KNLKFVEEVS-  131 (188)
Q Consensus        75 i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~----~~------------------~~~~~l~~~~-  131 (188)
                      |+++++.++++++.+|||||+++||..||||||+|+|+.......    .+                  ..++++.... 
T Consensus         1 ~s~~el~~~l~~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (128)
T cd01520           1 ITAEDLLALRKADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRILNEAWE   80 (128)
T ss_pred             CCHHHHHHHHhcCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            578999999987789999999999999999999999985322100    00                  0011222221 


Q ss_pred             hccCCCCcEEEEcC-CChHHHHHHHHHHHCCCCce-EecCcHHhhhh
Q 029759          132 TRFRKHDEIIVGCQ-SGKRSMMAATDLLNAVSTHA-NYPSKPLTWFL  176 (188)
Q Consensus       132 ~~l~~~~~ivv~C~-sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~  176 (188)
                      ..++++++||+||+ +|.+|..+++.|+.+||+ + .++||+.+|..
T Consensus        81 ~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~-v~~L~GG~~aw~~  126 (128)
T cd01520          81 ARLERDPKLLIYCARGGMRSQSLAWLLESLGID-VPLLEGGYKAYRK  126 (128)
T ss_pred             hccCCCCeEEEEeCCCCccHHHHHHHHHHcCCc-eeEeCCcHHHHHh
Confidence            25788999999997 689999999999999995 6 79999999964

This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.

>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=3.3e-21  Score=132.87  Aligned_cols=89  Identities=27%  Similarity=0.360  Sum_probs=79.5

Q ss_pred             cCHHHHHHHHhC--CCEEEecCChhhHhc--CCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHH
Q 029759           75 VPVRVAHELLQA--GHRYLDVRTPEEFSA--GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (188)
Q Consensus        75 i~~~~~~~~l~~--~~~iIDvR~~~ef~~--ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a  150 (188)
                      ++++++.+++++  +.+|||+|++.+|..  ||||||+|+|+.            .+......++++++||+||.+|.+|
T Consensus         2 i~~~~~~~~~~~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~ivv~c~~g~~s   69 (96)
T cd01444           2 ISVDELAELLAAGEAPVLLDVRDPASYAALPDHIPGAIHLDED------------SLDDWLGDLDRDRPVVVYCYHGNSS   69 (96)
T ss_pred             cCHHHHHHHHhcCCCcEEEECCCHHHHhcccCCCCCCeeCCHH------------HHHHHHhhcCCCCCEEEEeCCCChH
Confidence            678899998876  389999999999999  999999999983            4555556678899999999999999


Q ss_pred             HHHHHHHHHCCCCce-EecCcHHhhh
Q 029759          151 MMAATDLLNAVSTHA-NYPSKPLTWF  175 (188)
Q Consensus       151 ~~a~~~L~~~G~~~v-~l~GG~~~W~  175 (188)
                      ..+++.|+..||+++ ++.||+.+|.
T Consensus        70 ~~a~~~l~~~G~~~v~~l~gG~~~w~   95 (96)
T cd01444          70 AQLAQALREAGFTDVRSLAGGFEAWR   95 (96)
T ss_pred             HHHHHHHHHcCCceEEEcCCCHHHhc
Confidence            999999999999998 7999999995

Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.

>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain

Probab=99.86  E-value=2.3e-21  Score=138.67  Aligned_cols=101  Identities=24%  Similarity=0.356  Sum_probs=86.0

Q ss_pred             cCHHHHHHHHhCC-CEEEecCChhhHhc-----------CCCCCeEEcCcccccC-CCCCCCHHHHHHHHhc--cCCCCc
Q 029759           75 VPVRVAHELLQAG-HRYLDVRTPEEFSA-----------GHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDE  139 (188)
Q Consensus        75 i~~~~~~~~l~~~-~~iIDvR~~~ef~~-----------ghIpgAinip~~~~~~-~~~~~~~~~l~~~~~~--l~~~~~  139 (188)
                      ++++++.++++++ .+|||+|+..+|..           ||||||+|+|+..... .+.+.+++.+...+..  ++++++
T Consensus         1 ~s~~~l~~~l~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (118)
T cd01449           1 VTAEEVLANLDSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDEDGTFKSPEELRALFAALGITPDKP   80 (118)
T ss_pred             CCHHHHHHhcCCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCCCC
Confidence            4688888888654 89999999999987           9999999999865443 3456677778777765  467899


Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhh
Q 029759          140 IIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWF  175 (188)
Q Consensus       140 ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~  175 (188)
                      ||+||++|.+|..+++.|+.+||+++ .|+||+.+|.
T Consensus        81 iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~~~W~  117 (118)
T cd01449          81 VIVYCGSGVTACVLLLALELLGYKNVRLYDGSWSEWG  117 (118)
T ss_pred             EEEECCcHHHHHHHHHHHHHcCCCCeeeeCChHHHhc
Confidence            99999999999999999999999988 7999999996

TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.

>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain

Probab=99.86  E-value=3.8e-21  Score=138.49  Aligned_cols=104  Identities=19%  Similarity=0.128  Sum_probs=88.6

Q ss_pred             cCHHHHHHHHhC-CCEEEecCCh-------hhHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHHhc--cCCCCc
Q 029759           75 VPVRVAHELLQA-GHRYLDVRTP-------EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDE  139 (188)
Q Consensus        75 i~~~~~~~~l~~-~~~iIDvR~~-------~ef~~ghIpgAinip~~~~~~-----~~~~~~~~~l~~~~~~--l~~~~~  139 (188)
                      ++++++.+++.+ +.+|||+|++       ++|..||||||+|+|+.+...     .+.+.+.+.+.+.+..  ++++++
T Consensus         2 i~~~~l~~~l~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (122)
T cd01448           2 VSPDWLAEHLDDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISNDDT   81 (122)
T ss_pred             cCHHHHHHHhCCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCCCCE
Confidence            678999999876 5899999999       999999999999999865432     3567777777777654  578899


Q ss_pred             EEEEcCC-ChHHHHHHHHHHHCCCCce-EecCcHHhhhhCC
Q 029759          140 IIVGCQS-GKRSMMAATDLLNAVSTHA-NYPSKPLTWFLSN  178 (188)
Q Consensus       140 ivv~C~s-G~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g  178 (188)
                      ||+||++ |.+|..+++.|+.+||+++ +|.|||.+|..+|
T Consensus        82 vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g  122 (122)
T cd01448          82 VVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG  122 (122)
T ss_pred             EEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence            9999999 5999999999999999998 7999999998754

TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.

>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein

Probab=99.86  E-value=9e-21  Score=143.38  Aligned_cols=106  Identities=20%  Similarity=0.222  Sum_probs=82.3

Q ss_pred             cccCHHHHHHHHhCC-CEEEecCChh----hHhcC---------CCCCeEEcCcccccCCCCCCC--HHHHHHHHhc---
Q 029759           73 TSVPVRVAHELLQAG-HRYLDVRTPE----EFSAG---------HATGAINVPYMYRVGSGMTKN--LKFVEEVSTR---  133 (188)
Q Consensus        73 ~~i~~~~~~~~l~~~-~~iIDvR~~~----ef~~g---------hIpgAinip~~~~~~~~~~~~--~~~l~~~~~~---  133 (188)
                      ..++++++.++++++ .+|||+|+++    +|..|         |||||+|+|+..   .+.+..  .+.+...+..   
T Consensus        36 ~~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~---~~~l~~~~~~~~~~~l~~~~~  112 (162)
T TIGR03865        36 RVLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTG---YGNLAPAWQAYFRRGLERATG  112 (162)
T ss_pred             cccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccC---CCCCCCchhHHHHHHHHHhcC
Confidence            469999999999765 8999999876    46544         999999999631   111121  1223343432   


Q ss_pred             cCCCCcEEEEcCCCh-HHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcc
Q 029759          134 FRKHDEIIVGCQSGK-RSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLL  181 (188)
Q Consensus       134 l~~~~~ivv~C~sG~-~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~  181 (188)
                      .+++++||+||++|. +|..+++.|+.+||++| +|+||+.+|..+|+|+
T Consensus       113 ~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv  162 (162)
T TIGR03865       113 GDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL  162 (162)
T ss_pred             CCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence            268899999999986 89999999999999999 7999999999999985

Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.

>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily

Probab=99.86  E-value=3.4e-21  Score=139.12  Aligned_cols=103  Identities=23%  Similarity=0.246  Sum_probs=81.0

Q ss_pred             cccCHHHHHHHHhC--CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHH---HHhccCCCCcEEEEcCCC
Q 029759           73 TSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE---VSTRFRKHDEIIVGCQSG  147 (188)
Q Consensus        73 ~~i~~~~~~~~l~~--~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~---~~~~l~~~~~ivv~C~sG  147 (188)
                      ..++++++.+++++  +.+|||+|+++||..||||||+|+|+......     ...+..   ....++++++||+||++|
T Consensus         8 ~~is~~el~~~~~~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~~-----~~~~~~~~~~~~~~~~~~~ivv~C~~G   82 (122)
T cd01526           8 ERVSVKDYKNILQAGKKHVLLDVRPKVHFEICRLPEAINIPLSELLSK-----AAELKSLQELPLDNDKDSPIYVVCRRG   82 (122)
T ss_pred             cccCHHHHHHHHhCCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhhh-----hhhhhhhhhcccccCCCCcEEEECCCC
Confidence            36899999999875  37899999999999999999999998521110     000100   012246789999999999


Q ss_pred             hHHHHHHHHHHHCCC-Cce-EecCcHHhhhhCCCc
Q 029759          148 KRSMMAATDLLNAVS-THA-NYPSKPLTWFLSNQL  180 (188)
Q Consensus       148 ~~a~~a~~~L~~~G~-~~v-~l~GG~~~W~~~g~p  180 (188)
                      .+|..++..|+..|| +++ ++.||+.+|..+..+
T Consensus        83 ~rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~  117 (122)
T cd01526          83 NDSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP  117 (122)
T ss_pred             CcHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence            999999999999999 677 899999999887443

This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.

>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain

Probab=99.85  E-value=3.4e-21  Score=134.40  Aligned_cols=100  Identities=23%  Similarity=0.257  Sum_probs=76.1

Q ss_pred             cCHHHHHHHHhC-CCEEEecCChhhH-hcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHH
Q 029759           75 VPVRVAHELLQA-GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  152 (188)
Q Consensus        75 i~~~~~~~~l~~-~~~iIDvR~~~ef-~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~  152 (188)
                      ++++++.+++++ +.+|||+|++.+| ..||||||+|+|+.....  .......+  ....++++++||+||++|.+|..
T Consensus         1 is~~el~~~~~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~--~~~~~~~~--~~~~~~~~~~ivv~c~~g~~s~~   76 (103)
T cd01447           1 LSPEDARALLGSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEF--WADPDSPY--HKPAFAEDKPFVFYCASGWRSAL   76 (103)
T ss_pred             CCHHHHHHHHhCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhh--hcCccccc--cccCCCCCCeEEEEcCCCCcHHH
Confidence            578889888874 5899999999998 579999999999741100  00000000  01125788999999999999999


Q ss_pred             HHHHHHHCCCCce-EecCcHHhhhhCC
Q 029759          153 AATDLLNAVSTHA-NYPSKPLTWFLSN  178 (188)
Q Consensus       153 a~~~L~~~G~~~v-~l~GG~~~W~~~g  178 (188)
                      +++.|+.+||+++ +|+||+.+|...|
T Consensus        77 ~~~~l~~~G~~~v~~l~Gg~~~w~~~g  103 (103)
T cd01447          77 AGKTLQDMGLKPVYNIEGGFKDWKEAG  103 (103)
T ss_pred             HHHHHHHcChHHhEeecCcHHHHhhcC
Confidence            9999999999987 8999999997653

This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.

>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4

Probab=99.84  E-value=1.3e-20  Score=140.00  Aligned_cols=93  Identities=16%  Similarity=0.227  Sum_probs=82.1

Q ss_pred             HHHHHhCC--CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHHHHHH
Q 029759           80 AHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDL  157 (188)
Q Consensus        80 ~~~~l~~~--~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L  157 (188)
                      +.+++.++  .+|||+|++.+|..||||||+|+|.            ..+......++++++||+||.+|.+|..+++.|
T Consensus         2 l~~~l~~~~~~~ivDvR~~~e~~~gHIpgAi~~~~------------~~l~~~l~~l~~~~~vVv~c~~g~~a~~aa~~L   69 (145)
T cd01535           2 LAAWLGEGGQTAVVDVTASANYVKRHIPGAWWVLR------------AQLAQALEKLPAAERYVLTCGSSLLARFAAADL   69 (145)
T ss_pred             hHHHHhCCCCeEEEECCCHHHHHcCCCCCceeCCH------------HHHHHHHHhcCCCCCEEEEeCCChHHHHHHHHH
Confidence            34555544  7999999999999999999999997            467777777777899999999999999999999


Q ss_pred             HHCCCCce-EecCcHHhhhhCCCccccc
Q 029759          158 LNAVSTHA-NYPSKPLTWFLSNQLLTEE  184 (188)
Q Consensus       158 ~~~G~~~v-~l~GG~~~W~~~g~p~~~~  184 (188)
                      +..||+++ +|.||+.+|...|+|+++.
T Consensus        70 ~~~G~~~v~~L~GG~~aW~~~g~pl~~~   97 (145)
T cd01535          70 AALTVKPVFVLEGGTAAWIAAGLPVESG   97 (145)
T ss_pred             HHcCCcCeEEecCcHHHHHHCCCCcccC
Confidence            99999988 7999999999999999875

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.

>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1

Probab=99.84  E-value=1.2e-20  Score=135.45  Aligned_cols=101  Identities=27%  Similarity=0.291  Sum_probs=81.9

Q ss_pred             cCHHHHHHHHhC--CCEEEecCChhhHh-cCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHH
Q 029759           75 VPVRVAHELLQA--GHRYLDVRTPEEFS-AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  151 (188)
Q Consensus        75 i~~~~~~~~l~~--~~~iIDvR~~~ef~-~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~  151 (188)
                      ++++++.+++++  +.+|||+|++.||+ .||||||+|+|+.+....  ..+..+..+....++++++||+||.+|.+|.
T Consensus         1 is~~el~~~l~~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~--~~~~~~~~~l~~~~~~~~~ivv~C~~G~rs~   78 (117)
T cd01522           1 LTPAEAWALLQADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDM--EINPNFLAELEEKVGKDRPVLLLCRSGNRSI   78 (117)
T ss_pred             CCHHHHHHHHHhCCCeEEEECCCHHHHhcccCCCCceecchhhcccc--ccCHHHHHHHHhhCCCCCeEEEEcCCCccHH
Confidence            578999999876  48999999999999 999999999998533321  1123344444443468899999999999999


Q ss_pred             HHHHHHHHCCCCce-EecCcHHhhhhC
Q 029759          152 MAATDLLNAVSTHA-NYPSKPLTWFLS  177 (188)
Q Consensus       152 ~a~~~L~~~G~~~v-~l~GG~~~W~~~  177 (188)
                      .++..|...||+++ .+.||+.+|...
T Consensus        79 ~aa~~L~~~G~~~v~~l~gG~~~~~~~  105 (117)
T cd01522          79 AAAEAAAQAGFTNVYNVLEGFEGDLDA  105 (117)
T ss_pred             HHHHHHHHCCCCeEEECcCceecCCCC
Confidence            99999999999998 699999999765

This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.

>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily

Probab=99.84  E-value=1.1e-20  Score=132.52  Aligned_cols=99  Identities=21%  Similarity=0.228  Sum_probs=75.4

Q ss_pred             cCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCeEEcCcccccCC-CCCCCHHHHHHHHhccCCCCcEEEEcCCChHH
Q 029759           75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (188)
Q Consensus        75 i~~~~~~~~l~~---~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~-~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a  150 (188)
                      |+++++.+++++   +.+|||+|++.||..||||||+|+|+...... +....-.... .+.. ..+++||+||.+|.+|
T Consensus         1 is~~~l~~~l~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~-~~~~-~~~~~vv~~c~~g~~s   78 (105)
T cd01525           1 ISVYDVIRLLDNSPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVFLKEGELEQLPTVP-RLEN-YKGKIIVIVSHSHKHA   78 (105)
T ss_pred             CCHHHHHHHHhCCCCCeEEEECCCHHHHhCCccCCCEeCCHHHhcccccccccccchH-HHHh-hcCCeEEEEeCCCccH
Confidence            578999999875   37999999999999999999999998532211 1110000011 1111 2478999999999999


Q ss_pred             HHHHHHHHHCCCCce-EecCcHHhhh
Q 029759          151 MMAATDLLNAVSTHA-NYPSKPLTWF  175 (188)
Q Consensus       151 ~~a~~~L~~~G~~~v-~l~GG~~~W~  175 (188)
                      ..+++.|+.+||+++ +|.||+.+|.
T Consensus        79 ~~~a~~L~~~G~~~v~~l~GG~~a~~  104 (105)
T cd01525          79 ALFAAFLVKCGVPRVCILDGGINALK  104 (105)
T ss_pred             HHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence            999999999999998 7999999995

Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.

>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily

Probab=99.83  E-value=2.6e-20  Score=134.46  Aligned_cols=91  Identities=26%  Similarity=0.330  Sum_probs=76.4

Q ss_pred             ccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHh------ccCCCCcE
Q 029759           74 SVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST------RFRKHDEI  140 (188)
Q Consensus        74 ~i~~~~~~~~l~~-------~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~------~l~~~~~i  140 (188)
                      .|+++++.+++.+       +++|||+|+++||..||||||+|+|..           +.+...+.      .++++++|
T Consensus         3 ~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~-----------~~l~~~~~~~~~~~~~~~~~~v   71 (121)
T cd01530           3 RISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTK-----------DELEEFFLDKPGVASKKKRRVL   71 (121)
T ss_pred             ccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcH-----------HHHHHHHHHhhcccccCCCCEE
Confidence            4889999999864       379999999999999999999999983           22333322      15788999


Q ss_pred             EEEcC-CChHHHHHHHHHHHC------------CCCce-EecCcHHhhh
Q 029759          141 IVGCQ-SGKRSMMAATDLLNA------------VSTHA-NYPSKPLTWF  175 (188)
Q Consensus       141 vv~C~-sG~~a~~a~~~L~~~------------G~~~v-~l~GG~~~W~  175 (188)
                      |+||+ +|.||..+++.|+..            ||.++ +|.||+.+|.
T Consensus        72 v~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~  120 (121)
T cd01530          72 IFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF  120 (121)
T ss_pred             EEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence            99997 999999999999985            99998 7999999984

They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).

>smart00450 RHOD Rhodanese Homology Domain

Probab=99.83  E-value=3.8e-20  Score=127.06  Aligned_cols=94  Identities=28%  Similarity=0.344  Sum_probs=73.6

Q ss_pred             CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHH--hccCCCCcEEEEcCCChHHHHHHHHHHHCCCCc
Q 029759           87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS--TRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTH  164 (188)
Q Consensus        87 ~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~--~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~  164 (188)
                      +.+|||+|+.++|..+|||||+|+|+..............+....  ..++++++||+||.+|.++..+++.|+..||++
T Consensus         4 ~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~   83 (100)
T smart00450        4 KVVLLDVRSPEEYEGGHIPGAVNIPLSELLDRRGELDILEFEELLKRLGLDKDKPVVVYCRSGNRSAKAAWLLRELGFKN   83 (100)
T ss_pred             CEEEEECCCHHHhccCCCCCceeCCHHHhccCCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCcHHHHHHHHHHHcCCCc
Confidence            479999999999999999999999986433322111111222222  225678999999999999999999999999998


Q ss_pred             e-EecCcHHhhhhCCCc
Q 029759          165 A-NYPSKPLTWFLSNQL  180 (188)
Q Consensus       165 v-~l~GG~~~W~~~g~p  180 (188)
                      + +|.||+.+|...+.|
T Consensus        84 v~~l~GG~~~w~~~~~~  100 (100)
T smart00450       84 VYLLDGGYKEWSAAGPP  100 (100)
T ss_pred             eEEecCCHHHHHhcCCC
Confidence            8 799999999988754

An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.

>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family

Probab=99.83  E-value=4.2e-20  Score=130.24  Aligned_cols=101  Identities=26%  Similarity=0.365  Sum_probs=78.0

Q ss_pred             CHHHHHHHHh-CCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHH----HHhccCCCCcEEEEcCCChHH
Q 029759           76 PVRVAHELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE----VSTRFRKHDEIIVGCQSGKRS  150 (188)
Q Consensus        76 ~~~~~~~~l~-~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~----~~~~l~~~~~ivv~C~sG~~a  150 (188)
                      |++++++++. .+.+|||+|++.+|..||||||+|+|+............+.+..    ....++++++||+||.+|.++
T Consensus         1 s~~el~~~l~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~~~   80 (113)
T PF00581_consen    1 SPEELKEMLENESVLLIDVRSPEEYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGWRS   80 (113)
T ss_dssp             -HHHHHHHHTTTTEEEEEESSHHHHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSCHH
T ss_pred             CHHHHHhhhhCCCeEEEEeCCHHHHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccccc
Confidence            5889999993 45999999999999999999999999854322233333333333    333357789999999888887


Q ss_pred             HHHHHH-----HHHCCCCce-EecCcHHhhhh
Q 029759          151 MMAATD-----LLNAVSTHA-NYPSKPLTWFL  176 (188)
Q Consensus       151 ~~a~~~-----L~~~G~~~v-~l~GG~~~W~~  176 (188)
                      ..++..     |..+||+++ +|+|||.+|.+
T Consensus        81 ~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~  112 (113)
T PF00581_consen   81 GSAAAARVAWILKKLGFKNVYILDGGFEAWKA  112 (113)
T ss_dssp             HHHHHHHHHHHHHHTTTSSEEEETTHHHHHHH
T ss_pred             chhHHHHHHHHHHHcCCCCEEEecChHHHHhc
Confidence            776666     889999998 89999999976

; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....

>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain

Probab=99.83  E-value=6.4e-20  Score=135.29  Aligned_cols=101  Identities=17%  Similarity=0.174  Sum_probs=84.2

Q ss_pred             cCHHHHHHHHh-----CCCEEEecCCh--------hhHhc------------CCCCCeEEcCcccccC-C----CCCCCH
Q 029759           75 VPVRVAHELLQ-----AGHRYLDVRTP--------EEFSA------------GHATGAINVPYMYRVG-S----GMTKNL  124 (188)
Q Consensus        75 i~~~~~~~~l~-----~~~~iIDvR~~--------~ef~~------------ghIpgAinip~~~~~~-~----~~~~~~  124 (188)
                      ++++++.+.++     .+.+|||+|..        ++|..            ||||||+|+|+..... +    ..+.+.
T Consensus         1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~   80 (138)
T cd01445           1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE   80 (138)
T ss_pred             CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence            57888999887     34999999987        89988            9999999999864332 1    335556


Q ss_pred             HHHHHHHhc--cCCCCcEEEEcCC---ChHHHHHHHHHHHCCCCce-EecCcHHhhh
Q 029759          125 KFVEEVSTR--FRKHDEIIVGCQS---GKRSMMAATDLLNAVSTHA-NYPSKPLTWF  175 (188)
Q Consensus       125 ~~l~~~~~~--l~~~~~ivv~C~s---G~~a~~a~~~L~~~G~~~v-~l~GG~~~W~  175 (188)
                      +.+++.+..  ++++++||+||++   |..|+++++.|+.+|++++ +|+|||.+|.
T Consensus        81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~  137 (138)
T cd01445          81 AEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF  137 (138)
T ss_pred             HHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence            678888766  6788999999986   7899999999999999999 8999999995

Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.

>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily

Probab=99.82  E-value=4.2e-20  Score=127.80  Aligned_cols=84  Identities=20%  Similarity=0.316  Sum_probs=68.9

Q ss_pred             CCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHHHHHHHHCCCCce
Q 029759           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA  165 (188)
Q Consensus        86 ~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v  165 (188)
                      .+.+|||+|++++|..||||||+|+|+...     ....+.++. +..++++++||+||.+|.+|..+++.|+..||+++
T Consensus        11 ~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~-----~~~~~~~~~-~~~~~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v   84 (96)
T cd01529          11 PGTALLDVRAEDEYAAGHLPGKRSIPGAAL-----VLRSQELQA-LEAPGRATRYVLTCDGSLLARFAAQELLALGGKPV   84 (96)
T ss_pred             CCeEEEeCCCHHHHcCCCCCCcEeCCHHHh-----cCCHHHHHH-hhcCCCCCCEEEEeCChHHHHHHHHHHHHcCCCCE
Confidence            348999999999999999999999997421     112333333 33357789999999999999999999999999998


Q ss_pred             -EecCcHHhhh
Q 029759          166 -NYPSKPLTWF  175 (188)
Q Consensus       166 -~l~GG~~~W~  175 (188)
                       +|.||+.+|.
T Consensus        85 ~~l~GG~~~W~   95 (96)
T cd01529          85 ALLDGGTSAWV   95 (96)
T ss_pred             EEeCCCHHHhc
Confidence             7999999995

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.82  E-value=7.3e-20  Score=155.45  Aligned_cols=101  Identities=27%  Similarity=0.332  Sum_probs=89.2

Q ss_pred             ccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc--cCCCCcEEEEcCCChHHH
Q 029759           74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSM  151 (188)
Q Consensus        74 ~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~--l~~~~~ivv~C~sG~~a~  151 (188)
                      .++++++.++++++.+|||+|+++||..||||||+|+|+.            .+......  .+++++||+||++|.+|.
T Consensus         4 ~is~~el~~~l~~~~~ivDvR~~~e~~~ghIpgAi~ip~~------------~l~~~~~~~~~~~~~~IvvyC~~G~rs~   71 (376)
T PRK08762          4 EISPAEARARAAQGAVLIDVREAHERASGQAEGALRIPRG------------FLELRIETHLPDRDREIVLICASGTRSA   71 (376)
T ss_pred             eeCHHHHHHHHhCCCEEEECCCHHHHhCCcCCCCEECCHH------------HHHHHHhhhcCCCCCeEEEEcCCCcHHH
Confidence            5889999999988899999999999999999999999983            45444443  267899999999999999


Q ss_pred             HHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          152 MAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       152 ~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      .+++.|+..||+++ +|.||+.+|...++|+++...
T Consensus        72 ~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  107 (376)
T PRK08762         72 HAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRL  107 (376)
T ss_pred             HHHHHHHHcCCCceEeecCcHHHHHhcCCccccccC
Confidence            99999999999988 799999999999999887643

>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional

Probab=99.82  E-value=8.7e-20  Score=149.38  Aligned_cols=113  Identities=16%  Similarity=0.091  Sum_probs=93.9

Q ss_pred             cccCHHHHHHHHhCC-CEEEecCC----------hhhHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHHhc--c
Q 029759           73 TSVPVRVAHELLQAG-HRYLDVRT----------PEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--F  134 (188)
Q Consensus        73 ~~i~~~~~~~~l~~~-~~iIDvR~----------~~ef~~ghIpgAinip~~~~~~-----~~~~~~~~~l~~~~~~--l  134 (188)
                      ..++++++.++++++ ++|||+|+          +.+|..||||||+|+|+.....     ...+.+++.+++.+..  +
T Consensus         5 ~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi   84 (281)
T PRK11493          5 WFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV   84 (281)
T ss_pred             cccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            358999999999764 89999996          7889999999999999754322     1334567788887777  5


Q ss_pred             CCCCcEEEEcCCCh-HHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcccccc
Q 029759          135 RKHDEIIVGCQSGK-RSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK  185 (188)
Q Consensus       135 ~~~~~ivv~C~sG~-~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~  185 (188)
                      +++++||+||.++. .++++++.|..+||+++ +|+||+.+|..+++|+++..
T Consensus        85 ~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~  137 (281)
T PRK11493         85 NQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGA  137 (281)
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCC
Confidence            78899999999875 47789999999999998 89999999999999998764

>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional

Probab=99.80  E-value=2.9e-19  Score=159.47  Aligned_cols=113  Identities=16%  Similarity=0.070  Sum_probs=97.0

Q ss_pred             cccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCeEEcCccccc-----CCCCCCCHHHHHHHHhc--cCCCCcEEEEc
Q 029759           73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FRKHDEIIVGC  144 (188)
Q Consensus        73 ~~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~-----~~~~~~~~~~l~~~~~~--l~~~~~ivv~C  144 (188)
                      ..|+++++.++++++ .+|||+|++++|..||||||+|+|+....     ..+.+.+.+.+++.+..  ++++++||+||
T Consensus         9 ~lIs~~eL~~~l~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~VVvYd   88 (610)
T PRK09629          9 LVIEPNDLLERLDAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVYVVYD   88 (610)
T ss_pred             ceecHHHHHHHhcCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEEC
Confidence            468999999999764 89999999999999999999999975322     13566667788888777  47889999999


Q ss_pred             CCC-hHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcccccc
Q 029759          145 QSG-KRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK  185 (188)
Q Consensus       145 ~sG-~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~  185 (188)
                      ++| ..|.+++|.|+.+||+++ +|+||+.+|..+|+|++++.
T Consensus        89 ~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~  131 (610)
T PRK09629         89 DEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDV  131 (610)
T ss_pred             CCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCC
Confidence            976 578899999999999999 89999999999999988764

>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1

Probab=99.80  E-value=1.7e-19  Score=123.91  Aligned_cols=78  Identities=23%  Similarity=0.260  Sum_probs=65.1

Q ss_pred             CCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHH-HHHhccC-CCCcEEEEcCCChH--HHHHHHHHHHCC
Q 029759           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFR-KHDEIIVGCQSGKR--SMMAATDLLNAV  161 (188)
Q Consensus        86 ~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~-~~~~~l~-~~~~ivv~C~sG~~--a~~a~~~L~~~G  161 (188)
                      ++++|||+|++++|..+|||||+|+|..            .+. .....++ ++++||+||.+|.+  |..+++.|+..|
T Consensus         9 ~~~~liDvR~~~e~~~~hi~ga~~ip~~------------~~~~~~~~~~~~~~~~ivl~c~~G~~~~s~~aa~~L~~~G   76 (92)
T cd01532           9 EEIALIDVREEDPFAQSHPLWAANLPLS------------RLELDAWVRIPRRDTPIVVYGEGGGEDLAPRAARRLSELG   76 (92)
T ss_pred             CCeEEEECCCHHHHhhCCcccCeeCCHH------------HHHhhhHhhCCCCCCeEEEEeCCCCchHHHHHHHHHHHcC
Confidence            3489999999999999999999999984            222 2222243 58899999999876  689999999999


Q ss_pred             CCce-EecCcHHhhh
Q 029759          162 STHA-NYPSKPLTWF  175 (188)
Q Consensus       162 ~~~v-~l~GG~~~W~  175 (188)
                      |+++ ++.||+.+|.
T Consensus        77 ~~~v~~l~GG~~~W~   91 (92)
T cd01532          77 YTDVALLEGGLQGWR   91 (92)
T ss_pred             ccCEEEccCCHHHHc
Confidence            9998 7999999996

This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.

>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE

Probab=99.80  E-value=4.2e-19  Score=124.12  Aligned_cols=80  Identities=31%  Similarity=0.465  Sum_probs=67.6

Q ss_pred             CCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc--CCCCcEEEEcCCChHHHHHHHHHHHCCCC
Q 029759           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLLNAVST  163 (188)
Q Consensus        86 ~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l--~~~~~ivv~C~sG~~a~~a~~~L~~~G~~  163 (188)
                      ....+||+|+++||..||||||+|+|+.            .+......+  +++++||+||.+|.+|..++..|..+||+
T Consensus        17 ~~~~lIDvR~~~ef~~ghIpgAinip~~------------~l~~~l~~~~~~~~~~vvlyC~~G~rS~~aa~~L~~~G~~   84 (101)
T TIGR02981        17 AAEHWIDVRIPEQYQQEHIQGAINIPLK------------EIKEHIATAVPDKNDTVKLYCNAGRQSGMAKDILLDMGYT   84 (101)
T ss_pred             cCCEEEECCCHHHHhcCCCCCCEECCHH------------HHHHHHHHhCCCCCCeEEEEeCCCHHHHHHHHHHHHcCCC
Confidence            3478999999999999999999999984            444444332  46789999999999999999999999999


Q ss_pred             ceEecCcHHhhhhC
Q 029759          164 HANYPSKPLTWFLS  177 (188)
Q Consensus       164 ~v~l~GG~~~W~~~  177 (188)
                      ++...||+.+|...
T Consensus        85 ~v~~~GG~~~~~~~   98 (101)
T TIGR02981        85 HAENAGGIKDIAMP   98 (101)
T ss_pred             eEEecCCHHHhhhh
Confidence            99656999999753

Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.

>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional

Probab=99.80  E-value=3.9e-19  Score=124.87  Aligned_cols=78  Identities=29%  Similarity=0.419  Sum_probs=67.2

Q ss_pred             CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc--CCCCcEEEEcCCChHHHHHHHHHHHCCCCc
Q 029759           87 GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLLNAVSTH  164 (188)
Q Consensus        87 ~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l--~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~  164 (188)
                      +-++||+|+++||..||||||+|+|+.            .+...+..+  +++++||+||++|.+|..++..|..+||++
T Consensus        20 ~~~lIDvR~~~ef~~ghIpGAiniP~~------------~l~~~l~~l~~~~~~~IVlyC~~G~rS~~aa~~L~~~G~~~   87 (104)
T PRK10287         20 AEHWIDVRVPEQYQQEHVQGAINIPLK------------EVKERIATAVPDKNDTVKLYCNAGRQSGQAKEILSEMGYTH   87 (104)
T ss_pred             CCEEEECCCHHHHhcCCCCccEECCHH------------HHHHHHHhcCCCCCCeEEEEeCCChHHHHHHHHHHHcCCCe
Confidence            368999999999999999999999984            444444443  456889999999999999999999999999


Q ss_pred             eEecCcHHhhhh
Q 029759          165 ANYPSKPLTWFL  176 (188)
Q Consensus       165 v~l~GG~~~W~~  176 (188)
                      ++..||+.+|..
T Consensus        88 v~~~GG~~~~~~   99 (104)
T PRK10287         88 AENAGGLKDIAM   99 (104)
T ss_pred             EEecCCHHHHhh
Confidence            966899999964

>PLN02723 3-mercaptopyruvate sulfurtransferase

Probab=99.79  E-value=5.8e-19  Score=146.96  Aligned_cols=112  Identities=14%  Similarity=0.072  Sum_probs=92.5

Q ss_pred             ccCHHHHHHHHhC-CCEEEecC--------C-hhhHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHHhc--cCC
Q 029759           74 SVPVRVAHELLQA-GHRYLDVR--------T-PEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRK  136 (188)
Q Consensus        74 ~i~~~~~~~~l~~-~~~iIDvR--------~-~~ef~~ghIpgAinip~~~~~~-----~~~~~~~~~l~~~~~~--l~~  136 (188)
                      .|+++++.+++++ +.+|||+|        . ..+|..||||||+|+|+.....     ...+.+++.+++.+..  +++
T Consensus        23 lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~~Gi~~  102 (320)
T PLN02723         23 VVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSALGIEN  102 (320)
T ss_pred             eecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHHcCCCC
Confidence            6899999999975 48999996        3 3789999999999999754322     2345567788888877  467


Q ss_pred             CCcEEEEcCCCh-HHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcccccc
Q 029759          137 HDEIIVGCQSGK-RSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK  185 (188)
Q Consensus       137 ~~~ivv~C~sG~-~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~  185 (188)
                      +++||+||++|. .+.++++.|+.+||++| +|+||+.+|..+|+|+++..
T Consensus       103 ~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~  153 (320)
T PLN02723        103 KDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSA  153 (320)
T ss_pred             CCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCC
Confidence            899999998875 46788999999999998 89999999999999998753

>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein

Probab=99.79  E-value=5.2e-19  Score=119.49  Aligned_cols=84  Identities=42%  Similarity=0.605  Sum_probs=69.7

Q ss_pred             HHHHh-CCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHH-HHhccCCCCcEEEEcCCChHHHHHHHHHH
Q 029759           81 HELLQ-AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE-VSTRFRKHDEIIVGCQSGKRSMMAATDLL  158 (188)
Q Consensus        81 ~~~l~-~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~-~~~~l~~~~~ivv~C~sG~~a~~a~~~L~  158 (188)
                      .++++ .+..|||+|++.+|..+|||||+|+|+.           +.... ....++++++||+||++|.+|..+++.|+
T Consensus         3 ~~~~~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~-----------~~~~~~~~~~~~~~~~vv~~c~~~~~a~~~~~~l~   71 (89)
T cd00158           3 KELLDDEDAVLLDVREPEEYAAGHIPGAINIPLS-----------ELEERAALLELDKDKPIVVYCRSGNRSARAAKLLR   71 (89)
T ss_pred             HHHhcCCCeEEEECCCHHHHhccccCCCEecchH-----------HHhhHHHhhccCCCCeEEEEeCCCchHHHHHHHHH
Confidence            34443 4589999999999999999999999984           22221 13346788999999999999999999999


Q ss_pred             HCCCCce-EecCcHHhhh
Q 029759          159 NAVSTHA-NYPSKPLTWF  175 (188)
Q Consensus       159 ~~G~~~v-~l~GG~~~W~  175 (188)
                      ..||+++ +|.||+.+|.
T Consensus        72 ~~G~~~v~~l~gG~~~w~   89 (89)
T cd00158          72 KAGGTNVYNLEGGMLAWK   89 (89)
T ss_pred             HhCcccEEEecCChhhcC
Confidence            9999998 7999999994

The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.

>PRK01415 hypothetical protein; Validated

Probab=99.78  E-value=1e-18  Score=139.64  Aligned_cols=99  Identities=16%  Similarity=0.134  Sum_probs=80.4

Q ss_pred             cccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHH
Q 029759           73 TSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  151 (188)
Q Consensus        73 ~~i~~~~~~~~l~~-~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~  151 (188)
                      ..++++++.+++++ +++|||+|++.||..||||||+|+|.....+     .+..+. ....++++++|++||.+|.||.
T Consensus       112 ~~i~p~e~~~ll~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e-----~~~~~~-~~~~~~k~k~Iv~yCtgGiRs~  185 (247)
T PRK01415        112 EYIEPKDWDEFITKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQ-----FPAWVQ-QNQELLKGKKIAMVCTGGIRCE  185 (247)
T ss_pred             cccCHHHHHHHHhCCCcEEEECCCHHHHhcCCcCCCCCCChHHHhh-----hHHHHh-hhhhhcCCCeEEEECCCChHHH
Confidence            46999999999975 4999999999999999999999999731000     001111 1233578899999999999999


Q ss_pred             HHHHHHHHCCCCce-EecCcHHhhhhC
Q 029759          152 MAATDLLNAVSTHA-NYPSKPLTWFLS  177 (188)
Q Consensus       152 ~a~~~L~~~G~~~v-~l~GG~~~W~~~  177 (188)
                      .++..|...||++| .|.||+.+|.++
T Consensus       186 kAa~~L~~~Gf~~Vy~L~GGi~~w~~~  212 (247)
T PRK01415        186 KSTSLLKSIGYDEVYHLKGGILQYLED  212 (247)
T ss_pred             HHHHHHHHcCCCcEEEechHHHHHHHh
Confidence            99999999999999 699999999875

>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.78  E-value=1.2e-18  Score=122.56  Aligned_cols=87  Identities=34%  Similarity=0.438  Sum_probs=76.0

Q ss_pred             CCCEEEecCChhhHhcCCCCC-eEEcCcccccCCCCCCCHHHHHHHHhc--cCCCCcEEEEcCCChHHHHHHHHHHHCCC
Q 029759           86 AGHRYLDVRTPEEFSAGHATG-AINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAVS  162 (188)
Q Consensus        86 ~~~~iIDvR~~~ef~~ghIpg-Ainip~~~~~~~~~~~~~~~l~~~~~~--l~~~~~ivv~C~sG~~a~~a~~~L~~~G~  162 (188)
                      .+.++||+|++.||..+|||| ++|+|..            .+......  ++++++||+||.+|.||..++..|+.+||
T Consensus        19 ~~~~liDvR~~~e~~~~~i~~~~~~ip~~------------~~~~~~~~~~~~~~~~ivv~C~~G~rS~~aa~~L~~~G~   86 (110)
T COG0607          19 EDAVLLDVREPEEYERGHIPGAAINIPLS------------ELKAAENLLELPDDDPIVVYCASGVRSAAAAAALKLAGF   86 (110)
T ss_pred             CCCEEEeccChhHhhhcCCCcceeeeecc------------cchhhhcccccCCCCeEEEEeCCCCChHHHHHHHHHcCC
Confidence            359999999999999999999 9999985            33333222  46889999999999999999999999999


Q ss_pred             Cce-EecCcHHhhhhCCCccccc
Q 029759          163 THA-NYPSKPLTWFLSNQLLTEE  184 (188)
Q Consensus       163 ~~v-~l~GG~~~W~~~g~p~~~~  184 (188)
                      +++ .+.||+.+|..+++|++..
T Consensus        87 ~~~~~l~gG~~~w~~~~~~~~~~  109 (110)
T COG0607          87 TNVYNLDGGIDAWKGAGLPLVRG  109 (110)
T ss_pred             ccccccCCcHHHHHhcCCCcccC
Confidence            998 8999999999999988754

>PRK05320 rhodanese superfamily protein; Provisional

Probab=99.77  E-value=2.3e-18  Score=139.05  Aligned_cols=100  Identities=17%  Similarity=0.162  Sum_probs=79.6

Q ss_pred             CcccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEc
Q 029759           72 PTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGC  144 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~-------~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C  144 (188)
                      ...++++++.+++++       +.+|||||++.||+.||||||+|+|+.+..+     .++.+......+ ++++|++||
T Consensus       109 ~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~-----~~~~l~~~~~~~-kdk~IvvyC  182 (257)
T PRK05320        109 APSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTE-----FPEALAAHRADL-AGKTVVSFC  182 (257)
T ss_pred             CceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhh-----hHHHHHhhhhhc-CCCeEEEEC
Confidence            456999999998865       2789999999999999999999999841100     011122222223 689999999


Q ss_pred             CCChHHHHHHHHHHHCCCCce-EecCcHHhhhhC
Q 029759          145 QSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLS  177 (188)
Q Consensus       145 ~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~  177 (188)
                      .+|.||..++..|+..||+++ ++.||+.+|.++
T Consensus       183 ~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~  216 (257)
T PRK05320        183 TGGIRCEKAAIHMQEVGIDNVYQLEGGILKYFEE  216 (257)
T ss_pred             CCCHHHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence            999999999999999999988 799999999875

>PRK07411 hypothetical protein; Validated

Probab=99.75  E-value=5.8e-18  Score=144.31  Aligned_cols=103  Identities=23%  Similarity=0.265  Sum_probs=83.2

Q ss_pred             CcccCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCCh
Q 029759           72 PTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~~---~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~  148 (188)
                      ...++++++.++++++   .+|||+|+++||..||||||+|+|+.+....      ... ..+..++++++||+||.+|.
T Consensus       281 ~~~Is~~el~~~l~~~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~~~------~~~-~~l~~l~~d~~IVvyC~~G~  353 (390)
T PRK07411        281 IPEMTVTELKALLDSGADDFVLIDVRNPNEYEIARIPGSVLVPLPDIENG------PGV-EKVKELLNGHRLIAHCKMGG  353 (390)
T ss_pred             cCccCHHHHHHHHhCCCCCeEEEECCCHHHhccCcCCCCEEccHHHhhcc------cch-HHHhhcCCCCeEEEECCCCH
Confidence            3469999999998753   6899999999999999999999998522110      001 12334567899999999999


Q ss_pred             HHHHHHHHHHHCCCCceEecCcHHhhhhCCCcc
Q 029759          149 RSMMAATDLLNAVSTHANYPSKPLTWFLSNQLL  181 (188)
Q Consensus       149 ~a~~a~~~L~~~G~~~v~l~GG~~~W~~~g~p~  181 (188)
                      ||..+++.|+.+||+++.+.||+.+|..+..|.
T Consensus       354 RS~~aa~~L~~~G~~~~~l~GG~~~W~~~~~p~  386 (390)
T PRK07411        354 RSAKALGILKEAGIEGTNVKGGITAWSREVDPS  386 (390)
T ss_pred             HHHHHHHHHHHcCCCeEEecchHHHHHHhcCCC
Confidence            999999999999999778999999998875554

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=99.75  E-value=6e-18  Score=144.38  Aligned_cols=97  Identities=25%  Similarity=0.376  Sum_probs=82.7

Q ss_pred             cccCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHH-HHHhccCCCCcEEEEcCCChH
Q 029759           73 TSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVE-EVSTRFRKHDEIIVGCQSGKR  149 (188)
Q Consensus        73 ~~i~~~~~~~~l~~~--~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~-~~~~~l~~~~~ivv~C~sG~~  149 (188)
                      ..++++++.++++++  .+|||+|+++||..||||||+|+|+.+           ... ...+.++++++||+||++|.+
T Consensus       287 ~~Is~~el~~~l~~~~~~~lIDvR~~~ef~~ghIpGAinip~~~-----------l~~~~~~~~l~~d~~iVvyC~~G~r  355 (392)
T PRK07878        287 STITPRELKEWLDSGKKIALIDVREPVEWDIVHIPGAQLIPKSE-----------ILSGEALAKLPQDRTIVLYCKTGVR  355 (392)
T ss_pred             CccCHHHHHHHHhCCCCeEEEECCCHHHHhcCCCCCCEEcChHH-----------hcchhHHhhCCCCCcEEEEcCCChH
Confidence            468999999998764  689999999999999999999999841           111 234457889999999999999


Q ss_pred             HHHHHHHHHHCCCCce-EecCcHHhhhhCCCc
Q 029759          150 SMMAATDLLNAVSTHA-NYPSKPLTWFLSNQL  180 (188)
Q Consensus       150 a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p  180 (188)
                      |..+++.|+..||+++ +|.||+.+|..+..+
T Consensus       356 S~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~  387 (392)
T PRK07878        356 SAEALAALKKAGFSDAVHLQGGVVAWAKQVDP  387 (392)
T ss_pred             HHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence            9999999999999988 799999999887443

>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily

Probab=99.75  E-value=5.5e-18  Score=120.60  Aligned_cols=95  Identities=19%  Similarity=0.268  Sum_probs=72.3

Q ss_pred             ccCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc--cCCCCcEEEEcC-CC
Q 029759           74 SVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQ-SG  147 (188)
Q Consensus        74 ~i~~~~~~~~l~~~---~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~--l~~~~~ivv~C~-sG  147 (188)
                      .++++++.+++..+   .+|||+|+. ||..||||||+|+|+....        ..+.+....  .+++++||+||. +|
T Consensus         3 ~is~~~l~~~~~~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~--------~~~~~~~~~~~~~~~~~iv~yC~~~~   73 (113)
T cd01531           3 YISPAQLKGWIRNGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFK--------AQLNQLVQLLSGSKKDTVVFHCALSQ   73 (113)
T ss_pred             cCCHHHHHHHHHcCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHh--------hCHHHHHHHHhcCCCCeEEEEeecCC
Confidence            57899999998753   689999999 9999999999999984110        112222222  256789999998 66


Q ss_pred             hHHHHHHHHHHH--------CCCCce-EecCcHHhhhhC
Q 029759          148 KRSMMAATDLLN--------AVSTHA-NYPSKPLTWFLS  177 (188)
Q Consensus       148 ~~a~~a~~~L~~--------~G~~~v-~l~GG~~~W~~~  177 (188)
                      .++..++..|..        .|+.++ ++.||+.+|...
T Consensus        74 ~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~  112 (113)
T cd01531          74 VRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS  112 (113)
T ss_pred             cchHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence            888888777643        499988 799999999753

Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=99.74  E-value=9.4e-18  Score=139.07  Aligned_cols=99  Identities=20%  Similarity=0.191  Sum_probs=79.8

Q ss_pred             cccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHH
Q 029759           73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  151 (188)
Q Consensus        73 ~~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~  151 (188)
                      ..++++++.++++++ .+|||+|++.||..||||||+|+|+....+     .++.+.... ...++++||+||.+|.|+.
T Consensus       112 ~~is~~el~~~l~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~-----~~~~l~~~~-~~~kdk~IvvyC~~G~Rs~  185 (314)
T PRK00142        112 TYLKPKEVNELLDDPDVVFIDMRNDYEYEIGHFENAIEPDIETFRE-----FPPWVEENL-DPLKDKKVVMYCTGGIRCE  185 (314)
T ss_pred             cccCHHHHHHHhcCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhh-----hHHHHHHhc-CCCCcCeEEEECCCCcHHH
Confidence            468999999988764 899999999999999999999999842110     011111111 2357899999999999999


Q ss_pred             HHHHHHHHCCCCce-EecCcHHhhhhC
Q 029759          152 MAATDLLNAVSTHA-NYPSKPLTWFLS  177 (188)
Q Consensus       152 ~a~~~L~~~G~~~v-~l~GG~~~W~~~  177 (188)
                      .++..|...||++| .|.||+.+|...
T Consensus       186 ~aa~~L~~~Gf~~V~~L~GGi~~w~~~  212 (314)
T PRK00142        186 KASAWMKHEGFKEVYQLEGGIITYGED  212 (314)
T ss_pred             HHHHHHHHcCCCcEEEecchHHHHHHh
Confidence            99999999999988 799999999774

>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily

Probab=99.72  E-value=1.5e-17  Score=118.39  Aligned_cols=93  Identities=20%  Similarity=0.287  Sum_probs=68.3

Q ss_pred             ccCHHHHHHHHhCC-------CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc--CCCCcEEEEc
Q 029759           74 SVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGC  144 (188)
Q Consensus        74 ~i~~~~~~~~l~~~-------~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l--~~~~~ivv~C  144 (188)
                      .++++++++++.++       .+|||+|++ ||..||||||+|+|+.. +       .+.+......+  .+.++||+||
T Consensus         3 ~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~-~-------~~~~~~~~~~~~~~~~~~iv~~C   73 (113)
T cd01443           3 YISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQS-C-------YQTLPQVYALFSLAGVKLAIFYC   73 (113)
T ss_pred             ccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhH-H-------HHHHHHHHHHhhhcCCCEEEEEC
Confidence            47899999998763       789999999 99999999999999841 1       01122222222  3457899999


Q ss_pred             CC-ChHHHHHHHHHH----HCCC--Cce-EecCcHHhhh
Q 029759          145 QS-GKRSMMAATDLL----NAVS--THA-NYPSKPLTWF  175 (188)
Q Consensus       145 ~s-G~~a~~a~~~L~----~~G~--~~v-~l~GG~~~W~  175 (188)
                      .+ |.||..++..|.    ..||  .++ +|.||+.+|.
T Consensus        74 ~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~  112 (113)
T cd01443          74 GSSQGRGPRAARWFADYLRKVGESLPKSYILTGGIKAWY  112 (113)
T ss_pred             CCCCcccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence            97 578777665543    4576  567 6899999995

Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=99.71  E-value=3.1e-17  Score=137.43  Aligned_cols=108  Identities=23%  Similarity=0.211  Sum_probs=79.5

Q ss_pred             CHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccC----------CC---------CCCC---HHHHHHHHhc
Q 029759           76 PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVG----------SG---------MTKN---LKFVEEVSTR  133 (188)
Q Consensus        76 ~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~----------~~---------~~~~---~~~l~~~~~~  133 (188)
                      ...++.+++.++.+|||||++.||..||||||+|+|+.++.+          .|         .+.+   .+.+.+.+..
T Consensus         4 ~~~~~~~~~~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~~~~~~~~~~   83 (345)
T PRK11784          4 DAQDFRALFLNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIAAHREEAWAD   83 (345)
T ss_pred             cHHHHHHHHhCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHHHHHHHHHHh
Confidence            356777777778999999999999999999999999853321          01         1111   1122222223


Q ss_pred             cC-CCCcEEEEcC-CChHHHHHHHHHHHCCCCceEecCcHHhhhhCCCcccc
Q 029759          134 FR-KHDEIIVGCQ-SGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLTE  183 (188)
Q Consensus       134 l~-~~~~ivv~C~-sG~~a~~a~~~L~~~G~~~v~l~GG~~~W~~~g~p~~~  183 (188)
                      ++ ++++||+||. +|.||..+++.|...||+...+.||+.+|...+.+...
T Consensus        84 ~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~awr~~~~~~~~  135 (345)
T PRK11784         84 FPRANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAYRRFVIDTLE  135 (345)
T ss_pred             cccCCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHHHHhhHHHHh
Confidence            33 7899999995 78999999999999999644899999999987654433

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.71  E-value=5.8e-17  Score=129.84  Aligned_cols=164  Identities=24%  Similarity=0.318  Sum_probs=127.2

Q ss_pred             cccccCCCCCccCCCchhh-hhcccccccCCceeEEeec--CCC-----------cccccccccccccc---cccCCCc-
Q 029759           12 FAAGASSLPPVLCPHGNNR-RGLLSLTVDQQRCDNIGFI--SSK-----------ILSFCPKASLRGNL---EAVGVPT-   73 (188)
Q Consensus        12 ~~~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~v~~~~--~~~-----------~~~~~~~~~~~~~~---~~~~~~~-   73 (188)
                      .+.+.++..++.-|..+.| +....+|+++...+|+|+.  .+.           .|++.++..+++++   .+.+.+. 
T Consensus        56 ~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~  135 (286)
T KOG1529|consen   56 IISYPSSPYRHMLPTAEHFAEYASRLGVDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVD  135 (286)
T ss_pred             ccccCCCcccccCccHHHHHHHHHhcCCCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccc
Confidence            5677888999999999999 9999999999999999987  322           23788888888866   1111111 


Q ss_pred             ---------------ccCHHHHHHH-------H-hCCCEEEecCChhhHh-----------cCCCCCeEEcCcccccC-C
Q 029759           74 ---------------SVPVRVAHEL-------L-QAGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVG-S  118 (188)
Q Consensus        74 ---------------~i~~~~~~~~-------l-~~~~~iIDvR~~~ef~-----------~ghIpgAinip~~~~~~-~  118 (188)
                                     .++...+..+       + .+++.+||+|...+|.           .||||||+|+|+.+.+. +
T Consensus       136 s~~~~~p~~~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~  215 (286)
T KOG1529|consen  136 SSKVETPYSPIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPD  215 (286)
T ss_pred             cccccCCCCCccchhhcchHHHHHHhhccccccccccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhcccc
Confidence                           1222222211       1 1249999999999996           68999999999988776 4


Q ss_pred             CCCCCHHHHHHHHhc--cCCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhh
Q 029759          119 GMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFL  176 (188)
Q Consensus       119 ~~~~~~~~l~~~~~~--l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~  176 (188)
                      +..++++.+...+..  +..++|+|+.|+.|+.++..+..|.+.| .++ .|+|+|.+|..
T Consensus       216 g~~k~~edl~~~f~~~~l~~~~p~~~sC~~Gisa~~i~~al~r~g-~~~~lYdGS~~Ew~~  275 (286)
T KOG1529|consen  216 GFIKPAEDLKHLFAQKGLKLSKPVIVSCGTGISASIIALALERSG-PDAKLYDGSWTEWAL  275 (286)
T ss_pred             cccCCHHHHHHHHHhcCcccCCCEEEeeccchhHHHHHHHHHhcC-CCcceecccHHHHhh
Confidence            555557788877765  5668999999999999999999999999 555 99999999985

>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]

Probab=99.70  E-value=1.8e-16  Score=129.04  Aligned_cols=115  Identities=17%  Similarity=0.101  Sum_probs=97.1

Q ss_pred             CcccCHHHHHHHHhC------CCEEEecCCh--hhHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHHhc--cCC
Q 029759           72 PTSVPVRVAHELLQA------GHRYLDVRTP--EEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRK  136 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~------~~~iIDvR~~--~ef~~ghIpgAinip~~~~~~-----~~~~~~~~~l~~~~~~--l~~  136 (188)
                      ...++++.+.+.+++      +..+++++..  ++|..+|||||+++++...+.     .+++.+++.+.+.+..  |++
T Consensus        10 ~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~~   89 (285)
T COG2897          10 EFLVSPDWLAENLDDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIRN   89 (285)
T ss_pred             ceEEcHHHHHhhccccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence            346899999998864      3666666665  899999999999999876553     3678889999999887  688


Q ss_pred             CCcEEEEcCC-ChHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          137 HDEIIVGCQS-GKRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       137 ~~~ivv~C~s-G~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      +.+||+|.+. +..|.+++|.|+.+|+++| +|+||+.+|.++|+|++++..
T Consensus        90 d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~  141 (285)
T COG2897          90 DDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPP  141 (285)
T ss_pred             CCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCC
Confidence            8999999976 4679999999999999998 899999999999999998554

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=99.69  E-value=1.2e-16  Score=134.73  Aligned_cols=90  Identities=31%  Similarity=0.378  Sum_probs=75.3

Q ss_pred             ccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHH--hccCCCCcEEEEcCCChHHH
Q 029759           74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS--TRFRKHDEIIVGCQSGKRSM  151 (188)
Q Consensus        74 ~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~--~~l~~~~~ivv~C~sG~~a~  151 (188)
                      .++++++.++ ..+.+|||+|+++||..+|||||+|+|+.            .+....  ..++++++||+||++|.+|.
T Consensus       262 ~i~~~~~~~~-~~~~~IIDVR~~~ef~~ghIpgAinip~~------------~l~~~~~~~~~~~~~~IvvyC~~G~rS~  328 (355)
T PRK05597        262 VLDVPRVSAL-PDGVTLIDVREPSEFAAYSIPGAHNVPLS------------AIREGANPPSVSAGDEVVVYCAAGVRSA  328 (355)
T ss_pred             ccCHHHHHhc-cCCCEEEECCCHHHHccCcCCCCEEeCHH------------HhhhccccccCCCCCeEEEEcCCCHHHH
Confidence            5778888744 45589999999999999999999999984            222211  12567899999999999999


Q ss_pred             HHHHHHHHCCCCce-EecCcHHhhhh
Q 029759          152 MAATDLLNAVSTHA-NYPSKPLTWFL  176 (188)
Q Consensus       152 ~a~~~L~~~G~~~v-~l~GG~~~W~~  176 (188)
                      .+++.|+..||+++ ++.||+.+|..
T Consensus       329 ~Aa~~L~~~G~~nV~~L~GGi~~W~~  354 (355)
T PRK05597        329 QAVAILERAGYTGMSSLDGGIEGWLD  354 (355)
T ss_pred             HHHHHHHHcCCCCEEEecCcHHHHhh
Confidence            99999999999998 79999999964

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=99.69  E-value=1e-16  Score=132.56  Aligned_cols=96  Identities=24%  Similarity=0.203  Sum_probs=70.6

Q ss_pred             CEEEecCChhhHhcCCCCCeEEcCcccccCC---CCC-------------------CCHHHHHHHHhccCCCCcEEEEcC
Q 029759           88 HRYLDVRTPEEFSAGHATGAINVPYMYRVGS---GMT-------------------KNLKFVEEVSTRFRKHDEIIVGCQ  145 (188)
Q Consensus        88 ~~iIDvR~~~ef~~ghIpgAinip~~~~~~~---~~~-------------------~~~~~l~~~~~~l~~~~~ivv~C~  145 (188)
                      .+|||||++.||..||||||+|+|+..+.+.   |..                   .-++.+.+.....+++..||+||.
T Consensus         3 ~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC~   82 (311)
T TIGR03167         3 DPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYCW   82 (311)
T ss_pred             CEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEEC
Confidence            6899999999999999999999998532210   100                   011223333333445556999995


Q ss_pred             -CChHHHHHHHHHHHCCCCceEecCcHHhhhhCCCcccc
Q 029759          146 -SGKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLLTE  183 (188)
Q Consensus       146 -sG~~a~~a~~~L~~~G~~~v~l~GG~~~W~~~g~p~~~  183 (188)
                       +|.+|..+++.|..+||+..++.||+.+|...+.+...
T Consensus        83 ~gG~RS~~aa~~L~~~G~~v~~L~GG~~aw~~~~~~~~~  121 (311)
T TIGR03167        83 RGGMRSGSLAWLLAQIGFRVPRLEGGYKAYRRFVIDQLE  121 (311)
T ss_pred             CCChHHHHHHHHHHHcCCCEEEecChHHHHHHhhhhhhh
Confidence             78999999999999999644899999999988765544

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase

Probab=99.64  E-value=1.4e-15  Score=111.08  Aligned_cols=101  Identities=18%  Similarity=0.097  Sum_probs=72.9

Q ss_pred             cCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCeEEcCcccccC----CC------CCCCHHHHHHHHhccCCCCcEE
Q 029759           75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVG----SG------MTKNLKFVEEVSTRFRKHDEII  141 (188)
Q Consensus        75 i~~~~~~~~l~~---~~~iIDvR~~~ef~~ghIpgAinip~~~~~~----~~------~~~~~~~l~~~~~~l~~~~~iv  141 (188)
                      |+++++.++++.   +.+|||+|+..+|..||||||+|+|+.....    .+      .+..++.... +... ++++||
T Consensus         2 is~~~l~~~l~~~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~-~~~~VV   79 (132)
T cd01446           2 IDCAWLAALLREGGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDR-LRRG-ESLAVV   79 (132)
T ss_pred             cCHHHHHHHHhcCCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHH-HhcC-CCCeEE
Confidence            789999999974   4899999999999999999999999863221    01      1222222222 2222 578999


Q ss_pred             EEcCCChH---------HHHHHHHHHH--CCCCce-EecCcHHhhhhC
Q 029759          142 VGCQSGKR---------SMMAATDLLN--AVSTHA-NYPSKPLTWFLS  177 (188)
Q Consensus       142 v~C~sG~~---------a~~a~~~L~~--~G~~~v-~l~GG~~~W~~~  177 (188)
                      +||+++.+         +..++..|..  .|+.++ .|+||+.+|.+.
T Consensus        80 vYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~  127 (132)
T cd01446          80 VYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE  127 (132)
T ss_pred             EEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence            99998764         5566666766  466778 799999999763

This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=99.60  E-value=2.9e-15  Score=126.83  Aligned_cols=86  Identities=19%  Similarity=0.222  Sum_probs=71.6

Q ss_pred             ccCHHHHHHHHhCC-CEEEecCChhhHhcCCCC---CeEEcCcccccCCCCCCCHHHHH------HHHhccCCCCcEEEE
Q 029759           74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT---GAINVPYMYRVGSGMTKNLKFVE------EVSTRFRKHDEIIVG  143 (188)
Q Consensus        74 ~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIp---gAinip~~~~~~~~~~~~~~~l~------~~~~~l~~~~~ivv~  143 (188)
                      .++++++.++++++ .++||||+++||+.||||   ||+|+|+.            .+.      .....++++ +||+|
T Consensus       272 ~~~~~el~~~l~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~------------~l~~~~~~~~~l~~~~~~-~Ivv~  338 (370)
T PRK05600        272 RTDTTSLIDATLNGSATLLDVREPHEVLLKDLPEGGASLKLPLS------------AITDDADILHALSPIDGD-NVVVY  338 (370)
T ss_pred             ccCHHHHHHHHhcCCeEEEECCCHHHhhhccCCCCCccEeCcHH------------HhhcchhhhhhccccCCC-cEEEE
Confidence            58899999998765 799999999999999998   59999984            232      122233444 89999


Q ss_pred             cCCChHHHHHHHHHHHCCCCc-e-EecCcHH
Q 029759          144 CQSGKRSMMAATDLLNAVSTH-A-NYPSKPL  172 (188)
Q Consensus       144 C~sG~~a~~a~~~L~~~G~~~-v-~l~GG~~  172 (188)
                      |.+|.||..++..|+..||++ + .+.||+.
T Consensus       339 C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~  369 (370)
T PRK05600        339 CASGIRSADFIEKYSHLGHELTLHNLPGGVN  369 (370)
T ss_pred             CCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence            999999999999999999996 6 7999975

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=99.48  E-value=1.5e-13  Score=120.26  Aligned_cols=79  Identities=15%  Similarity=0.189  Sum_probs=66.9

Q ss_pred             HHHHHHHhCCCEEEecCChhhHhcCCCCC----eEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHH
Q 029759           78 RVAHELLQAGHRYLDVRTPEEFSAGHATG----AINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMA  153 (188)
Q Consensus        78 ~~~~~~l~~~~~iIDvR~~~ef~~ghIpg----Ainip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a  153 (188)
                      .+..+.+..+.++||+|+++||..+||||    |+|+|+.            .+......+++++++|+||++|.+|..+
T Consensus       398 ~~~~~~~~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~------------~l~~~~~~l~~~~~iivyC~~G~rS~~a  465 (482)
T PRK01269        398 VETVSELPPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFY------------KLSTQFGDLDQSKTYLLYCDRGVMSRLQ  465 (482)
T ss_pred             hHHHHhcCCCCEEEECCCHHHHhcCCCCCCCceEEECCHH------------HHHHHHhhcCCCCeEEEECCCCHHHHHH
Confidence            33444555679999999999999999999    9999984            4555556678889999999999999999


Q ss_pred             HHHHHHCCCCce-Eec
Q 029759          154 ATDLLNAVSTHA-NYP  168 (188)
Q Consensus       154 ~~~L~~~G~~~v-~l~  168 (188)
                      +..|+.+||+++ .|.
T Consensus       466 a~~L~~~G~~nv~~y~  481 (482)
T PRK01269        466 ALYLREQGFSNVKVYR  481 (482)
T ss_pred             HHHHHHcCCccEEecC
Confidence            999999999998 454

>COG1054 Predicted sulfurtransferase [General function prediction only]

Probab=99.35  E-value=1e-12  Score=106.07  Aligned_cols=97  Identities=20%  Similarity=0.207  Sum_probs=79.3

Q ss_pred             cccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc--cCCCCcEEEEcCCChH
Q 029759           73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKR  149 (188)
Q Consensus        73 ~~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~--l~~~~~ivv~C~sG~~  149 (188)
                      ..++|+++.+++.+. .++||+|...||+.||..||++.+..+.        .+|..+....  .-++++|+.||.+|.|
T Consensus       113 ~yl~p~~wn~~l~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tF--------refP~~v~~~~~~~~~KkVvmyCTGGIR  184 (308)
T COG1054         113 TYLSPKDWNELLSDPDVVVIDTRNDYEVAIGHFEGAVEPDIETF--------REFPAWVEENLDLLKDKKVVMYCTGGIR  184 (308)
T ss_pred             CccCHHHHHHHhcCCCeEEEEcCcceeEeeeeecCccCCChhhh--------hhhHHHHHHHHHhccCCcEEEEcCCcee
Confidence            358999999999764 9999999999999999999999996411        1233333222  2356899999999999


Q ss_pred             HHHHHHHHHHCCCCce-EecCcHHhhhhC
Q 029759          150 SMMAATDLLNAVSTHA-NYPSKPLTWFLS  177 (188)
Q Consensus       150 a~~a~~~L~~~G~~~v-~l~GG~~~W~~~  177 (188)
                      ..++..+|...||++| .|+||+..+.++
T Consensus       185 CEKas~~m~~~GF~eVyhL~GGIl~Y~e~  213 (308)
T COG1054         185 CEKASAWMKENGFKEVYHLEGGILKYLED  213 (308)
T ss_pred             ehhhHHHHHHhcchhhhcccchHHHHhhh
Confidence            9999999999999999 699999888665

>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]

Probab=99.20  E-value=2.4e-11  Score=99.92  Aligned_cols=98  Identities=21%  Similarity=0.307  Sum_probs=78.1

Q ss_pred             ccCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccC-CCCcEEEEcCCChHH
Q 029759           74 SVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHDEIIVGCQSGKRS  150 (188)
Q Consensus        74 ~i~~~~~~~~l~~~--~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~-~~~~ivv~C~sG~~a  150 (188)
                      .++..+++++++++  .++||+|++.+|+..|+|+|+|||+.+......       ++....++ ..++|+++|..|+.|
T Consensus       318 Rvsv~d~k~il~~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~~~-------~~~~~~~~~~~~~I~ViCrrGNdS  390 (427)
T KOG2017|consen  318 RVSVTDYKRILDSGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSRSG-------KKLQGDLNTESKDIFVICRRGNDS  390 (427)
T ss_pred             cccHHHHHHHHhcCCCeEEEeccCcceEEEEecccccccchhhhhhhhh-------hhhcccccccCCCEEEEeCCCCch
Confidence            68999999999874  999999999999999999999999852221100       12222232 457899999999999


Q ss_pred             HHHHHHHHHCCCC-ce-EecCcHHhhhhCC
Q 029759          151 MMAATDLLNAVST-HA-NYPSKPLTWFLSN  178 (188)
Q Consensus       151 ~~a~~~L~~~G~~-~v-~l~GG~~~W~~~g  178 (188)
                      .++++.|++...+ ++ ...||+.+|...-
T Consensus       391 Q~Av~~Lre~~~~~~vrDvigGl~~w~~~v  420 (427)
T KOG2017|consen  391 QRAVRILREKFPDSSVRDVIGGLKAWAAKV  420 (427)
T ss_pred             HHHHHHHHhhCCchhhhhhhhHHHHHHHhc
Confidence            9999999987776 56 7999999998763

>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]

Probab=99.12  E-value=5.3e-10  Score=90.05  Aligned_cols=113  Identities=19%  Similarity=0.138  Sum_probs=89.9

Q ss_pred             ccCHHHHHHHHhC-CCEEEecC---------ChhhHhcCCCCCeEEcCccccc-----CCCCCCCHHHHHHHHhc--cCC
Q 029759           74 SVPVRVAHELLQA-GHRYLDVR---------TPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEVSTR--FRK  136 (188)
Q Consensus        74 ~i~~~~~~~~l~~-~~~iIDvR---------~~~ef~~ghIpgAinip~~~~~-----~~~~~~~~~~l~~~~~~--l~~  136 (188)
                      .++++.+.+++++ +.+|||+-         ...||..-|||||.++.++...     ...++..++.+++....  +++
T Consensus         6 iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lGi~n   85 (286)
T KOG1529|consen    6 IVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLGVDN   85 (286)
T ss_pred             ccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcCCCC
Confidence            4778888888865 48999986         2457778899999999875332     24556666666666555  578


Q ss_pred             CCcEEEEcC--CCh-HHHHHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          137 HDEIIVGCQ--SGK-RSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       137 ~~~ivv~C~--sG~-~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      ++.+|||.+  .|+ .|.+++|+++.+|+++| .|.||+..|...+.|+.+..+
T Consensus        86 ~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~  139 (286)
T KOG1529|consen   86 GDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKV  139 (286)
T ss_pred             CCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCccccccc
Confidence            889999998  665 47899999999999999 799999999999999998765

>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.09  E-value=2.2e-10  Score=93.91  Aligned_cols=93  Identities=23%  Similarity=0.273  Sum_probs=70.2

Q ss_pred             ccCHHHHHHHHhCC-------CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc---C---CCCcE
Q 029759           74 SVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF---R---KHDEI  140 (188)
Q Consensus        74 ~i~~~~~~~~l~~~-------~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l---~---~~~~i  140 (188)
                      .|++++++.+++..       ++|||+|-+.||..|||+||+||+..           +++...+-..   .   +...+
T Consensus       157 ~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~-----------~~~~~~f~~~~~~~~~~~~~i~  225 (325)
T KOG3772|consen  157 YISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSK-----------ELLQDFFLLKDGVPSGSKRVIL  225 (325)
T ss_pred             ccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccH-----------hhhhhhhccccccccccCceeE
Confidence            59999999998652       67999999999999999999999974           4444443221   1   23568


Q ss_pred             EEEcC-CChHHHHHHHHHHH------------CCCCce-EecCcHHhhhhC
Q 029759          141 IVGCQ-SGKRSMMAATDLLN------------AVSTHA-NYPSKPLTWFLS  177 (188)
Q Consensus       141 vv~C~-sG~~a~~a~~~L~~------------~G~~~v-~l~GG~~~W~~~  177 (188)
                      ||||. |..|.-.+|..|+.            +-|..+ +|+||+.+|...
T Consensus       226 IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~  276 (325)
T KOG3772|consen  226 IFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN  276 (325)
T ss_pred             EEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence            99997 56788888888873            234455 699999999765

>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]

Probab=98.18  E-value=5e-06  Score=68.20  Aligned_cols=92  Identities=18%  Similarity=0.248  Sum_probs=71.4

Q ss_pred             ccCHHHHHHHHhCC-------CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc--cCCCCcEEEEc
Q 029759           74 SVPVRVAHELLQAG-------HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGC  144 (188)
Q Consensus        74 ~i~~~~~~~~l~~~-------~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~--l~~~~~ivv~C  144 (188)
                      .|+++.++..++..       -+|||.|=+.||..|||-+|+||.-.           +.+...+-.  +..-.-+|+.|
T Consensus       243 RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~-----------~~l~~~F~hkplThp~aLifHC  311 (427)
T COG5105         243 RISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISST-----------KKLGLLFRHKPLTHPRALIFHC  311 (427)
T ss_pred             hcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchH-----------HHHHHHHHhccccCceeEEEEe
Confidence            59999999988753       57999999999999999999999864           566665542  23346789999


Q ss_pred             C-CChHHHHHHHHHHHCC------------CCce-EecCcHHhhhh
Q 029759          145 Q-SGKRSMMAATDLLNAV------------STHA-NYPSKPLTWFL  176 (188)
Q Consensus       145 ~-sG~~a~~a~~~L~~~G------------~~~v-~l~GG~~~W~~  176 (188)
                      . +..|+...|..|+..-            |..| +++||+...-+
T Consensus       312 EfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~  357 (427)
T COG5105         312 EFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS  357 (427)
T ss_pred             ecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence            8 4688999999987542            3556 68999987654

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=97.24  E-value=0.0031  Score=44.60  Aligned_cols=76  Identities=16%  Similarity=0.194  Sum_probs=41.8

Q ss_pred             ccCHHHHHHHHhCC-CEEEecCChhhHhcCCCC--------------CeEEcCcccccCCCCCCCHHHHHHHHhccC-CC
Q 029759           74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHAT--------------GAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KH  137 (188)
Q Consensus        74 ~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIp--------------gAinip~~~~~~~~~~~~~~~l~~~~~~l~-~~  137 (188)
                      .++++++..+.+.| -.||+.|+..|=.  +-|              .-+++|..     +.-.+.+.++.....+. ..
T Consensus        14 Q~~~~d~~~la~~GfktVInlRpd~E~~--~qp~~~~~~~~a~~~Gl~y~~iPv~-----~~~~~~~~v~~f~~~l~~~~   86 (110)
T PF04273_consen   14 QPSPEDLAQLAAQGFKTVINLRPDGEEP--GQPSSAEEAAAAEALGLQYVHIPVD-----GGAITEEDVEAFADALESLP   86 (110)
T ss_dssp             S--HHHHHHHHHCT--EEEE-S-TTSTT--T-T-HHCHHHHHHHCT-EEEE---------TTT--HHHHHHHHHHHHTTT
T ss_pred             CCCHHHHHHHHHCCCcEEEECCCCCCCC--CCCCHHHHHHHHHHcCCeEEEeecC-----CCCCCHHHHHHHHHHHHhCC
Confidence            47899999999988 8999999875421  111              24677764     22234445544444342 35


Q ss_pred             CcEEEEcCCChHHHHHHHH
Q 029759          138 DEIIVGCQSGKRSMMAATD  156 (188)
Q Consensus       138 ~~ivv~C~sG~~a~~a~~~  156 (188)
                      +||.+||.+|.||...+..
T Consensus        87 ~Pvl~hC~sG~Ra~~l~~l  105 (110)
T PF04273_consen   87 KPVLAHCRSGTRASALWAL  105 (110)
T ss_dssp             TSEEEE-SCSHHHHHHHHH
T ss_pred             CCEEEECCCChhHHHHHHH
Confidence            7999999999999765544

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>COG2603 Predicted ATPase [General function prediction only]

Probab=97.22  E-value=0.00054  Score=55.88  Aligned_cols=98  Identities=24%  Similarity=0.228  Sum_probs=63.4

Q ss_pred             HHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccC-------CCC-CC-C-------------HHHHHHHHhcc
Q 029759           77 VRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVG-------SGM-TK-N-------------LKFVEEVSTRF  134 (188)
Q Consensus        77 ~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~-------~~~-~~-~-------------~~~l~~~~~~l  134 (188)
                      .+....++.++..+||||.+-||..|+.|+++|+|.....+       .+. .. .             ..++-..+...
T Consensus         5 ~q~~~~~~~~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f   84 (334)
T COG2603           5 EQDYRALLLADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAF   84 (334)
T ss_pred             HHHHHHHHhcCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            34455566667899999999999999999999999753221       000 00 0             01111111111


Q ss_pred             CCCCcEEEEcCC-ChHHHHHHHHH-HHCCCCceEecCcHHhh
Q 029759          135 RKHDEIIVGCQS-GKRSMMAATDL-LNAVSTHANYPSKPLTW  174 (188)
Q Consensus       135 ~~~~~ivv~C~s-G~~a~~a~~~L-~~~G~~~v~l~GG~~~W  174 (188)
                      -.+.++-++|.. |.++...+.+| ...|++-.-..||..+.
T Consensus        85 ~e~~~~Gi~c~rgg~rsk~v~~~l~~~~g~~~~r~iGGeKal  126 (334)
T COG2603          85 QEENPVGILCARGGLRSKIVQKWLGYAAGIDYPRVIGGEKAL  126 (334)
T ss_pred             HHhCCcceeeccccchhHHHHHHHHHHHHhhhhhhhchHHHH
Confidence            234566666865 68999999999 77787766778887653

>TIGR01244 conserved hypothetical protein TIGR01244

Probab=97.02  E-value=0.0064  Score=44.43  Aligned_cols=85  Identities=19%  Similarity=0.166  Sum_probs=51.1

Q ss_pred             ccCHHHHHHHHhCC-CEEEecCChhhHhcCC----------CCC--eEEcCcccccCCCCCCCHHHHHHHHhcc-CCCCc
Q 029759           74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGH----------ATG--AINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDE  139 (188)
Q Consensus        74 ~i~~~~~~~~l~~~-~~iIDvR~~~ef~~gh----------Ipg--Ainip~~~~~~~~~~~~~~~l~~~~~~l-~~~~~  139 (188)
                      .++++++..+.+.+ -.|||.|+..|-....          -+|  -+++|+.    .+.+ +++.+......+ ..++|
T Consensus        14 qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~----~~~~-~~~~v~~f~~~~~~~~~p   88 (135)
T TIGR01244        14 QLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVT----AGDI-TPDDVETFRAAIGAAEGP   88 (135)
T ss_pred             CCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecC----CCCC-CHHHHHHHHHHHHhCCCC
Confidence            47888888877677 8999999976633211          123  3567753    1222 333333332223 23589


Q ss_pred             EEEEcCCChHHHHHHHH-HHHCCCC
Q 029759          140 IIVGCQSGKRSMMAATD-LLNAVST  163 (188)
Q Consensus       140 ivv~C~sG~~a~~a~~~-L~~~G~~  163 (188)
                      |+++|.+|.|+..++.. +...|.+
T Consensus        89 vL~HC~sG~Rt~~l~al~~~~~g~~  113 (135)
T TIGR01244        89 VLAYCRSGTRSSLLWGFRQAAEGVP  113 (135)
T ss_pred             EEEEcCCChHHHHHHHHHHHHcCCC
Confidence            99999999997766543 3334653

No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.

>PRK00142 putative rhodanese-related sulfurtransferase; Provisional

Probab=96.45  E-value=0.00038  Score=58.06  Aligned_cols=79  Identities=8%  Similarity=-0.016  Sum_probs=54.1

Q ss_pred             cCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc-cC--CCCcEEEEcCC--ChH
Q 029759           75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FR--KHDEIIVGCQS--GKR  149 (188)
Q Consensus        75 i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~-l~--~~~~ivv~C~s--G~~  149 (188)
                      -+++++.+.+.....++|+|....|+.+||||++|+|..            .+...... ++  ..+++++.-..  ...
T Consensus        16 ~~~~~~~~~l~~~~~~~d~rg~i~~a~egIngtis~~~~------------~~~~~~~~l~~~~~~~~i~l~~~~~~~~~   83 (314)
T PRK00142         16 EDPEAFRDEHLALCKSLGLKGRILVAEEGINGTVSGTIE------------QTEAYMAWLKADPRFADIRFKISEDDGHA   83 (314)
T ss_pred             CCHHHHHHHHHHHHHHcCCeeEEEEcCCCceEEEEecHH------------HHHHHHHHHhhCcCCCCceEEeccccCCC
Confidence            457888888877788999999999999999999999973            33333222 22  24666665443  222


Q ss_pred             H----HHHHHHHHHCCCC-ce
Q 029759          150 S----MMAATDLLNAVST-HA  165 (188)
Q Consensus       150 a----~~a~~~L~~~G~~-~v  165 (188)
                      .    .++...|..+|++ ++
T Consensus        84 f~~l~~~~~~eLv~~G~d~~v  104 (314)
T PRK00142         84 FPRLSVKVRKEIVALGLDDDI  104 (314)
T ss_pred             cccceeeeeeeeeecCCCCCC
Confidence            2    4566667778885 55

>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B

Probab=95.55  E-value=0.19  Score=37.66  Aligned_cols=100  Identities=17%  Similarity=0.249  Sum_probs=50.2

Q ss_pred             ccccccCCCcccCHHHHHHHHhCC-CEEEecCChhhHhcC---CCCCe--EEcCcccccCC------C------------
Q 029759           64 GNLEAVGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAG---HATGA--INVPYMYRVGS------G------------  119 (188)
Q Consensus        64 ~~~~~~~~~~~i~~~~~~~~l~~~-~~iIDvR~~~ef~~g---hIpgA--inip~~~~~~~------~------------  119 (188)
                      +.+-..+.+..+++++...+.+-+ ..|||.|++.|....   .++|.  +|+|.......      .            
T Consensus        19 g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (164)
T PF13350_consen   19 GRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAPDPLIDGVQYVHIPIFGDDASSPDKLAELLQSSADAPRGM   98 (164)
T ss_dssp             TSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS----TT-EEEE--SS-S-TTH----------HHHHHHHH
T ss_pred             CcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCCCCCcCCceeeeecccccccccccccccccccccchhhHH
Confidence            333334445568888888777656 899999999998753   34453  45664321111      0            


Q ss_pred             -------CCCCHHHHHHHHhcc-CCCCcEEEEcCCC--hHHHHHHHHHHHCCCC
Q 029759          120 -------MTKNLKFVEEVSTRF-RKHDEIIVGCQSG--KRSMMAATDLLNAVST  163 (188)
Q Consensus       120 -------~~~~~~~l~~~~~~l-~~~~~ivv~C~sG--~~a~~a~~~L~~~G~~  163 (188)
                             .....+.+.+.+..+ +...+++++|..|  -+...++..|..+|.+
T Consensus        99 ~~~Y~~~~~~~~~~~~~~~~~l~~~~~p~l~HC~aGKDRTG~~~alll~~lGV~  152 (164)
T PF13350_consen   99 LEFYREMLESYAEAYRKIFELLADAPGPVLFHCTAGKDRTGVVAALLLSLLGVP  152 (164)
T ss_dssp             HHHHHHGGGSTHHHHHHHHHHHH-TT--EEEE-SSSSSHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhccCCCcEEEECCCCCccHHHHHHHHHHHcCCC
Confidence                   011245555555553 3447999999988  3456677788888876

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=94.98  E-value=0.012  Score=52.28  Aligned_cols=89  Identities=17%  Similarity=0.119  Sum_probs=57.7

Q ss_pred             cccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHH-HHHHHHhcc-----CCCCcEEEEcCC
Q 029759           73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLK-FVEEVSTRF-----RKHDEIIVGCQS  146 (188)
Q Consensus        73 ~~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~-~l~~~~~~l-----~~~~~ivv~C~s  146 (188)
                      +.++++++..+  ....++|.|...||..+|+++++|+|+.         +.+ .+++ +..+     ..++.++++...
T Consensus       622 prmsAedl~~~--~~l~v~d~r~~~ef~r~~~s~s~nip~~---------~~ea~l~~-~~~l~~~~~~~~~~~v~~~~~  689 (725)
T KOG1093|consen  622 PRISAEDLIWL--KMLYVLDTRQESEFQREHFSDSINIPFN---------NHEADLDW-LRFLPGIVCSEGKKCVVVGKN  689 (725)
T ss_pred             ccccHHHHHHH--HHHHHHhHHHHHHHHHhhccccccCCcc---------chHHHHHH-hhcchHhHHhhCCeEEEeccc
Confidence            35777777655  3378999999999999999999999985         111 2222 1111     234555555444


Q ss_pred             ChHHHHHHHHHHHCCCCce-EecCcHHh
Q 029759          147 GKRSMMAATDLLNAVSTHA-NYPSKPLT  173 (188)
Q Consensus       147 G~~a~~a~~~L~~~G~~~v-~l~GG~~~  173 (188)
                      ...+.+....+..+-+..+ .+.+|++.
T Consensus       690 ~K~~~e~~~~~~~mk~p~~cil~~~~~~  717 (725)
T KOG1093|consen  690 DKHAAERLTELYVMKVPRICILHDGFNN  717 (725)
T ss_pred             hHHHHHHhhHHHHhcccHHHHHHHHHhh
Confidence            4455555555655556655 77888773

>PLN02727 NAD kinase

Probab=91.34  E-value=1.1  Score=42.49  Aligned_cols=71  Identities=15%  Similarity=0.173  Sum_probs=49.2

Q ss_pred             ccCHHHHHHHHhCC-CEEEecCChhhHhcCCC------------CCeEEcCcccccCCCCCCCHHHHHHHHhcc-C-CCC
Q 029759           74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHA------------TGAINVPYMYRVGSGMTKNLKFVEEVSTRF-R-KHD  138 (188)
Q Consensus        74 ~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghI------------pgAinip~~~~~~~~~~~~~~~l~~~~~~l-~-~~~  138 (188)
                      .++++++..+.+.| -.||+.|+..|- .+..            =.-+++|..    .......+.+.+....+ + -.+
T Consensus       268 Qpspe~la~LA~~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs----~~~apt~EqVe~fa~~l~~slpk  342 (986)
T PLN02727        268 QVTEEGLKWLLEKGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVE----VRTAPSAEQVEKFASLVSDSSKK  342 (986)
T ss_pred             CCCHHHHHHHHHCCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecC----CCCCCCHHHHHHHHHHHHhhcCC
Confidence            58999999888888 799999997761 1111            024677763    22334556777766666 3 369


Q ss_pred             cEEEEcCCChH
Q 029759          139 EIIVGCQSGKR  149 (188)
Q Consensus       139 ~ivv~C~sG~~  149 (188)
                      ||+++|.+|.+
T Consensus       343 PVLvHCKSGar  353 (986)
T PLN02727        343 PIYLHSKEGVW  353 (986)
T ss_pred             CEEEECCCCCc
Confidence            99999999974

>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.28  E-value=1.7  Score=31.21  Aligned_cols=79  Identities=18%  Similarity=0.126  Sum_probs=50.5

Q ss_pred             ccCHHHHHHHHhCC-CEEEecCChhhHh-----------cC--CCCCeEEcCcccccCCCCCCCHHHHHHHHhccC-CCC
Q 029759           74 SVPVRVAHELLQAG-HRYLDVRTPEEFS-----------AG--HATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-KHD  138 (188)
Q Consensus        74 ~i~~~~~~~~l~~~-~~iIDvR~~~ef~-----------~g--hIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~-~~~  138 (188)
                      .++++++.+.-..+ ..||-.|+..|=.           .+  -+. -.++|..     +.-..++.++.....++ .+.
T Consensus        15 Qi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~-----~~~iT~~dV~~f~~Al~eaeg   88 (130)
T COG3453          15 QISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVT-----GGGITEADVEAFQRALDEAEG   88 (130)
T ss_pred             CCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecC-----CCCCCHHHHHHHHHHHHHhCC
Confidence            57888998888888 7889999865421           11  121 3456652     33334445555444443 468


Q ss_pred             cEEEEcCCChHHHHHHHHHH
Q 029759          139 EIIVGCQSGKRSMMAATDLL  158 (188)
Q Consensus       139 ~ivv~C~sG~~a~~a~~~L~  158 (188)
                      |+.-||.+|.||...+..-+
T Consensus        89 PVlayCrsGtRs~~ly~~~~  108 (130)
T COG3453          89 PVLAYCRSGTRSLNLYGLGE  108 (130)
T ss_pred             CEEeeecCCchHHHHHHHHH
Confidence            99999999999987665433

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=90.89  E-value=0.59  Score=40.77  Aligned_cols=25  Identities=28%  Similarity=0.511  Sum_probs=23.4

Q ss_pred             CEEEecCChhhHhcCCCCCeEEcCc
Q 029759           88 HRYLDVRTPEEFSAGHATGAINVPY  112 (188)
Q Consensus        88 ~~iIDvR~~~ef~~ghIpgAinip~  112 (188)
                      +.|||.|+.++|.+||+..|.|+.-
T Consensus       327 FFiVDcRpaeqynaGHlstaFhlDc  351 (669)
T KOG3636|consen  327 FFIVDCRPAEQYNAGHLSTAFHLDC  351 (669)
T ss_pred             EEEEeccchhhcccccchhhhcccH
Confidence            8999999999999999999999874

>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases

Probab=90.12  E-value=1.4  Score=31.44  Aligned_cols=76  Identities=18%  Similarity=0.179  Sum_probs=40.1

Q ss_pred             hCC-CEEEecCChhhHhcCCCCC--eEEcCcccccCCCCCCCHHHHHHH---Hh-ccCCCCcEEEEcCCCh-HHHH--HH
Q 029759           85 QAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKFVEEV---ST-RFRKHDEIIVGCQSGK-RSMM--AA  154 (188)
Q Consensus        85 ~~~-~~iIDvR~~~ef~~ghIpg--Ainip~~~~~~~~~~~~~~~l~~~---~~-~l~~~~~ivv~C~sG~-~a~~--a~  154 (188)
                      +.+ ..|||+++..++..-+.+|  -.++|+.+...   ......+...   .. ....+++|+|+|..|. ||..  ++
T Consensus        25 ~~gi~~VI~l~~~~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~~Rs~~~~~~  101 (139)
T cd00127          25 KLGITHVLNVAKEVPNENLFLSDFNYLYVPILDLPS---QDISKYFDEAVDFIDDAREKGGKVLVHCLAGVSRSATLVIA  101 (139)
T ss_pred             HcCCCEEEEcccCCCCcccCCCCceEEEEEceeCCC---CChHHHHHHHHHHHHHHHhcCCcEEEECCCCCchhHHHHHH
Confidence            445 6899999988752222222  45666542221   1112222222   21 1335689999999985 6553  34


Q ss_pred             HHHHHCCCC
Q 029759          155 TDLLNAVST  163 (188)
Q Consensus       155 ~~L~~~G~~  163 (188)
                      ..+...|++
T Consensus       102 ~l~~~~~~~  110 (139)
T cd00127         102 YLMKTLGLS  110 (139)
T ss_pred             HHHHHcCCC
Confidence            445555543

Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.

>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase

Probab=89.80  E-value=0.79  Score=38.26  Aligned_cols=65  Identities=18%  Similarity=0.134  Sum_probs=42.7

Q ss_pred             ccCHHHHHHHHhC-CCEEEecCChhhHhc---CCCC-CeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCC
Q 029759           74 SVPVRVAHELLQA-GHRYLDVRTPEEFSA---GHAT-GAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG  147 (188)
Q Consensus        74 ~i~~~~~~~~l~~-~~~iIDvR~~~ef~~---ghIp-gAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG  147 (188)
                      .+...++.+.+.+ +..|||+|+..+|..   |||| |.  -|-..     .+  ...+...+..+++.++|++-|.+.
T Consensus       137 g~gKt~Ll~~L~~~~~~VvDlr~~a~hrGs~fG~~~~~~--qpsq~-----~f--e~~L~~~l~~~~~~~~i~~e~es~  206 (311)
T TIGR03167       137 GSGKTELLHALANAGAQVLDLEGLANHRGSSFGALGLGP--QPSQK-----RF--ENALAEALRRLDPGRPIFVEDESR  206 (311)
T ss_pred             CcCHHHHHHHHhcCCCeEEECCchHHhcCcccCCCCCCC--CCchH-----HH--HHHHHHHHHhCCCCceEEEEeCch
Confidence            4677788887765 489999999999998   8988 42  22210     00  123333333456678888888874

The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.

>smart00195 DSPc Dual specificity phosphatase, catalytic domain

Probab=88.84  E-value=1.8  Score=30.99  Aligned_cols=77  Identities=21%  Similarity=0.185  Sum_probs=41.0

Q ss_pred             HHhCC-CEEEecCChhhHhc-CCCCCeEEcCcccccCCCCCCCHHHHHHHHhc----cCCCCcEEEEcCCCh-HHHH--H
Q 029759           83 LLQAG-HRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSGK-RSMM--A  153 (188)
Q Consensus        83 ~l~~~-~~iIDvR~~~ef~~-ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~----l~~~~~ivv~C~sG~-~a~~--a  153 (188)
                      +.+.+ ..||+++...+... ..+ --+++|..+.   ......+.+......    ...+++|+|+|..|. ||..  +
T Consensus        22 l~~~gi~~Vi~l~~~~~~~~~~~~-~~~~ipi~D~---~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~   97 (138)
T smart00195       22 LKKLGITHVINVTNEVPNLNKKGF-TYLGVPILDN---TETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLII   97 (138)
T ss_pred             HHHcCCCEEEEccCCCCCCCCCCC-EEEEEECCCC---CCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHH
Confidence            33445 68999987654221 111 2456665421   111112333333222    346789999999984 6553  4


Q ss_pred             HHHHHHCCCC
Q 029759          154 ATDLLNAVST  163 (188)
Q Consensus       154 ~~~L~~~G~~  163 (188)
                      ++.+...|++
T Consensus        98 ~yl~~~~~~~  107 (138)
T smart00195       98 AYLMKYRNLS  107 (138)
T ss_pred             HHHHHHhCCC
Confidence            4556666764

>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]

Probab=87.18  E-value=1.3  Score=36.13  Aligned_cols=100  Identities=16%  Similarity=0.065  Sum_probs=55.8

Q ss_pred             ccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCeEEcCccccc----CCCCCCCHHHHHHH-----HhccCCCCcEEEE
Q 029759           74 SVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRV----GSGMTKNLKFVEEV-----STRFRKHDEIIVG  143 (188)
Q Consensus        74 ~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~----~~~~~~~~~~l~~~-----~~~l~~~~~ivv~  143 (188)
                      .++++++.+.+..+ .+++|.|+    ...||.+|+|+-+--.+    ..|.+.-...+...     ...--+...+|.|
T Consensus         5 ~~s~~wlnr~l~~~nllllDCRs----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~c~~v~vily   80 (343)
T KOG1717|consen    5 SKSVAWLNRQLELGNLLLLDCRS----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPARCGTVTVILY   80 (343)
T ss_pred             HHHHHHHHhhcccCceEEEecCC----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCccccccccccCCcceeeec
Confidence            35677788777654 99999999    56899999987653111    11111110000000     0000022457888


Q ss_pred             cCCC--hH-----HH---HHHHHHHHCCCCceEecCcHHhhhhC
Q 029759          144 CQSG--KR-----SM---MAATDLLNAVSTHANYPSKPLTWFLS  177 (188)
Q Consensus       144 C~sG--~~-----a~---~a~~~L~~~G~~~v~l~GG~~~W~~~  177 (188)
                      ..+.  +.     +.   .....++..|+...++.||+.....+
T Consensus        81 D~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~a~yL~ggF~~fq~e  124 (343)
T KOG1717|consen   81 DESSAEWEEETGAESVLGLLLKKLKDEGCSARYLSGGFSKFQAE  124 (343)
T ss_pred             ccccccccccchhhhHHHHHHHHHHhcCcchhhhhcccchhhhh
Confidence            7661  11     11   12244566788877999999876554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	188
1tq1_A	129	Solution Structure Of At5g66040, A Putative Protein		4e-32

>pdb|1TQ1|A Chain A, Solution Structure Of At5g66040, A Putative Protein From Arabidosis Thaliana Length = 129

Iteration: 1
 Score =  134 bits (336), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 73/90 (81%)
Query: 71  VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
           VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F+E+V
Sbjct: 16  VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQV 75
Query: 131 STRFRKHDEIIVGCQSGKRSMMAATDLLNA 160
           S+ F + D IIVGCQSG RS+ A TDLL+A
Sbjct: 76  SSHFGQSDNIIVGCQSGGRSIKATTDLLHA 105

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	188
1tq1_A	129	AT5G66040, senescence-associated family protein; C	2e-35
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	4e-16
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	9e-16
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	3e-15
2jtq_A	85	Phage shock protein E; solution structure rhodanes	6e-15
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	7e-15
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	3e-14
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	4e-14
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	1e-13
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	2e-13
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	6e-13
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	2e-12
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	2e-11
1vee_A	134	Proline-rich protein family; hypothetical protein,	3e-11
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	1e-10
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	1e-10
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	2e-10
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	4e-10
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	4e-09
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	1e-08
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	4e-08
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	4e-10
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	2e-09
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	2e-09
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	2e-09
3r2u_A	466	Metallo-beta-lactamase family protein; structural	5e-09
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	1e-08
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	1e-08
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	1e-08
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	8e-08
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	9e-08
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	1e-07
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	1e-06
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	2e-06
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	4e-06
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	6e-06
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	7e-06
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	8e-06
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	1e-05

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3 Length = 129

 Score =  119 bits (301), Expect = 2e-35
 Identities = 65/94 (69%), Positives = 74/94 (78%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF 126
           E   VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F
Sbjct: 12  EESRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDF 71

Query: 127 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA 160
           +E+VS+ F + D IIVGCQSG RS+ A TDLL+A
Sbjct: 72  LEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHA 105

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A Length = 106

 Score = 69.6 bits (171), Expect = 4e-16
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 11/70 (15%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           LDVR    ++ GH  GA+ +P               V+  S+   K  +I V     +++
Sbjct: 17  LDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQT 65

Query: 151 MMAATDLLNA 160
             A   L +A
Sbjct: 66  SQAVNLLRSA 75

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A Length = 141

 Score = 69.4 bits (170), Expect = 9e-16
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 17/87 (19%)

Query: 80  AHEL---LQAGHRY---LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
           AH L   L+ G      LDVR    ++ GH  GA+ +P               V+  S+ 
Sbjct: 4   AHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSS 52

Query: 134 FRKHDEIIVGCQSGKRSMMAATDLLNA 160
             K  +I V     +++  A   L +A
Sbjct: 53  LEKSRDIYVYGAGDEQTSQAVNLLRSA 79

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae} Length = 139

 Score = 67.9 bits (166), Expect = 3e-15
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 80  AHELLQAGHRY---LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FR 135
              ++         +DVR P E+S  H   +INVPY     +     L+F +++      
Sbjct: 30  MKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPD 89

Query: 136 KHDEIIVGCQSGKRSMMAATDLLNA 160
              E+I  C SGKR   A     + 
Sbjct: 90  SAKELIFYCASGKRGGEAQKVASSH 114

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A Length = 85

 Score = 65.7 bits (161), Expect = 6e-15
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 20/76 (26%)

Query: 87  GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-----KHDEII 141
              ++DVR PE++   H  GAIN+P               ++EV  R       K+D + 
Sbjct: 1   AEHWIDVRVPEQYQQEHVQGAINIP---------------LKEVKERIATAVPDKNDTVK 45

Query: 142 VGCQSGKRSMMAATDL 157
           V C +G++S  A   L
Sbjct: 46  VYCNAGRQSGQAKEIL 61

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus} Length = 94

 Score = 66.1 bits (162), Expect = 7e-15
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 17/83 (20%)

Query: 74  SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR 133
            V       LL+ G   +DVR  +  S      A  VP               +E++   
Sbjct: 3   KVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAEWVP---------------LEKIQKG 47

Query: 134 FRK--HDEIIVGCQSGKRSMMAA 154
                   +++ C+ G  S +AA
Sbjct: 48  EHGLPRRPLLLVCEKGLLSQVAA 70

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A Length = 108

 Score = 64.6 bits (158), Expect = 3e-14
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 13/88 (14%)

Query: 74  SVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST 132
            + V  AH+ LQ     L D+R P+ F+ GHA  A ++               F+ +   
Sbjct: 6   CINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLT--------NDTLGAFMRDN-- 55

Query: 133 RFRKHDEIIVGCQSGKRSMMAATDLLNA 160
                  ++V C  G  S  AA  LL  
Sbjct: 56  --DFDTPVMVMCYHGNSSKGAAQYLLQQ 81

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori} Length = 110

 Score = 64.6 bits (158), Expect = 4e-14
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           +DVR  +E+   H   A  +         +    K  + +S    K  ++++ C++G+R+
Sbjct: 20  VDVRELDEYEELHLPNATLIS--------VNDQEKLADFLS--QHKDKKVLLHCRAGRRA 69

Query: 151 MMAATDLLNA 160
           + AA  +   
Sbjct: 70  LDAAKSMHEL 79

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} Length = 100

 Score = 62.2 bits (152), Expect = 2e-13
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 14/83 (16%)

Query: 74  SVPVRVAHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 131
           S+ V    E +   +    +DVRT +E + G   GA  +P M  +   +           
Sbjct: 3   SITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIP-MNSIPDNLNY--------- 52

Query: 132 TRFRKHDEIIVGCQSGKRSMMAA 154
             F  ++   + C++G RS    
Sbjct: 53  --FNDNETYYIICKAGGRSAQVV 73

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} Length = 108

 Score = 61.1 bits (149), Expect = 6e-13
 Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 14/77 (18%)

Query: 80  AHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKH 137
           A +L +    Y  LDVR P E   G    +IN+P            +  + E      + 
Sbjct: 8   AADLYENIKAYTVLDVREPFELIFGSIANSINIP------------ISELREKWKILERD 55

Query: 138 DEIIVGCQSGKRSMMAA 154
            +  V C  G RS  A 
Sbjct: 56  KKYAVICAHGNRSAAAV 72

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis} Length = 148

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 11/92 (11%)

Query: 80  AHELLQAG--HRYLDVRTPEEFSAGHATGAINVP----YMYRVGSGMTKNLKFVEEVSTR 133
           A E+L        +DVR   E+         ++     Y+    S  T N  F+ E+  R
Sbjct: 12  AWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGTHNDNFLAELRDR 71

Query: 134 F-----RKHDEIIVGCQSGKRSMMAATDLLNA 160
                 +    +I  C+SG RS+ AA     A
Sbjct: 72  IPADADQHERPVIFLCRSGNRSIGAAEVATEA 103

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens} Length = 127

 Score = 57.8 bits (140), Expect = 2e-11
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 77  VRVAHELLQAGHRY--LDVRTPEEFSAGHATGAINVPY-----MYRVGSGMTKNLKFVEE 129
           V     LL +G  +  LDVR   E        A+++P             + K   + E+
Sbjct: 5   VTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLKEAIWEEK 64

Query: 130 VSTRFRKHDEIIVGCQSGKRSMMAATDLLNA 160
             T+      I V C+ G  S  A   L + 
Sbjct: 65  QGTQEGAAVPIYVICKLGNDSQKAVKILQSL 95

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A Length = 134

 Score = 57.3 bits (138), Expect = 3e-11
 Identities = 12/93 (12%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 73  TSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPY-MYRVGSGMTKNLKFVEE 129
           +S   + A+  L      + LD+R   +F    +     +                F+++
Sbjct: 5   SSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGEDKPGFLKK 64

Query: 130 VSTRF--RKHDEIIVGCQSGKRSMMAATDLLNA 160
           +S +F   ++  + +  +    S + A  +   
Sbjct: 65  LSLKFKDPENTTLYILDKFDGNSELVAELVALN 97

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A Length = 144

 Score = 55.9 bits (135), Expect = 1e-10
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 13/69 (18%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ--SGK 148
           +DVR  E +   H   AI++P             K  E+ + R  K   II  C   +  
Sbjct: 37  VDVRDAEAYKECHIPTAISIPGN-----------KINEDTTKRLSKEKVIITYCWGPACN 85

Query: 149 RSMMAATDL 157
            +  AA   
Sbjct: 86  GATKAAAKF 94

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp} Length = 474

 Score = 58.5 bits (141), Expect = 1e-10
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF 126
           +        P  V   L Q G   LDVR  +E++ GH   A ++P            L  
Sbjct: 369 DVASYANVSPDEVRGALAQQGLWLLDVRNVDEWAGGHLPQAHHIP------------LSK 416

Query: 127 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNA 160
           +        +   + V C++G RS +AA+ L   
Sbjct: 417 LAAHIHDVPRDGSVCVYCRTGGRSAIAASLLRAH 450

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A Length = 124

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 18/89 (20%), Positives = 33/89 (37%), Gaps = 22/89 (24%)

Query: 79  VAHELLQAGHRY--LDVRT-PEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
           V  ++  A  +Y  LDVR  P +       GAI +P                ++++TR  
Sbjct: 22  VLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMP---------------AKDLATRIG 66

Query: 136 ---KHDEIIVGCQSGKRSMMA-ATDLLNA 160
                   +V   +G  ++   A  +L +
Sbjct: 67  ELDPAKTYVVYDWTGGTTLGKTALLVLLS 95

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 57.0 bits (137), Expect = 4e-10
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 12/85 (14%)

Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
           P  +A  L + G R LD      ++  H  GA  V                +++   R  
Sbjct: 381 PTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVL------------RSQLKQALERLG 428

Query: 136 KHDEIIVGCQSGKRSMMAATDLLNA 160
             +  ++ C S   +  A  ++   
Sbjct: 429 TAERYVLTCGSSLLARFAVAEVQAL 453

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 54.0 bits (129), Expect = 4e-09
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 17/91 (18%)

Query: 73  TSVPVRVAHEL---LQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFV 127
           + + VR  H++   L A      LDVR  + F+  H   A N+P             +  
Sbjct: 4   SQIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLS-----------RLE 52

Query: 128 EEVSTRF-RKHDEIIVGCQSGKRSMMAATDL 157
            E+  R  R+   I V       + +AA  L
Sbjct: 53  LEIHARVPRRDTPITVYDDGEGLAPVAAQRL 83

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 52.8 bits (126), Expect = 1e-08
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 10/73 (13%)

Query: 85  QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGC 144
                 LDVRTPEE+ AGH  G+ + P     G  + +             +   +++  
Sbjct: 280 DRTTYLLDVRTPEEYEAGHLPGSRSTP-----GGQLVQETD-----HVASVRGARLVLVD 329

Query: 145 QSGKRSMMAATDL 157
             G R+ M+A+ L
Sbjct: 330 DDGVRANMSASWL 342

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2 Length = 539

 Score = 51.3 bits (122), Expect = 4e-08
 Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 85  QAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGC 144
           +A    LD R  +E+      G I+VP          + +  V E++        +IV C
Sbjct: 144 RAEAVILDARRFDEYQTMSIPGGISVPG--------AELVLRVAELAP--DPRTRVIVNC 193

Query: 145 QSGKRSMMAATDLLNA 160
               RS++    LLNA
Sbjct: 194 AGRTRSIIGTQSLLNA 209

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile} Length = 134

 Score = 54.3 bits (130), Expect = 4e-10
 Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 23/105 (21%)

Query: 76  PVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMY-----RVGSGMTKN------- 123
            +++   L      ++DVRT  E+   H   AIN+P         VG+            
Sbjct: 6   VIKIEKALKLDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQ 65

Query: 124 --LKFVEEVSTRFRK---------HDEIIVGCQSGKRSMMAATDL 157
               +V                   + +I   + G RS      L
Sbjct: 66  KGFDYVSYKLKDIYLQAAELALNYDNIVIYCARGGMRSGSIVNLL 110

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 18/94 (19%)

Query: 70  GVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEE 129
           G   +V       +++ G   +DVR P E   G   G+IN+P               ++E
Sbjct: 486 GFVDTVQWHEIDRIVENGGYLIDVREPNELKQGMIKGSINIP---------------LDE 530

Query: 130 VSTRFR---KHDEIIVGCQSGKRSMMAATDLLNA 160
           +  R        +I + CQ G R  +AA  L+  
Sbjct: 531 LRDRLEEVPVDKDIYITCQLGMRGYVAARMLMEK 564

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1 Length = 152

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 10/106 (9%)

Query: 73  TSVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS 131
           + +       L +  +  + DVR  E    GH  G+++        SG   +   +  + 
Sbjct: 28  SYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYA------SGSFDDK--ISHLV 79

Query: 132 TRFRKHDEIIVGC-QSGKRSMMAATDLLNAVSTHANYPSKPLTWFL 176
              +  D ++     S  R    A  L+N +              L
Sbjct: 80  QNVKDKDTLVFHSALSQVRGPTCARRLVNYLDEKKEDTGIKNIMIL 125

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1 Length = 161

 Score = 53.1 bits (127), Expect = 2e-09
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 149
           +D R P E+  GH  GA+N+           ++    + +     K   ++  C+ S +R
Sbjct: 48  IDCRYPYEYEGGHIKGAVNLHM-----EEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSER 102

Query: 150 SMMAATDLLNAVSTHANYPS 169
                  +         YP 
Sbjct: 103 GPRMCRYVRERDRLGNEYPK 122

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus} Length = 466

 Score = 53.9 bits (129), Expect = 5e-09
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 12/70 (17%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           LDVR   E++ GH + A++VP               + E    F K+D I V CQSG RS
Sbjct: 391 LDVRNDNEWNNGHLSQAVHVP------------HGKLLETDLPFNKNDVIYVHCQSGIRS 438

Query: 151 MMAATDLLNA 160
            +A   L + 
Sbjct: 439 SIAIGILEHK 448

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris} Length = 139

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 18/92 (19%)

Query: 75  VPVRVAHELLQAGHRY---LDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEV 130
           +    A  L ++G      +D+R P E    G   G+ +         GM   L+F  + 
Sbjct: 24  LTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTR------GM---LEFWIDP 74

Query: 131 STRFRKHD-----EIIVGCQSGKRSMMAATDL 157
            + + K       + +  C  G RS +AA   
Sbjct: 75  QSPYAKPIFQEDKKFVFYCAGGLRSALAAKTA 106

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A Length = 211

 Score = 51.6 bits (123), Expect = 1e-08
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 149
           +D R P E+  GH   A+N+P      S + K+      +     K   +I  C+ S +R
Sbjct: 69  VDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCSLD----KRVILIFHCEFSSER 124

Query: 150 SMMAATDLLNAVSTHANYPSK 170
                  +        +YPS 
Sbjct: 125 GPRMCRFIRERDRAVNDYPSL 145

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 52.2 bits (126), Expect = 1e-08
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 20/86 (23%)

Query: 80  AHELLQAGHRY--LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR-- 135
             ++         LDVR P E   G   GA+N+P               V+E+  R    
Sbjct: 477 FDQIDNLSEDQLLLDVRNPGELQNGGLEGAVNIP---------------VDELRDRMHEL 521

Query: 136 -KHDEIIVGCQSGKRSMMAATDLLNA 160
            K  EII+  Q G R  +A   L+N 
Sbjct: 522 PKDKEIIIFSQVGLRGNVAYRQLVNN 547

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A Length = 175

 Score = 48.8 bits (116), Expect = 8e-08
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 149
           +D R P E+  GH   A+N+P      S + K+            K   +I   + S +R
Sbjct: 49  VDCRYPYEYEGGHIKTAVNLPLERDAESFLLKS----PIAPCSLDKRVILIFHSEFSSER 104

Query: 150 SMMAATDLLNAVSTHANYPS 169
                  +        +YPS
Sbjct: 105 GPRMCRFIRERDRAVNDYPS 124

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3 Length = 137

 Score = 48.1 bits (115), Expect = 9e-08
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 15/93 (16%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRY--LDVRTPEEFSAGH---ATGAINVPYMYRVGSGMT 121
            A      +  + A++LLQ       +DVR P+E  A          ++        G  
Sbjct: 17  AAKADMVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSR------GK- 69

Query: 122 KNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAA 154
             L+ +    +       ++V C++  R+ +A 
Sbjct: 70  --LEPLLA-KSGLDPEKPVVVFCKTAARAALAG 99

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens} Length = 216

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 149
           +D R P E+  GH  GA+N+         +         V    +K   I+  C+ S +R
Sbjct: 82  IDCRYPYEYLGGHIQGALNLY----SQEELFNFFLKKPIVPLDTQKRIIIVFHCEFSSER 137

Query: 150 SMMAATDLLNAVSTHANYPS 169
                  L     +   YP+
Sbjct: 138 GPRMCRCLREEDRSLNQYPA 157

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X Length = 271

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 15/85 (17%)

Query: 79  VAHELLQAGHRYLDVRTPEEFS--------AGHATGAINVPYMYRVGSGMTKNLKFVEEV 130
           +   L  A     D R+P+E+          GH  GA+N  +   +       L+   ++
Sbjct: 154 LLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRA--LRIRTDI 211

Query: 131 STRF-----RKHDEIIVGCQSGKRS 150
           + R          EI+  CQ+  RS
Sbjct: 212 AGRLEELGITPDKEIVTHCQTHHRS 236

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A* Length = 169

 Score = 45.1 bits (106), Expect = 2e-06
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 91  LDVRTPEEFSAGHATGAINVPY--MYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGC-QSG 147
           +DVR   ++  GH     +  Y  + +    + +    + E     R    +I  C  S 
Sbjct: 57  VDVR-GSDYMGGHIKDGWHYAYSRLKQDPEYLRELKHRLLEKQADGRGALNVIFHCMLSQ 115

Query: 148 KRSMMAATDLLNA 160
           +R   AA  LL +
Sbjct: 116 QRGPSAAMLLLRS 128

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A Length = 318

 Score = 44.9 bits (107), Expect = 4e-06
 Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 31/132 (23%)

Query: 63  RGNLEAVGVPTSVPVRVAHELLQA--GHRYLDVRTPEEFS----------------AGHA 104
                 V    +       ++L        +DVR+PEE++                AGH 
Sbjct: 166 CTGYPVVQRNDAPIRAFRDDVLAILGAQPLIDVRSPEEYTGKRTHMPDYPEEGALRAGHI 225

Query: 105 TGAINVPYMYRVGSGMTKN--LKFVEEVSTRFR---KHDEIIVGCQSGKRS---MMAATD 156
             A+++P+    G    ++   +  EE+   +      D+ +V C+ G+RS       T 
Sbjct: 226 PTAVHIPW----GKAADESGRFRSREELERLYDFINPDDQTVVYCRIGERSSHTWFVLTH 281

Query: 157 LLNAVSTHANYP 168
           LL   +   NY 
Sbjct: 282 LL-GKADVRNYD 292

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} Length = 152

 Score = 43.1 bits (101), Expect = 6e-06
 Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 12/86 (13%)

Query: 81  HELLQAGHRY-----LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFR 135
            ELL           +D R   +   G    +IN+P +        K  K + E      
Sbjct: 13  VELLDNPDSLVKAAVIDCR-DSDRDCGFIVNSINMPTISCTEEMYEKLAKTLFE-----E 66

Query: 136 KHDEIIVGC-QSGKRSMMAATDLLNA 160
           K +  +  C QS  R+   A     A
Sbjct: 67  KKELAVFHCAQSLVRAPKGANRFALA 92

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2 Length = 285

 Score = 44.1 bits (105), Expect = 7e-06
 Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 37/138 (26%)

Query: 63  RGNLEAVGVPTSVPV------RVAHELLQAGHRYLDVRTPEEFS---------------- 100
            G  E      S+            ++ +     +DVR+P+E+                 
Sbjct: 134 PGRYEVPYRDESIRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALR 193

Query: 101 AGHATGAINVPYMYRVGSGMTKNLKF--VEEVSTRFR-----KHDEIIVGCQSGKRS--- 150
           AGH  GA N+P+       +  +  F   EE+   +      K  +I+V C+  +RS   
Sbjct: 194 AGHIPGAKNIPW----AKAVNPDGTFKSAEELRALYEPLGITKDKDIVVYCRIAERSSHS 249

Query: 151 MMAATDLLNAVSTHANYP 168
                 LL       NY 
Sbjct: 250 WFVLKYLLG-YPHVKNYD 266

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A Length = 277

 Score = 43.7 bits (104), Expect = 8e-06
 Identities = 28/104 (26%), Positives = 40/104 (38%), Gaps = 31/104 (29%)

Query: 91  LDVRTPEEFS----------------AGHATGAINVPYMYRVGSGMTKN--LKFVEEVST 132
           +DVR+P+EFS                 GH  GAINVP+         ++   K  EE++ 
Sbjct: 161 IDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPW----SRAANEDGTFKSDEELAK 216

Query: 133 RFRKH-----DEIIVGCQSGKRS---MMAATDLLNAVSTHANYP 168
            +         E I  C+ G+RS        +LL       NY 
Sbjct: 217 LYADAGLDNSKETIAYCRIGERSSHTWFVLRELLG-HQNVKNYD 259

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A Length = 230

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 23/100 (23%), Positives = 30/100 (30%), Gaps = 33/100 (33%)

Query: 72  PTSVPVRVAHELL------QAGHRYLDVRTPEEFS----------AGHATGAINVPYMYR 115
            T V  ++  + L            LDVR+PEEF            G   G+ N P    
Sbjct: 110 RTEVVAKLRRDWLLTADEAARHPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLE-- 167

Query: 116 VGSGMTKNLKFVEEVSTRFR-----KHDEIIVGCQSGKRS 150
                     F+                E+ V C SG RS
Sbjct: 168 ---------LFLSP-EGLLERLGLQPGQEVGVYCHSGARS 197

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
3iwh_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.95
1tq1_A	129	AT5G66040, senescence-associated family protein; C	99.95
3gk5_A	108	Uncharacterized rhodanese-related protein TVG08686	99.94
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.94
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.94
3foj_A	100	Uncharacterized protein; protein SSP1007, structur	99.94
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.93
3eme_A	103	Rhodanese-like domain protein; alpha-beta-alpha sa	99.93
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.93
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.93
1gmx_A	108	GLPE protein; transferase, rhodanese, sulfurtransf	99.93
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.93
3hix_A	106	ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q	99.93
3ilm_A	141	ALR3790 protein; rhodanese-like, NSR437H, NESG, st	99.92
3d1p_A	139	Putative thiosulfate sulfurtransferase YOR285W; at	99.92
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.92
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.92
1qxn_A	137	SUD, sulfide dehydrogenase; polysulfide-sulfur tra	99.92
2hhg_A	139	Hypothetical protein RPA3614; MCSG, structural gen	99.92
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.91
1wv9_A	94	Rhodanese homolog TT1651; CDC25, phosphatase, sulf	99.91
3flh_A	124	Uncharacterized protein LP_1913; alpha-beta protei	99.91
3nhv_A	144	BH2092 protein; alpha-beta protein, structural gen	99.91
2k0z_A	110	Uncharacterized protein HP1203; A/B domain, struct	99.9
2fsx_A	148	RV0390, COG0607: rhodanese-related sulfurtransfera	99.89
2wlr_A	423	Putative thiosulfate sulfurtransferase YNJE; rhoda	99.88
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.88
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.88
2jtq_A	85	Phage shock protein E; solution structure rhodanes	99.88
1e0c_A	271	Rhodanese, sulfurtransferase; sulfur metabolism, t	99.87
1t3k_A	152	Arath CDC25, dual-specificity tyrosine phosphatase	99.87
3hzu_A	318	Thiosulfate sulfurtransferase SSEA; niaid, ssgcid,	99.87
3g5j_A	134	Putative ATP/GTP binding protein; N-terminal domai	99.87
1urh_A	280	3-mercaptopyruvate sulfurtransferase; rhodanese; 2	99.86
1vee_A	134	Proline-rich protein family; hypothetical protein,	99.86
3i2v_A	127	Adenylyltransferase and sulfurtransferase MOCS3; r	99.86
3aay_A	277	Putative thiosulfate sulfurtransferase; sulfurtran	99.85
1c25_A	161	CDC25A; hydrolase, cell cycle phosphatase,dual spe	99.84
1rhs_A	296	Sulfur-substituted rhodanese; transferase, sulfurt	99.84
1uar_A	285	Rhodanese; sulfurtransferase, riken structural gen	99.84
1qb0_A	211	Protein (M-phase inducer phosphatase 2 (CDC25B));	99.83
3olh_A	302	MST, 3-mercaptopyruvate sulfurtransferase; structu	99.83
2a2k_A	175	M-phase inducer phosphatase 2; dual specificity, s	99.83
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.83
2vsw_A	153	Dual specificity protein phosphatase 16; hydrolase	99.83
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.82
2ouc_A	142	Dual specificity protein phosphatase 10; rhodanese	99.81
1okg_A	373	Possible 3-mercaptopyruvate sulfurtransferase; rho	99.81
2j6p_A	152	SB(V)-AS(V) reductase; arsenate reductase, antimon	99.81
3op3_A	216	M-phase inducer phosphatase 3; structural genomics	99.81
4f67_A	265	UPF0176 protein LPG2838; structural genomics, PSI-	99.81
1yt8_A	539	Thiosulfate sulfurtransferase; rhodanase domains,	99.8
1hzm_A	154	Dual specificity protein phosphatase 6; hydrolase;	99.79
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	99.78
3f4a_A	169	Uncharacterized protein YGR203W; protein phosphata	99.77
3tg1_B	158	Dual specificity protein phosphatase 10; kinase/rh	99.76
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.76
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	99.74
2eg4_A	230	Probable thiosulfate sulfurtransferase; structural	99.73
3tp9_A	474	Beta-lactamase and rhodanese domain protein; struc	99.7
1whb_A	157	KIAA0055; deubiqutinating enzyme, UBPY, structural	99.68
2gwf_A	157	Ubiquitin carboxyl-terminal hydrolase 8; protein-p	99.67
3utn_X	327	Thiosulfate sulfurtransferase TUM1; rhodanese-like	99.66
3r2u_A	466	Metallo-beta-lactamase family protein; structural	99.4
2f46_A	156	Hypothetical protein; structural genomics, joint c	98.18
4erc_A	150	Dual specificity protein phosphatase 23; alpha bet	93.89
1xri_A	151	AT1G05000; structural genomics, protein structure	92.53
2img_A	151	Dual specificity protein phosphatase 23; DUSP23, V	91.67
1ywf_A	296	Phosphotyrosine protein phosphatase PTPB; four str	91.43
1v8c_A	168	MOAD related protein; riken structural genomics/pr	91.31
2nt2_A	145	Protein phosphatase slingshot homolog 2; alpha/bet	88.79
2hcm_A	164	Dual specificity protein phosphatase; structural g	88.24
1fpz_A	212	Cyclin-dependent kinase inhibitor 3; alpha-beta sa	87.79
1yz4_A	160	DUSP15, dual specificity phosphatase-like 15 isofo	86.99
3s4o_A	167	Protein tyrosine phosphatase-like protein; structu	86.92
3ezz_A	144	Dual specificity protein phosphatase 4; alpha/beta	86.79
3rz2_A	189	Protein tyrosine phosphatase type IVA 1; tyrosine	86.32
1wrm_A	165	Dual specificity phosphatase 22; DSP, JNK, hydrola	86.05
2r0b_A	154	Serine/threonine/tyrosine-interacting protein; str	85.49
2esb_A	188	Dual specificity protein phosphatase 18; alpha/bet	84.94
3rgo_A	157	Protein-tyrosine phosphatase mitochondrial 1; phos	84.85
2wgp_A	190	Dual specificity protein phosphatase 14; MKP6, DUS	83.09
2e0t_A	151	Dual specificity phosphatase 26; conserved hypothe	82.07
1zzw_A	149	Dual specificity protein phosphatase 10; MKP, PTP,	81.33
3s4e_A	144	Dual specificity protein phosphatase 19; PTP, prot	80.96
3f81_A	183	Dual specificity protein phosphatase 3; hydrolase,	80.83

>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A

Probab=99.95  E-value=1e-28  Score=172.58  Aligned_cols=98  Identities=20%  Similarity=0.201  Sum_probs=88.9

Q ss_pred             ccCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHH
Q 029759           74 SVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  151 (188)
Q Consensus        74 ~i~~~~~~~~l~~~--~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~  151 (188)
                      .|+++++++++.++  ++|||||+++||..||||||+|+|+.            .+...+..++++++||+||.+|.||.
T Consensus         3 ~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~ivv~C~~G~rS~   70 (103)
T 3iwh_A            3 SITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMD------------TIPDNLNSFNKNEIYYIVCAGGVRSA   70 (103)
T ss_dssp             EECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGG------------GGGGCGGGCCTTSEEEEECSSSSHHH
T ss_pred             CcCHHHHHHHHhCCCCeEEEECCChhHHhcCccCCcccCccc------------chhhhhhhhcCCCeEEEECCCCHHHH
Confidence            58999999988654  89999999999999999999999984            44555666889999999999999999


Q ss_pred             HHHHHHHHCCCCceEecCcHHhhhhCCCcccc
Q 029759          152 MAATDLLNAVSTHANYPSKPLTWFLSNQLLTE  183 (188)
Q Consensus       152 ~a~~~L~~~G~~~v~l~GG~~~W~~~g~p~~~  183 (188)
                      .++..|+..||+++++.||+.+|..+|+|+++
T Consensus        71 ~aa~~L~~~G~~~~~l~GG~~~W~~~g~pves  102 (103)
T 3iwh_A           71 KVVEYLEANGIDAVNVEGGMHAWGDEGLEIKS  102 (103)
T ss_dssp             HHHHHHHTTTCEEEEETTHHHHHCSSSCBCCC
T ss_pred             HHHHHHHHcCCCEEEecChHHHHHHCCCccee
Confidence            99999999999988999999999999999985

>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3

Probab=99.95  E-value=1.4e-27  Score=173.01  Aligned_cols=112  Identities=59%  Similarity=0.859  Sum_probs=99.9

Q ss_pred             CCcccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHH
Q 029759           71 VPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (188)
Q Consensus        71 ~~~~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a  150 (188)
                      ....|+++++.++++++++|||||+++||..||||||+|+|+......+.+.+.+++++....++++++||+||.+|.+|
T Consensus        16 ~~~~is~~e~~~~l~~~~~lIDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyC~~G~rs   95 (129)
T 1tq1_A           16 VPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGGRS   95 (129)
T ss_dssp             CCEEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCSHH
T ss_pred             CCcccCHHHHHHHhcCCCEEEECCCHHHHhcCCCCCcEECcHhhcccccccCCHHHHHHHHhhCCCCCeEEEECCCCcHH
Confidence            34479999999998867999999999999999999999999865555666667788888877788899999999999999


Q ss_pred             HHHHHHHHHCCCCce-EecCcHHhhhhCCCccc
Q 029759          151 MMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLT  182 (188)
Q Consensus       151 ~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~  182 (188)
                      ..+++.|..+||+++ +|.|||.+|..+|+|++
T Consensus        96 ~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~  128 (129)
T 1tq1_A           96 IKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK  128 (129)
T ss_dssp             HHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC
T ss_pred             HHHHHHHHHcCCCCeEEeCCcHHHHHhCCCCCC
Confidence            999999999999988 79999999999999986

>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}

Probab=99.94  E-value=1.6e-26  Score=162.59  Aligned_cols=100  Identities=23%  Similarity=0.247  Sum_probs=91.0

Q ss_pred             cccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHH
Q 029759           73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  152 (188)
Q Consensus        73 ~~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~  152 (188)
                      ..|+++++.+++++ ++|||+|+++||..||||||+|+|+            +.+...+..++++++||+||.+|.+|..
T Consensus         4 ~~is~~el~~~l~~-~~iiDvR~~~e~~~ghIpgA~~ip~------------~~l~~~~~~l~~~~~ivvyC~~G~rs~~   70 (108)
T 3gk5_A            4 RSINAADLYENIKA-YTVLDVREPFELIFGSIANSINIPI------------SELREKWKILERDKKYAVICAHGNRSAA   70 (108)
T ss_dssp             CEECHHHHHHTTTT-CEEEECSCHHHHTTCBCTTCEECCH------------HHHHHHGGGSCTTSCEEEECSSSHHHHH
T ss_pred             cEeCHHHHHHHHcC-CEEEECCCHHHHhcCcCCCCEEcCH------------HHHHHHHHhCCCCCeEEEEcCCCcHHHH
Confidence            36899999999888 9999999999999999999999998            4677777788899999999999999999


Q ss_pred             HHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          153 AATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       153 a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      +++.|+.+|| ++ +|.||+.+|..+++|+++...
T Consensus        71 aa~~L~~~G~-~v~~l~GG~~~W~~~~~~~~~~~~  104 (108)
T 3gk5_A           71 AVEFLSQLGL-NIVDVEGGIQSWIEEGYPVVLEHH  104 (108)
T ss_dssp             HHHHHHTTTC-CEEEETTHHHHHHHTTCCCBCC--
T ss_pred             HHHHHHHcCC-CEEEEcCcHHHHHHcCCCCCCCCC
Confidence            9999999999 88 799999999999999988654

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.94  E-value=3.6e-26  Score=185.19  Aligned_cols=164  Identities=20%  Similarity=0.206  Sum_probs=125.4

Q ss_pred             CccCCCchhh-hhcccccccCCceeEEeecCCCcc-----------cccccccccccc---cccCCC-------------
Q 029759           21 PVLCPHGNNR-RGLLSLTVDQQRCDNIGFISSKIL-----------SFCPKASLRGNL---EAVGVP-------------   72 (188)
Q Consensus        21 ~~~~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~~~~~~~~~---~~~~~~-------------   72 (188)
                      +.+.|+.+.| +++..+|++..+.+|+|+..+...           ++.++..++|++   ...+.+             
T Consensus        65 ~~~~~~~~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~  144 (280)
T 1urh_A           65 PHMLPRPETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGAVELPEGEF  144 (280)
T ss_dssp             SSCCCCHHHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBBSCCCCCCCCC
T ss_pred             CCCCCCHHHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHHCCCcccCCCCCCCCCcc
Confidence            4566777888 777777888899999998776541           677777777765   111211             


Q ss_pred             -------cccCHHHHHHHHhC-CCEEEecCChhhH-----------hcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc
Q 029759           73 -------TSVPVRVAHELLQA-GHRYLDVRTPEEF-----------SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR  133 (188)
Q Consensus        73 -------~~i~~~~~~~~l~~-~~~iIDvR~~~ef-----------~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~  133 (188)
                             ..++++++.+++++ +.+|||+|+++||           ..||||||+|+|+.+...++.+.+.+.+.+.+..
T Consensus       145 ~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~ghIpgA~nip~~~~~~~~~~~~~~~l~~~~~~  224 (280)
T 1urh_A          145 NAAFNPEAVVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFG  224 (280)
T ss_dssp             CCCCCGGGBCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSSSBCCHHHHHHHHHT
T ss_pred             ccccCcccEEcHHHHHHHhcCCCcEEEeCCchhhcccccCCCCCCCcCccCCCceEeeHHHhhcCCccCCHHHHHHHHHH
Confidence                   12899999998864 5999999999999           6899999999999776666778888888887764


Q ss_pred             --cCCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhhC-CCccccc
Q 029759          134 --FRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLS-NQLLTEE  184 (188)
Q Consensus       134 --l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~-g~p~~~~  184 (188)
                        ++++++||+||++|.+|+.++..|+.+||+++ +|.|||.+|... ++|+++.
T Consensus       225 ~~~~~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~Pv~~~  279 (280)
T 1urh_A          225 RGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLPVEPV  279 (280)
T ss_dssp             TTCCSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC------------
T ss_pred             cCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHHhcCCCCCceec
Confidence              67899999999999999999999999999988 799999999885 9999763

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.3e-25  Score=185.76  Aligned_cols=163  Identities=17%  Similarity=0.179  Sum_probs=126.5

Q ss_pred             CCCCccCCCchhh-hhcccccccCCceeEEeecCCCcc-----------cccccccccccc--cccCCC-----------
Q 029759           18 SLPPVLCPHGNNR-RGLLSLTVDQQRCDNIGFISSKIL-----------SFCPKASLRGNL--EAVGVP-----------   72 (188)
Q Consensus        18 ~~~~~~~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~~~~~~~~~--~~~~~~-----------   72 (188)
                      +-.|.+.|+.+.| +.+..+|+++++.||+||.....+           |+.++..++|+.  ...+.+           
T Consensus        89 ~~~ph~LP~~~~f~~~l~~lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh~~V~vLdGg~aW~~~g~p~~~~~~~~~~p  168 (327)
T 3utn_X           89 SPYPHMFPTKKVFDDAMSNLGVQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYLLNNFNQYREFKYPLDSSKVAAFSP  168 (327)
T ss_dssp             SSSTTCCCCHHHHHHHHHHTTCCTTCEEEEECSSSSSSHHHHHHHHHHTTCSEEEEESCHHHHHHTTCCCBCCCCSCSCS
T ss_pred             CCCCCCCcCHHHHHHHHHHcCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCCCceeecccHHHHHHhCCCcccCCccCcCC
Confidence            4467788999999 999999999999999999877654           888888887642  011110           


Q ss_pred             ---------------cccCHHHHHHHHhCC-----CEEEecCChhhHh-----------cCCCCCeEEcCcccccC-CCC
Q 029759           73 ---------------TSVPVRVAHELLQAG-----HRYLDVRTPEEFS-----------AGHATGAINVPYMYRVG-SGM  120 (188)
Q Consensus        73 ---------------~~i~~~~~~~~l~~~-----~~iIDvR~~~ef~-----------~ghIpgAinip~~~~~~-~~~  120 (188)
                                     ..++.+++.+.++++     .+|||+|+++||.           .||||||+|+|+.+.++ ++.
T Consensus       169 ~p~~~~~~~~~~~~~~v~~~~~v~~~v~~~~~~~~~~lvDaRs~~rf~G~~~ep~~~~r~GHIPGA~nlP~~~~ld~~~~  248 (327)
T 3utn_X          169 YPKSHYESSESFQDKEIVDYEEMFQLVKSGELAKKFNAFDARSLGRFEGTEPEPRSDIPSGHIPGTQPLPYGSLLDPETK  248 (327)
T ss_dssp             SCCCCCCCSCCCHHHHEECHHHHHHHHHTTCHHHHCEEEECSCHHHHHTSSCCSSSSCCCCBCTTEEECCGGGGSCTTTC
T ss_pred             cCCcccccccccCchheecHHHHhhhhhcccccccceeeccCccceecccccCccccccCCCCCCCcccChhhccCCCCC
Confidence                           026777888877653     7899999999996           59999999999988775 333


Q ss_pred             -CCC-HHHHH----HHHh----ccCCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCc
Q 029759          121 -TKN-LKFVE----EVST----RFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQL  180 (188)
Q Consensus       121 -~~~-~~~l~----~~~~----~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p  180 (188)
                       +.. .+.+.    +.+.    .++++++||+||++|++|+.++..|+.+||+++ +|+|+|.+|.....|
T Consensus       249 ~~~~~~e~l~~~l~~~~~~~~~gid~~k~vI~yCgsGvtA~~~~laL~~lG~~~v~lYdGSWsEW~~r~~p  319 (327)
T 3utn_X          249 TYPEAGEAIHATLEKALKDFHCTLDPSKPTICSCGTGVSGVIIKTALELAGVPNVRLYDGSWTEWVLKSGP  319 (327)
T ss_dssp             CCCCTTHHHHHHHHHHHHHTTCCCCTTSCEEEECSSSHHHHHHHHHHHHTTCCSEEEESSHHHHHHHHHCG
T ss_pred             CCCCcHHHHHHHHHHHHHHhhcCCCCCCCEEEECChHHHHHHHHHHHHHcCCCCceeCCCcHHHhccccCC
Confidence             222 23333    3222    367889999999999999999999999999988 899999999876444

>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}

Probab=99.94  E-value=1.3e-26  Score=160.61  Aligned_cols=95  Identities=21%  Similarity=0.197  Sum_probs=85.2

Q ss_pred             ccCHHHHHHHHh--CCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHH
Q 029759           74 SVPVRVAHELLQ--AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  151 (188)
Q Consensus        74 ~i~~~~~~~~l~--~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~  151 (188)
                      .|+++++.++++  ++++|||+|+++||..||||||+|+|+.            .+......++++++||+||.+|.+|.
T Consensus         3 ~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~ivvyC~~g~rs~   70 (100)
T 3foj_A            3 SITVTELKEKILDANPVNIVDVRTDQETAMGIIPGAETIPMN------------SIPDNLNYFNDNETYYIICKAGGRSA   70 (100)
T ss_dssp             EECHHHHHHGGGSSSCCEEEECSCHHHHTTCBCTTCEECCGG------------GGGGCGGGSCTTSEEEEECSSSHHHH
T ss_pred             ccCHHHHHHHHhcCCCcEEEECCCHHHHhcCcCCCCEECCHH------------HHHHHHHhCCCCCcEEEEcCCCchHH
Confidence            588999999884  3499999999999999999999999984            44455566788999999999999999


Q ss_pred             HHHHHHHHCCCCce-EecCcHHhhhhCCCcc
Q 029759          152 MAATDLLNAVSTHA-NYPSKPLTWFLSNQLL  181 (188)
Q Consensus       152 ~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~  181 (188)
                      .+++.|+..|| ++ +|.||+.+|..+|+|+
T Consensus        71 ~a~~~L~~~G~-~v~~l~GG~~~W~~~g~pv  100 (100)
T 3foj_A           71 QVVQYLEQNGV-NAVNVEGGMDEFGDEGLEH  100 (100)
T ss_dssp             HHHHHHHTTTC-EEEEETTHHHHHCSSSCBC
T ss_pred             HHHHHHHHCCC-CEEEecccHHHHHHcCCCC
Confidence            99999999999 78 7999999999999986

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.93  E-value=5.5e-26  Score=186.45  Aligned_cols=162  Identities=17%  Similarity=0.211  Sum_probs=132.2

Q ss_pred             CCccCCCchhh-hhcccccccCCceeEEeecC--CCc-----------ccccccccccccc---cccCCC----------
Q 029759           20 PPVLCPHGNNR-RGLLSLTVDQQRCDNIGFIS--SKI-----------LSFCPKASLRGNL---EAVGVP----------   72 (188)
Q Consensus        20 ~~~~~p~~~~~-~~~~~~~~~~~~~~v~~~~~--~~~-----------~~~~~~~~~~~~~---~~~~~~----------   72 (188)
                      .+...|+.+.| +++..++++.++.+|+|+..  ...           +++.++..++|++   ...+.+          
T Consensus        85 ~~~~lp~~~~~~~~~~~lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~~~~~  164 (302)
T 3olh_A           85 YDHMLPGAEHFAEYAGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGKSQPAP  164 (302)
T ss_dssp             SSSCCCCHHHHHHHHHHTTCCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHSCCC-CCSCCCCCC
T ss_pred             CCCCCCCHHHHHHHHHHcCCCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHHHHHHcCCCcccCCCCcCc
Confidence            45566888899 88888899999999999853  222           2777777777765   111111          


Q ss_pred             ----------cccCHHHHHHHHhC-CCEEEecCChhhH-----------hcCCCCCeEEcCcccccC-CCCCCCHHHHHH
Q 029759           73 ----------TSVPVRVAHELLQA-GHRYLDVRTPEEF-----------SAGHATGAINVPYMYRVG-SGMTKNLKFVEE  129 (188)
Q Consensus        73 ----------~~i~~~~~~~~l~~-~~~iIDvR~~~ef-----------~~ghIpgAinip~~~~~~-~~~~~~~~~l~~  129 (188)
                                ..++.+++.+++++ +++|||+|+++||           ..||||||+|+|+.+... .+.+++.+.+++
T Consensus       165 ~~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~ef~G~~~~p~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~l~~  244 (302)
T 3olh_A          165 AEFRAQLDPAFIKTYEDIKENLESRRFQVVDSRATGRFRGTEPEPRDGIEPGHIPGTVNIPFTDFLSQEGLEKSPEEIRH  244 (302)
T ss_dssp             CCCCCCCCGGGEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSTTCCCCCCTTCEECCGGGGBCSSSCBCCHHHHHH
T ss_pred             CccccccCccceecHHHHHHhhcCCCcEEEecCCHHHccccccCCCcCCcCccCCCceecCHHHhcCCCCccCCHHHHHH
Confidence                      13788999888864 5899999999999           789999999999976654 578889999988


Q ss_pred             HHhc--cCCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcc
Q 029759          130 VSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLL  181 (188)
Q Consensus       130 ~~~~--l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~  181 (188)
                      .+..  ++++++||+||++|.||+.++..|+.+||+++ +|+|||.+|..+++|.
T Consensus       245 ~~~~~~~~~~~~iv~yC~sG~rs~~a~~~L~~~G~~~v~~~~Gg~~~W~~~~~P~  299 (302)
T 3olh_A          245 LFQEKKVDLSKPLVATCGSGVTACHVALGAYLCGKPDVPIYDGSWVEWYMRARPE  299 (302)
T ss_dssp             HHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTTTCCCCCEESSHHHHHHHHHCCC
T ss_pred             HHHhcCCCCCCCEEEECCChHHHHHHHHHHHHcCCCCeeEeCCcHHHHhhccCCC
Confidence            8774  67889999999999999999999999999988 8999999999988774

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.93  E-value=8.5e-26  Score=184.57  Aligned_cols=165  Identities=16%  Similarity=0.215  Sum_probs=134.0

Q ss_pred             CccCCCchhh-hhcccccccCCceeEEeecC--CCc-----------ccccccccccccc---cccCCC-----------
Q 029759           21 PVLCPHGNNR-RGLLSLTVDQQRCDNIGFIS--SKI-----------LSFCPKASLRGNL---EAVGVP-----------   72 (188)
Q Consensus        21 ~~~~p~~~~~-~~~~~~~~~~~~~~v~~~~~--~~~-----------~~~~~~~~~~~~~---~~~~~~-----------   72 (188)
                      +.+.|+.+.| +.+..++++..+.+|+|+..  +..           ++|.++..++|++   ...+.+           
T Consensus        71 ~~~lp~~~~~~~~l~~lgi~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~~~~~~  150 (296)
T 1rhs_A           71 EVMLPSEAGFADYVGSLGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEPSRPEPA  150 (296)
T ss_dssp             SSCCCCHHHHHHHHHHTTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCSCCCCCCC
T ss_pred             CCCCCCHHHHHHHHHHcCCCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHHHHHHcCCccccCCCCCCCC
Confidence            4566777888 77777888888999999776  433           2677777777766   111111           


Q ss_pred             ---------cccCHHHHHHHHh-CCCEEEecCChhhH------------hcCCCCCeEEcCcccccC-CCCCCCHHHHHH
Q 029759           73 ---------TSVPVRVAHELLQ-AGHRYLDVRTPEEF------------SAGHATGAINVPYMYRVG-SGMTKNLKFVEE  129 (188)
Q Consensus        73 ---------~~i~~~~~~~~l~-~~~~iIDvR~~~ef------------~~ghIpgAinip~~~~~~-~~~~~~~~~l~~  129 (188)
                               ..++++++.++++ .+.+|||||+++||            ..||||||+|+|+.+... ++.+.+.+.++.
T Consensus       151 ~~~~~~~~~~~i~~~e~~~~~~~~~~~liDvR~~~e~~G~~~~~~~~~~~~ghIpgA~nip~~~l~~~~~~~~~~~~l~~  230 (296)
T 1rhs_A          151 IFKATLNRSLLKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRA  230 (296)
T ss_dssp             CCCCCCCGGGEECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHHH
T ss_pred             CcccCCCcceEEcHHHHHHHhcCCCceEEeCCchhhcccccCCcccCCCcCccCCCCEeecHHHhcCCCCcCCCHHHHHH
Confidence                     2478999999886 45899999999999            789999999999976654 577888888888


Q ss_pred             HHhc--cCCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhh-CCCcccccc
Q 029759          130 VSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFL-SNQLLTEEK  185 (188)
Q Consensus       130 ~~~~--l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~-~g~p~~~~~  185 (188)
                      .+..  ++++++||+||++|.||+.++..|..+||+++ +|.|||.+|.. .++|+++..
T Consensus       231 ~~~~~~~~~~~~ivv~C~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv~~~~  290 (296)
T 1rhs_A          231 MFEAKKVDLTKPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETWVSQ  290 (296)
T ss_dssp             HHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHSCGGGEEBT
T ss_pred             HHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCCcccCC
Confidence            7764  67899999999999999999999999999988 79999999998 699998754

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.93  E-value=9.7e-26  Score=186.24  Aligned_cols=163  Identities=19%  Similarity=0.178  Sum_probs=134.3

Q ss_pred             cCCCchhh-hhcccccccCCceeEEeecCCC-----------cccccccccccccc---cccCCC---------------
Q 029759           23 LCPHGNNR-RGLLSLTVDQQRCDNIGFISSK-----------ILSFCPKASLRGNL---EAVGVP---------------   72 (188)
Q Consensus        23 ~~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~-----------~~~~~~~~~~~~~~---~~~~~~---------------   72 (188)
                      ..|+...| +++..+|++..+.+|+|+..+.           .+++.++.+++|++   ...+.+               
T Consensus        92 ~~~~~~~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~~~~~~~~~~  171 (318)
T 3hzu_A           92 DYINGEQFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGRDLWLAERRETTLDVPTKTCTGYPV  171 (318)
T ss_dssp             SBCCHHHHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBCCCCCCCCCCCCC
T ss_pred             CCCCHHHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCHHHHhhcCCCcccCCCCCCCCcccc
Confidence            45677888 8888888899999999987654           12777777777665   111110               


Q ss_pred             -------cccCHHHHHHHHhCCCEEEecCChhhHhc----------------CCCCCeEEcCcccccC-CCCCCCHHHHH
Q 029759           73 -------TSVPVRVAHELLQAGHRYLDVRTPEEFSA----------------GHATGAINVPYMYRVG-SGMTKNLKFVE  128 (188)
Q Consensus        73 -------~~i~~~~~~~~l~~~~~iIDvR~~~ef~~----------------ghIpgAinip~~~~~~-~~~~~~~~~l~  128 (188)
                             ..++++++.++++++ +|||+|+++||..                ||||||+|+|+.+.+. ++.+++.+.++
T Consensus       172 ~~~~~~~~~i~~~el~~~l~~~-~liDvR~~~e~~~~~~~~~~~~~~~~~~~GhIpGA~niP~~~~~~~~g~~~~~~~l~  250 (318)
T 3hzu_A          172 VQRNDAPIRAFRDDVLAILGAQ-PLIDVRSPEEYTGKRTHMPDYPEEGALRAGHIPTAVHIPWGKAADESGRFRSREELE  250 (318)
T ss_dssp             CCCCCTTTBCCHHHHHHHTTTS-CEEECSCHHHHHTSCSSCTTSCSCSCSSCSBCTTCEECCGGGGBCTTSCBCCHHHHH
T ss_pred             ccCCCccccccHHHHHHhhcCC-eEEecCCHHHhcccccCccccccccCCcCcCCCCeeecCHHHhcCCCCcCCCHHHHH
Confidence                   136789999998876 9999999999998                9999999999976554 68888989999


Q ss_pred             HHHhccCCCCcEEEEcCCChHHHHHHHHHHH-CCCCce-EecCcHHhhhh-CCCccccccc
Q 029759          129 EVSTRFRKHDEIIVGCQSGKRSMMAATDLLN-AVSTHA-NYPSKPLTWFL-SNQLLTEEKL  186 (188)
Q Consensus       129 ~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~-~G~~~v-~l~GG~~~W~~-~g~p~~~~~~  186 (188)
                      +.+..++++++||+||++|.||+.++..|.. +||+++ +|+|||.+|.. .++|++++..
T Consensus       251 ~~~~~l~~~~~ivvyC~sG~rs~~a~~~L~~~~G~~~v~~~~GG~~~W~~~~g~Pv~~g~~  311 (318)
T 3hzu_A          251 RLYDFINPDDQTVVYCRIGERSSHTWFVLTHLLGKADVRNYDGSWTEWGNAVRVPIVAGEE  311 (318)
T ss_dssp             HHTTTCCTTCCCEEECSSSHHHHHHHHHHHHTSCCSSCEECTTHHHHHTTSTTCCCBCSSS
T ss_pred             HHhcCCCCCCcEEEEcCChHHHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCcccCCC
Confidence            9887788999999999999999999999997 999988 79999999996 5999998653

>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A

Probab=99.93  E-value=6.2e-26  Score=159.30  Aligned_cols=100  Identities=22%  Similarity=0.221  Sum_probs=90.1

Q ss_pred             cccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHH
Q 029759           73 TSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  151 (188)
Q Consensus        73 ~~i~~~~~~~~l~~-~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~  151 (188)
                      ..++++++.+++++ +.+|||+|+++||..||||||+|+|+.            .+...+..++++++||+||.+|.+|.
T Consensus         5 ~~i~~~~l~~~~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~ivvyc~~g~rs~   72 (108)
T 1gmx_A            5 ECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTND------------TLGAFMRDNDFDTPVMVMCYHGNSSK   72 (108)
T ss_dssp             EEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCHH------------HHHHHHHHSCTTSCEEEECSSSSHHH
T ss_pred             cccCHHHHHHHHhCCCCEEEEcCCHHHHHhCCCccCEeCCHH------------HHHHHHHhcCCCCCEEEEcCCCchHH
Confidence            46899999999876 499999999999999999999999983            56666666889999999999999999


Q ss_pred             HHHHHHHHCCCCce-EecCcHHhhhhCCCcccccc
Q 029759          152 MAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK  185 (188)
Q Consensus       152 ~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~  185 (188)
                      .+++.|+..||+++ +|.||+.+|..+ +|++++.
T Consensus        73 ~a~~~L~~~G~~~v~~l~GG~~~W~~~-~p~~~~~  106 (108)
T 1gmx_A           73 GAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEVAY  106 (108)
T ss_dssp             HHHHHHHHHTCSSEEEETTHHHHHHHH-CGGGEEC
T ss_pred             HHHHHHHHcCCceEEEecCCHHHHHHh-CCccccc
Confidence            99999999999998 799999999999 9998764

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.93  E-value=7.7e-26  Score=182.35  Aligned_cols=164  Identities=18%  Similarity=0.131  Sum_probs=128.9

Q ss_pred             CCccCCCchhh-hhcccccccCCceeEEeecCCC-c----------ccccccccccccc---cccCCC------------
Q 029759           20 PPVLCPHGNNR-RGLLSLTVDQQRCDNIGFISSK-I----------LSFCPKASLRGNL---EAVGVP------------   72 (188)
Q Consensus        20 ~~~~~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~----------~~~~~~~~~~~~~---~~~~~~------------   72 (188)
                      .+.+.|+.+.| +++..++++..+.+|+|+..+. .          .++.++..++|++   ...+.+            
T Consensus        59 ~~~~~~~~~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~w~~~g~p~~~~~~~~~~~~  138 (271)
T 1e0c_A           59 APGLQPPREQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRELPAPAGGP  138 (271)
T ss_dssp             CTTSCCCHHHHHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCCCCCCCCSC
T ss_pred             CCCCCCCHHHHHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHcCCCccCCCCCCCCCC
Confidence            35567888899 7777777888899999987664 1          1677777777765   111111            


Q ss_pred             --------cccCHHHHHHHHhCC-CEEEecCChhhHh--------cCCCCCeEEcCcccccC-CCCCCCHHHHHHHHh--
Q 029759           73 --------TSVPVRVAHELLQAG-HRYLDVRTPEEFS--------AGHATGAINVPYMYRVG-SGMTKNLKFVEEVST--  132 (188)
Q Consensus        73 --------~~i~~~~~~~~l~~~-~~iIDvR~~~ef~--------~ghIpgAinip~~~~~~-~~~~~~~~~l~~~~~--  132 (188)
                              ..++++++.++++++ .+|||+|+++||.        .||||||+|+|+.+... ++.+..++.+++.+.  
T Consensus       139 ~~~~~~~~~~i~~~~l~~~l~~~~~~liDvR~~~e~~g~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~  218 (271)
T 1e0c_A          139 VALSLHDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEEL  218 (271)
T ss_dssp             CCCCCCSTTBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGGTTEECTTHHHHHHHT
T ss_pred             ccccCCccccccHHHHHHHhcCCCcEEEEcCChhhcCCccCCCCcCCcCCCceeccHHHhCCCCCCCCCHHHHHHHHHHc
Confidence                    136899999988764 8999999999999        99999999999875443 223333366666666  


Q ss_pred             ccCCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhhC-CCcccc
Q 029759          133 RFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLS-NQLLTE  183 (188)
Q Consensus       133 ~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~-g~p~~~  183 (188)
                      .++++++||+||++|.+|+.+++.|+.+||+++ +|.|||.+|... ++|+++
T Consensus       219 ~~~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~~~~pv~~  271 (271)
T 1e0c_A          219 GITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVEL  271 (271)
T ss_dssp             TCCTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCBC
T ss_pred             CCCCCCCEEEECCchHHHHHHHHHHHHcCCCCceeeCCcHHHHhcCCCCCCcC
Confidence            478899999999999999999999999999988 899999999998 999874

>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A

Probab=99.93  E-value=8e-26  Score=158.41  Aligned_cols=97  Identities=23%  Similarity=0.277  Sum_probs=79.3

Q ss_pred             HHHHHHhC---CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHHHH
Q 029759           79 VAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAAT  155 (188)
Q Consensus        79 ~~~~~l~~---~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~  155 (188)
                      +++++++.   +++|||+|+++||..||||||+|+|+.           ++.......++++++||+||.+|.+|..+++
T Consensus         2 el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~-----------~l~~~~~~~l~~~~~ivvyc~~g~rs~~a~~   70 (106)
T 3hix_A            2 VLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQTSQAVN   70 (106)
T ss_dssp             -----------CCEEEECSCHHHHHTCEETTCEECCGG-----------GHHHHHHHHSCTTSCEEEECSSHHHHHHHHH
T ss_pred             hHHHHHHcCCCCeEEEECCCHHHHhcCcCCCCEeCCHH-----------HHHHHHHhcCCCCCeEEEEECCCChHHHHHH
Confidence            55666652   489999999999999999999999995           3334444568889999999999999999999


Q ss_pred             HHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          156 DLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       156 ~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      .|+.+||+++ +|.||+.+|..+++|+++...
T Consensus        71 ~L~~~G~~~v~~l~GG~~~W~~~g~~~~~~~~  102 (106)
T 3hix_A           71 LLRSAGFEHVSELKGGLAAWKAIGGPTELEHH  102 (106)
T ss_dssp             HHHHTTCSCEEECTTHHHHHHHTTCCEEECCE
T ss_pred             HHHHcCCcCEEEecCCHHHHHHCCCCCCCCCC
Confidence            9999999998 799999999999999988654

>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A

Probab=99.92  E-value=3.2e-25  Score=163.07  Aligned_cols=100  Identities=21%  Similarity=0.248  Sum_probs=88.7

Q ss_pred             cCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHH
Q 029759           75 VPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  151 (188)
Q Consensus        75 i~~~~~~~~l~~---~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~  151 (188)
                      |+++++.++++.   +++|||+|++.||..||||||+|+|+.           ++.......++++++||+||.+|.+|.
T Consensus         2 Is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAi~ip~~-----------~l~~~~~~~l~~~~~ivvyC~~g~rs~   70 (141)
T 3ilm_A            2 SDAHVLKSRLEWGEPAFTILDVRDRSTYNDGHIMGAMAMPIE-----------DLVDRASSSLEKSRDIYVYGAGDEQTS   70 (141)
T ss_dssp             CCHHHHHHHHHHSCSCEEEEECSCHHHHHHCEETTCEECCGG-----------GHHHHHHTTSCTTSEEEEECSSHHHHH
T ss_pred             CCHHHHHHHHhcCCCCEEEEECCCHHHHhCCCCCCCEEcCHH-----------HHHHHHHhcCCCCCeEEEEECCChHHH
Confidence            789999999873   389999999999999999999999995           333334456888999999999999999


Q ss_pred             HHHHHHHHCCCCce-EecCcHHhhhhCCCcccccc
Q 029759          152 MAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK  185 (188)
Q Consensus       152 ~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~  185 (188)
                      .+++.|..+||+++ +|.||+.+|..+|+|+++..
T Consensus        71 ~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~  105 (141)
T 3ilm_A           71 QAVNLLRSAGFEHVSELKGGLAAWKAIGGPTEGII  105 (141)
T ss_dssp             HHHHHHHHTTCCSEEECTTHHHHHHHTTCCEEEEC
T ss_pred             HHHHHHHHcCCCCEEEecCHHHHHHHCCCCcccCC
Confidence            99999999999998 79999999999999998865

>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}

Probab=99.92  E-value=6.3e-25  Score=160.65  Aligned_cols=110  Identities=23%  Similarity=0.250  Sum_probs=94.8

Q ss_pred             cccCHHHHHHHHh---CCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc--cCCCCcEEEEcCCC
Q 029759           73 TSVPVRVAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSG  147 (188)
Q Consensus        73 ~~i~~~~~~~~l~---~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~--l~~~~~ivv~C~sG  147 (188)
                      ..|+++++.++++   .+++|||||+++||..||||||+|+|+.+ +......+++.+...+..  ++++++||+||.+|
T Consensus        23 ~~is~~el~~~l~~~~~~~~liDvR~~~e~~~ghIpgAinip~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~ivvyC~~G  101 (139)
T 3d1p_A           23 QSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRS-HPDAFALDPLEFEKQIGIPKPDSAKELIFYCASG  101 (139)
T ss_dssp             EECCHHHHHHHHHHTCTTEEEEECSCHHHHHHCCCTTCEECCTTT-CTTGGGSCHHHHHHHHSSCCCCTTSEEEEECSSS
T ss_pred             ceecHHHHHHHHhCCCCCeEEEECcCHHHHhCCCCCCcEEcCHHH-hhhhccCCHHHHHHHHhccCCCCCCeEEEECCCC
Confidence            4699999999986   35899999999999999999999999864 344445566677776653  57889999999999


Q ss_pred             hHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcccc
Q 029759          148 KRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTE  183 (188)
Q Consensus       148 ~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~  183 (188)
                      .+|..++..|..+||+++ +|.||+.+|..+|+|+..
T Consensus       102 ~rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~  138 (139)
T 3d1p_A          102 KRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDKLD  138 (139)
T ss_dssp             HHHHHHHHHHHTTTCCSEEECTTHHHHHHHTTGGGCC
T ss_pred             chHHHHHHHHHHcCCCCeEEeCCcHHHHHHcCCCCCC
Confidence            999999999999999998 799999999999999864

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.92  E-value=8e-25  Score=177.57  Aligned_cols=163  Identities=20%  Similarity=0.205  Sum_probs=130.2

Q ss_pred             cCCCchhh-hhcccccccCCceeEEeecCCCc-----------cccccccccccccc---ccCCC---------------
Q 029759           23 LCPHGNNR-RGLLSLTVDQQRCDNIGFISSKI-----------LSFCPKASLRGNLE---AVGVP---------------   72 (188)
Q Consensus        23 ~~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~~~~~~~~~~---~~~~~---------------   72 (188)
                      ..|+.+.| +++..++++..+.+|+|+..+..           .++.++..++|++.   ..+.+               
T Consensus        60 ~~~~~~~~~~~~~~~gi~~~~~ivvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~  139 (285)
T 1uar_A           60 DFISEEEFAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTTEVPSYPPGRYEV  139 (285)
T ss_dssp             SBCCHHHHHHHHHHTTCCTTCEEEEECHHHHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBCCCCCCCCCCCCC
T ss_pred             CCCCHHHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCcccCCCCcccCCCccc
Confidence            44666778 77777778888888888765431           26767777776651   11111               


Q ss_pred             ------cccCHHHHHHHHh----CCCEEEecCChhhHh----------------cCCCCCeEEcCcccccC-CCCCCCHH
Q 029759           73 ------TSVPVRVAHELLQ----AGHRYLDVRTPEEFS----------------AGHATGAINVPYMYRVG-SGMTKNLK  125 (188)
Q Consensus        73 ------~~i~~~~~~~~l~----~~~~iIDvR~~~ef~----------------~ghIpgAinip~~~~~~-~~~~~~~~  125 (188)
                            ..++++++.++++    .+..|||+|++.||.                .||||||+|+|+.+... ++.+.+.+
T Consensus       140 ~~~~~~~~i~~~el~~~l~~~~~~~~~liDvR~~~e~~g~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~  219 (285)
T 1uar_A          140 PYRDESIRAYRDDVLEHIIKVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAE  219 (285)
T ss_dssp             CCCCGGGEECHHHHHHHHHHHHTTSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHH
T ss_pred             ccCCcceEEcHHHHHHHHhhcccCCCcEEEcCCccceeeeccccccccccccccCCcCCCccccCHHHhcCCCCcCCCHH
Confidence                  1389999999884    446899999999998                79999999999876554 57788889


Q ss_pred             HHHHHHhc--cCCCCcEEEEcCCChHHHHHHHHHH-HCCCCce-EecCcHHhhh-hCCCcccccc
Q 029759          126 FVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLL-NAVSTHA-NYPSKPLTWF-LSNQLLTEEK  185 (188)
Q Consensus       126 ~l~~~~~~--l~~~~~ivv~C~sG~~a~~a~~~L~-~~G~~~v-~l~GG~~~W~-~~g~p~~~~~  185 (188)
                      .+.+.+..  ++++++||+||++|.+|+.+++.|+ .+||+++ +|+|||.+|. ..++|++++.
T Consensus       220 ~l~~~~~~~g~~~~~~ivvyC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~~~g~pv~~g~  284 (285)
T 1uar_A          220 ELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIAKGE  284 (285)
T ss_dssp             HHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBCSC
T ss_pred             HHHHHHHHcCCCCCCCEEEECCchHHHHHHHHHHHHHcCCCCcceeCchHHHHhcCCCCCcccCC
Confidence            99888887  7889999999999999999999999 9999988 8999999998 6799998753

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.92  E-value=9.2e-25  Score=176.55  Aligned_cols=161  Identities=20%  Similarity=0.181  Sum_probs=127.5

Q ss_pred             cCCCchhh-hhcccccccCCceeEEeecCCCc-----------ccccccccccccc---cccCCCc--------------
Q 029759           23 LCPHGNNR-RGLLSLTVDQQRCDNIGFISSKI-----------LSFCPKASLRGNL---EAVGVPT--------------   73 (188)
Q Consensus        23 ~~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~~-----------~~~~~~~~~~~~~---~~~~~~~--------------   73 (188)
                      ..|+.+.| +++..++++..+.+|+|+..+..           .++.++..++|++   ...+.+.              
T Consensus        58 ~~~~~~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~~~~~~~~~  137 (277)
T 3aay_A           58 DFVDAQQFSKLLSERGIANEDTVILYGGNNNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPVSRPVTSYTA  137 (277)
T ss_dssp             SBCCHHHHHHHHHHHTCCTTSEEEEECSGGGHHHHHHHHHHHHTTCCSEEEETTHHHHHHHTTCCCBCCCCCCCCCCCCC
T ss_pred             CCCCHHHHHHHHHHcCCCCCCeEEEECCCCCchHHHHHHHHHHcCCCcEEEecCCHHHHHHcCCccccCCCCcCCCCccc
Confidence            44666778 77777778888888999776432           2677777777765   1111110              


Q ss_pred             -------ccCHHHHHHHHhCCCEEEecCChhhHhc----------------CCCCCeEEcCcccccC-CCCCCCHHHHHH
Q 029759           74 -------SVPVRVAHELLQAGHRYLDVRTPEEFSA----------------GHATGAINVPYMYRVG-SGMTKNLKFVEE  129 (188)
Q Consensus        74 -------~i~~~~~~~~l~~~~~iIDvR~~~ef~~----------------ghIpgAinip~~~~~~-~~~~~~~~~l~~  129 (188)
                             .++++++.+++.++. |||+|+++||..                ||||||+|+|+.+... ++.+.+.+.+.+
T Consensus       138 ~~~~~~~~~~~~el~~~~~~~~-liDvR~~~e~~~~~~~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~~~~~~~~~l~~  216 (277)
T 3aay_A          138 SPPDNTIRAFRDEVLAAINVKN-LIDVRSPDEFSGKILAPAHLPQEQSQRPGHIPGAINVPWSRAANEDGTFKSDEELAK  216 (277)
T ss_dssp             CCCCGGGEECHHHHHHTTTTSE-EEECSCHHHHHTSCCC-----CCCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHH
T ss_pred             cCcccchhcCHHHHHHhcCCCC-EEEeCChHHeeeeecccccccccccccCCcCCCceecCHHHhcCCCCcCCCHHHHHH
Confidence                   167899998887655 999999999985                9999999999975543 577888888888


Q ss_pred             HHhc--cCCCCcEEEEcCCChHHHHHHHHHHH-CCCCce-EecCcHHhhhh-CCCccccc
Q 029759          130 VSTR--FRKHDEIIVGCQSGKRSMMAATDLLN-AVSTHA-NYPSKPLTWFL-SNQLLTEE  184 (188)
Q Consensus       130 ~~~~--l~~~~~ivv~C~sG~~a~~a~~~L~~-~G~~~v-~l~GG~~~W~~-~g~p~~~~  184 (188)
                      .+..  ++++++||+||++|.+|+.+++.|+. +||+++ +|+|||.+|.. .++|++++
T Consensus       217 ~~~~~~~~~~~~iv~yC~~G~rs~~a~~~L~~~~G~~~v~~l~GG~~~W~~~~g~pv~~g  276 (277)
T 3aay_A          217 LYADAGLDNSKETIAYCRIGERSSHTWFVLRELLGHQNVKNYDGSWTEYGSLVGAPIELG  276 (277)
T ss_dssp             HHHHHTCCTTSCEEEECSSHHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBCC
T ss_pred             HHHHcCCCCCCCEEEEcCcHHHHHHHHHHHHHHcCCCcceeeCchHHHHhcCCCCCCccC
Confidence            7764  68899999999999999999999995 999998 89999999999 79999874

>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3

Probab=99.92  E-value=6.9e-25  Score=160.47  Aligned_cols=103  Identities=18%  Similarity=0.231  Sum_probs=90.3

Q ss_pred             CcccCHHHHHHHHh-C-CCEEEecCChhhHhc-CC--CCCeEEcCcccccCCCCCCCHHHHHH--HHhccCCCCcEEEEc
Q 029759           72 PTSVPVRVAHELLQ-A-GHRYLDVRTPEEFSA-GH--ATGAINVPYMYRVGSGMTKNLKFVEE--VSTRFRKHDEIIVGC  144 (188)
Q Consensus        72 ~~~i~~~~~~~~l~-~-~~~iIDvR~~~ef~~-gh--IpgAinip~~~~~~~~~~~~~~~l~~--~~~~l~~~~~ivv~C  144 (188)
                      ...|+++++.++++ + +++|||||+++||.. ||  ||||+|+|+.            .+..  .+..++++++||+||
T Consensus        22 ~~~is~~el~~~l~~~~~~~liDVR~~~E~~~~gh~~IpgAinip~~------------~l~~~~~~~~l~~~~~ivvyC   89 (137)
T 1qxn_A           22 MVMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRG------------KLEPLLAKSGLDPEKPVVVFC   89 (137)
T ss_dssp             SEEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTT------------TSHHHHHHHCCCTTSCEEEEC
T ss_pred             CcccCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCcCCCCCEEcchH------------HhhhHHhhccCCCCCeEEEEc
Confidence            34699999999987 4 499999999999999 99  9999999985            1222  345578899999999


Q ss_pred             CCChHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          145 QSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       145 ~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      .+|.||..+++.|+..||+++ +|.||+.+|..+++|++++..
T Consensus        90 ~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  132 (137)
T 1qxn_A           90 KTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDRSH  132 (137)
T ss_dssp             CSSSCHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEECCCC
T ss_pred             CCCcHHHHHHHHHHHcCCcceEEEcCcHHHHHHCCCCcccccc
Confidence            999999999999999999988 799999999999999987654

>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}

Probab=99.92  E-value=6.5e-25  Score=160.40  Aligned_cols=104  Identities=18%  Similarity=0.203  Sum_probs=86.4

Q ss_pred             CcccCHHHHHHHHh--C-CCEEEecCChhhHhc-CCCCCeEEcCcccccCCCCCCCHHHHHHHH--------hccCCCCc
Q 029759           72 PTSVPVRVAHELLQ--A-GHRYLDVRTPEEFSA-GHATGAINVPYMYRVGSGMTKNLKFVEEVS--------TRFRKHDE  139 (188)
Q Consensus        72 ~~~i~~~~~~~~l~--~-~~~iIDvR~~~ef~~-ghIpgAinip~~~~~~~~~~~~~~~l~~~~--------~~l~~~~~  139 (188)
                      ...|+++++.++++  + +.+|||||++.||.. ||||||+|+|+.            .+....        ..++++++
T Consensus        21 ~~~is~~~l~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~~ip~~------------~l~~~~~~~~~~~~~~~~~~~~   88 (139)
T 2hhg_A           21 IETLTTADAIALHKSGASDVVIVDIRDPREIERDGKIPGSFSCTRG------------MLEFWIDPQSPYAKPIFQEDKK   88 (139)
T ss_dssp             SEEECHHHHHHHHHTTCTTEEEEECSCHHHHHHHCCCTTCEECCGG------------GHHHHHCTTSTTCCGGGGSSSE
T ss_pred             cCccCHHHHHHHHhccCCCeEEEECCCHHHHHhCCCCCCeEECChH------------HHHHhcCccchhhhccCCCCCe
Confidence            34699999999997  3 489999999999999 999999999985            222221        13578899


Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcccccccC
Q 029759          140 IIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKLK  187 (188)
Q Consensus       140 ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~~  187 (188)
                      ||+||.+|.+|..+++.|+.+||++| +|.||+.+|..+|+|+++...+
T Consensus        89 ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~~  137 (139)
T 2hhg_A           89 FVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGAWRDAGGPIEAWAPK  137 (139)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHHHHHTTCCCC-----
T ss_pred             EEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCCeecCCCC
Confidence            99999999999999999999999988 7999999999999999986543

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.91  E-value=7.2e-25  Score=187.29  Aligned_cols=161  Identities=11%  Similarity=-0.000  Sum_probs=135.3

Q ss_pred             CCCchhh-hhcccccccCCceeEEeecCC---------CcccccccccccccccccC-------CCcccCHHHHHHHHh-
Q 029759           24 CPHGNNR-RGLLSLTVDQQRCDNIGFISS---------KILSFCPKASLRGNLEAVG-------VPTSVPVRVAHELLQ-   85 (188)
Q Consensus        24 ~p~~~~~-~~~~~~~~~~~~~~v~~~~~~---------~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~l~-   85 (188)
                      .|+.+.| +++..+|++.++.+|+|+...         ..+|+.++..+++++.+.+       ....++++++.++++ 
T Consensus        58 lp~~~~f~~~~~~lgi~~~~~vVvy~~~~~a~r~~w~l~~~G~~~V~vl~Gg~~~~g~~~~~~~~~~~i~~~~l~~~~~~  137 (423)
T 2wlr_A           58 KMSTEQLNAWIKQHNLKTDAPVALYGNDKDVDAVKTRLQKAGLTHISILSDALSEPSRLQKLPHFEQLVYPQWLHDLQQG  137 (423)
T ss_dssp             GCCHHHHHHHHHHTTCCTTSCEEEESCHHHHHHHHHHHHHTTCCCEEEBTTTTSCGGGCBCCTTGGGEECHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHHcCCceeEeccchhhcCCCcccCCCCCcccCHHHHHHHhhc
Confidence            5678899 888888999999999997652         2338888888888764421       123589999998886 


Q ss_pred             --------CCCEEEecC--ChhhHhcCCCCCeEEcCcccccC--CCCCCCHHHHHHHHhc--cCCCCcEEEEcCCChHHH
Q 029759           86 --------AGHRYLDVR--TPEEFSAGHATGAINVPYMYRVG--SGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSM  151 (188)
Q Consensus        86 --------~~~~iIDvR--~~~ef~~ghIpgAinip~~~~~~--~~~~~~~~~l~~~~~~--l~~~~~ivv~C~sG~~a~  151 (188)
                              .+.+|||+|  ++++|..||||||+|+|+.+...  .+.+++++.+++.+..  ++++++||+||++|.+|+
T Consensus       138 ~~~~~~~~~~~~liDvR~~~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~l~~~~~~~gi~~~~~ivvyC~~G~~a~  217 (423)
T 2wlr_A          138 KEVTAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKHGIRHDTTVILYGRDVYAAA  217 (423)
T ss_dssp             CCCTTCCSSCEEEEEEESSSCSHHHHCBCTTCEEEEGGGTEETTTTEECCHHHHHHHHHHTTCCTTSEEEEECSSHHHHH
T ss_pred             cccccccCCCeEEEEecCCCchhhccCcCCCcEEcCHHHhccCCCCCCCCHHHHHHHHHHcCCCCCCeEEEECCCchHHH
Confidence                    248999999  99999999999999999975543  4778888999888865  578999999999999999


Q ss_pred             HHHHHHHHCCCCce-EecCcHHhhhhCCCccccc
Q 029759          152 MAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEE  184 (188)
Q Consensus       152 ~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~  184 (188)
                      .+++.|+.+||+++ +|+|||.+|...++|++++
T Consensus       218 ~~~~~L~~~G~~~v~~l~Gg~~~W~~~g~pv~~g  251 (423)
T 2wlr_A          218 RVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERG  251 (423)
T ss_dssp             HHHHHHHHHTCSCEEEETTTHHHHHHTTCCCBCS
T ss_pred             HHHHHHHHcCCCCeEEECCCHHHHhhCCCCcccC
Confidence            99999999999988 8999999999999999884

>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=99.91  E-value=5.4e-25  Score=150.84  Aligned_cols=91  Identities=20%  Similarity=0.154  Sum_probs=76.0

Q ss_pred             ccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHH
Q 029759           74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMA  153 (188)
Q Consensus        74 ~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a  153 (188)
                      .++++++.++++++.+|||+|+++||..||||||+|+|+.            .+...+..+++ ++||+||.+|.+|..+
T Consensus         3 ~is~~~l~~~~~~~~~liDvR~~~e~~~ghi~gAi~ip~~------------~l~~~~~~l~~-~~ivvyC~~g~rs~~a   69 (94)
T 1wv9_A            3 KVRPEELPALLEEGVLVVDVRPADRRSTPLPFAAEWVPLE------------KIQKGEHGLPR-RPLLLVCEKGLLSQVA   69 (94)
T ss_dssp             EECGGGHHHHHHTTCEEEECCCC--CCSCCSSCCEECCHH------------HHTTTCCCCCS-SCEEEECSSSHHHHHH
T ss_pred             cCCHHHHHHHHHCCCEEEECCCHHHHhcccCCCCEECCHH------------HHHHHHHhCCC-CCEEEEcCCCChHHHH
Confidence            4788899998887899999999999999999999999984            44444555778 9999999999999999


Q ss_pred             HHHHHHCCCCce-EecCcHHhhhhCC
Q 029759          154 ATDLLNAVSTHA-NYPSKPLTWFLSN  178 (188)
Q Consensus       154 ~~~L~~~G~~~v-~l~GG~~~W~~~g  178 (188)
                      ++.|+..||+ + +|.||+.+|..+|
T Consensus        70 ~~~L~~~G~~-v~~l~GG~~~W~~~G   94 (94)
T 1wv9_A           70 ALYLEAEGYE-AMSLEGGLQALTQGK   94 (94)
T ss_dssp             HHHHHHHTCC-EEEETTGGGCC----
T ss_pred             HHHHHHcCCc-EEEEcccHHHHHhCc
Confidence            9999999999 8 7999999998754

>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A

Probab=99.91  E-value=1.6e-24  Score=155.82  Aligned_cols=100  Identities=19%  Similarity=0.101  Sum_probs=88.9

Q ss_pred             cccCHHHHHHHHhC---CCEEEecCChhhH-hcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCCh
Q 029759           73 TSVPVRVAHELLQA---GHRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (188)
Q Consensus        73 ~~i~~~~~~~~l~~---~~~iIDvR~~~ef-~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~  148 (188)
                      ..|+++++.+++++   +++|||||++.|| ..||||||+|+|+            +.+...+..++++++||+||.+|.
T Consensus        15 ~~is~~el~~~l~~~~~~~~liDvR~~~e~~~~ghIpgA~nip~------------~~l~~~~~~l~~~~~ivvyC~~g~   82 (124)
T 3flh_A           15 LYIDHHTVLADMQNATGKYVVLDVRNAPAQVKKDQIKGAIAMPA------------KDLATRIGELDPAKTYVVYDWTGG   82 (124)
T ss_dssp             TEECHHHHHHHHHHTCCCEEEEECCCSCHHHHCCEETTCEECCH------------HHHHHHGGGSCTTSEEEEECSSSS
T ss_pred             ceecHHHHHHHHHcCCCCEEEEECCCHHHHHhcCcCCCCEECCH------------HHHHHHHhcCCCCCeEEEEeCCCC
Confidence            46899999999864   3899999999998 9999999999998            467777777889999999999999


Q ss_pred             H--HHHHHHHHHHCCCCce-EecCcHHhhhhCCCcccccc
Q 029759          149 R--SMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK  185 (188)
Q Consensus       149 ~--a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~  185 (188)
                      +  |..+++.|+..||+ + +|.||+.+|..+++|+.+..
T Consensus        83 r~~s~~a~~~L~~~G~~-v~~l~GG~~~W~~~~~p~~~~~  121 (124)
T 3flh_A           83 TTLGKTALLVLLSAGFE-AYELAGALEGWKGMQLPLEHHH  121 (124)
T ss_dssp             CSHHHHHHHHHHHHTCE-EEEETTHHHHHHHTTCCEEC--
T ss_pred             chHHHHHHHHHHHcCCe-EEEeCCcHHHHHHcCCCCCccc
Confidence            8  89999999999998 7 79999999999999988754

>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A

Probab=99.91  E-value=1.3e-24  Score=160.24  Aligned_cols=101  Identities=19%  Similarity=0.159  Sum_probs=87.1

Q ss_pred             ccCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCC--h
Q 029759           74 SVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG--K  148 (188)
Q Consensus        74 ~i~~~~~~~~l~~~---~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG--~  148 (188)
                      .|+++++.++++++   ++|||||+++||..||||||+|+|+.+..           ......++++++||+||.+|  .
T Consensus        17 ~is~~el~~~l~~~~~~~~liDvR~~~ey~~ghIpgAinip~~~l~-----------~~~~~~l~~~~~ivvyC~~g~~~   85 (144)
T 3nhv_A           17 ETDIADLSIDIKKGYEGIIVVDVRDAEAYKECHIPTAISIPGNKIN-----------EDTTKRLSKEKVIITYCWGPACN   85 (144)
T ss_dssp             EEEHHHHHHHHHTTCCSEEEEECSCHHHHHHCBCTTCEECCGGGCS-----------TTTTTTCCTTSEEEEECSCTTCC
T ss_pred             ccCHHHHHHHHHcCCCCEEEEECcCHHHHhcCCCCCCEECCHHHHh-----------HHHHhhCCCCCeEEEEECCCCcc
Confidence            58999999999754   89999999999999999999999985211           11334578899999999998  7


Q ss_pred             HHHHHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          149 RSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       149 ~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      +|..+++.|+.+||+ + +|.||+.+|..+|+|+++...
T Consensus        86 rs~~aa~~L~~~G~~-v~~l~GG~~~W~~~g~pv~~~~~  123 (144)
T 3nhv_A           86 GATKAAAKFAQLGFR-VKELIGGIEYWRKENGEVEGTLG  123 (144)
T ss_dssp             HHHHHHHHHHHTTCE-EEEEESHHHHHHHTTCCCBSSSG
T ss_pred             HHHHHHHHHHHCCCe-EEEeCCcHHHHHHCCCCccCCCC
Confidence            999999999999994 7 799999999999999998654

>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}

Probab=99.90  E-value=6.5e-24  Score=149.58  Aligned_cols=89  Identities=16%  Similarity=0.181  Sum_probs=77.4

Q ss_pred             CCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc--cCCCCcEEEEcCCChHHHHHHHHHHHCCCC
Q 029759           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKRSMMAATDLLNAVST  163 (188)
Q Consensus        86 ~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~--l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~  163 (188)
                      ++++|||||+++||..||||||+|+|+.            .+......  ++++++||+||.+|.+|..+++.|+.+||+
T Consensus        15 ~~~~liDvR~~~e~~~ghIpgAi~ip~~------------~l~~~~~~~~~~~~~~ivvyC~~G~rs~~aa~~L~~~G~~   82 (110)
T 2k0z_A           15 NDFIVVDVRELDEYEELHLPNATLISVN------------DQEKLADFLSQHKDKKVLLHCRAGRRALDAAKSMHELGYT   82 (110)
T ss_dssp             GGSEEEEEECHHHHHHSBCTTEEEEETT------------CHHHHHHHHHSCSSSCEEEECSSSHHHHHHHHHHHHTTCC
T ss_pred             CCeEEEECCCHHHHhcCcCCCCEEcCHH------------HHHHHHHhcccCCCCEEEEEeCCCchHHHHHHHHHHCCCC
Confidence            4589999999999999999999999985            23333332  678999999999999999999999999998


Q ss_pred             ceEecCcHHhhhhCCCccccccc
Q 029759          164 HANYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       164 ~v~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      +.+|.||+.+|..+++|++++..
T Consensus        83 ~~~l~GG~~~W~~~g~p~~~~~~  105 (110)
T 2k0z_A           83 PYYLEGNVYDFEKYGFRMVYDDT  105 (110)
T ss_dssp             CEEEESCGGGTTTTTCCCBCCCS
T ss_pred             EEEecCCHHHHHHCCCcEecCCC
Confidence            86699999999999999987543

>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}

Probab=99.89  E-value=5.7e-23  Score=151.92  Aligned_cols=112  Identities=23%  Similarity=0.246  Sum_probs=86.0

Q ss_pred             CcccCHHHHHHHHhC--CCEEEecCChhhHhc-CCC------CCeEEcCcccccCCCCCCCHHHHHHHHh-----ccCCC
Q 029759           72 PTSVPVRVAHELLQA--GHRYLDVRTPEEFSA-GHA------TGAINVPYMYRVGSGMTKNLKFVEEVST-----RFRKH  137 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~--~~~iIDvR~~~ef~~-ghI------pgAinip~~~~~~~~~~~~~~~l~~~~~-----~l~~~  137 (188)
                      ...|+++++.+++++  +.+|||||+++||.. |||      |||+|+|+.+ .. +.. .+++..++..     .++++
T Consensus         4 ~~~is~~el~~~l~~~~~~~liDVR~~~e~~~~ghi~~~g~~pgAv~ip~~~-~~-~~~-~~~~~~~l~~~l~~~~~~~~   80 (148)
T 2fsx_A            4 AGDITPLQAWEMLSDNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWAT-SD-GTH-NDNFLAELRDRIPADADQHE   80 (148)
T ss_dssp             SEEECHHHHHHHHHHCTTCEEEECSCHHHHHHTCEECCGGGTCCCEECCSBC-TT-SCB-CTTHHHHHHHHCC-------
T ss_pred             cccCCHHHHHHHHhcCCCeEEEECCCHHHHHhcCCCccccCCCCcEEeeeec-cc-ccc-CHHHHHHHHHHHhhccCCCC
Confidence            346899999999873  599999999999997 999      9999999964 21 111 2223333322     24788


Q ss_pred             CcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcH------------HhhhhCCCccccccc
Q 029759          138 DEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKP------------LTWFLSNQLLTEEKL  186 (188)
Q Consensus       138 ~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~------------~~W~~~g~p~~~~~~  186 (188)
                      ++||+||++|.+|..+++.|+.+||+++ +|.||+            .+|..+|+|++...+
T Consensus        81 ~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~w~~~~g~~~~~~W~~~glp~~~~~~  142 (148)
T 2fsx_A           81 RPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFEGHLDAEGHRGATGWRAVGLPWRQGRS  142 (148)
T ss_dssp             CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTTCCCCTTSCCCSSSTTTTTCSEECC--
T ss_pred             CEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChhhhhhhccccccccHHHcCCCCCcccc
Confidence            9999999999999999999999999988 799999            689999999987643

>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains; HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A* 3ipp_A

Probab=99.88  E-value=1.8e-22  Score=172.46  Aligned_cols=162  Identities=12%  Similarity=0.052  Sum_probs=122.3

Q ss_pred             Cchhh-hhcccccccCCceeEEeecCCCcc----------ccccccccccccc---------ccCC--------------
Q 029759           26 HGNNR-RGLLSLTVDQQRCDNIGFISSKIL----------SFCPKASLRGNLE---------AVGV--------------   71 (188)
Q Consensus        26 ~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~----------~~~~~~~~~~~~~---------~~~~--------------   71 (188)
                      +.+.| +.+...+++..+.+|+|+..+...          ++.++..++|++.         ..+.              
T Consensus       187 ~~~~l~~~~~~~gi~~~~~ivvyC~~G~~a~~~~~~L~~~G~~~v~~l~Gg~~~W~~~g~pv~~g~~~~~~~~~~~~~~~  266 (423)
T 2wlr_A          187 SDEQLKAMLAKHGIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERGTPPKVKAEPDFGVKI  266 (423)
T ss_dssp             CHHHHHHHHHHTTCCTTSEEEEECSSHHHHHHHHHHHHHHTCSCEEEETTTHHHHHHTTCCCBCSSCCCCCCCCCCSSCS
T ss_pred             CHHHHHHHHHHcCCCCCCeEEEECCCchHHHHHHHHHHHcCCCCeEEECCCHHHHhhCCCCcccCCCCCCCCCcCccccc
Confidence            34455 344445667778888887653211          6666666665540         0000              


Q ss_pred             ----CcccCHHHHHHHHhC-CCEEEecCChhhH-----------hcCCCCCeEEcCcc-------ccc-CCCCCCCHHHH
Q 029759           72 ----PTSVPVRVAHELLQA-GHRYLDVRTPEEF-----------SAGHATGAINVPYM-------YRV-GSGMTKNLKFV  127 (188)
Q Consensus        72 ----~~~i~~~~~~~~l~~-~~~iIDvR~~~ef-----------~~ghIpgAinip~~-------~~~-~~~~~~~~~~l  127 (188)
                          ...++.+++.+++++ +.+|||+|+++||           ..||||||+|+|+.       +.. .++.+++.+.+
T Consensus       267 ~~~~~~~i~~~e~~~~l~~~~~~liDvR~~~e~~G~~~~~~~~~~~GhIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~l  346 (423)
T 2wlr_A          267 PAQPQLMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGEIAGARWGHAGSDSTHMEDFHNPDGTMRSADDI  346 (423)
T ss_dssp             CSCGGGEECHHHHHTTTTCSSEEEEECSCHHHHHTSCCSSTTCCCCSEETTCEECCCCSSTTCCGGGBCTTSSBCCHHHH
T ss_pred             CCChhheecHHHHHHHhcCCCceEEecCchhheeeeccCCCCCCcCCCCCCccccccccccccHHHHcCCCCcCCCHHHH
Confidence                013788999888765 4899999999999           78999999999975       222 25678888888


Q ss_pred             HHHHh--ccCCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhh-CCCcccccccC
Q 029759          128 EEVST--RFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFL-SNQLLTEEKLK  187 (188)
Q Consensus       128 ~~~~~--~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~-~g~p~~~~~~~  187 (188)
                      .+.+.  .++++++||+||++|.||+.++..|+.+||+++ +|.|||.+|.. .++|+++...+
T Consensus       347 ~~~~~~~~~~~~~~ivvyC~sG~rs~~aa~~L~~~G~~~v~~~~GG~~~W~~~~~~Pv~~~~~~  410 (423)
T 2wlr_A          347 TAMWKAWNIKPEQQVSFYCGTGWRASETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVATGERG  410 (423)
T ss_dssp             HHHHHTTTCCTTSEEEEECSSSHHHHHHHHHHHHTTCSSEEEESSHHHHHTTSTTSCEECSSCC
T ss_pred             HHHHHHcCCCCCCcEEEECCcHHHHHHHHHHHHHcCCCCcceeCccHHHHhcCCCCCcccCCCC
Confidence            88875  468899999999999999999999999999988 79999999998 69999986654

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.88  E-value=5.1e-23  Score=173.33  Aligned_cols=163  Identities=13%  Similarity=0.111  Sum_probs=121.4

Q ss_pred             CccCCCchhh-hhcccccccCCceeEEee-cCCCc-----------ccccccccccccc---cccCCCcc-----cCHH-
Q 029759           21 PVLCPHGNNR-RGLLSLTVDQQRCDNIGF-ISSKI-----------LSFCPKASLRGNL---EAVGVPTS-----VPVR-   78 (188)
Q Consensus        21 ~~~~p~~~~~-~~~~~~~~~~~~~~v~~~-~~~~~-----------~~~~~~~~~~~~~---~~~~~~~~-----i~~~-   78 (188)
                      +...|+.+.| +++..++++..+.+|+|+ ..+..           +|| ++.+++|++   ...+.+..     ..+. 
T Consensus        74 ~~~lp~~~~f~~~l~~~gi~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~-~V~~L~GG~~aW~~~g~pv~~~~~~~~~~~  152 (373)
T 1okg_A           74 RHPLPPXAEFIDWCMANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMESGEPSSLPRP  152 (373)
T ss_dssp             SSCCCCHHHHHHHHHHTTCSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEECSCCCSCCCC
T ss_pred             cccCCCHHHHHHHHHHcCCCCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCCHHHHHhhcCCcccCCCCcCccc
Confidence            4567788889 777778889899999998 33311           277 888888877   22222211     1100 


Q ss_pred             ----HH---------HHHHhCCCEEEecCChhhHh-----------cCCCCCeEEcCccccc--C-CCC-CCCHHHHHHH
Q 029759           79 ----VA---------HELLQAGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRV--G-SGM-TKNLKFVEEV  130 (188)
Q Consensus        79 ----~~---------~~~l~~~~~iIDvR~~~ef~-----------~ghIpgAinip~~~~~--~-~~~-~~~~~~l~~~  130 (188)
                          ++         .+.+..+.+|||+|+++||.           .||||||+|+|+.+..  . ++. +++.+.+++.
T Consensus       153 ~~~~~~~~~~~~~~~~~~v~~~~~lIDvR~~~Ef~G~~~~~~~~~~~GhIpGAiniP~~~l~~~~~~~~~~~~~~~l~~~  232 (373)
T 1okg_A          153 ATHWPFKTAFQHHYLVDEIPPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHN  232 (373)
T ss_dssp             CCCCCSCSSCCSBCCGGGSCTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHH
T ss_pred             cccccccccCChHHHHHHhccCceEEeCCCHHHccccccccccCCcCccCCCcEEecHHHhhccCCCCCccCCHHHHHHH
Confidence                00         00113458999999999999           9999999999997654  3 455 7788888888


Q ss_pred             Hhcc----CC---CCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhh-CCCccccc
Q 029759          131 STRF----RK---HDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFL-SNQLLTEE  184 (188)
Q Consensus       131 ~~~l----~~---~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~-~g~p~~~~  184 (188)
                      +..+    ++   +++||+||++|.||+.++..|+.+||+++ +|.|||.+|.. .++|+++.
T Consensus       233 ~~~~~~gi~~~~~d~~ivvyC~sG~rs~~a~~~L~~~G~~~v~~~~GG~~~W~~~~~~pv~~~  295 (373)
T 1okg_A          233 IMTVVQGAGDAADLSSFVFSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIMRS  295 (373)
T ss_dssp             HHTTCC-----CCCTTSEEECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHHHH
T ss_pred             HHhhhcCCCcccCCCCEEEECCchHHHHHHHHHHHHcCCCCeeEeCChHHHHhcCCCCCcccC
Confidence            7754    77   89999999999999999999999999988 89999999987 58887653

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.88  E-value=1.1e-22  Score=175.75  Aligned_cols=147  Identities=18%  Similarity=0.134  Sum_probs=113.6

Q ss_pred             CCCchhh-hhcccccccCCceeEEeecCCCc---------ccccccccccccc---cccCC----CcccCHHHHHHHHhC
Q 029759           24 CPHGNNR-RGLLSLTVDQQRCDNIGFISSKI---------LSFCPKASLRGNL---EAVGV----PTSVPVRVAHELLQA   86 (188)
Q Consensus        24 ~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~~---------~~~~~~~~~~~~~---~~~~~----~~~i~~~~~~~~l~~   86 (188)
                      .|-...| ++...++ +.++.+|+|+.....         +++.++....+++   ...+.    ...++++++.+++++
T Consensus       309 i~~~~~~~~~~~~l~-~~~~~vvvy~~~~~~~~~~~~L~~~G~~~v~~~l~G~~~W~~~g~~~~~~~~i~~~~l~~~~~~  387 (474)
T 3tp9_A          309 IPWNKSFVTWAGWLL-PADRPIHLLAADAIAPDVIRALRSIGIDDVVDWTDPAAVDRAAPDDVASYANVSPDEVRGALAQ  387 (474)
T ss_dssp             CCSSTTHHHHHHHHC-CSSSCEEEECCTTTHHHHHHHHHHTTCCCEEEEECGGGGTTCCGGGEECCEEECHHHHHHTTTT
T ss_pred             ECcchHHHHHHHhcC-CCCCeEEEEECCCcHHHHHHHHHHcCCcceEEecCcHHHHHhcccccccccccCHHHHHHHhcC
Confidence            3444467 6666666 667777777665432         2566555422233   11121    235899999998875


Q ss_pred             -CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHHHHHHHHCCCCce
Q 029759           87 -GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA  165 (188)
Q Consensus        87 -~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v  165 (188)
                       +.+|||+|+++||..||||||+|+|+.            .+...+..++++++||+||++|.+|+.++..|+.+||+++
T Consensus       388 ~~~~lvDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~vvv~C~~G~ra~~a~~~L~~~G~~~v  455 (474)
T 3tp9_A          388 QGLWLLDVRNVDEWAGGHLPQAHHIPLS------------KLAAHIHDVPRDGSVCVYCRTGGRSAIAASLLRAHGVGDV  455 (474)
T ss_dssp             TCCEEEECSCHHHHHHCBCTTCEECCHH------------HHTTTGGGSCSSSCEEEECSSSHHHHHHHHHHHHHTCSSE
T ss_pred             CCcEEEECCCHHHHhcCcCCCCEECCHH------------HHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHHHcCCCCE
Confidence             599999999999999999999999984            5555666788999999999999999999999999999988


Q ss_pred             -EecCcHHhhhhCCCcccc
Q 029759          166 -NYPSKPLTWFLSNQLLTE  183 (188)
Q Consensus       166 -~l~GG~~~W~~~g~p~~~  183 (188)
                       +|.|||.+|..+++|+++
T Consensus       456 ~~~~Gg~~~W~~~g~p~~~  474 (474)
T 3tp9_A          456 RNMVGGYEAWRGKGFPVEA  474 (474)
T ss_dssp             EEETTHHHHHHHTTCCCBC
T ss_pred             EEecChHHHHHhCCCCCCC
Confidence             799999999999999874

>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A

Probab=99.88  E-value=7.6e-23  Score=137.48  Aligned_cols=75  Identities=32%  Similarity=0.426  Sum_probs=66.8

Q ss_pred             CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc--CCCCcEEEEcCCChHHHHHHHHHHHCCCCce
Q 029759           88 HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGKRSMMAATDLLNAVSTHA  165 (188)
Q Consensus        88 ~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l--~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v  165 (188)
                      ++|||+|+++||..||||||+|+|+.            .+...+..+  +++++||+||.+|.+|..+++.|+.+||+++
T Consensus         2 ~~liDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v   69 (85)
T 2jtq_A            2 EHWIDVRVPEQYQQEHVQGAINIPLK------------EVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHV   69 (85)
T ss_dssp             EEEEECSCHHHHTTEEETTCEECCHH------------HHHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSE
T ss_pred             CEEEECCCHHHHHhCCCCCCEEcCHH------------HHHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCE
Confidence            57999999999999999999999984            555555555  7889999999999999999999999999999


Q ss_pred             -EecCcHHhhh
Q 029759          166 -NYPSKPLTWF  175 (188)
Q Consensus       166 -~l~GG~~~W~  175 (188)
                       ++ |||.+|.
T Consensus        70 ~~l-GG~~~w~   79 (85)
T 2jtq_A           70 ENA-GGLKDIA   79 (85)
T ss_dssp             EEE-EETTTCC
T ss_pred             Eec-cCHHHHh
Confidence             56 9999994

>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X

Probab=99.87  E-value=4.2e-22  Score=160.41  Aligned_cols=115  Identities=16%  Similarity=0.094  Sum_probs=98.2

Q ss_pred             CcccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHHhc--cCCCCcEEEE
Q 029759           72 PTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDEIIVG  143 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~-~~~iIDvR~~~ef~~ghIpgAinip~~~~~~-----~~~~~~~~~l~~~~~~--l~~~~~ivv~  143 (188)
                      +..|+++++.+++++ +.+|||+|++.||..||||||+|+|+.....     .+.+.+.+.+.+.+..  ++++++||+|
T Consensus         8 ~~~is~~~l~~~l~~~~~~iiDvR~~~ey~~ghIpgA~~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvvy   87 (271)
T 1e0c_A            8 PLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVVY   87 (271)
T ss_dssp             CSEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             CceeeHHHHHHhccCCCeEEEEcCCcchhhhCcCCCCEECCHHHhccCCCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEE
Confidence            457999999998864 5899999999999999999999999864332     2456667777777666  6789999999


Q ss_pred             cCCCh-HHHHHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          144 CQSGK-RSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       144 C~sG~-~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      |.+|. +|.++++.|+.+||+++ +|.||+.+|..+++|+++...
T Consensus        88 c~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~~w~~~g~p~~~~~~  132 (271)
T 1e0c_A           88 DDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRELP  132 (271)
T ss_dssp             CSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCCCC
T ss_pred             cCCCCccHHHHHHHHHHcCCCCeEEecCCHHHHHHcCCCccCCCC
Confidence            99987 99999999999999998 799999999999999987543

>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle, phosphorylation, plant, hydrolase; NMR {Arabidopsis thaliana} SCOP: c.46.1.1

Probab=99.87  E-value=4.4e-23  Score=153.39  Aligned_cols=106  Identities=14%  Similarity=0.118  Sum_probs=87.1

Q ss_pred             cccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcC-CChHH
Q 029759           73 TSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKRS  150 (188)
Q Consensus        73 ~~i~~~~~~~~l~~-~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~-sG~~a  150 (188)
                      ..|+++++.+++++ +.+|||+|+++||..||||||+|+|+.+..        +.+.+....++++++||+||+ +|.++
T Consensus        28 ~~Is~~el~~~l~~~~~~lIDvR~~~ey~~ghIpgAinip~~~l~--------~~~~~l~~~~~~~~~iVvyC~~~G~rs   99 (152)
T 1t3k_A           28 SYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFD--------DKISHLVQNVKDKDTLVFHSALSQVRG   99 (152)
T ss_dssp             EEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSS--------TTHHHHHHTCCSCCEEEESSSCCSSSH
T ss_pred             ceECHHHHHHHhcCCCEEEEECCChhhccCccCCCCEECCHHHHH--------HHHHHHHHhcCCCCEEEEEcCCCCcch
Confidence            46788888877753 489999999999999999999999985221        234555555678899999999 89999


Q ss_pred             HHHHHHHH--------HCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          151 MMAATDLL--------NAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       151 ~~a~~~L~--------~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      ..++..|.        ..||+++ +|+||+.+|..+++|+++..+
T Consensus       100 ~~aa~~L~~~l~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~~  144 (152)
T 1t3k_A          100 PTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRCAE  144 (152)
T ss_dssp             HHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCCSC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEcCCHHHHHHcCCccccCCC
Confidence            88888774        3899988 799999999999999988654

>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A

Probab=99.87  E-value=7.8e-22  Score=162.80  Aligned_cols=113  Identities=12%  Similarity=0.106  Sum_probs=97.0

Q ss_pred             cccCHHHHHHHHhC-CCEEEecCChhh-HhcCCCCCeEEcCccccc---CCCCCCCHHHHHHHHhc--cCCCCcEEEEcC
Q 029759           73 TSVPVRVAHELLQA-GHRYLDVRTPEE-FSAGHATGAINVPYMYRV---GSGMTKNLKFVEEVSTR--FRKHDEIIVGCQ  145 (188)
Q Consensus        73 ~~i~~~~~~~~l~~-~~~iIDvR~~~e-f~~ghIpgAinip~~~~~---~~~~~~~~~~l~~~~~~--l~~~~~ivv~C~  145 (188)
                      ..|+++++.+++++ +++|||+|++.| |..||||||+|+|+...+   ..+.+.+++.+...+..  ++++++||+||.
T Consensus        40 ~~is~~~l~~~l~~~~~~iiDvR~~~e~y~~gHIpGAi~ip~~~~~~~~~~~~~~~~~~~~~~l~~lgi~~~~~vVvyc~  119 (318)
T 3hzu_A           40 RLVTADWLSAHMGAPGLAIVESDEDVLLYDVGHIPGAVKIDWHTDLNDPRVRDYINGEQFAELMDRKGIARDDTVVIYGD  119 (318)
T ss_dssp             GEECHHHHHHHTTCTTEEEEECCSSTTSGGGCBCTTEEECCHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEECS
T ss_pred             ceecHHHHHHhccCCCEEEEECCCChhHHhcCcCCCCeEeCchhhhccCcccCCCCHHHHHHHHHHcCCCCCCeEEEECC
Confidence            36999999999965 489999999876 999999999999975323   24566677788887776  678999999999


Q ss_pred             CCh-HHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcccccc
Q 029759          146 SGK-RSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK  185 (188)
Q Consensus       146 sG~-~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~  185 (188)
                      +|. +|.++++.|+.+||++| +|+||+.+|..+|+|+++..
T Consensus       120 ~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~  161 (318)
T 3hzu_A          120 KSNWWAAYALWVFTLFGHADVRLLNGGRDLWLAERRETTLDV  161 (318)
T ss_dssp             GGGHHHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBCCC
T ss_pred             CCCccHHHHHHHHHHcCCCceEEccCCHHHHhhcCCCcccCC
Confidence            887 89999999999999998 79999999999999998853

>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}

Probab=99.87  E-value=2.7e-22  Score=144.91  Aligned_cols=101  Identities=21%  Similarity=0.237  Sum_probs=76.9

Q ss_pred             ccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCC----------CC-----------CCCHHHHHHHHh
Q 029759           74 SVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGS----------GM-----------TKNLKFVEEVST  132 (188)
Q Consensus        74 ~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~----------~~-----------~~~~~~l~~~~~  132 (188)
                      .++++++.+  .++++|||||++.||..||||||+|+|+......          +.           ......+...+.
T Consensus         6 ~i~~~el~~--~~~~~iiDvR~~~e~~~ghIpgA~nip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (134)
T 3g5j_A            6 VIKIEKALK--LDKVIFVDVRTEGEYEEDHILNAINMPLFKNNEHNEVGTIYKMQGKHEAIQKGFDYVSYKLKDIYLQAA   83 (134)
T ss_dssp             EECHHHHTT--CTTEEEEECSCHHHHHHCCCTTCEECCSSCHHHHHHHHHHHHHHCHHHHHHHHHHHHGGGHHHHHHHHH
T ss_pred             ccCHHHHHh--cCCcEEEEcCCHHHHhcCCCCCCEEcCccchhhhhcccceeeecChhHHHhcccccccccHHHHHHHHH
Confidence            578888776  4569999999999999999999999998521100          00           000012333344


Q ss_pred             ccCCC-CcEEEEc-CCChHHHHHHHHHHHCCCCce-EecCcHHhhhhC
Q 029759          133 RFRKH-DEIIVGC-QSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLS  177 (188)
Q Consensus       133 ~l~~~-~~ivv~C-~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~  177 (188)
                      .++++ ++||+|| .+|.+|..+++.|+.+|| ++ +|.||+.+|...
T Consensus        84 ~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~-~v~~l~GG~~~W~~~  130 (134)
T 3g5j_A           84 ELALNYDNIVIYCARGGMRSGSIVNLLSSLGV-NVYQLEGGYKAYRNF  130 (134)
T ss_dssp             HHHTTCSEEEEECSSSSHHHHHHHHHHHHTTC-CCEEETTHHHHHHHH
T ss_pred             HhccCCCeEEEEECCCChHHHHHHHHHHHcCC-ceEEEeCcHHHHHHH
Confidence            46677 9999999 589999999999999999 78 799999999764

>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2

Probab=99.86  E-value=1e-21  Score=158.91  Aligned_cols=114  Identities=16%  Similarity=0.072  Sum_probs=97.0

Q ss_pred             cccCHHHHHHHHhC-CCEEEecC----------ChhhHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHHhc--c
Q 029759           73 TSVPVRVAHELLQA-GHRYLDVR----------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--F  134 (188)
Q Consensus        73 ~~i~~~~~~~~l~~-~~~iIDvR----------~~~ef~~ghIpgAinip~~~~~~-----~~~~~~~~~l~~~~~~--l  134 (188)
                      ..|+++++.+++++ +.+|||+|          ++.||..||||||+|+|+.....     .+.+.+.+.+...+..  +
T Consensus         4 ~~is~~~l~~~l~~~~~~iiDvR~~~~~~~~~~~~~e~~~ghIpgAi~ip~~~l~~~~~~~~~~~~~~~~~~~~~~~~gi   83 (280)
T 1urh_A            4 WFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELGV   83 (280)
T ss_dssp             CEECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHTTC
T ss_pred             ceeeHHHHHHhcCCCCeEEEEeeccCCcccccchhhhhhhCcCCCCEECCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence            36899999998874 58999999          78899999999999999864332     1355667777777766  5


Q ss_pred             CCCCcEEEEcCCChH-HHHHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          135 RKHDEIIVGCQSGKR-SMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       135 ~~~~~ivv~C~sG~~-a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      +++++||+||++|.+ |.++++.|+.+||++| +|+||+.+|..+++|+++...
T Consensus        84 ~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  137 (280)
T 1urh_A           84 NQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGAV  137 (280)
T ss_dssp             CTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBBSCC
T ss_pred             CCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHHCCCcccCCCC
Confidence            789999999999988 9999999999999998 799999999999999988543

>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A

Probab=99.86  E-value=7.5e-22  Score=143.61  Aligned_cols=107  Identities=19%  Similarity=0.212  Sum_probs=86.7

Q ss_pred             cccCHHHHHHHHh-C-CCEEEecCChhhHhc-CCC------CCeEEcCcccccCCCCCCCHHHHHHHHhcc--CCCCcEE
Q 029759           73 TSVPVRVAHELLQ-A-GHRYLDVRTPEEFSA-GHA------TGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEII  141 (188)
Q Consensus        73 ~~i~~~~~~~~l~-~-~~~iIDvR~~~ef~~-ghI------pgAinip~~~~~~~~~~~~~~~l~~~~~~l--~~~~~iv  141 (188)
                      ..|+++++.++++ + +++|||||+++||.. +|+      |||+|||+.+.      .+.+++......+  +++++||
T Consensus         5 ~~is~~e~~~~l~~~~~~~liDVR~~~E~~~~~~~~~~g~~~ga~~ip~~~~------~~~~~~~~l~~~~~~~~~~~iv   78 (134)
T 1vee_A            5 SSGSAKNAYTKLGTDDNAQLLDIRATADFRQVGSPNIKGLGKKAVSTVYNGE------DKPGFLKKLSLKFKDPENTTLY   78 (134)
T ss_dssp             CBCCHHHHHHHHHHCTTEEEEECSCHHHHHHTCEECCTTTSCCCEECCCCGG------GHHHHHHHHHTTCSCGGGCEEE
T ss_pred             CccCHHHHHHHHHhCCCeEEEEcCCHHHHhhcCCCcccccCCceEEeecccc------cChhHHHHHHHHhCCCCCCEEE
Confidence            3689999999986 3 589999999999985 443      79999998521      1233444443333  6789999


Q ss_pred             EEcCCChHHHHHHHHHHHCCCCce-EecCcH---HhhhhCCCcccccc
Q 029759          142 VGCQSGKRSMMAATDLLNAVSTHA-NYPSKP---LTWFLSNQLLTEEK  185 (188)
Q Consensus       142 v~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~---~~W~~~g~p~~~~~  185 (188)
                      +||.+|.||..++..|+.+||+++ ++.||+   .+|..+|+|+++..
T Consensus        79 v~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~~~~~W~~~g~p~~~~~  126 (134)
T 1vee_A           79 ILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSLPWIEPK  126 (134)
T ss_dssp             EECSSSTTHHHHHHHHHHHTCSEEEECTTTTTSTTSSGGGTCCEECCC
T ss_pred             EEeCCCCcHHHHHHHHHHcCCcceEEecCCccCCcchhhcCCCCCCCC
Confidence            999999999999999999999988 799999   78999999998754

>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4, structural genomics, ubiquitin biology, structural genomics consortium, SGC; 1.25A {Homo sapiens}

Probab=99.86  E-value=4.2e-22  Score=142.91  Aligned_cols=103  Identities=21%  Similarity=0.186  Sum_probs=78.9

Q ss_pred             ccCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHH---HHHHh----c--cCCCCcEEE
Q 029759           74 SVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFV---EEVST----R--FRKHDEIIV  142 (188)
Q Consensus        74 ~i~~~~~~~~l~~~--~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l---~~~~~----~--l~~~~~ivv  142 (188)
                      .|+++++.++++++  ++|||||+++||..||||||+|+|+.+....    ....+   ...+.    .  ++++++||+
T Consensus         2 ~is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~ivv   77 (127)
T 3i2v_A            2 RVSVTDYKRLLDSGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERR----DAESLKLLKEAIWEEKQGTQEGAAVPIYV   77 (127)
T ss_dssp             EECHHHHHHHHHHTCCCEEEECSCHHHHHHCCCTTSEECCHHHHHTT----CHHHHHHHHHHHHHHHTTC---CCEEEEE
T ss_pred             CCCHHHHHHHHhCCCCeEEEECCCHHHhhheecCCceeCChHHHhhh----hhhhHHHHHHHHhhhcccccCCCCCeEEE
Confidence            47899999998653  8999999999999999999999998532211    11111   11111    1  234569999


Q ss_pred             EcCCChHHHHHHHHHHHC------CCCce-EecCcHHhhhhCCCc
Q 029759          143 GCQSGKRSMMAATDLLNA------VSTHA-NYPSKPLTWFLSNQL  180 (188)
Q Consensus       143 ~C~sG~~a~~a~~~L~~~------G~~~v-~l~GG~~~W~~~g~p  180 (188)
                      ||.+|.+|..+++.|..+      ||.++ +|.|||.+|..+..|
T Consensus        78 ~C~~G~rs~~a~~~L~~~gg~~~~G~~~v~~l~GG~~~W~~~~~~  122 (127)
T 3i2v_A           78 ICKLGNDSQKAVKILQSLSAAQELDPLTVRDVVGGLMAWAAKIDG  122 (127)
T ss_dssp             ECSSSSHHHHHHHHHHHHHHTTSSSCEEEEEETTHHHHHHHHTCT
T ss_pred             EcCCCCcHHHHHHHHHHhhccccCCCceEEEecCCHHHHHHhcCC
Confidence            999999999999999998      68888 799999999987555

>3aay_A Putative thiosulfate sulfurtransferase; sulfurtranserase, structural genomics, PSI, structure initiative; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A

Probab=99.85  E-value=3.2e-21  Score=155.75  Aligned_cols=113  Identities=13%  Similarity=0.138  Sum_probs=95.4

Q ss_pred             ccCHHHHHHHHhC-CCEEEecCC-hhhHhcCCCCCeEEcCcccccC---CCCCCCHHHHHHHHhc--cCCCCcEEEEcCC
Q 029759           74 SVPVRVAHELLQA-GHRYLDVRT-PEEFSAGHATGAINVPYMYRVG---SGMTKNLKFVEEVSTR--FRKHDEIIVGCQS  146 (188)
Q Consensus        74 ~i~~~~~~~~l~~-~~~iIDvR~-~~ef~~ghIpgAinip~~~~~~---~~~~~~~~~l~~~~~~--l~~~~~ivv~C~s  146 (188)
                      .|+++++.+++++ +.+|||+|+ +++|..||||||+|+|+.....   .+.+.+.+.+...+..  ++++++||+||.+
T Consensus         7 ~is~~~l~~~l~~~~~~liDvR~~~~ey~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~vvvyc~~   86 (277)
T 3aay_A            7 LVSADWAESNLHAPKVVFVEVDEDTSAYDRDHIAGAIKLDWRTDLQDPVKRDFVDAQQFSKLLSERGIANEDTVILYGGN   86 (277)
T ss_dssp             EECHHHHHTTTTCTTEEEEEEESSSHHHHHCBSTTCEEEETTTTTBCSSSSSBCCHHHHHHHHHHHTCCTTSEEEEECSG
T ss_pred             eEcHHHHHHHhCCCCEEEEEcCCChhhHhhCCCCCcEEecccccccCCCCCCCCCHHHHHHHHHHcCCCCCCeEEEECCC
Confidence            5899999998875 489999998 8999999999999999864332   2455666777777666  6789999999998


Q ss_pred             Ch-HHHHHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          147 GK-RSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       147 G~-~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      |. +|.++++.|+.+||++| +|.||+.+|..+++|+++...
T Consensus        87 g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~  128 (277)
T 3aay_A           87 NNWFAAYAYWYFKLYGHEKVKLLDGGRKKWELDGRPLSSDPV  128 (277)
T ss_dssp             GGHHHHHHHHHHHHTTCCSEEEETTHHHHHHHTTCCCBCCCC
T ss_pred             CCchHHHHHHHHHHcCCCcEEEecCCHHHHHHcCCccccCCC
Confidence            74 78999999999999988 799999999999999987543

>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1

Probab=99.84  E-value=6.7e-21  Score=142.44  Aligned_cols=102  Identities=18%  Similarity=0.249  Sum_probs=83.9

Q ss_pred             CcccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHh---cc-CCCCcE
Q 029759           72 PTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST---RF-RKHDEI  140 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~-------~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~---~l-~~~~~i  140 (188)
                      ...|+++++.+++++       +.+|||||++.||..||||||+|+|+.           +.......   .+ ++++++
T Consensus        22 ~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghIpgAinip~~-----------~~~~~~~~~~~~~~~~~~~i   90 (161)
T 1c25_A           22 LKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHME-----------EEVEDFLLKKPIVPTDGKRV   90 (161)
T ss_dssp             SCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHTTTSCCCCCTTSEE
T ss_pred             cceeCHHHHHHHHhccccccCCCeEEEECCChHHccCCcccCcEeCChh-----------HHHHHHHhhhhhccCCCCCe
Confidence            346999999999975       489999999999999999999999984           23333322   22 567886


Q ss_pred             --EEEcC-CChHHHHHHHHHHH----------CCCCce-EecCcHHhhhhCCCccccc
Q 029759          141 --IVGCQ-SGKRSMMAATDLLN----------AVSTHA-NYPSKPLTWFLSNQLLTEE  184 (188)
Q Consensus       141 --vv~C~-sG~~a~~a~~~L~~----------~G~~~v-~l~GG~~~W~~~g~p~~~~  184 (188)
                        |+||. +|.+|..++..|..          +||+++ +|.||+.+|..++.|+...
T Consensus        91 vvv~yC~~sg~rs~~aa~~L~~~~~~~~~l~~~G~~~v~~l~GG~~~W~~~~~~~~~~  148 (161)
T 1c25_A           91 IVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMKCQSYCEP  148 (161)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHHHGGGEES
T ss_pred             EEEEEcCCCCcchHHHHHHHHHHHHhhhhccccCCceEEEEcCCHHHHHHHcccccCC
Confidence              67899 99999999999986          499988 7999999999998887765

>1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A

Probab=99.84  E-value=1.8e-20  Score=152.89  Aligned_cols=113  Identities=15%  Similarity=0.063  Sum_probs=95.1

Q ss_pred             cccCHHHHHHHHhC-----CCEEEecC--------ChhhHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHHhc-
Q 029759           73 TSVPVRVAHELLQA-----GHRYLDVR--------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR-  133 (188)
Q Consensus        73 ~~i~~~~~~~~l~~-----~~~iIDvR--------~~~ef~~ghIpgAinip~~~~~~-----~~~~~~~~~l~~~~~~-  133 (188)
                      ..|+++++.+++++     +.+|||||        ++.+|..||||||+|+|+.....     ...+.+.+.+...+.. 
T Consensus         8 ~~is~~~l~~~l~~~~~~~~~~liDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~l~~~~~~~~~~lp~~~~~~~~l~~l   87 (296)
T 1rhs_A            8 ALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGSL   87 (296)
T ss_dssp             SEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHHT
T ss_pred             ceeeHHHHHHHHhccccCCCeEEEEecccCcCCcchhhhHhhCcCCCCEEeCHHHhcCCCCCCCCCCCCHHHHHHHHHHc
Confidence            46899999999975     58999999        68999999999999999863322     1345566777776665 


Q ss_pred             -cCCCCcEEEEcCC--ChH-HHHHHHHHHHCCCCce-EecCcHHhhhhCCCcccccc
Q 029759          134 -FRKHDEIIVGCQS--GKR-SMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK  185 (188)
Q Consensus       134 -l~~~~~ivv~C~s--G~~-a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~  185 (188)
                       ++++++||+||.+  |.+ |.++++.|+.+||++| +|.||+.+|..+++|+++..
T Consensus        88 gi~~~~~vVvyc~~~~g~~~a~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~  144 (296)
T 1rhs_A           88 GISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEP  144 (296)
T ss_dssp             TCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCSC
T ss_pred             CCCCCCeEEEEcCCCCCcchHHHHHHHHHHcCCCcEEEcCCCHHHHHHcCCccccCC
Confidence             5788999999999  776 8899999999999998 79999999999999998763

>1uar_A Rhodanese; sulfurtransferase, riken structural genomics/PROT initiative, RSGI, structural genomics, transferase; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2

Probab=99.84  E-value=3.5e-21  Score=156.11  Aligned_cols=112  Identities=14%  Similarity=0.097  Sum_probs=94.9

Q ss_pred             ccCHHHHHHHHhC-CCEEEecC-ChhhHhcCCCCCeEEcCcccccC---CCCCCCHHHHHHHHhc--cCCCCcEEEEcCC
Q 029759           74 SVPVRVAHELLQA-GHRYLDVR-TPEEFSAGHATGAINVPYMYRVG---SGMTKNLKFVEEVSTR--FRKHDEIIVGCQS  146 (188)
Q Consensus        74 ~i~~~~~~~~l~~-~~~iIDvR-~~~ef~~ghIpgAinip~~~~~~---~~~~~~~~~l~~~~~~--l~~~~~ivv~C~s  146 (188)
                      .|+++++.+++++ +.+|||+| ++++|..||||||+|+|+...+.   .+.+.+.+.+...+..  ++++++||+||++
T Consensus         9 ~is~~~l~~~l~~~~~~liDvR~~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ivvyc~~   88 (285)
T 1uar_A            9 LVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVLYGDK   88 (285)
T ss_dssp             EECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEECHH
T ss_pred             eEcHHHHHHhcCCCCEEEEEcCCCcchhhcCcCCCCEECCchhhccCCcccCCCCHHHHHHHHHHcCCCCCCeEEEECCC
Confidence            6899999998875 58999999 78999999999999999863222   3455566667776665  5789999999999


Q ss_pred             Ch-HHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcccccc
Q 029759          147 GK-RSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK  185 (188)
Q Consensus       147 G~-~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~  185 (188)
                      |. +|.++++.|+.+||++| +|.||+.+|..+++|+++..
T Consensus        89 g~~~s~~a~~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~  129 (285)
T 1uar_A           89 NNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTTEV  129 (285)
T ss_dssp             HHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBCCC
T ss_pred             CCccHHHHHHHHHHcCCCCeEEecCCHHHHHHCCCcccCCC
Confidence            87 79999999999999998 79999999999999998743

>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell cycle phosphatase, dual specificity protein phosphatase; 1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A 2uzq_A

Probab=99.83  E-value=2.2e-20  Score=145.78  Aligned_cols=102  Identities=18%  Similarity=0.201  Sum_probs=84.2

Q ss_pred             CcccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHh---ccC--CCCc
Q 029759           72 PTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST---RFR--KHDE  139 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~-------~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~---~l~--~~~~  139 (188)
                      ...|+++++.+++++       +++|||||++.||..||||||+|+|+.           +.....+.   .++  ++++
T Consensus        43 ~~~Is~~el~~~l~~~~~~~~~~~~lIDvR~~~Ey~~gHIpGAinip~~-----------~l~~~~~~~~~~l~~~~d~~  111 (211)
T 1qb0_A           43 LKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLE-----------RDAESFLLKSPIAPCSLDKR  111 (211)
T ss_dssp             SCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHHHTTTCCCSSTTSE
T ss_pred             CCeeCHHHHHHHHhcccccCCCCEEEEECCCHHHHccCcCCCCEECCch-----------HHHHHhhhhhhhccccCCCC
Confidence            347999999999875       489999999999999999999999984           23332222   343  6788


Q ss_pred             E--EEEcC-CChHHHHHHHHHHH----------CCCCce-EecCcHHhhhhCCCccccc
Q 029759          140 I--IVGCQ-SGKRSMMAATDLLN----------AVSTHA-NYPSKPLTWFLSNQLLTEE  184 (188)
Q Consensus       140 i--vv~C~-sG~~a~~a~~~L~~----------~G~~~v-~l~GG~~~W~~~g~p~~~~  184 (188)
                      |  |+||. +|.+|..++..|..          +||++| +|.||+.+|..++.|+.+.
T Consensus       112 ivvVvyC~~sG~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~g~~~~~~  170 (211)
T 1qb0_A          112 VILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEP  170 (211)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEES
T ss_pred             eEEEEECCCCCccHHHHHHHHHhhhhhhhhhhhcCCCeEEEECCHHHHHHHHCccccCC
Confidence            7  78899 99999999999886          799988 7999999999998887553

>3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens}

Probab=99.83  E-value=2.9e-20  Score=152.38  Aligned_cols=116  Identities=16%  Similarity=0.076  Sum_probs=95.1

Q ss_pred             CCCcccCHHHHHHHHhC-----CCEEEecC---------ChhhHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHH
Q 029759           70 GVPTSVPVRVAHELLQA-----GHRYLDVR---------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEV  130 (188)
Q Consensus        70 ~~~~~i~~~~~~~~l~~-----~~~iIDvR---------~~~ef~~ghIpgAinip~~~~~~-----~~~~~~~~~l~~~  130 (188)
                      .....|+++++.+++++     +.+|||+|         +++||..||||||+|+|+.....     .+.+.+.+.+++.
T Consensus        19 ~~~~lIs~~~l~~~l~~~~~~~~~~ilDvR~~~~~~~~~~~~ey~~gHIpGAi~i~~~~~~~~~~~~~~~lp~~~~~~~~   98 (302)
T 3olh_A           19 YFQSMVSAQWVAEALRAPRAGQPLQLLDASWYLPKLGRDARREFEERHIPGAAFFDIDQCSDRTSPYDHMLPGAEHFAEY   98 (302)
T ss_dssp             -CCCEECHHHHHHHHHCCCSSCCEEEEECCCCCCC--CCHHHHHHHSCCTTCEECCTTTSSCSSCSSSSCCCCHHHHHHH
T ss_pred             CCCCccCHHHHHHHhcCcCCCCCEEEEEeecCCCccCcccHHHHhhCcCCCCeEeCHHHhcCcCCCCCCCCCCHHHHHHH
Confidence            34457999999999975     68999999         78999999999999999864221     2445566777777


Q ss_pred             Hhcc--CCCCcEEEEcCC---ChHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcccccc
Q 029759          131 STRF--RKHDEIIVGCQS---GKRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK  185 (188)
Q Consensus       131 ~~~l--~~~~~ivv~C~s---G~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~  185 (188)
                      +..+  +++++||+||.+   +.+|.++++.|+.+||++| +|.||+.+|..+|+|+++..
T Consensus        99 ~~~lgi~~~~~VVvyc~~~~g~~~a~ra~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~~  159 (302)
T 3olh_A           99 AGRLGVGAATHVVIYDASDQGLYSAPRVWWMFRAFGHHAVSLLDGGLRHWLRQNLPLSSGK  159 (302)
T ss_dssp             HHHTTCCSSCEEEEECCCTTSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHSCCC-CCSC
T ss_pred             HHHcCCCCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCcEEECCCCHHHHHHcCCCcccCC
Confidence            7664  788999999964   3569999999999999998 79999999999999998863

>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate trapping, active site mutant, hydrolase; 1.52A {Homo sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A 1cwt_A 2ifd_A

Probab=99.83  E-value=2.2e-20  Score=141.44  Aligned_cols=102  Identities=17%  Similarity=0.186  Sum_probs=80.9

Q ss_pred             CcccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc---cC--CCCc
Q 029759           72 PTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---FR--KHDE  139 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~-------~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~---l~--~~~~  139 (188)
                      ...|+++++.+++++       +++|||||++.||..||||||+|+|+.           +........   ++  ++++
T Consensus        23 ~~~is~~el~~~l~~~~~~~~~~~~liDvR~~~ey~~ghIpgAinip~~-----------~l~~~~~~~~~~~~~~~~~~   91 (175)
T 2a2k_A           23 LKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLE-----------RDAESFLLKSPIAPCSLDKR   91 (175)
T ss_dssp             SCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHHHSSCCCC----CE
T ss_pred             CceeCHHHHHHHHhcccccCCCCEEEEECCCHHHHcCCcCCCcEECChh-----------HHHHHhhhhhhhccccCCCC
Confidence            347999999999975       489999999999999999999999984           222322221   33  6788


Q ss_pred             EEE--EcC-CChHHHHHHHHHHH----------CCCCce-EecCcHHhhhhCCCccccc
Q 029759          140 IIV--GCQ-SGKRSMMAATDLLN----------AVSTHA-NYPSKPLTWFLSNQLLTEE  184 (188)
Q Consensus       140 ivv--~C~-sG~~a~~a~~~L~~----------~G~~~v-~l~GG~~~W~~~g~p~~~~  184 (188)
                      ||+  ||+ +|.+|..++..|+.          +||++| +|.||+.+|..++.|+.++
T Consensus        92 ivvv~yC~~~g~rs~~aa~~L~~~~~~~~~l~~~G~~~V~~L~GG~~~W~~~~~~~~~~  150 (175)
T 2a2k_A           92 VILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQHPNFCEP  150 (175)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTCGGGEES
T ss_pred             eEEEEECCCCCCccHHHHHHHHHhhhhhhhhhhcCCceEEEEcCCHHHHHHHCccccCC
Confidence            855  599 89999999999985          599988 7999999999998887543

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.83  E-value=8.4e-21  Score=149.60  Aligned_cols=142  Identities=21%  Similarity=0.173  Sum_probs=101.5

Q ss_pred             hhh-hhcccccccCCceeEEeecCCC-c---------ccccccccccccccc----cCC--------------CcccCHH
Q 029759           28 NNR-RGLLSLTVDQQRCDNIGFISSK-I---------LSFCPKASLRGNLEA----VGV--------------PTSVPVR   78 (188)
Q Consensus        28 ~~~-~~~~~~~~~~~~~~v~~~~~~~-~---------~~~~~~~~~~~~~~~----~~~--------------~~~i~~~   78 (188)
                      +.| +++..++.  .+.+|+|+..+. .         +++.++..++|+...    .+.              ...++++
T Consensus        49 ~~~~~~~~~l~~--~~~ivvyc~~g~~~s~~a~~~L~~G~~~v~~l~GGW~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~  126 (230)
T 2eg4_A           49 GGLTELFQTLGL--RSPVVLYDEGLTSRLCRTAFFLGLGGLEVQLWTEGWEPYATEKEEPKPERTEVVAKLRRDWLLTAD  126 (230)
T ss_dssp             HHHHHHHHHTTC--CSSEEEECSSSCHHHHHHHHHHHHTTCCEEEECSSCGGGCCBCSCCCCCCCCCCCCCCGGGBCCHH
T ss_pred             HHHHHHHHhcCC--CCEEEEEcCCCCccHHHHHHHHHcCCceEEEeCCCCccCcccCCCCCcccccceecCCccceeCHH
Confidence            456 55555554  556667765544 1         255556565554211    000              0136677


Q ss_pred             HHHHHHhCCCEEEecCChhhHhc----------CCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCCh
Q 029759           79 VAHELLQAGHRYLDVRTPEEFSA----------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (188)
Q Consensus        79 ~~~~~l~~~~~iIDvR~~~ef~~----------ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~  148 (188)
                      ++.+    +.+|||+|+++||..          ||||||+|+|+.+.....     +.+..  ..++++++||+||++|.
T Consensus       127 e~~~----~~~liDvR~~~e~~~~~~~~~~~~~ghIpgA~~ip~~~~~~~~-----e~~~~--~~~~~~~~iv~~C~~G~  195 (230)
T 2eg4_A          127 EAAR----HPLLLDVRSPEEFQGKVHPPCCPRGGRIPGSKNAPLELFLSPE-----GLLER--LGLQPGQEVGVYCHSGA  195 (230)
T ss_dssp             HHHT----CSCEEECSCHHHHTTSCCCTTSSSCCBCTTCEECCGGGGGCCT-----THHHH--HTCCTTCEEEEECSSSH
T ss_pred             HHhh----CCeEEeCCCHHHcCcccCCCCCccCCCCCCcEEcCHHHhCChH-----HHHHh--cCCCCCCCEEEEcCChH
Confidence            7665    689999999999998          999999999986443321     11211  13678999999999999


Q ss_pred             HHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcccc
Q 029759          149 RSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTE  183 (188)
Q Consensus       149 ~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~  183 (188)
                      +|+.++..|+.+| .++ +|.|||.+|..+++|+++
T Consensus       196 rs~~a~~~L~~~G-~~v~~~~Gg~~~W~~~g~p~~~  230 (230)
T 2eg4_A          196 RSAVAFFVLRSLG-VRARNYLGSMHEWLQEGLPTEP  230 (230)
T ss_dssp             HHHHHHHHHHHTT-CEEEECSSHHHHHHHTTCCCBC
T ss_pred             HHHHHHHHHHHcC-CCcEEecCcHHHHhhcCCCCCC
Confidence            9999999999999 888 799999999999999874

>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual specificity phosphatase, nucleus, cytoplasm, rhodanese domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A

Probab=99.83  E-value=5.2e-21  Score=141.80  Aligned_cols=112  Identities=14%  Similarity=0.051  Sum_probs=79.6

Q ss_pred             cccCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCeEEcCcccccC----CCCCCCHHHH-HHHHh--ccCCCCcEEE
Q 029759           73 TSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVG----SGMTKNLKFV-EEVST--RFRKHDEIIV  142 (188)
Q Consensus        73 ~~i~~~~~~~~l~~---~~~iIDvR~~~ef~~ghIpgAinip~~~~~~----~~~~~~~~~l-~~~~~--~l~~~~~ivv  142 (188)
                      ..|+++++.+++++   +.+|||+|++.||..||||||+|+|+.....    .+.....+.+ .....  .++++++||+
T Consensus         4 ~~Is~~~l~~~l~~~~~~~~iiDvR~~~ey~~gHIpgAinip~~~l~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~iVv   83 (153)
T 2vsw_A            4 TQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKVVV   83 (153)
T ss_dssp             EEECHHHHHHHHTSTTCCEEEEECSCHHHHHHCEETTCEECCCCHHHHHHHHTTSSCHHHHHHHSCSSCCCCCTTSEEEE
T ss_pred             ccccHHHHHHHHhcCCCCEEEEECCCHHHhccCccCCCeeeChHHHHHhhhhcCCcCHHHhcCchhhhhhccCCCCeEEE
Confidence            46899999999973   4899999999999999999999999852210    0111100111 00001  1467899999


Q ss_pred             EcCCChHHHHH------HHHHHH--CCCCce-EecCcHHhhhhCCCccccc
Q 029759          143 GCQSGKRSMMA------ATDLLN--AVSTHA-NYPSKPLTWFLSNQLLTEE  184 (188)
Q Consensus       143 ~C~sG~~a~~a------~~~L~~--~G~~~v-~l~GG~~~W~~~g~p~~~~  184 (188)
                      ||++|.++..+      ++.|+.  .||++| +|.||+.+|.....++.+.
T Consensus        84 yc~~g~~s~~a~~~~~~~~~L~~l~~G~~~v~~L~GG~~~W~~~~~~~~~~  134 (153)
T 2vsw_A           84 YDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPGLCEG  134 (153)
T ss_dssp             ECSSCCCGGGSCTTSHHHHHHHHHHHHCSCEEEETTHHHHHHHHCGGGEEC
T ss_pred             EeCCCCcccccccchHHHHHHHHHHhCCCcEEEEeChHHHHHHhChhhhcC
Confidence            99999887655      466663  399988 7999999998875555443

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.82  E-value=3.9e-20  Score=162.41  Aligned_cols=132  Identities=14%  Similarity=0.159  Sum_probs=107.0

Q ss_pred             CceeEEeecCCCcc----------cccccccccc-ccc---ccCC----------CcccCHHHHHHHHhC-CCEEEecCC
Q 029759           41 QRCDNIGFISSKIL----------SFCPKASLRG-NLE---AVGV----------PTSVPVRVAHELLQA-GHRYLDVRT   95 (188)
Q Consensus        41 ~~~~v~~~~~~~~~----------~~~~~~~~~~-~~~---~~~~----------~~~i~~~~~~~~l~~-~~~iIDvR~   95 (188)
                      .+.+|+|+..+...          ++ ++.+++| ++.   ..+.          ...++++++.+++++ +.+|||+|+
T Consensus       322 ~~~ivv~c~~g~rs~~aa~~L~~~G~-~v~~l~G~G~~~w~~~g~p~~~~~~~~~~~~i~~~~l~~~l~~~~~~liDvR~  400 (539)
T 1yt8_A          322 GARLVLVDDDGVRANMSASWLAQMGW-QVAVLDGLSEADFSERGAWSAPLPRQPRADTIDPTTLADWLGEPGTRVLDFTA  400 (539)
T ss_dssp             TCEEEEECSSSSHHHHHHHHHHHTTC-EEEEECSCCGGGCCBCSSCCCCCCCCCCCCEECHHHHHHHTTSTTEEEEECSC
T ss_pred             CCeEEEEeCCCCcHHHHHHHHHHcCC-eEEEecCCChHHHHHhhccccCCCCCCcCCccCHHHHHHHhcCCCeEEEEeCC
Confidence            45566665554322          66 6667777 651   2222          235899999999875 489999999


Q ss_pred             hhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhh
Q 029759           96 PEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTW  174 (188)
Q Consensus        96 ~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W  174 (188)
                      +.||..||||||+|+|..            .+...+..++++++||+||.+|.+|..++..|+.+||+++ +|.|||.+|
T Consensus       401 ~~e~~~ghIpgA~~ip~~------------~l~~~l~~l~~~~~ivv~C~sG~rs~~aa~~L~~~G~~~v~~l~GG~~~W  468 (539)
T 1yt8_A          401 SANYAKRHIPGAAWVLRS------------QLKQALERLGTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAW  468 (539)
T ss_dssp             HHHHHHCBCTTCEECCGG------------GHHHHHHHHCCCSEEEEECSSSHHHHHHHHHHHHHHCSCEEEETTHHHHH
T ss_pred             HHHhhcCcCCCchhCCHH------------HHHHHHHhCCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEeCCcHHHH
Confidence            999999999999999984            5666666678899999999999999999999999999988 899999999


Q ss_pred             hhCCCcccccc
Q 029759          175 FLSNQLLTEEK  185 (188)
Q Consensus       175 ~~~g~p~~~~~  185 (188)
                      ..+|+|+++..
T Consensus       469 ~~~g~pv~~~~  479 (539)
T 1yt8_A          469 VAAGLPTEDGE  479 (539)
T ss_dssp             HHTTCCCBCSS
T ss_pred             HhCCCCcccCC
Confidence            99999999853

>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase; 2.20A {Homo sapiens}

Probab=99.81  E-value=3.4e-20  Score=135.00  Aligned_cols=110  Identities=15%  Similarity=0.176  Sum_probs=76.4

Q ss_pred             ccCHHHHHH--------HHhC-CCEEEecCChhhHhcCCCCCeEEcCcccccCC-----CCCCCHHHHHH-----HHhcc
Q 029759           74 SVPVRVAHE--------LLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVGS-----GMTKNLKFVEE-----VSTRF  134 (188)
Q Consensus        74 ~i~~~~~~~--------~l~~-~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~-----~~~~~~~~l~~-----~~~~l  134 (188)
                      .|+++++.+        ++++ +.+|||+|+++||..||||||+|+|+......     +....++.+..     .....
T Consensus         2 ~Is~~~l~~~l~~~~~~~l~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (142)
T 2ouc_A            2 IIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFKRI   81 (142)
T ss_dssp             EECHHHHHHHHHC----------CEEEECSCHHHHHHEEETTCEECCCSSHHHHHHHHTTSSCHHHHHHTTSCTTHHHHH
T ss_pred             ccCHHHHHHHHHhcccccCCCCCCEEEEeCCHHHhhhhhccCccccCccHHHHHHHhhcCCcchhhhCCChhhhHHHhcc
Confidence            478889888        5543 48999999999999999999999998532210     11110111100     00000


Q ss_pred             CCCCcEEEEcCCChHH---------HHHHHHHHHCCCCce-EecCcHHhhhhCCCcccccc
Q 029759          135 RKHDEIIVGCQSGKRS---------MMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK  185 (188)
Q Consensus       135 ~~~~~ivv~C~sG~~a---------~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~  185 (188)
                       ++++||+||++|.++         ..++..|...|| ++ +|.||+.+|..++.++.+..
T Consensus        82 -~~~~ivvyc~~g~~~~~~~~~~~~~~~~~~L~~~G~-~v~~l~GG~~~w~~~g~~~~~~~  140 (142)
T 2ouc_A           82 -FSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGK-EPLVLKGGLSSFKQNHENLCDNS  140 (142)
T ss_dssp             -HHSCEEEECSSCCCGGGCCTTSHHHHHHHHHHHTTC-CCEEETTHHHHHTTTCGGGEEEC
T ss_pred             -CCCcEEEEECCCCchhhcCcccHHHHHHHHHHHcCC-cEEEEccCHHHHHHHCHHhhccc
Confidence             268899999999875         457788999999 77 79999999999998887643

>1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3

Probab=99.81  E-value=4.3e-20  Score=155.51  Aligned_cols=111  Identities=9%  Similarity=-0.059  Sum_probs=93.0

Q ss_pred             cccCHHHHHHHHhCCCEEEecCC--------hhhHhcCCCCCeEEcCcccccC--------CCCCCCHHHHHHHHhc--c
Q 029759           73 TSVPVRVAHELLQAGHRYLDVRT--------PEEFSAGHATGAINVPYMYRVG--------SGMTKNLKFVEEVSTR--F  134 (188)
Q Consensus        73 ~~i~~~~~~~~l~~~~~iIDvR~--------~~ef~~ghIpgAinip~~~~~~--------~~~~~~~~~l~~~~~~--l  134 (188)
                      ..|+++++.+++++ .+|||+|+        ++||..||||||+|+|+...+.        .+.+.+.+.+.+.+..  +
T Consensus        14 ~~Is~~el~~~l~~-~~iIDvR~~~~~~~~~~~ey~~gHIpGAi~ip~~~~l~~~~~~~~~~~~lp~~~~f~~~l~~~gi   92 (373)
T 1okg_A           14 VFLDPSEVADHLAE-YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPXAEFIDWCMANGM   92 (373)
T ss_dssp             CEECHHHHTTCGGG-SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHHTTC
T ss_pred             cEEcHHHHHHHcCC-cEEEEecCCccccccchhHHhhCcCCCCEEeCchhhhhcccccCCccccCCCHHHHHHHHHHcCC
Confidence            47999999998877 99999998        6999999999999999865232        2345566667666643  6


Q ss_pred             CCCCcEEEEc-CCChHHH-HHHHHHHHCCCCce-EecCcHHhhhhCCCcccccc
Q 029759          135 RKHDEIIVGC-QSGKRSM-MAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK  185 (188)
Q Consensus       135 ~~~~~ivv~C-~sG~~a~-~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~  185 (188)
                      +++++||+|| .+|.++. ++++.|+.+|| +| +|+||+.+|..+|+|+++..
T Consensus        93 ~~d~~VVvYc~~~G~rsa~ra~~~L~~~G~-~V~~L~GG~~aW~~~g~pv~~~~  145 (373)
T 1okg_A           93 AGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMESGE  145 (373)
T ss_dssp             SSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEECSC
T ss_pred             CCCCeEEEEeCCCCchHHHHHHHHHHHcCC-eEEEeCCCHHHHHhhcCCcccCC
Confidence            7899999999 7787876 99999999999 88 79999999999999998753

>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major}

Probab=99.81  E-value=8.6e-20  Score=135.47  Aligned_cols=103  Identities=16%  Similarity=0.142  Sum_probs=77.9

Q ss_pred             cccCHHHHHHHHhC-----CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc-CCC-CcEEEEc-
Q 029759           73 TSVPVRVAHELLQA-----GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKH-DEIIVGC-  144 (188)
Q Consensus        73 ~~i~~~~~~~~l~~-----~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l-~~~-~~ivv~C-  144 (188)
                      ..|+++++.+++++     +.+|||+|++ ||..||||||+|+|+....       ...+......+ +++ +.||+|| 
T Consensus         5 ~~Is~~el~~~l~~~~~~~~~~lIDvR~~-ey~~gHIpGAinip~~~l~-------~~~~~~l~~~l~~~~~~~vV~yC~   76 (152)
T 2j6p_A            5 TYIKPEELVELLDNPDSLVKAAVIDCRDS-DRDCGFIVNSINMPTISCT-------EEMYEKLAKTLFEEKKELAVFHCA   76 (152)
T ss_dssp             EEECHHHHHHHHHSHHHHHTEEEEECCST-TGGGCBCTTCEECCTTTCC-------HHHHHHHHHHHHHTTCCEEEEECS
T ss_pred             CccCHHHHHHHHhCCCCCCCEEEEEcCcH-HhCcCcCCCcEECChhHhh-------HHHHHHHHHHhcccCCCEEEEEcC
Confidence            36899999999876     6899999999 9999999999999985211       11222222222 134 4577789 


Q ss_pred             CCChHHHHHH----HHHHHCCC--Cce-EecCcHHhhhhCCCcccc
Q 029759          145 QSGKRSMMAA----TDLLNAVS--THA-NYPSKPLTWFLSNQLLTE  183 (188)
Q Consensus       145 ~sG~~a~~a~----~~L~~~G~--~~v-~l~GG~~~W~~~g~p~~~  183 (188)
                      .+|.++..++    +.|...||  .++ +|.||+.+|..++.++..
T Consensus        77 ~sg~rs~~aa~~~~~~L~~~G~~~~~v~~L~GG~~~W~~~g~~~~~  122 (152)
T 2j6p_A           77 QSLVRAPKGANRFALAQKKLGYVLPAVYVLRGGWEAFYHMYGDVRP  122 (152)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHTCCCSEEEEETTHHHHHHHHHTTTCG
T ss_pred             CCCCccHHHHHHHHHHHHHcCCCCCCEEEEcCcHHHHHHHcCCCCC
Confidence            7899998887    77888998  478 699999999988776654

>3op3_A M-phase inducer phosphatase 3; structural genomics, structural genomics consortium, SGC, Al alpha sandwich, kinase, cytosol, hydrolase; 2.63A {Homo sapiens}

Probab=99.81  E-value=1.2e-19  Score=142.05  Aligned_cols=96  Identities=19%  Similarity=0.200  Sum_probs=77.5

Q ss_pred             CcccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc---c--CCCC-
Q 029759           72 PTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR---F--RKHD-  138 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~-------~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~---l--~~~~-  138 (188)
                      ...|+++++.+++++       +++|||||.+.||..||||||+|+|+.           +.+...+..   +  ++++ 
T Consensus        56 ~~~Is~~eL~~~l~~~~~~~~~~~~lIDVR~~~Ey~~GHIpGAinIP~~-----------~~l~~~l~~~~~~~~~~~k~  124 (216)
T 3op3_A           56 LKYVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYSQ-----------EELFNFFLKKPIVPLDTQKR  124 (216)
T ss_dssp             SEEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTSEETTCEECCSH-----------HHHHHHHTSSCCCCSSTTSE
T ss_pred             CCEeCHHHHHHHHhCCCccccCCEEEEEeCcHHHHhcCCccCCEECChH-----------HHHHHHHhhccccccccCCC
Confidence            457999999999975       379999999999999999999999984           345444321   2  2344 


Q ss_pred             -cEEEEcC-CChHHHHHHHHHHHC----------CCCce-EecCcHHhhhhCC
Q 029759          139 -EIIVGCQ-SGKRSMMAATDLLNA----------VSTHA-NYPSKPLTWFLSN  178 (188)
Q Consensus       139 -~ivv~C~-sG~~a~~a~~~L~~~----------G~~~v-~l~GG~~~W~~~g  178 (188)
                       +||+||. +|.||..++..|...          ||++| +|.||+.+|..+.
T Consensus       125 ~~VVvyC~~SG~Rs~~aa~~L~~~~~~~~~y~~lGf~~V~~L~GG~~aW~~~~  177 (216)
T 3op3_A          125 IIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPELYILKGGYRDFFPEY  177 (216)
T ss_dssp             EEEEEECCC--CCHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTTC
T ss_pred             CEEEEEeCCCChHHHHHHHHHHHcCcccccccccCCCcEEEECCcHHHHHHhC
Confidence             4999999 999999999999876          89998 7999999998863

>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}

Probab=99.81  E-value=6.2e-20  Score=147.59  Aligned_cols=101  Identities=20%  Similarity=0.161  Sum_probs=82.3

Q ss_pred             CcccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHH
Q 029759           72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a  150 (188)
                      ...++++++.++++++ .+|||+|++.||..||||||+|+|+....+     .++.+..... .+++++||+||.+|.+|
T Consensus       121 ~~~Is~~el~~ll~~~~~vlIDVR~~~Ey~~GHIpGAiniP~~~~~~-----~~~~l~~~l~-~~kdk~IVvyC~~G~RS  194 (265)
T 4f67_A          121 GTYLSPEEWHQFIQDPNVILLDTRNDYEYELGTFKNAINPDIENFRE-----FPDYVQRNLI-DKKDKKIAMFCTGGIRC  194 (265)
T ss_dssp             TCEECHHHHHHHTTCTTSEEEECSCHHHHHHEEETTCBCCCCSSGGG-----HHHHHHHHTG-GGTTSCEEEECSSSHHH
T ss_pred             CceECHHHHHHHhcCCCeEEEEeCCchHhhcCcCCCCEeCCHHHHHh-----hHHHHHHhhh-hCCCCeEEEEeCCChHH
Confidence            4479999999999764 999999999999999999999999852110     1112222221 36789999999999999


Q ss_pred             HHHHHHHHHCCCCce-EecCcHHhhhhCC
Q 029759          151 MMAATDLLNAVSTHA-NYPSKPLTWFLSN  178 (188)
Q Consensus       151 ~~a~~~L~~~G~~~v-~l~GG~~~W~~~g  178 (188)
                      ..+++.|...||++| .|.||+.+|.++-
T Consensus       195 ~~Aa~~L~~~Gf~nV~~L~GGi~aW~~~~  223 (265)
T 4f67_A          195 EKTTAYMKELGFEHVYQLHDGILNYLESI  223 (265)
T ss_dssp             HHHHHHHHHHTCSSEEEETTHHHHHHHHS
T ss_pred             HHHHHHHHHcCCCCEEEecCHHHHHHHhc
Confidence            999999999999998 7999999998763

>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide detoxification, structural genomics, PSI, protein structure initiative; 1.90A {Pseudomonas aeruginosa} SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2

Probab=99.80  E-value=2e-19  Score=157.95  Aligned_cols=100  Identities=20%  Similarity=0.124  Sum_probs=87.3

Q ss_pred             cccCHHHHHHHHhC--CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc--CCCCcEEEEcCCCh
Q 029759           73 TSVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQSGK  148 (188)
Q Consensus        73 ~~i~~~~~~~~l~~--~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l--~~~~~ivv~C~sG~  148 (188)
                      ..|+++++.+++++  +.+|||+|++.||..||||||+|+|+.            .+...+..+  +++++||+||.+|.
T Consensus         7 ~~is~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAv~ip~~------------~~~~~~~~l~~~~~~~iVvyc~~g~   74 (539)
T 1yt8_A            7 AVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLS------------RLELEIHARVPRRDTPITVYDDGEG   74 (539)
T ss_dssp             EEECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGG------------GHHHHHHHHSCCTTSCEEEECSSSS
T ss_pred             cccCHHHHHHHHhCCCCeEEEECCCHHHHhcCcCCCCEECCHH------------HHHHHHHhhCCCCCCeEEEEECCCC
Confidence            46899999999864  589999999999999999999999984            344433332  46899999999999


Q ss_pred             HHHHHHHHHHHCCCCce-EecCcHHhhhhCCCccccc
Q 029759          149 RSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEE  184 (188)
Q Consensus       149 ~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~  184 (188)
                      +|.++++.|+.+||++| +|.||+.+|..+|+|++++
T Consensus        75 ~s~~a~~~L~~~G~~~V~~L~GG~~~W~~~g~p~~~~  111 (539)
T 1yt8_A           75 LAPVAAQRLHDLGYSDVALLDGGLSGWRNAGGELFRD  111 (539)
T ss_dssp             HHHHHHHHHHHTTCSSEEEETTHHHHHHHTTCCCBCS
T ss_pred             hHHHHHHHHHHcCCCceEEeCCCHHHHHhcCCCcccC
Confidence            99999999999999999 7999999999999999765

>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo sapiens} SCOP: c.46.1.1

Probab=99.79  E-value=5.1e-20  Score=136.39  Aligned_cols=103  Identities=17%  Similarity=0.050  Sum_probs=76.7

Q ss_pred             cccCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCeEEcCccccc----CC------CCCCCHHHHHHHHhccCCCCc
Q 029759           73 TSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRV----GS------GMTKNLKFVEEVSTRFRKHDE  139 (188)
Q Consensus        73 ~~i~~~~~~~~l~~---~~~iIDvR~~~ef~~ghIpgAinip~~~~~----~~------~~~~~~~~l~~~~~~l~~~~~  139 (188)
                      ..|+++++.+++++   +.+|||+|++.||..||||||+|+|+....    ..      ..+.+. .....+..++++++
T Consensus        16 ~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHIpgAinip~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~   94 (154)
T 1hzm_A           16 ISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRG-EDRDRFTRRCGTDT   94 (154)
T ss_dssp             SBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTTS-HHHHHHHHSTTSSC
T ss_pred             cccCHHHHHHHHhCCCCCEEEEEcCCHHHHhhccccCceEeCccHHHHhhhhcCcccHHHhCCCH-HHHHHHhccCCCCe
Confidence            46788888888764   589999999999999999999999986422    11      122222 22334445678899


Q ss_pred             EEEEcCCChHH-------HHHHHHHHHC---CCCce-EecCcHHhhhhC
Q 029759          140 IIVGCQSGKRS-------MMAATDLLNA---VSTHA-NYPSKPLTWFLS  177 (188)
Q Consensus       140 ivv~C~sG~~a-------~~a~~~L~~~---G~~~v-~l~GG~~~W~~~  177 (188)
                      ||+||++|.++       ..+++.|+.+   ||+ + +|.||+.+|...
T Consensus        95 iVvyc~~g~~~~~~~~aa~~~~~~l~~l~~~G~~-v~~L~GG~~~W~~~  142 (154)
T 1hzm_A           95 VVLYDESSSDWNENTGGESLLGLLLKKLKDEGCR-AFYLEGGFSKFQAE  142 (154)
T ss_dssp             EEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCC-CEECCCCHHHHHHH
T ss_pred             EEEEeCCCCccccccccchHHHHHHHHHHHCCCc-eEEEcChHHHHHHH
Confidence            99999998764       4456666654   999 7 799999999875

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=99.78  E-value=1.9e-19  Score=158.96  Aligned_cols=92  Identities=23%  Similarity=0.338  Sum_probs=84.1

Q ss_pred             cccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHH
Q 029759           73 TSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMM  152 (188)
Q Consensus        73 ~~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~  152 (188)
                      ..++++++.++++++.+|||+|+++||..||||||+|+|+            +.+...+..++++++||+||.+|.||..
T Consensus       489 ~~i~~~~~~~~~~~~~~~iDvR~~~e~~~ghi~ga~~ip~------------~~l~~~~~~l~~~~~iv~~C~~g~rs~~  556 (588)
T 3ics_A          489 DTVQWHEIDRIVENGGYLIDVREPNELKQGMIKGSINIPL------------DELRDRLEEVPVDKDIYITCQLGMRGYV  556 (588)
T ss_dssp             CEECTTTHHHHHHTTCEEEECSCGGGGGGCBCTTEEECCH------------HHHTTCGGGSCSSSCEEEECSSSHHHHH
T ss_pred             ceecHHHHHHHhcCCCEEEEcCCHHHHhcCCCCCCEECCH------------HHHHHHHhhCCCCCeEEEECCCCcHHHH
Confidence            3589999999998889999999999999999999999998            4666666678899999999999999999


Q ss_pred             HHHHHHHCCCCce-EecCcHHhhhhC
Q 029759          153 AATDLLNAVSTHA-NYPSKPLTWFLS  177 (188)
Q Consensus       153 a~~~L~~~G~~~v-~l~GG~~~W~~~  177 (188)
                      +++.|+..||+ + +|.|||.+|.+.
T Consensus       557 a~~~l~~~G~~-v~~l~GG~~~w~~~  581 (588)
T 3ics_A          557 AARMLMEKGYK-VKNVDGGFKLYGTV  581 (588)
T ss_dssp             HHHHHHHTTCC-EEEETTHHHHHHHH
T ss_pred             HHHHHHHcCCc-EEEEcchHHHHHhh
Confidence            99999999999 7 799999999876

>3f4a_A Uncharacterized protein YGR203W; protein phosphatase, rhodanese-like family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.80A {Saccharomyces cerevisiae} PDB: 3fs5_A*

Probab=99.77  E-value=1.3e-19  Score=136.97  Aligned_cols=105  Identities=18%  Similarity=0.205  Sum_probs=76.4

Q ss_pred             cccCHHHHHHHHhC--------CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc-----C--CC
Q 029759           73 TSVPVRVAHELLQA--------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-----R--KH  137 (188)
Q Consensus        73 ~~i~~~~~~~~l~~--------~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l-----~--~~  137 (188)
                      ..|+++++.+++++        +++|||||+ .||..||||||+|+|+.+...     ....+.++...+     +  .+
T Consensus        31 ~~Is~~eL~~~l~~~~~~~~~~~~~iIDVR~-~Ey~~GHIpGAiniP~~~l~~-----~~~~l~~l~~~~~~~~~~~~~~  104 (169)
T 3f4a_A           31 KYLDPTELHRWMQEGHTTTLREPFQVVDVRG-SDYMGGHIKDGWHYAYSRLKQ-----DPEYLRELKHRLLEKQADGRGA  104 (169)
T ss_dssp             EEECHHHHHHHHHHTSCTTTCCCEEEEECCS-TTCTTCEETTCEECCHHHHHH-----CHHHHHHHHHHHHHHHHTSSSC
T ss_pred             cEeCHHHHHHHHhcCCccCcCCCEEEEECCc-hHHccCcCCCCEECCHHHhhc-----ccccHHHHHHHHHhhcccccCC
Confidence            36999999999864        389999999 999999999999999852111     101122222211     1  13


Q ss_pred             CcEEEEcCCC-hHHHHHHHHHHH----CC--CCce-EecCcHHhhhhCCCcccc
Q 029759          138 DEIIVGCQSG-KRSMMAATDLLN----AV--STHA-NYPSKPLTWFLSNQLLTE  183 (188)
Q Consensus       138 ~~ivv~C~sG-~~a~~a~~~L~~----~G--~~~v-~l~GG~~~W~~~g~p~~~  183 (188)
                      ++||+||.+| .|+..++.+|..    .|  +.+| +|.||+.+|..++.|.+.
T Consensus       105 ~~IVvyC~sG~~Rs~~aa~~l~~~L~~~G~~~~~V~~L~GG~~aW~~~~~~~~~  158 (169)
T 3f4a_A          105 LNVIFHCMLSQQRGPSAAMLLLRSLDTAELSRCRLWVLRGGFSRWQSVYGDDES  158 (169)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHTCCHHHHTTEEEEEETTHHHHHHHHHTTCTT
T ss_pred             CeEEEEeCCCCCcHHHHHHHHHHHHHHcCCCCCCEEEECCCHHHHHHHcCCccc
Confidence            7999999987 888888877654    36  5677 799999999998666543

>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}

Probab=99.76  E-value=3.1e-18  Score=127.70  Aligned_cols=106  Identities=14%  Similarity=0.123  Sum_probs=76.3

Q ss_pred             CcccCHHHHHHHHhC---------CCEEEecCChhhHhcCCCCCeEEcCccccc-----CCCCCCCHHHHHHH--Hhcc-
Q 029759           72 PTSVPVRVAHELLQA---------GHRYLDVRTPEEFSAGHATGAINVPYMYRV-----GSGMTKNLKFVEEV--STRF-  134 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~---------~~~iIDvR~~~ef~~ghIpgAinip~~~~~-----~~~~~~~~~~l~~~--~~~l-  134 (188)
                      ...|+++++.++++.         +.+|||+|++.||..||||||+|+|+...+     ..+.....+.+...  ...+ 
T Consensus        10 ~~~is~~el~~~l~~~~~~~~~~~~~~liDvR~~~e~~~ghI~ga~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (158)
T 3tg1_B           10 IKIIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISCREGKDSFK   89 (158)
T ss_dssp             -CEECHHHHHHHHCC----------CEEEECSCHHHHHHCCBTTCEECCCSSHHHHHHHTTSSCCHHHHTCCCCSSCSST
T ss_pred             CcEecHHHHHHHHHhcccccCCCCCEEEEEcCCHHHHHhCCCCCceeechhHHHHHhhhhcCcccHHhhcCCHHHHHHHh
Confidence            346899999999872         489999999999999999999999986322     11111000000000  0001 


Q ss_pred             -CCCCcEEEEcCCC---------hHHHHHHHHHHHCCCCceEecCcHHhhhhC
Q 029759          135 -RKHDEIIVGCQSG---------KRSMMAATDLLNAVSTHANYPSKPLTWFLS  177 (188)
Q Consensus       135 -~~~~~ivv~C~sG---------~~a~~a~~~L~~~G~~~v~l~GG~~~W~~~  177 (188)
                       .++++||+||.+|         .+|..++..|...||+.++|.|||.+|...
T Consensus        90 ~~~~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~~W~~~  142 (158)
T 3tg1_B           90 RIFSKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLSSFKQN  142 (158)
T ss_dssp             TTTTSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHHHHTSS
T ss_pred             ccCCCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHHHHHHH
Confidence             2478999999999         469999999999999644899999999765

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.76  E-value=3.9e-20  Score=159.81  Aligned_cols=135  Identities=24%  Similarity=0.185  Sum_probs=20.2

Q ss_pred             cCCCchhh-hhcccccccCCceeEEeecCCC---------ccccccccc-ccccccccCCCcccCHHHHHHHHhC-CCEE
Q 029759           23 LCPHGNNR-RGLLSLTVDQQRCDNIGFISSK---------ILSFCPKAS-LRGNLEAVGVPTSVPVRVAHELLQA-GHRY   90 (188)
Q Consensus        23 ~~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~l~~-~~~i   90 (188)
                      ..|....| .|...+ .+.++.+|+|+....         ..++.++.. +++.... ... .+    +.+++++ +.+|
T Consensus       318 ~ip~~~~~~~~~~~~-~~~~~~vvly~~~~~a~~a~~~L~~~G~~~v~~~l~g~~~~-~~~-~~----~~~~~~~~~~~l  390 (466)
T 3r2u_A          318 NIPYDKNFINQIGWY-LNYDQEINLIGDYHLVSKATHTLQLIGYDDIAGYQLPQSKI-QTR-SI----HSEDITGNESHI  390 (466)
T ss_dssp             ECCSSTTHHHHHTTT-CCTTSCEEEESCHHHHHHHHHHHHTTTCCCEEEEECCC--------------------------
T ss_pred             ECCccHHHHHHHHhc-cCCCCeEEEEECCchHHHHHHHhhhhhcccccccccCcccc-cHH-HH----HHHHHhCCCcEE
Confidence            34555567 444433 366777777765221         124444433 2222110 000 11    4555544 4899


Q ss_pred             EecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHHHHHHHHCCCCce-EecC
Q 029759           91 LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPS  169 (188)
Q Consensus        91 IDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~G  169 (188)
                      ||+|+++||..||||||+|+|+.            .+...+..++++++||+||++|.||+.+++.|+.+||+++ +|.|
T Consensus       391 iDvR~~~e~~~ghIpgA~~ip~~------------~l~~~~~~l~~~~~iv~~C~~G~rs~~a~~~L~~~G~~~v~~l~G  458 (466)
T 3r2u_A          391 LDVRNDNEWNNGHLSQAVHVPHG------------KLLETDLPFNKNDVIYVHCQSGIRSSIAIGILEHKGYHNIINVNE  458 (466)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEeCCHHHHhcCcCCCCEECCHH------------HHHHHHhhCCCCCeEEEECCCChHHHHHHHHHHHcCCCCEEEecC
Confidence            99999999999999999999984            4555666688899999999999999999999999999988 7999


Q ss_pred             cHHhhhh
Q 029759          170 KPLTWFL  176 (188)
Q Consensus       170 G~~~W~~  176 (188)
                      ||.+|.+
T Consensus       459 G~~~W~~  465 (466)
T 3r2u_A          459 GYKDIQL  465 (466)
T ss_dssp             -------
T ss_pred             hHHHHhh
Confidence            9999974

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=99.74  E-value=6.6e-19  Score=154.53  Aligned_cols=90  Identities=28%  Similarity=0.349  Sum_probs=77.1

Q ss_pred             cCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHHHHH
Q 029759           75 VPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSMMAA  154 (188)
Q Consensus        75 i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~~a~  154 (188)
                      ++++++.++ .++.+|||+|+++||..+|||||+|+|+.            .+...+..++++++||+||.+|.||..++
T Consensus       475 i~~~~~~~~-~~~~~~iDvR~~~e~~~~~i~ga~~ip~~------------~l~~~~~~~~~~~~iv~~c~~g~rs~~a~  541 (565)
T 3ntd_A          475 IHFDQIDNL-SEDQLLLDVRNPGELQNGGLEGAVNIPVD------------ELRDRMHELPKDKEIIIFSQVGLRGNVAY  541 (565)
T ss_dssp             ECTTTTTSC-CTTEEEEECSCGGGGGGCCCTTCEECCGG------------GTTTSGGGSCTTSEEEEECSSSHHHHHHH
T ss_pred             eeHHHHHhC-CCCcEEEEeCCHHHHhcCCCCCcEECCHH------------HHHHHHhhcCCcCeEEEEeCCchHHHHHH
Confidence            566665555 44589999999999999999999999984            44445556889999999999999999999


Q ss_pred             HHHHHCCCCce-EecCcHHhhhhCC
Q 029759          155 TDLLNAVSTHA-NYPSKPLTWFLSN  178 (188)
Q Consensus       155 ~~L~~~G~~~v-~l~GG~~~W~~~g  178 (188)
                      +.|+..|| ++ +|.||+.+|..+|
T Consensus       542 ~~l~~~G~-~v~~l~gG~~~w~~~g  565 (565)
T 3ntd_A          542 RQLVNNGY-RARNLIGGYRTYKFAS  565 (565)
T ss_dssp             HHHHHTTC-CEEEETTHHHHHHHTC
T ss_pred             HHHHHcCC-CEEEEcChHHHHHhCc
Confidence            99999999 87 7999999998764

>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A

Probab=99.73  E-value=2.2e-18  Score=135.73  Aligned_cols=92  Identities=14%  Similarity=0.055  Sum_probs=72.4

Q ss_pred             CCEEEecCChhhHhcCCCCCeEEcCcc--cccCC---CCCCCHHHHHHHHhccCCCCcEEEEcCCCh-HHHHHHHHHHHC
Q 029759           87 GHRYLDVRTPEEFSAGHATGAINVPYM--YRVGS---GMTKNLKFVEEVSTRFRKHDEIIVGCQSGK-RSMMAATDLLNA  160 (188)
Q Consensus        87 ~~~iIDvR~~~ef~~ghIpgAinip~~--~~~~~---~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~-~a~~a~~~L~~~  160 (188)
                      +.+|||+|++++|..||||||+|+|+.  +....   +++.+.+.+...+..++.+++||+||.+|. +|.++++.|+ +
T Consensus         6 ~~~iiDvR~~~ey~~ghIpgAi~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ivvyc~~g~~~s~~a~~~L~-~   84 (230)
T 2eg4_A            6 DAVLVDTRPRPAYEAGHLPGARHLDLSAPKLRLREEAELKALEGGLTELFQTLGLRSPVVLYDEGLTSRLCRTAFFLG-L   84 (230)
T ss_dssp             TCEEEECSCHHHHHHCBCTTCEECCCCSCCCCCCSHHHHHHHHHHHHHHHHHTTCCSSEEEECSSSCHHHHHHHHHHH-H
T ss_pred             CEEEEECCChhhHhhCcCCCCEECCccchhcccCCCCCcCCCHHHHHHHHHhcCCCCEEEEEcCCCCccHHHHHHHHH-c
Confidence            489999999999999999999999985  32210   111223456666666666899999999988 9999999999 9


Q ss_pred             CCCce-EecCcHHhhhhCCCccccc
Q 029759          161 VSTHA-NYPSKPLTWFLSNQLLTEE  184 (188)
Q Consensus       161 G~~~v-~l~GG~~~W~~~g~p~~~~  184 (188)
                      ||+++ +|+||   |..  +|+++.
T Consensus        85 G~~~v~~l~GG---W~~--~p~~~~  104 (230)
T 2eg4_A           85 GGLEVQLWTEG---WEP--YATEKE  104 (230)
T ss_dssp             TTCCEEEECSS---CGG--GCCBCS
T ss_pred             CCceEEEeCCC---Ccc--CcccCC
Confidence            99998 79999   866  777553

>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.70A {Alicyclobacillus acidocaldarius subsp}

Probab=99.70  E-value=1.3e-17  Score=144.11  Aligned_cols=101  Identities=15%  Similarity=0.167  Sum_probs=83.3

Q ss_pred             CcccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHH
Q 029759           72 PTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  151 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~  151 (188)
                      +..++++++.++++++ +|||+|++++|..||||||+|+|+.          ..+.+...+..+++++||+||++|. +.
T Consensus       272 ~~~is~~~l~~~l~~~-~iiD~R~~~~y~~ghIpGA~~i~~~----------~~~~~~~~~l~~~~~~vvvy~~~~~-~~  339 (474)
T 3tp9_A          272 RVDLPPERVRAWREGG-VVLDVRPADAFAKRHLAGSLNIPWN----------KSFVTWAGWLLPADRPIHLLAADAI-AP  339 (474)
T ss_dssp             ECCCCGGGHHHHHHTS-EEEECSCHHHHHHSEETTCEECCSS----------TTHHHHHHHHCCSSSCEEEECCTTT-HH
T ss_pred             CceeCHHHHHHHhCCC-EEEECCChHHHhccCCCCeEEECcc----------hHHHHHHHhcCCCCCeEEEEECCCc-HH
Confidence            4479999999999887 9999999999999999999999984          1233333333467899999999876 66


Q ss_pred             HHHHHHHHCCCCce-EecCcHHhhhhCCCccccc
Q 029759          152 MAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEE  184 (188)
Q Consensus       152 ~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~  184 (188)
                      ++++.|+.+||+++ .|.+|+.+|..++.++...
T Consensus       340 ~~~~~L~~~G~~~v~~~l~G~~~W~~~g~~~~~~  373 (474)
T 3tp9_A          340 DVIRALRSIGIDDVVDWTDPAAVDRAAPDDVASY  373 (474)
T ss_dssp             HHHHHHHHTTCCCEEEEECGGGGTTCCGGGEECC
T ss_pred             HHHHHHHHcCCcceEEecCcHHHHHhcccccccc
Confidence            79999999999998 5566999999988887654

>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken structural genomics/proteomics initiative, RSGI, hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4

Probab=99.68  E-value=1.6e-16  Score=118.35  Aligned_cols=110  Identities=8%  Similarity=0.114  Sum_probs=75.0

Q ss_pred             CcccCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHH--------HHHHhccCCCCcE
Q 029759           72 PTSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFV--------EEVSTRFRKHDEI  140 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~---~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l--------~~~~~~l~~~~~i  140 (188)
                      ...|+++++.+++++   +.+|||||+++||+.||||||+|||+.. +..+.  ..+.+        ...+....+.+.|
T Consensus        14 ~~~i~~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gainip~~~-~~~~~--~~~~l~~~lp~~~~~~~~~~~~~~~V   90 (157)
T 1whb_A           14 KGAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEA-ISPGV--TASWIEAHLPDDSKDTWKKRGNVEYV   90 (157)
T ss_dssp             CSEECHHHHHHHHTCSSSCEEEEEESCHHHHHHCCBTTCEEECSSS-CCTTC--CHHHHHHSCCTTHHHHHHGGGTSSEE
T ss_pred             CCccCHHHHHHHHhcCCCCeEEEECCCHHHHHhccccCCcccCHHH-ccCCC--cHHHHHHHCChHHHHHHHhcCCCCEE
Confidence            346899999999864   5899999999999999999999999853 22111  01111        1222222234559


Q ss_pred             EEEcCCChH----HHHHHHHHHH----C----CCCc-e-EecCcHHhhhhCCCcccccc
Q 029759          141 IVGCQSGKR----SMMAATDLLN----A----VSTH-A-NYPSKPLTWFLSNQLLTEEK  185 (188)
Q Consensus       141 vv~C~sG~~----a~~a~~~L~~----~----G~~~-v-~l~GG~~~W~~~g~p~~~~~  185 (188)
                      |+||.++.+    +..+++.|..    .    ||.+ | +|.||+.+|... +|...+.
T Consensus        91 Vvy~~~~~~~~~~a~~~~~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~~~~  148 (157)
T 1whb_A           91 VLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQYTTN  148 (157)
T ss_dssp             EEECSSCCGGGCCTTCHHHHHHHTTTTTCSSCCCSSCCEEESSCHHHHHHH-CGGGBSC
T ss_pred             EEECCCCCccccccccHHHHHHHHHHHhccccccCCCeEEEcchHHHHHHH-ChhhhCC
Confidence            999987743    3556666662    2    4543 6 799999999985 7776654

>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex, E3 ligase, protein ubiquitination, hydrolase, protease, UBL conjugation pathway; 2.30A {Homo sapiens} SCOP: c.46.1.4

Probab=99.67  E-value=1.7e-16  Score=118.28  Aligned_cols=110  Identities=8%  Similarity=0.068  Sum_probs=74.5

Q ss_pred             cccCHHHHHHHHhC---CCEEEecCChhhHhcCCCCCeEEcCcccccCCCC-------CCCHHHHHHHHhccCCCCcEEE
Q 029759           73 TSVPVRVAHELLQA---GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGM-------TKNLKFVEEVSTRFRKHDEIIV  142 (188)
Q Consensus        73 ~~i~~~~~~~~l~~---~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~-------~~~~~~l~~~~~~l~~~~~ivv  142 (188)
                      ..|+++++.+++++   +.+|||||+++||+.||||||+|||+.. +..+.       ..+ +.....+....+.+.||+
T Consensus        20 ~~is~~~l~~~l~~~~~~~~liDvR~~~ey~~gHI~gAinip~~~-l~~~~~~~~l~~~lp-~~~~~l~~~~~~~~~VVv   97 (157)
T 2gwf_A           20 GAITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEA-ISPGVTASWIEAHLP-DDSKDTWKKRGNVEYVVL   97 (157)
T ss_dssp             CEECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGG-CCTTCCHHHHHHTSC-HHHHHHHHTTTTSSEEEE
T ss_pred             CccCHHHHHHHHhcCCCCeEEEECCCHHHHHhcCccCCcccCHHH-cCCCCcHHHHHHHcC-HHHHHHHHhcCCCCEEEE
Confidence            46999999999874   5899999999999999999999999853 22211       011 112223333334456899


Q ss_pred             EcCCChH----HHHHHHHHH----HC----CCCc-e-EecCcHHhhhhCCCcccccc
Q 029759          143 GCQSGKR----SMMAATDLL----NA----VSTH-A-NYPSKPLTWFLSNQLLTEEK  185 (188)
Q Consensus       143 ~C~sG~~----a~~a~~~L~----~~----G~~~-v-~l~GG~~~W~~~g~p~~~~~  185 (188)
                      ||.+|.+    +..+++.|.    ..    |+.+ | +|.||+.+|... +|.....
T Consensus        98 y~~~~~~~~~~a~~~l~~L~~~L~~~~~~~~~~~~V~~L~GG~~aW~~~-~p~~~~~  153 (157)
T 2gwf_A           98 LDWFSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC-YPQYTTN  153 (157)
T ss_dssp             ECSSCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH-CGGGBSC
T ss_pred             EcCCCCccccCcccHHHHHHHHHHhhccccccCCceEEEccHHHHHHHH-ChhhcCC
Confidence            9987743    344555554    32    4543 6 799999999884 7776544

>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}

Probab=99.66  E-value=4.9e-16  Score=128.49  Aligned_cols=112  Identities=13%  Similarity=0.022  Sum_probs=91.0

Q ss_pred             cccCHHHHHHHHhCC----CEEEecC--------C-hhhH-hcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHHhc
Q 029759           73 TSVPVRVAHELLQAG----HRYLDVR--------T-PEEF-SAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR  133 (188)
Q Consensus        73 ~~i~~~~~~~~l~~~----~~iIDvR--------~-~~ef-~~ghIpgAinip~~~~~~-----~~~~~~~~~l~~~~~~  133 (188)
                      ..|+++++.++++.+    +++||++        . ..|| ++||||||++++++...+     ..++.+++.+++.+..
T Consensus        28 ~LIsp~~l~~ll~~~~~~rvv~lDasw~lP~~~r~~~~E~~~~~HIPGAv~~Dld~~~d~~~~~ph~LP~~~~f~~~l~~  107 (327)
T 3utn_X           28 DLISPKAFVKLVASEKVHRIVPVDATWYLPSWKLDNKVDFLTKPRIPNSIFFDIDAISDKKSPYPHMFPTKKVFDDAMSN  107 (327)
T ss_dssp             EEECHHHHHHHHHHCSSSCEEEEECCCCCGGGCCCHHHHHHHSCBCTTCEECCTTTSSCTTSSSTTCCCCHHHHHHHHHH
T ss_pred             cccCHHHHHHHHhCCCCCcEEEEEecCCCCCCCCCHHHHHHhhCcCCCCeeeChHHhcCCCCCCCCCCcCHHHHHHHHHH
Confidence            369999999999642    7899986        2 3466 689999999999864322     2567788888888877


Q ss_pred             --cCCCCcEEEEcCCC-hHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcccccc
Q 029759          134 --FRKHDEIIVGCQSG-KRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEK  185 (188)
Q Consensus       134 --l~~~~~ivv~C~sG-~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~  185 (188)
                        |+++++||+|.+.+ ..|.+++|.|+.+|+++| +|+|| .+|.++|+|++++.
T Consensus       108 lGI~~d~~VVvYD~~~~~~AaR~wW~Lr~~Gh~~V~vLdGg-~aW~~~g~p~~~~~  162 (327)
T 3utn_X          108 LGVQKDDILVVYDRVGNFSSPRCAWTLGVMGHPKVYLLNNF-NQYREFKYPLDSSK  162 (327)
T ss_dssp             TTCCTTCEEEEECSSSSSSHHHHHHHHHHTTCSEEEEESCH-HHHHHTTCCCBCCC
T ss_pred             cCCCCCCEEEEEeCCCCcHHHHHHHHHHHcCCCceeecccH-HHHHHhCCCcccCC
Confidence              68899999999875 568999999999999999 67765 99999999998753

>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for structural genomics of infectious diseases, csgid, HYDR; 2.10A {Staphylococcus aureus}

Probab=99.40  E-value=5.7e-13  Score=114.92  Aligned_cols=78  Identities=19%  Similarity=0.144  Sum_probs=60.6

Q ss_pred             CCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHh-ccCCCCcEEEEcCCChHHHHHHHHHHHCCCCc
Q 029759           86 AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-RFRKHDEIIVGCQSGKRSMMAATDLLNAVSTH  164 (188)
Q Consensus        86 ~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~-~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~  164 (188)
                      ++.+|||+|++.+|..||||||+|+|+.           ..+..... .++++++||+||+ +.++.++++.|..+||++
T Consensus       295 ~~~~ilD~R~~~~y~~gHIpGAv~ip~~-----------~~~~~~~~~~~~~~~~vvly~~-~~~a~~a~~~L~~~G~~~  362 (466)
T 3r2u_A          295 TNRLTFDLRSKEAYHGGHIEGTINIPYD-----------KNFINQIGWYLNYDQEINLIGD-YHLVSKATHTLQLIGYDD  362 (466)
T ss_dssp             CCSEEEECSCHHHHHHSCCTTCEECCSS-----------TTHHHHHTTTCCTTSCEEEESC-HHHHHHHHHHHHTTTCCC
T ss_pred             CCeEEEECCCHHHHhhCCCCCcEECCcc-----------HHHHHHHHhccCCCCeEEEEEC-CchHHHHHHHhhhhhccc
Confidence            3479999999999999999999999984           23333333 3678899999999 568999999999999998


Q ss_pred             e--EecCcHHhhh
Q 029759          165 A--NYPSKPLTWF  175 (188)
Q Consensus       165 v--~l~GG~~~W~  175 (188)
                      +  ++.|++..|.
T Consensus       363 v~~~l~g~~~~~~  375 (466)
T 3r2u_A          363 IAGYQLPQSKIQT  375 (466)
T ss_dssp             EEEEECCC-----
T ss_pred             ccccccCcccccH
Confidence            8  4777665554

>2f46_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 1.41A {Neisseria meningitidis Z2491}

Probab=98.18  E-value=6.6e-06  Score=60.40  Aligned_cols=84  Identities=15%  Similarity=0.119  Sum_probs=54.4

Q ss_pred             cCHHHHHHHHhCC-CEEEecCChhh------------HhcC-CCCCeEEcCcccccCCCCCCCHHHHHHHHhcc-CCCCc
Q 029759           75 VPVRVAHELLQAG-HRYLDVRTPEE------------FSAG-HATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-RKHDE  139 (188)
Q Consensus        75 i~~~~~~~~l~~~-~~iIDvR~~~e------------f~~g-hIpgAinip~~~~~~~~~~~~~~~l~~~~~~l-~~~~~  139 (188)
                      ++++++..+.+.+ ..|||+|++.|            |..+ +|+|.+|+|+..    + ..+.+.+......+ ..+.+
T Consensus        30 ~~~~d~~~L~~~Gi~~IIdlR~~~E~~~~p~~~~~~~~~~~~gi~~~~~iPv~~----~-~~~~~~~~~~~~~l~~~~~p  104 (156)
T 2f46_A           30 LTKADAEQIAQLGIKTIICNRPDREEESQPDFAQIKQWLEQAGVTGFHHQPVTA----R-DIQKHDVETFRQLIGQAEYP  104 (156)
T ss_dssp             CCGGGHHHHHHHTCCEEEECSCTTSSTTCCCHHHHHHHHGGGTCCEEEECCCCT----T-TCCHHHHHHHHHHHHTSCSS
T ss_pred             CCHHHHHHHHHCCCCEEEECCCCccccCCCcHHHHHHHHHHCCCHhheECccCC----C-CCCHHHHHHHHHHHHhCCCC
Confidence            4566666665556 78999998765            3344 599999999852    1 22344555444434 34789


Q ss_pred             EEEEcCCChHHHHHHHH-HHHCCCC
Q 029759          140 IIVGCQSGKRSMMAATD-LLNAVST  163 (188)
Q Consensus       140 ivv~C~sG~~a~~a~~~-L~~~G~~  163 (188)
                      |+++|.+|.|+..++.. |...|.+
T Consensus       105 VlvHC~sG~Rs~~l~al~l~~~g~~  129 (156)
T 2f46_A          105 VLAYCRTGTRCSLLWGFRRAAEGMP  129 (156)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCC
Confidence            99999999987743332 3445654

>4erc_A Dual specificity protein phosphatase 23; alpha beta, phosphatase(hydrolase), hydrolase; 1.15A {Homo sapiens} PDB: 2img_A

Probab=93.89  E-value=0.32  Score=34.13  Aligned_cols=84  Identities=12%  Similarity=0.037  Sum_probs=49.0

Q ss_pred             CHHHHHHHHhCC-CEEEecCChhhHhcCCCCC--eEEcCcccccCCCCCCCHHHHHHHHhc----cCCCCcEEEEcCCCh
Q 029759           76 PVRVAHELLQAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSGK  148 (188)
Q Consensus        76 ~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpg--Ainip~~~~~~~~~~~~~~~l~~~~~~----l~~~~~ivv~C~sG~  148 (188)
                      +++++..+.+.+ ..|||+|+..+......+|  -+++|+.    +....+.+.+......    +..+.+++|+|..|.
T Consensus        24 ~~~~~~~L~~~gi~~Vi~l~~~~~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~~i~~~~~~~~~vlVHC~~G~   99 (150)
T 4erc_A           24 LPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIP----DFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGF   99 (150)
T ss_dssp             SHHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCC----TTSCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CHHHHHHHHHCCCCEEEEcCCCCCCcccccCCceEEEEecC----CCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCC
Confidence            355666665666 7999999976544333444  3456653    2223344444444333    245689999999985


Q ss_pred             -HHH-HHHH-HHHHCCCC
Q 029759          149 -RSM-MAAT-DLLNAVST  163 (188)
Q Consensus       149 -~a~-~a~~-~L~~~G~~  163 (188)
                       |+. .++. .+...|++
T Consensus       100 ~Rsg~~~a~~l~~~~~~~  117 (150)
T 4erc_A          100 GRTGTMLACYLVKERGLA  117 (150)
T ss_dssp             HHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHcCCC
Confidence             655 3333 34446664

>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A

Probab=92.53  E-value=0.35  Score=34.18  Aligned_cols=86  Identities=8%  Similarity=-0.043  Sum_probs=46.3

Q ss_pred             HHHHHHHHhCC-CEEEecCChhhHhc-------CCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc-C-CCCcEEEEcCC
Q 029759           77 VRVAHELLQAG-HRYLDVRTPEEFSA-------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-R-KHDEIIVGCQS  146 (188)
Q Consensus        77 ~~~~~~~l~~~-~~iIDvR~~~ef~~-------ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l-~-~~~~ivv~C~s  146 (188)
                      ++++..+.+.+ ..|||.|+..+...       ..| .-+++|..+..........+.+.+.+..+ + .+.+|+++|..
T Consensus        23 ~~d~~~L~~~gi~~Vi~l~~~~e~~~~~~~~~~~gi-~~~~ipi~d~~~~~~~~~~~~~~~~~~~i~~~~~~~vlvHC~a  101 (151)
T 1xri_A           23 SANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGI-RLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCKR  101 (151)
T ss_dssp             HHHHHHHHHHTCSEEEECCSSCCCHHHHHHHHHHTC-EEEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECSS
T ss_pred             ccCHHHHHHCCCCEEEECCCCCcChhHHHHHHhcCC-eEEecccccccCccccCCHHHHHHHHHHHHcCCCCCEEEECCC
Confidence            34444443445 78999998654321       112 23667763211111112334555544443 2 46899999999


Q ss_pred             Ch-HHH-HHHHHHHHCCCC
Q 029759          147 GK-RSM-MAATDLLNAVST  163 (188)
Q Consensus       147 G~-~a~-~a~~~L~~~G~~  163 (188)
                      |. |+. .++..|...|++
T Consensus       102 G~~RTg~~~a~~l~~~g~~  120 (151)
T 1xri_A          102 GKHRTGCLVGCLRKLQKWC  120 (151)
T ss_dssp             SSSHHHHHHHHHHHHTTBC
T ss_pred             CCCHHHHHHHHHHHHhCCC
Confidence            84 654 455556667764

>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual specicity protein phosphatase 23, DUS23_human, malate, structural genomics, PSI; 1.93A {Homo sapiens}

Probab=91.67  E-value=0.83  Score=31.85  Aligned_cols=84  Identities=12%  Similarity=0.038  Sum_probs=46.8

Q ss_pred             CHHHHHHHHhCC-CEEEecCChhhHhcCCCC--CeEEcCcccccCCCCCCCHHHHHHHHhc----cCCCCcEEEEcCCCh
Q 029759           76 PVRVAHELLQAG-HRYLDVRTPEEFSAGHAT--GAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSGK  148 (188)
Q Consensus        76 ~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIp--gAinip~~~~~~~~~~~~~~~l~~~~~~----l~~~~~ivv~C~sG~  148 (188)
                      .++++..+.+.+ ..|||+|+..++....++  +-+++|+.    +....+.+.+......    +..+.+|+|+|..|.
T Consensus        25 ~~~~~~~l~~~gi~~Vv~l~~~~e~~~~~~~~~~~~~~~~~----d~~~p~~~~~~~~~~~i~~~~~~~~~vlVHC~aG~  100 (151)
T 2img_A           25 LPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLRIP----DFCPPAPDQIDRFVQIVDEANARGEAVGVHCALGF  100 (151)
T ss_dssp             SHHHHHHHHHTTEEEEEECSSSCCTTGGGCTTSEEEECCCC----TTCCCCHHHHHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cHHHHHHHHHCCCCEEEECCCCCCCCHHHHhhCCeEEEeCC----CCCCCCHHHHHHHHHHHHHHHhCCCcEEEECCCCC
Confidence            455555555556 799999987654432232  34667763    2222333444433332    235789999999883


Q ss_pred             -HHH-HHHHHHHHC-CCC
Q 029759          149 -RSM-MAATDLLNA-VST  163 (188)
Q Consensus       149 -~a~-~a~~~L~~~-G~~  163 (188)
                       |+. .++..|... |.+
T Consensus       101 ~Rsg~~~~~~l~~~~~~~  118 (151)
T 2img_A          101 GRTGTMLACYLVKERGLA  118 (151)
T ss_dssp             SHHHHHHHHHHHHHHCCC
T ss_pred             ChHHHHHHHHHHHHhCcC
Confidence             544 344444433 654

>1ywf_A Phosphotyrosine protein phosphatase PTPB; four stranded parallel beta sheet with flanking helices, structural genomics, PSI; 1.71A {Mycobacterium tuberculosis} SCOP: c.45.1.5 PDB: 2oz5_A*

Probab=91.43  E-value=1.5  Score=35.03  Aligned_cols=100  Identities=15%  Similarity=0.163  Sum_probs=57.6

Q ss_pred             ccccccCCCcccCHHHHHHHHhCC-CEEEecCChhhHhcC----CCCCe--EEcCcccccC-CC--------C----CC-
Q 029759           64 GNLEAVGVPTSVPVRVAHELLQAG-HRYLDVRTPEEFSAG----HATGA--INVPYMYRVG-SG--------M----TK-  122 (188)
Q Consensus        64 ~~~~~~~~~~~i~~~~~~~~l~~~-~~iIDvR~~~ef~~g----hIpgA--inip~~~~~~-~~--------~----~~-  122 (188)
                      +.+-..+.+..++++++..+.+-+ ..|||.|++.|....    ..+|.  +++|+..... ..        .    +. 
T Consensus        45 G~lyRS~~l~~lt~~d~~~L~~lGI~tVIDLR~~~E~~~~~pd~~~~Gi~~~~iPi~~~~~~~~~~~~p~~~~~~~~~~~  124 (296)
T 1ywf_A           45 GRLFRSSELSRLDDAGRATLRRLGITDVADLRSSREVARRGPGRVPDGIDVHLLPFPDLADDDADDSAPHETAFKRLLTN  124 (296)
T ss_dssp             TSEEEESCCTTCCHHHHHHHHHHTCCEEEECCCHHHHHHHCSCCCCTTCEEEECCCCCSCC-------------------
T ss_pred             cceeccCCcccCCHHHHHHHHhCCCCEEEECcChhhhhccCCCCCCCCCEEEEecCccccccccccccchhhHHHHHhhh
Confidence            333333444457788877766556 799999998875422    23453  5677542211 00        0    00 


Q ss_pred             --------C--------------------------HHHHHHHHhccCCCCcEEEEcCCC--hHHHHHHHHHHHCCCC
Q 029759          123 --------N--------------------------LKFVEEVSTRFRKHDEIIVGCQSG--KRSMMAATDLLNAVST  163 (188)
Q Consensus       123 --------~--------------------------~~~l~~~~~~l~~~~~ivv~C~sG--~~a~~a~~~L~~~G~~  163 (188)
                              +                          ...+...+..+..+.|++|+|..|  -+...++..|..+|.+
T Consensus       125 ~~~~g~~~~~~~~~~~~~~~~m~~~Y~~~~~~~~~~~~~~~~l~~l~~~~pvl~HC~aGkDRTG~~~alll~~~g~~  201 (296)
T 1ywf_A          125 DGSNGESGESSQSINDAATRYMTDEYRQFPTRNGAQRALHRVVTLLAAGRPVLTHCFAGKDRTGFVVALVLEAVGLD  201 (296)
T ss_dssp             ------------CCCHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHHHHHHTTCC
T ss_pred             cccccccchhhhcccchHHHHHHHHHHHHHhcchhHHHHHHHHHHhccCCCEEEECCCCCccccHHHHHHHHHcCCC
Confidence                    0                          012333344332378999999987  3456677888889986

>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1

Probab=91.31  E-value=0.025  Score=41.87  Aligned_cols=21  Identities=19%  Similarity=0.494  Sum_probs=19.6

Q ss_pred             EEEecCChhhHhcCCCCCeEEcCcc
Q 029759           89 RYLDVRTPEEFSAGHATGAINVPYM  113 (188)
Q Consensus        89 ~iIDvR~~~ef~~ghIpgAinip~~  113 (188)
                      ++||||.++||+    |||+|+|..
T Consensus       123 ~liDvRe~~E~~----pgA~~iprg  143 (168)
T 1v8c_A          123 AVVRFREVEPLK----VGSLSIPQL  143 (168)
T ss_dssp             EEEEEEEEEEEE----ETTEEEEEE
T ss_pred             EEEECCChhhcC----CCCEEcChh
Confidence            899999999999    999999964

>2nt2_A Protein phosphatase slingshot homolog 2; alpha/beta hydrolase; 2.10A {Homo sapiens}

Probab=88.79  E-value=0.69  Score=32.41  Aligned_cols=80  Identities=15%  Similarity=0.111  Sum_probs=39.9

Q ss_pred             HHHHhCC-CEEEecCChhhHhcCCCCC---eEEcCcccccCCCCCCC-HHHHHHHHhccCCCCcEEEEcCCC-hHHHH--
Q 029759           81 HELLQAG-HRYLDVRTPEEFSAGHATG---AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMM--  152 (188)
Q Consensus        81 ~~~l~~~-~~iIDvR~~~ef~~ghIpg---Ainip~~~~~~~~~~~~-~~~l~~~~~~l~~~~~ivv~C~sG-~~a~~--  152 (188)
                      ..+.+.+ ..|||+|+..+   ...|+   -+++|..+......... .+.++........+.+|+++|..| .||..  
T Consensus        23 ~~L~~~gi~~Vi~l~~~~~---~~~~~~~~~~~ipi~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~~G~~RS~~~v   99 (145)
T 2nt2_A           23 EDLQNRGVRYILNVTREID---NFFPGVFEYHNIRVYDEEATDLLAYWNDTYKFISKAKKHGSKCLVHSKMGVSRSASTV   99 (145)
T ss_dssp             HHHHHTTEEEEEECCSSSC---CSCBTTBEEEECCCCSSTTCCCGGGHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHH
T ss_pred             HHHHHCCCCEEEEeCCCCc---cCCCCCcEEEEEEEeCCCCCcHHHHHHHHHHHHHHHHHcCCeEEEECCCCCchHHHHH
Confidence            3333455 68999997532   11222   35677642211111110 011111111123568999999998 67643  


Q ss_pred             HHHHHHHCCCC
Q 029759          153 AATDLLNAVST  163 (188)
Q Consensus       153 a~~~L~~~G~~  163 (188)
                      +++.+...|++
T Consensus       100 ~ayLm~~~~~~  110 (145)
T 2nt2_A          100 IAYAMKEYGWN  110 (145)
T ss_dssp             HHHHHHHHCCC
T ss_pred             HHHHHHHhCCC
Confidence            45556656654

>2hcm_A Dual specificity protein phosphatase; structural genomics, PSI, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Mus musculus}

Probab=88.24  E-value=0.74  Score=33.04  Aligned_cols=74  Identities=22%  Similarity=0.293  Sum_probs=39.5

Q ss_pred             hCC-CEEEecCChhhHhcCCCCC--eEEcCcccccCCCCCCCHHHHHHHHhc----cCCCCcEEEEcCCC-hHHHH--HH
Q 029759           85 QAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIVGCQSG-KRSMM--AA  154 (188)
Q Consensus        85 ~~~-~~iIDvR~~~ef~~ghIpg--Ainip~~~~~~~~~~~~~~~l~~~~~~----l~~~~~ivv~C~sG-~~a~~--a~  154 (188)
                      +.+ ..|||+|...+..  ...|  -+++|+.+...   ....+.+......    +..+.+|+++|..| .|+..  ++
T Consensus        35 ~~gI~~Vi~l~~~~~~~--~~~~~~~~~ip~~D~~~---~~~~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~~~a  109 (164)
T 2hcm_A           35 RAGITLCVNVSRQQPGP--RAPGVAELRVPVFDDPA---EDLLTHLEPTCAAMEAAVRDGGSCLVYCKNGRSRSAAVCTA  109 (164)
T ss_dssp             HTTEEEEEECSSSCCCC--CCTTCEEEECCCCSCTT---SCCHHHHHHHHHHHHHHHHTTCEEEEEESSSSHHHHHHHHH
T ss_pred             HCCCeEEEEcCCCCCCC--CCCCCEEEEEeCcCCCC---chHHHHHHHHHHHHHHHHHcCCEEEEECCCCCchHHHHHHH
Confidence            445 6899999865321  1122  35666532111   1111222222221    23578999999998 56653  34


Q ss_pred             HHHHHCCCC
Q 029759          155 TDLLNAVST  163 (188)
Q Consensus       155 ~~L~~~G~~  163 (188)
                      ..+...|++
T Consensus       110 yLm~~~~~~  118 (164)
T 2hcm_A          110 YLMRHRGHS  118 (164)
T ss_dssp             HHHHHSCCC
T ss_pred             HHHHHhCCC
Confidence            566667764

>1fpz_A Cyclin-dependent kinase inhibitor 3; alpha-beta sandwich, hydrolase; 2.00A {Homo sapiens} SCOP: c.45.1.1 PDB: 1fq1_A*

Probab=87.79  E-value=1.7  Score=32.60  Aligned_cols=83  Identities=22%  Similarity=0.257  Sum_probs=43.9

Q ss_pred             HHHHHHHHhCC-CEEEecCChhhHhcCCCC---------C--eEEcCcccccCCCCCCCHHHHHHHHhc----cCCCCcE
Q 029759           77 VRVAHELLQAG-HRYLDVRTPEEFSAGHAT---------G--AINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEI  140 (188)
Q Consensus        77 ~~~~~~~l~~~-~~iIDvR~~~ef~~ghIp---------g--Ainip~~~~~~~~~~~~~~~l~~~~~~----l~~~~~i  140 (188)
                      .+++..+.+.+ ..|||+|+..|...-.++         |  -+++|+.    +....+.+.+......    +..+.+|
T Consensus        61 ~~d~~~L~~~gi~~Vv~l~~~~E~~~~~~~~~~~~~~~~gi~~~~~pi~----d~~~p~~~~~~~~~~~i~~~~~~~~~V  136 (212)
T 1fpz_A           61 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIA----DGGTPDIASCCEIMEELTTCLKNYRKT  136 (212)
T ss_dssp             HHHHHHHHHHTCCEEEECCCHHHHHHTTCTTHHHHHHHTTCEEEECCCC----TTCCCCHHHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHCCCCEEEEcCCHHHHHhcCCccHHHHHHHcCCEEEEecCC----CCCCCCHHHHHHHHHHHHHHHhCCCCE
Confidence            44444444445 799999998654321111         2  3556653    2222233333333332    2357899


Q ss_pred             EEEcCCCh-HH-HHHHHHHHH--CCCC
Q 029759          141 IVGCQSGK-RS-MMAATDLLN--AVST  163 (188)
Q Consensus       141 vv~C~sG~-~a-~~a~~~L~~--~G~~  163 (188)
                      +|+|..|. |+ ..++..|..  .|.+
T Consensus       137 lVHC~aG~gRTg~~~a~~L~~~~~g~~  163 (212)
T 1fpz_A          137 LIHSYGGLGRSCLVAACLLLYLSDTIS  163 (212)
T ss_dssp             EEECSSSSSHHHHHHHHHHHHHCSSCC
T ss_pred             EEECCCCCCHHHHHHHHHHHHhccCCC
Confidence            99999884 44 344455544  3654

>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}

Probab=86.99  E-value=1.2  Score=31.72  Aligned_cols=76  Identities=9%  Similarity=0.045  Sum_probs=37.8

Q ss_pred             hCC-CEEEecCChhhHhcCCCCC--eEEcCcccccCCCCCCC-HHHHHHHHhccCCCCcEEEEcCCC-hHHHH--HHHHH
Q 029759           85 QAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMM--AATDL  157 (188)
Q Consensus        85 ~~~-~~iIDvR~~~ef~~ghIpg--Ainip~~~~~~~~~~~~-~~~l~~~~~~l~~~~~ivv~C~sG-~~a~~--a~~~L  157 (188)
                      +.+ ..|||+|+..+..   ..|  -+++|+.+......... .+.++.....+..+.+|+++|..| .|+..  ++..+
T Consensus        31 ~~gI~~Vi~l~~~~~~~---~~~i~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~aG~~RSg~~~~aylm  107 (160)
T 1yz4_A           31 RNKITHIISIHESPQPL---LQDITYLRIPVADTPEVPIKKHFKECINFIHCCRLNGGNCLVHSFAGISRSTTIVTAYVM  107 (160)
T ss_dssp             HTTCCEEEEECSSCCCC---CTTCEEEEECCCSCTTSCGGGGHHHHHHHHHHHHHTTCCEEEEETTSSSHHHHHHHHHHH
T ss_pred             HCCCeEEEEccCCCCCc---cCCCeEEEEECCCCCCccHHHHHHHHHHHHHHHHHcCCeEEEECCCCCchHHHHHHHHHH
Confidence            345 6899999764321   122  35666542211111101 111111111123568999999998 56653  34445


Q ss_pred             HHCCCC
Q 029759          158 LNAVST  163 (188)
Q Consensus       158 ~~~G~~  163 (188)
                      ...|.+
T Consensus       108 ~~~~~~  113 (160)
T 1yz4_A          108 TVTGLG  113 (160)
T ss_dssp             HHHCCC
T ss_pred             HHcCCC
Confidence            556654

>3s4o_A Protein tyrosine phosphatase-like protein; structural genomics, medical structural genomics of pathogen protozoa, MSGPP, unknown function; HET: MSE EPE; 2.30A {Leishmania major}

Probab=86.92  E-value=5.9  Score=27.78  Aligned_cols=88  Identities=17%  Similarity=0.205  Sum_probs=45.5

Q ss_pred             CCcccCHHHHHHHHh-CC-CEEEecCChh----hHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc-------c---
Q 029759           71 VPTSVPVRVAHELLQ-AG-HRYLDVRTPE----EFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-------F---  134 (188)
Q Consensus        71 ~~~~i~~~~~~~~l~-~~-~~iIDvR~~~----ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~-------l---  134 (188)
                      .|..-+.++..+++. .+ -.|||++.+.    .+...+| .-+++|+.    ++...+.+.+......       +   
T Consensus        30 ~P~~~t~~~~~~~l~~~gi~~Iv~l~~~~~~~~~~~~~~i-~~~~~p~~----d~~~p~~~~~~~~~~~i~~~~~~~~~~  104 (167)
T 3s4o_A           30 APSPSNLPTYIKELQHRGVRHLVRVCGPTYDATLVKSRGI-DVHSWPFD----DGAPPTRAVLDSWLKLLDTELARQQED  104 (167)
T ss_dssp             CCCGGGHHHHHHHHHTTTEEEEEECSCCCSCTHHHHTTTC-EEEECCCC----TTCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCchhhHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHCCC-eEEEeccC----CCCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence            344445555555554 45 7899999752    2222222 23466653    2222333333322221       1   


Q ss_pred             --CCCCcEEEEcCCCh-HH-HHHHHHHHHC-CCC
Q 029759          135 --RKHDEIIVGCQSGK-RS-MMAATDLLNA-VST  163 (188)
Q Consensus       135 --~~~~~ivv~C~sG~-~a-~~a~~~L~~~-G~~  163 (188)
                        +++.+|+|+|..|. |+ ..++..|... |.+
T Consensus       105 ~~~~~~~vlVHC~aG~~RTg~~~a~~L~~~~~~~  138 (167)
T 3s4o_A          105 PSVPPPTIGVHCVAGLGRAPILVALALVEYGNVS  138 (167)
T ss_dssp             TTCCCCEEEEECSSSSSHHHHHHHHHHHHTTCCC
T ss_pred             cccCCCcEEEECCCCCCHHHHHHHHHHHHhCCCC
Confidence              23789999999873 44 4455555554 654

>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A

Probab=86.79  E-value=2.3  Score=29.53  Aligned_cols=78  Identities=17%  Similarity=0.099  Sum_probs=38.5

Q ss_pred             hCC-CEEEecCChhhH-hcCCCCCeEEcCcccccCCCCCCCHHHHHHHHh-ccCCCCcEEEEcCCCh-HHH-H-HHHHHH
Q 029759           85 QAG-HRYLDVRTPEEF-SAGHATGAINVPYMYRVGSGMTKNLKFVEEVST-RFRKHDEIIVGCQSGK-RSM-M-AATDLL  158 (188)
Q Consensus        85 ~~~-~~iIDvR~~~ef-~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~-~l~~~~~ivv~C~sG~-~a~-~-a~~~L~  158 (188)
                      +.+ ..|||++..... ....+ .-.++|+.+.........-+..-+... ....+.+|+|+|..|. ||. . ++..+.
T Consensus        27 ~~gI~~Vi~l~~~~~~~~~~~~-~~~~ip~~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~~~~aylm~  105 (144)
T 3ezz_A           27 ALGITALLNVSSDCPNHFEGHY-QYKCIPVEDNHKADISSWFMEAIEYIDAVKDCRGRVLVHSQAGISRSATICLAYLMM  105 (144)
T ss_dssp             HTTCCEEEECSSSCCCTTTTTS-EEEECCCCSSSSCCTTTTHHHHHHHHHHHHHTTCCEEEEESSSSSHHHHHHHHHHHH
T ss_pred             HCCCeEEEEccCCCCccCCCCc-eEEEEEcccCCCCChHHHHHHHHHHHHHHHhcCCeEEEECCCCCChhHHHHHHHHHH
Confidence            445 789999974211 11111 235677643222221121122222222 2345689999999984 554 3 344445


Q ss_pred             HCCCC
Q 029759          159 NAVST  163 (188)
Q Consensus       159 ~~G~~  163 (188)
                      ..|++
T Consensus       106 ~~~~~  110 (144)
T 3ezz_A          106 KKRVR  110 (144)
T ss_dssp             HHTCC
T ss_pred             HcCCC
Confidence            56654

>3rz2_A Protein tyrosine phosphatase type IVA 1; tyrosine phosphatase, dual specific phosphatase, COMP with peptide, hydrolase; 2.80A {Rattus norvegicus} PDB: 1x24_A 1zcl_A

Probab=86.32  E-value=5.2  Score=29.22  Aligned_cols=85  Identities=16%  Similarity=0.212  Sum_probs=46.3

Q ss_pred             ccCHHHHHHHHhC-C-CEEEecCChhh----HhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc------CCCCcEE
Q 029759           74 SVPVRVAHELLQA-G-HRYLDVRTPEE----FSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF------RKHDEII  141 (188)
Q Consensus        74 ~i~~~~~~~~l~~-~-~~iIDvR~~~e----f~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l------~~~~~iv  141 (188)
                      ..+.++..+++.+ + ..|||++...+    +..-+| .-+++|+.    ++...+.+.+......+      .++.+|+
T Consensus        47 ~~t~~~~~~~L~~~gi~~Iv~l~~~~~~~~~~~~~~i-~~~~~pi~----d~~~~~~~~~~~~~~~i~~~~~~~~~~~Vl  121 (189)
T 3rz2_A           47 NATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGI-HVLDWPFD----DGAPPSNQIVDDWLSLVKIKFREEPGCCIA  121 (189)
T ss_dssp             TTTHHHHHHHHHTTTEEEEEECSCCCSCCHHHHHSSC-EEEECCCC----SSSCCCSHHHHHHHHHHHHHHHHSTTCEEE
T ss_pred             cccHHHHHHHHHHcCCcEEEEeCCCcCCHHHHHHcCc-EEEEecCC----CCCCCCHHHHHHHHHHHHHHHHhCCCCcEE
Confidence            3455666666654 4 78999997532    222222 23455542    23333334443333322      4668999


Q ss_pred             EEcCCCh-HH-HHHHHHHHHCCCC
Q 029759          142 VGCQSGK-RS-MMAATDLLNAVST  163 (188)
Q Consensus       142 v~C~sG~-~a-~~a~~~L~~~G~~  163 (188)
                      |.|..|. |+ ..++..|...|++
T Consensus       122 VHC~aG~gRSg~~va~~L~~~g~~  145 (189)
T 3rz2_A          122 VHCVAGLGRAPVLVALALIEGGMK  145 (189)
T ss_dssp             EECSSSSTTHHHHHHHHHHTTTCC
T ss_pred             EECCCCCCHHHHHHHHHHHHcCCC
Confidence            9999873 44 4455555556654

>1wrm_A Dual specificity phosphatase 22; DSP, JNK, hydrolase; HET: MES; 1.50A {Homo sapiens}

Probab=86.05  E-value=1.5  Score=31.46  Aligned_cols=78  Identities=14%  Similarity=0.112  Sum_probs=38.1

Q ss_pred             hCC-CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc-cCCCCcEEEEcCCC-hHHHH--HHHHHHH
Q 029759           85 QAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-FRKHDEIIVGCQSG-KRSMM--AATDLLN  159 (188)
Q Consensus        85 ~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~-l~~~~~ivv~C~sG-~~a~~--a~~~L~~  159 (188)
                      +.+ ..|||+|...+-...++ .-+++|..+.........-...-+.+.. ...+.+|+|+|..| .||..  ++..+..
T Consensus        30 ~~gI~~Vi~l~~~~~~~~~~i-~~~~ip~~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~aG~~RSg~~~~ayLm~~  108 (165)
T 1wrm_A           30 KNKVTHILSVHDSARPMLEGV-KYLCIPAADSPSQNLTRHFKESIKFIHECRLRGESCLVHCLAGVSRSVTLVIAYIMTV  108 (165)
T ss_dssp             HTTEEEEEECSTTCCCCSTTC-EEEECCCCSSTTSCCGGGHHHHHHHHHHHHHTTCEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred             HCCCcEEEEecCCCCCCCCCC-eEEEEECCCCCCccHHHHHHHHHHHHHHHHHCCCeEEEECCCCCChhHHHHHHHHHHH
Confidence            345 68999998643211111 2356665422111111100111111111 24578999999998 56554  4455555


Q ss_pred             CCCC
Q 029759          160 AVST  163 (188)
Q Consensus       160 ~G~~  163 (188)
                      .|++
T Consensus       109 ~~~~  112 (165)
T 1wrm_A          109 TDFG  112 (165)
T ss_dssp             SSCC
T ss_pred             cCCC
Confidence            5654

>2r0b_A Serine/threonine/tyrosine-interacting protein; structural genomics, phosphatase, PSI-2, protein structure initiative; 1.60A {Homo sapiens}

Probab=85.49  E-value=2.7  Score=29.45  Aligned_cols=84  Identities=12%  Similarity=0.052  Sum_probs=40.7

Q ss_pred             HHHHHhCC-CEEEecCChhhHhc--CCCC-C--eEEcCcccccCCCCCCCHHHHHHHHh-ccCCCCcEEEEcCCC-hHHH
Q 029759           80 AHELLQAG-HRYLDVRTPEEFSA--GHAT-G--AINVPYMYRVGSGMTKNLKFVEEVST-RFRKHDEIIVGCQSG-KRSM  151 (188)
Q Consensus        80 ~~~~l~~~-~~iIDvR~~~ef~~--ghIp-g--Ainip~~~~~~~~~~~~~~~l~~~~~-~l~~~~~ivv~C~sG-~~a~  151 (188)
                      +..+.+.+ ..|||+|+..|-..  ...+ |  -+++|..+.........-....+... .+..+.+|+++|..| .||.
T Consensus        26 ~~~L~~~gI~~Vi~l~~~~e~~~~~~~~~~~~~~~~ip~~d~~~~~l~~~~~~~~~~i~~~~~~~~~vlvHC~aG~~RS~  105 (154)
T 2r0b_A           26 LPVLQKHGITHIICIRQNIEANFIKPNFQQLFRYLVLDIADNPVENIIRFFPMTKEFIDGSLQMGGKVLVHGNAGISRSA  105 (154)
T ss_dssp             HHHHHHTTCCEEEEEECGGGTTTSSCCCTTTSEEEEEECCSSTTSCCGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHH
T ss_pred             HHHHHHcCCeEEEEeCCccccccCCCCCcCceeEEEEECCCCCcccHHHHHHHHHHHHHHHHhcCCCEEEEcCCCCChHH
Confidence            33333455 78999998765321  1112 2  24566532211111110011111111 123568999999998 5665


Q ss_pred             H-H-HHHHHHCCCC
Q 029759          152 M-A-ATDLLNAVST  163 (188)
Q Consensus       152 ~-a-~~~L~~~G~~  163 (188)
                      . + +..+...|.+
T Consensus       106 ~~~~ayl~~~~~~~  119 (154)
T 2r0b_A          106 AFVIAYIMETFGMK  119 (154)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHcCCC
Confidence            3 3 4445556654

>2esb_A Dual specificity protein phosphatase 18; alpha/beta structure, hydrolase; HET: EPE; 2.00A {Homo sapiens}

Probab=84.94  E-value=2.5  Score=31.10  Aligned_cols=77  Identities=13%  Similarity=0.104  Sum_probs=38.6

Q ss_pred             hCC-CEEEecCChhhHhcCCCCC--eEEcCcccccCCCCCCC-HHHHHHHHhccCCCCcEEEEcCCC-hHHHH--HHHHH
Q 029759           85 QAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKN-LKFVEEVSTRFRKHDEIIVGCQSG-KRSMM--AATDL  157 (188)
Q Consensus        85 ~~~-~~iIDvR~~~ef~~ghIpg--Ainip~~~~~~~~~~~~-~~~l~~~~~~l~~~~~ivv~C~sG-~~a~~--a~~~L  157 (188)
                      +.+ ..|||+|...+  ....+|  -+++|..+......... .+.++.+-..+..+.+|+++|..| .||..  ++..+
T Consensus        43 ~~gIt~Vi~l~~~~~--~~~~~~i~~~~ipi~D~~~~~~~~~~~~~~~fI~~~~~~~~~VLVHC~aG~sRS~~vv~ayLm  120 (188)
T 2esb_A           43 SNQITMVINVSVEVV--NTLYEDIQYMQVPVADSPNSRLCDFFDPIADHIHSVEMKQGRTLLHCAAGVSRSAALCLAYLM  120 (188)
T ss_dssp             HTTCCEEEECCSSCC--CCCCTTCEEEECCCCSCTTSCGGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             HCCCcEEEEecCCCC--CcCCCCCEEEEEeCcCCCCccHHHHHHHHHHHHHHHHHcCCEEEEECCCCCchHHHHHHHHHH
Confidence            345 68999997432  111233  34666532211111110 111111111123578999999998 56653  45556


Q ss_pred             HHCCCC
Q 029759          158 LNAVST  163 (188)
Q Consensus       158 ~~~G~~  163 (188)
                      ...|++
T Consensus       121 ~~~~~s  126 (188)
T 2esb_A          121 KYHAMS  126 (188)
T ss_dssp             HHSCCC
T ss_pred             HHcCCC
Confidence            667764

>3rgo_A Protein-tyrosine phosphatase mitochondrial 1; phosphatidylglycerol phosphate (PGP) phosphatase, hydrolase; 1.93A {Mus musculus} PDB: 3rgq_A*

Probab=84.85  E-value=1.2  Score=31.41  Aligned_cols=81  Identities=11%  Similarity=0.060  Sum_probs=43.5

Q ss_pred             HHHHHH-hCC-CEEEecCChhhHhc----------CCCCCeEEcCcccccCCCCCCCHHHHHHHHhc----cCCCCcEEE
Q 029759           79 VAHELL-QAG-HRYLDVRTPEEFSA----------GHATGAINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEIIV  142 (188)
Q Consensus        79 ~~~~~l-~~~-~~iIDvR~~~ef~~----------ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~----l~~~~~ivv  142 (188)
                      +..+++ +.+ ..|||+|+..|...          ..| .-+++|+.+.   ......+.+......    +..+.+|+|
T Consensus        19 ~~~~ll~~~gi~~Vi~l~~~~e~~~~~~~~~~~~~~gi-~~~~~p~~d~---~~~~~~~~~~~~~~~i~~~~~~~~~vlV   94 (157)
T 3rgo_A           19 MTRRLVLDENVRGVITMNEEYETRFLCNTSKEWKKAGV-EQLRLSTVDM---TGVPTLANLHKGVQFALKYQALGQCVYV   94 (157)
T ss_dssp             GHHHHHHHSCEEEEEEESCCTTTTTSSCCHHHHHHTTC-EEEEECCCTT---TSSCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             chHHHHHHcCCCEEEECccccccccccCCHHHHHHCCC-eEEEecCCCC---CCCChHHHHHHHHHHHHHHHHCCCEEEE
Confidence            344443 345 68999998765421          111 2356676421   112233344433332    245689999


Q ss_pred             EcCCCh-HHHHH--HHHHHHCCCC
Q 029759          143 GCQSGK-RSMMA--ATDLLNAVST  163 (188)
Q Consensus       143 ~C~sG~-~a~~a--~~~L~~~G~~  163 (188)
                      +|..|. |+..+  +..+...|++
T Consensus        95 HC~~G~~Rsg~~~~a~l~~~~~~~  118 (157)
T 3rgo_A           95 HCKAGRSRSATMVAAYLIQVHNWS  118 (157)
T ss_dssp             ESSSSSSHHHHHHHHHHHHHHTCC
T ss_pred             ECCCCCChHHHHHHHHHHHHcCCC
Confidence            999985 66543  3444556654

>2wgp_A Dual specificity protein phosphatase 14; MKP6, DUSP14, hydrolase, dual specifici phosphatase; 1.88A {Homo sapiens}

Probab=83.09  E-value=2.5  Score=31.21  Aligned_cols=77  Identities=17%  Similarity=0.116  Sum_probs=38.3

Q ss_pred             hCC-CEEEecCChhhHhcCCCCC--eEEcCcccccCCCCCCCHHHHHHHHhc-cCCCCcEEEEcCCC-hHHHH--HHHHH
Q 029759           85 QAG-HRYLDVRTPEEFSAGHATG--AINVPYMYRVGSGMTKNLKFVEEVSTR-FRKHDEIIVGCQSG-KRSMM--AATDL  157 (188)
Q Consensus        85 ~~~-~~iIDvR~~~ef~~ghIpg--Ainip~~~~~~~~~~~~~~~l~~~~~~-l~~~~~ivv~C~sG-~~a~~--a~~~L  157 (188)
                      +.+ ..|||+|...+  ....+|  -+++|+.+.........-....+.+.. +..+.+|+|+|..| .|+..  +++.+
T Consensus        49 ~~gI~~Vi~l~~~~~--~~~~~gi~y~~ipi~D~~~~~l~~~~~~~~~fi~~~~~~~~~VlVHC~aG~~RSgtvv~ayLm  126 (190)
T 2wgp_A           49 ARGITCIVNATIEIP--NFNWPQFEYVKVPLADMPHAPIGLYFDTVADKIHSVSRKHGATLVHCAAGVSRSATLCIAYLM  126 (190)
T ss_dssp             HTTCCEEEECCSSSC--CCCCTTSEEEECCCCSSTTSCGGGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             HCCCcEEEEecCCCC--CCCCCCCEEEEEEcccCCCCCHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHH
Confidence            445 78999997532  112233  356665422111110100111111111 23578999999998 56552  45556


Q ss_pred             HHCCCC
Q 029759          158 LNAVST  163 (188)
Q Consensus       158 ~~~G~~  163 (188)
                      ...|++
T Consensus       127 ~~~~~s  132 (190)
T 2wgp_A          127 KFHNVC  132 (190)
T ss_dssp             HHHCCC
T ss_pred             HHcCCC
Confidence            666654

>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}

Probab=82.07  E-value=1.5  Score=30.83  Aligned_cols=28  Identities=32%  Similarity=0.387  Sum_probs=20.1

Q ss_pred             CCCcEEEEcCCC-hHHH-H-HHHHHHHCCCC
Q 029759          136 KHDEIIVGCQSG-KRSM-M-AATDLLNAVST  163 (188)
Q Consensus       136 ~~~~ivv~C~sG-~~a~-~-a~~~L~~~G~~  163 (188)
                      .+.+|+++|..| .|+. . ++..+...|++
T Consensus        84 ~~~~vlVHC~aG~~RSg~~~~ayl~~~~~~~  114 (151)
T 2e0t_A           84 PGGKILVHCAVGVSRSATLVLAYLMLYHHLT  114 (151)
T ss_dssp             TTCCEEEECSSSSHHHHHHHHHHHHHHSCCC
T ss_pred             CCCcEEEECCCCCChHHHHHHHHHHHHcCCC
Confidence            578999999998 6665 3 44556667764

>1zzw_A Dual specificity protein phosphatase 10; MKP, PTP, hydrolase; 1.60A {Homo sapiens}

Probab=81.33  E-value=2.2  Score=29.83  Aligned_cols=29  Identities=24%  Similarity=0.337  Sum_probs=19.8

Q ss_pred             CCCCcEEEEcCCC-hHHHH--HHHHHHHCCCC
Q 029759          135 RKHDEIIVGCQSG-KRSMM--AATDLLNAVST  163 (188)
Q Consensus       135 ~~~~~ivv~C~sG-~~a~~--a~~~L~~~G~~  163 (188)
                      ..+.+|+++|..| .|+..  ++..+...|.+
T Consensus        81 ~~~~~VlVHC~~G~~RSg~~~~ayl~~~~~~~  112 (149)
T 1zzw_A           81 QCGKGLLIHCQAGVSRSATIVIAYLMKHTRMT  112 (149)
T ss_dssp             HTTCEEEEECSSSSSHHHHHHHHHHHHHSCCC
T ss_pred             HcCCeEEEECCCCCCHHHHHHHHHHHHHcCCC
Confidence            3578999999998 56554  33455566764

>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}

Probab=80.96  E-value=4.7  Score=27.94  Aligned_cols=74  Identities=14%  Similarity=0.161  Sum_probs=37.2

Q ss_pred             hCC-CEEEecCChhhHhcCCCC--CeEEcCcccccCCCCCCCHHHHHHHHh----ccCCCCcEEEEcCCCh-HHH-H-HH
Q 029759           85 QAG-HRYLDVRTPEEFSAGHAT--GAINVPYMYRVGSGMTKNLKFVEEVST----RFRKHDEIIVGCQSGK-RSM-M-AA  154 (188)
Q Consensus        85 ~~~-~~iIDvR~~~ef~~ghIp--gAinip~~~~~~~~~~~~~~~l~~~~~----~l~~~~~ivv~C~sG~-~a~-~-a~  154 (188)
                      +.+ ..||+++...+  .....  .-+++|+.+......   .+.+.....    .+..+.+|+|+|..|. ||. . ++
T Consensus        27 ~~gI~~Vl~l~~~~~--~~~~~~~~~~~ipi~D~~~~~~---~~~~~~~~~fi~~~~~~~~~VlVHC~~G~sRS~~~v~a  101 (144)
T 3s4e_A           27 KNKVTHILNVAYGVE--NAFLSDFTYKSISILDLPETNI---LSYFPECFEFIEEAKRKDGVVLVHSNAGVSRAAAIVIG  101 (144)
T ss_dssp             HTTCCEEEECSSSCC--CCCTTTSEEEECCCCCCTTSCG---GGGHHHHHHHHHHHHHTTCCEEEECSSSSSHHHHHHHH
T ss_pred             HcCCCEEEEccCCCC--CCCCCCCEEEEEeccCCCCCch---HHHHHHHHHHHHHHHHcCCeEEEEcCCCCchHHHHHHH
Confidence            445 78999986322  11111  235667643221111   122222222    2345678999999984 654 3 34


Q ss_pred             HHHHHCCCC
Q 029759          155 TDLLNAVST  163 (188)
Q Consensus       155 ~~L~~~G~~  163 (188)
                      ..+...|++
T Consensus       102 yLm~~~~~~  110 (144)
T 3s4e_A          102 FLMNSEQTS  110 (144)
T ss_dssp             HHHHHHCCC
T ss_pred             HHHHHcCCC
Confidence            445556654

>3f81_A Dual specificity protein phosphatase 3; hydrolase, protein dual-specificity phosphatase, inhibitor; HET: STT; 1.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1vhr_A* 1j4x_A*

Probab=80.83  E-value=3.2  Score=30.07  Aligned_cols=27  Identities=22%  Similarity=0.365  Sum_probs=18.3

Q ss_pred             CCcEEEEcCCCh-HHHH--HHHHHHHCCCC
Q 029759          137 HDEIIVGCQSGK-RSMM--AATDLLNAVST  163 (188)
Q Consensus       137 ~~~ivv~C~sG~-~a~~--a~~~L~~~G~~  163 (188)
                      +.+|+|+|..|. |+..  ++..+...|++
T Consensus       115 ~~~VlVHC~~G~~RSg~~v~ayLm~~~~~~  144 (183)
T 3f81_A          115 NGRVLVHCREGYSRSPTLVIAYLMMRQKMD  144 (183)
T ss_dssp             TCCEEEECSSSSSHHHHHHHHHHHHHHCCC
T ss_pred             CCeEEEECCCCcchHHHHHHHHHHHHhCCC
Confidence            689999999984 6543  34444556664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	188
d1tq1a_	119	c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senesc	5e-24
d1c25a_	161	c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId:	2e-07
d1gmxa_	108	c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia	3e-06
d1ymka1	174	c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens)	4e-06
d2gwfa1	135	c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal h	7e-06
d1hzma_	154	c.46.1.1 (A:) Erk2 binding domain of Mapk phosphat	1e-04
d1okga2	139	c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtran	1e-04
d1yt8a4	130	c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase	4e-04
d1yt8a1	136	c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase	6e-04
d1e0ca2	136	c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacte	0.002

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 89.2 bits (220), Expect = 5e-24
 Identities = 66/99 (66%), Positives = 75/99 (75%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKF 126
           E   VP+SV V VAH+LL AGHRYLDVRTPEEFS GHA GAINVPYM R  SGM+KN  F
Sbjct: 2   EESRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDF 61

Query: 127 VEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHA 165
           +E+VS+ F + D IIVGCQSG RS+ A TDLL+A  T  
Sbjct: 62  LEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGV 100

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 2e-07
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS 150
           +D R P E+  GH  GA+N+     +   +   L     V T  ++   +     S +R 
Sbjct: 48  IDCRYPYEYEGGHIKGAVNLH----MEEEVEDFLLKKPIVPTDGKRVIVVFHCEFSSERG 103

Query: 151 MMAATDLLNAVSTHANYPSK 170
                 +         YP  
Sbjct: 104 PRMCRYVRERDRLGNEYPKL 123

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

 Score = 42.4 bits (99), Expect = 3e-06
 Identities = 22/88 (25%), Positives = 31/88 (35%), Gaps = 13/88 (14%)

Query: 74  SVPVRVAHELLQAGHRYL-DVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVST 132
            + V  AH+ LQ     L D+R P+ F+ GHA  A ++                      
Sbjct: 6   CINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTL------------GAFMR 53

Query: 133 RFRKHDEIIVGCQSGKRSMMAATDLLNA 160
                  ++V C  G  S  AA  LL  
Sbjct: 54  DNDFDTPVMVMCYHGNSSKGAAQYLLQQ 81

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 4e-06
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 91  LDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQ-SGKR 149
           +D R P E+  GH   A+N+P      S + K+            K   +I  C+ S +R
Sbjct: 48  VDCRYPYEYEGGHIKTAVNLPLERDAESFLLKSPIAPCS----LDKRVILIFHCEFSSER 103

Query: 150 SMMAATDLLNAVSTHANYPSK 170
                  +        +YPS 
Sbjct: 104 GPRMCRFIRERDRAVNDYPSL 124

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 7e-06
 Identities = 5/110 (4%), Positives = 29/110 (26%), Gaps = 8/110 (7%)

Query: 74  SVPVRVAHELLQAGHRY---LDVRTPEEFSAGHATGAINVPY-----MYRVGSGMTKNLK 125
           ++  +  + ++   +     +D R  +++       +++VP                   
Sbjct: 2   AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPD 61

Query: 126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPLTWF 175
             ++   +    + +++         +     L ++              
Sbjct: 62  DSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTLRSLKDALFKWESKTVLR 111

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 1e-04
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 12/92 (13%)

Query: 71  VPTSVPVRVAHELLQAGH---RYLDVRTPEEFSAGHATGAINVPY----MYRVGSGMTKN 123
           +  S  V   +E L+ G+     +D R  E + + H   AINV      + R+  G    
Sbjct: 14  MAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPV 73

Query: 124 LKFVE-----EVSTRFRKHDEIIVGCQSGKRS 150
                     +  TR    D +++  +S    
Sbjct: 74  RALFTRGEDRDRFTRRCGTDTVVLYDESSSDW 105

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Length = 139

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 22/86 (25%)

Query: 91  LDVRTPEEFS-----------AGHATGAINVPYMYRVGS-GMTKNLKFVEEVSTRFR--- 135
            D R+ + F+            GH  GA N+PY   + + G  K L+  EE+        
Sbjct: 16  TDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVV 75

Query: 136 -------KHDEIIVGCQSGKRSMMAA 154
                       +  C SG  + +  
Sbjct: 76  QGAGDAADLSSFVFSCGSGVTACINI 101

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.5 bits (83), Expect = 4e-04
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 14/91 (15%)

Query: 67  EAVGVPTSVPVRVAHELLQAGHR---YLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN 123
           +  GV   + +    +      R    LDVRTPEE+ AGH  G+ + P            
Sbjct: 18  DRAGVER-LDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQL-------- 68

Query: 124 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAA 154
               E       +   +++    G R+ M+A
Sbjct: 69  --VQETDHVASVRGARLVLVDDDGVRANMSA 97

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.4 bits (83), Expect = 6e-04
 Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 12/91 (13%)

Query: 66  LEAVGVPTSVPVRVAHELLQ--AGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKN 123
           +EA     S+       LL   A    LD R  +E+      G I+VP            
Sbjct: 17  VEAERHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAEL-------- 68

Query: 124 LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAA 154
              +            +IV C    RS++  
Sbjct: 69  --VLRVAELAPDPRTRVIVNCAGRTRSIIGT 97

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 34.5 bits (78), Expect = 0.002
 Identities = 20/108 (18%), Positives = 31/108 (28%), Gaps = 20/108 (18%)

Query: 70  GVPTSV-----PVRVAHELLQA----GHRYLDVRTPEEFS--------AGHATGAINVPY 112
           G P ++     P      LL           D R+P+E+          GH  GA+N  +
Sbjct: 1   GGPVALSLHDEPTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEW 60

Query: 113 MYRVGSGMTKN---LKFVEEVSTRFRKHDEIIVGCQSGKRSMMAATDL 157
              +                         EI+  CQ+  RS +     
Sbjct: 61  TAAMDPSRALRIRTDIAGRLEELGITPDKEIVTHCQTHHRSGLTYLIA 108

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d1tq1a_	119	Thiosulfate sulfurtransferase/Senescence-associate	99.95
d1e0ca2	136	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.94
d1rhsa2	144	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1uara2	141	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.92
d1yt8a1	136	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.92
d1gmxa_	108	Sulfurtransferase GlpE {Escherichia coli [TaxId: 5	99.92
d1yt8a3	157	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.91
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	99.91
d1urha2	120	3-mercaptopyruvate sulfurtransferase {Escherichia	99.9
d1uara1	143	Sulfurtransferase {Thermus thermophilus [TaxId: 27	99.9
d1e0ca1	135	Sulfurtransferase {Azotobacter vinelandii [TaxId:	99.89
d1rhsa1	149	Rhodanese {Cow (Bos taurus) [TaxId: 9913]}	99.89
d1qxna_	137	Polysulfide-sulfur transferase (sulfide dehydrogen	99.89
d1yt8a2	101	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.89
d1okga2	139	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.89
d1yt8a4	130	Thiosulfate sulfurtransferase PA2603 {Pseudomonas	99.87
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	99.85
d1t3ka_	132	Dual specificity phosphatase Cdc25 {Thale cress (A	99.83
d1c25a_	161	CDC25a {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1ymka1	174	CDC25b {Human (Homo sapiens) [TaxId: 9606]}	99.69
d2gwfa1	135	Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Hum	99.65
d1hzma_	154	Erk2 binding domain of Mapk phosphatase mkp-3 {Hum	99.59
d1xria_	151	Putative phosphatase At1g05000 {Thale cress (Arabi	95.59
d1c4oa2	174	Nucleotide excision repair enzyme UvrB {Thermus th	91.19
d1ywfa1	272	Phosphotyrosine protein phosphatase PtpB {Mycobact	89.65
d1okga1	156	3-mercaptopyruvate sulfurtransferase {Leishmania m	89.22
d1urha1	147	3-mercaptopyruvate sulfurtransferase {Escherichia	88.26
d1t5la2	181	Nucleotide excision repair enzyme UvrB {Bacillus c	82.95
d1fpza_	176	Kinase associated phosphatase (kap) {Human (Homo s	82.49
d1jr6a_	138	HCV helicase domain {Human hepatitis C virus (HCV)	82.11
d1m3ga_	145	Mapk phosphatase {Human (Homo sapiens), pac-1 [Tax	81.17

>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Thiosulfate sulfurtransferase/Senescence-associated protein
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.95  E-value=1.2e-28  Score=174.78  Aligned_cols=114  Identities=58%  Similarity=0.838  Sum_probs=103.1

Q ss_pred             cCCCcccCHHHHHHHHhCCCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCCh
Q 029759           69 VGVPTSVPVRVAHELLQAGHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGK  148 (188)
Q Consensus        69 ~~~~~~i~~~~~~~~l~~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~  148 (188)
                      ...|..+++.++.++++++.+|||+|++.||..||||||+|+|+............+++.+....++++++||+||++|.
T Consensus         4 ~~~p~~i~~~~a~~l~~~g~~liDvR~~~e~~~ghi~ga~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~C~~G~   83 (119)
T d1tq1a_           4 SRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPYMNRGASGMSKNTDFLEQVSSHFGQSDNIIVGCQSGG   83 (119)
T ss_dssp             SCCCEEEEHHHHHHHHHHTCCEEEESCHHHHHHCCBTTBEECCSCCCSTTTCCCTTTHHHHHTTTCCTTSSEEEEESSCS
T ss_pred             ccCCCccCHHHHHHHHHCcCEEEECCCHHHHHcCCCCCccchhhcccccccccccHHHHHHHHHhcCCCcEEEEEcCCcC
Confidence            45567899999999999899999999999999999999999998665556666777888888888889999999999999


Q ss_pred             HHHHHHHHHHHCCCCce-EecCcHHhhhhCCCccc
Q 029759          149 RSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLT  182 (188)
Q Consensus       149 ~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~  182 (188)
                      ||..++..|...||+++ +|.|||.+|.++|+|++
T Consensus        84 rs~~a~~~L~~~G~~nv~~l~GG~~~W~~~g~P~e  118 (119)
T d1tq1a_          84 RSIKATTDLLHAGFTGVKDIVGGYSAWAKNGLPTK  118 (119)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCHHHHHHHTCCCC
T ss_pred             cHHHHHHHHHhcccCCeEEecChHHHHHHCCCCcc
Confidence            99999999999999999 79999999999999986

>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.94  E-value=6.6e-27  Score=169.39  Aligned_cols=110  Identities=18%  Similarity=0.204  Sum_probs=96.1

Q ss_pred             cccCHHHHHHHHhC-CCEEEecCChhhHh--------cCCCCCeEEcCcccccC-CCCCCCHHHHHHHHhc--cCCCCcE
Q 029759           73 TSVPVRVAHELLQA-GHRYLDVRTPEEFS--------AGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEI  140 (188)
Q Consensus        73 ~~i~~~~~~~~l~~-~~~iIDvR~~~ef~--------~ghIpgAinip~~~~~~-~~~~~~~~~l~~~~~~--l~~~~~i  140 (188)
                      ..++.+++.+.+.+ +.+|||+|++.||.        .||||||+|+|+...+. ++.+++++.+++.+..  ++++++|
T Consensus        12 ~~~s~d~l~~~l~~~~~~liD~R~~~ey~G~~~~~~~~GhIPGAinip~~~~~~~~~~~~~~~~l~~~~~~~gi~~~~~v   91 (136)
T d1e0ca2          12 PTASRDYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDIAGRLEELGITPDKEI   91 (136)
T ss_dssp             TBCCHHHHHHHTTCTTEEEEECSCHHHHTTSSCCSSSCSBCTTCEECCGGGGEEGGGTTEECTTHHHHHHHTTCCTTSEE
T ss_pred             ceEcHHHHHHhhCCCCeEEEECcChHHhcccccccccCCcchhHhhhhhhhhhccccccchhHHHhhhhhhcccCCCCce
Confidence            36899999999976 49999999999996        79999999999876554 5667777778877766  5788999


Q ss_pred             EEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhhC-CCccc
Q 029759          141 IVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLS-NQLLT  182 (188)
Q Consensus       141 vv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~-g~p~~  182 (188)
                      |+||++|.+|+.+++.|+.+||+++ +|+|||.+|..+ ++|++
T Consensus        92 V~yC~~G~~a~~~~~~l~~~G~~~v~~ydGg~~eW~~~~~~PvE  135 (136)
T d1e0ca2          92 VTHCQTHHRSGLTYLIAKALGYPRVKGYAGSWGEWGNHPDTPVE  135 (136)
T ss_dssp             EEECSSSSHHHHHHHHHHHTTCSCEEECSSHHHHHTTCTTCCCB
T ss_pred             EEeCCChHHHHHHHHHHHHcCCCCcEEecCCHHHHhcCCCCCCc
Confidence            9999999999999999999999998 899999999775 88986

>d1rhsa2 c.46.1.2 (A:150-293) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=5.8e-26  Score=165.85  Aligned_cols=111  Identities=17%  Similarity=0.305  Sum_probs=97.0

Q ss_pred             ccCHHHHHHHHhC-CCEEEecCChhhHh------------cCCCCCeEEcCcccccC-CCCCCCHHHHHHHHhc--cCCC
Q 029759           74 SVPVRVAHELLQA-GHRYLDVRTPEEFS------------AGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKH  137 (188)
Q Consensus        74 ~i~~~~~~~~l~~-~~~iIDvR~~~ef~------------~ghIpgAinip~~~~~~-~~~~~~~~~l~~~~~~--l~~~  137 (188)
                      .++.+++.+.+++ +++|||+|+++||.            .||||||+|+|+...+. ++.+.+++.+++.+..  ++++
T Consensus        12 i~~~~ev~~~l~~~~~~iiD~R~~~ef~G~~~~~~~~~~~~GhIpgA~~ip~~~~~~~~~~~~~~~~l~~~~~~~gi~~~   91 (144)
T d1rhsa2          12 LKTYEQVLENLESKRFQLVDSRAQGRYLGTQPEPDAVGLDSGHIRGSVNMPFMNFLTEDGFEKSPEELRAMFEAKKVDLT   91 (144)
T ss_dssp             EECHHHHHHHHHHCCSEEEECSCHHHHHTSSCCSSSSSCCCCEETTCEECCGGGGBCTTSCBCCHHHHHHHHHHTTCCTT
T ss_pred             eecHHHHHHHhcCCCcEEEECCCCHHHcCCCCCCccccceeeehhhhhhcchhhhhhhhcccCCHHHHHHHHHHcCCCCC
Confidence            5789999988875 49999999999995            69999999999976554 6788899999998876  6788


Q ss_pred             CcEEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhhCC---Cccccc
Q 029759          138 DEIIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLSN---QLLTEE  184 (188)
Q Consensus       138 ~~ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g---~p~~~~  184 (188)
                      ++||+||++|.+|+.+++.|+.+||+++ +|+|||.+|...+   .|++++
T Consensus        92 ~~iI~yC~sG~~A~~~~~~l~~lG~~~v~~YdGsw~eW~~~~~p~~pV~~G  142 (144)
T d1rhsa2          92 KPLIATCRKGVTACHIALAAYLCGKPDVAIYDGSWFEWFHRAPPETWVSQG  142 (144)
T ss_dssp             SCEEEECSSSSTHHHHHHHHHHTTCCCCEEESSHHHHHHHHSCGGGEEBTT
T ss_pred             CCEEEEecccchHHHHHHHHHHcCCCCCEEeCCCHHHHhhcCCCCCCcCCC
Confidence            9999999999999999999999999998 8999999998764   456554

>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=3.2e-25  Score=161.27  Aligned_cols=100  Identities=26%  Similarity=0.377  Sum_probs=89.2

Q ss_pred             CCCEEEecCChhhHh----------------cCCCCCeEEcCcccccC-CCCCCCHHHHHHHHhc--cCCCCcEEEEcCC
Q 029759           86 AGHRYLDVRTPEEFS----------------AGHATGAINVPYMYRVG-SGMTKNLKFVEEVSTR--FRKHDEIIVGCQS  146 (188)
Q Consensus        86 ~~~~iIDvR~~~ef~----------------~ghIpgAinip~~~~~~-~~~~~~~~~l~~~~~~--l~~~~~ivv~C~s  146 (188)
                      .+.+|||+|+++||.                .||||||+|+|+.+.+. ++.+++++.+++.+..  ++++++||+||++
T Consensus        19 ~~~~lvD~R~~~ey~G~~~~~~~~~~~~~~r~GhIpgA~nlp~~~~~~~~~~~~~~~~~~~~~~~~gi~~d~~vV~yC~~   98 (141)
T d1uara2          19 GKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVNPDGTFKSAEELRALYEPLGITKDKDIVVYCRI   98 (141)
T ss_dssp             TSEEEEECSCHHHHHTCC--------CCCSCCSBCTTCEECCGGGGBCTTSCBCCHHHHHHHHGGGTCCTTSEEEEECSS
T ss_pred             CCcEEEeCCCHHHcCCccCcccccCcccceeeeEeCCccccccccccccccccccHHHHHHHHHHhCCCCCCeEEEEecC
Confidence            348999999999996                79999999999977654 6789999999999877  5789999999999


Q ss_pred             ChHHHHHHHHHHH-CCCCce-EecCcHHhhhh-CCCcccccc
Q 029759          147 GKRSMMAATDLLN-AVSTHA-NYPSKPLTWFL-SNQLLTEEK  185 (188)
Q Consensus       147 G~~a~~a~~~L~~-~G~~~v-~l~GG~~~W~~-~g~p~~~~~  185 (188)
                      |.+|+.+++.|.. +||+++ +|+|||.+|.. .++|+++++
T Consensus        99 G~~As~~~~~l~~~~G~~~v~~ydGs~~eW~~~~~~Pv~~g~  140 (141)
T d1uara2          99 AERSSHSWFVLKYLLGYPHVKNYDGSWTEWGNLVGVPIAKGE  140 (141)
T ss_dssp             HHHHHHHHHHHHTTSCCSCEEEESSHHHHHTTSTTCCCBCSC
T ss_pred             cchHHHHHHHHHHHcCCCCeeEeCCcHHHHhcCCCCCcccCC
Confidence            9999999999985 899998 89999999977 499999875

>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=2.2e-25  Score=161.29  Aligned_cols=105  Identities=24%  Similarity=0.348  Sum_probs=91.0

Q ss_pred             CCcccCHHHHHHHHhCC--CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc--CCCCcEEEEcCC
Q 029759           71 VPTSVPVRVAHELLQAG--HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF--RKHDEIIVGCQS  146 (188)
Q Consensus        71 ~~~~i~~~~~~~~l~~~--~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l--~~~~~ivv~C~s  146 (188)
                      ....|+++++.++++.+  .+|||+|++.||..||||||+|+|..            .+...+..+  +++++||+||.+
T Consensus        22 ~~~~Is~~el~~~l~~~~~~~liDvR~~~e~~~ghIpGAi~ip~~------------~l~~~~~~l~~~~~~~iV~~C~~   89 (136)
T d1yt8a1          22 HTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGA------------ELVLRVAELAPDPRTRVIVNCAG   89 (136)
T ss_dssp             CCCEECHHHHHHHHHTTCSEEEEECSCHHHHHHSBCTTCEECCGG------------GHHHHHHHHCCSTTSEEEEECSS
T ss_pred             CCCccCHHHHHHHHhcCCCcEEEEcCChhhccceecCCchhhhhh------------HHHHHhhcccccccceEEEEcCC
Confidence            34579999999998654  89999999999999999999999984            444444444  467899999999


Q ss_pred             ChHHHHHHHHHHHCCCCc-e-EecCcHHhhhhCCCcccccccC
Q 029759          147 GKRSMMAATDLLNAVSTH-A-NYPSKPLTWFLSNQLLTEEKLK  187 (188)
Q Consensus       147 G~~a~~a~~~L~~~G~~~-v-~l~GG~~~W~~~g~p~~~~~~~  187 (188)
                      |.+|..++..|+.+||++ | +|.||+.+|..+|+|++++..+
T Consensus        90 g~rs~~aa~~L~~~G~~~~V~~L~GG~~~W~~~G~pve~g~~~  132 (136)
T d1yt8a1          90 RTRSIIGTQSLLNAGIPNPVAALRNGTIGWTLAGQQLEHGQTR  132 (136)
T ss_dssp             SHHHHHHHHHHHHTTCSSCEEEETTHHHHHHHTTCCCBCSCCC
T ss_pred             CCchHHHHHHHHHcCCCceEEEeCCcHHHHHHCCCCceeCCCC
Confidence            999999999999999986 7 7999999999999999998765

>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Sulfurtransferase GlpE
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=2.2e-25  Score=155.18  Aligned_cols=99  Identities=22%  Similarity=0.241  Sum_probs=89.2

Q ss_pred             cccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHHH
Q 029759           73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRSM  151 (188)
Q Consensus        73 ~~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a~  151 (188)
                      ..|+++++.++++++ .+|||+|++.||..||||||+|+|.            +.+...+..++++++||+||.+|.+|.
T Consensus         5 ~~Is~~e~~~~l~~~~~~liDvR~~~e~~~ghI~gA~~ip~------------~~l~~~~~~~~~~~~ivv~c~~g~rs~   72 (108)
T d1gmxa_           5 ECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTN------------DTLGAFMRDNDFDTPVMVMCYHGNSSK   72 (108)
T ss_dssp             EEECHHHHHHHHHTTCCEEEECSCHHHHHHCEETTCEECCH------------HHHHHHHHHSCTTSCEEEECSSSSHHH
T ss_pred             CEeCHHHHHHHHHCCCeEEEECCCHHHHHhcCCCCcccccc------------hhHHHHhhhccccCcccccCCCChHHH
Confidence            468999999999764 9999999999999999999999998            577787878899999999999999999


Q ss_pred             HHHHHHHHCCCCce-EecCcHHhhhhCCCccccc
Q 029759          152 MAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEE  184 (188)
Q Consensus       152 ~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~  184 (188)
                      .++..|...||+++ +|.||+.+|.++ +|++..
T Consensus        73 ~~a~~L~~~G~~~v~~l~GG~~~W~~~-~p~e~~  105 (108)
T d1gmxa_          73 GAAQYLLQQGYDVVYSIDGGFEAWQRQ-FPAEVA  105 (108)
T ss_dssp             HHHHHHHHHTCSSEEEETTHHHHHHHH-CGGGEE
T ss_pred             HHHHHHHHcCCCCEEEEcChHHHHHHc-CCCccC
Confidence            99999999999999 799999999654 787643

>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=1.1e-24  Score=161.20  Aligned_cols=103  Identities=13%  Similarity=0.191  Sum_probs=92.4

Q ss_pred             CcccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCChHH
Q 029759           72 PTSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSGKRS  150 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG~~a  150 (188)
                      ...|+++++.++++++ .+|||+|+..||..||||||+|+|..            .+......++++++||+||.+|.+|
T Consensus         4 ~~~Is~~el~~~l~~~~~~ivDvR~~~e~~~ghIpga~~~~~~------------~~~~~~~~~~~~~~vv~~c~~g~rs   71 (157)
T d1yt8a3           4 ADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRS------------QLKQALERLGTAERYVLTCGSSLLA   71 (157)
T ss_dssp             CCEECHHHHHHHTTSTTEEEEECSCHHHHHHCBCTTCEECCGG------------GHHHHHHHHCCCSEEEEECSSSHHH
T ss_pred             CCEECHHHHHHHHhCCCeEEEEeCCHHHHhhcccccceecccc------------cccccccccccCcceeeccCCcchH
Confidence            3479999999999765 99999999999999999999999984            4555556678899999999999999


Q ss_pred             HHHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          151 MMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       151 ~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      ..++..|..+||+++ +|.||+.+|..+|+|+++.+.
T Consensus        72 ~~~a~~l~~~G~~~v~~L~GG~~~W~~aGlp~~~~~~  108 (157)
T d1yt8a3          72 RFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTEDGES  108 (157)
T ss_dssp             HHHHHHHHHHHCSCEEEETTHHHHHHHTTCCCBCSSC
T ss_pred             HHHHHHHhcccCceEEEecCCHHHHhhCCCCCcCCCC
Confidence            999999999999999 799999999999999998654

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=3.3e-24  Score=156.92  Aligned_cols=114  Identities=16%  Similarity=0.077  Sum_probs=96.9

Q ss_pred             ccCHHHHHHHHhC-CCEEEecC----------ChhhHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHHhc--cC
Q 029759           74 SVPVRVAHELLQA-GHRYLDVR----------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FR  135 (188)
Q Consensus        74 ~i~~~~~~~~l~~-~~~iIDvR----------~~~ef~~ghIpgAinip~~~~~~-----~~~~~~~~~l~~~~~~--l~  135 (188)
                      .|+++++.+.|++ +++|||+|          ..++|..||||||+|+++.....     .+.+.+++.+++.+..  ++
T Consensus         4 lVs~~wL~~~L~~~~v~iiD~r~~~~~~~~~~~~~~y~~gHIPGAi~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~Gi~   83 (147)
T d1urha1           4 FVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLNGHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELGVN   83 (147)
T ss_dssp             EECHHHHHTTTTCTTEEEEECCCCCSSCTTCCHHHHHHHSBCTTCEECCGGGGSCSSSSSSSCCCCHHHHHHHHHHTTCC
T ss_pred             cCcHHHHHHHhCCCCeEEEEeeCCCCCccCccHHHHHHhCCccccEEeehhhhccccccccccCCCHHHHHHHHHHhCcC
Confidence            4899999999975 59999999          34689999999999999865432     2456688888888877  57


Q ss_pred             CCCcEEEEcCC-ChHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcccccccC
Q 029759          136 KHDEIIVGCQS-GKRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKLK  187 (188)
Q Consensus       136 ~~~~ivv~C~s-G~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~~  187 (188)
                      ++++||+||.+ +..|+++++.|+.+||++| +|+|||.+|..+|+|++++..+
T Consensus        84 ~~~~vVvY~~~~~~~A~r~~~~L~~~G~~~V~vLdGG~~~W~~~g~pv~~~~~~  137 (147)
T d1urha1          84 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGAVE  137 (147)
T ss_dssp             TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHHHHHTTCCCBBSCCC
T ss_pred             CCCeEEEEeCCCcccchhHHHHHHhhcccceEEeCChHHHHHHcCCCccCCCCC
Confidence            88999999975 5678999999999999999 8999999999999999997653

>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=6.3e-24  Score=149.87  Aligned_cols=101  Identities=24%  Similarity=0.317  Sum_probs=89.3

Q ss_pred             ccCHHHHHHHHhC-CCEEEecCChhhHh-----------cCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc--cCCCCc
Q 029759           74 SVPVRVAHELLQA-GHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDE  139 (188)
Q Consensus        74 ~i~~~~~~~~l~~-~~~iIDvR~~~ef~-----------~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~--l~~~~~  139 (188)
                      .++.+|+....++ +++|||+|++++|.           .||||||+|+|+.....++.+.+.+.++..+..  ++++++
T Consensus         5 ~~~~~ev~~~~~~~~~~liD~R~~~~f~G~~~~~~~~~~~G~Ipga~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   84 (120)
T d1urha2           5 VVKVTDVLLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDELDAIFFGRGVSYDKP   84 (120)
T ss_dssp             BCCHHHHHHHHHHTCSEEEECSCHHHHSSCCCC----CCSSSCTTCEECCGGGGBSSSSBCCHHHHHHHHHTTTCCSSSC
T ss_pred             HccHHHHHHHhhCCCcEEEeCCCHHHcCcccCCcccccccccccccchhchhhcccccccCCHHHhhhhhhhcccCccCc
Confidence            4678888777764 49999999999996           799999999999777778889999999888776  578899


Q ss_pred             EEEEcCCChHHHHHHHHHHHCCCCce-EecCcHHhh
Q 029759          140 IIVGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTW  174 (188)
Q Consensus       140 ivv~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W  174 (188)
                      ||+||++|.+|+.+++.|+.+||+++ +|+|||.+|
T Consensus        85 ii~yC~sG~~A~~~~~~L~~lG~~~v~~y~Gs~~eW  120 (120)
T d1urha2          85 IIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW  120 (120)
T ss_dssp             EEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred             eEEEccchhHHHHHHHHHHHcCCCCceEcCCChhhC
Confidence            99999999999999999999999998 899999999

>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=1.6e-24  Score=157.88  Aligned_cols=113  Identities=14%  Similarity=0.079  Sum_probs=96.9

Q ss_pred             ccCHHHHHHHHhC-CCEEEecCC-hhhHhcCCCCCeEEcCcccccC---CCCCCCHHHHHHHHhcc--CCCCcEEEEcCC
Q 029759           74 SVPVRVAHELLQA-GHRYLDVRT-PEEFSAGHATGAINVPYMYRVG---SGMTKNLKFVEEVSTRF--RKHDEIIVGCQS  146 (188)
Q Consensus        74 ~i~~~~~~~~l~~-~~~iIDvR~-~~ef~~ghIpgAinip~~~~~~---~~~~~~~~~l~~~~~~l--~~~~~ivv~C~s  146 (188)
                      .|+++++++.+++ +++|||+|. .++|..||||||+|+|+.....   .+++.+.+.+++.+..+  +++++||+||++
T Consensus         8 lVs~~~l~~~l~~~~v~iiDvr~~~~~y~~gHIPgAi~~~~~~~~~~~~~~~l~~~~~l~~~~~~~Gi~~~~~iVvy~~~   87 (143)
T d1uara1           8 LVSTDWVQEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFISEEEFAKLMERLGISNDTTVVLYGDK   87 (143)
T ss_dssp             EECHHHHHTTTTCTTEEEEEECSSTTHHHHCBCTTCEEECHHHHHBCSSSSSBCCHHHHHHHHHHTTCCTTCEEEEECHH
T ss_pred             cCcHHHHHHHhCCCCeEEEECCCCHHHHhcCCCCCcccccccccccccccccchhhHHHHHHhhhhccCCCceEEEecCC
Confidence            5899999998875 489999995 7889999999999999864432   35677888899888874  788999999987


Q ss_pred             C-hHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          147 G-KRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       147 G-~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      | ..|+++++.|+.+||++| +|+|||.+|..+|+|++++..
T Consensus        88 ~~~~a~~~~~~l~~~G~~~V~vldGG~~~W~~~g~p~~~~~~  129 (143)
T d1uara1          88 NNWWAAYAFWFFKYNGHKDVRLMNGGRQKWVEEGRPLTTEVP  129 (143)
T ss_dssp             HHHHHHHHHHHHHHTTCSCEEEETTHHHHHHHHTCCCBCCCC
T ss_pred             CcccchhHHHHHHHhCCceEEEEcCcHHHHHHCCCCccCCCC
Confidence            6 468899999999999999 899999999999999998644

>d1e0ca1 c.46.1.2 (A:1-135) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Sulfurtransferase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.89  E-value=3.8e-23  Score=148.23  Aligned_cols=116  Identities=16%  Similarity=0.099  Sum_probs=92.0

Q ss_pred             CCcccCHHHHHHHHhC-CCEEEecCChhhHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHHhc--cCCCCcEEE
Q 029759           71 VPTSVPVRVAHELLQA-GHRYLDVRTPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR--FRKHDEIIV  142 (188)
Q Consensus        71 ~~~~i~~~~~~~~l~~-~~~iIDvR~~~ef~~ghIpgAinip~~~~~~-----~~~~~~~~~l~~~~~~--l~~~~~ivv  142 (188)
                      .+..|+++++.+++.+ +++|||+|+++||..||||||+|+|+.+...     .........+......  ...+..+++
T Consensus         7 ~p~lIs~~el~~~l~~~~~viiDvR~~~ey~~gHIpgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   86 (135)
T d1e0ca1           7 LPLVIEPADLQARLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPPAPGLQPPREQLESLFGELGHRPEAVYVV   86 (135)
T ss_dssp             SCSEECHHHHHTTTTCTTEEEEECSCHHHHHHCBSTTCEECCGGGGSCCCTTCTTSCCCHHHHHHHHHHHTCCTTCEEEE
T ss_pred             CCcEeeHHHHHHHhcCCCeEEEECCCHHHHhcccCccccccchhhhhhcccccchhhcchhhhhhhhccccccccccccc
Confidence            3556899999999976 4999999999999999999999999865442     2233344544444333  345566777


Q ss_pred             EcC-CChHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          143 GCQ-SGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       143 ~C~-sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      ||. ++.++.++++.|+.+||++| +|+||+.+|.++|+|++++.+
T Consensus        87 ~~~~~~~~~~~~~~~l~~~G~~~V~~l~GG~~~W~~~g~p~~~~~p  132 (135)
T d1e0ca1          87 YDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLTAWLAEDRPLSRELP  132 (135)
T ss_dssp             ECSSSSHHHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCCCC
T ss_pred             cccccCccchhhHHHHHhccCCCEEEecChHHHHHHCCCCCCCCCC
Confidence            765 46889999999999999999 799999999999999998654

>d1rhsa1 c.46.1.2 (A:1-149) Rhodanese {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Rhodanese
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.89  E-value=3.5e-23  Score=151.75  Aligned_cols=116  Identities=14%  Similarity=0.037  Sum_probs=97.5

Q ss_pred             CcccCHHHHHHHHhC-----CCEEEecC--------ChhhHhcCCCCCeEEcCcccccC-----CCCCCCHHHHHHHHhc
Q 029759           72 PTSVPVRVAHELLQA-----GHRYLDVR--------TPEEFSAGHATGAINVPYMYRVG-----SGMTKNLKFVEEVSTR  133 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~-----~~~iIDvR--------~~~ef~~ghIpgAinip~~~~~~-----~~~~~~~~~l~~~~~~  133 (188)
                      +..|+++++.+.|++     +++|||+|        ..++|..||||||+|+++.....     .+.+.+.+.+.+.+..
T Consensus         7 ~~lVs~~wL~~~L~~~~~~~~~~IiD~r~~~~~~~~~~~~y~~gHIPGAv~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   86 (149)
T d1rhsa1           7 RALVSTKWLAESVRAGKVGPGLRVLDASWYSPGTREARKEYLERHVPGASFFDIEECRDKASPYEVMLPSEAGFADYVGS   86 (149)
T ss_dssp             CSEECHHHHHHHHHTTCCBTTEEEEECCCCCTTSCCHHHHHHHSBCTTCEECCTTTSSCTTSSSSSCCCCHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHhccCCCCCEEEEEecCcCCCCcchHHHHHHhcccCceeccHHhhcccccchhhhhhhhHHHHHHHhh
Confidence            456899999999964     48999999        46789999999999999864332     3556677888888776


Q ss_pred             --cCCCCcEEEEcCC---ChHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCcccccccC
Q 029759          134 --FRKHDEIIVGCQS---GKRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKLK  187 (188)
Q Consensus       134 --l~~~~~ivv~C~s---G~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~~  187 (188)
                        ++++++||+||++   +..|.++++.|+.+||++| +|+||+.+|.++|+|++++..+
T Consensus        87 ~Gi~~~~~vVvy~~~~~~~~~a~r~~w~L~~~G~~~V~vLdGG~~~W~~~G~pv~~~~~~  146 (149)
T d1rhsa1          87 LGISNDTHVVVYDGDDLGSFYAPRVWWMFRVFGHRTVSVLNGGFRNWLKEGHPVTSEPSR  146 (149)
T ss_dssp             TTCCTTCEEEEECCCSSSCSSHHHHHHHHHHTTCCCEEEETTHHHHHHHTTCCCBCSCCC
T ss_pred             hhccCCceeEEeeccCCcchhhhHHHHHHHHcCCCceEEeCCcHHHHHHCcCcccCCCCC
Confidence              5788999999975   4678999999999999999 8999999999999999987653

>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Single-domain sulfurtransferase
domain: Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud)
species: Wolinella succinogenes [TaxId: 844]

Probab=99.89  E-value=2e-23  Score=150.99  Aligned_cols=102  Identities=18%  Similarity=0.198  Sum_probs=87.5

Q ss_pred             cccCHHHHHHHHhC--CCEEEecCChhhHhcCC---CCCeEEcCcccccCCCCCCCHHHHHHHHh--ccCCCCcEEEEcC
Q 029759           73 TSVPVRVAHELLQA--GHRYLDVRTPEEFSAGH---ATGAINVPYMYRVGSGMTKNLKFVEEVST--RFRKHDEIIVGCQ  145 (188)
Q Consensus        73 ~~i~~~~~~~~l~~--~~~iIDvR~~~ef~~gh---IpgAinip~~~~~~~~~~~~~~~l~~~~~--~l~~~~~ivv~C~  145 (188)
                      ..|+++++.+++++  +++|||||++.||..+|   |+||+|+|..            .+...+.  .++++++||+||.
T Consensus        23 ~~Isp~e~~~ll~~~~~~~lIDvR~~~E~~~~hip~i~~a~~ip~~------------~l~~~~~~~~~~~~~~ivvyC~   90 (137)
T d1qxna_          23 VMLSPKDAYKLLQENPDITLIDVRDPDELKAMGKPDVKNYKHMSRG------------KLEPLLAKSGLDPEKPVVVFCK   90 (137)
T ss_dssp             EEECHHHHHHHHHHCTTSEEEECCCHHHHHHTCEECCSSEEECCTT------------TSHHHHHHHCCCTTSCEEEECC
T ss_pred             CEEcHHHHHHHHHcCcCEEEEECCcHHHHHHhccccccccccCCcc------------cccccccccccCcccceeeeec
Confidence            46999999999964  39999999999999998   6779999974            2333332  3678999999999


Q ss_pred             CChHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          146 SGKRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       146 sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      +|.+|..++..|..+||++| +|.||+.+|..+|+|++....
T Consensus        91 ~G~rs~~aa~~L~~~G~~nV~~l~GG~~~W~~~g~P~~~~~~  132 (137)
T d1qxna_          91 TAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGLPSLDRSH  132 (137)
T ss_dssp             SSSCHHHHHHHHHHHTCSCEEEESSCHHHHHHTTCCEECCCC
T ss_pred             ccchHHHHHHHHHHcCCCcEEEecCHHHHHHHcCCCCCCCCc
Confidence            99999999999999999999 799999999999999987543

>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=4.3e-23  Score=141.46  Aligned_cols=93  Identities=20%  Similarity=0.125  Sum_probs=78.6

Q ss_pred             ccCHHHHHHHHhC--CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc--cCCCCcEEEEcCCChH
Q 029759           74 SVPVRVAHELLQA--GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQSGKR  149 (188)
Q Consensus        74 ~i~~~~~~~~l~~--~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~--l~~~~~ivv~C~sG~~  149 (188)
                      ..|.+++++++.+  +.+|||+|+++||..||||||+|+|..            .+......  .+++++||+||.+|.+
T Consensus         3 v~S~~~l~~~l~~~~~~~liDvR~~~e~~~ghIpgAi~~~~~------------~~~~~~~~~~~~~~~~vv~~~~~g~~   70 (101)
T d1yt8a2           3 VRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLS------------RLELEIHARVPRRDTPITVYDDGEGL   70 (101)
T ss_dssp             EECHHHHHHHHHHTCCBEEEECSCHHHHTTSBCTTCEECCGG------------GHHHHHHHHSCCTTSCEEEECSSSSH
T ss_pred             cCcHHHHHHHHHCCCCeEEEECCCHHHHHhccCCCccccccc------------chhhhhhhcccccCceeeeccchhhh
Confidence            3678899988743  489999999999999999999999984            22232222  3467899999999999


Q ss_pred             HHHHHHHHHHCCCCce-EecCcHHhhhhCC
Q 029759          150 SMMAATDLLNAVSTHA-NYPSKPLTWFLSN  178 (188)
Q Consensus       150 a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g  178 (188)
                      |..++..|+.+||++| +|+||+.+|.++|
T Consensus        71 s~~~~~~l~~~G~~nV~~l~GG~~~W~~aG  100 (101)
T d1yt8a2          71 APVAAQRLHDLGYSDVALLDGGLSGWRNAG  100 (101)
T ss_dssp             HHHHHHHHHHTTCSSEEEETTHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCcEEEeCChHHHHHHCc
Confidence            9999999999999999 7999999999886

>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.89  E-value=4.2e-24  Score=155.01  Aligned_cols=101  Identities=15%  Similarity=0.194  Sum_probs=84.5

Q ss_pred             HhCCCEEEecCChhhHh-----------cCCCCCeEEcCcccccC----CCCCCCHHHHHHHHhc-------cCCCCcEE
Q 029759           84 LQAGHRYLDVRTPEEFS-----------AGHATGAINVPYMYRVG----SGMTKNLKFVEEVSTR-------FRKHDEII  141 (188)
Q Consensus        84 l~~~~~iIDvR~~~ef~-----------~ghIpgAinip~~~~~~----~~~~~~~~~l~~~~~~-------l~~~~~iv  141 (188)
                      +..+.+|||+|+++||.           .||||||+|+|+...+.    ...+++++.+.+.+..       +.++++||
T Consensus         9 ~~p~~vlvD~R~~~ef~G~~~~~~~~~~~GHIpgAvnip~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV   88 (139)
T d1okga2           9 IPPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRHNIMTVVQGAGDAADLSSFV   88 (139)
T ss_dssp             SCTTCCEEECSCHHHHTCCSSCCTTCSSSSCSTTCEECCGGGGEECCSSSCEECCHHHHHHHHHTTCC-----CCCTTSE
T ss_pred             CCCCeEEEeCCCHHHhCCcCCCcccCCcCceeCCCeeccchhhccccccccccCCHHHhhhhhhhhhhhccCCCCCCeEE
Confidence            34568999999999997           79999999999865442    3457788888777653       34568999


Q ss_pred             EEcCCChHHHHHHHHHHHCCCCce-EecCcHHhhhh-CCCccccc
Q 029759          142 VGCQSGKRSMMAATDLLNAVSTHA-NYPSKPLTWFL-SNQLLTEE  184 (188)
Q Consensus       142 v~C~sG~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~-~g~p~~~~  184 (188)
                      +||++|.+|+.+++.|+.+||+++ +|+|||.+|.. .++|+++.
T Consensus        89 ~yC~sG~~Aa~~~~~L~~~G~~~v~vydGsw~eW~~~~~~Pv~~~  133 (139)
T d1okga2          89 FSCGSGVTACINIALVHHLGLGHPYLYCGSWSEYSGLFRPPIMRS  133 (139)
T ss_dssp             EECSSSSTHHHHHHHHHHTTSCCCEECSSHHHHHHHHTHHHHHHH
T ss_pred             EECCCcHHHHHHHHHHHHhCCCCccCCCCCHHHHhCCCCCCeeec
Confidence            999999999999999999999988 89999999976 58899874

>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: Thiosulfate sulfurtransferase PA2603
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=9e-23  Score=146.21  Aligned_cols=98  Identities=20%  Similarity=0.171  Sum_probs=82.2

Q ss_pred             CcccCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc--cCCCCcEEEEcCC
Q 029759           72 PTSVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR--FRKHDEIIVGCQS  146 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~~---~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~--l~~~~~ivv~C~s  146 (188)
                      ...|+++++.++++++   ++|||+|+++||..||||||+|+|+.            .+......  .+++++||+||.+
T Consensus        22 ~~~I~~~e~~~~l~~~~~~~~liDvR~~~e~~~ghipgai~~p~~------------~~~~~~~~~~~~~~~~ivl~C~~   89 (130)
T d1yt8a4          22 VERLDLAGLAQWQDEHDRTTYLLDVRTPEEYEAGHLPGSRSTPGG------------QLVQETDHVASVRGARLVLVDDD   89 (130)
T ss_dssp             CEEECHHHHHHHHHCTTSCEEEEECSCHHHHHHCBCTTCEECCHH------------HHHHSHHHHCCSBTCEEEEECSS
T ss_pred             CcccCHHHHHHHHHccCCCEEEEECCCcHHHhcCccCCccccccc------------ccccccccccCCccceEEeecCC
Confidence            3479999999999753   68999999999999999999999984            34333322  4688999999999


Q ss_pred             ChHHHHHHHHHHHCCCCceEecCcHHhhhhCCCcc
Q 029759          147 GKRSMMAATDLLNAVSTHANYPSKPLTWFLSNQLL  181 (188)
Q Consensus       147 G~~a~~a~~~L~~~G~~~v~l~GG~~~W~~~g~p~  181 (188)
                      |.||..++..|+.+||+..+|.||+.+|..++...
T Consensus        90 G~rS~~aa~~L~~~G~~v~~l~GG~~aw~~~~g~~  124 (130)
T d1yt8a4          90 GVRANMSASWLAQMGWQVAVLDGLSEADFSERGAW  124 (130)
T ss_dssp             SSHHHHHHHHHHHTTCEEEEECSCCGGGCCBCSSC
T ss_pred             CccHHHHHHHHHHcCCCeEEEcCchHHHHHhcCCC
Confidence            99999999999999995448999999998875433

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=99.85  E-value=1.1e-21  Score=144.48  Aligned_cols=111  Identities=9%  Similarity=-0.061  Sum_probs=92.5

Q ss_pred             ccCHHHHHHHHhCCCEEEecC--------ChhhHhcCCCCCeEEcCcccccCC--------CCCCCHHHHHHHHhc--cC
Q 029759           74 SVPVRVAHELLQAGHRYLDVR--------TPEEFSAGHATGAINVPYMYRVGS--------GMTKNLKFVEEVSTR--FR  135 (188)
Q Consensus        74 ~i~~~~~~~~l~~~~~iIDvR--------~~~ef~~ghIpgAinip~~~~~~~--------~~~~~~~~l~~~~~~--l~  135 (188)
                      .|+++++.+.+.+ .+|||+|        ..++|..||||||+++++...+..        .++.+.+.+++.+..  ++
T Consensus         9 lvs~~~L~~~l~d-~~iiD~r~~l~~~~~g~~~Y~~gHIPGA~~~d~~~~l~~~~~~~~~~~~lP~~~~~~~~l~~lGI~   87 (156)
T d1okga1           9 FLDPSEVADHLAE-YRIVDCRYSLKIKDHGSIQYAKEHVKSAIRADVDTNLSKLVPTSTARHPLPPCAEFIDWCMANGMA   87 (156)
T ss_dssp             EECHHHHTTCGGG-SEEEECCCCSSSTTTTTTHHHHCEETTCEECCTTTTSCCCCTTCCCSSCCCCHHHHHHHHHHTTCS
T ss_pred             EeCHHHHHHhcCC-CEEEEeeccCCCCcchHHHHHHcCCCCCeEcCHHHhcccccCCCCCccccCCHHHHHHHHHhcccc
Confidence            6899999988865 9999999        468899999999999998654421        235677888888876  58


Q ss_pred             CCCcEEEEcCC-C-hHHHHHHHHHHHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          136 KHDEIIVGCQS-G-KRSMMAATDLLNAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       136 ~~~~ivv~C~s-G-~~a~~a~~~L~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      ++++||+||+. | ..|++++|.|+.+|+ +| +|+||+.+|.++|+|++++.+
T Consensus        88 ~~~~VVvYd~~~g~~~A~R~~w~L~~~G~-~v~iLdGG~~aW~~~G~pv~t~~p  140 (156)
T d1okga1          88 GELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGFQACKAAGLEMESGEP  140 (156)
T ss_dssp             SSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTTHHHHTTTCCEECSCC
T ss_pred             CCceEEEEeCCCCchHHHHHHHHHHHcCC-eeEEeCCCHHHHHHCCCCCCCCCC
Confidence            89999999865 3 568999999999997 57 899999999999999998654

>d1t3ka_ c.46.1.1 (A:) Dual specificity phosphatase Cdc25 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Dual specificity phosphatase Cdc25
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=3e-22  Score=143.66  Aligned_cols=106  Identities=13%  Similarity=0.089  Sum_probs=82.8

Q ss_pred             cccCHHHHHHHHhCC-CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhccCCCCcEEEEcCCC-hHH
Q 029759           73 TSVPVRVAHELLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRFRKHDEIIVGCQSG-KRS  150 (188)
Q Consensus        73 ~~i~~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l~~~~~ivv~C~sG-~~a  150 (188)
                      ..|+++++.++++++ .+|||+|+++||..||||||+|+|+....        +.+......+.+++++|+||..| .++
T Consensus         8 ~~I~~~el~~~~~~~~v~iIDvR~~~e~~~ghIpgAinip~~~~~--------~~~~~~~~~~~~~~~iv~~c~~~~~~~   79 (132)
T d1t3ka_           8 SYITSTQLLPLHRRPNIAIIDVRDEERNYDGHIAGSLHYASGSFD--------DKISHLVQNVKDKDTLVFHSALSQVRG   79 (132)
T ss_dssp             EEECTTTTTTCCCCTTEEEEEESCSHHHHSSCCCSSEEECCSSSS--------TTHHHHHHTCCSCCEEEESSSCCSSSH
T ss_pred             CEECHHHHHHHHhCCCeEEEEccCHHHHHhccCcccceeeeeccc--------ccccccccccccccceEEEeccccccc
Confidence            468888888888665 88999999999999999999999984211        24555566667788999999754 445


Q ss_pred             HHHHHHH--------HHCCCCce-EecCcHHhhhhCCCccccccc
Q 029759          151 MMAATDL--------LNAVSTHA-NYPSKPLTWFLSNQLLTEEKL  186 (188)
Q Consensus       151 ~~a~~~L--------~~~G~~~v-~l~GG~~~W~~~g~p~~~~~~  186 (188)
                      ..++..|        ...||+++ +|.||+.+|.++|+|+.+...
T Consensus        80 ~~aa~~l~~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~pv~~~~~  124 (132)
T d1t3ka_          80 PTCARRLVNYLDEKKEDTGIKNIMILERGFNGWEASGKPVCRCAE  124 (132)
T ss_dssp             HHHHHHHHHHHHHSSSCCCSSEEEEESSTTHHHHHHSCSSCCCSC
T ss_pred             hHHHHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHcCCCcccCCC
Confidence            4444433        35799999 799999999999999987543

>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.2e-19  Score=131.31  Aligned_cols=95  Identities=18%  Similarity=0.262  Sum_probs=75.9

Q ss_pred             CcccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhcc------CCCC
Q 029759           72 PTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTRF------RKHD  138 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~-------~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~l------~~~~  138 (188)
                      ...|+++++.+++++       +++|||+|++.||..||||||+|+|..           +.+...+...      .+..
T Consensus        22 ~k~Is~~~l~~ll~~~~~~~~~~~~IIDvR~~~Ey~~gHI~gAinip~~-----------~~~~~~l~~~~~~~~~~~~~   90 (161)
T d1c25a_          22 LKYISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHME-----------EEVEDFLLKKPIVPTDGKRV   90 (161)
T ss_dssp             SCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHTTTSCCCCCTTSEE
T ss_pred             CCccCHHHHHHHHhhhhhcccCCEEEEECCCHHHHHhhhcCCcEEcCcH-----------HHHHHHHhhhhhhhhhccCC
Confidence            346999999999864       389999999999999999999999974           4444443221      2335


Q ss_pred             cEEEEcC-CChHHHHHHHHHHHC----------CCCce-EecCcHHhhhhC
Q 029759          139 EIIVGCQ-SGKRSMMAATDLLNA----------VSTHA-NYPSKPLTWFLS  177 (188)
Q Consensus       139 ~ivv~C~-sG~~a~~a~~~L~~~----------G~~~v-~l~GG~~~W~~~  177 (188)
                      .||+||. +|.++..++..|+..          ||++| +|.||+.+|...
T Consensus        91 ~vV~yc~~s~~rs~~~a~~l~~~~~~~~~~~~~g~~~V~vL~GG~~~w~~~  141 (161)
T d1c25a_          91 IVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPELYVLKGGYKEFFMK  141 (161)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSSCCEEEETTHHHHHHHH
T ss_pred             eEEEEeccccccHHHHHHHHHHHHHhhccccccCCCeEEEECCcHHHHHHH
Confidence            6899997 688999998888753          99999 799999999775

>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: CDC25b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.7e-17  Score=121.54  Aligned_cols=95  Identities=19%  Similarity=0.237  Sum_probs=74.3

Q ss_pred             CcccCHHHHHHHHhC-------CCEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHHhc-------cCCC
Q 029759           72 PTSVPVRVAHELLQA-------GHRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVSTR-------FRKH  137 (188)
Q Consensus        72 ~~~i~~~~~~~~l~~-------~~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~~~-------l~~~  137 (188)
                      ...|+++++.+++++       +++|||+|++.||..|||+||+|+|..           +........       .++.
T Consensus        22 ~k~Isp~eL~~ll~~~~~~~~~~~lIID~R~~~Ey~~gHI~gAiNi~~~-----------~~~~~~~~~~~~~~~~~~~~   90 (174)
T d1ymka1          22 LKYISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPLE-----------RDAESFLLKSPIAPCSLDKR   90 (174)
T ss_dssp             SCEECHHHHHHHHTTTTTTTEEEEEEEECSCHHHHHTCEETTCEECCSH-----------HHHHHHHHTTTCCC----CE
T ss_pred             CcEeCHHHHHHHHhhhhhcccCCEEEEECCCchhhhhhhcCCccccCch-----------HHHHHHHHHhhhhhhhhccC
Confidence            346999999999964       389999999999999999999999984           333332211       2344


Q ss_pred             CcEEEEcC-CChHHHHHHHHHHH----------CCCCce-EecCcHHhhhhC
Q 029759          138 DEIIVGCQ-SGKRSMMAATDLLN----------AVSTHA-NYPSKPLTWFLS  177 (188)
Q Consensus       138 ~~ivv~C~-sG~~a~~a~~~L~~----------~G~~~v-~l~GG~~~W~~~  177 (188)
                      +.||+||. ++.++..++..|+.          .||++| +|.||+.+|...
T Consensus        91 ~~vV~yc~~s~~r~~~~a~~l~~~~~~~~~~~~~g~~~VyiL~GGf~~f~~~  142 (174)
T d1ymka1          91 VILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGYKEFFPQ  142 (174)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHHHHHHTSSTTCCSCCCEEEETTHHHHHTTT
T ss_pred             ceEEEEeCCCCchHHHHHHHHHHHHHHhhhccccCCceEEEecCcHHHHHHh
Confidence            67999997 46788888888864          499999 799999999765

>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase 8, USP8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Ubiquitin carboxyl-terminal hydrolase 8, USP8
domain: Ubiquitin carboxyl-terminal hydrolase 8, USP8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.9e-16  Score=111.26  Aligned_cols=104  Identities=7%  Similarity=0.048  Sum_probs=71.1

Q ss_pred             ccCHHHHHHHHhCC---CEEEecCChhhHhcCCCCCeEEcCcccccCCCCC-----CCHHHHHHHHhccCCCCcEEEEcC
Q 029759           74 SVPVRVAHELLQAG---HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMT-----KNLKFVEEVSTRFRKHDEIIVGCQ  145 (188)
Q Consensus        74 ~i~~~~~~~~l~~~---~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~-----~~~~~l~~~~~~l~~~~~ivv~C~  145 (188)
                      .|+++++.+++++.   .+|||+|+.+||..+|||||+|+|+.........     .........+......+.||+||.
T Consensus         2 ~Is~~eL~~~l~~~~~~~liiDvR~~~ey~~~hI~gAinip~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~iV~yd~   81 (135)
T d2gwfa1           2 AITAKELYTMMTDKNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVVLLDW   81 (135)
T ss_dssp             EECHHHHHHHHHSTTSCEEEEECSCHHHHHHSCBTTCEECCGGGCCTTCCHHHHHHTSCHHHHHHHHTTTTSSEEEEECS
T ss_pred             eECHHHHHHHHhcCCCCEEEEEecCCccccCCccCCeEEeCHHHcccccchhhhhhhhhHHHHHHHhccCCCCeEEEEeC
Confidence            58999999999753   8999999999999999999999997533221110     011222233344456788999998


Q ss_pred             CChH-H---H----HHHHHHH-----HCCCCce-EecCcHHhhhhC
Q 029759          146 SGKR-S---M----MAATDLL-----NAVSTHA-NYPSKPLTWFLS  177 (188)
Q Consensus       146 sG~~-a---~----~a~~~L~-----~~G~~~v-~l~GG~~~W~~~  177 (188)
                      .+.. .   .    .....|.     ..|+.++ +|+||+.+|...
T Consensus        82 ~s~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~iL~GG~~~w~~~  127 (135)
T d2gwfa1          82 FSSAKDLQIGTTLRSLKDALFKWESKTVLRNEPLVLEGGYENWLLC  127 (135)
T ss_dssp             SCCGGGCCTTCHHHHHHHHHHTSCCSSCCSSCCEEETTHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHhcccccccCCCcEEEEechHHHHHHh
Confidence            7522 1   1    1223333     2466777 899999999887

>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Cell cycle control phosphatase, catalytic domain
domain: Erk2 binding domain of Mapk phosphatase mkp-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-15  Score=111.30  Aligned_cols=104  Identities=16%  Similarity=0.047  Sum_probs=71.2

Q ss_pred             cccCHHHHHHHHh---CCCEEEecCChhhHhcCCCCCeEEcCcccccC----------CCCCCCHHHHHHHHhccCCCCc
Q 029759           73 TSVPVRVAHELLQ---AGHRYLDVRTPEEFSAGHATGAINVPYMYRVG----------SGMTKNLKFVEEVSTRFRKHDE  139 (188)
Q Consensus        73 ~~i~~~~~~~~l~---~~~~iIDvR~~~ef~~ghIpgAinip~~~~~~----------~~~~~~~~~l~~~~~~l~~~~~  139 (188)
                      ..++++++.+.++   .+.+|||+|++.||..||||||+|+|+...+.          ...+.+ ......+.....++.
T Consensus        16 ~~~s~e~L~~~l~~~~~~~lilDvR~~~ey~~~HI~gAini~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   94 (154)
T d1hzma_          16 ISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTR-GEDRDRFTRRCGTDT   94 (154)
T ss_dssp             SBSCCCCHHHHHHHCSSSCEEECCSTTHHHHHHTSSSCCCCCCSSHHHHTBCCSCCCTTTTSTT-SHHHHHHHHSTTSSC
T ss_pred             CccCHHHHHHHHhcCCCCEEEEECCCHHHHhcCCCCCCcccCcHHHHhhhccCCcccccccCCc-HHHHHHHhhcCCCCe
Confidence            3588899999885   24999999999999999999999999753321          112222 233333444556788


Q ss_pred             EEEEcCCCh----------HHHHHHHHHHHCCCCceEecCcHHhhhhC
Q 029759          140 IIVGCQSGK----------RSMMAATDLLNAVSTHANYPSKPLTWFLS  177 (188)
Q Consensus       140 ivv~C~sG~----------~a~~a~~~L~~~G~~~v~l~GG~~~W~~~  177 (188)
                      ||+||.++.          +.......|...|++..+|+||+.+|...
T Consensus        95 VVvYd~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~iL~GG~~~w~~~  142 (154)
T d1hzma_          95 VVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEGGFSKFQAE  142 (154)
T ss_dssp             EEECCCSSSSSCSCSSCCSHHHHHHHHHHHTTCCCEECCCCHHHHHHH
T ss_pred             EEEEcCCCchhhhhHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHH
Confidence            999998642          22233444555555433899999999775

>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Putative phosphatase At1g05000
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.59  E-value=0.018  Score=39.70  Aligned_cols=87  Identities=7%  Similarity=-0.056  Sum_probs=50.8

Q ss_pred             CHHHHHHHHhCC-CEEEecCChhhHh------cC-CCCCeEEcCcccccCCCCCCCHHHHHHHHhcc-C-CCCcEEEEcC
Q 029759           76 PVRVAHELLQAG-HRYLDVRTPEEFS------AG-HATGAINVPYMYRVGSGMTKNLKFVEEVSTRF-R-KHDEIIVGCQ  145 (188)
Q Consensus        76 ~~~~~~~~l~~~-~~iIDvR~~~ef~------~g-hIpgAinip~~~~~~~~~~~~~~~l~~~~~~l-~-~~~~ivv~C~  145 (188)
                      +++++..+.+-+ -.|||.|+..+..      .. .| .-+++|.............+.+...+..+ + .+.|++++|.
T Consensus        22 t~~~~~~L~~lgIktIidLr~~~e~~~~~~~~~~~gi-~~~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvlvHC~  100 (151)
T d1xria_          22 DSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGI-RLFQFGIEGNKEPFVNIPDHKIRMALKVLLDEKNHPVLIHCK  100 (151)
T ss_dssp             CHHHHHHHHHHTCSEEEECCSSCCCHHHHHHHHHHTC-EEEECCCCCCCGGGCCCCHHHHHHHHHHHHCGGGCSEEEECS
T ss_pred             CHHHHHHHHHCCCCEEEECCCcchhhcccchhhhcCc-eEeecCccccccccccccHHHHHHHHHHHhcCCCCCEEEEcC
Confidence            566665554446 7999999865432      11 12 23566654322222233345555555443 3 4689999999


Q ss_pred             CC-hH-HHHHHHHHHHCCCC
Q 029759          146 SG-KR-SMMAATDLLNAVST  163 (188)
Q Consensus       146 sG-~~-a~~a~~~L~~~G~~  163 (188)
                      .| .| ...++..|..+|..
T Consensus       101 ~GkdRTG~v~a~~l~~~g~~  120 (151)
T d1xria_         101 RGKHRTGCLVGCLRKLQKWC  120 (151)
T ss_dssp             SSSSHHHHHHHHHHHHTTBC
T ss_pred             CCchHHHHHHHHHHHHcCCC
Confidence            98 34 44566667778876

>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=91.19  E-value=0.12  Score=36.63  Aligned_cols=47  Identities=9%  Similarity=0.020  Sum_probs=38.3

Q ss_pred             HHHHHHhccCCCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759          126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL  172 (188)
Q Consensus       126 ~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~  172 (188)
                      .+.+....+.++.++++||.+-..+...+..|...|+...+|.|+++
T Consensus        20 ll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~   66 (174)
T d1c4oa2          20 LMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELD   66 (174)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCC
T ss_pred             HHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccc
Confidence            44444444457889999999988899999999999999889999864

>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase PtpB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Mycobacterial PtpB-like
domain: Phosphotyrosine protein phosphatase PtpB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.65  E-value=1.4  Score=32.75  Aligned_cols=29  Identities=14%  Similarity=0.208  Sum_probs=22.9

Q ss_pred             CCCCcEEEEcCCC--hHHHHHHHHHHHCCCC
Q 029759          135 RKHDEIIVGCQSG--KRSMMAATDLLNAVST  163 (188)
Q Consensus       135 ~~~~~ivv~C~sG--~~a~~a~~~L~~~G~~  163 (188)
                      ..+.|++++|..|  -+-..++..|..+|.+
T Consensus       148 ~~~~pvL~HCtaGKDRTG~~aallL~llGV~  178 (272)
T d1ywfa1         148 AAGRPVLTHCFAGKDRTGFVVALVLEAVGLD  178 (272)
T ss_dssp             HTTCCEEEECSSSSSHHHHHHHHHHHHTTCC
T ss_pred             ccCCCEEEecCCCCcchHHHHHHHHHHcCCC
Confidence            3578999999988  3456677888889986

>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Leishmania major [TaxId: 5664]

Probab=89.22  E-value=0.14  Score=35.49  Aligned_cols=45  Identities=4%  Similarity=-0.192  Sum_probs=33.7

Q ss_pred             CccCCCchhh-hhcccccccCCceeEEeecCCCcc------------cccccccccccc
Q 029759           21 PVLCPHGNNR-RGLLSLTVDQQRCDNIGFISSKIL------------SFCPKASLRGNL   66 (188)
Q Consensus        21 ~~~~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~------------~~~~~~~~~~~~   66 (188)
                      +.+.|+.+.| +.+..+|++.++.||+|+.....+            |+ ++..++|++
T Consensus        68 ~~~lP~~~~~~~~l~~lGI~~~~~VVvYd~~~g~~~A~R~~w~L~~~G~-~v~iLdGG~  125 (156)
T d1okga1          68 RHPLPPCAEFIDWCMANGMAGELPVLCYDDECGAMGGCRLWWMLNSLGA-DAYVINGGF  125 (156)
T ss_dssp             SSCCCCHHHHHHHHHHTTCSSSSCEEEECSSTTTTTHHHHHHHHHHHTC-CEEEETTTT
T ss_pred             ccccCCHHHHHHHHHhccccCCceEEEEeCCCCchHHHHHHHHHHHcCC-eeEEeCCCH
Confidence            3457889999 999999999999999997654322            54 456666665

>d1urha1 c.46.1.2 (A:2-148) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Rhodanese/Cell cycle control phosphatase
superfamily: Rhodanese/Cell cycle control phosphatase
family: Multidomain sulfurtransferase (rhodanese)
domain: 3-mercaptopyruvate sulfurtransferase
species: Escherichia coli [TaxId: 562]

Probab=88.26  E-value=0.17  Score=34.43  Aligned_cols=49  Identities=18%  Similarity=0.096  Sum_probs=39.2

Q ss_pred             CCCCccCCCchhh-hhcccccccCCceeEEeecCCCcc-----------cccccccccccc
Q 029759           18 SLPPVLCPHGNNR-RGLLSLTVDQQRCDNIGFISSKIL-----------SFCPKASLRGNL   66 (188)
Q Consensus        18 ~~~~~~~p~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~-----------~~~~~~~~~~~~   66 (188)
                      ...+...|+.+.| +.+..+|+++.+.+|+|+......           ||.++..++|++
T Consensus        61 ~~~~~~~p~~~~~~~~l~~~Gi~~~~~vVvY~~~~~~~A~r~~~~L~~~G~~~V~vLdGG~  121 (147)
T d1urha1          61 SPLPHMLPRPETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGL  121 (147)
T ss_dssp             SSSSSCCCCHHHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHH
T ss_pred             ccccccCCCHHHHHHHHHHhCcCCCCeEEEEeCCCcccchhHHHHHHhhcccceEEeCChH
Confidence            3445677888999 999999999999999998765433           777788888877

>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=82.95  E-value=0.62  Score=32.75  Aligned_cols=47  Identities=17%  Similarity=0.121  Sum_probs=37.2

Q ss_pred             HHHHHHhccCCCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759          126 FVEEVSTRFRKHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL  172 (188)
Q Consensus       126 ~l~~~~~~l~~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~  172 (188)
                      .+.+....+.++..++++|.+-..+..++..|...|+....+.|+++
T Consensus        20 ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~   66 (181)
T d1t5la2          20 LIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIK   66 (181)
T ss_dssp             HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCC
T ss_pred             HHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCcc
Confidence            45554444556778999999888888999999999999778888854

>d1fpza_ c.45.1.1 (A:) Kinase associated phosphatase (kap) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Kinase associated phosphatase (kap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.49  E-value=5.1  Score=27.36  Aligned_cols=83  Identities=20%  Similarity=0.236  Sum_probs=46.5

Q ss_pred             HHHHHHHHhCC-CEEEecCChhhHhcCCCCC-----------eEEcCcccccCCCCCCCHHHHHHHHhc----cCCCCcE
Q 029759           77 VRVAHELLQAG-HRYLDVRTPEEFSAGHATG-----------AINVPYMYRVGSGMTKNLKFVEEVSTR----FRKHDEI  140 (188)
Q Consensus        77 ~~~~~~~l~~~-~~iIDvR~~~ef~~ghIpg-----------Ainip~~~~~~~~~~~~~~~l~~~~~~----l~~~~~i  140 (188)
                      .+++..+.+.+ -.||..-+.+|+..-.++.           -+++|+.    +....+.+.+......    +..+++|
T Consensus        37 ~~dl~~L~~~gi~~Vv~L~~~~E~~~~~~~~~~~~~~~~gi~~~~~p~~----D~~~p~~~~~~~~~~~i~~~l~~~~~V  112 (176)
T d1fpza_          37 QKDTEELKSCGIQDIFVFCTRGELSKYRVPNLLDLYQQCGIITHHHPIA----DGGTPDIASCCEIMEELTTCLKNYRKT  112 (176)
T ss_dssp             HHHHHHHHHHTCCEEEECCCHHHHHHTTCTTHHHHHHHTTCEEEECCCC----TTCCCCHHHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHhCCCCEEEEeCChhhhhhcCCCcHHHHHHHcCCEEEeCCcc----CCCchhhHHHHHHHHHHHHHHHcCCeE
Confidence            44455555555 5688887777765443332           3456653    3333344444444333    4567889


Q ss_pred             EEEcCCC-hHH-HHHHHHHHH--CCCC
Q 029759          141 IVGCQSG-KRS-MMAATDLLN--AVST  163 (188)
Q Consensus       141 vv~C~sG-~~a-~~a~~~L~~--~G~~  163 (188)
                      +|+|..| .|+ ..++..|..  .|++
T Consensus       113 ~VHC~~G~gRtg~v~~~~Li~~~~~~~  139 (176)
T d1fpza_         113 LIHSYGGLGRSCLVAACLLLYLSDTIS  139 (176)
T ss_dssp             EEECSSSSSHHHHHHHHHHHHHCSSCC
T ss_pred             EEEecCCCCchHHHHHHHHHHHhcCCC
Confidence            9999987 344 444555554  3544

>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=82.11  E-value=0.48  Score=31.83  Aligned_cols=37  Identities=19%  Similarity=0.126  Sum_probs=31.4

Q ss_pred             CCCcEEEEcCCChHHHHHHHHHHHCCCCceEecCcHH
Q 029759          136 KHDEIIVGCQSGKRSMMAATDLLNAVSTHANYPSKPL  172 (188)
Q Consensus       136 ~~~~ivv~C~sG~~a~~a~~~L~~~G~~~v~l~GG~~  172 (188)
                      ++.+.+++|++-..+..++..|...|+....|.+++.
T Consensus        34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~   70 (138)
T d1jr6a_          34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLD   70 (138)
T ss_dssp             TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCC
T ss_pred             CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccch
Confidence            4567899999988899999999999998777877754

>d1m3ga_ c.45.1.1 (A:) Mapk phosphatase {Human (Homo sapiens), pac-1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: (Phosphotyrosine protein) phosphatases II
superfamily: (Phosphotyrosine protein) phosphatases II
family: Dual specificity phosphatase-like
domain: Mapk phosphatase
species: Human (Homo sapiens), pac-1 [TaxId: 9606]

Probab=81.17  E-value=2.7  Score=27.74  Aligned_cols=81  Identities=14%  Similarity=0.014  Sum_probs=39.5

Q ss_pred             HHhCC-CEEEecCChhhHhcCCCCCeEEcCcccccCCCCCCCHHHHHHHH-hccCCCCcEEEEcCCC-hHHH-H-HHHHH
Q 029759           83 LLQAG-HRYLDVRTPEEFSAGHATGAINVPYMYRVGSGMTKNLKFVEEVS-TRFRKHDEIIVGCQSG-KRSM-M-AATDL  157 (188)
Q Consensus        83 ~l~~~-~~iIDvR~~~ef~~ghIpgAinip~~~~~~~~~~~~~~~l~~~~-~~l~~~~~ivv~C~sG-~~a~-~-a~~~L  157 (188)
                      +.+.+ -.||++-........+...-.++|+.+.........-+...... ..+..+.+|+|+|..| .||. . ++..+
T Consensus        25 L~~~gI~~Iin~~~~~~~~~~~~~~y~~i~i~D~~~~~i~~~~~~~~~~i~~~~~~~~~VlVHC~~G~sRS~~v~~aYLm  104 (145)
T d1m3ga_          25 LQACGITAVLNVSASCPNHFEGLFRYKSIPVEDNQMVEISAWFQEAIGFIDWVKNSGGRVLVHSQAGISRSATICLAYLM  104 (145)
T ss_dssp             HHHHTCSEEEECSSSSSEEECSSSEEEECCCCCSTTCCCTTSHHHHHHHHHHHHHTTCCEEECCSSSSSHHHHHHHHHHH
T ss_pred             HHHcCCcEEEEecCCCCcCCCCceEEEEEeccCCchhhHHHHHHHHHHHHHHhhccCceEEEEcccccccHHHHHHHHHH
Confidence            33345 56888865432222222233567764333222222122222222 2234678999999998 4554 3 33444


Q ss_pred             HHCCCC
Q 029759          158 LNAVST  163 (188)
Q Consensus       158 ~~~G~~  163 (188)
                      ...|++
T Consensus       105 ~~~~~~  110 (145)
T d1m3ga_         105 QSRRVR  110 (145)
T ss_dssp             HTTCCH
T ss_pred             HHhCCC
Confidence            556664