Citrus Sinensis ID: 029772

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
MVYSIRSKSRSIISSMAALKTSVESTFASSPINRPAGSKTMKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVS
ccEEccccccccHHccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcHHcHHHHHHHHHcccccEEEEEEcccccccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHcccc
ccEEEcccccccccccccccccccccHccccccccccccccccccHHHHcHHHHHHHHHHHHHHHHHHHcccccHcHHHHHcHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccEEEEEEccccccHHHHcccccccEEEEEEHHHcccccccccccHHHHHHHHHHHHccc
MVYSIRSKSRSIISSMAALKTSVEstfasspinrpagsktmkLEKIRDAQqgftpvlkrrsfskletsssstaaaltrdrtsykvqdgakscggldYFEEMKQRFLSFKKNKYFEELEHFQNlakaqspkfmviacadsrvcpsyilglqpgetfMIRNVanlvpplengpsetNAALEFAVNTLEVS
mvysirsksrsiISSMAALKTSvestfasspinrpagsktmklekirdaqqgftpvlkrrsfskletsssstaaaltrdrtsykvqdgakscGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVS
MVYsirsksrsiissMAALKTSVESTFASSPINRPAGSKTMKLEKIRDAQQGFTPVLKrrsfskletsssstaaaltrdrtsYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVS
****************************************************************************************AKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVP***********************
**************************************************************************************************EEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEV*
***********IISSMAALKTSVESTFASSPINRPAGSKTMKLEKIRDAQQGFTPVLKRRS***************************AKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVS
************************STFASSPINRPAGSKTMKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVS
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVYSIRSKSRSIISSMAALKTSVESTFASSPINRPAGSKTMKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query188 2.2.26 [Sep-21-2011]
P27140 347 Carbonic anhydrase, chlor no no 0.835 0.452 0.389 3e-23
P17067 328 Carbonic anhydrase, chlor N/A no 0.478 0.274 0.560 2e-22
P46510 330 Carbonic anhydrase OS=Fla N/A no 0.494 0.281 0.510 7e-21
P27141 321 Carbonic anhydrase, chlor N/A no 0.819 0.479 0.386 7e-21
P46511 330 Carbonic anhydrase OS=Fla N/A no 0.494 0.281 0.510 1e-20
P46512 330 Carbonic anhydrase 1 OS=F N/A no 0.494 0.281 0.510 1e-20
P46281 329 Carbonic anhydrase OS=Fla N/A no 0.494 0.282 0.510 2e-20
P42737 259 Carbonic anhydrase 2, chl no no 0.632 0.459 0.393 3e-20
P16016 319 Carbonic anhydrase, chlor N/A no 0.792 0.467 0.366 6e-20
P40880 324 Carbonic anhydrase, chlor N/A no 0.473 0.274 0.488 4e-18
>sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2 Back     alignment and function desciption
 Score =  107 bits (268), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/167 (38%), Positives = 92/167 (55%), Gaps = 10/167 (5%)

Query: 24  ESTFAS-SPINRPAGSKTMKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTS 82
           E  FA+ +PI  P  S+ M  E   +A +    +L       +E     T AA   ++ +
Sbjct: 60  EPVFAAPAPIIAPYWSEEMGTEAYDEAIEALKKLL-------IEKEELKTVAAAKVEQIT 112

Query: 83  YKVQDGAKSCG-GLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRV 141
             +Q G  S     D  E +KQ F+ FKK KY      +  LAK QSPK+MV AC+DSRV
Sbjct: 113 AALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQSPKYMVFACSDSRV 172

Query: 142 CPSYILGLQPGETFMIRNVANLVPPLENGP-SETNAALEFAVNTLEV 187
           CPS++L  QPG+ F++RN+AN+VPP +        AA+E+AV  L+V
Sbjct: 173 CPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKV 219
Reversible hydration of carbon dioxide.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2 SV=2 Back     alignment and function description
>sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2 SV=1 Back     alignment and function description
>sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis PE=2 SV=1 Back     alignment and function description
>sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2 SV=1 Back     alignment and function description
>sp|P42737|CAH2_ARATH Carbonic anhydrase 2, chloroplastic OS=Arabidopsis thaliana GN=CA2 PE=1 SV=2 Back     alignment and function description
>sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia oleracea PE=1 SV=2 Back     alignment and function description
>sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeum vulgare PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query188
302142053 328 unnamed protein product [Vitis vinifera] 0.973 0.557 0.564 1e-48
225459107 351 PREDICTED: carbonic anhydrase, chloropla 0.686 0.367 0.694 4e-44
224081947238 predicted protein [Populus trichocarpa] 0.601 0.474 0.681 5e-41
296087414 301 unnamed protein product [Vitis vinifera] 0.654 0.408 0.658 3e-39
359475658 300 PREDICTED: carbonic anhydrase 2, chlorop 0.654 0.41 0.658 3e-39
116268416 301 hypothetical protein [Prunus persica] 0.920 0.574 0.518 4e-39
224140715256 predicted protein [Populus trichocarpa] 0.680 0.5 0.617 3e-38
224093286198 predicted protein [Populus trichocarpa] 0.489 0.464 0.782 6e-38
356549520 301 PREDICTED: carbonic anhydrase, chloropla 0.824 0.514 0.531 6e-38
255563296 313 carbonic anhydrase, putative [Ricinus co 0.914 0.549 0.483 1e-37
>gi|302142053|emb|CBI19256.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 110/195 (56%), Positives = 128/195 (65%), Gaps = 12/195 (6%)

Query: 5   IRSKSRSIISSMAALK--TSVESTFASSPINR--------PAGSKTMKLEKIRDAQQGFT 54
           IRS  R I S+MAAL+  +    +  S P N         P      KL ++ +   G  
Sbjct: 5   IRSGIRWIGSTMAALRPSSVSFDSSVSGPTNSFMGLLHKSPIFDSRKKLVRVGETHLGSL 64

Query: 55  PVLKRRSFSKLETSSSSTAAA--LTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNK 112
           P +KR   S+LE SS S      L  ++   +++   K+  GLD+FEE+K RFL FKK K
Sbjct: 65  PSVKRNLVSRLEASSDSLGCGQHLMSNKMGNEMESLDKTDQGLDFFEELKHRFLCFKKQK 124

Query: 113 YFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPS 172
           Y EE EHFQ LAKAQSPKFMVIACADSRVCPS ILG QPGE FMIRNVANLVPP+ENGPS
Sbjct: 125 YLEEPEHFQALAKAQSPKFMVIACADSRVCPSNILGFQPGEAFMIRNVANLVPPVENGPS 184

Query: 173 ETNAALEFAVNTLEV 187
           ETNAALEFAVNTLEV
Sbjct: 185 ETNAALEFAVNTLEV 199

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225459107|ref|XP_002283876.1| PREDICTED: carbonic anhydrase, chloroplastic-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224081947|ref|XP_002306538.1| predicted protein [Populus trichocarpa] gi|222855987|gb|EEE93534.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296087414|emb|CBI34003.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359475658|ref|XP_002263870.2| PREDICTED: carbonic anhydrase 2, chloroplastic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|116268416|gb|ABJ96373.1| hypothetical protein [Prunus persica] Back     alignment and taxonomy information
>gi|224140715|ref|XP_002323724.1| predicted protein [Populus trichocarpa] gi|222866726|gb|EEF03857.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224093286|ref|XP_002309867.1| predicted protein [Populus trichocarpa] gi|222852770|gb|EEE90317.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356549520|ref|XP_003543141.1| PREDICTED: carbonic anhydrase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|255563296|ref|XP_002522651.1| carbonic anhydrase, putative [Ricinus communis] gi|223538127|gb|EEF39738.1| carbonic anhydrase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query188
TAIR|locus:2134218 302 BCA5 "beta carbonic anhydrase 0.489 0.304 0.688 4.7e-32
TAIR|locus:2196292 290 BCA6 "beta carbonic anhydrase 0.489 0.317 0.695 2e-31
TAIR|locus:2016109 280 BCA4 "beta carbonic anhydrase 0.489 0.328 0.516 1e-20
TAIR|locus:2084198 347 CA1 "carbonic anhydrase 1" [Ar 0.547 0.296 0.476 2.7e-20
TAIR|locus:2034797 258 BCA3 "beta carbonic anhydrase 0.494 0.360 0.5 1.5e-19
TAIR|locus:2185460 331 CA2 "carbonic anhydrase 2" [Ar 0.489 0.277 0.483 1.5e-19
TIGR_CMR|GSU_2307 211 GSU_2307 "carbonic anhydrase" 0.441 0.393 0.482 1.8e-14
TIGR_CMR|CBU_0139 206 CBU_0139 "carbonic anhydrase" 0.478 0.436 0.430 1.6e-13
TIGR_CMR|CJE_0288 211 CJE_0288 "carbonic anhydrase" 0.436 0.388 0.404 4.4e-13
TIGR_CMR|SPO_3715 216 SPO_3715 "carbonic anhydrase, 0.457 0.398 0.460 1.2e-12
TAIR|locus:2134218 BCA5 "beta carbonic anhydrase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 64/93 (68%), Positives = 80/93 (86%)

Query:    96 DYFEEMKQRFLSFKKNKYF-EELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGET 154
             D F++MKQRFL+FKK KY  ++ EH++NLA AQ+PKF+VIACADSRVCPS +LG QPG+ 
Sbjct:    80 DVFDDMKQRFLAFKKLKYIRDDFEHYKNLADAQAPKFLVIACADSRVCPSAVLGFQPGDA 139

Query:   155 FMIRNVANLVPPLENGPSETNAALEFAVNTLEV 187
             F +RN+ANLVPP E+GP+ET AALEF+VNTL V
Sbjct:   140 FTVRNIANLVPPYESGPTETKAALEFSVNTLNV 172
GO:0004089 "carbonate dehydratase activity" evidence=IEA;ISS
GO:0008270 "zinc ion binding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015976 "carbon utilization" evidence=IEA;ISS
GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA
TAIR|locus:2196292 BCA6 "beta carbonic anhydrase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016109 BCA4 "beta carbonic anhydrase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084198 CA1 "carbonic anhydrase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034797 BCA3 "beta carbonic anhydrase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185460 CA2 "carbonic anhydrase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2307 GSU_2307 "carbonic anhydrase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0139 CBU_0139 "carbonic anhydrase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0288 CJE_0288 "carbonic anhydrase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3715 SPO_3715 "carbonic anhydrase, putative" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.1LOW CONFIDENCE prediction!
4th Layer4.2.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00015113001
RecName- Full=Carbonic anhydrase; EC=4.2.1.1; (236 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00020318001
SubName- Full=Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgu [...] (164 aa)
•    •• 0.943
GSVIVG00003051001
RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (814 aa)
      • 0.578
GSVIVG00030064001
RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (778 aa)
      • 0.573
GSVIVG00021049001
RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (760 aa)
      • 0.572
GSVIVG00024166001
RecName- Full=Phosphorylase; EC=2.4.1.1;; Phosphorylase is an important allosteric enzyme in ca [...] (842 aa)
      • 0.572
GSVIVG00035063001
SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (127 aa)
      • 0.532
PsbP2
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (238 aa)
      • 0.480
GAPDH
SubName- Full=Chromosome chr17 scaffold_246, whole genome shotgun sequence; (317 aa)
      • 0.430

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
PLN03006 301 PLN03006, PLN03006, carbonate dehydratase 9e-45
PLN02154 290 PLN02154, PLN02154, carbonic anhydrase 2e-42
cd00884 190 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) 3e-42
PLN00416 258 PLN00416, PLN00416, carbonate dehydratase 1e-28
PLN03014 347 PLN03014, PLN03014, carbonic anhydrase 4e-26
smart00947154 smart00947, Pro_CA, Carbonic anhydrase 9e-25
cd00382119 cd00382, beta_CA, Carbonic anhydrases (CA) are zin 1e-24
COG0288 207 COG0288, CynT, Carbonic anhydrase [Inorganic ion t 3e-24
PLN03019 330 PLN03019, PLN03019, carbonic anhydrase 2e-23
cd00883 182 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) 3e-22
pfam00484149 pfam00484, Pro_CA, Carbonic anhydrase 2e-19
PRK10437 220 PRK10437, PRK10437, carbonic anhydrase; Provisiona 1e-13
cd03378154 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) 1e-13
PRK15219245 PRK15219, PRK15219, carbonic anhydrase; Provisiona 0.003
cd03379142 cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) 0.003
>gnl|CDD|178583 PLN03006, PLN03006, carbonate dehydratase Back     alignment and domain information 
 Score =  149 bits (377), Expect = 9e-45
 Identities = 71/133 (53%), Positives = 94/133 (70%), Gaps = 4/133 (3%)

Query: 55  PVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYF 114
           P   RR  + L+  +S     LT++     +     +    D F++MKQRFL+FKK KY 
Sbjct: 43  PASFRRKATNLQVMASGKTPGLTQEANGVAIDRQNNT----DVFDDMKQRFLAFKKLKYM 98

Query: 115 EELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSET 174
           ++ EH++NLA AQ+PKF+VIACADSRVCPS +LG QPG+ F +RN+ANLVPP E+GP+ET
Sbjct: 99  DDFEHYKNLADAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTET 158

Query: 175 NAALEFAVNTLEV 187
            AALEF+VNTL V
Sbjct: 159 KAALEFSVNTLNV 171

Length = 301
>gnl|CDD|215111 PLN02154, PLN02154, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|238449 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|177809 PLN00416, PLN00416, carbonate dehydratase Back     alignment and domain information
>gnl|CDD|178588 PLN03014, PLN03014, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|214929 smart00947, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|238224 cd00382, beta_CA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|223365 COG0288, CynT, Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|166660 PLN03019, PLN03019, carbonic anhydrase Back     alignment and domain information
>gnl|CDD|238448 cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|215941 pfam00484, Pro_CA, Carbonic anhydrase Back     alignment and domain information
>gnl|CDD|182460 PRK10437, PRK10437, carbonic anhydrase; Provisional Back     alignment and domain information
>gnl|CDD|239473 cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>gnl|CDD|237927 PRK15219, PRK15219, carbonic anhydrase; Provisional Back     alignment and domain information
>gnl|CDD|239474 cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 188
PLN03019 330 carbonic anhydrase 100.0
PLN03014 347 carbonic anhydrase 100.0
PLN03006 301 carbonate dehydratase 100.0
PLN00416 258 carbonate dehydratase 100.0
PLN02154 290 carbonic anhydrase 99.95
COG0288 207 CynT Carbonic anhydrase [Inorganic ion transport a 99.95
cd00883 182 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-c 99.94
PRK15219 245 carbonic anhydrase; Provisional 99.94
PRK10437 220 carbonic anhydrase; Provisional 99.94
cd00884 190 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-c 99.94
cd03378154 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-c 99.93
KOG1578 276 consensus Predicted carbonic anhydrase involved in 99.91
cd00382119 beta_CA Carbonic anhydrases (CA) are zinc-containi 99.84
cd03379142 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-c 99.78
PF00484153 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Ca 99.78
KOG1578 276 consensus Predicted carbonic anhydrase involved in 95.23
>PLN03019 carbonic anhydrase Back     alignment and domain information 
Probab=100.00  E-value=1.2e-37  Score=277.42  Aligned_cols=140  Identities=36%  Similarity=0.613  Sum_probs=128.5

Q ss_pred             hhhHHHHHHhhHHHhhhccccccccccccchhhhhHHhhcccccCCCCCCcHHHHHHHHHHHHHHhhhhccccchHHHHh
Q 029772           43 LEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQN  122 (188)
Q Consensus        43 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~t~~l~~~~~~~~~~~~~~~~~l~~Ll~gn~~F~~~~~~~~~~~~~~  122 (188)
                      .+.+|++|.+|.++|++|.+++.+|+  +|+.++|+||+.....    ...++++|++|++||++|+...+.+++++|..
T Consensus        75 ~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~  148 (330)
T PLN03019         75 NESYEDAIEALKKLLIEKDDLKDVAA--AKVKKITAELQAASSS----DSKSFDPVERIKEGFVTFKKEKYETNPALYGE  148 (330)
T ss_pred             hhhHHHHHHHHHhhcccccccchHHH--HHHHHhhHHhhhccCC----CCchhHHHHHHHHHHHHHHhccccccHHHHHh
Confidence            34689999999999999999999999  9999999999975431    24579999999999999999998899999999


Q ss_pred             hhhcCCCcEEEEeccCCCCCcccccCCCCCceeeeeeccccCCCCCC-CCcchhHHHHHHHhhcCCC
Q 029772          123 LAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLEN-GPSETNAALEFAVNTLEVS  188 (188)
Q Consensus       123 la~gQ~P~~lvItCsDSRV~pe~Ifg~~pGDlFVvRNaGNiV~~~d~-~~~s~~aSLEYAV~~L~V~  188 (188)
                      ++.+|+|+++||+||||||+|+.|||++|||+||+||+||+|+++|. .+.++.++|||||.+|||+
T Consensus       149 La~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~  215 (330)
T PLN03019        149 LAKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVE  215 (330)
T ss_pred             hccCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCC
Confidence            99999999999999999999999999999999999999999999875 3457899999999999985

>PLN03014 carbonic anhydrase Back     alignment and domain information
>PLN03006 carbonate dehydratase Back     alignment and domain information
>PLN00416 carbonate dehydratase Back     alignment and domain information
>PLN02154 carbonic anhydrase Back     alignment and domain information
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>PRK15219 carbonic anhydrase; Provisional Back     alignment and domain information
>PRK10437 carbonic anhydrase; Provisional Back     alignment and domain information
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site Back     alignment and domain information
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4 Back     alignment and domain information
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
1ekj_A 221 The X-Ray Crystallographic Structure Of Beta Carbon 7e-23
1i6o_A 220 Crystal Structure Of E. Coli Beta Carbonic Anhydras 7e-11
1i6p_A 220 Crystal Structure Of E. Coli Beta Carbonic Anhydras 7e-11
3qy1_A 223 1.54a Resolution Crystal Structure Of A Beta-Carbon 1e-10
3ucj_A 227 Coccomyxa Beta-Carbonic Anhydrase In Complex With A 2e-09
3e3g_A 229 H. Influenzae Beta-Carbonic Anhydrase, Variant G41a 7e-08
2w3n_A 239 Structure And Inhibition Of The Co2-Sensing Carboni 1e-07
2w3q_A 243 Structure And Inhibition Of The Co2-Sensing Carboni 1e-07
3mf3_A 221 Cobalt(Ii)-Substituted Haemophilus Influenzae B-Car 2e-07
2a8c_A 229 Haemophilus Influenzae Beta-Carbonic Anhydrase Leng 2e-07
3e28_A 229 H. Influenzae Beta-carbonic Anhydrase, Variant Y181 2e-07
3e24_A 229 H. Influenzae Beta-Carbonic Anhydrase, Variant W39f 2e-07
1ddz_A 496 X-Ray Structure Of A Beta-Carbonic Anhydrase From T 3e-07
3e2x_A 229 H. Influenzae Beta-Carbonic Anhydrase, Variant V47a 8e-07
3e1v_A 229 H. Influenzae Beta-Carbonic Anhydrase, Variant D44n 1e-06
1ym3_A 215 Crystal Structure Of Carbonic Anhydrase Rv3588c Fro 2e-06
2a5v_A 213 Crystal Structure Of M. Tuberculosis Beta Carbonic 2e-06
3eyx_A 216 Crystal Structure Of Carbonic Anhydrase Nce103 From 1e-05
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic Anhydrase From The C3 Dicot Pisum Sativum Length = 221 Back     alignment and structure 
Iteration: 1

 Score =  103 bits (256), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 51/91 (56%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
Query: 99  EEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIR 158
           E +K  FL FKK KY +    +  LAK QSP FMV AC+DSRVCPS++L  QPGE F++R
Sbjct: 15  ERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVR 74
Query: 159 NVANLVPPLENGP-SETNAALEFAVNTLEVS 188
           NVANLVPP +    + T AA+E+AV  L+VS
Sbjct: 75  NVANLVPPYDQAKYAGTGAAIEYAVLHLKVS 105
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase (Ecca) Length = 220 Back     alignment and structure
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase (Ecca) Length = 220 Back     alignment and structure
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic Anhydrase From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2 Length = 223 Back     alignment and structure
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Acetazolamide Length = 227 Back     alignment and structure
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a Length = 229 Back     alignment and structure
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic Anhydrase Can2 From The Pathogenic Fungus Cryptococcus Neoformans Length = 239 Back     alignment and structure
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic Anhydrase Can2 From The Pathogenic Fungus Cryptococcus Neoformans Length = 243 Back     alignment and structure
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic Anhydrase Length = 221 Back     alignment and structure
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Length = 229 Back     alignment and structure
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f Length = 229 Back     alignment and structure
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f Length = 229 Back     alignment and structure
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red Alga, Porphyridium Purpureum R-1 Length = 496 Back     alignment and structure
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a Length = 229 Back     alignment and structure
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n Length = 229 Back     alignment and structure
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From Mycobacterium Tuberculosis Length = 215 Back     alignment and structure
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic Anhydrase, Rv3588c, Tetrameric Form Length = 213 Back     alignment and structure
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From Saccharomyces Cerevisiae Length = 216 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
1ekj_A 221 Beta-carbonic anhydrase; rossman fold domain, stra 7e-42
3qy1_A 223 Carbonic anhydrase; structural genomics, center fo 4e-36
3e3i_A 229 Carbonic anhydrase 2, beta carbonic anhydrase; all 6e-36
3ucj_A 227 Carbonic anhydrase; alpha/beta, strand exchange, l 2e-35
2w3q_A 243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 6e-35
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 2e-33
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 2e-33
3eyx_A 216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 2e-32
1ym3_A 215 Carbonic anhydrase (carbonate dehydratase) (carbo 4e-29
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 1e-19
3teo_A 204 Carbon disulfide hydrolase; beta carbonic anhydras 9e-18
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 9e-17
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 7e-16
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Length = 221 Back     alignment and structure
 Score =  139 bits (352), Expect = 7e-42
 Identities = 51/94 (54%), Positives = 65/94 (69%), Gaps = 1/94 (1%)

Query: 96  DYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETF 155
           +  E +K  FL FKK KY +    +  LAK QSP FMV AC+DSRVCPS++L  QPGE F
Sbjct: 12  EASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAF 71

Query: 156 MIRNVANLVPPLE-NGPSETNAALEFAVNTLEVS 188
           ++RNVANLVPP +    + T AA+E+AV  L+VS
Sbjct: 72  VVRNVANLVPPYDQAKYAGTGAAIEYAVLHLKVS 105
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Length = 223 Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Length = 229 Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Length = 227 Back     alignment and structure
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Length = 243 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Length = 496 Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Length = 216 Back     alignment and structure
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Length = 215 Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Length = 170 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Length = 204 Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Length = 172 Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} Length = 166 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query188
1ekj_A 221 Beta-carbonic anhydrase; rossman fold domain, stra 99.97
2w3q_A 243 Carbonic anhydrase 2; lyase, inhibition, sulfonami 99.96
1ym3_A 215 Carbonic anhydrase (carbonate dehydratase) (carbo 99.96
3qy1_A 223 Carbonic anhydrase; structural genomics, center fo 99.96
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 99.95
3e3i_A 229 Carbonic anhydrase 2, beta carbonic anhydrase; all 99.95
3ucj_A 227 Carbonic anhydrase; alpha/beta, strand exchange, l 99.94
3eyx_A 216 Carbonic anhydrase; rossmann fold, cytoplasm, lyas 99.94
1ylk_A172 Hypothetical protein RV1284/MT1322; homodimer, alp 99.94
1ddz_A 496 Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A 99.93
1g5c_A170 Beta-carbonic anhydrase; zinc, hepes, lyase; HET: 99.91
3las_A166 Putative carbonic anhydrase; zinc binding, LYAS; H 99.91
3teo_A 204 Carbon disulfide hydrolase; beta carbonic anhydras 99.85
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1 Back     alignment and structure
Probab=99.97  E-value=5.8e-31  Score=221.45  Aligned_cols=96  Identities=53%  Similarity=0.830  Sum_probs=87.1

Q ss_pred             cHHHHHHHHHHHHHHhhhhccccchHHHHhhhhcCCCcEEEEeccCCCCCcccccCCCCCceeeeeeccccCCCCCCC-C
Q 029772           93 GGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENG-P  171 (188)
Q Consensus        93 ~~~~~l~~Ll~gn~~F~~~~~~~~~~~~~~la~gQ~P~~lvItCsDSRV~pe~Ifg~~pGDlFVvRNaGNiV~~~d~~-~  171 (188)
                      .++++|++|++||++|.+..+.+++++|++|+.+|+|+++||+||||||+|+.|||++|||+||+||+||+|+++|.+ .
T Consensus         9 ~p~~~l~~L~~gN~~f~~~~~~~~~~~~~~La~gQ~P~~lvi~CsDSRV~pe~i~~~~pGdlFVvRNaGN~V~~~d~~~~   88 (221)
T 1ekj_A            9 PKSEASERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANLVPPYDQAKY   88 (221)
T ss_dssp             ---CHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCCCSEEEEEECCGGGCHHHHSCCCTTSEEEEEEGGGCCCCSCTTTC
T ss_pred             CHHHHHHHHHHHHHHHHhcCcccCHHHHHhhccCCCCcEEEEEeCCCCCCHHHHhCCCCCcEEEEeccCcccCccccccc
Confidence            467889999999999999988888999999999999999999999999999999999999999999999999998753 2


Q ss_pred             cchhHHHHHHHhhcCCC
Q 029772          172 SETNAALEFAVNTLEVS  188 (188)
Q Consensus       172 ~s~~aSLEYAV~~L~V~  188 (188)
                      .++.+||||||.+|||+
T Consensus        89 ~~~~asleyAv~~L~v~  105 (221)
T 1ekj_A           89 AGTGAAIEYAVLHLKVS  105 (221)
T ss_dssp             HHHHHHHHHHHHTSCCS
T ss_pred             chhHHHHHHHHHhcCCC
Confidence            36789999999999986
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A Back     alignment and structure
>1ym3_A Carbonic anhydrase (carbonate dehydratase) (carbo dehydratase); Zn protein, structural proteomics in europe, spine, structur genomics; 1.75A {Mycobacterium tuberculosis} PDB: 2a5v_A Back     alignment and structure
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} SCOP: c.53.2.1 PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>3e3i_A Carbonic anhydrase 2, beta carbonic anhydrase; allosteric site mutant, lyase, META; 2.00A {Haemophilus influenzae} SCOP: c.53.2.1 PDB: 3e3g_A 2a8d_A 2a8c_A 3e3f_A 3e31_A 3e2x_A 3e2a_A 3e28_A 3e2w_A 3e1w_A 3e1v_A 3e24_A 3mf3_A Back     alignment and structure
>3ucj_A Carbonic anhydrase; alpha/beta, strand exchange, lyase-lyase inhibitor complex; HET: AZM; 1.85A {Coccomyxa SP} PDB: 3uck_A 3ucm_A 3ucn_A 3uco_A Back     alignment and structure
>3eyx_A Carbonic anhydrase; rossmann fold, cytoplasm, lyase, metal-binding, nucleus, zinc; 2.04A {Saccharomyces cerevisiae} Back     alignment and structure
>1ylk_A Hypothetical protein RV1284/MT1322; homodimer, alpha/beta-fold, structural proteomics in spine, structural genomics, unknown function; 2.00A {Mycobacterium tuberculosis} Back     alignment and structure
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium purpureum} SCOP: c.53.2.1 c.53.2.1 Back     alignment and structure
>1g5c_A Beta-carbonic anhydrase; zinc, hepes, lyase; HET: EPE; 2.10A {Methanothermobacterthermautotrophicus} SCOP: c.53.2.1 Back     alignment and structure
>3las_A Putative carbonic anhydrase; zinc binding, LYAS; HET: GOL; 1.40A {Streptococcus mutans} SCOP: c.53.2.0 Back     alignment and structure
>3teo_A Carbon disulfide hydrolase; beta carbonic anhydrase fold, carbon disulfide hydrolysis; HET: PE3; 2.40A {Acidianus SP} PDB: 3ten_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 188
d1ekja_ 210 c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum 9e-29
d1i6pa_ 214 c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia 3e-26
d1ddza2 239 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red 3e-25
d1ddza1 242 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red a 3e-23
d1g5ca_169 c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Me 3e-14
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Length = 210 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Pea (Pisum sativum) [TaxId: 3888]

 Score =  104 bits (259), Expect = 9e-29
 Identities = 50/91 (54%), Positives = 63/91 (69%), Gaps = 1/91 (1%)

Query: 98  FEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMI 157
            E +K  FL FKK KY +    +  LAK QSP FMV AC+DSRVCPS++L  QPGE F++
Sbjct: 3   SERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVV 62

Query: 158 RNVANLVPPLE-NGPSETNAALEFAVNTLEV 187
           RNVANLVPP +    + T AA+E+AV  L+V
Sbjct: 63  RNVANLVPPYDQAKYAGTGAAIEYAVLHLKV 93
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 239 Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Length = 242 Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 169 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query188
d1ddza2 239 beta-carbonic anhydrase {Red alga (Porphyridium pu 99.97
d1ekja_ 210 beta-carbonic anhydrase {Pea (Pisum sativum) [TaxI 99.97
d1i6pa_ 214 beta-carbonic anhydrase {Escherichia coli [TaxId: 99.96
d1ddza1 242 beta-carbonic anhydrase {Red alga (Porphyridium pu 99.96
d1g5ca_169 beta-carbonic anhydrase {Archaeon Methanobacterium 99.9
>d1ddza2 c.53.2.1 (A:326-564) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Resolvase-like
superfamily: beta-carbonic anhydrase, cab
family: beta-carbonic anhydrase, cab
domain: beta-carbonic anhydrase
species: Red alga (Porphyridium purpureum) [TaxId: 35688]

Probab=99.97  E-value=2.1e-33  Score=236.93  Aligned_cols=123  Identities=27%  Similarity=0.342  Sum_probs=110.2

Q ss_pred             HHhhhccccccccccccchhhhhHHhhcccccCCCCCCcHHHHHHHHHHHHHHhhhhccccchHHHHhhhhcCCCcEEEE
Q 029772           55 PVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVI  134 (188)
Q Consensus        55 ~~~~~~~~~~~~a~~~~~~~~~t~~l~~~~~~~~~~~~~~~~~l~~Ll~gn~~F~~~~~~~~~~~~~~la~gQ~P~~lvI  134 (188)
                      ++++-+.+++..+.  ++++.+|+++......      ...+.+++|+++|++|+...+.++|++|++|+++|+|+++||
T Consensus         5 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~l~~~n~~~~~~~~~~~p~~f~~la~gQ~P~~~vi   76 (239)
T d1ddza2           5 PLVQVTKGGESELD--STMEKLTAELVQQTPG------KLKEGANRVFVNNENWRQKMLKQDPQFFSNLAHTQTPEILWI   76 (239)
T ss_dssp             CCCCSSSSCCCHHH--HHHHHHHHHHHTSCTT------CCCCCSSHHHHHHHHHHHHHHHHCTTHHHHHTTCCCCSEEEE
T ss_pred             CcceecccchhhHH--hhhHhhhhhhhccchh------hHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHhcCCCCCeEEE
Confidence            46777888888888  9999999999775432      233567899999999999998899999999999999999999


Q ss_pred             eccCCCCCcccccCCCCCceeeeeeccccCCCCCCCCcchhHHHHHHHhhcCCC
Q 029772          135 ACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVS  188 (188)
Q Consensus       135 tCsDSRV~pe~Ifg~~pGDlFVvRNaGNiV~~~d~~~~s~~aSLEYAV~~L~V~  188 (188)
                      |||||||+|+.|||++|||+||+||+||+|++.|   .++.++|||||.+|||+
T Consensus        77 ~CsDSRv~pe~if~~~~GdlFVvRNaGN~v~~~d---~~~~~sleyAv~~L~v~  127 (239)
T d1ddza2          77 GCADSRVPANQIINLPAGEVFVHRNIANQCIHSD---MSFLSVLQYAVQYLKVK  127 (239)
T ss_dssp             EETTCSSCHHHHTTCCTTSEEEEEETTCCCCTTC---HHHHHHHHHHHHTSCCS
T ss_pred             eeecCCCCHHHHcCCCCCceEEEeeecCcCCCcc---chhhhhhhhhheecCcc
Confidence            9999999999999999999999999999999865   57899999999999986
>d1ekja_ c.53.2.1 (A:) beta-carbonic anhydrase {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]} Back     information, alignment and structure
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure