Citrus Sinensis ID: 029787

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MLIKITRSTLSKSLNLQLRCFSQAAAAILPDDPSAPLTYLDGLPRPDPRYDETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGME
Secondary Structure (PSIPRED)
ccEEEccccccccHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHcccccEEEEccccccccccEEEEEEEcHHHHHHHHHHccccccEEEEEEEEcccccccccccEEEEEEEcEEccccccccEEEEEEEEccccEEEEEEEEEEEcccccHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHccEEEEEccccccHHHHHHHHHcccccEEEEccccccccccccccEccHHHHHHHHHHHcccccEEEEEEEEEccccccccEEEEEEEEEccccccccccccEEEEEEEEccccEEEEEEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
MLIKITRSTLSKSLNLQLRCFSQAAaailpddpsapltyldglprpdprydetilaipraspgtrvsvkerkagrvpsivfeqedgqhggnkrLISVQTNQIRKLVGHLGRSFFVSRLfdlevrsefgsgdliekVRVLprkvhlhsgtdaplnvtflrappeallkidvplvfrgddvspglrkgme
Flexible Loop (DISEMBL)
mlikitrstlSKSLNLQLRCFSQAAAAILPDDPSAPLTYLDGLPRPDPRYDETIlaipraspgtrvsvkerkagrvpsivfeqedgqhggnkRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVrsefgsgdliekVRVLPRKVhlhsgtdaplnvtFLRAPPEallkidvplvfrgddvspglrkgme
Low Complexity Region (SEG)
MLIKITRSTLSKSLNLQLRCFSQAAAAILPDDPSAPLTYLDGLPRPDPRYDETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGME
Disordered region (IsUnstruct)
*************LNLQLRCFSQAAAAILP******LTYLD************IL*************************************RLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRG************
Disordered Region (DISOPRED)
*******STLSKSLNLQLRCFSQAAAAILPDDPSAPLTYLDGLPRPDPRYDETILAIPRA******SVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG**
Disordered Region (DISEMBL)
MLIKITRSTLSKSLNLQLRCFSQAAAAILPDDPSAPLTYLDGLPRPDPRYDETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGME
Disordered Region (DISPRO)
MLIKITRSTLSKSLNLQLRCFSQAAAAILPDDPSAPLTYLDGLPRPDPRYDETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDV*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLIKITRSTLSKSLNLQLRCFSQAAAAILPDDPSAPLTYLDGLPRPDPRYDETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGME
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
Q2G6G9	204	50S ribosomal protein L25	yes	no	0.531	0.490	0.301	5e-10
B2IG64	221	50S ribosomal protein L25	yes	no	0.622	0.529	0.321	7e-10
B8EK41	227	50S ribosomal protein L25	yes	no	0.617	0.511	0.311	1e-08
Q1GSP2	212	50S ribosomal protein L25	yes	no	0.627	0.556	0.283	1e-08
Q9AAV8	197	50S ribosomal protein L25	yes	no	0.622	0.593	0.311	2e-08
B8GZU9	197	50S ribosomal protein L25	yes	no	0.622	0.593	0.311	2e-08
A5V625	207	50S ribosomal protein L25	yes	no	0.611	0.555	0.305	4e-08
Q2NAN1	229	50S ribosomal protein L25	yes	no	0.627	0.515	0.276	7e-08
Q2VZ23	202	50S ribosomal protein L25	yes	no	0.632	0.589	0.268	1e-07
B8IFN5	211	50S ribosomal protein L25	yes	no	0.606	0.540	0.292	2e-07

>sp|Q2G6G9|RL25_NOVAD 50S ribosomal protein L25 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplY PE=3 SV=1

 Score = 63.9 bits (154), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 16/116 (13%)

Query: 71  RKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSG 130
           R+ GR P++++       GGN+  +++   + + LV  LG   F + + +L V  +    
Sbjct: 24  RREGRTPAVIY-------GGNEEPVAIHLEE-KALVKALGTGHFFNSVVELTVGGQ---- 71

Query: 131 DLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
                VR LP+ V  H  TD P +  FLR   ++++ ++VP++F  ++ SPGL+KG
Sbjct: 72  ----TVRTLPKDVAFHPVTDRPEHADFLRVSKDSVVHVNVPVIFANEEKSPGLKKG 123

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.
Novosphingobium aromaticivorans (strain DSM 12444) (taxid: 279238)

>sp|B2IG64|RL25_BEII9 50S ribosomal protein L25 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplY PE=3 SV=1

 Score = 63.9 bits (154), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 20/137 (14%)

Query: 52  ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLV--GHL 109
           +T+ A  R   G   +   R+ GR+P +++   D         I++   ++ KL+  GH 
Sbjct: 5   KTLAATVRGGTGKGAARSIRREGRIPGVIYGGGDAPEP-----ITLDYRELNKLIYAGH- 58

Query: 110 GRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKID 169
               F++ +FD+EV           K RV+PR   L      PL+V FLR  P A LK+ 
Sbjct: 59  ----FLTTIFDIEVEGA--------KQRVVPRDYQLDPVKGQPLHVDFLRLKPGATLKVS 106

Query: 170 VPLVFRGDDVSPGLRKG 186
           VP+ F   D+ PGL+KG
Sbjct: 107 VPIHFINADICPGLKKG 123

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.

Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) (taxid: 395963)

>sp|B8EK41|RL25_METSB 50S ribosomal protein L25 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplY PE=3 SV=1

 Score = 59.7 bits (143), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 22/138 (15%)

Query: 52  ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGN-KRLISVQTNQIRKLV--GH 108
           +T+ A  R   G   +   R+ GR+P +++       GG+    I++   ++ KL+  GH
Sbjct: 5   KTLAAAARHGTGKGAARSVRREGRIPGVIY------GGGDPAEPITLDYRELNKLIYAGH 58

Query: 109 LGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKI 168
                F++ LF+++V           K RV+PR   L    D PL+V FLR  P A LK+
Sbjct: 59  -----FLTTLFEIDVAGT--------KQRVIPRDYQLDPIKDLPLHVDFLRLKPGASLKV 105

Query: 169 DVPLVFRGDDVSPGLRKG 186
           +VP+ F   +  PG++KG
Sbjct: 106 EVPVHFLNQETCPGVKKG 123

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.

Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) (taxid: 395965)

>sp|Q1GSP2|RL25_SPHAL 50S ribosomal protein L25 OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) GN=rplY PE=3 SV=1

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 16/134 (11%)

Query: 53  TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRS 112
           T+ A  R   G   S + R+ GRVP++V+       GG +  + +   + + L+  L   
Sbjct: 6   TLTAETRERGGKGASRELRRNGRVPAVVY-------GGKEEPLMIHVEE-KLLMKQLMTG 57

Query: 113 FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPL 172
            F++ +  +EV  +        ++R LP+ V  H   D P++  FLR   +A +++ VP+
Sbjct: 58  HFMNSVVMIEVGGK--------QIRTLPKDVAFHPVKDRPIHADFLRIAKDATVQVAVPV 109

Query: 173 VFRGDDVSPGLRKG 186
           VF+ ++ SPGL++G
Sbjct: 110 VFQNEEKSPGLKRG 123

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.

Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) (taxid: 317655)

>sp|Q9AAV8|RL25_CAUCR 50S ribosomal protein L25 OS=Caulobacter crescentus (strain ATCC 19089 / CB15) GN=rplY PE=3 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 21/138 (15%)

Query: 52  ETILAIP-RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKR--LISVQTNQIRKLVGH 108
           E IL +  R   GT  +   R+AG+VP +++       GG K    I+V+ N+ RK    
Sbjct: 3   EIILNVEVRDGAGTGNARATRRAGKVPGVLY-------GGGKAPVNIAVKANEFRK---- 51

Query: 109 LGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKI 168
              S +  +L    V  ++G     EK  V+ + V  H  TD P++    R     L+KI
Sbjct: 52  ---SLYTGKLLGHLVTLQYGE----EKQSVIAKAVQFHPVTDEPVHFDLYRVDEHQLIKI 104

Query: 169 DVPLVFRGDDVSPGLRKG 186
           +VP+ F+  + S GL+KG
Sbjct: 105 EVPVHFKNHETSVGLKKG 122

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.

Caulobacter crescentus (strain ATCC 19089 / CB15) (taxid: 190650)

>sp|B8GZU9|RL25_CAUCN 50S ribosomal protein L25 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rplY PE=3 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 21/138 (15%)

Query: 52  ETILAIP-RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKR--LISVQTNQIRKLVGH 108
           E IL +  R   GT  +   R+AG+VP +++       GG K    I+V+ N+ RK    
Sbjct: 3   EIILNVEVRDGAGTGNARATRRAGKVPGVLY-------GGGKAPVNIAVKANEFRK---- 51

Query: 109 LGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKI 168
              S +  +L    V  ++G     EK  V+ + V  H  TD P++    R     L+KI
Sbjct: 52  ---SLYTGKLLGHLVTLQYGE----EKQSVIAKAVQFHPVTDEPVHFDLYRVDEHQLIKI 104

Query: 169 DVPLVFRGDDVSPGLRKG 186
           +VP+ F+  + S GL+KG
Sbjct: 105 EVPVHFKNHETSVGLKKG 122

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.

Caulobacter crescentus (strain NA1000 / CB15N) (taxid: 565050)

>sp|A5V625|RL25_SPHWW 50S ribosomal protein L25 OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=rplY PE=3 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 16/131 (12%)

Query: 56  AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
           A  R   G   S   R+ GRVP++++ ++          I V+   + KL+ H G  F  
Sbjct: 9   AEARERAGKGASRAIRREGRVPAVIYGEKQ-----EPASIHVEEKVLMKLL-HTGHFFNS 62

Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
             + D+  +          KVR LP+ V  H  TD PL+V FLR      + ++VP+ F+
Sbjct: 63  VVMLDVGGK----------KVRTLPKDVQFHPVTDRPLHVDFLRIGEHTKVNVNVPVHFK 112

Query: 176 GDDVSPGLRKG 186
            +++SPGL++G
Sbjct: 113 DEELSPGLKRG 123

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.

Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) (taxid: 392499)

>sp|Q2NAN1|RL25_ERYLH 50S ribosomal protein L25 OS=Erythrobacter litoralis (strain HTCC2594) GN=rplY PE=3 SV=1

 Score = 57.0 bits (136), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 16/134 (11%)

Query: 53  TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRS 112
           T+ A  R   G   S   R+ GRVP++++       GG +    +   + + L+  L   
Sbjct: 6   TLPAEARERAGKGASRALRREGRVPAVIY-------GGKEEPTMIHVEE-KLLIKQLMTG 57

Query: 113 FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPL 172
            F++ + ++E+  +         VR LP+ V LH  +D P +  F R      +++ VP+
Sbjct: 58  HFMNSIVEIEIGGK--------TVRTLPKDVALHPVSDRPEHADFFRLAKGGKIEVSVPV 109

Query: 173 VFRGDDVSPGLRKG 186
           VF  ++ SPGL+KG
Sbjct: 110 VFMNEEASPGLKKG 123

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.

Erythrobacter litoralis (strain HTCC2594) (taxid: 314225)

>sp|Q2VZ23|RL25_MAGSA 50S ribosomal protein L25 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplY PE=3 SV=1

 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 15/134 (11%)

Query: 53  TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRS 112
            I A  R   G   +   R+AG+VP +++       G  K  I +Q +  R +   + ++
Sbjct: 6   AIAAELRDGSGKGAARATRRAGKVPGVIY-------GDKKAAICIQMDP-RVVWAQISKT 57

Query: 113 FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPL 172
            F ++LF++++  +        K   L R V +H  TD P++V F+R   +  + + VP+
Sbjct: 58  GFFTQLFNVDLGKD-------GKHLCLARDVQMHPVTDQPIHVDFMRVSADHAIHVKVPV 110

Query: 173 VFRGDDVSPGLRKG 186
            F  +  SPG++KG
Sbjct: 111 HFTNELKSPGIKKG 124

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108)

>sp|B8IFN5|RL25_METNO 50S ribosomal protein L25 OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=rplY PE=3 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 16/130 (12%)

Query: 56  AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFV 115
           A+ R   G   +   R+ GRVP++++       G + + IS+  NQ   L+   G   F+
Sbjct: 9   AVARDRVGKGAARAVRRQGRVPAVIYGG-----GQSPQSISLDANQTHHLIYGGG---FL 60

Query: 116 SRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFR 175
           + +F++EV           K+R +PR   L    D PL+V FLR      + ++VP+ F 
Sbjct: 61  TTVFEIEVGGR--------KIRAIPRDYQLDPVKDLPLHVDFLRVTAGQTVAVEVPVHFV 112

Query: 176 GDDVSPGLRK 185
             D +PGL++
Sbjct: 113 NQDAAPGLKQ 122

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.

Methylobacterium nodulans (strain ORS2060 / LMG 21967) (taxid: 460265)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
186701238	257	50S ribosomal protein [Capsella rubella]	0.946	0.692	0.729	3e-68
297799630	257	hypothetical protein ARALYDRAFT_492505 [	0.946	0.692	0.723	2e-67
15236554	264	ribosomal L25/TL5/CTC N-terminal 5S rRNA	0.941	0.670	0.727	2e-67
225426106	258	PREDICTED: 50S ribosomal protein L25 [Vi	0.978	0.713	0.707	3e-67
359476745	258	PREDICTED: 50S ribosomal protein L25-lik	0.978	0.713	0.707	4e-67
334186857	277	ribosomal L25/TL5/CTC N-terminal 5S rRNA	0.941	0.638	0.683	2e-65
356560821	257	PREDICTED: 50S ribosomal protein L25-lik	0.893	0.653	0.739	3e-65
356571771	257	PREDICTED: 50S ribosomal protein L25-lik	0.893	0.653	0.733	5e-65
449437765	260	PREDICTED: 50S ribosomal protein L25-lik	0.829	0.6	0.770	4e-64
356560823	273	PREDICTED: 50S ribosomal protein L25-lik	0.893	0.615	0.681	7e-63

>gi|186701238|gb|ACC91264.1| 50S ribosomal protein [Capsella rubella]

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 132/181 (72%), Positives = 150/181 (82%), Gaps = 3/181 (1%)

Query: 8   STLSKSLNLQLRCFSQAAAAILPDDPS--APLTYLDGLPRPDPRYDETILAIPRASPGTR 65
           +TL K+L   LR FS AA A L  D S    LTYL G PRPDP+Y ETILA+PR+  G  
Sbjct: 7   TTLPKTLQ-NLRLFSPAATAALALDHSLDTQLTYLPGFPRPDPKYAETILAVPRSVSGKS 65

Query: 66  VSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRS 125
           +S KERKAGRVPSI+FEQEDGQHGGNKRL+SVQTNQIRKLV HLG SFF+SRLFD+EVR+
Sbjct: 66  ISAKERKAGRVPSIIFEQEDGQHGGNKRLVSVQTNQIRKLVTHLGYSFFLSRLFDVEVRA 125

Query: 126 EFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRK 185
           E GS ++IEKVR LPR +HLHSGTDAPLNVTF+RAPP ALLK+D+PLVF GDDVSPGL+K
Sbjct: 126 EIGSDEVIEKVRALPRAIHLHSGTDAPLNVTFIRAPPGALLKVDIPLVFIGDDVSPGLKK 185

Query: 186 G 186
           G
Sbjct: 186 G 186

Source: Capsella rubella

Species: Capsella rubella

Genus: Capsella

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799630|ref|XP_002867699.1| hypothetical protein ARALYDRAFT_492505 [Arabidopsis lyrata subsp. lyrata] gi|297313535|gb|EFH43958.1| hypothetical protein ARALYDRAFT_492505 [Arabidopsis lyrata subsp. lyrata]

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 131/181 (72%), Positives = 150/181 (82%), Gaps = 3/181 (1%)

Query: 8   STLSKSLNLQLRCFSQAAAAILPDDPS--APLTYLDGLPRPDPRYDETILAIPRASPGTR 65
           +TL K+L   LR FS AA A L  D +    LTYL G PRPDP++ ETILA+PR+  G  
Sbjct: 7   TTLPKTLQ-NLRLFSPAANAALSLDHTQETQLTYLPGFPRPDPKHAETILAVPRSVSGKS 65

Query: 66  VSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRS 125
           +S KERKAGRVPSI+FEQEDGQHGGNKRLISVQTNQIRKLV HLG SFF+SRLFD+EVR+
Sbjct: 66  ISAKERKAGRVPSIIFEQEDGQHGGNKRLISVQTNQIRKLVNHLGYSFFLSRLFDVEVRA 125

Query: 126 EFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRK 185
           E GS ++IEKVR LPR +HLHSGTDAPLNVTF+RAPP ALLK+D+PLVF GDDVSPGL+K
Sbjct: 126 EIGSDEVIEKVRALPRAIHLHSGTDAPLNVTFIRAPPGALLKVDIPLVFIGDDVSPGLKK 185

Query: 186 G 186
           G
Sbjct: 186 G 186

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15236554|ref|NP_194093.1| ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain-containing protein [Arabidopsis thaliana] gi|4454031|emb|CAA23028.1| putative protein [Arabidopsis thaliana] gi|7269210|emb|CAB79317.1| putative protein [Arabidopsis thaliana] gi|18253005|gb|AAL62429.1| putative protein [Arabidopsis thaliana] gi|21389687|gb|AAM48042.1| putative protein [Arabidopsis thaliana] gi|21594031|gb|AAM65949.1| unknown [Arabidopsis thaliana] gi|332659385|gb|AEE84785.1| ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain-containing protein [Arabidopsis thaliana]

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 131/180 (72%), Positives = 148/180 (82%), Gaps = 3/180 (1%)

Query: 9   TLSKSLNLQLRCFSQAAAAILPDD--PSAPLTYLDGLPRPDPRYDETILAIPRASPGTRV 66
           TL K+L   LR FS AA A L  D      LTYL G PRPDP++ ETILA+PR+  G  +
Sbjct: 8   TLPKTLQ-NLRLFSPAANAALSLDHIQETQLTYLPGFPRPDPKHAETILAVPRSVSGKSI 66

Query: 67  SVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSE 126
           S KERKAGRVPSI+FEQEDGQHGGNKRLISVQTNQIRKLV HLG SFF+SRLFD+EVR+E
Sbjct: 67  SAKERKAGRVPSIIFEQEDGQHGGNKRLISVQTNQIRKLVNHLGYSFFLSRLFDVEVRAE 126

Query: 127 FGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
            GS ++IEKVR LPR +HLHSGTDAPLNVTF+RAPP ALLK+D+PLVF GDDVSPGL+KG
Sbjct: 127 IGSDEVIEKVRALPRAIHLHSGTDAPLNVTFIRAPPGALLKVDIPLVFIGDDVSPGLKKG 186

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426106|ref|XP_002272347.1| PREDICTED: 50S ribosomal protein L25 [Vitis vinifera] gi|297742259|emb|CBI34408.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (663), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 133/188 (70%), Positives = 152/188 (80%), Gaps = 4/188 (2%)

Query: 1   MLIKITRSTLSKSLNLQLRCFSQAAAAILPDDP--SAPLTYLDGLPRPDPRYDETILAIP 58
           MLI   R  L+ +L+L  R FSQ+AAA +  DP    PLTYL+G PRPDP++ E I AIP
Sbjct: 1   MLIHRHRQILTNALHL--RHFSQSAAAAVLQDPLEPPPLTYLEGFPRPDPKFAEIIRAIP 58

Query: 59  RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRL 118
           R   G  +S KERK GRVPSIVFEQEDGQHGGNKRLISV+TNQIRKLV HLGRSFF+SRL
Sbjct: 59  RTISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVKTNQIRKLVNHLGRSFFLSRL 118

Query: 119 FDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDD 178
           FDLEV   F S ++IEKVRVLPRK+HLH+GTDA LNVTF+RAP  ALLK+DVPLVFRG+D
Sbjct: 119 FDLEVGPHFESNEVIEKVRVLPRKLHLHAGTDAVLNVTFIRAPSHALLKVDVPLVFRGED 178

Query: 179 VSPGLRKG 186
           VSPGL+KG
Sbjct: 179 VSPGLKKG 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476745|ref|XP_002276349.2| PREDICTED: 50S ribosomal protein L25-like [Vitis vinifera] gi|297735240|emb|CBI17602.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 133/188 (70%), Positives = 153/188 (81%), Gaps = 4/188 (2%)

Query: 1   MLIKITRSTLSKSLNLQLRCFSQAAAAILPDDP--SAPLTYLDGLPRPDPRYDETILAIP 58
           MLI   R  L+ +L+L  R FSQ+AAA +  DP    PLTYL+G PRPDP++ E I AIP
Sbjct: 1   MLIHRHRQILTNALHL--RHFSQSAAAAVLQDPLEPPPLTYLEGFPRPDPKFAEIIRAIP 58

Query: 59  RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRL 118
           R   G  +S KERK GRVPSIVFEQEDGQHGGNKRLISV+TNQIRKLV HLGRSFF+SRL
Sbjct: 59  RTISGKNISAKERKVGRVPSIVFEQEDGQHGGNKRLISVRTNQIRKLVNHLGRSFFLSRL 118

Query: 119 FDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDD 178
           FDLEV  +F S ++IEKVRVLPRK+HLH+GTDA LNVTF+RAP  ALLK+DVPLVFRG+D
Sbjct: 119 FDLEVGPDFESNEVIEKVRVLPRKLHLHAGTDAVLNVTFIRAPSHALLKVDVPLVFRGED 178

Query: 179 VSPGLRKG 186
           VSPGL+KG
Sbjct: 179 VSPGLKKG 186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186857|ref|NP_001190814.1| ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain-containing protein [Arabidopsis thaliana] gi|332659386|gb|AEE84786.1| ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain-containing protein [Arabidopsis thaliana]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 132/193 (68%), Positives = 149/193 (77%), Gaps = 16/193 (8%)

Query: 9   TLSKSLNLQLRCFSQAAAAILPDD--PSAPLTYLDGLPRPDPRYDETILAIPRASPGTRV 66
           TL K+L   LR FS AA A L  D      LTYL G PRPDP++ ETILA+PR+  G  +
Sbjct: 8   TLPKTLQ-NLRLFSPAANAALSLDHIQETQLTYLPGFPRPDPKHAETILAVPRSVSGKSI 66

Query: 67  SVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSE 126
           S KERKAGRVPSI+FEQEDGQHGGNKRLISVQTNQIRKLV HLG SFF+SRLFD+EVR+E
Sbjct: 67  SAKERKAGRVPSIIFEQEDGQHGGNKRLISVQTNQIRKLVNHLGYSFFLSRLFDVEVRAE 126

Query: 127 FGSGDLIEKVRVLPR-------------KVHLHSGTDAPLNVTFLRAPPEALLKIDVPLV 173
            GS ++IEKVR LPR             K+HLHSGTDAPLNVTF+RAPP ALLK+D+PLV
Sbjct: 127 IGSDEVIEKVRALPRAVKSPFLSLMKLIKIHLHSGTDAPLNVTFIRAPPGALLKVDIPLV 186

Query: 174 FRGDDVSPGLRKG 186
           F GDDVSPGL+KG
Sbjct: 187 FIGDDVSPGLKKG 199

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560821|ref|XP_003548685.1| PREDICTED: 50S ribosomal protein L25-like isoform 1 [Glycine max]

 Score =  253 bits (646), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 125/169 (73%), Positives = 145/169 (85%), Gaps = 1/169 (0%)

Query: 19  RCFSQAAAAILPDDPSAPLTYLDGLPRPDPRYDETILAIPRASPGTRVSVKERKAGRVPS 78
           R FS +AAA+L      PLTYLDG PRPDP++DETILA+PRA  G  +S KER+AGR+PS
Sbjct: 17  RHFSHSAAAVLRPPEPEPLTYLDGFPRPDPKHDETILAVPRADSGKNISAKERRAGRLPS 76

Query: 79  IVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGS-GDLIEKVR 137
           IVFEQEDGQHGGNKRLISV+T+QIRKLV HLGRSFF+SRLF LEVRS F S  D++E VR
Sbjct: 77  IVFEQEDGQHGGNKRLISVRTDQIRKLVNHLGRSFFLSRLFLLEVRSGFDSENDVVETVR 136

Query: 138 VLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
           VLPR +HL +GTDAPLNVTF+RAP +ALLK+DVPLVFRG+DVSPGL+KG
Sbjct: 137 VLPRAIHLKAGTDAPLNVTFIRAPSDALLKVDVPLVFRGEDVSPGLKKG 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571771|ref|XP_003554046.1| PREDICTED: 50S ribosomal protein L25-like [Glycine max]

 Score =  252 bits (644), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 124/169 (73%), Positives = 143/169 (84%), Gaps = 1/169 (0%)

Query: 19  RCFSQAAAAILPDDPSAPLTYLDGLPRPDPRYDETILAIPRASPGTRVSVKERKAGRVPS 78
           R FS +AAA+L      PLTYLDG PRPDP++DETILAIPRA  G  +S KER+AGR+PS
Sbjct: 17  RHFSHSAAAVLRPPGPEPLTYLDGFPRPDPKHDETILAIPRADSGKNISAKERRAGRLPS 76

Query: 79  IVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGS-GDLIEKVR 137
           IVFEQEDGQHGGNKRLISV+T+QIRKLV HLGRSFF+SRLF L+VR+ F S  D +E VR
Sbjct: 77  IVFEQEDGQHGGNKRLISVRTDQIRKLVNHLGRSFFLSRLFHLQVRAHFDSEDDFVETVR 136

Query: 138 VLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
           VLPR +HL +GTDAPLNVTF+RAP  ALLK+DVPLVFRG+DVSPGL+KG
Sbjct: 137 VLPRAIHLKAGTDAPLNVTFIRAPSNALLKVDVPLVFRGEDVSPGLKKG 185

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437765|ref|XP_004136661.1| PREDICTED: 50S ribosomal protein L25-like [Cucumis sativus] gi|449494761|ref|XP_004159639.1| PREDICTED: 50S ribosomal protein L25-like [Cucumis sativus]

 Score =  249 bits (636), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 121/157 (77%), Positives = 139/157 (88%), Gaps = 1/157 (0%)

Query: 31  DDPSAPL-TYLDGLPRPDPRYDETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHG 89
           D  S PL +YL+G P+PDP+Y ETILAIPR+  G  +S KERKAGRVPSIVFEQEDGQHG
Sbjct: 31  DSVSEPLFSYLEGFPKPDPKYAETILAIPRSISGKSISAKERKAGRVPSIVFEQEDGQHG 90

Query: 90  GNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGT 149
           GNKRLISV+TNQI KLV +LGRSFF+SRLFDLEV S+F SGD++EKVRVLPRK+HLH+GT
Sbjct: 91  GNKRLISVRTNQIVKLVKNLGRSFFLSRLFDLEVLSDFESGDIVEKVRVLPRKIHLHAGT 150

Query: 150 DAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKG 186
           DAPLNVTF+RAP  A+LK+DVPLVFRG+DV PGLRKG
Sbjct: 151 DAPLNVTFIRAPSHAVLKVDVPLVFRGEDVCPGLRKG 187

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560823|ref|XP_003548686.1| PREDICTED: 50S ribosomal protein L25-like isoform 2 [Glycine max]

 Score =  245 bits (625), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 126/185 (68%), Positives = 146/185 (78%), Gaps = 17/185 (9%)

Query: 19  RCFSQAAAAILPDDPSAPLTYLDGLPRPDPRYDETILAIPRASPGTRVSVKERKAGRVPS 78
           R FS +AAA+L      PLTYLDG PRPDP++DETILA+PRA  G  +S KER+AGR+PS
Sbjct: 17  RHFSHSAAAVLRPPEPEPLTYLDGFPRPDPKHDETILAVPRADSGKNISAKERRAGRLPS 76

Query: 79  IVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGS-GDLIEKVR 137
           IVFEQEDGQHGGNKRLISV+T+QIRKLV HLGRSFF+SRLF LEVRS F S  D++E VR
Sbjct: 77  IVFEQEDGQHGGNKRLISVRTDQIRKLVNHLGRSFFLSRLFLLEVRSGFDSENDVVETVR 136

Query: 138 VLPR----------------KVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSP 181
           VLPR                K+HL +GTDAPLNVTF+RAP +ALLK+DVPLVFRG+DVSP
Sbjct: 137 VLPRAVRSLSLSLSLSLSLIKIHLKAGTDAPLNVTFIRAPSDALLKVDVPLVFRGEDVSP 196

Query: 182 GLRKG 186
           GL+KG
Sbjct: 197 GLKKG 201

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
TAIR|locus:2174979	249	AT5G66860 [Arabidopsis thalian	0.718	0.542	0.418	1.3e-22
TIGR_CMR|SPO_0812	207	SPO_0812 "ribosomal protein L2	0.622	0.565	0.305	0.00011

TAIR|locus:2174979 AT5G66860 [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 59/141 (41%), Positives = 83/141 (58%)

Query:    52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQE----DGQHGG--NKRLISVQTNQIRKL 105
             +TI AIPR + G  VS ++R  GR+P++VF Q     D    G   K+L++    QI+ +
Sbjct:    34 QTIQAIPREATGRGVSARDRTIGRIPAVVFPQSLLDTDASKRGVSRKQLLTADKKQIKSI 93

Query:   106 VGHLGRSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEAL 165
             +  +G  FF S  F L++R+  GS  L+E  RVLP KVH    T   LN+ F+ A     
Sbjct:    94 IDSVGLPFFCSTTFQLQIRAGQGSSTLVESGRVLPLKVHRDEETGKILNLVFVWADDGEK 153

Query:   166 LKIDVPLVFRGDDVSPGLRKG 186
             LK+DVP+VF+G D  PGL+KG
Sbjct:   154 LKVDVPVVFKGLDHCPGLQKG 174

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

TIGR_CMR|SPO_0812 SPO_0812 "ribosomal protein L25" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 110 (43.8 bits), Expect = 0.00011, P = 0.00011
 Identities = 41/134 (30%), Positives = 66/134 (49%)

Query:    54 ILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRL-ISVQTNQIRKLVGHLGRS 112
             ++A+ R   G   + + R+ G VP IVF    G  G N+ L I +  N++ K++   GR 
Sbjct:     8 LVALERTGTGKGAARQARRDGMVPGIVF----G--GDNEPLPIQIPFNRLLKML-KAGR- 59

Query:   113 FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPL 172
              F S LF+L+V          E VRV+ R V      D P ++  +R    + +K+ + +
Sbjct:    60 -FKSTLFNLKVEGH-------EDVRVICRDVQRDVVKDLPTHLDLMRLRRTSRIKLFIHV 111

Query:   173 VFRGDDVSPGLRKG 186
              F     +PGL+KG
Sbjct:   112 DFVNHAAAPGLKKG 125


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.139   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      188       188   0.00087  110 3  11 22  0.44    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  546 (58 KB)
  Total size of DFA:  128 KB (2082 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.96u 0.08s 18.04t   Elapsed:  00:00:01
  Total cpu time:  17.96u 0.08s 18.04t   Elapsed:  00:00:01
  Start:  Tue May 21 00:21:51 2013   End:  Tue May 21 00:21:52 2013

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

GO:0008097 "5S rRNA binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.7__1938__AT4G23620.1	annotation not avaliable (257 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.1__3380__AT1G32380.1	annotation not avaliable (400 aa)	•						•		0.621
	Al_scaffold_0004_2035	annotation not avaliable (403 aa)	•						•		0.611
	fgenesh1_pm.C_scaffold_6001598	annotation not avaliable (218 aa)	•								0.605
	scaffold_403379.1	annotation not avaliable (394 aa)	•						•		0.598
	fgenesh2_kg.1__2016__AT1G18440.1	annotation not avaliable (281 aa)	•								0.575
	fgenesh2_kg.6__1598__AT5G16140.1	annotation not avaliable (239 aa)	•								0.557
	fgenesh2_kg.1__4626__AT1G56050.1	annotation not avaliable (421 aa)	•								0.540
	Al_scaffold_0007_3927	annotation not avaliable (241 aa)	•								0.518
	fgenesh2_kg.5__880__AT3G44890.1	annotation not avaliable (197 aa)	•				•		•		0.428
	scaffold_103404.1	annotation not avaliable (394 aa)	•								0.408

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	188
PRK05618	197	PRK05618, PRK05618, 50S ribosomal protein L25/gene	5e-15
cd00495	90	cd00495, Ribosomal_L25_TL5_CTC, Ribosomal L25/TL5/	1e-11
COG1825	93	COG1825, RplY, Ribosomal protein L25 (general stre	8e-05
pfam01386	87	pfam01386, Ribosomal_L25p, Ribosomal L25p family	1e-04

>gnl|CDD|235534 PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed

 Score = 69.5 bits (171), Expect = 5e-15
 Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 20/136 (14%)

Query: 53  TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNK--RLISVQTNQIRKLVGHLG 110
           T+ A  R   G   + + R+AG+VP++++       G  K    ISV   ++ K    L 
Sbjct: 5   TLEAEVREEFGKGAARRLRRAGKVPAVIY-------GKGKEPVSISVDEKELIKA---LK 54

Query: 111 RSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDV 170
           +  F+S L DLEV  +        K +VL + V  H   D  L+V FLR      +K++V
Sbjct: 55  KGAFLSTLLDLEVGGK--------KQKVLVKDVQRHPVKDFILHVDFLRVDAGEKVKVEV 106

Query: 171 PLVFRGDDVSPGLRKG 186
           P+ F G+    G++ G
Sbjct: 107 PVHFVGEAKGVGVKLG 122

Length = 197

>gnl|CDD|198379 cd00495, Ribosomal_L25_TL5_CTC, Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain

 Score = 57.9 bits (141), Expect = 1e-11
 Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 17/107 (15%)

Query: 53  TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRS 112
           T+ A  R   G   + + R+ G+VP++++       G     ISV   ++ KL+   G  
Sbjct: 1   TLKAEKREETGKGAARRLRREGKVPAVIY-----GKGEEPIPISVDAKELEKLLRKEGE- 54

Query: 113 FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLR 159
              + + +LE+          +K  VL + V  H   D  L+V FLR
Sbjct: 55  ---NTVIELEIDG--------KKENVLIKDVQRHPVKDEILHVDFLR 90

L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC. CTC is a known stress protein, and proteins of this family are believed to have two functions, acting as both ribosomal and stress proteins. In Escherichia coli, cells deleted for L25 were found to be viable; however, these cells grew slowly and had impaired protein synthesis capability. In Bacillus subtilis, CTC is induced under stress conditions and located in the ribosome; it has been proposed that CTC may be necessary for accurate translation under stress conditions. Ribosomal_L25_TL5_CTC is mostly found in bacteria, with a few exceptions such as plants or stramenopiles. Due to its limited taxonomic diversity and the viability of cells deleted for L25, this protein is not believed to be necessary for ribosomal assembly. Eukaryotes contain a protein called L25, which is not homologous to bacterial L25, but rather to bacterial L23. Length = 90

>gnl|CDD|224738 COG1825, RplY, Ribosomal protein L25 (general stress protein Ctc) [Translation, ribosomal structure and biogenesis]

 Score = 39.5 bits (93), Expect = 8e-05
 Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 21/103 (20%)

Query: 59  RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQ--TNQIRKLVGHLGRSFFVS 116
           R S G   S + R+AG++P++V+       GG K  +++    ++  K +  LG S    
Sbjct: 9   RTSQGKGASRRLRRAGKIPAVVY-------GGGKEPVNIALDHHEFAKALRKLGYST--- 58

Query: 117 RLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLR 159
            +  LEV          ++++VL + V  H  TD   ++ FLR
Sbjct: 59  -VITLEVDG--------KEIKVLVKDVQRHPLTDEVQHIDFLR 92

Length = 93

>gnl|CDD|216471 pfam01386, Ribosomal_L25p, Ribosomal L25p family

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 21/104 (20%)

Query: 56  AIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQ--TNQIRKLVGHLGRSF 113
           A  R   G   S + R+ G+VP++++       G  K  +S+     ++ KL+    R  
Sbjct: 3   AEKREETGKGASRRLRREGKVPAVIY-------GKGKEPVSISVDEKELEKLL----REA 51

Query: 114 FVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTF 157
             + + +L++          +K  VL + V  H   D  L+V F
Sbjct: 52  GENTVIELKIDG--------KKENVLIKDVQRHPVKDKILHVDF 87

Ribosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis, which is induced by stress. Length = 87

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
TIGR00731	176	ctc_TL5 ribosomal protein L25, Ctc-form. The C-ter	100.0
PRK05618	197	50S ribosomal protein L25/general stress protein C	100.0
PRK05943	94	50S ribosomal protein L25; Reviewed	99.97
PF01386	88	Ribosomal_L25p: Ribosomal L25p family; InterPro: I	99.96
cd00495	91	Ribosomal_L25_TL5_CTC Ribosomal_L25_TL5_CTC: Ribos	99.96
COG1825	93	RplY Ribosomal protein L25 (general stress protein	99.92

>TIGR00731 ctc_TL5 ribosomal protein L25, Ctc-form

Probab=100.00  E-value=1.2e-35  Score=244.36  Aligned_cols=116  Identities=23%  Similarity=0.420  Sum_probs=108.8

Q ss_pred             EEEEEcCCCCChHhHHHHHCCCCcEEEecCCCCCCCCceeeEEEeHHHHHHHHhhhCCCcceeEEEEEEECCccCCCCCc
Q 029787           54 ILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLI  133 (188)
Q Consensus        54 L~a~~R~~~Gk~~arrLRr~G~VPgVvYG~~~~~~g~~~~~I~v~~~el~kllk~~~~~~~~s~v~~L~v~g~~~~g~~~  133 (188)
                      |+|++|+..||+++|||||+|+|||||||+     +.++++|++++++|.+++++    .+.+++|+|+++|+       
T Consensus         1 l~a~~R~~~gk~~~r~LR~~G~VPaVvYG~-----~~~~~~i~v~~~el~k~l~~----~~~~~~i~L~v~g~-------   64 (176)
T TIGR00731         1 LEVKSRTSFGKSAARRIRKEGRIPAVVYGK-----GKENVNLELKSKEFIKYLRK----GATSTVLTLEIGGK-------   64 (176)
T ss_pred             CeEEEeCCCCChHHHHHHHCCCccEEEECC-----CCCCEEEEECHHHHHHHHhc----cCCcEEEEEEECCE-------
Confidence            579999999999999999999999999998     67899999999999999974    23689999999985       


Q ss_pred             ceEeEEEeeeeccCCCCCceeEEeEEeCCCCeEEEEEeEEEEecCCCccccCCCC
Q 029787          134 EKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGME  188 (188)
Q Consensus       134 e~~~vliKeVQ~hpvt~~ilHVDF~~v~~~~~V~v~VPV~f~Ged~s~GvK~GG~  188 (188)
                       +++|++||||+||++++++||||++++++++|+++|||+|+|+  ++|+|+||+
T Consensus        65 -~~~vlikevQ~~pv~~~i~HvDF~~v~~~~~v~v~VPv~~~G~--~~gvk~GG~  116 (176)
T TIGR00731        65 -EFKVLVKDYQYNPVTNEVIHVDFLEVVEGVKLKVEVPIKLIGT--PIGVKNGGI  116 (176)
T ss_pred             -EEEEEEehhhhccCCCCeEEEEeEEeCCCCEEEEEeeEEEecc--cccccCCcE
Confidence             7899999999999999999999999999999999999999999  679999995

The C-terminal domain of sll1824, an apparent L25 of Synechocystis PCC6803, matches the N-terminal domain of this family. Examples of L25 and Ctc are not separated by a UPGMA tree built on the region of shared homology.

>PRK05618 50S ribosomal protein L25/general stress protein Ctc; Reviewed

Probab=100.00  E-value=2.5e-34  Score=239.97  Aligned_cols=122  Identities=32%  Similarity=0.489  Sum_probs=111.9

Q ss_pred             ceEEEEEEcCCCCChHhHHHHHCCCCcEEEecCCCCCCCCceeeEEEeHHHHHHHHhhhCCCcceeEEEEEEECCccCCC
Q 029787           51 DETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSG  130 (188)
Q Consensus        51 ~~~L~a~~R~~~Gk~~arrLRr~G~VPgVvYG~~~~~~g~~~~~I~v~~~el~kllk~~~~~~~~s~v~~L~v~g~~~~g  130 (188)
                      ..+|+|++|+..||+++||||++|+|||||||+     +.++++|+++.++|.+++++   ..+.+.+|+|+++|+    
T Consensus         3 ~~~l~a~~R~~~gk~~~r~lR~~G~VPaViYG~-----~~~~~~i~v~~~~l~k~l~~---~~~~~~~i~L~i~g~----   70 (197)
T PRK05618          3 TITLEAEVREEFGKGAARRLRRAGKVPAVIYGK-----GKEPVSISVDEKELIKALKK---GAFLSTLLDLEVGGK----   70 (197)
T ss_pred             eEEEEEEEcCcCCChHHHHHHHCCCCcEEEECC-----CCCCEEEEECHHHHHHHHhc---CCceeEEEEEEECCE----
Confidence            478999999999999999999999999999998     57899999999999999964   446789999999764    


Q ss_pred             CCcceEeEEEeeeeccCCCCCceeEEeEEeCCCCeEEEEEeEEEEecCCCccccCCCC
Q 029787          131 DLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGME  188 (188)
Q Consensus       131 ~~~e~~~vliKeVQ~hpvt~~ilHVDF~~v~~~~~V~v~VPV~f~Ged~s~GvK~GG~  188 (188)
                          +++|++|+||+||++++++||||++++++++|+++|||+|+|++.+++.|+||+
T Consensus        71 ----~~~vlikevQ~~pv~~~i~HvDF~~v~~~~~v~v~VPv~~~G~~~~~~~k~GG~  124 (197)
T PRK05618         71 ----KQKVLVKDVQRHPVKDFILHVDFLRVDAGEKVKVEVPVHFVGEAKGVGVKLGGV  124 (197)
T ss_pred             ----EEEEEEeeeeeccCCCCEEeEEEEEeCCCCEEEEEeeEEEEcCCCCcccccceE
Confidence                889999999999999999999999999999999999999999977666666984

>PRK05943 50S ribosomal protein L25; Reviewed

Probab=99.97  E-value=5e-30  Score=191.62  Aligned_cols=93  Identities=24%  Similarity=0.331  Sum_probs=85.8

Q ss_pred             eEEEEEEcCCCCChHhHHHHHCCCCcEEEecCCCCCCCCceeeEEEeHHHHHHHHhhhCCCcceeEEEEEEECCccCCCC
Q 029787           52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGD  131 (188)
Q Consensus        52 ~~L~a~~R~~~Gk~~arrLRr~G~VPgVvYG~~~~~~g~~~~~I~v~~~el~kllk~~~~~~~~s~v~~L~v~g~~~~g~  131 (188)
                      .+|+|++|+..||+++|+||++|+|||||||+     |.++++|++++++|.+++++   .++.+++|+|+++|+     
T Consensus         2 ~~l~a~~R~~~gk~~~r~lR~~G~vPaViYG~-----~~~~~~i~v~~~el~k~l~~---~~~~~~~i~L~v~g~-----   68 (94)
T PRK05943          2 FTINAEVRPEQGKGASRRLRRAGKFPAIIYGG-----NEAPVSIVLDHKDVINLQAK---AEFYKEVITLVIDGK-----   68 (94)
T ss_pred             eEEEEEEeCcCCChHHHHHHHCCCCCEEEECC-----CCCcEEEEEcHHHHHHHHhc---CCCcceEEEEEECCE-----
Confidence            57999999999999999999999999999998     67899999999999999974   334678999999985     


Q ss_pred             CcceEeEEEeeeeccCCCCCceeEEeEEe
Q 029787          132 LIEKVRVLPRKVHLHSGTDAPLNVTFLRA  160 (188)
Q Consensus       132 ~~e~~~vliKeVQ~hpvt~~ilHVDF~~v  160 (188)
                         ++.|++||||+||++++++||||++|
T Consensus        69 ---~~~v~ikevQ~~pv~~~i~HvDF~~v   94 (94)
T PRK05943         69 ---EVKVKVQAVQRHPFKPKLEHIDFVRA   94 (94)
T ss_pred             ---EEEEEEeeeecCcCCCCeEeEeeeeC
Confidence               78999999999999999999999985

>PF01386 Ribosomal_L25p: Ribosomal L25p family; InterPro: IPR020055 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.96  E-value=7.8e-29  Score=183.04  Aligned_cols=88  Identities=25%  Similarity=0.443  Sum_probs=82.2

Q ss_pred             EEEEEcCCCCChHhHHHHHCCCCcEEEecCCCCCCCCceeeEEEeHHHHHHHHhhhCCCcceeEEEEEEECCccCCCCCc
Q 029787           54 ILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDLI  133 (188)
Q Consensus        54 L~a~~R~~~Gk~~arrLRr~G~VPgVvYG~~~~~~g~~~~~I~v~~~el~kllk~~~~~~~~s~v~~L~v~g~~~~g~~~  133 (188)
                      |+|++|+.+||+++++||++|+|||||||+     +.++++|+|++++|.+++++   ..+.+++|+|+++|+       
T Consensus         1 L~a~~R~~~gk~~~r~LR~~G~iPaviYG~-----~~~~~~i~v~~~~l~k~~~~---~~~~~~~i~L~i~g~-------   65 (88)
T PF01386_consen    1 LKAEKREETGKSAARRLRREGKIPAVIYGK-----GKESIPISVDEKELEKLLRR---KHGENSVIELNIDGK-------   65 (88)
T ss_dssp             EEEEESSSTSSSHHHHHHHTTEEEEEEEES-----SEEEEEEEEEHHHHHHHHTH---HHTTTSEEEEEETTE-------
T ss_pred             CeEEEcCcCCCHHHHHHHHcCCceEEEECC-----CCCCEEEEEeHHHHHHHHHh---cCCceEEEEEEECCE-------
Confidence            789999999999999999999999999998     67899999999999999942   356789999999995       


Q ss_pred             ceEeEEEeeeeccCCCCCceeEEe
Q 029787          134 EKVRVLPRKVHLHSGTDAPLNVTF  157 (188)
Q Consensus       134 e~~~vliKeVQ~hpvt~~ilHVDF  157 (188)
                       ++.|++||||+||++++++||||
T Consensus        66 -~~~vlikevQ~~p~~~~i~HvDF   88 (88)
T PF01386_consen   66 -KYNVLIKEVQRDPVTDKILHVDF   88 (88)
T ss_dssp             -EEEEEEEEEEEESSSSSEEEEEE
T ss_pred             -EEEEEEEeeeeCCCCCCeEeccC
Confidence             99999999999999999999999

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry models the short-form of the ribosomal L25 protein. The long-form has homology to the general stress protein Ctc of Bacillus subtilis, a mesophile, and ribosomal protein TL5 of Thermus thermophilus, a thermophile. Ribosomal protein L25 of Escherichia coli and Haemophilus influenzae appear to be orthologous but consist only of the N-terminal half of Ctc and TL5. Both short (L25-like) and full-length (CTC-like) members of this family bind the E-loop of bacterial 5S rRNA.; GO: 0003735 structural constituent of ribosome, 0008097 5S rRNA binding, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2HGQ_Y 2HGJ_Y 2Y19_Z 2WRL_Z 3KIT_Z 2WH2_Z 2WDN_Z 3V25_Z 3HUZ_Z 3KIY_Z ....

>cd00495 Ribosomal_L25_TL5_CTC Ribosomal_L25_TL5_CTC: Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain

Probab=99.96  E-value=2.5e-28  Score=180.74  Aligned_cols=90  Identities=33%  Similarity=0.488  Sum_probs=83.9

Q ss_pred             EEEEEEcCCCCChHhHHHHHCCCCcEEEecCCCCCCCCceeeEEEeHHHHHHHHhhhCCCcceeEEEEEEECCccCCCCC
Q 029787           53 TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDL  132 (188)
Q Consensus        53 ~L~a~~R~~~Gk~~arrLRr~G~VPgVvYG~~~~~~g~~~~~I~v~~~el~kllk~~~~~~~~s~v~~L~v~g~~~~g~~  132 (188)
                      +|+|++|+.+||+++|+||++|+|||||||+     +.++++|+++.++|.+++++    .+.+++|+|+++|+      
T Consensus         2 ~l~a~~R~~~gk~~~r~lR~~G~iPavvYG~-----~~~~~~i~v~~~~l~k~l~~----~~~~~~~~L~i~g~------   66 (91)
T cd00495           2 TLKAEKREETGKGASRRLRRAGKVPAVIYGK-----GKEPISISVDEKELEKLLRK----EGRSTLIELNIDGK------   66 (91)
T ss_pred             eEEEEEcccCCChHHHHHHHCCCCCEEEECC-----CCCCEEEEEcHHHHHHHHhh----cCCceEEEEEECCE------
Confidence            6899999999999999999999999999998     67899999999999999985    33689999999975      


Q ss_pred             cceEeEEEeeeeccCCCCCceeEEeEE
Q 029787          133 IEKVRVLPRKVHLHSGTDAPLNVTFLR  159 (188)
Q Consensus       133 ~e~~~vliKeVQ~hpvt~~ilHVDF~~  159 (188)
                        ++.|++||||+||++++++||||++
T Consensus        67 --~~~~~ikevQ~~pv~~~i~HvDF~~   91 (91)
T cd00495          67 --KENVLIKDVQRHPVKDKILHVDFLR   91 (91)
T ss_pred             --EEEEEEehhhhccCCCCEEEEeccC
Confidence              8899999999999999999999984

L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC, which each contain two domains. CTC is a known stress protein, and proteins of this family are believed to have two functions, acting as both ribosomal and stress proteins. In Escherichia coli, cells deleted for L25 were found to be viable; however, these cells grew slowly and had impaired protein synthesis capability. In Bacillus subtilis, CTC is induced under stress conditions and located in the ribosome; it has been proposed that CTC may be necessary for accurate translation under stress conditions. Ribosomal_L25_TL5_CTC is found only in bacteria and some plastids. Due to its limited taxonomic diversity and the viability of cells deleted for L25, this protein is not believed to be necessary for ribosomal assembly. Eukaryotes contain a protein called L25, which is not homologous to bacterial L

>COG1825 RplY Ribosomal protein L25 (general stress protein Ctc) [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=2.6e-25  Score=166.79  Aligned_cols=92  Identities=28%  Similarity=0.450  Sum_probs=86.5

Q ss_pred             eEEEEEEcCCCCChHhHHHHHCCCCcEEEecCCCCCCCCceeeEEEeHHHHHHHHhhhCCCcceeEEEEEEECCccCCCC
Q 029787           52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGD  131 (188)
Q Consensus        52 ~~L~a~~R~~~Gk~~arrLRr~G~VPgVvYG~~~~~~g~~~~~I~v~~~el~kllk~~~~~~~~s~v~~L~v~g~~~~g~  131 (188)
                      .+|+|+.|++.||+++|+||++|+||||+||.     |.++++|.++.+++.|.+++    .+.|++|+|+|+|+     
T Consensus         2 ~~l~~~~R~~~Gkg~~RrlR~~G~iPAviYG~-----g~~~v~i~l~~~~~~k~~~~----~~~~~v~~l~v~g~-----   67 (93)
T COG1825           2 RELEAEVRTSQGKGASRRLRRAGKIPAVVYGG-----GKEPVNIALDHHEFAKALRK----LGYSTVITLEVDGK-----   67 (93)
T ss_pred             ceeceeEecccCcchhHhHHhcCCCCEEEECC-----CCCCceEEEcHHHHHHHHhh----cccceEEEEEECCe-----
Confidence            57999999999999999999999999999998     68899999999999999986    23789999999996     


Q ss_pred             CcceEeEEEeeeeccCCCCCceeEEeEEe
Q 029787          132 LIEKVRVLPRKVHLHSGTDAPLNVTFLRA  160 (188)
Q Consensus       132 ~~e~~~vliKeVQ~hpvt~~ilHVDF~~v  160 (188)
                         +..|++|++|+||+++.++|+||+++
T Consensus        68 ---~~~Vlvkd~Q~~p~~~~~~HvDf~~v   93 (93)
T COG1825          68 ---EIKVLVKDVQRHPLTDEVQHIDFLRV   93 (93)
T ss_pred             ---EEEEEehhhhhCcccCceeecccccC
Confidence               99999999999999999999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	188
2zjr_S	237	50S ribosomal protein L25; ribosome, large ribosom	1e-11
1feu_A	206	50S ribosomal protein L25; general stress protein	3e-10
1b75_A	94	Protein (50S ribosomal protein L25); RNA-binding p	2e-09

>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T* 1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S* 3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z 1pnu_T 1pny_T 1vor_W ... Length = 237

 Score = 60.5 bits (147), Expect = 1e-11
 Identities = 20/128 (15%), Positives = 44/128 (34%), Gaps = 19/128 (14%)

Query: 59  RASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRL 118
             +   R   ++     + ++ + +E+          ++      +      R    + L
Sbjct: 2   ELTAKPRTPKQKLDESMIAAVAYNKENNVS------FALDRKAFDRAF----RQQSTTGL 51

Query: 119 FDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDD 178
           FD+ V       +  E    L + V +     AP++V F        +++ VP+   G  
Sbjct: 52  FDITV-------EGGETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGR- 103

Query: 179 VSPGLRKG 186
            S G  +G
Sbjct: 104 -SQGEVQG 110

>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S rRNA-protein complex, cadmium IONS, ribosome; 2.30A {Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T 2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z 2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z 2wrl_Z 2wro_Z ... Length = 206

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 23/134 (17%)

Query: 53  TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRS 112
            + A  R           R+AG++P +++      +    R + V   +  K+       
Sbjct: 4   RLKAYYREGEKPS---ALRRAGKLPGLMY------NRHLNRKVYVDLVEFDKVFRQAS-- 52

Query: 113 FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPL 172
                +       +         +  L R+V+L      P +V F     E  +++ VPL
Sbjct: 53  -IHHVIVLELPDGQ--------SLPTLVRQVNLDKRRRRPEHVDFFVLSDEP-VEMYVPL 102

Query: 173 VFRGDDVSPGLRKG 186
            F G     G+R G
Sbjct: 103 RFVGT--PAGVRAG 114

>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ... Length = 94

 Score = 51.8 bits (125), Expect = 2e-09
 Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 20/110 (18%)

Query: 53  TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNK--RLISVQTNQIRKLVGHLG 110
           TI A  R   G   S + R A + P+I++       GG +    I +  +++  +     
Sbjct: 3   TINAEVRKEQGKGASRRLRAANKFPAIIY-------GGKEAPLAIELDHDKVMNMQAKAE 55

Query: 111 RSFFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRA 160
              F S +  + V      G   ++++V  + V  H       ++ F+RA
Sbjct: 56  ---FYSEVLTIVV-----DG---KEIKVKAQDVQRHPYKPKLQHIDFVRA 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
1feu_A	206	50S ribosomal protein L25; general stress protein	100.0
2zjr_S	237	50S ribosomal protein L25; ribosome, large ribosom	99.97
1b75_A	94	Protein (50S ribosomal protein L25); RNA-binding p	99.96

>1feu_A 50S ribosomal protein L25; general stress protein CTC, 5S rRNA-protein complex, cadmium IONS, ribosome; 2.30A {Thermus thermophilus} SCOP: b.53.1.1 PDB: 2j01_Z 1vsp_T 2hgj_Y 2hgq_Y 2hgu_Y 1vsa_T 2j03_Z 2jl6_Z 2jl8_Z 2v47_Z 2v49_Z 2wdi_Z 2wdj_Z 2wdl_Z 2wdn_Z 2wh2_Z 2wh4_Z 2wrj_Z 2wrl_Z 2wro_Z ...

Probab=100.00  E-value=2.6e-33  Score=234.39  Aligned_cols=114  Identities=24%  Similarity=0.379  Sum_probs=105.4

Q ss_pred             ceEEEEEEcCCCCChHhHHHHHCCCCcEEEecCCCCCCCCceeeEEEeHHHHHHHHhhhCCCcceeEEEEEEE-CCccCC
Q 029787           51 DETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEV-RSEFGS  129 (188)
Q Consensus        51 ~~~L~a~~R~~~Gk~~arrLRr~G~VPgVvYG~~~~~~g~~~~~I~v~~~el~kllk~~~~~~~~s~v~~L~v-~g~~~~  129 (188)
                      ..+|+|+.|+   |+++|||||+|+|||||||+     |.+ ++|+++.++|.+++++    .+.|++|+|++ +|+   
T Consensus         2 ~~~l~a~~R~---k~aarrLRr~G~VPaVvYG~-----~~e-~~i~v~~~el~~~l~~----~~~~~vi~L~i~~G~---   65 (206)
T 1feu_A            2 EYRLKAYYRE---GEKPSALRRAGKLPGLMYNR-----HLN-RKVYVDLVEFDKVFRQ----ASIHHVIVLELPDGQ---   65 (206)
T ss_dssp             EEEEECEECS---SSCHHHHHHTTEEEEEEECS-----SCE-EEEEEEHHHHHHHHHH----HTTTSEEEEECTTSC---
T ss_pred             ceEEEEEEeC---ChHHHHHHHCCCceEEEEcC-----Cce-EEEEEcHHHHHHHHhh----cCCcEEEEEEEcCCC---
Confidence            3789999999   88899999999999999998     567 9999999999999985    23478999999 875   


Q ss_pred             CCCcceEeEEEeeeeccCCCCCceeEEeEEeCCCCeEEEEEeEEEEecCCCccccCCCC
Q 029787          130 GDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGME  188 (188)
Q Consensus       130 g~~~e~~~vliKeVQ~hpvt~~ilHVDF~~v~~~~~V~v~VPV~f~Ged~s~GvK~GG~  188 (188)
                           +++|++|+||+||++++++||||+++++ ++|+++|||+|+|+  |+|+|+||+
T Consensus        66 -----~~~vlikdvQ~hpv~~~i~HvDF~~v~~-~~v~v~VPv~~~G~--~~gvk~GG~  116 (206)
T 1feu_A           66 -----SLPTLVRQVNLDKRRRRPEHVDFFVLSD-EPVEMYVPLRFVGT--PAGVRAGGV  116 (206)
T ss_dssp             -----EEEEEEEEEEECSSSSCEEEEEEEECCS-SCEEEEEEEEEESC--CHHHHTTCE
T ss_pred             -----EEEEEEEEeEeCCCCCCeEEEEEEEECC-EEEEEEeeEEEEcC--cccccCceE
Confidence                 8899999999999999999999999999 99999999999999  789999984

>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T* 1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S* 3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z 1pnu_T 1pny_T 1vor_W ...

Probab=99.97  E-value=7.1e-32  Score=230.16  Aligned_cols=110  Identities=17%  Similarity=0.276  Sum_probs=102.3

Q ss_pred             EcCCCCChHhHHHHHCCCCcEEEecCCCCCCCCceeeEEEeHHHHHHHHhhhCCCcceeEEEEEEECC-ccCCCCCcceE
Q 029787           58 PRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRS-EFGSGDLIEKV  136 (188)
Q Consensus        58 ~R~~~Gk~~arrLRr~G~VPgVvYG~~~~~~g~~~~~I~v~~~el~kllk~~~~~~~~s~v~~L~v~g-~~~~g~~~e~~  136 (188)
                      +|+..||+++||| |+|+||||||| +     .++++|+++.++|.+++++    .+.+++|+|+|+| +        ++
T Consensus         2 ~R~~~GKgaaRrL-r~G~VPaVvYG-g-----~e~v~i~v~~~el~k~l~~----~~~~~li~L~IdG~~--------~~   62 (237)
T 2zjr_S            2 ELTAKPRTPKQKL-DESMIAAVAYN-K-----ENNVSFALDRKAFDRAFRQ----QSTTGLFDITVEGGE--------TF   62 (237)
T ss_dssp             CCCBCCSCCHHHH-SSSCCCEEEES-S-----SCCCCCBCCHHHHHHHHHH----HTTSCCCBCCCTTCC--------CC
T ss_pred             cccccCcHHHHHH-hCCCCCEEEeC-C-----CCCEEEEECHHHHHHHHHh----cCCcEEEEEEECCce--------eE
Confidence            5999999999999 99999999999 4     5899999999999999985    2347899999998 5        77


Q ss_pred             eEEEeeeeccCCCCCceeEEeEEeCCCCeEEEEEeEEEEecCCCccccCCCC
Q 029787          137 RVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGME  188 (188)
Q Consensus       137 ~vliKeVQ~hpvt~~ilHVDF~~v~~~~~V~v~VPV~f~Ged~s~GvK~GG~  188 (188)
                      +||+|+||+||++++++||||++++++++|+++|||+|+|+  |+|+|+||+
T Consensus        63 ~vliKdvQ~hPvk~~ilHVDF~~V~~~ekV~v~VPV~~vGe--~~GvK~GGv  112 (237)
T 2zjr_S           63 PALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGR--SQGEVQGGL  112 (237)
T ss_dssp             BCCEEEEEECSSSCCEEEEEEECCCSSCCCEEEEECEEESC--CTTTTTTSE
T ss_pred             EEEEEEEEecCCCCCeEEEEEEEECCCCEEEEEEeEEEecC--CccccCCcE
Confidence            89999999999999999999999999999999999999999  789999984

>1b75_A Protein (50S ribosomal protein L25); RNA-binding protein, RNA binding protein; NMR {Escherichia coli} SCOP: b.53.1.1 PDB: 1d6k_A 1dfu_P 1giy_V 1ml5_v* 1p85_T 1p86_T 1vs6_V 1vs8_V 1vt2_V 2aw4_V 2awb_V 2gya_T 2gyc_T 2i2t_V 2i2v_V 2j28_V 2qam_V* 2qao_V* 2qba_V* 2qbc_V* ...

Probab=99.96  E-value=1.9e-30  Score=192.81  Aligned_cols=93  Identities=22%  Similarity=0.328  Sum_probs=85.6

Q ss_pred             eEEEEEEcCCCCChHhHHHHHCCCCcEEEecCCCCCCCCceeeEEEeHHHHHHHHhhhCCCcceeEEEEEEECCccCCCC
Q 029787           52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGD  131 (188)
Q Consensus        52 ~~L~a~~R~~~Gk~~arrLRr~G~VPgVvYG~~~~~~g~~~~~I~v~~~el~kllk~~~~~~~~s~v~~L~v~g~~~~g~  131 (188)
                      ++|+|++|++.||+++|+||++|+|||||||+     +.++++|+++.+++.+++++   .++.+++|+|+++|+     
T Consensus         2 ~~l~a~~R~~~Gk~~arrLRr~G~vPaVvYG~-----~~e~~~i~v~~~~~~~~l~~---~~~~~~~i~L~i~G~-----   68 (94)
T 1b75_A            2 FTINAEVRKEQGKGASRRLRAANKFPAIIYGG-----KEAPLAIELDHDKVMNMQAK---AEFYSEVLTIVVDGK-----   68 (94)
T ss_dssp             CCEEECSSCCSSSSSSSSTTTTTBCCEEEECS-----SSCCEEECCBSHHHHHHHTT---THHHHTCEEEEESSC-----
T ss_pred             eEEEEEEecccCChHHHHHHHCCCceEEEECC-----CCCCEEEEECHHHHHHHHhc---cCcceEEEEEEECCE-----
Confidence            57999999999999999999999999999998     57899999999999999974   445678999999985     


Q ss_pred             CcceEeEEEeeeeccCCCCCceeEEeEEe
Q 029787          132 LIEKVRVLPRKVHLHSGTDAPLNVTFLRA  160 (188)
Q Consensus       132 ~~e~~~vliKeVQ~hpvt~~ilHVDF~~v  160 (188)
                         ++.|++||||+||++++++||||++|
T Consensus        69 ---~~~vlikdvQ~hp~~~~i~HvDF~~v   94 (94)
T 1b75_A           69 ---EIKVKAQDVQRHPYKPKLQHIDFVRA   94 (94)
T ss_dssp             ---EEEECCSEEECCSSSCCCCEEEEEBC
T ss_pred             ---EEEEEEEEEEeCCCCCCeEEEEEEEC
Confidence               78899999999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	188
d1dfup_	94	b.53.1.1 (P:) Ribosomal protein L25 {Escherichia c	1e-07
d2zjrs1	175	b.53.1.1 (S:1-175) Ribosomal protein TL5 (general	3e-06

>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]} Length = 94

class: All beta proteins
fold: Ribosomal protein L25-like
superfamily: Ribosomal protein L25-like
family: Ribosomal protein L25-like
domain: Ribosomal protein L25
species: Escherichia coli [TaxId: 562]

 Score = 45.3 bits (107), Expect = 1e-07
 Identities = 22/108 (20%), Positives = 47/108 (43%), Gaps = 16/108 (14%)

Query: 53  TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRS 112
           TI A  R   G   S + R A + P+I+       +GG +  ++++ +   K++    ++
Sbjct: 3   TINAEVRKEQGKGASRRLRAANKFPAII-------YGGKEAPLAIELDH-DKVMNMQAKA 54

Query: 113 FFVSRLFDLEVRSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRA 160
            F S +  + V  +        +++V  + V  H       ++ F+RA
Sbjct: 55  EFYSEVLTIVVDGK--------EIKVKAQDVQRHPYKPKLQHIDFVRA 94

>d2zjrs1 b.53.1.1 (S:1-175) Ribosomal protein TL5 (general stress protein CTC) {Deinococcus radiodurans [TaxId: 1299]} Length = 175

class: All beta proteins
fold: Ribosomal protein L25-like
superfamily: Ribosomal protein L25-like
family: Ribosomal protein L25-like
domain: Ribosomal protein TL5 (general stress protein CTC)
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 12/125 (9%), Positives = 35/125 (28%), Gaps = 17/125 (13%)

Query: 64  TRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEV 123
            R   ++     + ++ + +E+          ++      +       +       +   
Sbjct: 7   PRTPKQKLDESMIAAVAYNKENNVS------FALDRKAFDRAFRQQSTTGLFDITVEGG- 59

Query: 124 RSEFGSGDLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGL 183
                     E    L + V +     AP++V F        +++ VP+   G       
Sbjct: 60  ----------ETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGRSQGEVQ 109

Query: 184 RKGME 188
              ++
Sbjct: 110 GGLVD 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d1feua_	185	Ribosomal protein TL5 (general stress protein CTC)	99.97
d2zjrs1	175	Ribosomal protein TL5 (general stress protein CTC)	99.97
d1dfup_	94	Ribosomal protein L25 {Escherichia coli [TaxId: 56	99.96

>d1feua_ b.53.1.1 (A:) Ribosomal protein TL5 (general stress protein CTC) {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Ribosomal protein L25-like
superfamily: Ribosomal protein L25-like
family: Ribosomal protein L25-like
domain: Ribosomal protein TL5 (general stress protein CTC)
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=2.6e-31  Score=216.71  Aligned_cols=115  Identities=23%  Similarity=0.379  Sum_probs=100.3

Q ss_pred             ceEEEEEEcCCCCChHhHHHHHCCCCcEEEecCCCCCCCCceeeEEEeHHHHHHHHhhhCCCcceeEEEEEEECCccCCC
Q 029787           51 DETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSG  130 (188)
Q Consensus        51 ~~~L~a~~R~~~Gk~~arrLRr~G~VPgVvYG~~~~~~g~~~~~I~v~~~el~kllk~~~~~~~~s~v~~L~v~g~~~~g  130 (188)
                      +++|+|+.|+..|+   ++|||+|+|||||||+     +. +.+|+++.+++.+++++.    +.++++.|++.++    
T Consensus         2 ~~~l~a~~Re~~~~---~~LRr~G~VPaViYG~-----~~-~~~i~v~~~e~~k~~~~~----~~~~~i~l~~~dg----   64 (185)
T d1feua_           2 EYRLKAYYREGEKP---SALRRAGKLPGLMYNR-----HL-NRKVYVDLVEFDKVFRQA----SIHHVIVLELPDG----   64 (185)
T ss_dssp             EEEEECEECSSSCH---HHHHHTTEEEEEEECS-----SC-EEEEEEEHHHHHHHHHHH----TTTSEEEEECTTS----
T ss_pred             eEEEEEEEecCCCc---hHHHhCCCceEEEECC-----CC-CcCEEecchHHHhHhhhh----hccceEEEEeecc----
Confidence            47899999987665   4599999999999997     34 589999999999999862    3456778888433    


Q ss_pred             CCcceEeEEEeeeeccCCCCCceeEEeEEeCCCCeEEEEEeEEEEecCCCccccCCCC
Q 029787          131 DLIEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGME  188 (188)
Q Consensus       131 ~~~e~~~vliKeVQ~hpvt~~ilHVDF~~v~~~~~V~v~VPV~f~Ged~s~GvK~GG~  188 (188)
                         +++.||+||||+||++++++||||++++ +++|+++|||+|+|+  |+|+|+||+
T Consensus        65 ---~~~~vlikevQ~~pv~~~i~HvDF~~v~-~~~v~v~VPv~~~G~--~~gvk~GG~  116 (185)
T d1feua_          65 ---QSLPTLVRQVNLDKRRRRPEHVDFFVLS-DEPVEMYVPLRFVGT--PAGVRAGGV  116 (185)
T ss_dssp             ---CEEEEEEEEEEECSSSSCEEEEEEEECC-SSCEEEEEEEEEESC--CHHHHTTCE
T ss_pred             ---hhhhheeeeeEecccccceeEEEEeecc-CceEEEEeceEEeec--ccccccccE
Confidence               4899999999999999999999999986 999999999999998  899999985

>d2zjrs1 b.53.1.1 (S:1-175) Ribosomal protein TL5 (general stress protein CTC) {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Ribosomal protein L25-like
superfamily: Ribosomal protein L25-like
family: Ribosomal protein L25-like
domain: Ribosomal protein TL5 (general stress protein CTC)
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.97  E-value=1.3e-32  Score=222.96  Aligned_cols=111  Identities=19%  Similarity=0.333  Sum_probs=99.9

Q ss_pred             EEEEEEcCCCCChHhHHHHHCCCCcEEEecCCCCCCCCceeeEEEeHHHHHHHHhhhCCCcceeEEEEEEECCccCCCCC
Q 029787           53 TILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGDL  132 (188)
Q Consensus        53 ~L~a~~R~~~Gk~~arrLRr~G~VPgVvYG~~~~~~g~~~~~I~v~~~el~kllk~~~~~~~~s~v~~L~v~g~~~~g~~  132 (188)
                      .|+|++|+      +|++|++|+||||+||+      ++++++++++++|.+++++    .+.|++|+|+++|+      
T Consensus         2 ~l~a~~r~------~k~~R~~G~VPaViYG~------~~~~~i~v~~~~l~k~l~~----~~~~~li~l~i~g~------   59 (175)
T d2zjrs1           2 ELTAKPRT------PKQKLDESMIAAVAYNK------ENNVSFALDRKAFDRAFRQ----QSTTGLFDITVEGG------   59 (175)
T ss_dssp             CCCBCCSC------CHHHHSSSCCCEEEESS------SCCCCCBCCHHHHHHHHHH----HTTSCCCBCCCTTC------
T ss_pred             eeEeccch------HHHHhhCCCCCEEEECC------CCCEEEEEcHHHHHHHHHh----cCcceEEEEEecCC------
Confidence            45667773      58999999999999996      3789999999999999986    34678999999875      


Q ss_pred             cceEeEEEeeeeccCCCCCceeEEeEEeCCCCeEEEEEeEEEEecCCCccccCCCC
Q 029787          133 IEKVRVLPRKVHLHSGTDAPLNVTFLRAPPEALLKIDVPLVFRGDDVSPGLRKGME  188 (188)
Q Consensus       133 ~e~~~vliKeVQ~hpvt~~ilHVDF~~v~~~~~V~v~VPV~f~Ged~s~GvK~GG~  188 (188)
                       +++.||+||+|+||++++++||||++++.+++|+++|||+|+|+  |+|+|+||+
T Consensus        60 -~~~~vlikevQ~~pv~~~i~HvDF~~v~~~~~i~v~VPi~~~G~--~~gvk~Gg~  112 (175)
T d2zjrs1          60 -ETFPALVKAVQMDKRKRAPIHVDFYMVTYGEPVEVSVPVHTTGR--SQGEVQGGL  112 (175)
T ss_dssp             -CCCBCCEEEEEECSSSCCEEEEEEECCCSSCCCEEEEECEEESC--CTTTTTTSE
T ss_pred             -ceEEEEehhhhhhhccCceeEEEEEecCCCcEEEEEEEEEeecc--cccccccce
Confidence             47899999999999999999999999999999999999999999  899999984

>d1dfup_ b.53.1.1 (P:) Ribosomal protein L25 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Ribosomal protein L25-like
superfamily: Ribosomal protein L25-like
family: Ribosomal protein L25-like
domain: Ribosomal protein L25
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.1e-30  Score=191.11  Aligned_cols=93  Identities=22%  Similarity=0.328  Sum_probs=86.6

Q ss_pred             eEEEEEEcCCCCChHhHHHHHCCCCcEEEecCCCCCCCCceeeEEEeHHHHHHHHhhhCCCcceeEEEEEEECCccCCCC
Q 029787           52 ETILAIPRASPGTRVSVKERKAGRVPSIVFEQEDGQHGGNKRLISVQTNQIRKLVGHLGRSFFVSRLFDLEVRSEFGSGD  131 (188)
Q Consensus        52 ~~L~a~~R~~~Gk~~arrLRr~G~VPgVvYG~~~~~~g~~~~~I~v~~~el~kllk~~~~~~~~s~v~~L~v~g~~~~g~  131 (188)
                      .+|+|++|+..||+++|+||++|+|||||||+     +.++++|+++.++|.+++++   .++.+.+++|+++|+     
T Consensus         2 ~~L~a~~R~~~Gk~~~r~lRr~G~vPaViYG~-----~~~~~~i~v~~~~l~~~l~~---~~~~~~~i~l~~~g~-----   68 (94)
T d1dfup_           2 FTINAEVRKEQGKGASRRLRAANKFPAIIYGG-----KEAPLAIELDHDKVMNMQAK---AEFYSEVLTIVVDGK-----   68 (94)
T ss_dssp             CEEECEECSCCSHHHHHHHHHTTEEEEEEECS-----SSCCEEEEEEHHHHHHHTTS---GGGGTSCBEEEETTE-----
T ss_pred             eEEEEEEeccCCcHHHHHHHHcCCccEEEECC-----CCCCcEEEecHHHHhhhhcc---cccccceEEEEECCe-----
Confidence            58999999999999999999999999999998     68899999999999999975   456788999999986     


Q ss_pred             CcceEeEEEeeeeccCCCCCceeEEeEEe
Q 029787          132 LIEKVRVLPRKVHLHSGTDAPLNVTFLRA  160 (188)
Q Consensus       132 ~~e~~~vliKeVQ~hpvt~~ilHVDF~~v  160 (188)
                         ++.|++||||+||++++++||||+++
T Consensus        69 ---~~~vlikevQ~~pv~~~i~HvDF~r~   94 (94)
T d1dfup_          69 ---EIKVKAQDVQRHPYKPKLQHIDFVRA   94 (94)
T ss_dssp             ---ECCEEEEEEEECSSSSCEEEEEEEEC
T ss_pred             ---EEEeeheeeeecCCCCCEEEEeeecC
Confidence               88899999999999999999999984