Citrus Sinensis ID: 029790

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
MFQPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ
cccHHHHHHHccccccEEEccccEEEcccccccccEEEEEEEcccccEEEcccccccccccEEEEEEEEcccccEEEEEEEccccccccccccEEEEccccccccEEEccccEEEEEEEEccccccccccccccHHHHHHHHHHHHHHccHHHHccccccccEEcccHHHHHHHHHHHHccccccccc
ccHHHHHHHHcccEEEEEEcccEEEEccccccccEEEEEEEEccccEEEEcccccccccccccEEEEEEccccccEEEEEEcccccccccccEEEEEcccccEEEEEEccccHHHHHHHHHccccccEEEccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccc
mfqpflffemkghevdafgIGTYLVTCYAQAALGCVFKLVeinkqpriklsedvskvsipckkrsyrlygkegyplvdimtgenepppkvgerilcrhpfneskrayvvPQKVEELLKcywpgssdkrredlptlKDTRERCIKQLEQMrpdhmrrlnptpykvsvSAKLYDFIHFLwlneapvgelq
MFQPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKqpriklsedvskvsipckkrsyrlygkegypLVDIMTGENEPPPKVGERILCrhpfneskrayvvpqkvEELLkcywpgssdkrredlptlkdTRERCIKQleqmrpdhmrrlnptPYKVSVSAKLYDFIHFLWLNEAPVGELQ
MFQPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ
***PFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTG*******VGERILCRHPFNESKRAYVVPQKVEELLKCYWP**************************************PYKVSVSAKLYDFIHFLWLNE*******
MFQPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPV****
MFQPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ
MFQPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAP*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MFQPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query188 2.2.26 [Sep-21-2011]
Q9VQX4555 Nicotinate phosphoribosyl no no 0.968 0.327 0.581 9e-60
Q95XX1562 Nicotinate phosphoribosyl yes no 0.925 0.309 0.525 3e-50
Q55G10589 Nicotinate phosphoribosyl yes no 0.936 0.298 0.481 5e-49
Q6XQN6538 Nicotinate phosphoribosyl yes no 0.898 0.314 0.362 2e-24
Q8CC86538 Nicotinate phosphoribosyl yes no 0.872 0.304 0.383 1e-23
Q6XQN1538 Nicotinate phosphoribosyl yes no 0.867 0.302 0.380 4e-23
Q6P3H4546 Nicotinate phosphoribosyl yes no 0.861 0.296 0.345 3e-22
A5PK51538 Nicotinate phosphoribosyl yes no 0.872 0.304 0.377 1e-20
O32090490 Nicotinate phosphoribosyl yes no 0.340 0.130 0.382 4e-07
>sp|Q9VQX4|PNCB_DROME Nicotinate phosphoribosyltransferase OS=Drosophila melanogaster GN=CG3714 PE=2 SV=2 Back     alignment and function desciption
 Score =  229 bits (583), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 107/184 (58%), Positives = 134/184 (72%), Gaps = 2/184 (1%)

Query: 5   FLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKR 64
            L    +GH++D FGIGT+LVTC  Q ALGCV+KLVEIN QPRIKLS+DV KV++P  K 
Sbjct: 374 ILSLNEQGHKIDCFGIGTHLVTCQRQPALGCVYKLVEINGQPRIKLSQDVEKVTMPGNKN 433

Query: 65  SYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGS 124
           +YRLY  +G+ L+D++   +EPPP VG+++LCRHPF ESKRAYV+P  VE L K YW   
Sbjct: 434 AYRLYSADGHALIDLLQKVSEPPPAVGQKVLCRHPFQESKRAYVIPSHVESLYKVYW--K 491

Query: 125 SDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPV 184
           S K  + LPTL+  RE+    L+ +R DH R LNPTPYKV+VS  LY+FIH LWL  AP+
Sbjct: 492 SGKICQQLPTLEQVREKVQISLKTLRNDHKRTLNPTPYKVAVSDNLYNFIHDLWLQNAPI 551

Query: 185 GELQ 188
           GEL 
Sbjct: 552 GELS 555
Catalyzes the conversion of nicotinic acid (NA) to NA mononucleotide (NaMN).
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 1EC: 1
>sp|Q95XX1|PNCB_CAEEL Nicotinate phosphoribosyltransferase OS=Caenorhabditis elegans GN=Y54G2A.17 PE=2 SV=3 Back     alignment and function description
>sp|Q55G10|PNCB_DICDI Nicotinate phosphoribosyltransferase OS=Dictyostelium discoideum GN=naprt PE=2 SV=1 Back     alignment and function description
>sp|Q6XQN6|PNCB_HUMAN Nicotinate phosphoribosyltransferase OS=Homo sapiens GN=NAPRT1 PE=1 SV=2 Back     alignment and function description
>sp|Q8CC86|PNCB_MOUSE Nicotinate phosphoribosyltransferase OS=Mus musculus GN=Naprt1 PE=2 SV=1 Back     alignment and function description
>sp|Q6XQN1|PNCB_RAT Nicotinate phosphoribosyltransferase OS=Rattus norvegicus GN=Naprt1 PE=2 SV=1 Back     alignment and function description
>sp|Q6P3H4|PNCB_DANRE Nicotinate phosphoribosyltransferase OS=Danio rerio GN=naprt1 PE=2 SV=2 Back     alignment and function description
>sp|A5PK51|PNCB_BOVIN Nicotinate phosphoribosyltransferase OS=Bos taurus GN=NAPRT1 PE=2 SV=2 Back     alignment and function description
>sp|O32090|PNCB_BACSU Nicotinate phosphoribosyltransferase OS=Bacillus subtilis (strain 168) GN=pncB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query188
224081698 559 predicted protein [Populus trichocarpa] 0.946 0.318 0.938 6e-96
224094304 559 predicted protein [Populus trichocarpa] 0.946 0.318 0.926 3e-95
255565240 561 nicotinate phosphoribosyltransferase, pu 0.946 0.317 0.932 4e-95
297821601 563 nicotinate phosphoribosyltransferase fam 0.946 0.316 0.910 4e-94
30682074 557 nicotinate phosphoribosyltransferase [Ar 0.946 0.319 0.910 1e-93
3242705 574 unknown protein [Arabidopsis thaliana] 0.946 0.310 0.910 1e-93
356511877 557 PREDICTED: nicotinate phosphoribosyltran 0.946 0.319 0.898 1e-92
343172726 559 nicotinate phosphoribosyltransferase, pa 0.946 0.318 0.887 6e-92
449463957 561 PREDICTED: nicotinate phosphoribosyltran 0.946 0.317 0.910 6e-92
449527307 555 PREDICTED: nicotinate phosphoribosyltran 0.946 0.320 0.910 9e-92
>gi|224081698|ref|XP_002306477.1| predicted protein [Populus trichocarpa] gi|222855926|gb|EEE93473.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  355 bits (910), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 167/178 (93%), Positives = 172/178 (96%)

Query: 11  KGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYG 70
           +GHEVDA+GIGTYLVTCYAQAALGCVFKLVEIN QPRIKLSEDVSKVSIPCKKRSYRLYG
Sbjct: 382 QGHEVDAYGIGTYLVTCYAQAALGCVFKLVEINNQPRIKLSEDVSKVSIPCKKRSYRLYG 441

Query: 71  KEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRRE 130
           +EGYPLVDIMTGENEP PKVGERILCRHPFNESKRAYVVPQ+VEELLKCYWPGSSDK RE
Sbjct: 442 REGYPLVDIMTGENEPSPKVGERILCRHPFNESKRAYVVPQQVEELLKCYWPGSSDKPRE 501

Query: 131 DLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ 188
           DLP LKD R+RCIKQLE MRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ
Sbjct: 502 DLPPLKDIRDRCIKQLEIMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ 559

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224094304|ref|XP_002310133.1| predicted protein [Populus trichocarpa] gi|222853036|gb|EEE90583.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255565240|ref|XP_002523612.1| nicotinate phosphoribosyltransferase, putative [Ricinus communis] gi|223537174|gb|EEF38807.1| nicotinate phosphoribosyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297821601|ref|XP_002878683.1| nicotinate phosphoribosyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297324522|gb|EFH54942.1| nicotinate phosphoribosyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30682074|ref|NP_179923.2| nicotinate phosphoribosyltransferase [Arabidopsis thaliana] gi|25054896|gb|AAN71931.1| unknown protein [Arabidopsis thaliana] gi|330252359|gb|AEC07453.1| nicotinate phosphoribosyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|3242705|gb|AAC23757.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356511877|ref|XP_003524648.1| PREDICTED: nicotinate phosphoribosyltransferase-like [Glycine max] Back     alignment and taxonomy information
>gi|343172726|gb|AEL99066.1| nicotinate phosphoribosyltransferase, partial [Silene latifolia] Back     alignment and taxonomy information
>gi|449463957|ref|XP_004149696.1| PREDICTED: nicotinate phosphoribosyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449527307|ref|XP_004170653.1| PREDICTED: nicotinate phosphoribosyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query188
TAIR|locus:2046872557 NAPRT2 "nicotinate phosphoribo 0.946 0.319 0.910 2.5e-88
TAIR|locus:2115095559 NAPRT1 "nicotinate phosphoribo 0.941 0.316 0.887 1.4e-85
FB|FBgn0031589555 CG3714 [Drosophila melanogaste 0.930 0.315 0.598 8.6e-56
WB|WBGene00021882562 Y54G2A.17 [Caenorhabditis eleg 0.925 0.309 0.525 3.7e-48
UNIPROTKB|Q95XX1562 Y54G2A.17 "Nicotinate phosphor 0.925 0.309 0.525 3.7e-48
DICTYBASE|DDB_G0268472589 naprt "nicotinate phosphoribos 0.936 0.298 0.481 7.9e-46
UNIPROTKB|F1NA80383 NAPRT1 "Uncharacterized protei 0.861 0.422 0.378 3.2e-26
UNIPROTKB|F1NY99539 NAPRT1 "Uncharacterized protei 0.861 0.300 0.378 1.3e-25
MGI|MGI:2442664538 Naprt1 "nicotinate phosphoribo 0.835 0.291 0.393 9.9e-25
RGD|1302945538 Naprt1 "nicotinate phosphoribo 0.835 0.291 0.387 4.5e-24
TAIR|locus:2046872 NAPRT2 "nicotinate phosphoribosyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 882 (315.5 bits), Expect = 2.5e-88, P = 2.5e-88
 Identities = 162/178 (91%), Positives = 171/178 (96%)

Query:    11 KGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYG 70
             +GHEVDAFGIGTYLVTCY+QAALGCVFKLVEIN QPRIKLSEDV+KVSIPCKKRSYRLYG
Sbjct:   380 QGHEVDAFGIGTYLVTCYSQAALGCVFKLVEINNQPRIKLSEDVTKVSIPCKKRSYRLYG 439

Query:    71 KEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRRE 130
             KEGYPLVDIMTGENEPPPKVGER+LCRHPFNESKRAYVVPQ+VEELLKCYW GS+D+ RE
Sbjct:   440 KEGYPLVDIMTGENEPPPKVGERLLCRHPFNESKRAYVVPQRVEELLKCYWRGSADEARE 499

Query:   131 DLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ 188
              LP LK+ R+RCIKQLE MRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ
Sbjct:   500 VLPPLKEIRDRCIKQLENMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ 557
GO:0004516 "nicotinate phosphoribosyltransferase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0009435 "NAD biosynthetic process" evidence=IEA
GO:0019358 "nicotinate nucleotide salvage" evidence=IEA;ISS
GO:0019363 "pyridine nucleotide biosynthetic process" evidence=IEA
TAIR|locus:2115095 NAPRT1 "nicotinate phosphoribosyltransferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0031589 CG3714 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00021882 Y54G2A.17 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q95XX1 Y54G2A.17 "Nicotinate phosphoribosyltransferase" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0268472 naprt "nicotinate phosphoribosyltransferase-like protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1NA80 NAPRT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NY99 NAPRT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2442664 Naprt1 "nicotinate phosphoribosyltransferase domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1302945 Naprt1 "nicotinate phosphoribosyltransferase domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_V0531
nicotinate phosphoribosyltransferase (EC-2.4.2.11) (559 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pm.C_LG_VIII0550
nicotinate-nucleotide diphosphorylase (carboxylating) (EC-2.4.2.19) (329 aa)
•    •• 0.941
gw1.XIII.983.1
nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (237 aa)
•    •• 0.912
gw1.70.673.1
nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (237 aa)
•    •• 0.912
fgenesh4_pm.C_scaffold_308000002
nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase (EC-2.7.7 [...] (247 aa)
•    •• 0.911
grail3.0151001701
hypothetical protein (395 aa)
     •  0.899
grail3.0006001701
hypothetical protein (247 aa)
     •  0.899
fgenesh4_pg.C_scaffold_145000062
hypothetical protein (414 aa)
     •  0.899
eugene3.00440120
hypothetical protein (390 aa)
     •  0.899
estExt_fgenesh4_pm.C_970013
SubName- Full=Putative uncharacterized protein; (386 aa)
     •  0.899
gw1.VII.325.1
6,7-dimethyl-8-ribityllumazine synthase (180 aa)
      • 0.449

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
PLN02885545 PLN02885, PLN02885, nicotinate phosphoribosyltrans 1e-143
PRK09243464 PRK09243, PRK09243, nicotinate phosphoribosyltrans 2e-37
TIGR01513443 TIGR01513, NAPRTase_put, putative nicotinate phosp 3e-33
PRK12484443 PRK12484, PRK12484, nicotinate phosphoribosyltrans 2e-14
cd01570327 cd01570, NAPRTase_A, Nicotinate phosphoribosyltran 1e-11
pfam04095245 pfam04095, NAPRTase, Nicotinate phosphoribosyltran 5e-11
COG1488405 COG1488, PncB, Nicotinic acid phosphoribosyltransf 1e-10
cd01567343 cd01567, NAPRTase_PncB, Nicotinate phosphoribosylt 1e-05
PRK05321400 PRK05321, PRK05321, nicotinate phosphoribosyltrans 8e-04
cd01401377 cd01401, PncB_like, Nicotinate phosphoribosyltrans 0.003
>gnl|CDD|178473 PLN02885, PLN02885, nicotinate phosphoribosyltransferase Back     alignment and domain information 
 Score =  408 bits (1050), Expect = e-143
 Identities = 158/177 (89%), Positives = 169/177 (95%)

Query: 12  GHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGK 71
           GHE+DAFGIGT+LVTCYAQ ALGCV+KLVEIN QPRIKLSEDV KV+IPCKKR YRLYGK
Sbjct: 369 GHEIDAFGIGTHLVTCYAQPALGCVYKLVEINGQPRIKLSEDVEKVTIPCKKRCYRLYGK 428

Query: 72  EGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRRED 131
           EGYPLVD+MTGENEPPPKVGERILCRHPFNESKRAYVVPQ+VEELLKCYW GSS K RE+
Sbjct: 429 EGYPLVDLMTGENEPPPKVGERILCRHPFNESKRAYVVPQRVEELLKCYWDGSSGKPREE 488

Query: 132 LPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ 188
           LP+LK+ RERC+KQLE+MRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ
Sbjct: 489 LPSLKEIRERCMKQLERMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWLNEAPVGELQ 545

Length = 545
>gnl|CDD|236426 PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated Back     alignment and domain information
>gnl|CDD|233446 TIGR01513, NAPRTase_put, putative nicotinate phosphoribosyltransferase Back     alignment and domain information
>gnl|CDD|237112 PRK12484, PRK12484, nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|238804 cd01570, NAPRTase_A, Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A Back     alignment and domain information
>gnl|CDD|202885 pfam04095, NAPRTase, Nicotinate phosphoribosyltransferase (NAPRTase) family Back     alignment and domain information
>gnl|CDD|224405 COG1488, PncB, Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|238801 cd01567, NAPRTase_PncB, Nicotinate phosphoribosyltransferase (NAPRTase) family Back     alignment and domain information
>gnl|CDD|235406 PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|238695 cd01401, PncB_like, Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 188
PLN02885545 nicotinate phosphoribosyltransferase 100.0
PRK09243464 nicotinate phosphoribosyltransferase; Validated 100.0
TIGR01513443 NAPRTase_put putative nicotinate phosphoribosyltra 100.0
PRK12484443 nicotinate phosphoribosyltransferase; Provisional 100.0
PRK09198463 putative nicotinate phosphoribosyltransferase; Pro 99.83
KOG2511420 consensus Nicotinic acid phosphoribosyltransferase 99.8
COG1488405 PncB Nicotinic acid phosphoribosyltransferase [Coe 99.79
PHA02594470 nadV nicotinamide phosphoribosyl transferase; Prov 99.79
PRK05321400 nicotinate phosphoribosyltransferase; Provisional 99.65
TIGR01514394 NAPRTase nicotinate phosphoribosyltransferase. Thi 99.65
PF04095245 NAPRTase: Nicotinate phosphoribosyltransferase (NA 99.44
cd01569407 PBEF_like pre-B-cell colony-enhancing factor (PBEF 98.95
PRK07188352 nicotinate phosphoribosyltransferase; Provisional 98.94
PRK08662343 nicotinate phosphoribosyltransferase; Reviewed 98.46
cd01401377 PncB_like Nicotinate phosphoribosyltransferase (NA 97.01
>PLN02885 nicotinate phosphoribosyltransferase Back     alignment and domain information 
Probab=100.00  E-value=6.8e-54  Score=396.97  Aligned_cols=185  Identities=83%  Similarity=1.409  Sum_probs=175.4

Q ss_pred             chhHHHHHhCCCeeeEEeecCccccCCCCCccceEEEEEEECCcceeeecCCCCccCCCCcceEEEeecCCCCeeeeEEe
Q 029790            2 FQPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMT   81 (188)
Q Consensus         2 ~~~I~~L~~~Ga~ID~fGVGT~LvT~~~~P~lg~VYKLvei~g~P~~K~S~~~~K~t~PG~KqvyR~~~~~g~~~~D~i~   81 (188)
                      +++|.+|.++|++||+|||||+||||.++|+|||||||||++|+|+||+|++++|.|+||+|||||+||++|++.+|+|+
T Consensus       359 e~~i~~L~~~g~~id~fGVGT~LvT~~~~p~l~~VyKLVe~~g~p~~KlS~~~~K~t~PG~K~vyR~~~~~g~~~~D~i~  438 (545)
T PLN02885        359 EETLDALNKQGHEIDAFGIGTHLVTCYAQPALGCVYKLVEINGQPRIKLSEDVEKVTIPCKKRCYRLYGKEGYPLVDLMT  438 (545)
T ss_pred             HHHHHHHHHcCCCccEEecCCccccCCCCCCCceEEEEEEECCeeeeEecCCCCCccCCcceEEEEEEcCCCCEEEEEEe
Confidence            36899999999999999999999999999999999999999999999999999999999999999999877999999999


Q ss_pred             cCCCCCCCCCcceeeeCCCCCcceeeecCCceeeceeeeecC--CcccCCCCCCCHHHHHHHHHHHHhhCChhhhhccCC
Q 029790           82 GENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPG--SSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNP  159 (188)
Q Consensus        82 l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~Ll~~v~~~--Gk~v~~~~~psl~eiR~~~~~~l~~L~~~~~rl~~p  159 (188)
                      +.+|+.+..++.+.|+||.++|+++.+.++.+++||++||++  |+++  ++.|+|++||+|+++||++|||+++|+.||
T Consensus       439 l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Ll~~~~~~g~g~~~--~~~~~l~~~r~~~~~~l~~l~~~~~r~~~p  516 (545)
T PLN02885        439 GENEPPPKVGERILCRHPFNESKRAYVVPQRVEELLKCYWDGSSGKPR--EELPSLKEIRERCMKQLERMRPDHMRRLNP  516 (545)
T ss_pred             cCCCCCCCCCCceEEeCCccchheeeeccccHHhhhHHHeECCCCcCc--CCCCCHHHHHHHHHHHHhhCCHHHHhccCC
Confidence            999975667889999999999999999999999999999999  6554  589999999999999999999999999999


Q ss_pred             cccccccCHHHHHHHHHHHhccCCCCCCC
Q 029790          160 TPYKVSVSAKLYDFIHFLWLNEAPVGELQ  188 (188)
Q Consensus       160 ~~Y~V~lS~~L~~l~~~l~~~~~~~~~~~  188 (188)
                      ++|+|++|++|++++++||+++++++|++
T Consensus       517 ~~y~V~~s~~l~~~~~~l~~~~~~~~~~~  545 (545)
T PLN02885        517 TPYKVSVSAKLYDFIHFLWLNEAPVGELQ  545 (545)
T ss_pred             ccceeccCHHHHHHHHHHHHhcCccccCC
Confidence            99999999999999999999988888764

>PRK09243 nicotinate phosphoribosyltransferase; Validated Back     alignment and domain information
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase Back     alignment and domain information
>PRK12484 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism] Back     alignment and domain information
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism] Back     alignment and domain information
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional Back     alignment and domain information
>PRK05321 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase Back     alignment and domain information
>PF04095 NAPRTase: Nicotinate phosphoribosyltransferase (NAPRTase) family; InterPro: IPR015977 Nicotinate phosphoribosyltransferase (2 Back     alignment and domain information
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like Back     alignment and domain information
>PRK07188 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed Back     alignment and domain information
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
2f7f_A494 Crystal Structure Of Enterococcus Faecalis Putative 4e-15
>pdb|2F7F|A Chain A, Crystal Structure Of Enterococcus Faecalis Putative Nicotinate Phosphoribosyltransferase, New York Structural Genomics Consortium Length = 494 Back     alignment and structure 
Iteration: 1

 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 90/180 (50%), Gaps = 17/180 (9%)
Query: 3   QPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQ-----PRIKLSEDVSKV 57
              L  +M+  ++D +G+GT L+T Y Q ALG VFKLV I  +       IKLS +  KV
Sbjct: 298 NTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKV 357
Query: 58  SIPCKKRSYRLYGK-----EGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQK 112
           + P KK+ +R+  K     EG    D +T  NE  P+  E I   HP +     YV   +
Sbjct: 358 TTPGKKQVWRITRKSDKKSEG----DYVTLWNE-DPRQEEEIYMFHPVHTFINKYVRDFE 412
Query: 113 VEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYD 172
              +L+  +     KR  +LPTL + ++   + L+ +  ++ R LNP  Y V +S   ++
Sbjct: 413 ARPVLQDIFV--EGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPVDLSTDCWN 470

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query188
2f7f_A494 Nicotinate phosphoribosyltransferase, putative; st 2e-64
2i1o_A398 Nicotinate phosphoribosyltransferase; ZIN ION, zin 1e-32
2i14_A395 Nicotinate-nucleotide pyrophosphorylase; ligand bi 1e-25
1yir_A408 Naprtase 2, nicotinate phosphoribosyltransferase 2 1e-15
1ybe_A449 Naprtase, nicotinate phosphoribosyltransferase; st 2e-15
3os4_A407 Naprtase, nicotinate phosphoribosyltransferase; st 3e-15
1vlp_A441 Naprtase, nicotinate phosphoribosyltransferase; st 4e-15
2im5_A394 Nicotinate phosphoribosyltransferase; structural g 7e-12
3dhf_A484 Nicotinamide phosphoribosyltransferase; NMPRTASE, 3e-10
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1 Length = 494 Back     alignment and structure
 Score =  204 bits (522), Expect = 2e-64
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 7/177 (3%)

Query: 8   FEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEIN-----KQPRIKLSEDVSKVSIPCK 62
            +M+  ++D +G+GT L+T Y Q ALG VFKLV I       +  IKLS +  KV+ P K
Sbjct: 303 LKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKVTTPGK 362

Query: 63  KRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWP 122
           K+ +R+  K                P+  E I   HP +     YV   +   +L+  + 
Sbjct: 363 KQVWRITRKSDKKSEGDYVTLWNEDPRQEEEIYMFHPVHTFINKYVRDFEARPVLQDIF- 421

Query: 123 GSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIHFLWL 179
               KR  +LPTL + ++   + L+ +  ++ R LNP  Y V +S   ++    L  
Sbjct: 422 -VEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPVDLSTDCWNHKMNLLE 477
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A Length = 398 Back     alignment and structure
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1 Length = 395 Back     alignment and structure
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2 Length = 408 Back     alignment and structure
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2 Length = 449 Back     alignment and structure
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis} Length = 407 Back     alignment and structure
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2 Length = 441 Back     alignment and structure
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis} Length = 394 Back     alignment and structure
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A* Length = 484 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query188
2f7f_A494 Nicotinate phosphoribosyltransferase, putative; st 100.0
2i14_A395 Nicotinate-nucleotide pyrophosphorylase; ligand bi 99.91
2i1o_A398 Nicotinate phosphoribosyltransferase; ZIN ION, zin 99.9
3dhf_A484 Nicotinamide phosphoribosyltransferase; NMPRTASE, 99.9
1yir_A408 Naprtase 2, nicotinate phosphoribosyltransferase 2 99.74
2im5_A394 Nicotinate phosphoribosyltransferase; structural g 99.73
1ybe_A449 Naprtase, nicotinate phosphoribosyltransferase; st 99.73
1vlp_A441 Naprtase, nicotinate phosphoribosyltransferase; st 99.61
3os4_A407 Naprtase, nicotinate phosphoribosyltransferase; st 99.61
4hl7_A446 Naprtase, nicotinate phosphoribosyltransferase; st 99.6
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
Probab=100.00  E-value=4.9e-45  Score=334.69  Aligned_cols=176  Identities=31%  Similarity=0.461  Sum_probs=165.9

Q ss_pred             chhHHHHHhCCCeeeEEeecCccccCCCCCccceEEEEEEE---CCc--ceeeecCCCCccCCCCcceEEEeec-CCCCe
Q 029790            2 FQPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEI---NKQ--PRIKLSEDVSKVSIPCKKRSYRLYG-KEGYP   75 (188)
Q Consensus         2 ~~~I~~L~~~Ga~ID~fGVGT~LvT~~~~P~lg~VYKLvei---~g~--P~~K~S~~~~K~t~PG~KqvyR~~~-~~g~~   75 (188)
                      .++|.+|.++|+++|+|||||+|+||.++|++|+|||||++   +|+  |++|+|++++|.|+||+|+|||+|+ .+|.+
T Consensus       297 ~~~i~~l~~~G~~~~sfGvGT~Lt~~~~~~~ld~v~Klv~~~~~~G~~~pv~K~s~~~~K~s~pG~k~v~R~~~~~~g~~  376 (494)
T 2f7f_A          297 ENTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKVTTPGKKQVWRITRKSDKKS  376 (494)
T ss_dssp             HHHHHHHHHTTCCCCEEEECHHHHTTTTSCCCCCEEEEEEEECTTSSEEECCCCCSSTTSSCCCSCEEEEEEEETTTCCE
T ss_pred             HHHHHHHHHcCCCEEEEecCcccccCCCCCcccEEEEEEEEEcCCCcCccccccCCCCCCcCCCCceEEEEEeecCCCeE
Confidence            36899999999999999999999999999999999999999   999  9999999999999999999999998 57899


Q ss_pred             eeeEEecCCCCCCCCCcceeeeCCCCCcceeeecCCceeeceeeeecCCcccCCCCCCCHHHHHHHHHHHHhhCChhhhh
Q 029790           76 LVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMR  155 (188)
Q Consensus        76 ~~D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~Ll~~v~~~Gk~v~~~~~psl~eiR~~~~~~l~~L~~~~~r  155 (188)
                      .+|+|++.+|++ ..++.+.|+||.++|+++++.++.+++||++||++|++++  +.|+|++||+|++++|++||++++|
T Consensus       377 ~~d~i~~~~e~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~ll~~v~~~G~~~~--~~~~l~eir~~~~~~l~~l~~~~~r  453 (494)
T 2f7f_A          377 EGDYVTLWNEDP-RQEEEIYMFHPVHTFINKYVRDFEARPVLQDIFVEGKRVY--ELPTLDEIKQYAKENLDSLHEEYKR  453 (494)
T ss_dssp             EEEEEEETTCCG-GGCSEEEEECSSSTTSEEEEESEEEEECCEEEEETTEECC--CCCCHHHHHHHHHHHHHHSCHHHHC
T ss_pred             EEEEEEecCCCC-ccccceeeeCcchhhhhccccCccchhhhhhhhcCCEEcC--CCCCHHHHHHHHHHHHHhCCHHHhc
Confidence            999999999863 3456789999999999999999999999999999999974  7899999999999999999999999


Q ss_pred             ccCCcccccccCHHHHHHHHHHHhc
Q 029790          156 RLNPTPYKVSVSAKLYDFIHFLWLN  180 (188)
Q Consensus       156 l~~p~~Y~V~lS~~L~~l~~~l~~~  180 (188)
                      +.|||+|+|++|++|++++++|+++
T Consensus       454 ~~~p~~y~v~~s~~l~~~~~~~~~~  478 (494)
T 2f7f_A          454 DLNPQKYPVDLSTDCWNHKMNLLEK  478 (494)
T ss_dssp             SSSCCCCCEEECHHHHHHHHHHHHH
T ss_pred             ccCCcCCccccCHHHHHHHHHHHHH
Confidence            9999999999999999999999974
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A Back     alignment and structure
>3dhf_A Nicotinamide phosphoribosyltransferase; NMPRTASE, NAMPRTASE, visfatin, beryllium fluoride, nicotinamide D-ribonucleotide, pyrophosphate; HET: NMN; 1.80A {Homo sapiens} PDB: 3dgr_A* 3dhd_A* 3dkj_A* 3dkl_A* 2gvj_A* 2gvg_A* 2e5b_A 2e5c_A* 2e5d_A 2h3d_A* 2gvl_A 2h3b_A 2g95_A 2g96_A* 2g97_A* 3g8e_A* Back     alignment and structure
>1yir_A Naprtase 2, nicotinate phosphoribosyltransferase 2; structural genomics, protein structure initiative, hypothetical protein, NYSGXRC, PSI; 2.10A {Pseudomonas aeruginosa} SCOP: c.1.17.2 d.41.2.2 Back     alignment and structure
>2im5_A Nicotinate phosphoribosyltransferase; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.20A {Porphyromonas gingivalis} Back     alignment and structure
>1ybe_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.50A {Agrobacterium tumefaciens} SCOP: c.1.17.2 d.41.2.2 Back     alignment and structure
>1vlp_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, joint center for structural genomics; HET: MSE MES; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.17.2 d.41.2.2 Back     alignment and structure
>3os4_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel; HET: MSE; 1.60A {Yersinia pestis} Back     alignment and structure
>4hl7_A Naprtase, nicotinate phosphoribosyltransferase; structural genomics, protein structure initiative; 1.80A {Vibrio cholerae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 188
d2f7fa1345 c.1.17.1 (A:141-485) Putative nicotinate phosphori 4e-53
d1ytda1270 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltran 4e-22
d2i14a1279 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyropho 6e-18
d1yira1255 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltran 2e-16
d1vlpa2266 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltran 2e-14
d1ybea1266 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltran 5e-14
>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]} Length = 345 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Putative nicotinate phosphoribosyltransferase EF2626
species: Enterococcus faecalis [TaxId: 1351]

 Score =  170 bits (433), Expect = 4e-53
 Identities = 51/173 (29%), Positives = 82/173 (47%), Gaps = 7/173 (4%)

Query: 8   FEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQ-----PRIKLSEDVSKVSIPCK 62
            +M+  ++D +G+GT L+T Y Q ALG VFKLV I  +       IKLS +  KV+ P K
Sbjct: 163 LKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKVTTPGK 222

Query: 63  KRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWP 122
           K+ +R+  K                P+  E I   HP +     YV   +   +L+  + 
Sbjct: 223 KQVWRITRKSDKKSEGDYVTLWNEDPRQEEEIYMFHPVHTFINKYVRDFEARPVLQDIF- 281

Query: 123 GSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVSVSAKLYDFIH 175
               KR  +LPTL + ++   + L+ +  ++ R LNP  Y V +S   ++   
Sbjct: 282 -VEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQKYPVDLSTDCWNHKM 333
>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]} Length = 270 Back     information, alignment and structure
>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]} Length = 279 Back     information, alignment and structure
>d1yira1 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltransferase, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 255 Back     information, alignment and structure
>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 266 Back     information, alignment and structure
>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Length = 266 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query188
d2f7fa1345 Putative nicotinate phosphoribosyltransferase EF26 100.0
d1ytda1270 Nicotinate phosphoribosyltransferase Ta1145 {Therm 99.94
d2i14a1279 Nicotinate-nucleotide pyrophosphorylase PF1904 {Py 99.94
d1vlpa2266 Nicotinate phosphoribosyltransferase, C-terminal d 99.79
d1yira1255 Nicotinate phosphoribosyltransferase, C-terminal d 99.78
d1ybea1266 Nicotinate phosphoribosyltransferase, C-terminal d 99.75
>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Putative nicotinate phosphoribosyltransferase EF2626
species: Enterococcus faecalis [TaxId: 1351]

Probab=100.00  E-value=5.9e-49  Score=344.80  Aligned_cols=175  Identities=31%  Similarity=0.472  Sum_probs=165.5

Q ss_pred             hhHHHHHhCCCeeeEEeecCccccCCCCCccceEEEEEEECC-----cceeeecCCCCccCCCCcceEEEeecC-CCCee
Q 029790            3 QPFLFFEMKGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINK-----QPRIKLSEDVSKVSIPCKKRSYRLYGK-EGYPL   76 (188)
Q Consensus         3 ~~I~~L~~~Ga~ID~fGVGT~LvT~~~~P~lg~VYKLvei~g-----~P~~K~S~~~~K~t~PG~KqvyR~~~~-~g~~~   76 (188)
                      ++|.+|.++|++||+|||||+|+|+.++|+||||||||+++|     .|++|+|++++|.|+||+|+|||+|+. +|.+.
T Consensus       158 ~~I~~l~~~~~~id~FGvGt~L~~~~~~p~l~~v~Klv~i~g~~g~~~p~~K~s~~~~K~t~pG~K~v~R~~~~~~~~~~  237 (345)
T d2f7fa1         158 NTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIKLSSNAEKVTTPGKKQVWRITRKSDKKSE  237 (345)
T ss_dssp             HHHHHHHHTTCCCCEEEECHHHHTTTTSCCCCCEEEEEEEECTTSSEEECCCCCSSTTSSCCCSCEEEEEEEETTTCCEE
T ss_pred             HHHHHHHHcCCceeEeecCcceeecCCCCcccchhcceeecCCCCceeeeeeecCCCCCcCCCCCeeEEEEecCCCCeeE
Confidence            689999999999999999999999999999999999999987     499999999999999999999999985 47899


Q ss_pred             eeEEecCCCCCCCCCcceeeeCCCCCcceeeecCCceeeceeeeecCCcccCCCCCCCHHHHHHHHHHHHhhCChhhhhc
Q 029790           77 VDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRR  156 (188)
Q Consensus        77 ~D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~e~Ll~~v~~~Gk~v~~~~~psl~eiR~~~~~~l~~L~~~~~rl  156 (188)
                      +|+|++.+|. +..+..+.|+||.++++++.+.++.+++||++||++|+++.  ++|||++||+|+++||++||++++|+
T Consensus       238 ~D~i~l~~e~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~LL~~v~~~Gk~v~--~~~sl~eiR~r~~~~l~~l~~~~~rl  314 (345)
T d2f7fa1         238 GDYVTLWNED-PRQEEEIYMFHPVHTFINKYVRDFEARPVLQDIFVEGKRVY--ELPTLDEIKQYAKENLDSLHEEYKRD  314 (345)
T ss_dssp             EEEEEETTCC-GGGCSEEEEECSSSTTSEEEEESEEEEECCEEEEETTEECC--CCCCHHHHHHHHHHHHHHSCHHHHCS
T ss_pred             eEEEeecCCC-CCcCcceeeecCccchhheeccCcchhhhhhHHhcCCEEeC--CCCCHHHHHHHHHHHHHhCCHHHhcc
Confidence            9999999996 45677889999999999999999999999999999999974  68999999999999999999999999


Q ss_pred             cCCcccccccCHHHHHHHHHHHhc
Q 029790          157 LNPTPYKVSVSAKLYDFIHFLWLN  180 (188)
Q Consensus       157 ~~p~~Y~V~lS~~L~~l~~~l~~~  180 (188)
                      .|||+|+|++|++|++++++|+++
T Consensus       315 ~nP~~Y~V~ls~~L~~~~~~l~~~  338 (345)
T d2f7fa1         315 LNPQKYPVDLSTDCWNHKMNLLEK  338 (345)
T ss_dssp             SSCCCCCEEECHHHHHHHHHHHHH
T ss_pred             cCCcCCeeccCHHHHHHHHHHHHH
Confidence            999999999999999999999974
>d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2i14a1 c.1.17.1 (A:111-389) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1vlpa2 c.1.17.2 (A:150-415) Nicotinate phosphoribosyltransferase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yira1 c.1.17.2 (A:145-399) Nicotinate phosphoribosyltransferase, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ybea1 c.1.17.2 (A:168-433) Nicotinate phosphoribosyltransferase, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure