Citrus Sinensis ID: 029803

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHccccccEEEEEccHHHHHHHHHHcccccccccEEEEEccccccHHHHHHHHccccccEEEEEcccccccEEcccccccccccccHHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHccHHHEEEcHccHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHcccccccEEEEEEEcccHcHHHHHHHHHHHHccccEEEEEcccccccEcccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHc
Coil and Loop (DISEMBL)
MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTaltipedgqitaidvnretyeiGLPIIKKAGVDHKINFIESEALSVLDQLLKYsenegsfdyafvdadkdnyCNYHERLMKLLKVGGiavydntlwggtvavpeeqvpdhfrgsSRQAILDLNrsladdprvqlSHVALGDGITICRRIF
Flexible Loop (DISEMBL)
MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSladdprvqlshvalgdgiticrrif
Low Complexity Region (SEG)
MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered region (IsUnstruct)
*LLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQV**********AILDLNRSLADDPRVQLSHVALGDGITICRR**
Disordered Region (DISOPRED)
**LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered Region (DISEMBL)
MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Disordered Region (DISPRO)
**LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q9C5D7	232	Probable caffeoyl-CoA O-m	yes	no	0.957	0.771	0.688	7e-70
Q40313	247	Caffeoyl-CoA O-methyltran	N/A	no	0.957	0.724	0.597	4e-61
Q43161	241	Caffeoyl-CoA O-methyltran	N/A	no	0.957	0.742	0.588	2e-60
Q9C9W3	232	Putative caffeoyl-CoA O-m	no	no	0.935	0.754	0.597	4e-60
O65862	247	Caffeoyl-CoA O-methyltran	yes	no	0.957	0.724	0.592	1e-59
Q43095	247	Caffeoyl-CoA O-methyltran	N/A	no	0.957	0.724	0.592	1e-59
O65162	254	Caffeoyl-CoA O-methyltran	N/A	no	0.957	0.704	0.575	2e-59
O04899	240	Caffeoyl-CoA O-methyltran	N/A	no	0.957	0.745	0.586	4e-59
O65922	247	Caffeoyl-CoA O-methyltran	no	no	0.957	0.724	0.575	6e-59
O49499	259	Caffeoyl-CoA O-methyltran	no	no	0.957	0.691	0.581	1e-58

>sp|Q9C5D7|CAMT3_ARATH Probable caffeoyl-CoA O-methyltransferase At4g26220 OS=Arabidopsis thaliana GN=At4g26220 PE=2 SV=1

 Score =  263 bits (671), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 124/180 (68%), Positives = 152/180 (84%), Gaps = 1/180 (0%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQLM MLL LVNA+KTIE+GVFTGYSLLLTALT+PEDG++ AID+NR++YEIGLP+IKKA
Sbjct: 54  GQLMGMLLNLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKA 113

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GV+HKI+F ESEAL  LD+LL    NEG FD+AFVDADK NY NYHERL++L+KVGGI V
Sbjct: 114 GVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIV 173

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 187
           YDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALGDGITICRR++
Sbjct: 174 YDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRLY 232

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0EC: 4

>sp|Q40313|CAMT_MEDSA Caffeoyl-CoA O-methyltransferase OS=Medicago sativa GN=CCOMT PE=1 SV=1

 Score =  234 bits (596), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 107/179 (59%), Positives = 142/179 (79%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+GLP+IKKA
Sbjct: 68  GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA 127

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GVDHKI+F E  AL VLD+++K  +N GS+D+ FVDADKDNY NYH+RL+ L+KVGG+  
Sbjct: 128 GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIG 187

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
           YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGITICRRI
Sbjct: 188 YDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Medicago sativa (taxid: 3879)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43161|CAMT_STELP Caffeoyl-CoA O-methyltransferase OS=Stellaria longipes PE=2 SV=1

 Score =  231 bits (590), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 106/180 (58%), Positives = 143/180 (79%), Gaps = 1/180 (0%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQL++ +L+ V  KKTIE+GVFTGYSLL TAL+IP+DG+ITA+D++RE Y +GL +IKKA
Sbjct: 63  GQLLSFMLKTVKPKKTIEVGVFTGYSLLATALSIPDDGKITAVDIDREAYNVGLALIKKA 122

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GV+ KI+FI S+A+++LD LL     +GS+D+AFVDADK NY NYHERL++L+KVGGI  
Sbjct: 123 GVESKISFIVSDAMTLLDDLLADGRYQGSYDFAFVDADKTNYVNYHERLIELVKVGGIIA 182

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 187
           YDNTLWGGTVA+PE +VPD F  ++   +  LN  L  D R+ ++H+ +GDGIT CRR++
Sbjct: 183 YDNTLWGGTVALPESEVPD-FMKNNWVCVTKLNEILGSDARIDIAHLPVGDGITFCRRVY 241

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Stellaria longipes (taxid: 19744)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q9C9W3|CAMT1_ARATH Putative caffeoyl-CoA O-methyltransferase At1g67980 OS=Arabidopsis thaliana GN=At1g67980 PE=2 SV=1

 Score =  230 bits (587), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 107/179 (59%), Positives = 142/179 (79%), Gaps = 4/179 (2%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           G  ++ML++++NAK TIEIGVFTGYSLL TAL +PEDG+ITAID+++E YE+GL  IKKA
Sbjct: 57  GHFLSMLVKIMNAKNTIEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA 116

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GVDHKINFI S+ L  LDQL+    ++  FD+AF DADK +Y N+HERL+KL+KVGGI  
Sbjct: 117 GVDHKINFIHSDGLKALDQLVN---DKCEFDFAFADADKSSYVNFHERLLKLVKVGGIIA 173

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
           +DNTLW G VA  E+ VP+H R   R A+++ N+ LA DPRV++S +++GDGIT+CRR+
Sbjct: 174 FDNTLWFGFVAEDEDGVPEHMR-EYRAALIEFNKKLALDPRVEVSQISIGDGITLCRRL 231

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65862|CAMT1_POPTR Caffeoyl-CoA O-methyltransferase 1 OS=Populus trichocarpa GN=CCOAOMT1 PE=2 SV=1

 Score =  228 bits (582), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 106/179 (59%), Positives = 140/179 (78%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQ + MLL+LVNAK T+EIGV+TGYSLL TAL IPEDG+I A+D+NRE YE+GLP+I+KA
Sbjct: 68  GQFLNMLLKLVNAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINRENYELGLPVIQKA 127

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GV HKI+F E  AL VLDQ+++  +  GSFD+ FVDADKDNY NYH+RL++L+KVGG+  
Sbjct: 128 GVAHKIDFKEGPALPVLDQMIEDGKCHGSFDFIFVDADKDNYINYHKRLIELVKVGGLIG 187

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
           YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGIT+CRRI
Sbjct: 188 YDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|Q43095|CAMT_POPTM Caffeoyl-CoA O-methyltransferase OS=Populus tremuloides PE=2 SV=1

 Score =  228 bits (582), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 106/179 (59%), Positives = 140/179 (78%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQ + MLL+LVNAK T+EIGV+TGYSLL TAL IPEDG+I A+D+NRE YE+GLP+I+KA
Sbjct: 68  GQFLNMLLKLVNAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINRENYELGLPVIQKA 127

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GV HKI+F E  AL VLDQ+++  +  GSFD+ FVDADKDNY NYH+RL++L+KVGG+  
Sbjct: 128 GVAHKIDFKEGPALPVLDQMIEDGKYHGSFDFIFVDADKDNYINYHKRLIELVKVGGLIG 187

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
           YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGIT+CRRI
Sbjct: 188 YDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65162|CAMT_MESCR Caffeoyl-CoA O-methyltransferase OS=Mesembryanthemum crystallinum PE=2 SV=1

 Score =  228 bits (581), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 103/179 (57%), Positives = 141/179 (78%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQ + MLL+L+NAK TIEIGV+TGYSLL +AL +P+DG+I A+D+NRE YE+GLP+I+KA
Sbjct: 75  GQFLNMLLKLINAKNTIEIGVYTGYSLLASALALPDDGKILAMDINRENYELGLPVIQKA 134

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GV HKI+F E  AL VLD L++ ++N GSFD+AFVDADKDNY NYH+RL+ L+K+GG+  
Sbjct: 135 GVAHKIDFREGPALPVLDLLIEDAKNHGSFDFAFVDADKDNYGNYHKRLIDLVKIGGVIG 194

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
           YDNTLW G+VA P +     +    R  +++ N+++A DPRV++  + +GDGIT+CRRI
Sbjct: 195 YDNTLWNGSVAAPADAPMRKYVRYYRDFVMEFNKAIAADPRVEICQLPVGDGITLCRRI 253

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Mesembryanthemum crystallinum (taxid: 3544)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O04899|CAMT5_TOBAC Caffeoyl-CoA O-methyltransferase 5 OS=Nicotiana tabacum GN=CCOAOMT5 PE=2 SV=1

 Score =  227 bits (578), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 105/179 (58%), Positives = 139/179 (77%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQ + MLL+L+NAK T+EIGV+TGYSLL TAL IP+DG+I A+D+NRE YEIGLPII+KA
Sbjct: 61  GQFLNMLLKLINAKNTMEIGVYTGYSLLATALAIPDDGKILAMDINRENYEIGLPIIEKA 120

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GV HKI F E  AL VLDQL++  +N G++D+ FVDADKDNY NYH+R++ L+KVGG+  
Sbjct: 121 GVAHKIEFREGPALPVLDQLVEDKKNHGTYDFIFVDADKDNYINYHKRIIDLVKVGGLIG 180

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
           YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGIT+CRRI
Sbjct: 181 YDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 239

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers. Methylates 5-hydroxyferulolyl-CoA more efficiently than caffeoyl-CoA.

Nicotiana tabacum (taxid: 4097)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O65922|CAMT2_POPTR Caffeoyl-CoA O-methyltransferase 2 OS=Populus trichocarpa GN=CCOAOMT2 PE=2 SV=1

 Score =  226 bits (576), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 103/179 (57%), Positives = 140/179 (78%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQ + MLL+L+NAK T+EIGVFTGYSLL TAL IPEDG+I A+D+NRE YE+GLP+I+KA
Sbjct: 68  GQFLNMLLKLINAKNTMEIGVFTGYSLLATALAIPEDGKILAMDINRENYELGLPVIQKA 127

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           G++HKI F E  AL VLDQ+++  +  G++D+ FVDADKDNY NYH+RL++L+KVGG+  
Sbjct: 128 GLEHKIEFKEGPALPVLDQMIEDGKYHGTYDFIFVDADKDNYINYHKRLIELVKVGGLIG 187

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
           YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGIT+CRRI
Sbjct: 188 YDNTLWNGSVVAPADAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Populus trichocarpa (taxid: 3694)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

>sp|O49499|CAMT4_ARATH Caffeoyl-CoA O-methyltransferase 1 OS=Arabidopsis thaliana GN=CCOAOMT1 PE=1 SV=1

 Score =  226 bits (575), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 104/179 (58%), Positives = 139/179 (77%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQ + ML++LVNAK T+EIGV+TGYSLL TAL +PEDG+I A+DVNRE YE+GLPII+KA
Sbjct: 80  GQFLNMLIKLVNAKNTMEIGVYTGYSLLATALALPEDGKILAMDVNRENYELGLPIIEKA 139

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GV HKI+F E  AL VLD+++   +N G++D+ FVDADKDNY NYH+RL+ L+K+GG+  
Sbjct: 140 GVAHKIDFREGPALPVLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIG 199

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
           YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGITICRRI
Sbjct: 200 YDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRI 258

Methylates caffeoyl-CoA to feruloyl-CoA and 5-hydroxyferuloyl-CoA to sinapoyl-CoA. Plays a role in the synthesis of feruloylated polysaccharides. Involved in the reinforcement of the plant cell wall. Also involved in the responding to wounding or pathogen challenge by the increased formation of cell wall-bound ferulic acid polymers.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
255546215	228	o-methyltransferase, putative [Ricinus c	0.957	0.785	0.755	4e-75
224122628	236	predicted protein [Populus trichocarpa]	0.957	0.758	0.738	7e-73
255546213	228	o-methyltransferase, putative [Ricinus c	0.951	0.780	0.737	5e-72
171849075	237	Chain A, Crystal Structure Of Pfomt, Phe	0.967	0.763	0.681	3e-70
297738705	236	unnamed protein product [Vitis vinifera]	0.951	0.754	0.737	4e-70
225444995	282	PREDICTED: probable caffeoyl-CoA O-methy	0.951	0.631	0.737	7e-70
147799759	1625	hypothetical protein VITISV_020117 [Viti	0.951	0.109	0.737	1e-69
297803474	238	hypothetical protein ARALYDRAFT_913940 [	0.957	0.752	0.688	1e-68
18416703	232	putative caffeoyl-CoA O-methyltransferas	0.957	0.771	0.688	3e-68
4539418	242	caffeoyl-CoA O-methyltransferase-like pr	0.957	0.739	0.688	4e-68

>gi|255546215|ref|XP_002514167.1| o-methyltransferase, putative [Ricinus communis] gi|223546623|gb|EEF48121.1| o-methyltransferase, putative [Ricinus communis]

 Score =  285 bits (730), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 136/180 (75%), Positives = 161/180 (89%), Gaps = 1/180 (0%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQL+A+LL+LVNAKKTIE+GVFTGYSLLLTAL+IPEDG+ITAIDVNRETY+IGLPII+KA
Sbjct: 50  GQLIALLLQLVNAKKTIEVGVFTGYSLLLTALSIPEDGKITAIDVNRETYDIGLPIIRKA 109

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GV+HKI+F+ESEAL VLD+LLK   NEGSFD+AFVDADK NY NYHERL+KLLKVGGI V
Sbjct: 110 GVEHKIDFMESEALPVLDKLLKDHGNEGSFDFAFVDADKINYWNYHERLLKLLKVGGIVV 169

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 187
           YDNTLWGGTVA+PEE+ P+  R   RQ  ++LN+ LA D R+Q+SH +LGDGITICRR++
Sbjct: 170 YDNTLWGGTVAIPEEEAPEAMR-MGRQLTIELNKLLAADSRIQISHASLGDGITICRRLY 228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122628|ref|XP_002330529.1| predicted protein [Populus trichocarpa] gi|222872463|gb|EEF09594.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (711), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 133/180 (73%), Positives = 155/180 (86%), Gaps = 1/180 (0%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQLMAMLL+LVNA+KTIE+GVFTGYSLLLTAL+IP+DG+ITAIDVNRE YEIGLPII+ A
Sbjct: 58  GQLMAMLLKLVNAQKTIEVGVFTGYSLLLTALSIPKDGKITAIDVNREAYEIGLPIIRNA 117

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GV+HKINFIESEA  +LD+LL+   NEGSFD+AFVDADK NY NYHERLMKLLKVGGI V
Sbjct: 118 GVEHKINFIESEAQPILDKLLEDHGNEGSFDFAFVDADKVNYWNYHERLMKLLKVGGIVV 177

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 187
           YDNTLWGGTVA+ EE  P++ + + RQ  ++ N+ LA D RVQ+SH   GDGITICRRI+
Sbjct: 178 YDNTLWGGTVALSEESTPENMK-AGRQLTIEFNKLLAADSRVQISHAPSGDGITICRRIY 236

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546213|ref|XP_002514166.1| o-methyltransferase, putative [Ricinus communis] gi|223546622|gb|EEF48120.1| o-methyltransferase, putative [Ricinus communis]

 Score =  275 bits (704), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 132/179 (73%), Positives = 155/179 (86%), Gaps = 1/179 (0%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQ MAMLL+LVNAKKTIE+GVFTGYSLLLTAL+IPEDG+I AIDV+RE YEIGLPII+KA
Sbjct: 50  GQFMAMLLQLVNAKKTIEVGVFTGYSLLLTALSIPEDGKIVAIDVDREAYEIGLPIIRKA 109

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GV+HKI+F+ESEAL VLD+LLK   NE SFD+AFVDADK NY NYHERL+KL+KVGGI +
Sbjct: 110 GVEHKIDFMESEALPVLDKLLKEHGNESSFDFAFVDADKINYWNYHERLLKLVKVGGIVI 169

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
           YDN+LW G+VAVPEE+ P+H R   RQ  ++ N+ LA D RVQ+SH +LGDGITICRRI
Sbjct: 170 YDNSLWRGSVAVPEEEAPEHLR-FCRQLTIEHNKFLAADSRVQISHASLGDGITICRRI 227

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171849075|pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum gi|171849076|pdb|3C3Y|B Chain B, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum gi|37720881|gb|AAN61072.1| O-methyltransferase [Mesembryanthemum crystallinum]

 Score =  269 bits (688), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 124/182 (68%), Positives = 155/182 (85%), Gaps = 1/182 (0%)

Query: 6   IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK 65
           + GQLM+ +L+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+ITAID +RE YEIGLP I+
Sbjct: 57  LAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIR 116

Query: 66  KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 125
           KAGV+HKINFIES+A+  LD LL+  E+EGS+D+ FVDADK NY  YHERLMKL+KVGGI
Sbjct: 117 KAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGI 176

Query: 126 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 185
             YDNTLWGGTVA PE +VPD F   +R+A+++LN+ LA DPR+++ H+ LGDGIT CRR
Sbjct: 177 VAYDNTLWGGTVAQPESEVPD-FMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRR 235

Query: 186 IF 187
           ++
Sbjct: 236 LY 237

Source: Mesembryanthemum crystallinum

Species: Mesembryanthemum crystallinum

Genus: Mesembryanthemum

Family: Aizoaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738705|emb|CBI27950.3| unnamed protein product [Vitis vinifera]

 Score =  269 bits (687), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 132/179 (73%), Positives = 155/179 (86%), Gaps = 1/179 (0%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQLM MLLRLVNAKKTIEIGVFTGYSLLLTAL+IP+DG+ITAIDV+R+ YE+GLP+I+KA
Sbjct: 58  GQLMDMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAYEMGLPVIRKA 117

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GV+HKINFIES+AL VLD+LL+  ENEG FD+AFVDADK NY NYHERLMKLLK+GGI V
Sbjct: 118 GVEHKINFIESQALPVLDKLLEEHENEGIFDFAFVDADKVNYKNYHERLMKLLKMGGIVV 177

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
           YDNTL GGTVA+PEE V ++ R  +R+  ++LN  LA DPRVQ+    LGDGITICRR+
Sbjct: 178 YDNTLRGGTVAMPEELVAENLR-ENRRLTIELNNFLAADPRVQICLAPLGDGITICRRV 235

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444995|ref|XP_002279921.1| PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220-like [Vitis vinifera]

 Score =  268 bits (685), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 132/179 (73%), Positives = 155/179 (86%), Gaps = 1/179 (0%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQLM MLLRLVNAKKTIEIGVFTGYSLLLTAL+IP+DG+ITAIDV+R+ YE+GLP+I+KA
Sbjct: 104 GQLMDMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAYEMGLPVIRKA 163

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GV+HKINFIES+AL VLD+LL+  ENEG FD+AFVDADK NY NYHERLMKLLK+GGI V
Sbjct: 164 GVEHKINFIESQALPVLDKLLEEHENEGIFDFAFVDADKVNYKNYHERLMKLLKMGGIVV 223

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
           YDNTL GGTVA+PEE V ++ R  +R+  ++LN  LA DPRVQ+    LGDGITICRR+
Sbjct: 224 YDNTLRGGTVAMPEELVAENLR-ENRRLTIELNNFLAADPRVQICLAPLGDGITICRRV 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799759|emb|CAN75051.1| hypothetical protein VITISV_020117 [Vitis vinifera]

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 132/179 (73%), Positives = 155/179 (86%), Gaps = 1/179 (0%)

Query: 8    GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
            GQLM MLLRLVNAKKTIEIGVFTGYSLLLTAL+IP+DG+ITAIDV+R+ YE+GLP+I+KA
Sbjct: 1447 GQLMDMLLRLVNAKKTIEIGVFTGYSLLLTALSIPDDGKITAIDVDRQAYEMGLPVIRKA 1506

Query: 68   GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
            GV+HKINFIES+AL VLD+LL+  ENEG FD+AFVDADK NY NYHERLMKLLK+GGI V
Sbjct: 1507 GVEHKINFIESQALPVLDKLLEEHENEGIFDFAFVDADKXNYKNYHERLMKLLKMGGIVV 1566

Query: 128  YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
            YDNTL GGTVA+PEE V ++ R  +R+  ++LN  LA DPRVQ+    LGDGITICRR+
Sbjct: 1567 YDNTLRGGTVAMPEELVAENLR-ENRRLTIELNNFLAADPRVQICLAPLGDGITICRRV 1624

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803474|ref|XP_002869621.1| hypothetical protein ARALYDRAFT_913940 [Arabidopsis lyrata subsp. lyrata] gi|297315457|gb|EFH45880.1| hypothetical protein ARALYDRAFT_913940 [Arabidopsis lyrata subsp. lyrata]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 124/180 (68%), Positives = 152/180 (84%), Gaps = 1/180 (0%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQLM MLL+LVNA+KTIE+GVFTGYSLLLTALT+PEDG++ AIDVNR++YEIGLP+IKK 
Sbjct: 60  GQLMGMLLKLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDVNRDSYEIGLPVIKKV 119

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GV+HKI+F ESEAL  LD+LL    NEG FD+AFVDADK NY NYHERL++L+KVGGI V
Sbjct: 120 GVEHKIDFRESEALPALDELLNDKANEGGFDFAFVDADKVNYWNYHERLIRLIKVGGIIV 179

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 187
           YDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALGDGITICRR++
Sbjct: 180 YDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRLY 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416703|ref|NP_567739.1| putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana] gi|30580368|sp|Q9C5D7.1|CAMT3_ARATH RecName: Full=Probable caffeoyl-CoA O-methyltransferase At4g26220; AltName: Full=Trans-caffeoyl-CoA 3-O-methyltransferase; Short=CCoAMT; Short=CCoAOMT gi|13430810|gb|AAK26027.1|AF360317_1 putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana] gi|15810549|gb|AAL07162.1| putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana] gi|332659772|gb|AEE85172.1| putative caffeoyl-CoA O-methyltransferase [Arabidopsis thaliana]

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 124/180 (68%), Positives = 152/180 (84%), Gaps = 1/180 (0%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQLM MLL LVNA+KTIE+GVFTGYSLLLTALT+PEDG++ AID+NR++YEIGLP+IKKA
Sbjct: 54  GQLMGMLLNLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKA 113

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GV+HKI+F ESEAL  LD+LL    NEG FD+AFVDADK NY NYHERL++L+KVGGI V
Sbjct: 114 GVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIV 173

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 187
           YDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALGDGITICRR++
Sbjct: 174 YDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRLY 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4539418|emb|CAB38951.1| caffeoyl-CoA O-methyltransferase-like protein [Arabidopsis thaliana] gi|7269473|emb|CAB79477.1| caffeoyl-CoA O-methyltransferase-like protein [Arabidopsis thaliana]

 Score =  262 bits (670), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/180 (68%), Positives = 152/180 (84%), Gaps = 1/180 (0%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQLM MLL LVNA+KTIE+GVFTGYSLLLTALT+PEDG++ AID+NR++YEIGLP+IKKA
Sbjct: 64  GQLMGMLLNLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKA 123

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GV+HKI+F ESEAL  LD+LL    NEG FD+AFVDADK NY NYHERL++L+KVGGI V
Sbjct: 124 GVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIV 183

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 187
           YDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALGDGITICRR++
Sbjct: 184 YDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRLY 242

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:2136799	232	CCoAOMT7 "caffeoyl coenzyme A	0.957	0.771	0.688	4.7e-64
TAIR|locus:2200271	232	CCOAMT "caffeoyl-CoA 3-O-methy	0.935	0.754	0.597	8.6e-56
TAIR|locus:2124286	259	CCoAOMT1 "caffeoyl coenzyme A	0.957	0.691	0.581	1.6e-54
UNIPROTKB|Q7F8T6	292	ROMT-17 "Tricin synthase 2" [O	0.957	0.613	0.553	6.3e-53
TAIR|locus:2200256	233	TSM1 [Arabidopsis thaliana (ta	0.925	0.742	0.562	1.5e-51
UNIPROTKB|Q9XGP7	252	ROMT-15 "Tricin synthase 1" [O	0.946	0.702	0.565	2e-49
ZFIN|ZDB-GENE-030131-1072	286	comtd1 "catechol-O-methyltrans	0.935	0.611	0.434	2.4e-35
UNIPROTKB|F1NI85	267	COMTD1 "Uncharacterized protei	0.935	0.655	0.434	2.2e-34
TAIR|locus:2079557	290	OMTF3 "O-MTase family 3 protei	0.909	0.586	0.429	2.9e-32
DICTYBASE|DDB_G0271590	251	omt1 "O-methyltransferase fami	0.909	0.677	0.421	1.6e-29

TAIR|locus:2136799 CCoAOMT7 "caffeoyl coenzyme A ester O-methyltransferase 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 124/180 (68%), Positives = 152/180 (84%)

Query:     8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
             GQLM MLL LVNA+KTIE+GVFTGYSLLLTALT+PEDG++ AID+NR++YEIGLP+IKKA
Sbjct:    54 GQLMGMLLNLVNARKTIEVGVFTGYSLLLTALTLPEDGKVIAIDMNRDSYEIGLPVIKKA 113

Query:    68 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
             GV+HKI+F ESEAL  LD+LL    NEG FD+AFVDADK NY NYHERL++L+KVGGI V
Sbjct:   114 GVEHKIDFKESEALPALDELLNNKVNEGGFDFAFVDADKLNYWNYHERLIRLIKVGGIIV 173

Query:   128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 187
             YDNTLWGG+VA P+   P+ +R   ++A L+LN+ L+ D RVQ+S  ALGDGITICRR++
Sbjct:   174 YDNTLWGGSVAEPDSSTPE-WRIEVKKATLELNKKLSADQRVQISQAALGDGITICRRLY 232

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

TAIR|locus:2200271 CCOAMT "caffeoyl-CoA 3-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 107/179 (59%), Positives = 142/179 (79%)

Query:     8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
             G  ++ML++++NAK TIEIGVFTGYSLL TAL +PEDG+ITAID+++E YE+GL  IKKA
Sbjct:    57 GHFLSMLVKIMNAKNTIEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA 116

Query:    68 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
             GVDHKINFI S+ L  LDQL+    ++  FD+AF DADK +Y N+HERL+KL+KVGGI  
Sbjct:   117 GVDHKINFIHSDGLKALDQLVN---DKCEFDFAFADADKSSYVNFHERLLKLVKVGGIIA 173

Query:   128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
             +DNTLW G VA  E+ VP+H R   R A+++ N+ LA DPRV++S +++GDGIT+CRR+
Sbjct:   174 FDNTLWFGFVAEDEDGVPEHMR-EYRAALIEFNKKLALDPRVEVSQISIGDGITLCRRL 231

GO:0005737 "cytoplasm" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

TAIR|locus:2124286 CCoAOMT1 "caffeoyl coenzyme A O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 104/179 (58%), Positives = 139/179 (77%)

Query:     8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
             GQ + ML++LVNAK T+EIGV+TGYSLL TAL +PEDG+I A+DVNRE YE+GLPII+KA
Sbjct:    80 GQFLNMLIKLVNAKNTMEIGVYTGYSLLATALALPEDGKILAMDVNRENYELGLPIIEKA 139

Query:    68 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
             GV HKI+F E  AL VLD+++   +N G++D+ FVDADKDNY NYH+RL+ L+K+GG+  
Sbjct:   140 GVAHKIDFREGPALPVLDEIVADEKNHGTYDFIFVDADKDNYINYHKRLIDLVKIGGVIG 199

Query:   128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
             YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGITICRRI
Sbjct:   200 YDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITICRRI 258

GO:0005634 "nucleus" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009805 "coumarin biosynthetic process" evidence=RCA;IMP

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q7F8T6 ROMT-17 "Tricin synthase 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 99/179 (55%), Positives = 136/179 (75%)

Query:     8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
             GQL+++LL L  AK TIE+GVFTG S+L TAL IP+DG++ AIDV+RE +++GLP+IKKA
Sbjct:   113 GQLLSLLLNLTGAKNTIEVGVFTGCSVLATALAIPDDGKVVAIDVSREYFDLGLPVIKKA 172

Query:    68 GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
             GV HK++F E  A+ +LD LL   ENEG FD+AFVDADK NY  YHERL++L++ GG+  
Sbjct:   173 GVAHKVDFREGAAMPILDNLLANEENEGKFDFAFVDADKGNYGEYHERLLRLVRAGGVLA 232

Query:   128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
             YDNTLWGG+VA+ ++ V + F    R++I+  N  +A DPRV+   + + DGIT+CRR+
Sbjct:   233 YDNTLWGGSVALEDDSVLEEFDQDIRRSIVAFNAKIAGDPRVEAVQLPVSDGITLCRRL 291

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2200256 TSM1 [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 99/176 (56%), Positives = 139/176 (78%)

Query:    11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD 70
             ++ML++++NAK TIEIGVFTGYSL   AL +PEDG+ITAID+++  Y +GL  +KKAGVD
Sbjct:    60 LSMLVKIINAKNTIEIGVFTGYSLFTVALALPEDGRITAIDIDQAGYNLGLEFMKKAGVD 119

Query:    71 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN 130
             HKINFI+S+A+  LDQLL   + E  +D+AFVDADK NY  + E+L+KL+KVGGI  +DN
Sbjct:   120 HKINFIQSDAVRGLDQLLNGEKQE--YDFAFVDADKTNYVYFLEKLLKLVKVGGIIAFDN 177

Query:   131 TLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
             TLW GT+   E +VP H R + R+A+L+ N+ LA DPRV+++ +++GDG+T+CRR+
Sbjct:   178 TLWFGTLIQKENEVPGHMR-AYREALLEFNKILARDPRVEIAQISIGDGLTLCRRL 232

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IDA

GO:0048316 "seed development" evidence=IMP

GO:0080012 "trihydroxyferuloyl spermidine O-methyltransferase activity" evidence=IMP;IDA

GO:0080076 "caffeoyl CoA:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080077 "trihydroxyferuloyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080078 "tricaffeoyl spermidine:S-adenosyl-L-methionine O-methyltransferase activity" evidence=IDA

GO:0080088 "spermidine hydroxycinnamate conjugate biosynthetic process" evidence=IDA

GO:0010584 "pollen exine formation" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q9XGP7 ROMT-15 "Tricin synthase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
 Identities = 103/182 (56%), Positives = 134/182 (73%)

Query:     9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG 68
             QL+ MLL++  AK+TIE+GVFTGYSLL TAL +PEDG++ AID +RE+YEIG P ++KAG
Sbjct:    71 QLLGMLLKMAGAKRTIEVGVFTGYSLLATALALPEDGKVVAIDPDRESYEIGRPFLEKAG 130

Query:    69 VDHKINFIESEALSVLDQLLKYSE---NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 125
             V HK++F E + L  LD+LL        E +FD+AFVDADK NY  YHE+L++L++VGG 
Sbjct:   131 VAHKVDFREGKGLEKLDELLAEEAAAGREAAFDFAFVDADKPNYVKYHEQLLQLVRVGGH 190

Query:   126 AVYDNTLWGGTVAVPEEQ-VPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICR 184
              VYDNTLW GTVA+P +  + D  R  S  AI DLN  LA DPR+ +  +A+ DGITICR
Sbjct:   191 IVYDNTLWAGTVALPPDTPLSDLDRRFS-VAIRDLNSRLAADPRIDVCQLAIADGITICR 249

Query:   185 RI 186
             R+
Sbjct:   250 RL 251

GO:0005634 "nucleus" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

ZFIN|ZDB-GENE-030131-1072 comtd1 "catechol-O-methyltransferase domain containing 1" [Danio rerio (taxid:7955)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 79/182 (43%), Positives = 116/182 (63%)

Query:     1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 60
             M++ +   QLMA L +L+ A KTIEIG++TGY+ L  AL +PE+G++ A ++N +  +IG
Sbjct:   108 MMVASEQAQLMANLAKLIEANKTIEIGLYTGYNALSLALVVPENGRVVACEINEDYVKIG 167

Query:    61 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 120
              P   +AGV++KI+     A+  LD+LL   E  G +D+ F+DADK NY  Y+E+ ++L+
Sbjct:   168 KPFFAEAGVENKIDIRLKPAVETLDELLSAGE-AGMYDFVFIDADKKNYETYYEKSLQLV 226

Query:   121 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 180
             + GGI   DN LWGG V  P E   D     S QAI  LN+ L  D R+ LS + +GDG+
Sbjct:   227 RKGGIVAIDNVLWGGRVINPAE---DDL---SSQAIDKLNKKLHKDERIDLSMLTVGDGL 280

Query:   181 TI 182
             T+
Sbjct:   281 TL 282

GO:0008171 "O-methyltransferase activity" evidence=IEA

UNIPROTKB|F1NI85 COMTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 79/182 (43%), Positives = 116/182 (63%)

Query:     1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 60
             M++     QLMA L++L+ AKK IE+GV TGY+ L  AL +P++G++ A D+N +  +IG
Sbjct:    89 MMVSCDQAQLMANLIKLIKAKKVIEVGVLTGYNALSMALALPDNGRVIACDINEDYAKIG 148

Query:    61 LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 120
              P+ K+AGVDHKI+     A   LD+LL   E E +FD+AF+DADK++Y  Y+E+ ++L+
Sbjct:   149 KPLWKEAGVDHKIDLRIKPATQTLDELLAGGEAE-TFDFAFIDADKESYNEYYEKCLRLI 207

Query:   121 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 180
             K GGI   DN L  G V  P +   D     + Q+I  LN  L  D RV +S + +GDG+
Sbjct:   208 KKGGIIAIDNVLRCGMVLKPRK---DDL---ATQSIHHLNEKLVRDARVNISMIPMGDGV 261

Query:   181 TI 182
             T+
Sbjct:   262 TL 263

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

TAIR|locus:2079557 OMTF3 "O-MTase family 3 protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 76/177 (42%), Positives = 109/177 (61%)

Query:     9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG 68
             QL+AML+ ++ AK+ IE+GV+TGYS L  AL +PE G++ A D +    E+     + AG
Sbjct:   120 QLLAMLVEILGAKRCIEVGVYTGYSSLAVALVLPESGRLVACDKDANALEVAKRYYELAG 179

Query:    69 VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128
             V HK+      A   L  +++  E E S+D+AF+DADK  Y  Y E L++L++VGG+ V 
Sbjct:   180 VSHKVTVKHGLAAESLMSMIQNGE-ESSYDFAFLDADKAMYQEYFESLLRLVRVGGVIVI 238

Query:   129 DNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 185
             DN LW G VA  +  V D    S R    + N+ L DD RV +S V++GDG+TICR+
Sbjct:   239 DNVLWHGWVA--DSTVNDERTISLR----NFNKKLMDDQRVSISMVSIGDGMTICRK 289

GO:0005576 "extracellular region" evidence=ISM

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0008276 "protein methyltransferase activity" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

DICTYBASE|DDB_G0271590 omt1 "O-methyltransferase family 3 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 78/185 (42%), Positives = 116/185 (62%)

Query:     9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG 68
             Q   +LL+++NAKK I++GV+TG S L  AL++P+DG++T+ID  R+  E      KKA 
Sbjct:    67 QFFTLLLKVLNAKKAIDVGVYTGLSSLSFALSMPDDGKVTSIDCVRDYEECCHLHWKKAN 126

Query:    69 VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY 128
             VDHKIN +   A + L +L+   E+ G+FD+ F+DADKD+Y  Y+E  +KL++ GGI  +
Sbjct:   127 VDHKINLVIDNAKNHLQKLIDNGES-GTFDFIFIDADKDSYDAYYELSLKLIRKGGIIAF 185

Query:   129 DNTLWGGTVAV------PEEQVPDHFRGS-SRQAILD----LNRSLADDPRVQLSHVALG 177
             DN L+ G   V      PE+Q+   F G  S Q ++D    LN  +A+D RV  + + L 
Sbjct:   186 DNILFFGATLVDHDSKKPEDQI---FLGCPSFQRMVDALKLLNEKIANDERVIKTMLPLS 242

Query:   178 DGITI 182
             DGIT+
Sbjct:   243 DGITL 247

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0042409 "caffeoyl-CoA O-methyltransferase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C5D7	CAMT3_ARATH	2, ., 1, ., 1, ., 1, 0, 4	0.6888	0.9572	0.7715	yes	no
O65862	CAMT1_POPTR	2, ., 1, ., 1, ., 1, 0, 4	0.5921	0.9572	0.7246	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.1.1.104	0.914
3rd Layer	2.1.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_1450034 hypothetical protein (236 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
PLN02781	234	PLN02781, PLN02781, Probable caffeoyl-CoA O-methyl	6e-92
pfam01596	204	pfam01596, Methyltransf_3, O-methyltransferase	1e-90
PLN02589	247	PLN02589, PLN02589, caffeoyl-CoA O-methyltransfera	3e-78
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	2e-44
PLN02476	278	PLN02476, PLN02476, O-methyltransferase	3e-43
pfam13578	105	pfam13578, Methyltransf_24, Methyltransferase doma	2e-09
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	1e-04
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	0.001
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	0.001

>gnl|CDD|215417 PLN02781, PLN02781, Probable caffeoyl-CoA O-methyltransferase

 Score =  267 bits (684), Expect = 6e-92
 Identities = 109/180 (60%), Positives = 150/180 (83%), Gaps = 2/180 (1%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           G  ++ML++++NAK T+EIGVFTGYSLL TAL +PEDG+ITAID+++E YE+GL  IKKA
Sbjct: 57  GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA 116

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GVDHKINFI+S+ALS LDQLL  ++ +  FD+AFVDADK NY ++HE+L+KL+KVGGI  
Sbjct: 117 GVDHKINFIQSDALSALDQLLN-NDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIA 175

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRIF 187
           +DNTLW G VA  E++VP+H R + R+A+L+ N+ LA DPRV++S +++GDG+T+CRR+ 
Sbjct: 176 FDNTLWFGFVAQEEDEVPEHMR-AYRKALLEFNKLLASDPRVEISQISIGDGVTLCRRLV 234

Length = 234

>gnl|CDD|201880 pfam01596, Methyltransf_3, O-methyltransferase

 Score =  263 bits (673), Expect = 1e-90
 Identities = 100/179 (55%), Positives = 134/179 (74%), Gaps = 7/179 (3%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQ ++MLL+L+ AK+T+EIGVFTGYSLL TAL +PEDG+ITA D++ E YEIGLP I+KA
Sbjct: 33  GQFLSMLLKLIGAKRTLEIGVFTGYSLLATALALPEDGKITACDIDPEAYEIGLPFIQKA 92

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GV  KI+F   +AL  L++L+K  +  G FD+ FVDADK NY NY+ERL++L+KVGG+  
Sbjct: 93  GVADKISFRLGDALPTLEELVK-DKPLGEFDFIFVDADKSNYPNYYERLLELVKVGGLIA 151

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
            DNTLW G VA P+++VP          + +LN+ LA D RV++S + +GDGIT+CRRI
Sbjct: 152 IDNTLWFGKVAEPDDEVPKT------VRVRELNKLLASDERVEISMLPVGDGITLCRRI 204

Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production. Length = 204

>gnl|CDD|166230 PLN02589, PLN02589, caffeoyl-CoA O-methyltransferase

 Score =  233 bits (595), Expect = 3e-78
 Identities = 103/179 (57%), Positives = 139/179 (77%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQ + MLL+L+NAK T+EIGV+TGYSLL TAL +PEDG+I A+D+NRE YE+GLP+I+KA
Sbjct: 68  GQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA 127

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GV HKI+F E  AL VLDQ+++  +  G+FD+ FVDADKDNY NYH+RL+ L+KVGG+  
Sbjct: 128 GVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIG 187

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
           YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGIT+CRRI
Sbjct: 188 YDNTLWNGSVVAPPDAPMRKYVRYYRDFVLELNKALAADPRIEICMLPVGDGITLCRRI 246

Length = 247

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score =  146 bits (370), Expect = 2e-44
 Identities = 71/179 (39%), Positives = 103/179 (57%), Gaps = 10/179 (5%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           G L+ +L RL   K+ +EIG   GYS L  AL +P+DG++T I+ + E  EI    + +A
Sbjct: 48  GALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA 107

Query: 68  GVDHKINFIES-EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 126
           GVD +I  +   +AL VL +LL     +GSFD  F+DADK +Y  Y ER + LL+ GG+ 
Sbjct: 108 GVDDRIELLLGGDALDVLSRLL-----DGSFDLVFIDADKADYPEYLERALPLLRPGGLI 162

Query: 127 VYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 185
           V DN L+GG VA P  +       +  + + D N  L +DPR     + LGDG+ + R+
Sbjct: 163 VADNVLFGGRVADPSIRDAR----TQVRGVRDFNDYLLEDPRYDTVLLPLGDGLLLSRK 217

Length = 219

>gnl|CDD|178094 PLN02476, PLN02476, O-methyltransferase

 Score =  145 bits (366), Expect = 3e-43
 Identities = 75/179 (41%), Positives = 111/179 (62%), Gaps = 7/179 (3%)

Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
             QL+AML++++ A++ IE+GV+TGYS L  AL +PE G + A + +  + E+     + 
Sbjct: 106 QAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYEL 165

Query: 67  AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 126
           AGV HK+N     A   L  +++  E   S+D+AFVDADK  Y +Y E L++L++VGG+ 
Sbjct: 166 AGVSHKVNVKHGLAAESLKSMIQNGE-GSSYDFAFVDADKRMYQDYFELLLQLVRVGGVI 224

Query: 127 VYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 185
           V DN LW G VA P   V D    +   +I + N+ L DD RV +S V +GDG+TICR+
Sbjct: 225 VMDNVLWHGRVADP--LVND----AKTISIRNFNKKLMDDKRVSISMVPIGDGMTICRK 277

Length = 278

>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 11/112 (9%)

Query: 24  IEIGVFTGYSLLLTALTIPE--DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL 81
           +EIGV++G S L  A  + +   G++ +ID            ++KAG+  ++  +  ++L
Sbjct: 1   VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPGAEAG--ANLRKAGLADRVRLLRGDSL 58

Query: 82  SVLDQLLKYSENEGSFDYAFVDADKDNYCNYH--ERLMKLLKVGGIAVYDNT 131
             L +L      +GS D  F+D D          E  + LL  GGI V+ + 
Sbjct: 59  EALARL-----PDGSIDLLFIDGDHTYEAVLADLELWLPLLAPGGIIVFHDI 105

This family appears to be a methyltransferase domain. Length = 105

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 13/104 (12%)

Query: 24  IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVDHKINFIESEAL 81
           ++IG  TG   +  A   P   ++T +D++ E  E+     + A   +  +I F++ +A 
Sbjct: 6   LDIGCGTGSLAIELARLFP-GARVTGVDLSPEMLEL---ARENAKLALGPRITFVQGDAP 61

Query: 82  SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 125
             LD L         FD  F+     +     + L  LLK GG 
Sbjct: 62  DALDLL-------EGFDAVFIGGGGGDLLELLDALASLLKPGGR 98

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 37.9 bits (88), Expect = 0.001
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 15  LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN 74
           LRL      ++IG  TG   +  +L + E G++ A+D + +   +     +K GV + I 
Sbjct: 36  LRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIV 95

Query: 75  FIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129
            I+ EA  +L  +         FD  F+    +          +++K GG  V D
Sbjct: 96  LIKGEAPEILFTI------NEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVID 144

Length = 198

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 37.0 bits (86), Expect = 0.001
 Identities = 24/111 (21%), Positives = 49/111 (44%), Gaps = 8/111 (7%)

Query: 20  AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE 79
             K +++G  TGY   + A  +    ++  ID++ E  E      KK G +  + FI+ +
Sbjct: 4   GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYE-NVEFIQGD 62

Query: 80  ALSVLDQLLKYSENEGSFDYAFVDADKDNYCN---YHERLMKLLKVGGIAV 127
              +    L     + SFD    +   ++  +     E ++++LK GG+ +
Sbjct: 63  IEELPQLQL----EDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLI 109

This family appears to be have methyltransferase activity. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	100.0
PLN02589	247	caffeoyl-CoA O-methyltransferase	100.0
PLN02476	278	O-methyltransferase	100.0
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	100.0
COG4122	219	Predicted O-methyltransferase [General function pr	100.0
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	100.0
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.8
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.78
PRK04457	262	spermidine synthase; Provisional	99.77
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.74
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.74
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.74
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.74
PLN03075	296	nicotianamine synthase; Provisional	99.73
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.73
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.72
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.72
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.72
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.72
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.71
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.7
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.7
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.7
PRK07402	196	precorrin-6B methylase; Provisional	99.7
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.69
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.68
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.68
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.68
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.67
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.67
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.67
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.66
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.66
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.66
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.66
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.65
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.65
PRK00811	283	spermidine synthase; Provisional	99.65
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.65
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.64
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.64
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.64
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.63
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	99.63
COG4123	248	Predicted O-methyltransferase [General function pr	99.63
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.63
PRK01581	374	speE spermidine synthase; Validated	99.63
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.62
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.62
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.62
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.61
PLN02366	308	spermidine synthase	99.61
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.61
PLN02244	340	tocopherol O-methyltransferase	99.61
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.61
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.6
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.6
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.59
PRK11207	197	tellurite resistance protein TehB; Provisional	99.59
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.59
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.59
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.58
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.58
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.57
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	99.57
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.56
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.56
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.55
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.55
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.55
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.55
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.55
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.54
PRK04266	226	fibrillarin; Provisional	99.54
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.54
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.54
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.54
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.53
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.53
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.53
PLN02823	336	spermine synthase	99.53
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.53
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.53
PRK12335	287	tellurite resistance protein TehB; Provisional	99.52
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.52
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.51
PRK08317	241	hypothetical protein; Provisional	99.51
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.51
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.5
PRK14968	188	putative methyltransferase; Provisional	99.5
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.5
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.5
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.49
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.49
PRK06922	677	hypothetical protein; Provisional	99.49
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.49
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.48
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.48
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.48
PLN02336	475	phosphoethanolamine N-methyltransferase	99.47
PRK14967	223	putative methyltransferase; Provisional	99.47
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	99.47
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.47
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.47
COG2890	280	HemK Methylase of polypeptide chain release factor	99.47
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.45
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.45
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.45
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.45
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.45
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.45
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.44
PRK03612	521	spermidine synthase; Provisional	99.43
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.43
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.43
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.43
PLN02490	340	MPBQ/MSBQ methyltransferase	99.42
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	99.42
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.42
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.42
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.41
PTZ00146	293	fibrillarin; Provisional	99.4
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.4
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.4
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.4
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.39
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.39
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.38
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.38
TIGR03438	301	probable methyltransferase. This model represents	99.37
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.37
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.36
PLN02336	475	phosphoethanolamine N-methyltransferase	99.36
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.35
KOG2904	328	consensus Predicted methyltransferase [General fun	99.34
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.34
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.33
KOG4300	252	consensus Predicted methyltransferase [General fun	99.33
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.32
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.32
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.31
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.31
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.3
TIGR00438	188	rrmJ cell division protein FtsJ.	99.29
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.28
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	99.28
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	99.28
PRK00536	262	speE spermidine synthase; Provisional	99.28
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.27
PRK06202	232	hypothetical protein; Provisional	99.25
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.25
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.25
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	99.25
PRK05785	226	hypothetical protein; Provisional	99.24
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.24
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.23
COG2521	287	Predicted archaeal methyltransferase [General func	99.23
KOG1271	227	consensus Methyltransferases [General function pre	99.22
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	99.22
PLN02672	1082	methionine S-methyltransferase	99.22
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.21
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	99.19
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.19
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.18
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.17
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	99.17
COG2520	341	Predicted methyltransferase [General function pred	99.16
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.15
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.15
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.14
KOG2899	288	consensus Predicted methyltransferase [General fun	99.14
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.13
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.12
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.12
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	99.12
PHA03412	241	putative methyltransferase; Provisional	99.12
PHA03411	279	putative methyltransferase; Provisional	99.1
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	99.09
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.08
KOG2361	264	consensus Predicted methyltransferase [General fun	99.08
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.07
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.07
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.06
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.05
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	99.04
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.04
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	99.03
KOG3010	261	consensus Methyltransferase [General function pred	99.03
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.01
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.98
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.98
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.97
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.95
KOG2730	263	consensus Methylase [General function prediction o	98.94
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.92
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.9
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.88
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.87
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.85
PRK04148	134	hypothetical protein; Provisional	98.82
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.82
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.82
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	98.81
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.79
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	98.79
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.79
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.78
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.7
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.69
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.69
PRK10742	250	putative methyltransferase; Provisional	98.67
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.65
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.63
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.63
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.57
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.55
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.54
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	98.54
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.51
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.49
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	98.47
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.47
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.47
COG2384	226	Predicted SAM-dependent methyltransferase [General	98.47
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.44
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.44
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.43
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.41
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.41
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.4
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.4
PF13679	141	Methyltransf_32: Methyltransferase domain	98.38
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.37
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	98.29
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.28
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.27
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.24
COG4076	252	Predicted RNA methylase [General function predicti	98.23
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.19
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	98.17
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.15
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	98.13
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.12
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	98.06
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	98.06
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.99
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.99
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.98
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.95
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.92
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.92
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.9
KOG3115	249	consensus Methyltransferase-like protein [General	97.89
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	97.86
COG3897	218	Predicted methyltransferase [General function pred	97.85
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	97.84
KOG2940	325	consensus Predicted methyltransferase [General fun	97.79
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.76
KOG2352	482	consensus Predicted spermine/spermidine synthase [	97.75
PHA01634	156	hypothetical protein	97.71
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.68
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.67
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.66
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.6
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.59
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.57
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.5
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.38
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	97.36
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	97.28
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.25
COG4798	238	Predicted methyltransferase [General function pred	97.23
COG0286	489	HsdM Type I restriction-modification system methyl	97.22
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	97.15
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.12
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	97.06
KOG1227	351	consensus Putative methyltransferase [General func	97.04
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	97.03
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.02
COG4301	321	Uncharacterized conserved protein [Function unknow	96.99
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.93
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.9
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.83
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	96.7
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.69
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	96.68
PRK11524	284	putative methyltransferase; Provisional	96.64
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	96.64
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	96.57
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.56
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	96.46
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	96.4
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.34
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.28
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.24
PRK13699	227	putative methylase; Provisional	96.2
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.19
COG2961	279	ComJ Protein involved in catabolism of external DN	96.18
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.14
PRK13699	227	putative methylase; Provisional	96.11
PRK11524	284	putative methyltransferase; Provisional	96.07
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	96.0
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	95.99
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	95.97
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	95.88
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.86
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	95.79
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.77
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.66
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	95.65
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	95.65
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	95.56
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	95.54
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	95.53
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	95.45
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.41
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	95.39
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	95.29
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	95.29
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	95.15
KOG2078	495	consensus tRNA modification enzyme [RNA processing	95.12
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	95.01
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.95
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	94.95
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	94.88
COG1565	370	Uncharacterized conserved protein [Function unknow	94.86
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	94.82
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.8
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	94.71
KOG2360	413	consensus Proliferation-associated nucleolar prote	94.66
COG3315	297	O-Methyltransferase involved in polyketide biosynt	94.6
COG1568	354	Predicted methyltransferases [General function pre	94.55
PLN02740	381	Alcohol dehydrogenase-like	94.51
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	94.51
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	94.46
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	94.43
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	94.16
PLN02827	378	Alcohol dehydrogenase-like	94.16
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.1
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.03
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	93.93
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	93.87
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	93.86
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	93.84
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	93.73
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	93.7
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	93.65
KOG1331	293	consensus Predicted methyltransferase [General fun	93.63
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.62
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.54
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.5
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	93.41
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	93.36
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	93.34
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	93.27
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	93.22
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.18
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	93.12
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	92.96
PTZ00357	1072	methyltransferase; Provisional	92.92
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	92.84
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	92.71
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	92.67
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	92.64
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	92.61
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	92.54
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	92.47
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	92.46
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	92.43
KOG0780	483	consensus Signal recognition particle, subunit Srp	92.42
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	92.41
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	92.39
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	92.38
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	92.33
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	92.31
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	92.09
PRK08114	395	cystathionine beta-lyase; Provisional	92.01
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	91.95
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	91.85
PLN02586	360	probable cinnamyl alcohol dehydrogenase	91.84
KOG2352	482	consensus Predicted spermine/spermidine synthase [	91.72
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	91.71
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	91.52
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	91.43
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	91.36
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	91.34
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	91.29
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	91.28
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	91.25
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	91.22
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	91.22
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	91.19
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	91.14
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	91.11
PRK07417	279	arogenate dehydrogenase; Reviewed	91.05
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	91.04
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	91.01
KOG2912	419	consensus Predicted DNA methylase [Function unknow	91.01
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	90.98
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	90.95
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	90.82
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	90.78
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	90.75
PF08351	92	DUF1726: Domain of unknown function (DUF1726); Int	90.75
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	90.71
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	90.7
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	90.65
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	90.39
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	90.27
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	90.27
PLN02494	477	adenosylhomocysteinase	90.23
TIGR00497	501	hsdM type I restriction system adenine methylase (	90.19
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	90.18
PLN02256	304	arogenate dehydrogenase	90.17
TIGR00853	95	pts-lac PTS system, lactose/cellobiose family IIB	90.13
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	89.94
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	89.83
KOG3924	419	consensus Putative protein methyltransferase invol	89.72
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	89.69
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	89.68
PRK05939	397	hypothetical protein; Provisional	89.67
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	89.52
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	89.51
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	89.5
PRK03659	601	glutathione-regulated potassium-efflux system prot	89.43
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	89.41
PRK10083	339	putative oxidoreductase; Provisional	89.34
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	89.32
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	89.19
PTZ00354	334	alcohol dehydrogenase; Provisional	89.12
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	89.11
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	89.1
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	89.1
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	89.07
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	89.06
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	88.97
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	88.92
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	88.89
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	88.88
PRK05967	395	cystathionine beta-lyase; Provisional	88.82
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	88.78
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	88.66
PRK08328	231	hypothetical protein; Provisional	88.65
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	88.65
PRK08306	296	dipicolinate synthase subunit A; Reviewed	88.64
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	88.58
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	88.53
PRK08574	385	cystathionine gamma-synthase; Provisional	88.51
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	88.39
PRK10669	558	putative cation:proton antiport protein; Provision	88.39
PRK08324	681	short chain dehydrogenase; Validated	88.33
PRK09496	453	trkA potassium transporter peripheral membrane com	88.23
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	88.08
PLN02514	357	cinnamyl-alcohol dehydrogenase	88.08
PRK09496	453	trkA potassium transporter peripheral membrane com	87.98
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	87.86
PRK14974	336	cell division protein FtsY; Provisional	87.83
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.78
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.75
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	87.65
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	87.49
PRK09028	394	cystathionine beta-lyase; Provisional	87.47
PRK08655	437	prephenate dehydrogenase; Provisional	87.43
PRK07671	377	cystathionine beta-lyase; Provisional	87.37
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	87.35
PRK08064	390	cystathionine beta-lyase; Provisional	87.34
PRK07582	366	cystathionine gamma-lyase; Validated	87.26
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	87.01
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	87.01
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	86.93
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	86.92
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	86.91
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	86.82
COG1255	129	Uncharacterized protein conserved in archaea [Func	86.79
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	86.7
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	86.67
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	86.66
PRK03562	621	glutathione-regulated potassium-efflux system prot	86.48
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	86.44
PRK07877	722	hypothetical protein; Provisional	86.43
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	86.42
PF03269	177	DUF268: Caenorhabditis protein of unknown function	86.26
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	86.25
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	86.21
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	86.11
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	86.03
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	85.96
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	85.91
PRK07411	390	hypothetical protein; Validated	85.78
PF12242	78	Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2	85.75
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	85.63
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	85.6
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	85.59
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	85.56
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	85.47
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	85.24
PRK06940	275	short chain dehydrogenase; Provisional	85.08
PRK07680	273	late competence protein ComER; Validated	85.08
PRK06153	393	hypothetical protein; Provisional	85.07
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	85.03

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=100.00  E-value=1.9e-40  Score=245.11  Aligned_cols=179  Identities=44%  Similarity=0.766  Sum_probs=160.7

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |++++.++++|..+++..+|++||||||++|++++++|..+|++++|+++|.+++.++.|+++++.+++.++++++.+|+
T Consensus        27 ~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda  106 (205)
T PF01596_consen   27 MSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDA  106 (205)
T ss_dssp             GSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-H
T ss_pred             CccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEecc
Confidence            67899999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHH
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  160 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+... ...++||+||+|+++.+|..+++.+.++|+|||+|+++|++|+|.+..+....      +....+++|+
T Consensus       107 ~~~l~~l~~~-~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN~l~~G~V~~~~~~~------~~~~~ir~f~  179 (205)
T PF01596_consen  107 LEVLPELAND-GEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIADNVLWRGSVADPDDED------PKTVAIREFN  179 (205)
T ss_dssp             HHHHHHHHHT-TTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEETTTGGGGGGSTTGGS------HHHHHHHHHH
T ss_pred             HhhHHHHHhc-cCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEEccccccceecCccchh------hhHHHHHHHH
Confidence            9999887543 11358999999999999999999999999999999999999999999883321      1455699999


Q ss_pred             HHhhcCCCeEEEeeecCCceEEEEEc
Q 029803          161 RSLADDPRVQLSHVALGDGITICRRI  186 (187)
Q Consensus       161 ~~l~~~~~~~~~~lp~~~G~~~~~~~  186 (187)
                      +++.++|+++++++|+++|+++++||
T Consensus       180 ~~i~~d~~~~~~llpigdGl~l~~K~  205 (205)
T PF01596_consen  180 EYIANDPRFETVLLPIGDGLTLARKR  205 (205)
T ss_dssp             HHHHH-TTEEEEEECSTTEEEEEEE-
T ss_pred             HHHHhCCCeeEEEEEeCCeeEEEEEC
Confidence            99999999999999999999999996

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=4.1e-38  Score=238.32  Aligned_cols=185  Identities=57%  Similarity=0.991  Sum_probs=164.2

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |++++.++++|..+++..++++|||||+++|++++++|..++++++++++|.+++.++.|+++++.+|+.++++++.|++
T Consensus        61 ~~~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a  140 (247)
T PLN02589         61 MTTSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPA  140 (247)
T ss_pred             CccCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccH
Confidence            67789999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCC-cccchHHHHHHH
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDH-FRGSSRQAILDL  159 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  159 (187)
                      .+.++.+...+...++||+||+|+++..|..+++.+.++|+|||+|+++|++|+|.+.++.....+. .+. ....+++|
T Consensus       141 ~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DNvl~~G~v~~~~~~~~~~~~~~-~~~~ir~f  219 (247)
T PLN02589        141 LPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPMRKYVRY-YRDFVLEL  219 (247)
T ss_pred             HHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEcCCCCCCcccCccccchhhhHHH-HHHHHHHH
Confidence            9999887532111368999999999999999999999999999999999999999988774322111 111 23468999


Q ss_pred             HHHhhcCCCeEEEeeecCCceEEEEEc
Q 029803          160 NRSLADDPRVQLSHVALGDGITICRRI  186 (187)
Q Consensus       160 ~~~l~~~~~~~~~~lp~~~G~~~~~~~  186 (187)
                      ++.+.++++++++++|+|+|+++++|+
T Consensus       220 n~~v~~d~~~~~~llPigDGl~l~~k~  246 (247)
T PLN02589        220 NKALAADPRIEICMLPVGDGITLCRRI  246 (247)
T ss_pred             HHHHHhCCCEEEEEEEeCCccEEEEEe
Confidence            999999999999999999999999997

>PLN02476 O-methyltransferase

Probab=100.00  E-value=2.3e-37  Score=236.87  Aligned_cols=179  Identities=41%  Similarity=0.690  Sum_probs=163.2

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |++++.++++|..+++..++++||||||++|++++++|..++++++++++|.+++.++.|+++++.+|+.++++++.+|+
T Consensus       100 ~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA  179 (278)
T PLN02476        100 MQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLA  179 (278)
T ss_pred             cccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            67899999999999999999999999999999999999999878999999999999999999999999998999999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHH
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  160 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+..+ ...++||+||+|+++.+|..+++.+.++|+|||+|+++|++|+|.+.++.... .     .+..+++|+
T Consensus       180 ~e~L~~l~~~-~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~G~V~d~~~~d-~-----~t~~ir~fn  252 (278)
T PLN02476        180 AESLKSMIQN-GEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDNVLWHGRVADPLVND-A-----KTISIRNFN  252 (278)
T ss_pred             HHHHHHHHhc-ccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEecCccCCcccCcccCC-H-----HHHHHHHHH
Confidence            9998876322 11368999999999999999999999999999999999999999998774322 1     456799999


Q ss_pred             HHhhcCCCeEEEeeecCCceEEEEEc
Q 029803          161 RSLADDPRVQLSHVALGDGITICRRI  186 (187)
Q Consensus       161 ~~l~~~~~~~~~~lp~~~G~~~~~~~  186 (187)
                      +++.++++++++++|+|+|+++++|+
T Consensus       253 ~~v~~d~~~~~~llPigDGl~i~~K~  278 (278)
T PLN02476        253 KKLMDDKRVSISMVPIGDGMTICRKR  278 (278)
T ss_pred             HHHhhCCCEEEEEEEeCCeeEEEEEC
Confidence            99999999999999999999999986

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=100.00  E-value=4.1e-37  Score=232.79  Aligned_cols=185  Identities=59%  Similarity=1.031  Sum_probs=166.9

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |++.+.++++|..+++..++++|||||||+|+++++++..++++++++++|.++++++.|+++++.+++.++++++.+|+
T Consensus        50 ~~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda  129 (234)
T PLN02781         50 MEVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA  129 (234)
T ss_pred             cccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH
Confidence            67899999999999999999999999999999999999998778999999999999999999999999988999999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHH
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  160 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+... ...++||+||+|+.+..|..+++.+.++|+|||+|+++|++|+|.+.++.....++.+. ....+++|+
T Consensus       130 ~~~L~~l~~~-~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn~l~~G~v~~~~~~~~~~~~~-~~~~ir~~~  207 (234)
T PLN02781        130 LSALDQLLNN-DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDNTLWFGFVAQEEDEVPEHMRA-YRKALLEFN  207 (234)
T ss_pred             HHHHHHHHhC-CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEcCCcCCeecCcccccchhhhH-HHHHHHHHH
Confidence            9988776321 11368999999999999999999999999999999999999999999886544444444 667899999


Q ss_pred             HHhhcCCCeEEEeeecCCceEEEEEcC
Q 029803          161 RSLADDPRVQLSHVALGDGITICRRIF  187 (187)
Q Consensus       161 ~~l~~~~~~~~~~lp~~~G~~~~~~~~  187 (187)
                      +.+.++|+++++++|+|+|+++++|+.
T Consensus       208 ~~i~~~~~~~~~~lp~gdG~~i~~k~~  234 (234)
T PLN02781        208 KLLASDPRVEISQISIGDGVTLCRRLV  234 (234)
T ss_pred             HHHhhCCCeEEEEEEeCCccEEEEEeC
Confidence            999999999999999999999999874

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=100.00  E-value=9.6e-37  Score=225.30  Aligned_cols=174  Identities=41%  Similarity=0.676  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-cchHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSV   83 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~   83 (187)
                      ++++++|..+++..++++|||||++.|++++++|..++++++++++|.+++.++.|++++++.++.++++++. +|+.+.
T Consensus        45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~  124 (219)
T COG4122          45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV  124 (219)
T ss_pred             hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence            8999999999999999999999999999999999999988999999999999999999999999999899999 699998


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHHh
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSL  163 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  163 (187)
                      +...     ..++||+||+|+++.+|+.+++.++++|+|||+++++|++++|.+..+..   +..++ ....+++|++++
T Consensus       125 l~~~-----~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNvl~~G~v~~~~~---~~~~~-~~~~~~~~~~~~  195 (219)
T COG4122         125 LSRL-----LDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNVLFGGRVADPSI---RDART-QVRGVRDFNDYL  195 (219)
T ss_pred             HHhc-----cCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeecccCCccCCccc---hhHHH-HHHHHHHHHHHH
Confidence            7762     25899999999999999999999999999999999999999998887743   23333 556699999999


Q ss_pred             hcCCCeEEEeeecCCceEEEEEcC
Q 029803          164 ADDPRVQLSHVALGDGITICRRIF  187 (187)
Q Consensus       164 ~~~~~~~~~~lp~~~G~~~~~~~~  187 (187)
                      .++|+++++++|+|+|+++++|++
T Consensus       196 ~~~~~~~t~~lP~gDGl~v~~k~~  219 (219)
T COG4122         196 LEDPRYDTVLLPLGDGLLLSRKRG  219 (219)
T ss_pred             hhCcCceeEEEecCCceEEEeecC
Confidence            999999999999999999999975

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.4e-34  Score=211.57  Aligned_cols=183  Identities=57%  Similarity=0.967  Sum_probs=166.0

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |.+.+.+++|++++++..+|+++||||+.||++++.+|..+|++++|+++|++++.++.+.+..+..+...+++++++++
T Consensus        55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a  134 (237)
T KOG1663|consen   55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA  134 (237)
T ss_pred             eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHH
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  160 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++++.+. .+.+.||++|+|+++.+|..+++++.+++++||+|+++|++|+|.+.++....+.+.+. .+.+ -.++
T Consensus       135 ~esLd~l~~~-~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~DNvl~~G~v~~p~~~~~~~~~~-~r~~-~~~n  211 (237)
T KOG1663|consen  135 LESLDELLAD-GESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVVDNVLWPGVVADPDVNTPVRGRS-IREA-LNLN  211 (237)
T ss_pred             hhhHHHHHhc-CCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEEeccccCCcccCcccCCCcchhh-hhhh-hhhh
Confidence            9999988655 45779999999999999999999999999999999999999999777775554444443 2222 3999


Q ss_pred             HHhhcCCCeEEEeeecCCceEEEEEc
Q 029803          161 RSLADDPRVQLSHVALGDGITICRRI  186 (187)
Q Consensus       161 ~~l~~~~~~~~~~lp~~~G~~~~~~~  186 (187)
                      +.|..||+++...+|+|+|+++++|+
T Consensus       212 ~~l~~D~rV~~s~~~igdG~~i~~k~  237 (237)
T KOG1663|consen  212 KKLARDPRVYISLLPIGDGITICRKR  237 (237)
T ss_pred             hHhccCcceeeEeeeccCceeeeccC
Confidence            99999999999999999999999985

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.80  E-value=4.3e-19  Score=119.63  Aligned_cols=104  Identities=22%  Similarity=0.374  Sum_probs=86.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      |+.+|||||||+|..+.++++..+ +.+++++|++|++++.+++++...+...+++++++|+ ......      .++||
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~------~~~~D   72 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDPDF------LEPFD   72 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGTTT------SSCEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCccc------CCCCC
Confidence            578999999999999999999555 8899999999999999999997778888999999999 322221      46899


Q ss_pred             EEEEeC-CCc------ccHHHHHHHHhccCCCeEEEEeC
Q 029803           99 YAFVDA-DKD------NYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        99 ~i~~d~-~~~------~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|++.. ...      ....+++.+.+.|+|||+++++.
T Consensus        73 ~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   73 LVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             EEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            999987 322      23456999999999999999863

...

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.78  E-value=1.4e-17  Score=119.52  Aligned_cols=117  Identities=26%  Similarity=0.265  Sum_probs=101.1

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      ++..+.-..++..++.+++|||||+|..++.++...| .++++++|.++++++..++|.+++++ ++++++.+++.+.++
T Consensus        21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p-~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~   98 (187)
T COG2242          21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGP-SGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALP   98 (187)
T ss_pred             HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhc
Confidence            3344444445677889999999999999999995544 89999999999999999999999995 479999999999877


Q ss_pred             HHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           86 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .+       .++|.||+.+. ......++.++..|+|||.||++-+.
T Consensus        99 ~~-------~~~daiFIGGg-~~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242          99 DL-------PSPDAIFIGGG-GNIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             CC-------CCCCEEEECCC-CCHHHHHHHHHHHcCcCCeEEEEeec
Confidence            53       48999999988 88999999999999999999997655

>PRK04457 spermidine synthase; Provisional

Probab=99.77  E-value=4.4e-17  Score=125.47  Aligned_cols=117  Identities=18%  Similarity=0.222  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      .+..++..+....++++|||||||+|.++.+++...| ..+++++|++|++++.|++++...+..++++++.+|+.++++
T Consensus        53 y~~~m~~~l~~~~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~  131 (262)
T PRK04457         53 YTRAMMGFLLFNPRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIA  131 (262)
T ss_pred             HHHHHHHHHhcCCCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHH
Confidence            3444555555566789999999999999999998886 889999999999999999998765545689999999998876


Q ss_pred             HHhhcccCCCceeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEe
Q 029803           86 QLLKYSENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..      .++||+|++|....       ...++++.+.+.|+|||+++++
T Consensus       132 ~~------~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        132 VH------RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             hC------CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            53      46899999996322       1368999999999999999985

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.74  E-value=5.4e-17  Score=111.05  Aligned_cols=114  Identities=24%  Similarity=0.291  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      ...+...+...+..+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++..+.. +++++.+|+....+..
T Consensus         8 ~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~   85 (124)
T TIGR02469         8 RALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALEDS   85 (124)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccChhh
Confidence            33333444455678999999999999999999876 589999999999999999999887765 5889988876433322


Q ss_pred             hhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           88 LKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                            .++||.|+++........+++.+.+.|+|||.+++.
T Consensus        86 ------~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        86 ------LPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             ------cCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEE
Confidence                  368999999876667778999999999999999985

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.74  E-value=1.4e-16  Score=117.10  Aligned_cols=112  Identities=28%  Similarity=0.304  Sum_probs=92.4

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      .++-..+...++.+|||+|||+|..+..+++..+ +.+++++|+++++++.+++++...++. +++++.+|+...   + 
T Consensus        21 ~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~~~---~-   94 (187)
T PRK08287         21 ALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAPIE---L-   94 (187)
T ss_pred             HHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCchhh---c-
Confidence            3333344556788999999999999999998876 789999999999999999999888765 589999987432   1 


Q ss_pred             hcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           89 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                           .++||+|++++....+..+++.+.+.|+|||+++++..
T Consensus        95 -----~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287         95 -----PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             -----CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEEe
Confidence                 35899999987666678889999999999999998644

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.74  E-value=7.8e-17  Score=119.42  Aligned_cols=110  Identities=25%  Similarity=0.356  Sum_probs=94.3

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...++.+|||+|||+|..++.++...++.++|+++|+++++++.++++++.+++.++++++.+|+.+.++..      .+
T Consensus        37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~------~~  110 (198)
T PRK00377         37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI------NE  110 (198)
T ss_pred             CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc------CC
Confidence            456778999999999999999988765568999999999999999999998886667999999998765543      36


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +||.||+......+..+++.+.+.|+|||.++++..
T Consensus       111 ~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (198)
T PRK00377        111 KFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAI  146 (198)
T ss_pred             CCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEee
Confidence            899999977666778899999999999999998543

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.74  E-value=7.8e-17  Score=121.17  Aligned_cols=116  Identities=21%  Similarity=0.339  Sum_probs=98.6

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      +.+.......++.+|||+|||||..+..+++..+ .++|+++|+++.|++.+++++...+..+ ++++++|+.+. | + 
T Consensus        41 ~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L-P-f-  115 (238)
T COG2226          41 RALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL-P-F-  115 (238)
T ss_pred             HHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC-C-C-
Confidence            3333444444789999999999999999999988 8999999999999999999999888776 99999999774 2 2 


Q ss_pred             hcccCCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           89 KYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                          ++++||++.+..   +..++...++++.|.|||||.+++.+...
T Consensus       116 ----~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~  159 (238)
T COG2226         116 ----PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSK  159 (238)
T ss_pred             ----CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence                478999999885   45678899999999999999998876664

>PLN03075 nicotianamine synthase; Provisional

Probab=99.73  E-value=5.4e-17  Score=125.48  Aligned_cols=118  Identities=14%  Similarity=0.217  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh-cCCCCcEEEEEcchHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALS   82 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~   82 (187)
                      +.++.+|..+... +|++|+|||||.| ++++.++....++++++++|.++++++.|+++++. .++.++++|..+|+.+
T Consensus       110 ~lE~~~L~~~~~~-~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~  188 (296)
T PLN03075        110 KLEFDLLSQHVNG-VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMD  188 (296)
T ss_pred             HHHHHHHHHhhcC-CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhh
Confidence            4556777776665 8999999999955 66666665554589999999999999999999964 8888899999999987


Q ss_pred             HHHHHhhcccCCCceeEEEEeC----CCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDA----DKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~----~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+.       .+.||+||+++    +++.+...++++.+.|+|||++++-.
T Consensus       189 ~~~~-------l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        189 VTES-------LKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             cccc-------cCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence            4322       36899999985    35788899999999999999999854

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.73  E-value=6.4e-17  Score=120.47  Aligned_cols=107  Identities=21%  Similarity=0.315  Sum_probs=88.0

Q ss_pred             HHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      ..+...++.+|||||||+|+.+..++..+++.++|+++|+++++++.+++++...++.++++++++|+.+.++.      
T Consensus        66 ~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~------  139 (205)
T PRK13944         66 ELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEK------  139 (205)
T ss_pred             HhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCcc------
Confidence            33345567899999999999999999887656899999999999999999999888877799999998764332      


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       ..+||.|+++......   .+.+.+.|+|||.+++.
T Consensus       140 -~~~fD~Ii~~~~~~~~---~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        140 -HAPFDAIIVTAAASTI---PSALVRQLKDGGVLVIP  172 (205)
T ss_pred             -CCCccEEEEccCcchh---hHHHHHhcCcCcEEEEE
Confidence             3689999998754443   35677899999999885

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.72  E-value=8.5e-17  Score=117.41  Aligned_cols=103  Identities=22%  Similarity=0.322  Sum_probs=87.7

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...++.+|||+|||+|..+..++...+ .++|+++|.++++++.++++++..++. +++++++|+.+..        ..+
T Consensus        39 ~~~~~~~vLDiGcGtG~~s~~la~~~~-~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~--------~~~  108 (181)
T TIGR00138        39 EYLDGKKVIDIGSGAGFPGIPLAIARP-ELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ--------HEE  108 (181)
T ss_pred             HhcCCCeEEEecCCCCccHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc--------ccC
Confidence            344689999999999999999987655 789999999999999999999988875 5999999987741        137


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +||+|++++ ...+..+++.+.++|+|||.+++.
T Consensus       109 ~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~lvi~  141 (181)
T TIGR00138       109 QFDVITSRA-LASLNVLLELTLNLLKVGGYFLAY  141 (181)
T ss_pred             CccEEEehh-hhCHHHHHHHHHHhcCCCCEEEEE
Confidence            899999976 456778889999999999999974

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.72  E-value=1.6e-16  Score=116.26  Aligned_cols=102  Identities=19%  Similarity=0.262  Sum_probs=88.0

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..++.++...+ +++|+++|.++++++.++++++..++.+ ++++++|+.+...        .++
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~~~~--------~~~  112 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEEFGQ--------EEK  112 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhhCCC--------CCC
Confidence            33478999999999999999998765 7899999999999999999999988865 9999999876421        368


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ||+|++.. ...+..+++.+.+.|+|||.+++.
T Consensus       113 fDlV~~~~-~~~~~~~l~~~~~~LkpGG~lv~~  144 (187)
T PRK00107        113 FDVVTSRA-VASLSDLVELCLPLLKPGGRFLAL  144 (187)
T ss_pred             ccEEEEcc-ccCHHHHHHHHHHhcCCCeEEEEE
Confidence            99999975 346778999999999999999985

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.72  E-value=3.6e-17  Score=123.75  Aligned_cols=116  Identities=19%  Similarity=0.261  Sum_probs=84.5

Q ss_pred             HHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   89 (187)
Q Consensus        10 ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   89 (187)
                      .+..+....++.+|||+|||+|..+..+++..++.++|+++|++++|++.|++++...+.. +++++++|+.+. +-   
T Consensus        38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~l-p~---  112 (233)
T PF01209_consen   38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDL-PF---  112 (233)
T ss_dssp             HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB---S---
T ss_pred             HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHh-cC---
Confidence            3444455678899999999999999999998876899999999999999999999987766 799999999764 21   


Q ss_pred             cccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           90 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                         .+++||.|++...   .++....++++.++|||||.+++-+...
T Consensus       113 ---~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~  156 (233)
T PF01209_consen  113 ---PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSK  156 (233)
T ss_dssp             ----TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             ---CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccC
Confidence               2589999998853   4567789999999999999998866543

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.72  E-value=9.6e-17  Score=120.07  Aligned_cols=115  Identities=26%  Similarity=0.357  Sum_probs=92.9

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      .|.....+...+...++.+|||||||+|+.+..++...+++++|+++|+++++++.++++++..+.. +++++++|+...
T Consensus        61 ~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~~~~  139 (212)
T PRK13942         61 AIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDGTLG  139 (212)
T ss_pred             cHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccC
Confidence            4455555555667778899999999999999999988765689999999999999999999988864 699999998654


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+.       ..+||+|++++......   +.+.+.|+|||.+++.
T Consensus       140 ~~~-------~~~fD~I~~~~~~~~~~---~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        140 YEE-------NAPYDRIYVTAAGPDIP---KPLIEQLKDGGIMVIP  175 (212)
T ss_pred             CCc-------CCCcCEEEECCCcccch---HHHHHhhCCCcEEEEE
Confidence            321       47899999987654443   4567789999999884

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.71  E-value=1.6e-16  Score=119.17  Aligned_cols=113  Identities=27%  Similarity=0.346  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      .....+..++...++.+|||||||+|+.+..+++..+++++|+++|+++++++.|+++++..++. +++++++|+.+..+
T Consensus        64 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~~~~  142 (215)
T TIGR00080        64 HMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQGWE  142 (215)
T ss_pred             HHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCcccCCc
Confidence            33344444556778899999999999999999988765678999999999999999999998874 69999999876432


Q ss_pred             HHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           86 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .       ..+||+|++++......   +.+.+.|+|||++++.
T Consensus       143 ~-------~~~fD~Ii~~~~~~~~~---~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       143 P-------LAPYDRIYVTAAGPKIP---EALIDQLKEGGILVMP  176 (215)
T ss_pred             c-------cCCCCEEEEcCCccccc---HHHHHhcCcCcEEEEE
Confidence            2       36899999987654443   4567899999999884

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.70  E-value=3.9e-16  Score=119.49  Aligned_cols=114  Identities=18%  Similarity=0.237  Sum_probs=98.8

Q ss_pred             HHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   89 (187)
Q Consensus        10 ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   89 (187)
                      .+...+++.++++|||||||.|..++++|+.+  +.+|+++++|+++.+.+++.+...|+..++++...|-.++      
T Consensus        63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~------  134 (283)
T COG2230          63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF------  134 (283)
T ss_pred             HHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc------
Confidence            33344457799999999999999999999987  6899999999999999999999999998899999887664      


Q ss_pred             cccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           90 YSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                          .++||.|+.-+     ..+++..+|+.+.+.|+|||.++++.+....
T Consensus       135 ----~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~  181 (283)
T COG2230         135 ----EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD  181 (283)
T ss_pred             ----ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence                36699998764     4677999999999999999999998877544

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.70  E-value=1.8e-16  Score=112.73  Aligned_cols=108  Identities=27%  Similarity=0.387  Sum_probs=89.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..++..+.++.+++++|+++++++.|+++++..+.. +++++++|+.+ ++...     .+.|
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~-l~~~~-----~~~~   74 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED-LPQEL-----EEKF   74 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC-GCGCS-----STTE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc-ccccc-----CCCe
Confidence            46789999999999999999965544899999999999999999999998887 79999999987 43210     2689


Q ss_pred             eEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           98 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        98 D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |+|++...   .......++.+.++|+++|.+++.+..
T Consensus        75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            99999853   344567899999999999999987655

...

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.70  E-value=8.9e-16  Score=126.18  Aligned_cols=162  Identities=22%  Similarity=0.241  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      ....+++..++...++.+|||+|||+|..+..++......++|+++|+++++++.++++++.+++.+ ++++++|+.+..
T Consensus       238 d~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~~  316 (434)
T PRK14901        238 DRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNLL  316 (434)
T ss_pred             CHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhcc
Confidence            3445666666667778999999999999999999887656899999999999999999999999864 999999987653


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCCCccccC
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAV  139 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~  139 (187)
                      ....   ...++||.|++|+..+.                         ....+++++++|||||.|+...+...-    
T Consensus       317 ~~~~---~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~----  389 (434)
T PRK14901        317 ELKP---QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHP----  389 (434)
T ss_pred             cccc---cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCh----
Confidence            2110   01368999999963211                         135688889999999999987655311    


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHhhcCCCeEEE-----eeec---CCceEEEEEcC
Q 029803          140 PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLS-----HVAL---GDGITICRRIF  187 (187)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~lp~---~~G~~~~~~~~  187 (187)
                       .+            ........+..+|+|+..     ++|.   .+|+-+|+.+|
T Consensus       390 -~E------------ne~~v~~~l~~~~~~~~~~~~~~~~P~~~~~dGfF~a~l~k  432 (434)
T PRK14901        390 -AE------------NEAQIEQFLARHPDWKLEPPKQKIWPHRQDGDGFFMAVLRK  432 (434)
T ss_pred             -hh------------HHHHHHHHHHhCCCcEecCCCCccCCCCCCCCcEEEEEEEe
Confidence             11            133334445567887644     3454   38999988765

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.70  E-value=8.8e-16  Score=113.60  Aligned_cols=119  Identities=24%  Similarity=0.249  Sum_probs=95.6

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      .+.+..++...+...++.+|||+|||+|..+..++...+ +++|+++|+++++++.++++++..+.. +++++.+|+.+.
T Consensus        25 ~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~~~~  102 (196)
T PRK07402         25 KREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSAPEC  102 (196)
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECchHHH
Confidence            344555555566666778999999999999999987655 689999999999999999999988874 599999998765


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ++.+      ...+|.++++.. .....+++.+.+.|+|||.+++...
T Consensus       103 ~~~~------~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~li~~~~  143 (196)
T PRK07402        103 LAQL------APAPDRVCIEGG-RPIKEILQAVWQYLKPGGRLVATAS  143 (196)
T ss_pred             HhhC------CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeEEEEEee
Confidence            4433      245788888753 3557889999999999999998744

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=1.6e-16  Score=116.30  Aligned_cols=112  Identities=22%  Similarity=0.276  Sum_probs=93.1

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      .|.....+-.++...++.+|||||||+||.+..+++..   ++|+++|..++..+.|+++++..++.+ +.+.++|...-
T Consensus        57 ~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G  132 (209)
T COG2518          57 APHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKG  132 (209)
T ss_pred             CcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccC
Confidence            34445555566678899999999999999999999874   499999999999999999999999976 99999998765


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++.       ..+||.|++.+.....+..   +.+.|++||.+++-
T Consensus       133 ~~~-------~aPyD~I~Vtaaa~~vP~~---Ll~QL~~gGrlv~P  168 (209)
T COG2518         133 WPE-------EAPYDRIIVTAAAPEVPEA---LLDQLKPGGRLVIP  168 (209)
T ss_pred             CCC-------CCCcCEEEEeeccCCCCHH---HHHhcccCCEEEEE
Confidence            443       4799999999876665544   35789999999984

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.68  E-value=2.6e-15  Score=116.98  Aligned_cols=117  Identities=15%  Similarity=0.272  Sum_probs=92.7

Q ss_pred             cHHHHHHHHHHHH----HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc
Q 029803            4 LTIHGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   79 (187)
Q Consensus         4 ~~~~~~ll~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   79 (187)
                      .+.++.++...+.    ..++.+|||+|||+|..++.++...+ +.+++++|+++.+++.|++|+..+++.++++++++|
T Consensus       102 r~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D  180 (284)
T TIGR03533       102 RSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSD  180 (284)
T ss_pred             CCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc
Confidence            3455666655543    23467999999999999999999876 789999999999999999999998887789999999


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCC----------------------------cccHHHHHHHHhccCCCeEEEEe
Q 029803           80 ALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~D~i~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+.++        .++||+|++++..                            ..+..+++.+.+.|+|||.++++
T Consensus       181 ~~~~~~--------~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e  250 (284)
T TIGR03533       181 LFAALP--------GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVE  250 (284)
T ss_pred             hhhccC--------CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            865432        3589999987421                            01245678888999999999985

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.68  E-value=2.1e-15  Score=109.12  Aligned_cols=110  Identities=23%  Similarity=0.393  Sum_probs=89.3

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      ++|...+...+..+|||+|||+|..++.++...+ ..+|+++|+++.+++.++++++.+++.+ ++++..|..+.++   
T Consensus        21 ~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~---   95 (170)
T PF05175_consen   21 RLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALP---   95 (170)
T ss_dssp             HHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCC---
T ss_pred             HHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccc---
Confidence            3455555555889999999999999999999876 6789999999999999999999999877 9999999876432   


Q ss_pred             hcccCCCceeEEEEeCCC----c----ccHHHHHHHHhccCCCeEEEE
Q 029803           89 KYSENEGSFDYAFVDADK----D----NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~----~----~~~~~~~~~~~~L~~gG~lv~  128 (187)
                           .++||+|++++..    .    ....+++++.+.|+|||.+++
T Consensus        96 -----~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~l  138 (170)
T PF05175_consen   96 -----DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFL  138 (170)
T ss_dssp             -----TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -----ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEE
Confidence                 3799999998532    1    245688899999999998855

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.68  E-value=1e-15  Score=117.63  Aligned_cols=103  Identities=18%  Similarity=0.220  Sum_probs=86.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..++..   +.+|+++|+++++++.|++++...++..+++++++|+.+..+..      .++|
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~------~~~f  113 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL------ETPV  113 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc------CCCC
Confidence            45679999999999999999985   57999999999999999999998888778999999998753322      4789


Q ss_pred             eEEEEeCC---CcccHHHHHHHHhccCCCeEEEEe
Q 029803           98 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        98 D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++...   ..+....++++.++|+|||++++.
T Consensus       114 D~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~  148 (255)
T PRK11036        114 DLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLM  148 (255)
T ss_pred             CEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEE
Confidence            99998742   245567899999999999999763

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.67  E-value=6.6e-15  Score=120.74  Aligned_cols=123  Identities=21%  Similarity=0.293  Sum_probs=98.8

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      +....+++..++...++.+|||+|||+|..+..++..+..+++|+++|+++++++.++++++..++. ++++.++|+.+.
T Consensus       222 Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l  300 (431)
T PRK14903        222 QGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERL  300 (431)
T ss_pred             ECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhh
Confidence            3444566666777778899999999999999999998765789999999999999999999999886 489999998764


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ....      .++||.|++|+....                         ....++++++.|+|||.+++..+..
T Consensus       301 ~~~~------~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  369 (431)
T PRK14903        301 TEYV------QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV  369 (431)
T ss_pred             hhhh------hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence            3222      368999999863311                         1345788899999999999976653

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.67  E-value=2.8e-15  Score=123.63  Aligned_cols=122  Identities=21%  Similarity=0.257  Sum_probs=98.3

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      +.....++..++...++.+|||+|||+|..+..++..+++.++|+++|+++++++.++++++..++.+ ++++++|+.+.
T Consensus       235 qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~  313 (444)
T PRK14902        235 QDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKV  313 (444)
T ss_pred             EChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccc
Confidence            44556677777777788999999999999999999987547899999999999999999999999865 99999998765


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ...+      .++||+|++|+....                         ...+++.+.++|+|||.++...+.
T Consensus       314 ~~~~------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs  381 (444)
T PRK14902        314 HEKF------AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT  381 (444)
T ss_pred             cchh------cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence            3332      268999999964211                         134688889999999999986544

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.67  E-value=1.3e-15  Score=115.36  Aligned_cols=110  Identities=18%  Similarity=0.391  Sum_probs=90.0

Q ss_pred             HHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      .+...++.+|||+|||+|..+..++...++.++++++|+++++++.+++++...+. .+++++++|+.+. + +     .
T Consensus        40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~-~-~-----~  111 (231)
T TIGR02752        40 RMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL-P-F-----D  111 (231)
T ss_pred             hcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC-C-C-----C
Confidence            33455678999999999999999998876578999999999999999999987776 4699999998653 1 1     2


Q ss_pred             CCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           94 EGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        94 ~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .++||+|++..   +.+.+...++++.++|+|||.+++.+.
T Consensus       112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEEC
Confidence            47899999864   345567889999999999999987554

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.66  E-value=1.1e-15  Score=118.01  Aligned_cols=117  Identities=21%  Similarity=0.319  Sum_probs=88.6

Q ss_pred             HHHHHHHHH---HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            7 HGQLMAMLL---RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         7 ~~~ll~~l~---~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      +...+..++   ...++.+|||||||.|..+.++++..  +++|+++++|++..+.+++.++..++.+++++..+|..+.
T Consensus        47 Q~~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~  124 (273)
T PF02353_consen   47 QERKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL  124 (273)
T ss_dssp             HHHHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence            334444443   47788999999999999999999986  5899999999999999999999999999999999998654


Q ss_pred             HHHHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           84 LDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                                ..+||.|++-.     ..+++..+++.+.++|+|||.++++.+....
T Consensus       125 ----------~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~  171 (273)
T PF02353_consen  125 ----------PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRD  171 (273)
T ss_dssp             ------------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred             ----------CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence                      35899998764     3467789999999999999999998766433

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.66  E-value=1.2e-15  Score=113.28  Aligned_cols=113  Identities=21%  Similarity=0.305  Sum_probs=88.7

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      .+...+..  ++.+|||+|||+|..+..++...+ ..+++++|+++++++.+++++...++ .+++++++|+.+.++...
T Consensus        32 ~~~~~~~~--~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~  107 (202)
T PRK00121         32 DWAELFGN--DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMF  107 (202)
T ss_pred             CHHHHcCC--CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHc
Confidence            33444433  678999999999999999998776 68999999999999999999988776 469999999944444321


Q ss_pred             hcccCCCceeEEEEeCCCc-----------ccHHHHHHHHhccCCCeEEEEe
Q 029803           89 KYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                          ..++||+|++.....           ....+++++.+.|+|||++++.
T Consensus       108 ----~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~  155 (202)
T PRK00121        108 ----PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFA  155 (202)
T ss_pred             ----CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEE
Confidence                246899999863211           1467899999999999999884

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=1.4e-15  Score=113.88  Aligned_cols=114  Identities=18%  Similarity=0.276  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      ..++-..+...++.+|+|.|+|+|..+.++|....+.++|+++|..++.++.|++|++..++.+++++..+|..+...  
T Consensus        83 ~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~--  160 (256)
T COG2519          83 AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID--  160 (256)
T ss_pred             HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc--
Confidence            456666677889999999999999999999998877899999999999999999999999999889999999987543  


Q ss_pred             hhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           88 LKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                            .+.||.||+|-  +...+.++.+.++|+|||.+++-..
T Consensus       161 ------~~~vDav~LDm--p~PW~~le~~~~~Lkpgg~~~~y~P  196 (256)
T COG2519         161 ------EEDVDAVFLDL--PDPWNVLEHVSDALKPGGVVVVYSP  196 (256)
T ss_pred             ------ccccCEEEEcC--CChHHHHHHHHHHhCCCcEEEEEcC
Confidence                  35999999985  5678899999999999999998533

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.66  E-value=5.3e-16  Score=115.29  Aligned_cols=112  Identities=22%  Similarity=0.342  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      .++.+++ ++...++.+|||||||+||.+..++....+.++|+++|.+++.++.|++++...+.. +++++++|....++
T Consensus        60 ~~a~~l~-~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~gdg~~g~~  137 (209)
T PF01135_consen   60 MVARMLE-ALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVGDGSEGWP  137 (209)
T ss_dssp             HHHHHHH-HTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES-GGGTTG
T ss_pred             HHHHHHH-HHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEcchhhccc
Confidence            3444444 445889999999999999999999988776789999999999999999999998876 69999999876544


Q ss_pred             HHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           86 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .       ..+||.|++.+..+..+.   .+.+.|++||.+++-
T Consensus       138 ~-------~apfD~I~v~~a~~~ip~---~l~~qL~~gGrLV~p  171 (209)
T PF01135_consen  138 E-------EAPFDRIIVTAAVPEIPE---ALLEQLKPGGRLVAP  171 (209)
T ss_dssp             G-------G-SEEEEEESSBBSS--H---HHHHTEEEEEEEEEE
T ss_pred             c-------CCCcCEEEEeeccchHHH---HHHHhcCCCcEEEEE
Confidence            3       378999999876655443   356789999999983

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.65  E-value=1e-14  Score=107.72  Aligned_cols=106  Identities=21%  Similarity=0.335  Sum_probs=87.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .+..++||||||+|..+..++...| +.+++++|+++.+++.+++++...++. +++++++|+.+....+.    ..+++
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~----~~~~~   88 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFF----PDGSL   88 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhC----CCCce
Confidence            3567999999999999999999876 789999999999999999999888876 69999999988655432    13589


Q ss_pred             eEEEEeCCC---cc--------cHHHHHHHHhccCCCeEEEEe
Q 029803           98 DYAFVDADK---DN--------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        98 D~i~~d~~~---~~--------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |.|+++...   ..        ...+++.+.++|+|||.+.+.
T Consensus        89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~  131 (194)
T TIGR00091        89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFK  131 (194)
T ss_pred             eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEE
Confidence            999987421   11        257899999999999999873

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.65  E-value=2.3e-14  Score=110.59  Aligned_cols=118  Identities=15%  Similarity=0.220  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      ..+...++...++.+|||+|||+|..++.++..+...++|+++|+++.+++.++++++.+++. ++++++.|+...... 
T Consensus        60 s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~-  137 (264)
T TIGR00446        60 SMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAA-  137 (264)
T ss_pred             HHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhh-
Confidence            344445556667789999999999999999998765689999999999999999999999875 599999998664222 


Q ss_pred             hhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           88 LKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                            .++||.|++|+....                         ...+++.++++|+|||+|+......
T Consensus       138 ------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~  202 (264)
T TIGR00446       138 ------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL  202 (264)
T ss_pred             ------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence                  356999999853221                         1347888889999999999875543

>PRK00811 spermidine synthase; Provisional

Probab=99.65  E-value=1.3e-14  Score=113.08  Aligned_cols=106  Identities=21%  Similarity=0.271  Sum_probs=86.9

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC--C--CCcEEEEEcchHHHHHHHhhccc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V--DHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~--~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      ..+|++||+||||.|..+.++++..+ ..+|+++|+++++++.+++++...+  .  .++++++.+|+..+++..     
T Consensus        74 ~~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~-----  147 (283)
T PRK00811         74 HPNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAET-----  147 (283)
T ss_pred             CCCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhC-----
Confidence            45789999999999999999987533 5799999999999999999987532  1  468999999999877652     


Q ss_pred             CCCceeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEe
Q 029803           93 NEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       .++||+|++|...+       ...++++.+.+.|+|||++++.
T Consensus       148 -~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        148 -ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             -CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence             47899999986322       1256789999999999999974

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.65  E-value=2.6e-15  Score=115.71  Aligned_cols=112  Identities=13%  Similarity=0.160  Sum_probs=88.2

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh--cCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      ....++.+|||+|||+|..+..+++..++.++|+++|++++|++.|+++...  .....+++++++|+.+. +      .
T Consensus        69 ~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~l-p------~  141 (261)
T PLN02233         69 SGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDL-P------F  141 (261)
T ss_pred             hCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccC-C------C
Confidence            3455778999999999999999988765468999999999999999887542  22234699999998653 1      1


Q ss_pred             CCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           93 NEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        93 ~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .+++||+|++..   ...+...+++++.+.|||||.+++.+...
T Consensus       142 ~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~  185 (261)
T PLN02233        142 DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK  185 (261)
T ss_pred             CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCC
Confidence            257899998864   33466788999999999999998876653

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.64  E-value=1.6e-14  Score=113.66  Aligned_cols=117  Identities=15%  Similarity=0.275  Sum_probs=91.9

Q ss_pred             cHHHHHHHHHHHH-H-c--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc
Q 029803            4 LTIHGQLMAMLLR-L-V--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   79 (187)
Q Consensus         4 ~~~~~~ll~~l~~-~-~--~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   79 (187)
                      .+.+..++...+. . .  ++.+|||+|||+|..++.++...+ +.+++++|+++.+++.|++|++.+++.++++++++|
T Consensus       114 r~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D  192 (307)
T PRK11805        114 RSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD  192 (307)
T ss_pred             CCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence            3455566555443 1 2  237899999999999999998876 789999999999999999999998887789999999


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCC----------------------------cccHHHHHHHHhccCCCeEEEEe
Q 029803           80 ALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~D~i~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+.++        .++||+|+++...                            ..+..+++.+.+.|+|||.+++.
T Consensus       193 ~~~~l~--------~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E  262 (307)
T PRK11805        193 LFAALP--------GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE  262 (307)
T ss_pred             hhhhCC--------CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            866432        2579999987411                            11346678888999999999985

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.64  E-value=1.2e-14  Score=119.23  Aligned_cols=121  Identities=21%  Similarity=0.261  Sum_probs=94.9

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      +.....++..++...++.+|||+|||+|..+..++...+ +++|+++|+++++++.++++++..++.  ++++++|+.+.
T Consensus       229 Qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~  305 (427)
T PRK10901        229 QDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDP  305 (427)
T ss_pred             ECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccc
Confidence            344455666666777889999999999999999998875 589999999999999999999988864  68999998754


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ...+     ..++||.|++|+....                         ...+++.+.++|+|||.+++..+.
T Consensus       306 ~~~~-----~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs  374 (427)
T PRK10901        306 AQWW-----DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS  374 (427)
T ss_pred             hhhc-----ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            2211     1368999999863211                         125788888999999999987654

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.64  E-value=8.3e-15  Score=120.84  Aligned_cols=119  Identities=24%  Similarity=0.246  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      ....+...++...++.+|||+|||+|..+..++..++..++|+++|+++++++.++++++..++. +++++++|+.+..+
T Consensus       237 ~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~  315 (445)
T PRK14904        237 PTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSP  315 (445)
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCccccccc
Confidence            34445555556667789999999999999999987765679999999999999999999998885 59999999876431


Q ss_pred             HHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           86 QLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                              .++||.|++|+....                         ...+++.+++.|+|||.+++..+..
T Consensus       316 --------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~  380 (445)
T PRK14904        316 --------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI  380 (445)
T ss_pred             --------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence                    368999999853210                         1247888899999999999976553

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.63  E-value=1.3e-14  Score=119.07  Aligned_cols=123  Identities=19%  Similarity=0.222  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      .....++..++...++.+|||+|||+|+.+..++..++ .++|+++|+++++++.++++++..++..++++..+|.....
T Consensus       224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~  302 (426)
T TIGR00563       224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS  302 (426)
T ss_pred             CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence            34456666666777889999999999999999999886 78999999999999999999999887644455667764321


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      . +.    ..++||.|++|+....                         ...++++++++|+|||.+++..+..
T Consensus       303 ~-~~----~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       303 Q-WA----ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             c-cc----cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            1 00    1368999999853211                         1357888899999999999976664

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=99.63  E-value=4.5e-16  Score=104.04  Aligned_cols=102  Identities=31%  Similarity=0.571  Sum_probs=51.5

Q ss_pred             EEEcccccHHHHHHHhhCCCCC--EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803           24 IEIGVFTGYSLLLTALTIPEDG--QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  101 (187)
Q Consensus        24 LeiG~g~G~~~~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  101 (187)
                      ||||++.|.++.++++.+++..  +++++|..+. .+.+++.+++.++.++++++.+++.+.++.+.     .++||+|+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-----~~~~dli~   74 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-----DGPIDLIF   74 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-----H--EEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-----CCCEEEEE
Confidence            7999999999999999887554  7999999886 44556666666777789999999999888773     37999999


Q ss_pred             EeCCC--cccHHHHHHHHhccCCCeEEEEeCC
Q 029803          102 VDADK--DNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus       102 ~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +|+.+  +.....++.+++.|+|||+|++||+
T Consensus        75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~dD~  106 (106)
T PF13578_consen   75 IDGDHSYEAVLRDLENALPRLAPGGVIVFDDY  106 (106)
T ss_dssp             EES---HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred             ECCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence            99865  5567789999999999999999974

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.63  E-value=4.3e-15  Score=111.89  Aligned_cols=115  Identities=21%  Similarity=0.291  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      +-||..++......+|||+|||+|..++.+|+..+ ..++++||+++++++.|+++++.+++.++++++++|..++.+..
T Consensus        33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~  111 (248)
T COG4123          33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKAL  111 (248)
T ss_pred             HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcc
Confidence            45777888877889999999999999999999876 59999999999999999999999999999999999998877654


Q ss_pred             hhcccCCCceeEEEEeCCC---------------------cccHHHHHHHHhccCCCeEEEE
Q 029803           88 LKYSENEGSFDYAFVDADK---------------------DNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~---------------------~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                           ...+||+|++++..                     -...++++.+..+||+||.+.+
T Consensus       112 -----~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~  168 (248)
T COG4123         112 -----VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAF  168 (248)
T ss_pred             -----cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEE
Confidence                 23579999998421                     0124677888899999999987

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.63  E-value=5.7e-15  Score=100.18  Aligned_cols=102  Identities=24%  Similarity=0.446  Sum_probs=85.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      +.+|||+|||+|..+..+++..  ..+++++|++|..++.++.++...+...+++++++|..+..+.+     ..++||+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----~~~~~D~   73 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----PDGKFDL   73 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----TTT-EEE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----cCceeEE
Confidence            3589999999999999999875  47999999999999999999999988888999999998876433     3589999


Q ss_pred             EEEeCCCc-----------ccHHHHHHHHhccCCCeEEEE
Q 029803          100 AFVDADKD-----------NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus       100 i~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+.+....           .+..+++++.++|+|||.+++
T Consensus        74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence            99985321           245789999999999999886

...

>PRK01581 speE spermidine synthase; Validated

Probab=99.63  E-value=3.6e-14  Score=112.31  Aligned_cols=107  Identities=15%  Similarity=0.235  Sum_probs=85.6

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHH--HH---hcCC-CCcEEEEEcchHHHHHHHhh
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI--IK---KAGV-DHKINFIESEALSVLDQLLK   89 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~---~~~~-~~~~~~~~~d~~~~~~~~~~   89 (187)
                      ...+|++||+||||+|..+..+++.. +..+|+++|+++++++.|++.  +.   ...+ .++++++.+|+.+++...  
T Consensus       147 ~h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~--  223 (374)
T PRK01581        147 KVIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP--  223 (374)
T ss_pred             hCCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc--
Confidence            36788999999999999988888753 367999999999999999973  11   1122 468999999999987653  


Q ss_pred             cccCCCceeEEEEeCCCc-------c-cHHHHHHHHhccCCCeEEEEe
Q 029803           90 YSENEGSFDYAFVDADKD-------N-YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~~-------~-~~~~~~~~~~~L~~gG~lv~~  129 (187)
                          .++||+|++|...+       . ..++++.+.+.|+|||++++.
T Consensus       224 ----~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        224 ----SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             ----CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence                46899999996322       1 256899999999999999885

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.62  E-value=3.7e-15  Score=113.02  Aligned_cols=117  Identities=18%  Similarity=0.223  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH-HH
Q 029803            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VL   84 (187)
Q Consensus         6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~   84 (187)
                      .=..++-..+...++.+|||.|+|+|..+.++++.+.+.++|+++|..++.++.|+++++.+++.+++++.+.|..+ .+
T Consensus        27 kD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~  106 (247)
T PF08704_consen   27 KDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF  106 (247)
T ss_dssp             HHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--
T ss_pred             chHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc
Confidence            33456667778899999999999999999999998877999999999999999999999999999899999999964 22


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhcc-CCCeEEEEe
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL-KVGGIAVYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L-~~gG~lv~~  129 (187)
                      +.     .....+|.||+|.  +.....+..+.+.| ++||.+++-
T Consensus       107 ~~-----~~~~~~DavfLDl--p~Pw~~i~~~~~~L~~~gG~i~~f  145 (247)
T PF08704_consen  107 DE-----ELESDFDAVFLDL--PDPWEAIPHAKRALKKPGGRICCF  145 (247)
T ss_dssp             ST-----T-TTSEEEEEEES--SSGGGGHHHHHHHE-EEEEEEEEE
T ss_pred             cc-----cccCcccEEEEeC--CCHHHHHHHHHHHHhcCCceEEEE
Confidence            11     0136899999996  45567788889999 899999884

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.62  E-value=4.8e-14  Score=114.22  Aligned_cols=109  Identities=20%  Similarity=0.321  Sum_probs=88.4

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ..++++|||+|||+|.+++.++..  ...+|+++|+++.+++.+++|++.+++. .+++++++|+.+.+..+...   .+
T Consensus       218 ~~~g~rVLDlfsgtG~~~l~aa~~--ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~---~~  292 (396)
T PRK15128        218 YVENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---GE  292 (396)
T ss_pred             hcCCCeEEEeccCCCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhc---CC
Confidence            457889999999999998876653  2459999999999999999999999886 47999999999987765321   46


Q ss_pred             ceeEEEEeCCC------------cccHHHHHHHHhccCCCeEEEEeC
Q 029803           96 SFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        96 ~~D~i~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +||+|++|+..            ..|..+++.+.++|+|||++++..
T Consensus       293 ~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s  339 (396)
T PRK15128        293 KFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS  339 (396)
T ss_pred             CCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            89999999642            135566777889999999998743

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.62  E-value=1.3e-14  Score=111.03  Aligned_cols=106  Identities=15%  Similarity=0.180  Sum_probs=86.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++.+|||+|||+|..+..+++.+ .++.+++++|+++++++.|++++...+...+++++++|+.+. +        .+.
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~-~--------~~~  125 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI-A--------IEN  125 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC-C--------CCC
Confidence            466799999999999999888753 247899999999999999999999888777899999998653 1        246


Q ss_pred             eeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           97 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|+|++...     ......+++++.+.|+|||.+++.+.+
T Consensus       126 ~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~  166 (247)
T PRK15451        126 ASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKF  166 (247)
T ss_pred             CCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            899887532     223457899999999999999997754

>TIGR00740 methyltransferase, putative

Probab=99.61  E-value=2.8e-14  Score=108.69  Aligned_cols=107  Identities=12%  Similarity=0.131  Sum_probs=86.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++.+|||+|||+|..+..+++.++ ++.+++++|+++++++.|++++...+...+++++++|+.+..         ...
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~  122 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE---------IKN  122 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---------CCC
Confidence            3667999999999999999998753 378999999999999999999987766667999999987641         246


Q ss_pred             eeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           97 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        97 ~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +|+|++...     ......+++++.+.|+|||.+++.+...
T Consensus       123 ~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~  164 (239)
T TIGR00740       123 ASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  164 (239)
T ss_pred             CCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence            898877542     1234678999999999999999987654

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02366 spermidine synthase

Probab=99.61  E-value=5.8e-14  Score=110.13  Aligned_cols=107  Identities=20%  Similarity=0.307  Sum_probs=88.0

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ..++++||+||||.|..+.++++. +...+|+.+|++++.++.+++.+...+  + .++++++.+|+.+++...     .
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-----~  162 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-----P  162 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-----c
Confidence            467899999999999999999886 435799999999999999999987532  2 368999999999887653     1


Q ss_pred             CCceeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++||+|++|...+       ...++++.+.+.|+|||+++..
T Consensus       163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q  205 (308)
T PLN02366        163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ  205 (308)
T ss_pred             CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence            36899999996432       1356899999999999999874

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.61  E-value=7e-15  Score=109.28  Aligned_cols=104  Identities=18%  Similarity=0.241  Sum_probs=87.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||.|..+..+|+.   +.+|+++|++++.++.|+.+....++.  ++..+..+.+....       +++|
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~-------~~~F  125 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA-------GGQF  125 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc-------CCCc
Confidence            47889999999999999999986   689999999999999999998887764  66777777665432       4899


Q ss_pred             eEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           98 DYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        98 D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      |+|+|--   +.++...+++.|.+++||||.++++.+.+
T Consensus       126 DvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinr  164 (243)
T COG2227         126 DVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINR  164 (243)
T ss_pred             cEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEecccc
Confidence            9999863   34566779999999999999999987653

>PLN02244 tocopherol O-methyltransferase

Probab=99.61  E-value=1.1e-14  Score=116.30  Aligned_cols=106  Identities=16%  Similarity=0.234  Sum_probs=88.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|.++..+++.+  +.+|+++|+++.+++.++++.+..++.++++++++|+.+. +      ...++|
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~-~------~~~~~F  187 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQ-P------FEDGQF  187 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccC-C------CCCCCc
Confidence            466899999999999999999865  5799999999999999999998888877899999998653 1      125799


Q ss_pred             eEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           98 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        98 D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |+|++...   ..+...+++++.++|||||.+++.+..
T Consensus       188 D~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~  225 (340)
T PLN02244        188 DLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC  225 (340)
T ss_pred             cEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence            99998542   345567899999999999999986544

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.61  E-value=9.4e-15  Score=109.36  Aligned_cols=112  Identities=21%  Similarity=0.252  Sum_probs=89.3

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      .+.....+..+++..++.+|||+|||+|+.+..++...   .+++++|+++++++.++++++..++.+ +++.++|+.+.
T Consensus        63 ~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~  138 (212)
T PRK00312         63 QPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWKG  138 (212)
T ss_pred             cHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCcccC
Confidence            45555565666677788999999999999999888763   489999999999999999999888764 99999997553


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++.       .++||+|+++......   .+.+.+.|+|||.+++.
T Consensus       139 ~~~-------~~~fD~I~~~~~~~~~---~~~l~~~L~~gG~lv~~  174 (212)
T PRK00312        139 WPA-------YAPFDRILVTAAAPEI---PRALLEQLKEGGILVAP  174 (212)
T ss_pred             CCc-------CCCcCEEEEccCchhh---hHHHHHhcCCCcEEEEE
Confidence            221       3689999998755443   45677899999999985

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.60  E-value=2e-14  Score=108.41  Aligned_cols=103  Identities=19%  Similarity=0.294  Sum_probs=87.2

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  100 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  100 (187)
                      ++|||||||+|..+..+++.++ +.+++++|+++++++.+++++...++..+++++.+|..+. + +      .++||+|
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~-~-~------~~~fD~I   71 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKD-P-F------PDTYDLV   71 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccC-C-C------CCCCCEe
Confidence            4799999999999999998876 6899999999999999999999888888899999987543 1 1      3589999


Q ss_pred             EEeC---CCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803          101 FVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus       101 ~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ++..   ...+...+++++.++|+|||.+++.+..
T Consensus        72 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  106 (224)
T smart00828       72 FGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI  106 (224)
T ss_pred             ehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence            8652   2345678999999999999999998764

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.60  E-value=1.4e-14  Score=114.25  Aligned_cols=104  Identities=19%  Similarity=0.176  Sum_probs=84.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++.+|||||||+|..+..+++.   +.+|+++|+++++++.|+++....+...+++++++++.+...       ..++||
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~-------~~~~FD  200 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD-------EGRKFD  200 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh-------ccCCCC
Confidence            4568999999999999988863   679999999999999999987665555579999999866421       147899


Q ss_pred             EEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           99 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        99 ~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|++..   ...+...+++.+.++|||||.+++....
T Consensus       201 ~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n  237 (322)
T PLN02396        201 AVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN  237 (322)
T ss_pred             EEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence            999864   2345678999999999999999997543

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.59  E-value=5.6e-14  Score=112.75  Aligned_cols=115  Identities=21%  Similarity=0.328  Sum_probs=96.6

Q ss_pred             HHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcc
Q 029803           13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYS   91 (187)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~   91 (187)
                      .+....++++||++.|+||..++..|..-  ..+|++||.|...++.|++|++.+++. .++.++++|+++++...... 
T Consensus       211 ~l~~~~~GkrvLNlFsYTGgfSv~Aa~gG--A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~-  287 (393)
T COG1092         211 ALGELAAGKRVLNLFSYTGGFSVHAALGG--ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERR-  287 (393)
T ss_pred             HHhhhccCCeEEEecccCcHHHHHHHhcC--CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhc-
Confidence            34445569999999999999999998862  249999999999999999999999986 66899999999999887544 


Q ss_pred             cCCCceeEEEEeCC------------CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           92 ENEGSFDYAFVDAD------------KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        92 ~~~~~~D~i~~d~~------------~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                        +.+||+|++|+.            ...|...+..+.++|+|||++++....
T Consensus       288 --g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~  338 (393)
T COG1092         288 --GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCS  338 (393)
T ss_pred             --CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence              569999999963            134667888889999999999987655

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.59  E-value=1.2e-14  Score=107.64  Aligned_cols=102  Identities=18%  Similarity=0.240  Sum_probs=82.2

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +...++.+|||+|||+|..+.++++.   +.+|+++|+++.+++.++++....++. ++++...|..+.  .+      .
T Consensus        26 l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~--~~------~   93 (197)
T PRK11207         26 VKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNL--TF------D   93 (197)
T ss_pred             cccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhC--Cc------C
Confidence            34567789999999999999999975   569999999999999999998887774 488888887653  11      3


Q ss_pred             CceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEE
Q 029803           95 GSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        95 ~~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ++||+|++...     ......+++++.++|+|||++++
T Consensus        94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            57999997642     12456789999999999999654

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.59  E-value=2.2e-13  Score=104.40  Aligned_cols=110  Identities=16%  Similarity=0.235  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHH-HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            6 IHGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         6 ~~~~ll~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      .+..++..+.. ..++.+|||+|||+|..++.+++. . ..+++++|+++.+++.|++++..+++..++.+..++     
T Consensus       105 tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~-----  177 (250)
T PRK00517        105 TTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD-----  177 (250)
T ss_pred             HHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC-----
Confidence            34445555544 347889999999999999877764 3 347999999999999999999988775444443322     


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                                .+||+|+++........+++++.+.|+|||++++.+..
T Consensus       178 ----------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~  215 (250)
T PRK00517        178 ----------LKADVIVANILANPLLELAPDLARLLKPGGRLILSGIL  215 (250)
T ss_pred             ----------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence                      26999998766566677889999999999999997554

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.59  E-value=6.2e-14  Score=109.55  Aligned_cols=116  Identities=15%  Similarity=0.135  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHH-HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            6 IHGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         6 ~~~~ll~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      .+...+..+.. ..++++|||+|||+|..+..+++. + ..+++++|+++.+++.+++++..+++..++.+..++.... 
T Consensus       145 tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-  221 (288)
T TIGR00406       145 TTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-  221 (288)
T ss_pred             HHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-
Confidence            33334444433 346789999999999999888764 3 4699999999999999999999888877777777763221 


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                              ..++||+|+++........+++.+.++|+|||++++....
T Consensus       222 --------~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       222 --------IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             --------cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence                    1468999999876666678889999999999999997654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.58  E-value=1.9e-14  Score=111.67  Aligned_cols=112  Identities=17%  Similarity=0.284  Sum_probs=90.8

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ....++.+|||+|||+|..+..++....+.++|+++|+++++++.++++....++. ++++..+|+.+. + +     ..
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l-~-~-----~~  144 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEAL-P-V-----AD  144 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhC-C-C-----CC
Confidence            34567889999999999998888877655679999999999999999999888775 689999997553 1 1     24


Q ss_pred             CceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803           95 GSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG  134 (187)
Q Consensus        95 ~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      ++||+|++...   ..+....++++.++|+|||.+++.+....
T Consensus       145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~  187 (272)
T PRK11873        145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLR  187 (272)
T ss_pred             CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeecc
Confidence            68999997742   33556789999999999999999876643

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.58  E-value=2.5e-14  Score=105.70  Aligned_cols=104  Identities=15%  Similarity=0.187  Sum_probs=81.0

Q ss_pred             HHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      ..+...++.+|||+|||+|..+.++++.   +.+|+++|+++.+++.++++....++.  ++....|.... + +     
T Consensus        24 ~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~-~-~-----   91 (195)
T TIGR00477        24 EAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAA-A-L-----   91 (195)
T ss_pred             HHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhc-c-c-----
Confidence            3445567889999999999999999974   579999999999999999988877763  66777776432 1 1     


Q ss_pred             CCCceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEe
Q 029803           93 NEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       .++||+|++...     ......+++++.++|+|||++++.
T Consensus        92 -~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        92 -NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             -cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence             357999987632     234567899999999999986553

Part of a tellurite-reducing operon tehA and tehB

>TIGR00417 speE spermidine synthase

Probab=99.57  E-value=2.3e-13  Score=105.38  Aligned_cols=106  Identities=22%  Similarity=0.262  Sum_probs=86.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ..+|++||+||||+|..+..+++..+ ..+++++|+++++++.+++++...+  . ..+++++.+|+.+.+...      
T Consensus        70 ~~~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~------  142 (270)
T TIGR00417        70 HPNPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT------  142 (270)
T ss_pred             CCCCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC------
Confidence            45678999999999999988887653 5789999999999999999886543  1 257899999998877653      


Q ss_pred             CCceeEEEEeCCCc-----c--cHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKD-----N--YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~-----~--~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++||+|++|....     .  ..++++.+.+.|+|||++++.
T Consensus       143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            47899999986421     1  357889999999999999985

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=99.57  E-value=3.3e-13  Score=98.79  Aligned_cols=157  Identities=19%  Similarity=0.238  Sum_probs=119.7

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccH--HHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGY--SLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   79 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~--~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   79 (187)
                      .+|..++||..++.-.+.+.|+|+++..|.  +++.|+.+. ..+++++||-++++.+...++.+...++.+.++|+.++
T Consensus        25 ~ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~  104 (218)
T PF07279_consen   25 KEPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGE  104 (218)
T ss_pred             CCCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecC
Confidence            467889999999999999999999877543  344444332 23799999999999988899998888888778999998


Q ss_pred             hH-HHHHHHhhcccCCCceeEEEEeCCCcccH-HHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHH
Q 029803           80 AL-SVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL  157 (187)
Q Consensus        80 ~~-~~~~~~~~~~~~~~~~D~i~~d~~~~~~~-~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (187)
                      .. +.++.+       ...|++++|+..+++. ..++.+ ++-+.|.+++..|.+..+.      .            --
T Consensus       105 ~~e~~~~~~-------~~iDF~vVDc~~~d~~~~vl~~~-~~~~~GaVVV~~Na~~r~~------~------------~~  158 (218)
T PF07279_consen  105 APEEVMPGL-------KGIDFVVVDCKREDFAARVLRAA-KLSPRGAVVVCYNAFSRST------N------------GF  158 (218)
T ss_pred             CHHHHHhhc-------cCCCEEEEeCCchhHHHHHHHHh-ccCCCceEEEEeccccCCc------C------------Cc
Confidence            54 466665       7899999999888777 677654 5445667777787764221      0            12


Q ss_pred             HHHHHhhcCCCeEEEeeecCCceEEEEE
Q 029803          158 DLNRSLADDPRVQLSHVALGDGITICRR  185 (187)
Q Consensus       158 ~~~~~l~~~~~~~~~~lp~~~G~~~~~~  185 (187)
                      .|...++..+.+.+++||+|.|+.|++-
T Consensus       159 ~w~~~~~~~r~Vrsv~LPIG~GleVt~i  186 (218)
T PF07279_consen  159 SWRSVLRGRRVVRSVFLPIGKGLEVTRI  186 (218)
T ss_pred             cHHHhcCCCCceeEEEeccCCCeEEEEE
Confidence            4555667778899999999999999873

The function of this family is unknown.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.56  E-value=6.2e-14  Score=109.39  Aligned_cols=117  Identities=19%  Similarity=0.282  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHH---cCC-CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            5 TIHGQLMAMLLRL---VNA-KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         5 ~~~~~ll~~l~~~---~~~-~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      +.+..++......   .++ .+|||+|||+|..++.++...+ +.+++++|+++++++.|++|+..+++.++++++++|.
T Consensus        96 ~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~  174 (284)
T TIGR00536        96 PETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNL  174 (284)
T ss_pred             CccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECch
Confidence            3445555554432   233 6899999999999999999876 7899999999999999999999888877799999998


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCC----------------------------cccHHHHHHHHhccCCCeEEEEeC
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .+.++        ..+||+|+++...                            ..+..+++++.+.|+|||++++.-
T Consensus       175 ~~~~~--------~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~  244 (284)
T TIGR00536       175 FEPLA--------GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI  244 (284)
T ss_pred             hccCc--------CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence            76321        2489999987310                            024457788889999999999863

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.56  E-value=2e-13  Score=99.62  Aligned_cols=109  Identities=19%  Similarity=0.184  Sum_probs=86.5

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      ..+|...+...++.+|||+|||+|..+..++...   .+++++|+++++++.+++++...+.  +++++.+|..+..   
T Consensus         8 ~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---   79 (179)
T TIGR00537         8 SLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV---   79 (179)
T ss_pred             HHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc---
Confidence            3566666677788999999999999999998753   3899999999999999999987765  4888999976531   


Q ss_pred             hhcccCCCceeEEEEeCCCc------------------------ccHHHHHHHHhccCCCeEEEEeC
Q 029803           88 LKYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                            .++||+|+++....                        ....+++++.++|+|||.+++..
T Consensus        80 ------~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~  140 (179)
T TIGR00537        80 ------RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQ  140 (179)
T ss_pred             ------CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEE
Confidence                  25899999874210                        03457888899999999988853

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.55  E-value=9.9e-14  Score=109.39  Aligned_cols=104  Identities=22%  Similarity=0.394  Sum_probs=84.0

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +...++.+|||||||+|+.+..+++..+..++|+++|.++++++.|+++++..+.. ++.++++|+.+..+.       .
T Consensus        76 L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~~~~~-------~  147 (322)
T PRK13943         76 VGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYYGVPE-------F  147 (322)
T ss_pred             cCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhhcccc-------c
Confidence            34567789999999999999999988764568999999999999999999988874 689999998664332       3


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+||+|+++....+.   .+.+.+.|+|||.+++.
T Consensus       148 ~~fD~Ii~~~g~~~i---p~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        148 APYDVIFVTVGVDEV---PETWFTQLKEGGRVIVP  179 (322)
T ss_pred             CCccEEEECCchHHh---HHHHHHhcCCCCEEEEE
Confidence            679999998654433   34467899999998874

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.55  E-value=3.9e-13  Score=99.31  Aligned_cols=113  Identities=14%  Similarity=0.126  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      ..++..+....++.+|||+|||+|..++.++...  ..+|+++|.++++++.+++|++.++.. +++++++|+.+.++..
T Consensus        42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~  118 (199)
T PRK10909         42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQP  118 (199)
T ss_pred             HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhc
Confidence            3345555555567899999999999998755443  369999999999999999999998875 6999999998766432


Q ss_pred             hhcccCCCceeEEEEeCC-Ccc-cHHHHHHHHh--ccCCCeEEEEe
Q 029803           88 LKYSENEGSFDYAFVDAD-KDN-YCNYHERLMK--LLKVGGIAVYD  129 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~-~~~-~~~~~~~~~~--~L~~gG~lv~~  129 (187)
                            .++||+||+|+. ... ....++.+.+  +|+++++++++
T Consensus       119 ------~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve  158 (199)
T PRK10909        119 ------GTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVE  158 (199)
T ss_pred             ------CCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEE
Confidence                  357999999976 233 3344454443  47899999886

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.55  E-value=5.8e-14  Score=112.69  Aligned_cols=101  Identities=13%  Similarity=0.130  Sum_probs=82.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC--CcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      ..+|||+|||+|..++.+++..| ..+|+++|.++.+++.++++++.++..  .+++++.+|..+.++        ..+|
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~--------~~~f  299 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE--------PFRF  299 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC--------CCCE
Confidence            46999999999999999999877 789999999999999999999877643  368899988765321        3589


Q ss_pred             eEEEEeCCC--------cccHHHHHHHHhccCCCeEEEEe
Q 029803           98 DYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        98 D~i~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|+++...        .....+++.+.+.|+|||.+++.
T Consensus       300 DlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV  339 (378)
T PRK15001        300 NAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  339 (378)
T ss_pred             EEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEE
Confidence            999997532        11346788889999999998875

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.55  E-value=3.7e-14  Score=109.16  Aligned_cols=98  Identities=23%  Similarity=0.324  Sum_probs=81.4

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..++...+ +.+|+++|+++.+++.+++++      .+++++.+|+.+..+        .++
T Consensus        29 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~--------~~~   93 (258)
T PRK01683         29 LENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQP--------PQA   93 (258)
T ss_pred             CcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCC--------CCC
Confidence            45678999999999999999998876 789999999999999998874      247889999865421        368


Q ss_pred             eeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ||+|++...   ..+...+++++.+.|+|||.+++.
T Consensus        94 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~  129 (258)
T PRK01683         94 LDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ  129 (258)
T ss_pred             ccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            999998753   345678899999999999999885

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.55  E-value=9.9e-14  Score=120.01  Aligned_cols=110  Identities=19%  Similarity=0.318  Sum_probs=91.2

Q ss_pred             HHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhccc
Q 029803           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      +....++++|||+|||+|.++++++..-  ..+|+++|+++.+++.+++|++.+++. ++++++++|+.+.+..+     
T Consensus       533 ~~~~~~g~rVLDlf~gtG~~sl~aa~~G--a~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~-----  605 (702)
T PRK11783        533 IGQMAKGKDFLNLFAYTGTASVHAALGG--AKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA-----  605 (702)
T ss_pred             HHHhcCCCeEEEcCCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc-----
Confidence            3445678999999999999999999852  347999999999999999999999886 68999999999877654     


Q ss_pred             CCCceeEEEEeCCC--------------cccHHHHHHHHhccCCCeEEEEeCC
Q 029803           93 NEGSFDYAFVDADK--------------DNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        93 ~~~~~D~i~~d~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                       .++||+|++|+..              ..+...++.+.++|+|||++++...
T Consensus       606 -~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~  657 (702)
T PRK11783        606 -REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN  657 (702)
T ss_pred             -CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence             4689999999642              1245678888899999999988644

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.54  E-value=3.3e-14  Score=109.29  Aligned_cols=96  Identities=15%  Similarity=0.116  Sum_probs=79.3

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..++...+ +.+|+++|+++.+++.+++.        +++++++|+.+..+        .++
T Consensus        27 ~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~--------~~~   89 (255)
T PRK14103         27 AERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKP--------KPD   89 (255)
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCC--------CCC
Confidence            34678999999999999999998876 78999999999999988753        37788999865421        368


Q ss_pred             eeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ||+|++...   ..+....++++.+.|+|||.+++.
T Consensus        90 fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         90 TDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             ceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            999998752   345677899999999999999885

>PRK04266 fibrillarin; Provisional

Probab=99.54  E-value=7e-14  Score=105.33  Aligned_cols=107  Identities=14%  Similarity=0.138  Sum_probs=82.2

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +...++.+|||+|||+|..+..++...+ .++|+++|+++++++.+.++++..   .++.++.+|+.+.....    ...
T Consensus        68 l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~----~l~  139 (226)
T PRK04266         68 FPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYA----HVV  139 (226)
T ss_pred             CCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhh----hcc
Confidence            4566888999999999999999999876 689999999999999888776543   35888899986421110    013


Q ss_pred             CceeEEEEeCCCc-ccHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADKD-NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~-~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++||+|+++.... .....++++.+.|||||.+++.
T Consensus       140 ~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        140 EKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             ccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence            5699999876432 2234578999999999999984

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.54  E-value=9.4e-14  Score=109.47  Aligned_cols=114  Identities=12%  Similarity=0.101  Sum_probs=91.9

Q ss_pred             HHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029803           11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY   90 (187)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   90 (187)
                      +.......+..+|||||||+|..+..+++..| +.+++++|. |++++.++++++..++.++++++.+|+.+.  .    
T Consensus       141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~--~----  212 (306)
T TIGR02716       141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--S----  212 (306)
T ss_pred             HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCC--C----
Confidence            33334456778999999999999999999987 789999997 789999999999999888999999998752  1    


Q ss_pred             ccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           91 SENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        91 ~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                         .+.+|+|++..     ........++++.+.|+|||.+++.+..+..
T Consensus       213 ---~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~  259 (306)
T TIGR02716       213 ---YPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD  259 (306)
T ss_pred             ---CCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence               13479987664     1223456899999999999999998876543

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=3.5e-13  Score=104.20  Aligned_cols=116  Identities=18%  Similarity=0.252  Sum_probs=87.8

Q ss_pred             HHHHHHHHHH-HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            7 HGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         7 ~~~ll~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      +.-.|..+-. ..++++|||+|||+|..++..++.-  ..+++++|++|.+++.+++|++.+++...++....+..+.. 
T Consensus       149 T~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLG--A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-  225 (300)
T COG2264         149 TSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLG--AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-  225 (300)
T ss_pred             HHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcC--CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-
Confidence            3334444433 3488999999999999999888753  46899999999999999999999988753333333333321 


Q ss_pred             HHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           86 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                             ..++||+|+++--..-...+...+.++++|||+++++.++
T Consensus       226 -------~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~lIlSGIl  265 (300)
T COG2264         226 -------ENGPFDVIVANILAEVLVELAPDIKRLLKPGGRLILSGIL  265 (300)
T ss_pred             -------ccCcccEEEehhhHHHHHHHHHHHHHHcCCCceEEEEeeh
Confidence                   1369999998754455567788888999999999998766

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.54  E-value=3e-14  Score=94.38  Aligned_cols=93  Identities=20%  Similarity=0.378  Sum_probs=72.9

Q ss_pred             EEEEcccccHHHHHHHhhCCC--CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803           23 TIEIGVFTGYSLLLTALTIPE--DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  100 (187)
Q Consensus        23 vLeiG~g~G~~~~~la~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  100 (187)
                      |||+|||+|..+..++..++.  ..+++++|+++++++.++++....+.  +++++++|+.+. +..      .++||+|
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l-~~~------~~~~D~v   71 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL-PFS------DGKFDLV   71 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH-HHH------SSSEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC-ccc------CCCeeEE
Confidence            799999999999999988732  37999999999999999999887655  689999999774 332      5799999


Q ss_pred             EEeCC------CcccHHHHHHHHhccCCCe
Q 029803          101 FVDAD------KDNYCNYHERLMKLLKVGG  124 (187)
Q Consensus       101 ~~d~~------~~~~~~~~~~~~~~L~~gG  124 (187)
                      ++...      .+....+++++.++|+|||
T Consensus        72 ~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   72 VCSGLSLHHLSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             EE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred             EEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence            99432      2345678999999999998

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.53  E-value=1.4e-14  Score=94.20  Aligned_cols=92  Identities=24%  Similarity=0.310  Sum_probs=73.3

Q ss_pred             EEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEe
Q 029803           24 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD  103 (187)
Q Consensus        24 LeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d  103 (187)
                      ||+|||+|..+..+++. + ..+++++|+++++++.++++...    ..+.+.++|+.+. +      ..+++||+|++.
T Consensus         1 LdiG~G~G~~~~~l~~~-~-~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l-~------~~~~sfD~v~~~   67 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-G-GASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDL-P------FPDNSFDVVFSN   67 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-T-TCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSS-S------S-TT-EEEEEEE
T ss_pred             CEecCcCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhC-c------cccccccccccc
Confidence            79999999999999987 3 78999999999999999998754    3356899997664 2      135899999987


Q ss_pred             CC---CcccHHHHHHHHhccCCCeEEEE
Q 029803          104 AD---KDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus       104 ~~---~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..   .++...+++++.+.|||||++++
T Consensus        68 ~~~~~~~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   68 SVLHHLEDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence            52   35677899999999999999985

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.53  E-value=2.4e-13  Score=105.74  Aligned_cols=115  Identities=20%  Similarity=0.285  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHHHH-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            5 TIHGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         5 ~~~~~ll~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      +.+...|..+-+. .++++|||+|||+|..++..++. . ..+|+++|++|.+++.|++|+..+++..++.+.  ...+.
T Consensus       146 ~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~  221 (295)
T PF06325_consen  146 PTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDL  221 (295)
T ss_dssp             HHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCT
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Eeccc
Confidence            3455566666664 45689999999999999988875 3 468999999999999999999999998877663  11111


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                               ...+||+|+.+-...-....+..+.++|+|||+++++.++
T Consensus       222 ---------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlSGIl  261 (295)
T PF06325_consen  222 ---------VEGKFDLVVANILADVLLELAPDIASLLKPGGYLILSGIL  261 (295)
T ss_dssp             ---------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred             ---------ccccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEcccc
Confidence                     1379999998866666677788888999999999998766

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.53  E-value=4e-14  Score=103.31  Aligned_cols=98  Identities=23%  Similarity=0.266  Sum_probs=85.2

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|+|+|||.|.++..+++..| .+.++++|.|++|++.|+...      .+.++..+|+.++-+        ..+
T Consensus        28 ~~~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p--------~~~   92 (257)
T COG4106          28 LERPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKP--------EQP   92 (257)
T ss_pred             ccccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCC--------CCc
Confidence            55788999999999999999999998 899999999999999997764      358899999877633        368


Q ss_pred             eeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .|++|.++   +-++....+.+++..|.|||+|.++
T Consensus        93 ~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQ  128 (257)
T COG4106          93 TDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQ  128 (257)
T ss_pred             cchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEE
Confidence            99999885   4567778999999999999999885

>PLN02823 spermine synthase

Probab=99.53  E-value=6.3e-13  Score=105.36  Aligned_cols=106  Identities=18%  Similarity=0.190  Sum_probs=86.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC---CCCcEEEEEcchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---VDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ..+|++||.||+|.|..+.++++..+ ..+++.+|++++.++.+++++...+   ..++++++.+|+..++...      
T Consensus       101 ~~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~------  173 (336)
T PLN02823        101 HPNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR------  173 (336)
T ss_pred             CCCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC------
Confidence            44789999999999999999988643 5799999999999999999986432   2468999999999988652      


Q ss_pred             CCceeEEEEeCCCc---------ccHHHHH-HHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKD---------NYCNYHE-RLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~---------~~~~~~~-~~~~~L~~gG~lv~~  129 (187)
                      .++||+||+|...+         ...++++ .+.+.|+|||++++.
T Consensus       174 ~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        174 DEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             CCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            47899999995321         1346787 889999999999885

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.53  E-value=9.4e-14  Score=115.97  Aligned_cols=101  Identities=19%  Similarity=0.315  Sum_probs=83.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      +.+|||+|||+|..++.++...+ +.+++++|+|+.+++.|++|+..+++.++++++++|..+.++        .++||+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p-~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~--------~~~fDl  209 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELP-NANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIE--------KQKFDF  209 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCc--------CCCccE
Confidence            46899999999999999998876 789999999999999999999988887789999999865322        358999


Q ss_pred             EEEeCCC-----------------------------cccHHHHHHHHhccCCCeEEEEe
Q 029803          100 AFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus       100 i~~d~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+++...                             ..+..+++.+.+.|+|||.+++.
T Consensus       210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE  268 (506)
T PRK01544        210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE  268 (506)
T ss_pred             EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence            9986310                             11234567777899999999985

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.53  E-value=2.5e-13  Score=103.94  Aligned_cols=114  Identities=23%  Similarity=0.363  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            6 IHGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         6 ~~~~ll~~l~~~~--~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      .+..++..+....  ++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...++. +++++++|+.+.
T Consensus        72 ~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~  149 (251)
T TIGR03534        72 DTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEP  149 (251)
T ss_pred             ChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhcc
Confidence            3445555555433  445899999999999999999876 789999999999999999999988875 699999998763


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCc-----------------------------ccHHHHHHHHhccCCCeEEEEe
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKD-----------------------------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~-----------------------------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++        .++||+|+++....                             .+..+++.+.++|+|||.+++.
T Consensus       150 ~~--------~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~  216 (251)
T TIGR03534       150 LP--------GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE  216 (251)
T ss_pred             Cc--------CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            22        47899999864210                             0235678888999999999985

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.52  E-value=1.4e-13  Score=107.52  Aligned_cols=100  Identities=19%  Similarity=0.276  Sum_probs=81.4

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...++.+|||+|||+|..+.+++..   +.+|+++|+++.+++.++++....++  ++++...|..+..  +      .+
T Consensus       117 ~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~--~------~~  183 (287)
T PRK12335        117 QTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSAS--I------QE  183 (287)
T ss_pred             hccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhccc--c------cC
Confidence            3456789999999999999999874   57999999999999999999888776  4888888875421  1      37


Q ss_pred             ceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEE
Q 029803           96 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        96 ~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +||+|++..     ..+....+++++.+.|+|||++++
T Consensus       184 ~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~  221 (287)
T PRK12335        184 EYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI  221 (287)
T ss_pred             CccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            899998764     223567789999999999999665

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.52  E-value=6.2e-13  Score=97.07  Aligned_cols=120  Identities=22%  Similarity=0.296  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHH-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            6 IHGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         6 ~~~~ll~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      ....+...+-.. .++.++||+.||+|..+++.++..  ..+|+.+|.+++.+...++|++..+..++++++.+|+...+
T Consensus        28 vrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRG--A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l  105 (183)
T PF03602_consen   28 VREALFNILQPRNLEGARVLDLFAGSGALGLEALSRG--AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFL  105 (183)
T ss_dssp             HHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHH
T ss_pred             HHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcC--CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHH
Confidence            344555666556 789999999999999999988764  36999999999999999999999998888999999999887


Q ss_pred             HHHhhcccCCCceeEEEEeCCCc--c-cHHHHHHHH--hccCCCeEEEEeC
Q 029803           85 DQLLKYSENEGSFDYAFVDADKD--N-YCNYHERLM--KLLKVGGIAVYDN  130 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~--~-~~~~~~~~~--~~L~~gG~lv~~~  130 (187)
                      ......   ..+||+||+|+...  . +...++.+.  .+|+++|++++..
T Consensus       106 ~~~~~~---~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~  153 (183)
T PF03602_consen  106 LKLAKK---GEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEH  153 (183)
T ss_dssp             HHHHHC---TS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred             Hhhccc---CCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence            765322   57999999997543  2 356777776  7999999999963

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.51  E-value=1e-13  Score=106.96  Aligned_cols=113  Identities=19%  Similarity=0.257  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      ..++.. +...++.+|||||||+|..+..++...  +.+|+++|+++.+++.+++++..   .+++.+..+|+.+. + +
T Consensus        42 ~~~l~~-l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~-~-~  113 (263)
T PTZ00098         42 TKILSD-IELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKK-D-F  113 (263)
T ss_pred             HHHHHh-CCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcccC-C-C
Confidence            334433 245677899999999999999988753  57999999999999999988653   34689999997642 1 1


Q ss_pred             hhcccCCCceeEEEEeC---C--CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           88 LKYSENEGSFDYAFVDA---D--KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~---~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                           ..++||+|++..   .  ..+...+++++.++|+|||.+++.+...
T Consensus       114 -----~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~  159 (263)
T PTZ00098        114 -----PENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCA  159 (263)
T ss_pred             -----CCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence                 247899999842   1  1356778999999999999999987654

>PRK08317 hypothetical protein; Provisional

Probab=99.51  E-value=6.6e-13  Score=100.52  Aligned_cols=115  Identities=19%  Similarity=0.333  Sum_probs=89.5

Q ss_pred             HHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029803           11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY   90 (187)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   90 (187)
                      +...+...++.+|||+|||+|..+..++..+++.++++++|+++.+++.++++..  ....++++..+|+.+. + +   
T Consensus        11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~-~-~---   83 (241)
T PRK08317         11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGL-P-F---   83 (241)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccC-C-C---
Confidence            3344456678899999999999999999887447899999999999999998833  2234688998887542 1 1   


Q ss_pred             ccCCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803           91 SENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWG  134 (187)
Q Consensus        91 ~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                        ..++||+|++..   ...+...+++++.++|+|||.+++.+..+.
T Consensus        84 --~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  128 (241)
T PRK08317         84 --PDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWD  128 (241)
T ss_pred             --CCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCC
Confidence              247899999874   234567789999999999999998765543

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.51  E-value=4.8e-13  Score=103.55  Aligned_cols=109  Identities=24%  Similarity=0.383  Sum_probs=85.2

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcccC
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ....++++||++.|++|.+++..+..-  ..+|+++|.|..+++.+++|+..+++. .+++++.+|+++.+..+..    
T Consensus       119 ~~~~~gkrvLnlFsYTGgfsv~Aa~gG--A~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~----  192 (286)
T PF10672_consen  119 RKYAKGKRVLNLFSYTGGFSVAAAAGG--AKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKK----  192 (286)
T ss_dssp             HHHCTTCEEEEET-TTTHHHHHHHHTT--ESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHH----
T ss_pred             HHHcCCCceEEecCCCCHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhc----
Confidence            345678999999999999999877642  358999999999999999999999986 6899999999998877543    


Q ss_pred             CCceeEEEEeCCC---------cccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADK---------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~---------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++||+|++|+..         ..|...+..+.++|+|||+|++.
T Consensus       193 ~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~  237 (286)
T PF10672_consen  193 GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC  237 (286)
T ss_dssp             TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            3699999999632         34667888889999999998764

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.50  E-value=5.4e-13  Score=106.92  Aligned_cols=103  Identities=24%  Similarity=0.313  Sum_probs=86.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ....+||||||+|..+..+|...| +..++++|+++.+++.+.+++...++. ++.++++|+...+..+     ..+++|
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ll~~~-----~~~s~D  194 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARLLLELL-----PSNSVE  194 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHhhhhC-----CCCcee
Confidence            456899999999999999999986 889999999999999999999988886 5999999998765443     357999


Q ss_pred             EEEEeCCCc---c------cHHHHHHHHhccCCCeEEEE
Q 029803           99 YAFVDADKD---N------YCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        99 ~i~~d~~~~---~------~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|++....+   .      ...+++.+.++|+|||.+.+
T Consensus       195 ~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l  233 (390)
T PRK14121        195 KIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLEL  233 (390)
T ss_pred             EEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEE
Confidence            999864211   1      25789999999999999887

>PRK14968 putative methyltransferase; Provisional

Probab=99.50  E-value=5e-13  Score=97.86  Aligned_cols=110  Identities=16%  Similarity=0.215  Sum_probs=85.5

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCc-EEEEEcchHHHHHHH
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLDQL   87 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~   87 (187)
                      .++...+...++++|||+|||+|.++..++..   +.+++++|.++++++.+++++...++.++ +.++++|..+.+.  
T Consensus        13 ~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--   87 (188)
T PRK14968         13 FLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFR--   87 (188)
T ss_pred             HHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccccc--
Confidence            33444444567889999999999999999886   57999999999999999999988777544 8888888765322  


Q ss_pred             hhcccCCCceeEEEEeCCCc------------------------ccHHHHHHHHhccCCCeEEEEe
Q 029803           88 LKYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                            ..+||+|+++....                        ....+++++.+.|+|||.+++.
T Consensus        88 ------~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~  147 (188)
T PRK14968         88 ------GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLL  147 (188)
T ss_pred             ------ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                  24899999864210                        1345789999999999988764

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.50  E-value=1.9e-12  Score=95.08  Aligned_cols=113  Identities=11%  Similarity=-0.021  Sum_probs=87.5

Q ss_pred             HHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029803           12 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS   91 (187)
Q Consensus        12 ~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   91 (187)
                      ..+....++.++||++||+|..++.+++...  .+|+++|.++++++.+++|++.++..++++++++|+.+.+..+... 
T Consensus        42 ~~l~~~~~g~~vLDLfaGsG~lglea~srga--~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~-  118 (189)
T TIGR00095        42 NILRPEIQGAHLLDVFAGSGLLGEEALSRGA--KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKK-  118 (189)
T ss_pred             HHHHHhcCCCEEEEecCCCcHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhcc-
Confidence            3333344788999999999999999998643  4899999999999999999999888777999999998876654211 


Q ss_pred             cCCCceeEEEEeCCC--cccHHHHHHHH--hccCCCeEEEEe
Q 029803           92 ENEGSFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYD  129 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~--~~~~~~~~~~~--~~L~~gG~lv~~  129 (187)
                        ...||+||.|+..  ..+...++.+.  .+|+++|++++.
T Consensus       119 --~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E  158 (189)
T TIGR00095       119 --PTFDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVE  158 (189)
T ss_pred             --CCCceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEE
Confidence              2358999999743  23444555554  479999999986

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.50  E-value=4.3e-14  Score=102.42  Aligned_cols=143  Identities=18%  Similarity=0.265  Sum_probs=92.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .+-.++||+|||.|.++..+|...   .+++++|+++.+++.|++++...   .++++.+.+..+..+        .++|
T Consensus        42 ~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P--------~~~F  107 (201)
T PF05401_consen   42 RRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWP--------EGRF  107 (201)
T ss_dssp             SSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT-----------SS-E
T ss_pred             cccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCC--------CCCe
Confidence            344689999999999999999875   49999999999999999988643   469999999977644        4899


Q ss_pred             eEEEEeC-----C-CcccHHHHHHHHhccCCCeEEEEeCCC-----CCccccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 029803           98 DYAFVDA-----D-KDNYCNYHERLMKLLKVGGIAVYDNTL-----WGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD  166 (187)
Q Consensus        98 D~i~~d~-----~-~~~~~~~~~~~~~~L~~gG~lv~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  166 (187)
                      |+|++.-     . ......+++.+...|+|||.+|+-...     ..|+..           + ..-.++-|.+.+..-
T Consensus       108 DLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~-----------g-a~tv~~~~~~~~~~~  175 (201)
T PF05401_consen  108 DLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAA-----------G-AETVLEMLQEHLTEV  175 (201)
T ss_dssp             EEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--------------HHHHHHHHHHHSEEE
T ss_pred             eEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCccc-----------c-hHHHHHHHHHHhhhe
Confidence            9999873     1 234556788889999999999984321     112111           1 222345556666554


Q ss_pred             CCeEEEeeecCCceEEEEEc
Q 029803          167 PRVQLSHVALGDGITICRRI  186 (187)
Q Consensus       167 ~~~~~~~lp~~~G~~~~~~~  186 (187)
                      .+++..--..+..-.+++-+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~  195 (201)
T PF05401_consen  176 ERVECRGGSPNEDCLLARFR  195 (201)
T ss_dssp             EEEEEE-SSTTSEEEEEEEE
T ss_pred             eEEEEcCCCCCCceEeeeec
Confidence            44444444455555555543

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.49  E-value=4.8e-13  Score=101.41  Aligned_cols=109  Identities=17%  Similarity=0.280  Sum_probs=88.4

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..++...++..+++++|+++.+++.+++++...+...+++++.+|+.+...       ..++
T Consensus        49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-------~~~~  121 (239)
T PRK00216         49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-------PDNS  121 (239)
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC-------CCCC
Confidence            335689999999999999999988754689999999999999999998776666678999999865321       2468


Q ss_pred             eeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           97 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ||+|++..   ........++.+.++|+|||.+++.+..
T Consensus       122 ~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~  160 (239)
T PRK00216        122 FDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFS  160 (239)
T ss_pred             ccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEec
Confidence            99998764   3345678899999999999999875543

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.49  E-value=5.9e-13  Score=105.44  Aligned_cols=107  Identities=15%  Similarity=0.168  Sum_probs=81.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++++|||||||+|+.+..++...+  .+|+++|+++.++..++..-...+...+++++.+++.+. +.       .++|
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~--~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l-p~-------~~~F  190 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGA--KLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL-PA-------LKAF  190 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC-CC-------cCCc
Confidence            4678999999999999999988643  479999999988876554333333344699999988654 21       3789


Q ss_pred             eEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803           98 DYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWG  134 (187)
Q Consensus        98 D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      |+|++.+   +..+....++++.+.|+|||.++++.....
T Consensus       191 D~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~  230 (322)
T PRK15068        191 DTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVID  230 (322)
T ss_pred             CEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEec
Confidence            9999864   234567889999999999999999765443

>PRK06922 hypothetical protein; Provisional

Probab=99.49  E-value=6.3e-13  Score=111.92  Aligned_cols=114  Identities=16%  Similarity=0.228  Sum_probs=88.8

Q ss_pred             HHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029803           12 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS   91 (187)
Q Consensus        12 ~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   91 (187)
                      ..+....++.+|||+|||+|..+..++...+ +.+++++|+++.+++.++++....+  .+++++++|+.+. +..    
T Consensus       411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dL-p~~----  482 (677)
T PRK06922        411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINL-SSS----  482 (677)
T ss_pred             HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhC-ccc----
Confidence            4455566889999999999999999988776 8999999999999999998876544  3588899998763 221    


Q ss_pred             cCCCceeEEEEeCC----------------CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           92 ENEGSFDYAFVDAD----------------KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        92 ~~~~~~D~i~~d~~----------------~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ..+++||+|++...                ......+++++.+.|||||.+++.+...
T Consensus       483 fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~  540 (677)
T PRK06922        483 FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM  540 (677)
T ss_pred             cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence            12478999987521                1234678999999999999999976543

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.49  E-value=9.1e-15  Score=96.42  Aligned_cols=96  Identities=24%  Similarity=0.347  Sum_probs=62.3

Q ss_pred             EEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEe
Q 029803           24 IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVD  103 (187)
Q Consensus        24 LeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d  103 (187)
                      ||||||+|..+..++..++ ..+++++|+|+.+++.+++++....... ......+..+.....     ..++||+|++.
T Consensus         1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~~~fD~V~~~   73 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGNDN-FERLRFDVLDLFDYD-----PPESFDLVVAS   73 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CC-----C----SEEEEE
T ss_pred             CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeecCChhhcc-----cccccceehhh
Confidence            7999999999999999986 8999999999999999999998876543 333333333322211     12599999987


Q ss_pred             C---CCcccHHHHHHHHhccCCCeEE
Q 029803          104 A---DKDNYCNYHERLMKLLKVGGIA  126 (187)
Q Consensus       104 ~---~~~~~~~~~~~~~~~L~~gG~l  126 (187)
                      .   +.+.....++++.++|+|||+|
T Consensus        74 ~vl~~l~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   74 NVLHHLEDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred             hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence            4   2356678999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.48  E-value=9e-13  Score=101.02  Aligned_cols=114  Identities=15%  Similarity=0.090  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHc----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            6 IHGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         6 ~~~~ll~~l~~~~----~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      .+..++.......    ++.+|||+|||+|..++.++...+ +.+++++|+++.+++.+++|+..++    .+++++|..
T Consensus        69 ~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~  143 (251)
T TIGR03704        69 RTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG----GTVHEGDLY  143 (251)
T ss_pred             cHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeech
Confidence            3444444444322    245899999999999999998776 6799999999999999999998755    368899987


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCCc-----------------------------ccHHHHHHHHhccCCCeEEEEe
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDADKD-----------------------------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~~~-----------------------------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.++...     .++||+|+++....                             .+..+++.+.++|+|||.+++.
T Consensus       144 ~~l~~~~-----~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~  215 (251)
T TIGR03704       144 DALPTAL-----RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE  215 (251)
T ss_pred             hhcchhc-----CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            6544311     35799999985211                             0235677777999999999985

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.48  E-value=6.6e-13  Score=107.12  Aligned_cols=117  Identities=16%  Similarity=0.212  Sum_probs=89.0

Q ss_pred             cHHHHHHHHHHHHH-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            4 LTIHGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         4 ~~~~~~ll~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      .+.+..++..+... .++.+|||+|||+|..++.++...+ +.+++++|+|+++++.+++|++..+.  +++++++|..+
T Consensus       235 RpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e  311 (423)
T PRK14966        235 RPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFD  311 (423)
T ss_pred             CccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhc
Confidence            35566777766553 3557999999999999999988766 78999999999999999999987764  69999999865


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCC----------------------------cccHHHHHHHHhccCCCeEEEEe
Q 029803           83 VLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ....      ..++||+|++++..                            ..+..+++.+.+.|+|||.+++.
T Consensus       312 ~~l~------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilE  380 (423)
T PRK14966        312 TDMP------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLE  380 (423)
T ss_pred             cccc------cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            3110      13579999997521                            01234566667899999998874

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.48  E-value=5.1e-13  Score=106.31  Aligned_cols=115  Identities=17%  Similarity=0.173  Sum_probs=92.4

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      .+..+..+..++...++.+|||+|||+|..++.++..   +.+++++|+++.++..+++|++.+++.+ +++.++|+.+.
T Consensus       167 ~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l  242 (329)
T TIGR01177       167 DPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKL  242 (329)
T ss_pred             CHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcC
Confidence            4556666666677778889999999999998887653   6799999999999999999999988876 88999998763


Q ss_pred             HHHHhhcccCCCceeEEEEeCCC------------cccHHHHHHHHhccCCCeEEEEe
Q 029803           84 LDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       +.      ..++||+|++|...            ..+..+++.+.+.|+|||.+++.
T Consensus       243 -~~------~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~  293 (329)
T TIGR01177       243 -PL------SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYA  293 (329)
T ss_pred             -Cc------ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEE
Confidence             21      14689999998421            11567889999999999998874

This family is found exclusively in the Archaea.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.47  E-value=3.6e-13  Score=112.13  Aligned_cols=113  Identities=18%  Similarity=0.254  Sum_probs=88.1

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      .++..+ ...++.+|||||||+|..+..++...  +.+++++|+++++++.|+++..  +...++++.++|..+..  + 
T Consensus       257 ~l~~~~-~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~--~-  328 (475)
T PLN02336        257 EFVDKL-DLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT--Y-  328 (475)
T ss_pred             HHHHhc-CCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC--C-
Confidence            344433 24567899999999999999998865  5799999999999999998865  33457899999986531  1 


Q ss_pred             hcccCCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           89 KYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                          ..++||+|++..   +..+...+++++.+.|+|||.+++.+...
T Consensus       329 ----~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~  372 (475)
T PLN02336        329 ----PDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR  372 (475)
T ss_pred             ----CCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence                246899999864   33456789999999999999999987654

>PRK14967 putative methyltransferase; Provisional

Probab=99.47  E-value=1.1e-12  Score=98.93  Aligned_cols=100  Identities=17%  Similarity=0.199  Sum_probs=79.4

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..+..+|||+|||+|..+..++.. + ..+++++|+++++++.+++++...+.  +++++++|..+.++        .++
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~--------~~~  101 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE--------FRP  101 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc--------CCC
Confidence            345679999999999999998874 2 35999999999999999999987765  48888998866422        368


Q ss_pred             eeEEEEeCCCc------------------------ccHHHHHHHHhccCCCeEEEE
Q 029803           97 FDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        97 ~D~i~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ||+|+++....                        .+..+++++.++|++||.+++
T Consensus       102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~  157 (223)
T PRK14967        102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL  157 (223)
T ss_pred             eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            99999984210                        024567888899999999987

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=99.47  E-value=3.3e-12  Score=98.81  Aligned_cols=106  Identities=23%  Similarity=0.314  Sum_probs=91.1

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ..+|++||-||.|.|..+.++++..+ -.+++.+|++++.++.+++.+....  . .+|++++.+|..+++...      
T Consensus        74 h~~pk~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------  146 (282)
T COG0421          74 HPNPKRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------  146 (282)
T ss_pred             CCCCCeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------
Confidence            44668999999999999999999876 7899999999999999999988644  2 378999999999998874      


Q ss_pred             CCceeEEEEeCCCc-c------cHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKD-N------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~-~------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++||+|++|.... .      ...+++.|.+.|+++|+++..
T Consensus       147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            35899999997432 2      368999999999999999986

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.47  E-value=5.7e-13  Score=106.17  Aligned_cols=109  Identities=19%  Similarity=0.232  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      +..++..+.. ....+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++.+++.  .+++.+|..+.   
T Consensus       185 t~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~---  257 (342)
T PRK09489        185 SQLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD---  257 (342)
T ss_pred             HHHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc---
Confidence            3444554433 3456899999999999999998876 789999999999999999999988764  46677776542   


Q ss_pred             HhhcccCCCceeEEEEeCCC--------cccHHHHHHHHhccCCCeEEEE
Q 029803           87 LLKYSENEGSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .      .++||+|+++...        .....+++.+.+.|+|||.+++
T Consensus       258 ~------~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~i  301 (342)
T PRK09489        258 I------KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRI  301 (342)
T ss_pred             c------CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEE
Confidence            1      3689999997532        2246789999999999998866

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.47  E-value=5.4e-13  Score=103.53  Aligned_cols=114  Identities=24%  Similarity=0.379  Sum_probs=87.2

Q ss_pred             HHHHHHHHHH---HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            6 IHGQLMAMLL---RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         6 ~~~~ll~~l~---~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      .+..++..+.   ...++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++. .....+++++++|..+
T Consensus        92 ~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~  169 (275)
T PRK09328         92 ETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFE  169 (275)
T ss_pred             CcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccC
Confidence            3444555444   244678999999999999999999886 7899999999999999999987 3344579999999854


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCC-----------------------------cccHHHHHHHHhccCCCeEEEEe
Q 029803           83 VLDQLLKYSENEGSFDYAFVDADK-----------------------------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~~-----------------------------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++        .++||+|+++...                             ..+..+++++.++|+|||.+++.
T Consensus       170 ~~~--------~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e  237 (275)
T PRK09328        170 PLP--------GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE  237 (275)
T ss_pred             cCC--------CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence            321        3689999986321                             11345677778999999999984

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=4.9e-12  Score=98.28  Aligned_cols=116  Identities=19%  Similarity=0.334  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHH-HHc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            5 TIHGQLMAMLL-RLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         5 ~~~~~ll~~l~-~~~-~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      +.+..++..+. ... .+.+|||+|||+|..++.++...+ ..+|+++|+|+++++.|++|+..+++ .++.++.+|.++
T Consensus        94 ~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~  171 (280)
T COG2890          94 PDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFE  171 (280)
T ss_pred             CchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeeccc
Confidence            45556666643 111 222799999999999999999987 78999999999999999999999998 567777776655


Q ss_pred             HHHHHhhcccCCCceeEEEEeCC---Cc-------------------------ccHHHHHHHHhccCCCeEEEEeCC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDAD---KD-------------------------NYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~---~~-------------------------~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+         .++||+|++++.   .+                         .+..+++++...|+|||++++.-.
T Consensus       172 ~~---------~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g  239 (280)
T COG2890         172 PL---------RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG  239 (280)
T ss_pred             cc---------CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence            32         358999998741   01                         123567777789999999998633

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.45  E-value=4.5e-13  Score=102.71  Aligned_cols=97  Identities=15%  Similarity=0.235  Sum_probs=76.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..++..   +.+++++|+++++++.++++..      ...++++|+.+. + +     ..++|
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~-~-~-----~~~~f  104 (251)
T PRK10258         41 RKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESL-P-L-----ATATF  104 (251)
T ss_pred             cCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccC-c-C-----CCCcE
Confidence            35679999999999998888763   5799999999999999988742      245778887553 1 1     24689


Q ss_pred             eEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           98 DYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        98 D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      |+|++..   +..+....+.++.+.|+|||.+++..
T Consensus       105 D~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~  140 (251)
T PRK10258        105 DLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTT  140 (251)
T ss_pred             EEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence            9999874   33466788999999999999999864

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.45  E-value=1.4e-12  Score=97.01  Aligned_cols=103  Identities=18%  Similarity=0.231  Sum_probs=77.3

Q ss_pred             HHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      +....++.+|||+|||+|..+..++...+ +.+++++|+++++++.|++++.      .+++.++|+.+..        .
T Consensus        38 l~~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~~~--------~  102 (204)
T TIGR03587        38 LNRLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFDPF--------K  102 (204)
T ss_pred             HHhcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccCCC--------C
Confidence            33455778999999999999999988765 7899999999999999988642      3667788876521        2


Q ss_pred             CCceeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           94 EGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        94 ~~~~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .++||+|++....     ......++++.+.+  ++++++.+...
T Consensus       103 ~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~  145 (204)
T TIGR03587       103 DNFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYN  145 (204)
T ss_pred             CCCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence            5799999986532     23456778888876  45777766543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.45  E-value=4.7e-12  Score=100.19  Aligned_cols=102  Identities=12%  Similarity=0.061  Sum_probs=81.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..++.++..   +.+|+++|.++++++.|+++++.+++ ++++++++|+.+.....      .+.|
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~------~~~~  241 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQ------GEVP  241 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhc------CCCC
Confidence            46789999999999999999984   57999999999999999999999888 46999999998765432      3579


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++|.........+...+..++|++++.++
T Consensus       242 D~Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvs  273 (315)
T PRK03522        242 DLVLVNPPRRGIGKELCDYLSQMAPRFILYSS  273 (315)
T ss_pred             eEEEECCCCCCccHHHHHHHHHcCCCeEEEEE
Confidence            99999976555444444444557788777664

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.45  E-value=1.2e-12  Score=99.15  Aligned_cols=101  Identities=21%  Similarity=0.346  Sum_probs=81.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|.++..++...+ ..+++++|+++++++.++++..     .++.++.+|..+..  +     ..++|
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~--~-----~~~~f   99 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLP--L-----EDSSF   99 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCC--C-----CCCce
Confidence            3457999999999999999999876 7789999999999998887653     35788999986531  1     24789


Q ss_pred             eEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           98 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        98 D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |+|++...   ..+....++++.++|+|||.+++...
T Consensus       100 D~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~  136 (240)
T TIGR02072       100 DLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF  136 (240)
T ss_pred             eEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence            99998752   23567789999999999999998643

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=1.4e-12  Score=100.46  Aligned_cols=110  Identities=22%  Similarity=0.244  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      +.-|+..+...... +|||+|||.|..++.+++..| ..+++.+|.+..+++.+++|+..++..+. .++..|..+..  
T Consensus       147 S~lLl~~l~~~~~~-~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~-~v~~s~~~~~v--  221 (300)
T COG2813         147 SRLLLETLPPDLGG-KVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVENT-EVWASNLYEPV--  221 (300)
T ss_pred             HHHHHHhCCccCCC-cEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCCcc-EEEEecccccc--
Confidence            44555565555444 999999999999999999987 89999999999999999999999887753 77888876543  


Q ss_pred             HhhcccCCCceeEEEEeCCC----ccc----HHHHHHHHhccCCCeEEEE
Q 029803           87 LLKYSENEGSFDYAFVDADK----DNY----CNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~~----~~~----~~~~~~~~~~L~~gG~lv~  128 (187)
                             .++||+|++++..    .-.    ..+++.+.+.|++||-|.+
T Consensus       222 -------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~i  264 (300)
T COG2813         222 -------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWI  264 (300)
T ss_pred             -------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEE
Confidence                   2589999998632    112    3788889999999998766

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.45  E-value=6.8e-13  Score=96.94  Aligned_cols=112  Identities=17%  Similarity=0.251  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      +....++.. ++..++.++||+|||.|..++++|+.   +..|+++|.++..++.+++..+..+++  ++....|..+..
T Consensus        17 ~~hs~v~~a-~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~   90 (192)
T PF03848_consen   17 PTHSEVLEA-VPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFD   90 (192)
T ss_dssp             ---HHHHHH-CTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS
T ss_pred             CCcHHHHHH-HhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcc
Confidence            334444443 56678899999999999999999986   789999999999999999988888875  888888875531


Q ss_pred             HHHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           85 DQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                        +      .+.||+|++..     ..+..+..++.+.+.++|||++++..
T Consensus        91 --~------~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen   91 --F------PEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             ---------TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --c------cCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence              1      36899998752     34556778899999999999988843

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR00452 methyltransferase, putative

Probab=99.44  E-value=1.2e-12  Score=102.96  Aligned_cols=109  Identities=14%  Similarity=0.109  Sum_probs=80.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++++|||||||+|+.+..++...+  ..|+++|+++.++..++..-.......++.+..++..+. +.       ..+
T Consensus       119 ~~~g~~VLDvGCG~G~~~~~~~~~g~--~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~l-p~-------~~~  188 (314)
T TIGR00452       119 PLKGRTILDVGCGSGYHMWRMLGHGA--KSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQL-HE-------LYA  188 (314)
T ss_pred             CCCCCEEEEeccCCcHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHC-CC-------CCC
Confidence            35678999999999999888887532  479999999998876543322223334678888887553 21       358


Q ss_pred             eeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           97 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        97 ~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      ||+||+.+   +..+....++++.+.|+|||.+++......+
T Consensus       189 FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g  230 (314)
T TIGR00452       189 FDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDG  230 (314)
T ss_pred             cCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence            99999875   2345668999999999999999997655433

Known examples to date are restricted to the proteobacteria.

>PRK03612 spermidine synthase; Provisional

Probab=99.43  E-value=1.7e-12  Score=108.98  Aligned_cols=107  Identities=19%  Similarity=0.320  Sum_probs=85.2

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHH--HHhc---CC-CCcEEEEEcchHHHHHHHhhc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI--IKKA---GV-DHKINFIESEALSVLDQLLKY   90 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~---~~-~~~~~~~~~d~~~~~~~~~~~   90 (187)
                      ..++++||+||||+|..+.++++. +...+++++|+++++++.++++  +...   .. .++++++.+|+.+.+...   
T Consensus       295 ~~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~---  370 (521)
T PRK03612        295 SARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL---  370 (521)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC---
Confidence            467899999999999999999875 4247999999999999999994  3321   12 258999999999877653   


Q ss_pred             ccCCCceeEEEEeCCCcc--------cHHHHHHHHhccCCCeEEEEeC
Q 029803           91 SENEGSFDYAFVDADKDN--------YCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~~~--------~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                         .++||+|++|...+.        ..++++.+.+.|+|||+++++.
T Consensus       371 ---~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        371 ---AEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             ---CCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence               478999999963221        2468899999999999999863

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.43  E-value=2.4e-12  Score=104.20  Aligned_cols=102  Identities=17%  Similarity=0.215  Sum_probs=81.6

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...++.+|||||||+|..+..+++..  +.+|+++|+++++++.+++++.  +.  .+++..+|..+.          .+
T Consensus       164 ~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l----------~~  227 (383)
T PRK11705        164 QLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL----------NG  227 (383)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc----------CC
Confidence            34577899999999999999999865  5799999999999999999874  22  377888886542          36


Q ss_pred             ceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           96 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        96 ~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +||.|++..     ...++..+++.+.++|+|||++++.....
T Consensus       228 ~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~  270 (383)
T PRK11705        228 QFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGS  270 (383)
T ss_pred             CCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence            899998653     23445788999999999999999976543

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.43  E-value=2.2e-13  Score=102.17  Aligned_cols=100  Identities=19%  Similarity=0.216  Sum_probs=78.8

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC-----cEEEEEcchHHHHHHHhhcccCCC
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-----~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ++|||+|||+|-.+..||+.   +++|+++|.++++++.|+++.......+     ++++.+.++.+.          .+
T Consensus        91 ~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~----------~~  157 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL----------TG  157 (282)
T ss_pred             ceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc----------cc
Confidence            67999999999999999986   6799999999999999999944333322     255566665443          36


Q ss_pred             ceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           96 SFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        96 ~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .||.|++.-   +..+.+++++.+.++|+|||.+++....+
T Consensus       158 ~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinr  198 (282)
T KOG1270|consen  158 KFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINR  198 (282)
T ss_pred             ccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhh
Confidence            799999863   33456789999999999999999976543

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.43  E-value=2.7e-12  Score=96.36  Aligned_cols=106  Identities=21%  Similarity=0.329  Sum_probs=85.3

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..+++..+...+++++|+++.+++.+++++.   ...+++++.+|+.+..  +     ..++
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~--~-----~~~~  106 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP--F-----EDNS  106 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC--C-----CCCc
Confidence            4467899999999999999999988634799999999999999998875   3356889999987632  1     1468


Q ss_pred             eeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           97 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ||+|++..   ........++.+.++|+|||.+++.+..
T Consensus       107 ~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  145 (223)
T TIGR01934       107 FDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFS  145 (223)
T ss_pred             EEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEec
Confidence            99998763   3455677899999999999999886543

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.42  E-value=2e-12  Score=102.55  Aligned_cols=99  Identities=16%  Similarity=0.150  Sum_probs=79.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++.+|||||||+|..+..+++..+ ..+++++|+++++++.++++...    .+++++.+|+.+. + +     ..++||
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~l-p-~-----~~~sFD  180 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDL-P-F-----PTDYAD  180 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhC-C-C-----CCCcee
Confidence            567999999999999999988775 57999999999999999987642    3578899998653 1 1     246899


Q ss_pred             EEEEeCC---CcccHHHHHHHHhccCCCeEEEEe
Q 029803           99 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        99 ~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|++...   ..+....++++.+.|+|||.+++.
T Consensus       181 vVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi  214 (340)
T PLN02490        181 RYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLI  214 (340)
T ss_pred             EEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence            9998642   234567899999999999998774

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=99.42  E-value=1.6e-11  Score=93.76  Aligned_cols=107  Identities=19%  Similarity=0.221  Sum_probs=86.1

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC---CCcEEEEEcchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV---DHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ..+|++||-||.|.|..+.++++..+ ..+++.+|++|..++.+++.+.....   .++++++.+|+..++...      
T Consensus        74 ~~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~------  146 (246)
T PF01564_consen   74 HPNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET------  146 (246)
T ss_dssp             SSST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS------
T ss_pred             CCCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc------
Confidence            44799999999999999999987643 67999999999999999999875332   378999999999988764      


Q ss_pred             CC-ceeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEeC
Q 029803           94 EG-SFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        94 ~~-~~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .+ +||+|++|...+       ...++++.+.+.|+|||+++...
T Consensus       147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  147 QEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             SST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            34 899999996431       24689999999999999999863

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.42  E-value=7.8e-12  Score=103.14  Aligned_cols=121  Identities=18%  Similarity=0.214  Sum_probs=96.4

Q ss_pred             HHHHHHHHHH--HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            6 IHGQLMAMLL--RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         6 ~~~~ll~~l~--~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      ....+...++  ...++.+|||+|++.|.-+..+|..+...+.+++.|+++..+...++++++.|+. ++.+.+.|+...
T Consensus        98 ~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~  176 (470)
T PRK11933         98 ASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVF  176 (470)
T ss_pred             HHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhh
Confidence            3344444445  4568899999999999999999998876689999999999999999999999986 488999998765


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ...+      .+.||.|++|+..+.                         -..+++.++++|||||+||.+.+..
T Consensus       177 ~~~~------~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        177 GAAL------PETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             hhhc------hhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence            3332      367999999964321                         0357888889999999999987664

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.42  E-value=6.1e-12  Score=95.40  Aligned_cols=113  Identities=19%  Similarity=0.258  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      .+++.......++.+|||||||+|..+..+++.   ..+++++|+++.+++.+++++...+.  .+++..++..+.... 
T Consensus        37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~-  110 (233)
T PRK05134         37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAE-  110 (233)
T ss_pred             HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhh-
Confidence            345555555557789999999999999888874   46899999999999999999876654  477888887665422 


Q ss_pred             hhcccCCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           88 LKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                           ..++||+|++..   ...+....++.+.+.|+|||.+++...
T Consensus       111 -----~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~  152 (233)
T PRK05134        111 -----HPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL  152 (233)
T ss_pred             -----cCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence                 147899998863   233556788999999999999998643

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.41  E-value=5e-12  Score=94.57  Aligned_cols=105  Identities=17%  Similarity=0.245  Sum_probs=87.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCC-----CCEEEEEeCCcchHHHHHHHHHhcCCCCc--EEEEEcchHHHHHHHhhc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPE-----DGQITAIDVNRETYEIGLPIIKKAGVDHK--INFIESEALSVLDQLLKY   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~-----~~~v~~iD~~~~~~~~a~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~   90 (187)
                      .+..++||++||||..+.-+.+..+.     +.+|+.+|++|++++.++++..+.++...  +.++.+|+.+. + +   
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L-p-F---  173 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL-P-F---  173 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC-C-C---
Confidence            35578999999999999999998863     28999999999999999999877777644  88999999764 2 2   


Q ss_pred             ccCCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEe
Q 029803           91 SENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        91 ~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                        ...+||...+..   +..+.+..++++++.|||||.+.+-
T Consensus       174 --dd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cL  213 (296)
T KOG1540|consen  174 --DDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCL  213 (296)
T ss_pred             --CCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence              468999988875   4567788999999999999998763

>PTZ00146 fibrillarin; Provisional

Probab=99.40  E-value=3.6e-12  Score=98.48  Aligned_cols=106  Identities=16%  Similarity=0.116  Sum_probs=77.8

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..+..+|||+|||+|+++..++....+.++|+++|+++++.+...+.....   .++.++.+|+........    ..++
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~----~~~~  202 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRM----LVPM  202 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhc----ccCC
Confidence            567789999999999999999998866789999999987654444443321   358888899854211100    1357


Q ss_pred             eeEEEEeCCCcc-cHHHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|+||+|....+ ...++.++.+.|||||.+++.
T Consensus       203 vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        203 VDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence            999999975433 334566788999999999983

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.40  E-value=1.5e-11  Score=90.69  Aligned_cols=125  Identities=21%  Similarity=0.301  Sum_probs=96.5

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803           22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  101 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  101 (187)
                      .+||||||.|.+.+.+|...| +..++++|+....+..+.+++...++. ++.++++|+...+..+..    ++++|.|+
T Consensus        20 l~lEIG~G~G~~l~~~A~~~P-d~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~~l~~~~~----~~~v~~i~   93 (195)
T PF02390_consen   20 LILEIGCGKGEFLIELAKRNP-DINFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARELLRRLFP----PGSVDRIY   93 (195)
T ss_dssp             EEEEET-TTSHHHHHHHHHST-TSEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTTHHHHHST----TTSEEEEE
T ss_pred             eEEEecCCCCHHHHHHHHHCC-CCCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHHHHhhccc----CCchheEE
Confidence            899999999999999999987 899999999999999999999988886 699999999988887743    48999998


Q ss_pred             EeC---CCc--------ccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHHhhc-CCCe
Q 029803          102 VDA---DKD--------NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD-DPRV  169 (187)
Q Consensus       102 ~d~---~~~--------~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~  169 (187)
                      +..   ++.        ....+++.+.+.|+|||.|.+.            ++        .....+.+.+.+.. ++.|
T Consensus        94 i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~------------TD--------~~~y~~~~~~~~~~~~~~f  153 (195)
T PF02390_consen   94 INFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFA------------TD--------VEEYAEWMLEQFEESHPGF  153 (195)
T ss_dssp             EES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEE------------ES---------HHHHHHHHHHHHHHSTTE
T ss_pred             EeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEE------------eC--------CHHHHHHHHHHHHhcCcCe
Confidence            864   221        1367999999999999999773            11        22235555666666 5777


Q ss_pred             EEE
Q 029803          170 QLS  172 (187)
Q Consensus       170 ~~~  172 (187)
                      +..
T Consensus       154 ~~~  156 (195)
T PF02390_consen  154 ENI  156 (195)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            755

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.40  E-value=7.7e-12  Score=94.03  Aligned_cols=100  Identities=18%  Similarity=0.229  Sum_probs=79.9

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..++..   +.+++++|++++++..|++++...+...++++.++|+.+.          .++
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----------~~~  119 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL----------CGE  119 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC----------CCC
Confidence            346789999999999999999874   5699999999999999999998777656799999998653          268


Q ss_pred             eeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ||+|++...     .......++++.+++++++++.+.
T Consensus       120 fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~  157 (219)
T TIGR02021       120 FDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFA  157 (219)
T ss_pred             cCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence            999986421     223456788888888888777764

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.40  E-value=2.7e-12  Score=99.57  Aligned_cols=94  Identities=20%  Similarity=0.263  Sum_probs=73.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCC--CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPED--GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ++.+|||+|||+|+.+..++..++..  ..++++|+++.+++.|+++.      .++++..+|+.+. + +     ..++
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~l-p-~-----~~~s  151 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRL-P-F-----ADQS  151 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccC-C-C-----cCCc
Confidence            45789999999999999998876532  47999999999999998753      2477888887653 1 1     2478


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ||+|+....+    ..++++.+.|+|||++++.
T Consensus       152 fD~I~~~~~~----~~~~e~~rvLkpgG~li~~  180 (272)
T PRK11088        152 LDAIIRIYAP----CKAEELARVVKPGGIVITV  180 (272)
T ss_pred             eeEEEEecCC----CCHHHHHhhccCCCEEEEE
Confidence            9999976543    2457788999999999874

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.39  E-value=3.8e-12  Score=90.67  Aligned_cols=107  Identities=25%  Similarity=0.295  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHH-HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            6 IHGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         6 ~~~~ll~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      ....++..+.. ..++.+|||+|||.|.++..++..   +.+++++|+++.+++.          . +.....-+.....
T Consensus         8 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----------~-~~~~~~~~~~~~~   73 (161)
T PF13489_consen    8 AYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----------R-NVVFDNFDAQDPP   73 (161)
T ss_dssp             CHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----------T-TSEEEEEECHTHH
T ss_pred             HHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----------h-hhhhhhhhhhhhh
Confidence            34456666664 578899999999999999989764   4599999999998887          1 1222222111111


Q ss_pred             HHHhhcccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           85 DQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .       ..++||+|++...   ..+...+++.+.++|+|||++++.+...
T Consensus        74 ~-------~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~  118 (161)
T PF13489_consen   74 F-------PDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR  118 (161)
T ss_dssp             C-------HSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred             c-------cccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence            1       1589999998853   3456789999999999999999977653

...

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.39  E-value=1.4e-11  Score=101.77  Aligned_cols=104  Identities=14%  Similarity=0.159  Sum_probs=82.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..++.++..   ..+|+++|+++++++.|++|+..+++. +++++++|+.+.+....   ...++|
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~~~l~~~~---~~~~~f  368 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQ---AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLEEDFTDQP---WALGGF  368 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChHHhhhhhh---hhcCCC
Confidence            45679999999999999999986   359999999999999999999988875 59999999987654311   013579


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++|.........++.+.+ +++++++.++
T Consensus       369 D~Vi~dPPr~g~~~~~~~l~~-~~~~~ivyvS  399 (443)
T PRK13168        369 DKVLLDPPRAGAAEVMQALAK-LGPKRIVYVS  399 (443)
T ss_pred             CEEEECcCCcChHHHHHHHHh-cCCCeEEEEE
Confidence            999999866656666765544 6888888775

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.38  E-value=2.3e-11  Score=90.87  Aligned_cols=100  Identities=15%  Similarity=0.209  Sum_probs=73.2

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~   94 (187)
                      ..++.+|||||||+|.++..+++..++.++|+++|+++.           .+. ..++++++|+.+.  ++.+... ...
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~-~~v~~i~~D~~~~~~~~~i~~~-~~~  115 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPI-VGVDFLQGDFRDELVLKALLER-VGD  115 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCC-CCcEEEecCCCChHHHHHHHHH-hCC
Confidence            356779999999999999999998765689999999881           122 2488999998663  2322111 124


Q ss_pred             CceeEEEEeCCCc-------c-------cHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADKD-------N-------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~-------~-------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++||+|+++..+.       +       ....++.+.++|+|||.+++.
T Consensus       116 ~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        116 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             CCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            7899999975321       0       134678889999999999985

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.38  E-value=2.4e-11  Score=87.85  Aligned_cols=117  Identities=19%  Similarity=0.226  Sum_probs=91.7

Q ss_pred             HHHHHHHHHH-HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            7 HGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         7 ~~~ll~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      ...+...+.. ...+.++||+.+|+|..+++.++..  ..+++.+|.+...+...++|++..++..+.+++..|+...++
T Consensus        30 REalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG--A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~  107 (187)
T COG0742          30 REALFNILAPDEIEGARVLDLFAGSGALGLEALSRG--AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALK  107 (187)
T ss_pred             HHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC--CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHH
Confidence            3455555555 3788899999999999999998874  469999999999999999999999988899999999997777


Q ss_pred             HHhhcccCCCceeEEEEeCCCc--ccHHHHHHH----HhccCCCeEEEEe
Q 029803           86 QLLKYSENEGSFDYAFVDADKD--NYCNYHERL----MKLLKVGGIAVYD  129 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~----~~~L~~gG~lv~~  129 (187)
                      ....    .++||+||+|+...  .+.......    ..+|+|+|.++++
T Consensus       108 ~~~~----~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E  153 (187)
T COG0742         108 QLGT----REPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVE  153 (187)
T ss_pred             hcCC----CCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEE
Confidence            6521    23599999997543  221122222    2689999999996

>TIGR03438 probable methyltransferase

Probab=99.37  E-value=1.5e-11  Score=96.79  Aligned_cols=110  Identities=13%  Similarity=0.098  Sum_probs=79.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..+++.+++..+++++|+|+++++.+++++......-++..+++|..+.++-....  ......
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~--~~~~~~  140 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP--AAGRRL  140 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc--ccCCeE
Confidence            568999999999999999999876457999999999999999998875332235778899987643322000  011333


Q ss_pred             EEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           99 YAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        99 ~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +++++.     .......+++++.+.|+|||.+++.-
T Consensus       141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~  177 (301)
T TIGR03438       141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV  177 (301)
T ss_pred             EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            445443     22345578999999999999998743

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.37  E-value=3.1e-11  Score=97.56  Aligned_cols=101  Identities=14%  Similarity=0.105  Sum_probs=81.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..++.++..   ..+|+++|.++.+++.|++|++.+++. +++++.+|+.+.+...      ..+|
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~------~~~~  301 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQ------MSAP  301 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhc------CCCC
Confidence            45689999999999999999863   569999999999999999999998875 6999999998776432      2469


Q ss_pred             eEEEEeCCCcc-cHHHHHHHHhccCCCeEEEEe
Q 029803           98 DYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        98 D~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++|+.... ....++.+. .++|++++.++
T Consensus       302 D~vi~DPPr~G~~~~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       302 ELVLVNPPRRGIGKELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             CEEEECCCCCCCcHHHHHHHH-hcCCCeEEEEE
Confidence            99999976544 344555554 57898888774

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.36  E-value=4.5e-12  Score=94.77  Aligned_cols=105  Identities=11%  Similarity=0.048  Sum_probs=75.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-----------CCCCcEEEEEcchHHHHHH
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-----------GVDHKINFIESEALSVLDQ   86 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~   86 (187)
                      .++.+||++|||.|..++++|..   +..|+++|+++.+++.+.+.....           ....+++++++|+.+.-..
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~  109 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAA  109 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcc
Confidence            35679999999999999999975   789999999999999764321100           0123588999999775221


Q ss_pred             HhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           87 LLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .      .++||.|+-..     .++....+++.+.++|+|||++++...
T Consensus       110 ~------~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       110 D------LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             c------CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            1      25688876332     233456689999999999998666433

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.36  E-value=1.2e-11  Score=103.09  Aligned_cols=106  Identities=25%  Similarity=0.301  Sum_probs=80.1

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..++..   ..+|+++|+++++++.+++..   +...+++++++|+.+....+     ..++
T Consensus        35 ~~~~~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~-----~~~~  103 (475)
T PLN02336         35 PYEGKSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNI-----SDGS  103 (475)
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCC-----CCCC
Confidence            345679999999999999999986   359999999999998776532   22346899999985321111     2478


Q ss_pred             eeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           97 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        97 ~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ||+|++....     .....+++++.+.|+|||++++.+..+
T Consensus       104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~  145 (475)
T PLN02336        104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCF  145 (475)
T ss_pred             EEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            9999987522     224678899999999999999977654

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.35  E-value=3.7e-11  Score=98.97  Aligned_cols=104  Identities=15%  Similarity=0.123  Sum_probs=83.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..++.+++.   ..+|+++|+++++++.|++|+..+++. +++++.+|+.+.++.+..   ...+|
T Consensus       291 ~~~~~vLDl~cG~G~~sl~la~~---~~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~~~l~~~~~---~~~~~  363 (431)
T TIGR00479       291 QGEELVVDAYCGVGTFTLPLAKQ---AKSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLETVLPKQPW---AGQIP  363 (431)
T ss_pred             CCCCEEEEcCCCcCHHHHHHHHh---CCEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHHHHHHHHHh---cCCCC
Confidence            45679999999999999999986   358999999999999999999988875 699999999886655321   13579


Q ss_pred             eEEEEeCCCcc-cHHHHHHHHhccCCCeEEEEe
Q 029803           98 DYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        98 D~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++|..... ...+++.+. .++|++++.++
T Consensus       364 D~vi~dPPr~G~~~~~l~~l~-~l~~~~ivyvs  395 (431)
T TIGR00479       364 DVLLLDPPRKGCAAEVLRTII-ELKPERIVYVS  395 (431)
T ss_pred             CEEEECcCCCCCCHHHHHHHH-hcCCCEEEEEc
Confidence            99999976544 566666654 48898877663

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.34  E-value=1.1e-11  Score=93.54  Aligned_cols=121  Identities=16%  Similarity=0.227  Sum_probs=90.9

Q ss_pred             cHHHHHHHHHHHH------HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE
Q 029803            4 LTIHGQLMAMLLR------LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   77 (187)
Q Consensus         4 ~~~~~~ll~~l~~------~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~   77 (187)
                      .+++.+++...+.      ..++..+||+|||+|..++.++..++ .++++++|.++.++..|.+|+..+++.+++.+++
T Consensus       127 RpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~  205 (328)
T KOG2904|consen  127 RPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIH  205 (328)
T ss_pred             CccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEe
Confidence            3556666655554      34666899999999999999999998 8999999999999999999999999999999885


Q ss_pred             cch----HHHHHHHhhcccCCCceeEEEEeCC--------------------------Cc---ccHHHHHHHHhccCCCe
Q 029803           78 SEA----LSVLDQLLKYSENEGSFDYAFVDAD--------------------------KD---NYCNYHERLMKLLKVGG  124 (187)
Q Consensus        78 ~d~----~~~~~~~~~~~~~~~~~D~i~~d~~--------------------------~~---~~~~~~~~~~~~L~~gG  124 (187)
                      -+.    .+..+.      ..+++|+++++..                          .+   .+..++..+-++|+|||
T Consensus       206 ~~me~d~~~~~~l------~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg  279 (328)
T KOG2904|consen  206 NIMESDASDEHPL------LEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGG  279 (328)
T ss_pred             ccccccccccccc------ccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCC
Confidence            433    322221      1478999987631                          01   11234555569999999


Q ss_pred             EEEEeCC
Q 029803          125 IAVYDNT  131 (187)
Q Consensus       125 ~lv~~~~  131 (187)
                      .+.++-.
T Consensus       280 ~~~le~~  286 (328)
T KOG2904|consen  280 FEQLELV  286 (328)
T ss_pred             eEEEEec
Confidence            9999644

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.34  E-value=4.4e-11  Score=90.05  Aligned_cols=103  Identities=20%  Similarity=0.232  Sum_probs=82.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..+++.   ..+++++|+++.+++.+++++...+.. ++++..+|+.+....      ..++||
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~------~~~~~D  114 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEK------GAKSFD  114 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcC------CCCCcc
Confidence            4789999999999999988875   357999999999999999998876543 588888888765322      136899


Q ss_pred             EEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           99 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        99 ~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +|++..   ...+...+++++.+.|++||.+++...
T Consensus       115 ~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~  150 (224)
T TIGR01983       115 VVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI  150 (224)
T ss_pred             EEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence            999863   334567789999999999999988643

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.33  E-value=3.9e-11  Score=90.63  Aligned_cols=98  Identities=18%  Similarity=0.201  Sum_probs=74.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..++..   ..+++++|+++.+++.+++++...+..+++++..+|...    .      .++|
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~------~~~f  128 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES----L------LGRF  128 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh----c------cCCc
Confidence            56789999999999999999875   457999999999999999999887776679999998321    1      3689


Q ss_pred             eEEEEeCC-----CcccHHHHHHHHhccCCCeEEEE
Q 029803           98 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        98 D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+|++...     .+.....++.+.+++++++++.+
T Consensus       129 D~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~  164 (230)
T PRK07580        129 DTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTF  164 (230)
T ss_pred             CEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEE
Confidence            99987532     12334566777676665555544

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.33  E-value=8.6e-12  Score=90.62  Aligned_cols=100  Identities=20%  Similarity=0.322  Sum_probs=79.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEE-EEEcchHHHHHHHhhcccCCC
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ....+||+|||+|..-    +.++  +..+|+++|+++.|-+.+.+.+...... +++ +++++..+. +++     .+.
T Consensus        76 ~K~~vLEvgcGtG~Nf----kfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l-~~l-----~d~  144 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANF----KFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENL-PQL-----ADG  144 (252)
T ss_pred             CccceEEecccCCCCc----ccccCCCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcC-ccc-----ccC
Confidence            3446899999999773    3333  5899999999999999999998876544 455 888887654 443     268


Q ss_pred             ceeEEEEe---CCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           96 SFDYAFVD---ADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d---~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +||.|++.   +..++....+++..++|+|||.+++-
T Consensus       145 s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifi  181 (252)
T KOG4300|consen  145 SYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI  181 (252)
T ss_pred             CeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence            99999765   45678888999999999999999884

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.32  E-value=1e-11  Score=91.02  Aligned_cols=153  Identities=16%  Similarity=0.098  Sum_probs=107.2

Q ss_pred             CcHHHHHHHHHHHHHcC-CCE-EEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            3 LLTIHGQLMAMLLRLVN-AKK-TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~-~~~-vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      ..++...++..|.+..+ ..+ |||||||+|.-+.++|..+| ..+-...|++++.....+.++...++++-...+.-|+
T Consensus         7 aeRNk~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv   85 (204)
T PF06080_consen    7 AERNKDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDV   85 (204)
T ss_pred             hhhCHhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeec
Confidence            45667777777777543 344 99999999999999999998 7888889999999888999988888765444455555


Q ss_pred             HHHHHHHh-hcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHH
Q 029803           81 LSVLDQLL-KYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQ  154 (187)
Q Consensus        81 ~~~~~~~~-~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (187)
                      .+..-... ......++||.||+..     ..+....+|+.+.++|++||.+++...+..+....++             
T Consensus        86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~-------------  152 (204)
T PF06080_consen   86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE-------------  152 (204)
T ss_pred             CCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc-------------
Confidence            43211110 0001246899999752     3345677899999999999999998887654333322             


Q ss_pred             HHHHHHHHhhc-CCCe
Q 029803          155 AILDLNRSLAD-DPRV  169 (187)
Q Consensus       155 ~~~~~~~~l~~-~~~~  169 (187)
                      .-++|..+|+. +|.+
T Consensus       153 SN~~FD~sLr~rdp~~  168 (204)
T PF06080_consen  153 SNAAFDASLRSRDPEW  168 (204)
T ss_pred             HHHHHHHHHhcCCCCc
Confidence            14677777774 4544

The function of this family is unknown.

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.32  E-value=1.6e-11  Score=92.21  Aligned_cols=102  Identities=10%  Similarity=0.042  Sum_probs=74.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-----------CCCCcEEEEEcchHHHHHH
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-----------GVDHKINFIESEALSVLDQ   86 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----------~~~~~~~~~~~d~~~~~~~   86 (187)
                      .++.+||++|||.|..++++|..   +.+|+++|+++.+++.+.+.....           ....++++.++|+.+..+.
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~  112 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA  112 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence            35579999999999999999974   789999999999999764321100           0134688999999875322


Q ss_pred             HhhcccCCCceeEEEEe-----CCCcccHHHHHHHHhccCCCeEEEE
Q 029803           87 LLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .      ...||+|+-.     ..++....+++.+.++|+|||++++
T Consensus       113 ~------~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        113 D------LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             c------CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            1      2578988732     2344556789999999999986443

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.31  E-value=6.7e-11  Score=88.88  Aligned_cols=102  Identities=24%  Similarity=0.372  Sum_probs=88.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  100 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  100 (187)
                      ..+||||||.|.+.+.+|...| +..++|||+....+..+.+.+...++. ++.++++|+.+.+..+.    .+++.|-|
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP-~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~----~~~sl~~I  123 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNP-EKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLI----PDGSLDKI  123 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCC-CCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcC----CCCCeeEE
Confidence            5899999999999999999987 789999999999999999999999986 79999999999988874    23588888


Q ss_pred             EEe---CCCc--------ccHHHHHHHHhccCCCeEEEE
Q 029803          101 FVD---ADKD--------NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus       101 ~~d---~~~~--------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ++.   +++.        -...+++.+.+.|+|||.|.+
T Consensus       124 ~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~  162 (227)
T COG0220         124 YINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHF  162 (227)
T ss_pred             EEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEE
Confidence            775   3322        146789999999999999988

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.31  E-value=1.4e-11  Score=90.89  Aligned_cols=102  Identities=24%  Similarity=0.313  Sum_probs=78.6

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++..|+|..||.|.+++.+|+..+ ..+|+++|++|.+++..++|++.+++.+++..+++|+.++.+        ...
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~--------~~~  169 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP--------EGK  169 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------TT-
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC--------ccc
Confidence            46788999999999999999998544 679999999999999999999999999999999999988765        278


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +|-|+++. +.....++..+..++++||++.+
T Consensus       170 ~drvim~l-p~~~~~fl~~~~~~~~~~g~ihy  200 (200)
T PF02475_consen  170 FDRVIMNL-PESSLEFLDAALSLLKEGGIIHY  200 (200)
T ss_dssp             EEEEEE---TSSGGGGHHHHHHHEEEEEEEEE
T ss_pred             cCEEEECC-hHHHHHHHHHHHHHhcCCcEEEC
Confidence            99999975 44455788999999999998863

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.30  E-value=3.1e-11  Score=87.25  Aligned_cols=108  Identities=11%  Similarity=-0.019  Sum_probs=80.9

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...++.+|||||||+|..+..+++.   ..+++++|+++.+++.+++++..   ..+++++++|+.+....       ..
T Consensus        10 ~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~~-------~~   76 (169)
T smart00650       10 NLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDLP-------KL   76 (169)
T ss_pred             CCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCcc-------cc
Confidence            3456679999999999999999986   46999999999999999998854   24799999999875211       24


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHh--ccCCCeEEEEeCCCCCcc
Q 029803           96 SFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGGT  136 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~--~L~~gG~lv~~~~~~~~~  136 (187)
                      +||.|+.+.........+..+.+  .+.++|+++++.-.....
T Consensus        77 ~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl  119 (169)
T smart00650       77 QPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRL  119 (169)
T ss_pred             CCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHh
Confidence            69999988654444556666654  345889998875544333

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.29  E-value=5e-11  Score=87.62  Aligned_cols=106  Identities=14%  Similarity=0.205  Sum_probs=74.4

Q ss_pred             HHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHh
Q 029803           11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLL   88 (187)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~   88 (187)
                      .+.+....++.+|||+|||+|..+..++....+.++++++|+++.+           .. .+++++++|+.+.  +..+.
T Consensus        24 ~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~   91 (188)
T TIGR00438        24 NQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIR   91 (188)
T ss_pred             HHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHH
Confidence            3334445788899999999999999998877546799999999864           11 2477887786432  11111


Q ss_pred             hcccCCCceeEEEEeCCCc-------c-------cHHHHHHHHhccCCCeEEEEe
Q 029803           89 KYSENEGSFDYAFVDADKD-------N-------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~~-------~-------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .. ...++||+|++++...       .       ....++.+.+.|+|||.+++.
T Consensus        92 ~~-~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~  145 (188)
T TIGR00438        92 ER-VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVK  145 (188)
T ss_pred             HH-hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            00 1246899999975311       1       246788899999999999985

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=99.28  E-value=1.4e-10  Score=93.83  Aligned_cols=100  Identities=17%  Similarity=0.239  Sum_probs=84.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      ..+|||++||+|..++.++...+ ..+|+++|+++++++.+++|++.+++. +++++++|+...+..       .++||+
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~-------~~~fD~  128 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHE-------ERKFDV  128 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhh-------cCCCCE
Confidence            36899999999999999988754 468999999999999999999988876 477999999876542       257999


Q ss_pred             EEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803          100 AFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus       100 i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |++|+. .....+++.+++.+++||++.+.
T Consensus       129 V~lDP~-Gs~~~~l~~al~~~~~~gilyvS  157 (382)
T PRK04338        129 VDIDPF-GSPAPFLDSAIRSVKRGGLLCVT  157 (382)
T ss_pred             EEECCC-CCcHHHHHHHHHHhcCCCEEEEE
Confidence            999974 34467888888899999999986

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=99.28  E-value=2.9e-11  Score=88.78  Aligned_cols=163  Identities=16%  Similarity=0.220  Sum_probs=91.3

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      .|.---.++.++-..+|+.|+|+|...|.+++++|+.+   ...++|+++|++.....  ++.++..++.+++++++||+
T Consensus        17 ~P~Dm~~~qeli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds   94 (206)
T PF04989_consen   17 YPQDMVAYQELIWELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDS   94 (206)
T ss_dssp             -HHHHHHHHHHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-S
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCC
Confidence            44555667788888899999999999999999987644   34789999999654332  22233345567999999998


Q ss_pred             HH--HHHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHH
Q 029803           81 LS--VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAI  156 (187)
Q Consensus        81 ~~--~~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (187)
                      .+  .+...... .......+|+.|++  +.+....++...+++++|+++|+.|+............   +..++-..-.
T Consensus        95 ~d~~~~~~v~~~-~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~---~~w~~g~~p~  170 (206)
T PF04989_consen   95 IDPEIVDQVREL-ASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPD---RPWGPGNNPK  170 (206)
T ss_dssp             SSTHHHHTSGSS-----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEETSHHHHHHHHS----------------H
T ss_pred             CCHHHHHHHHHh-hccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEEEeccccccccccccc---cchhhhhHHH
Confidence            65  23332111 01245668888875  45677888889999999999999988764443331110   0000011126


Q ss_pred             HHHHHHhhcCCCeEEE
Q 029803          157 LDLNRSLADDPRVQLS  172 (187)
Q Consensus       157 ~~~~~~l~~~~~~~~~  172 (187)
                      ++..++++.+++|+.-
T Consensus       171 ~av~~fL~~~~~f~iD  186 (206)
T PF04989_consen  171 TAVKEFLAEHPDFEID  186 (206)
T ss_dssp             HHHHHHHHTTTTEEEE
T ss_pred             HHHHHHHHHCCCcEec
Confidence            6777788889986643

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=2.2e-10  Score=91.88  Aligned_cols=126  Identities=21%  Similarity=0.255  Sum_probs=98.9

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      ++....++...++.-.++.+|||.+++-|.=|..+|..... +..|+++|.++..+...++|+++.|+.+ +.+++.|+.
T Consensus       140 vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~  218 (355)
T COG0144         140 VQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDAR  218 (355)
T ss_pred             EcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccc
Confidence            34556677777888889999999999999999999998863 3566999999999999999999999886 888888875


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .......    ..++||.|++|+..+.                         -..+++.++++|||||.|+.+.+..
T Consensus       219 ~~~~~~~----~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~  291 (355)
T COG0144         219 RLAELLP----GGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL  291 (355)
T ss_pred             ccccccc----ccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence            5433321    1236999999953211                         1357888889999999999987764

>PRK00536 speE spermidine synthase; Provisional

Probab=99.28  E-value=1.1e-10  Score=89.34  Aligned_cols=99  Identities=9%  Similarity=0.066  Sum_probs=79.2

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ..+|++||-||.|.|..+.+++++ +  .+|+.+|++++.++.+++.+....  + .+|++++..     +...     .
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh-~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-----~~~~-----~  136 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKY-D--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-----LLDL-----D  136 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCc-C--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-----hhhc-----c
Confidence            568999999999999999999997 3  399999999999999999766422  2 367888761     1111     1


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .++||+|++|..  ....+++.+.+.|+|||+++...
T Consensus       137 ~~~fDVIIvDs~--~~~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        137 IKKYDLIICLQE--PDIHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             CCcCCEEEEcCC--CChHHHHHHHHhcCCCcEEEECC
Confidence            368999999953  34688899999999999999863

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.27  E-value=1.2e-10  Score=75.97  Aligned_cols=99  Identities=20%  Similarity=0.323  Sum_probs=77.7

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803           22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  101 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  101 (187)
                      +++|+|||.|..+..++. . ...+++++|++++.+..+++...... ..+++++.+|..+....      ..++||+|+
T Consensus         1 ~ildig~G~G~~~~~~~~-~-~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~~~d~i~   71 (107)
T cd02440           1 RVLDLGCGTGALALALAS-G-PGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDAEELPPE------ADESFDVII   71 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-C-CCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcChhhhccc------cCCceEEEE
Confidence            489999999999998887 2 36899999999999998886443333 35689999998876431      147899999


Q ss_pred             EeCCC----cccHHHHHHHHhccCCCeEEEEe
Q 029803          102 VDADK----DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus       102 ~d~~~----~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++...    .....+++.+.+.++++|.+++.
T Consensus        72 ~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          72 SDPPLHHLVEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             EccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence            98643    34567889999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK06202 hypothetical protein; Provisional

Probab=99.25  E-value=2.8e-11  Score=91.80  Aligned_cols=112  Identities=13%  Similarity=0.079  Sum_probs=75.7

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      +++.......++.+|||+|||+|..+..++...+   ++.+++++|+++++++.++++....    ++++...++... +
T Consensus        50 ~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l-~  124 (232)
T PRK06202         50 RLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDEL-V  124 (232)
T ss_pred             HHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccc-c
Confidence            3333333445678999999999999988876432   2469999999999999999876433    244544444322 1


Q ss_pred             HHhhcccCCCceeEEEEeCCCc-----ccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           86 QLLKYSENEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .      .+++||+|++...-.     ....+++++.++++  |.+++.+...
T Consensus       125 ~------~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~  169 (232)
T PRK06202        125 A------EGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIR  169 (232)
T ss_pred             c------cCCCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEecccc
Confidence            1      147899999874221     23468888888887  5666666554

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.25  E-value=2.2e-11  Score=93.98  Aligned_cols=104  Identities=23%  Similarity=0.295  Sum_probs=74.6

Q ss_pred             CCCEEEEEcccccH----HHHHHHhhCCC----CCEEEEEeCCcchHHHHHHHHHh----cC------------------
Q 029803           19 NAKKTIEIGVFTGY----SLLLTALTIPE----DGQITAIDVNRETYEIGLPIIKK----AG------------------   68 (187)
Q Consensus        19 ~~~~vLeiG~g~G~----~~~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~----~~------------------   68 (187)
                      ++.+|+++|||+|.    .+..+++..+.    +.+|+++|+++++++.|++.+-.    .+                  
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45799999999996    34445554432    47899999999999999985310    01                  


Q ss_pred             ----CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEe
Q 029803           69 ----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        69 ----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                          +..++++.+.|..+...       ..++||+|++...     .+.....++++.+.|+|||++++.
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~-------~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESP-------PLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCC-------ccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence                11357788888765321       1478999998531     234457899999999999999984

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.25  E-value=1.2e-11  Score=91.25  Aligned_cols=144  Identities=15%  Similarity=0.186  Sum_probs=93.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      -+++||+|||||-.+..+-..   ..+++++|+|+.|+++|.++    ++  .-++.+.++..+++..     ..++||+
T Consensus       126 F~~~lDLGCGTGL~G~~lR~~---a~~ltGvDiS~nMl~kA~eK----g~--YD~L~~Aea~~Fl~~~-----~~er~DL  191 (287)
T COG4976         126 FRRMLDLGCGTGLTGEALRDM---ADRLTGVDISENMLAKAHEK----GL--YDTLYVAEAVLFLEDL-----TQERFDL  191 (287)
T ss_pred             cceeeecccCcCcccHhHHHH---HhhccCCchhHHHHHHHHhc----cc--hHHHHHHHHHHHhhhc-----cCCcccc
Confidence            579999999999998888765   35999999999999998876    21  2346667776665532     3689999


Q ss_pred             EEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCCCcc---ccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEe
Q 029803          100 AFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGT---VAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSH  173 (187)
Q Consensus       100 i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  173 (187)
                      |...-   .-.....++--+..+|+|||.+.|+--...+.   +..|.   .+...      -+.+....-...++++.-
T Consensus       192 i~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps---~RyAH------~~~YVr~~l~~~Gl~~i~  262 (287)
T COG4976         192 IVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPS---QRYAH------SESYVRALLAASGLEVIA  262 (287)
T ss_pred             hhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeecchh---hhhcc------chHHHHHHHHhcCceEEE
Confidence            97532   12234456666779999999999854322221   11111   11111      234444444455665444


Q ss_pred             e-----------ecCCceEEEEEc
Q 029803          174 V-----------ALGDGITICRRI  186 (187)
Q Consensus       174 l-----------p~~~G~~~~~~~  186 (187)
                      +           |+..++.|++|+
T Consensus       263 ~~~ttiR~d~g~pv~G~L~iark~  286 (287)
T COG4976         263 IEDTTIRRDAGEPVPGILVIARKK  286 (287)
T ss_pred             eecccchhhcCCCCCCceEEEecC
Confidence            3           778888888886

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=5.3e-11  Score=89.81  Aligned_cols=113  Identities=14%  Similarity=0.157  Sum_probs=92.7

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      .++-+.++..++.+|+|-|+|+|..+.++++...+.++++++|.....++.|.+.++..++.+++++.+.|.+..--.. 
T Consensus        95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~-  173 (314)
T KOG2915|consen   95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI-  173 (314)
T ss_pred             HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc-
Confidence            3555666888999999999999999999999998899999999999999999999999999999999999987631111 


Q ss_pred             hcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCe-EEEE
Q 029803           89 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG-IAVY  128 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG-~lv~  128 (187)
                          ....+|.||+|.  +.....+..+++.||.+| ++|.
T Consensus       174 ----ks~~aDaVFLDl--PaPw~AiPha~~~lk~~g~r~cs  208 (314)
T KOG2915|consen  174 ----KSLKADAVFLDL--PAPWEAIPHAAKILKDEGGRLCS  208 (314)
T ss_pred             ----cccccceEEEcC--CChhhhhhhhHHHhhhcCceEEe
Confidence                147899999995  344456677777888877 4443

>PRK05785 hypothetical protein; Provisional

Probab=99.24  E-value=7.8e-11  Score=89.01  Aligned_cols=97  Identities=13%  Similarity=0.123  Sum_probs=72.9

Q ss_pred             HHHHHHHH-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803           10 LMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus        10 ll~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      ++..+... .++.+|||+|||+|..+..+++..  +.+|+++|++++|++.++++.         ..+++|+.+. +   
T Consensus        41 ~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~l-p---  105 (226)
T PRK05785         41 LVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD---------DKVVGSFEAL-P---  105 (226)
T ss_pred             HHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc---------ceEEechhhC-C---
Confidence            34444332 357899999999999999998764  469999999999999988641         2467777543 2   


Q ss_pred             hcccCCCceeEEEEeC---CCcccHHHHHHHHhccCCCe
Q 029803           89 KYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGG  124 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG  124 (187)
                         ..+++||+|++..   +..+....++++.+.|+|..
T Consensus       106 ---~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~  141 (226)
T PRK05785        106 ---FRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQV  141 (226)
T ss_pred             ---CCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCce
Confidence               1358999999864   34566788999999999953

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.24  E-value=4.5e-10  Score=90.46  Aligned_cols=121  Identities=15%  Similarity=0.109  Sum_probs=85.5

Q ss_pred             CCcHHHHHHHH-HHHHHcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc
Q 029803            2 LLLTIHGQLMA-MLLRLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   78 (187)
Q Consensus         2 ~~~~~~~~ll~-~l~~~~~--~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~   78 (187)
                      ++++...+.|. .+....+  +.++||++||+|..++.+++..   .+|+++|.++.+++.+++|+..+++. +++++.+
T Consensus       186 Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~  261 (362)
T PRK05031        186 QPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NVQIIRM  261 (362)
T ss_pred             ccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEC
Confidence            44555444444 3333332  3579999999999999888863   49999999999999999999988875 6999999


Q ss_pred             chHHHHHHHhhccc---------CCCceeEEEEeCCCcc-cHHHHHHHHhccCCCeEEEEe
Q 029803           79 EALSVLDQLLKYSE---------NEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        79 d~~~~~~~~~~~~~---------~~~~~D~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+.+.++.+.....         ...+||+||+|+.... ....++.+.+   +++++.++
T Consensus       262 d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~---~~~ivyvS  319 (362)
T PRK05031        262 SAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA---YERILYIS  319 (362)
T ss_pred             CHHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc---cCCEEEEE
Confidence            99888765422100         0125899999986544 3445555543   67776663

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.23  E-value=1.4e-10  Score=89.52  Aligned_cols=110  Identities=20%  Similarity=0.209  Sum_probs=78.8

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++++|||||||.|+.+..++..-  ...|+++|+++......+..-.-.+....+..... ..+.++.       .+.
T Consensus       113 ~L~gk~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lpl-gvE~Lp~-------~~~  182 (315)
T PF08003_consen  113 DLKGKRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPL-GVEDLPN-------LGA  182 (315)
T ss_pred             CcCCCEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCc-chhhccc-------cCC
Confidence            4578999999999999999998763  35799999998776554433222333333333322 2333333       378


Q ss_pred             eeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCCCcc
Q 029803           97 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGT  136 (187)
Q Consensus        97 ~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~  136 (187)
                      ||.||+-+   +..+....++++...|++||.++++.....|.
T Consensus       183 FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~  225 (315)
T PF08003_consen  183 FDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGD  225 (315)
T ss_pred             cCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence            99999876   45667788999999999999999987776554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=99.23  E-value=1.2e-10  Score=86.23  Aligned_cols=104  Identities=15%  Similarity=0.246  Sum_probs=82.0

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCC-CCcEEEEEcchHHHHHHHhhcccCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      -.++.+|||.++|-||+++..++.   ++ +|+++|.+|..++.|+-|==..++ ...++++.||+.+..+.+     .+
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~r---GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~-----~D  203 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALER---GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDF-----DD  203 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHc---CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcC-----Cc
Confidence            346789999999999999988875   55 999999999999888755211111 135799999999998886     46


Q ss_pred             CceeEEEEeCCC------cccHHHHHHHHhccCCCeEEEE
Q 029803           95 GSFDYAFVDADK------DNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        95 ~~~D~i~~d~~~------~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ++||+|+.|...      -...+++++++++|+|||.++-
T Consensus       204 ~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFH  243 (287)
T COG2521         204 ESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFH  243 (287)
T ss_pred             cccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence            799999998632      1235789999999999999864

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.22  E-value=2e-10  Score=82.01  Aligned_cols=106  Identities=24%  Similarity=0.393  Sum_probs=81.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      +.+|||+|||.|.....+++.-- ...++++|.++.+++.|+...+..+.++.+++.+.|+.+.  .+     ..++||+
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~--~~-----~~~qfdl  139 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP--DF-----LSGQFDL  139 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC--cc-----cccceeE
Confidence            44999999999999999987542 3569999999999999999999999998899999998763  21     2467887


Q ss_pred             EE----Ee-----CC--CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803          100 AF----VD-----AD--KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus       100 i~----~d-----~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      |.    .|     +.  .....-++..+.++|+|||++++..+.|
T Consensus       140 vlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~  184 (227)
T KOG1271|consen  140 VLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF  184 (227)
T ss_pred             EeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence            74    11     11  1122346777789999999999976665

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=99.22  E-value=4e-10  Score=90.75  Aligned_cols=101  Identities=15%  Similarity=0.117  Sum_probs=86.9

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  100 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  100 (187)
                      .+|||..||+|..++.+++..+...+|+++|+++++++.+++|++.++.. +++++++|+...+...      ..+||+|
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~------~~~fDvI  118 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYR------NRKFHVI  118 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHh------CCCCCEE
Confidence            48999999999999999987532468999999999999999999988765 5899999999887653      3679999


Q ss_pred             EEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803          101 FVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus       101 ~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++|+ ......+++.+.+.++++|+|.+.
T Consensus       119 dlDP-fGs~~~fld~al~~~~~~glL~vT  146 (374)
T TIGR00308       119 DIDP-FGTPAPFVDSAIQASAERGLLLVT  146 (374)
T ss_pred             EeCC-CCCcHHHHHHHHHhcccCCEEEEE
Confidence            9998 444568999999999999999986

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PLN02672 methionine S-methyltransferase

Probab=99.22  E-value=2.5e-10  Score=101.67  Aligned_cols=120  Identities=15%  Similarity=0.135  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHc----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC-----------
Q 029803            5 TIHGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV-----------   69 (187)
Q Consensus         5 ~~~~~ll~~l~~~~----~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-----------   69 (187)
                      +.+..++..+....    ++.+|||+|||+|..++.++...+ ..+++++|+++++++.|++|+..+++           
T Consensus       100 peTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~  178 (1082)
T PLN02672        100 DWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGE  178 (1082)
T ss_pred             hhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccc
Confidence            45556666533221    346899999999999999999876 67999999999999999999987643           


Q ss_pred             ----CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC----------------C---------------------cc
Q 029803           70 ----DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD----------------K---------------------DN  108 (187)
Q Consensus        70 ----~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~----------------~---------------------~~  108 (187)
                          .++++++++|..+.+...      ..+||+|+.+..                +                     .+
T Consensus       179 ~~~l~~rV~f~~sDl~~~~~~~------~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~d  252 (1082)
T PLN02672        179 GKTLLDRVEFYESDLLGYCRDN------NIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQF  252 (1082)
T ss_pred             cccccccEEEEECchhhhcccc------CCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCc
Confidence                247999999998754321      237999987631                0                     00


Q ss_pred             ----cHHHHHHHHhccCCCeEEEEeCC
Q 029803          109 ----YCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus       109 ----~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                          |..+++++.+.|+|||.+++.-.
T Consensus       253 GL~~yr~i~~~a~~~L~pgG~l~lEiG  279 (1082)
T PLN02672        253 GLGLIARAVEEGISVIKPMGIMIFNMG  279 (1082)
T ss_pred             HHHHHHHHHHHHHHhccCCCEEEEEEC
Confidence                13456666789999999998633

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.21  E-value=2.1e-10  Score=83.18  Aligned_cols=108  Identities=23%  Similarity=0.301  Sum_probs=71.6

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC--CCCcEEEEEcchHHHH-HHHhhccc
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--VDHKINFIESEALSVL-DQLLKYSE   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~~~~~~~d~~~~~-~~~~~~~~   92 (187)
                      ...++++|||+|||+|..++.++...+ ..+|+..|.++ .++..+.|++.++  ...++++...+-.+.. +...    
T Consensus        42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~-~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~----  115 (173)
T PF10294_consen   42 ELFRGKRVLELGAGTGLPGIAAAKLFG-AARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLL----  115 (173)
T ss_dssp             GGTTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHH----
T ss_pred             hhcCCceEEEECCccchhHHHHHhccC-CceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccccc----
Confidence            466889999999999999999998754 67999999988 9999999999876  4566777766543321 2221    


Q ss_pred             CCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEe
Q 029803           93 NEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...+||+|+..-   ..+.+..+++.+..+|+++|.+++.
T Consensus       116 ~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~  155 (173)
T PF10294_consen  116 EPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLA  155 (173)
T ss_dssp             S-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEE
T ss_pred             ccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            236899998652   4566778888888999999886664

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=99.19  E-value=1e-09  Score=85.86  Aligned_cols=91  Identities=15%  Similarity=0.097  Sum_probs=71.7

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      ++.+...+...+...++.+|||||||+|..+..++..   ..+++++|+++++++.+++++...+...+++++++|+.+.
T Consensus        21 d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~   97 (294)
T PTZ00338         21 NPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT   97 (294)
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence            3444444444555667789999999999999999875   4589999999999999999998776556799999999774


Q ss_pred             HHHHhhcccCCCceeEEEEeCCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDADK  106 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~  106 (187)
                      .         ...||.|+.+...
T Consensus        98 ~---------~~~~d~VvaNlPY  111 (294)
T PTZ00338         98 E---------FPYFDVCVANVPY  111 (294)
T ss_pred             c---------ccccCEEEecCCc
Confidence            1         2578998887543

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.19  E-value=1.4e-09  Score=87.32  Aligned_cols=121  Identities=12%  Similarity=0.044  Sum_probs=85.0

Q ss_pred             CCcHHHHHHHH-HHHHHcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc
Q 029803            2 LLLTIHGQLMA-MLLRLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   78 (187)
Q Consensus         2 ~~~~~~~~ll~-~l~~~~~--~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~   78 (187)
                      ++++...+.|. .+....+  +.++||+|||+|..++.+++..   .+|+++|.++++++.+++|+..+++. +++++.+
T Consensus       177 Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~  252 (353)
T TIGR02143       177 QPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRM  252 (353)
T ss_pred             cCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEc
Confidence            34444443333 4444332  4579999999999999998864   48999999999999999999998875 5999999


Q ss_pred             chHHHHHHHhhc-------c--cCCCceeEEEEeCCCcc-cHHHHHHHHhccCCCeEEEEe
Q 029803           79 EALSVLDQLLKY-------S--ENEGSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        79 d~~~~~~~~~~~-------~--~~~~~~D~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+.+.++.....       +  .....||+||+|+.... ....++.+.+   +++++.++
T Consensus       253 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~---~~~ivYvs  310 (353)
T TIGR02143       253 SAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQA---YERILYIS  310 (353)
T ss_pred             CHHHHHHHHhhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHHc---CCcEEEEE
Confidence            998877642110       0  00124899999986544 3455555544   67777764

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.18  E-value=8.6e-11  Score=83.64  Aligned_cols=77  Identities=23%  Similarity=0.314  Sum_probs=59.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  100 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  100 (187)
                      +.|+|+.||.|..++.+|+..   .+|+++|++|..++.++.|++.+|+.++++++++|..+.++.+..    ...+|+|
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----~~~~D~v   73 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----NKIFDVV   73 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB----------SEE
T ss_pred             CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc----cccccEE
Confidence            469999999999999999974   499999999999999999999999999999999999997665421    1228999


Q ss_pred             EEeC
Q 029803          101 FVDA  104 (187)
Q Consensus       101 ~~d~  104 (187)
                      |+++
T Consensus        74 FlSP   77 (163)
T PF09445_consen   74 FLSP   77 (163)
T ss_dssp             EE--
T ss_pred             EECC
Confidence            9985

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=8e-10  Score=90.46  Aligned_cols=119  Identities=15%  Similarity=0.122  Sum_probs=92.8

Q ss_pred             CCcHHHHHHHHHHHH----HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE
Q 029803            2 LLLTIHGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   77 (187)
Q Consensus         2 ~~~~~~~~ll~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~   77 (187)
                      +.++.+.+-|...+.    ..+.++++|+.||.|.+++.+|..   ..+|+++|+++++++.|++|++.++..+ +++..
T Consensus       272 Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~  347 (432)
T COG2265         272 QVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDN-VEFIA  347 (432)
T ss_pred             ecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEe
Confidence            445555555554443    446689999999999999999964   5699999999999999999999999886 99999


Q ss_pred             cchHHHHHHHhhcccCCCceeEEEEeCCCcccH-HHHHHHHhccCCCeEEEEe
Q 029803           78 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        78 ~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~-~~~~~~~~~L~~gG~lv~~  129 (187)
                      +++.++.+...    ....+|.|++|+...... .+++.+ ..++|..++-++
T Consensus       348 ~~ae~~~~~~~----~~~~~d~VvvDPPR~G~~~~~lk~l-~~~~p~~IvYVS  395 (432)
T COG2265         348 GDAEEFTPAWW----EGYKPDVVVVDPPRAGADREVLKQL-AKLKPKRIVYVS  395 (432)
T ss_pred             CCHHHHhhhcc----ccCCCCEEEECCCCCCCCHHHHHHH-HhcCCCcEEEEe
Confidence            99999877652    235899999998766665 455544 666777666653

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=2.1e-10  Score=83.66  Aligned_cols=113  Identities=18%  Similarity=0.233  Sum_probs=85.9

Q ss_pred             HHHHHHHHHH-HcCCCEEEEEcccccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCC---------CCcEEE
Q 029803            7 HGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGV---------DHKINF   75 (187)
Q Consensus         7 ~~~ll~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~---------~~~~~~   75 (187)
                      .+.++..|-. ..++.+.||+|+|+|+.+..++..+...+. .++||.-++.++.+++|+.+.-.         ..+..+
T Consensus        69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i  148 (237)
T KOG1661|consen   69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI  148 (237)
T ss_pred             HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence            4555665553 667789999999999999999976654444 59999999999999999886441         145778


Q ss_pred             EEcchHHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           76 IESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        76 ~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.||.....+.       ..+||.|++.+..+.   .-+.+...|++||.+++-
T Consensus       149 vvGDgr~g~~e-------~a~YDaIhvGAaa~~---~pq~l~dqL~~gGrllip  192 (237)
T KOG1661|consen  149 VVGDGRKGYAE-------QAPYDAIHVGAAASE---LPQELLDQLKPGGRLLIP  192 (237)
T ss_pred             EeCCccccCCc-------cCCcceEEEccCccc---cHHHHHHhhccCCeEEEe
Confidence            89998775543       589999999865544   344566788999988873

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=99.16  E-value=4.6e-10  Score=88.64  Aligned_cols=112  Identities=20%  Similarity=0.170  Sum_probs=94.6

Q ss_pred             HHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029803           12 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS   91 (187)
Q Consensus        12 ~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   91 (187)
                      +..-....+.+|+|..+|.|.+++.+|..-.  .+|+++|++|.+++..++|++.+++.+.+..++||+.+..+.+    
T Consensus       181 Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~----  254 (341)
T COG2520         181 RVAELVKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL----  254 (341)
T ss_pred             HHHhhhcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc----
Confidence            3333455699999999999999999998743  3499999999999999999999999988999999999987653    


Q ss_pred             cCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                         +.+|-|++.. +.....++..+.+.+++||++.++....
T Consensus       255 ---~~aDrIim~~-p~~a~~fl~~A~~~~k~~g~iHyy~~~~  292 (341)
T COG2520         255 ---GVADRIIMGL-PKSAHEFLPLALELLKDGGIIHYYEFVP  292 (341)
T ss_pred             ---ccCCEEEeCC-CCcchhhHHHHHHHhhcCcEEEEEeccc
Confidence               7899999964 4455678888999999999999987664

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.15  E-value=5.3e-10  Score=81.50  Aligned_cols=120  Identities=20%  Similarity=0.202  Sum_probs=88.9

Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCC---------EEEEEeCCcchHHHHHHHHHhcCCCCc
Q 029803            2 LLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDG---------QITAIDVNRETYEIGLPIIKKAGVDHK   72 (187)
Q Consensus         2 ~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~---------~v~~iD~~~~~~~~a~~~~~~~~~~~~   72 (187)
                      +..+..+..|-.++...++..+||-.||+|...++.+.... +.         ++++.|+++++++.+++|++.+++...
T Consensus        11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~-~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~   89 (179)
T PF01170_consen   11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGA-NIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDY   89 (179)
T ss_dssp             SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHT-TTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGG
T ss_pred             CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhh-CcccccccccccEEecCCCHHHHHHHHHHHHhcccCCc
Confidence            45678888888998888889999999999999988876654 33         389999999999999999999999888


Q ss_pred             EEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-----------cccHHHHHHHHhccCCCeEEEEe
Q 029803           73 INFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        73 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-----------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.+.+.|+.+.-  +     ..+++|.|++|...           .-|..+++.+.+.+++..++++.
T Consensus        90 i~~~~~D~~~l~--~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~~  150 (179)
T PF01170_consen   90 IDFIQWDARELP--L-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLTT  150 (179)
T ss_dssp             EEEEE--GGGGG--G-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEEE
T ss_pred             eEEEecchhhcc--c-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEEE
Confidence            999999997753  1     14789999999632           22456778888899996666663

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.15  E-value=2.7e-09  Score=84.17  Aligned_cols=82  Identities=13%  Similarity=0.258  Sum_probs=65.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-CCCCcEEEEE-cchHHHHHHHhhcccCCCc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIE-SEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~   96 (187)
                      +..++||||||+|.....++...+ +.+++++|+++.+++.|+++++.+ ++.+++++.. .+..+.+..+..   ..++
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~---~~~~  189 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIH---KNER  189 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccc---cCCc
Confidence            457899999999988888877665 789999999999999999999998 7888898864 444444433211   1468


Q ss_pred             eeEEEEeC
Q 029803           97 FDYAFVDA  104 (187)
Q Consensus        97 ~D~i~~d~  104 (187)
                      ||+|++..
T Consensus       190 fDlivcNP  197 (321)
T PRK11727        190 FDATLCNP  197 (321)
T ss_pred             eEEEEeCC
Confidence            99999985

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.14  E-value=1.3e-09  Score=85.98  Aligned_cols=96  Identities=16%  Similarity=0.066  Sum_probs=69.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC----CCcEEEEEcchHHHHHHHhhcccCC
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++.....    ..++++..+|..+.          .
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----------~  210 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----------S  210 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----------C
Confidence            5679999999999999999974   57999999999999999999876421    13577888886432          3


Q ss_pred             CceeEEEEeCCCc-----ccHHHHHHHHhccCCCeEEEE
Q 029803           95 GSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        95 ~~~D~i~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ++||+|++.....     .....++.+.+ +.++++++.
T Consensus       211 ~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs  248 (315)
T PLN02585        211 GKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIIS  248 (315)
T ss_pred             CCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEE
Confidence            7899998653211     12234555544 456666654

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.14  E-value=3.2e-10  Score=84.35  Aligned_cols=110  Identities=21%  Similarity=0.315  Sum_probs=79.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC-CCC------------------------
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-VDH------------------------   71 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-~~~------------------------   71 (187)
                      ...++.+|||||.+|..++.+|+.+. ...+.|+|+++..+..|+++++... ...                        
T Consensus        56 ~f~~~~~LDIGCNsG~lt~~iak~F~-~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~  134 (288)
T KOG2899|consen   56 WFEPKQALDIGCNSGFLTLSIAKDFG-PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEAD  134 (288)
T ss_pred             ccCcceeEeccCCcchhHHHHHHhhc-cceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccccccccc
Confidence            45788999999999999999999987 6789999999999999999875321 000                        


Q ss_pred             ---------cEEE----EEcchHHHHHHHhhcccCCCceeEEEEe---------CCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           72 ---------KINF----IESEALSVLDQLLKYSENEGSFDYAFVD---------ADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        72 ---------~~~~----~~~d~~~~~~~~~~~~~~~~~~D~i~~d---------~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                               ++.+    +..+..+++..      ..+.||.|+|-         ...+....++..++++|.|||++|+.
T Consensus       135 ~a~t~~~p~n~~f~~~n~vle~~dfl~~------~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  135 RAFTTDFPDNVWFQKENYVLESDDFLDM------IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             ccccccCCcchhcccccEEEecchhhhh------ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence                     1111    11122233311      24789999753         23455788999999999999999996


Q ss_pred             CCCC
Q 029803          130 NTLW  133 (187)
Q Consensus       130 ~~~~  133 (187)
                      ---|
T Consensus       209 PQpW  212 (288)
T KOG2899|consen  209 PQPW  212 (288)
T ss_pred             CCch
Confidence            5444

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=8.3e-09  Score=74.38  Aligned_cols=90  Identities=17%  Similarity=0.278  Sum_probs=69.9

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ...+++|+|+|||||..++..+..-  ..+|+++|+++++++.+++|.++  +..+++++.+|+.++          ..+
T Consensus        43 ~l~g~~V~DlG~GTG~La~ga~~lG--a~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~----------~~~  108 (198)
T COG2263          43 DLEGKTVLDLGAGTGILAIGAALLG--ASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDF----------RGK  108 (198)
T ss_pred             CcCCCEEEEcCCCcCHHHHHHHhcC--CcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhc----------CCc
Confidence            3467789999999999998777653  47999999999999999999988  345799999999775          578


Q ss_pred             eeEEEEeCCC-----cccHHHHHHHHhcc
Q 029803           97 FDYAFVDADK-----DNYCNYHERLMKLL  120 (187)
Q Consensus        97 ~D~i~~d~~~-----~~~~~~~~~~~~~L  120 (187)
                      +|.+++++..     ..-..++..+++..
T Consensus       109 ~dtvimNPPFG~~~rhaDr~Fl~~Ale~s  137 (198)
T COG2263         109 FDTVIMNPPFGSQRRHADRPFLLKALEIS  137 (198)
T ss_pred             cceEEECCCCccccccCCHHHHHHHHHhh
Confidence            9989888531     12244566565554

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.12  E-value=1.8e-10  Score=85.02  Aligned_cols=115  Identities=14%  Similarity=0.155  Sum_probs=78.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      +..+.||+|+|.|..|..++...  -.+|..+|+.+..++.|++.+... .....++++....++.|.       ..+||
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~-------~~~YD  124 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPE-------EGKYD  124 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG-----------TT-EE
T ss_pred             CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCC-------CCcEe
Confidence            45689999999999998776544  469999999999999999876541 123466788887776554       47999


Q ss_pred             EEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCC-CCCcc-ccCCCCC
Q 029803           99 YAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNT-LWGGT-VAVPEEQ  143 (187)
Q Consensus        99 ~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~-~~~~~-~~~~~~~  143 (187)
                      +|++.-.     ..+...++++|.+.|+|+|+|++.+. ...+. +.++.+.
T Consensus       125 lIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~Ds  176 (218)
T PF05891_consen  125 LIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDS  176 (218)
T ss_dssp             EEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTT
T ss_pred             EEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccC
Confidence            9999742     34567799999999999999999544 34443 4444433

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.12  E-value=3.1e-10  Score=85.08  Aligned_cols=115  Identities=17%  Similarity=0.224  Sum_probs=80.3

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh-cC----------CCCc
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-AG----------VDHK   72 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-~~----------~~~~   72 (187)
                      +|...+++.. ....++.+||..|||.|....+||..   +.+|+++|+++.+++.+.+.... ..          -..+
T Consensus        23 ~p~L~~~~~~-l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~   98 (218)
T PF05724_consen   23 NPALVEYLDS-LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR   98 (218)
T ss_dssp             THHHHHHHHH-HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred             CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence            3444455554 23456679999999999999999985   67999999999999887432111 00          1235


Q ss_pred             EEEEEcchHHHHHHHhhcccCCCceeEEEEe-----CCCcccHHHHHHHHhccCCCeEEEE
Q 029803           73 INFIESEALSVLDQLLKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        73 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ++++++|.++.-+..      .++||+|+=.     ..+.....+.+++.++|+|||.+++
T Consensus        99 i~~~~gDfF~l~~~~------~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lL  153 (218)
T PF05724_consen   99 ITIYCGDFFELPPED------VGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLL  153 (218)
T ss_dssp             EEEEES-TTTGGGSC------HHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEE
T ss_pred             eEEEEcccccCChhh------cCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence            799999998753321      2579999733     2456677899999999999999444

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=99.12  E-value=6.9e-09  Score=80.90  Aligned_cols=123  Identities=24%  Similarity=0.253  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      .....+...++...++.+|||++++.|.=+..++..+...+.+++.|++++.+...++++.+.|..+ +.+...|+....
T Consensus        71 d~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~  149 (283)
T PF01189_consen   71 DESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLD  149 (283)
T ss_dssp             HHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHH
T ss_pred             ccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeecccccc
Confidence            3445566666777788899999999999999999998767999999999999999999999999864 777778887765


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhcc----CCCeEEEEeCCCC
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLL----KVGGIAVYDNTLW  133 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L----~~gG~lv~~~~~~  133 (187)
                      +...     ...||.|++|+..+.                         -...++++++.+    +|||+++......
T Consensus       150 ~~~~-----~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~  222 (283)
T PF01189_consen  150 PKKP-----ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSL  222 (283)
T ss_dssp             HHHH-----TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHH
T ss_pred             cccc-----ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEeccH
Confidence            5432     346999999953211                         024788888999    9999999976553

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PHA03412 putative methyltransferase; Provisional

Probab=99.12  E-value=2e-09  Score=80.80  Aligned_cols=99  Identities=15%  Similarity=0.268  Sum_probs=73.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ..+.+|||+|||+|..++.++...+  +..+|+++|+++.+++.|++++.      ++.++++|+....  +      .+
T Consensus        48 ~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~--~------~~  113 (241)
T PHA03412         48 CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTE--F------DT  113 (241)
T ss_pred             cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhccc--c------cC
Confidence            3567999999999999999987643  25699999999999999998752      4788888886531  1      36


Q ss_pred             ceeEEEEeCCC-----cc----------cHHHHHHHHhccCCCeEEEEeC
Q 029803           96 SFDYAFVDADK-----DN----------YCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        96 ~~D~i~~d~~~-----~~----------~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +||+|++++..     .+          ...+++.+.+++++|+.|+-..
T Consensus       114 ~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ILP~~  163 (241)
T PHA03412        114 LFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFIIPQM  163 (241)
T ss_pred             CccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEeCcc
Confidence            89999987421     11          2346777888888877644333

>PHA03411 putative methyltransferase; Provisional

Probab=99.10  E-value=8.2e-10  Score=84.71  Aligned_cols=96  Identities=15%  Similarity=0.198  Sum_probs=71.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      ....+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++      .+++++++|+.+...        ..+|
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~--------~~kF  127 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES--------NEKF  127 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc--------cCCC
Confidence            3457999999999999988887654 579999999999999998864      258899999987532        3689


Q ss_pred             eEEEEeCCCc-----c------c------------HHHHHHHHhccCCCeEEEE
Q 029803           98 DYAFVDADKD-----N------Y------------CNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        98 D~i~~d~~~~-----~------~------------~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+|+++....     .      +            ..++.....+|+|+|.+.+
T Consensus       128 DlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~  181 (279)
T PHA03411        128 DVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGF  181 (279)
T ss_pred             cEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEE
Confidence            9999974211     0      1            2344444578889986655

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=99.09  E-value=1.4e-09  Score=79.44  Aligned_cols=96  Identities=23%  Similarity=0.290  Sum_probs=81.4

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803           22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  101 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  101 (187)
                      +++|||+|.|..++.+|-..| +.+++.+|.........+..+...++. +++++++++.+  ..      ...+||+|+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~--~~------~~~~fd~v~  120 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE--PE------YRESFDVVT  120 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH--TT------TTT-EEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc--cc------cCCCccEEE
Confidence            799999999999999999887 899999999999999999999999997 59999999987  11      258999999


Q ss_pred             EeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803          102 VDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus       102 ~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +-+- .....+++.+.+++++||.+++
T Consensus       121 aRAv-~~l~~l~~~~~~~l~~~G~~l~  146 (184)
T PF02527_consen  121 ARAV-APLDKLLELARPLLKPGGRLLA  146 (184)
T ss_dssp             EESS-SSHHHHHHHHGGGEEEEEEEEE
T ss_pred             eehh-cCHHHHHHHHHHhcCCCCEEEE
Confidence            9763 3667888999999999999987

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.08  E-value=6e-10  Score=87.55  Aligned_cols=117  Identities=18%  Similarity=0.197  Sum_probs=96.2

Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-ch
Q 029803            2 LLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EA   80 (187)
Q Consensus         2 ~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~   80 (187)
                      +.+|..+..+..|++..++..|||--||||...+.....   +++++++|++..++.-++.|++..++.+ ..+... |+
T Consensus       180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~---G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da  255 (347)
T COG1041         180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLM---GARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDA  255 (347)
T ss_pred             CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhc---CceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccc
Confidence            467899999999999999999999999999999887764   7899999999999999999999988765 544444 87


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCC------------cccHHHHHHHHhccCCCeEEEEe
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ... + +     ..+++|.|..|...            +-+.++++.+.+.|++||++++-
T Consensus       256 ~~l-p-l-----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~  309 (347)
T COG1041         256 TNL-P-L-----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFA  309 (347)
T ss_pred             ccC-C-C-----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence            653 2 2     23479999999531            12567889999999999999884

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.08  E-value=1.7e-10  Score=85.80  Aligned_cols=107  Identities=20%  Similarity=0.208  Sum_probs=79.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCC--CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH-HHHHhhcccCCCc
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPED--GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGS   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~   96 (187)
                      +.+|||||||.|.+...+.+..+ +  .+++++|.+|.+++..+++..-..  .++.....|.... +..    ..+.++
T Consensus        72 ~~~ilEvGCGvGNtvfPll~~~~-n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~~~~----~~~~~s  144 (264)
T KOG2361|consen   72 AETILEVGCGVGNTVFPLLKTSP-NNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSPSLKE----PPEEGS  144 (264)
T ss_pred             hhhheeeccCCCcccchhhhcCC-CCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccchhccC----CCCcCc
Confidence            34799999999999999998776 5  789999999999999998754322  4555555555332 111    134578


Q ss_pred             eeEEEEe-----CCCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           97 FDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        97 ~D~i~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +|.|.+-     -.+......++++.++|||||.|++-|.-.
T Consensus       145 vD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~  186 (264)
T KOG2361|consen  145 VDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGR  186 (264)
T ss_pred             cceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence            8877433     256677889999999999999999977643

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.07  E-value=2.2e-09  Score=80.64  Aligned_cols=109  Identities=8%  Similarity=0.006  Sum_probs=79.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh-----------cCCCCcEEEEEcchHHHHHHH
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-----------AGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-----------~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      ++.+||..|||.|....+||..   +.+|+++|+++.+++.+.+....           ......++++++|.++.-+.-
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~  119 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA  119 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence            4579999999999999999985   77999999999999987652100           011246899999998752110


Q ss_pred             hhcccCCCceeEEEEe-----CCCcccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803           88 LKYSENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTLWG  134 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                          ...++||+|+-.     ..+.....+.+.+.++|+|||.+++-.....
T Consensus       120 ----~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~  167 (226)
T PRK13256        120 ----NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD  167 (226)
T ss_pred             ----cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence                012579998643     2445567899999999999998887544333

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.07  E-value=3.4e-10  Score=86.29  Aligned_cols=104  Identities=15%  Similarity=0.197  Sum_probs=81.6

Q ss_pred             HHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      ......+.++|+|||+|.|..+..+++.+| +.+++.+|. |+.++.+++       .++++++.+|.++.   +     
T Consensus        94 ~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~---~-----  156 (241)
T PF00891_consen   94 EAFDFSGFKTVVDVGGGSGHFAIALARAYP-NLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDP---L-----  156 (241)
T ss_dssp             HHSTTTTSSEEEEET-TTSHHHHHHHHHST-TSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTC---C-----
T ss_pred             ccccccCccEEEeccCcchHHHHHHHHHCC-CCcceeecc-Hhhhhcccc-------ccccccccccHHhh---h-----
Confidence            333455778999999999999999999998 899999998 888888887       56899999999742   2     


Q ss_pred             CCCceeEEEEeC-----CCcccHHHHHHHHhccCCC--eEEEEeCCCCCc
Q 029803           93 NEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVG--GIAVYDNTLWGG  135 (187)
Q Consensus        93 ~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~g--G~lv~~~~~~~~  135 (187)
                       +. +|++++..     ..+....+++++.+.|+||  |.|++.+.+.+.
T Consensus       157 -P~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~  204 (241)
T PF00891_consen  157 -PV-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPD  204 (241)
T ss_dssp             -SS-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred             -cc-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence             24 99999864     2344567899999999998  999998877533

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.06  E-value=3.4e-09  Score=74.75  Aligned_cols=119  Identities=18%  Similarity=0.106  Sum_probs=93.2

Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            2 LLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         2 ~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      ..++..++.+...+.-..+.-|||+|.|+|..+..+++..-+...++++|.+++......+.+.      -++++.||+.
T Consensus        31 PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~  104 (194)
T COG3963          31 PSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAF  104 (194)
T ss_pred             CCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------Cccccccchh
Confidence            4567778888888888888999999999999999998877667899999999999988887753      3669999998


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEE
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +.-..+...  .+..||.|++....     ....+.++.+...|..||.++-
T Consensus       105 ~l~~~l~e~--~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq  154 (194)
T COG3963         105 DLRTTLGEH--KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ  154 (194)
T ss_pred             hHHHHHhhc--CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence            753333211  35689999987532     2345688999999999998875

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.05  E-value=1.5e-09  Score=78.76  Aligned_cols=99  Identities=12%  Similarity=0.212  Sum_probs=73.1

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||.|....++...  .+.+.+++|++++.+..+.++        -+.++++|+.+.+..+     .+++
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f-----~d~s   75 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADF-----PDQS   75 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhC-----CCCC
Confidence            356789999999999998888774  378999999999877766544        3779999999888776     4789


Q ss_pred             eeEEEEeCCCc---ccHHHHHHHHhccCCCeEEEEeCC
Q 029803           97 FDYAFVDADKD---NYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        97 ~D~i~~d~~~~---~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ||.|++...-+   .....++++++.-+ .+++.|.|.
T Consensus        76 FD~VIlsqtLQ~~~~P~~vL~EmlRVgr-~~IVsFPNF  112 (193)
T PF07021_consen   76 FDYVILSQTLQAVRRPDEVLEEMLRVGR-RAIVSFPNF  112 (193)
T ss_pred             ccEEehHhHHHhHhHHHHHHHHHHHhcC-eEEEEecCh
Confidence            99999975433   33445666655433 356666554

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=99.04  E-value=3.2e-09  Score=78.86  Aligned_cols=98  Identities=21%  Similarity=0.298  Sum_probs=83.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc-ee
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS-FD   98 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~D   98 (187)
                      +++++|||+|.|..++.+|-..| +.+++-+|.....+...+......++. +++++++.+.++.+.        .. ||
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p-~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~--------~~~~D  137 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFP-DLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQE--------KKQYD  137 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhcc-CCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccc--------cccCc
Confidence            68999999999999999997766 778999999999999999999999986 599999999886433        23 99


Q ss_pred             EEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           99 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        99 ~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +|.+-+ ........+.+.+++++||.+++
T Consensus       138 ~vtsRA-va~L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         138 VVTSRA-VASLNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             EEEeeh-ccchHHHHHHHHHhcccCCcchh
Confidence            998865 44667788999999999998765

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.04  E-value=5.9e-09  Score=80.34  Aligned_cols=88  Identities=16%  Similarity=0.052  Sum_probs=69.3

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      +++.+...+...+...++.+|||||||+|..+..+++.   ..+++++|+++.+++.+++++..   ..+++++++|+.+
T Consensus        13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~~   86 (258)
T PRK14896         13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDALK   86 (258)
T ss_pred             CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEecccc
Confidence            34555555666666677889999999999999999986   35899999999999999988754   2479999999876


Q ss_pred             HHHHHhhcccCCCceeEEEEeCC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDAD  105 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~  105 (187)
                      .-         ...||.|+....
T Consensus        87 ~~---------~~~~d~Vv~NlP  100 (258)
T PRK14896         87 VD---------LPEFNKVVSNLP  100 (258)
T ss_pred             CC---------chhceEEEEcCC
Confidence            31         145898888754

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=99.03  E-value=6.5e-09  Score=79.68  Aligned_cols=121  Identities=21%  Similarity=0.250  Sum_probs=95.7

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HH
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LD   85 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~   85 (187)
                      +-+..|....+|-+||||.||.|...+......+. ..+|...|.++..++..++.++..++.+.++|.++|+++.  +.
T Consensus       125 ~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~  204 (311)
T PF12147_consen  125 QAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLA  204 (311)
T ss_pred             HHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhh
Confidence            33444444568899999999999998888887774 3689999999999999999999999998789999999874  33


Q ss_pred             HHhhcccCCCceeEEEEeCCCc------ccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           86 QLLKYSENEGSFDYAFVDADKD------NYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~~------~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      .+      ...++++++.+-.+      .....++.+...+.|||++|..+--|+-
T Consensus       205 ~l------~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHP  254 (311)
T PF12147_consen  205 AL------DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHP  254 (311)
T ss_pred             cc------CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCc
Confidence            32      46789999886322      2345677888999999999997766643

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.03  E-value=2.8e-10  Score=84.63  Aligned_cols=110  Identities=12%  Similarity=0.108  Sum_probs=77.3

Q ss_pred             HHHHHHHHHcCCC-EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            9 QLMAMLLRLVNAK-KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         9 ~ll~~l~~~~~~~-~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      .++..++...+.. .++|+|||+|..+..++..+.   +|+++|+++.|++.++++.....+..-..+...+..+++   
T Consensus        22 dw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~---   95 (261)
T KOG3010|consen   22 DWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL---   95 (261)
T ss_pred             HHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccccCCcccccccccccc---
Confidence            4556666666665 899999999988888888754   899999999999999987543222211223333333332   


Q ss_pred             hhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCe-EEEE
Q 029803           88 LKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVY  128 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG-~lv~  128 (187)
                          +.+++.|+|.+...  .-+...+++.+.++|+++| ++.+
T Consensus        96 ----g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen   96 ----GGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             ----CCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence                12689999987532  2356789999999999887 5554

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.01  E-value=1.2e-08  Score=79.15  Aligned_cols=101  Identities=15%  Similarity=0.021  Sum_probs=70.4

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      ++.....+...+...++.+|||||||+|..+..++...   .+|+++|+++++++.+++++..    .+++++++|+.+.
T Consensus        27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~   99 (272)
T PRK00274         27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKV   99 (272)
T ss_pred             CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcC
Confidence            33344444444455677899999999999999999874   3999999999999999987642    4799999998874


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHh
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK  118 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~  118 (187)
                      -..       .-.+|.|+..........++..+..
T Consensus       100 ~~~-------~~~~~~vv~NlPY~iss~ii~~~l~  127 (272)
T PRK00274        100 DLS-------ELQPLKVVANLPYNITTPLLFHLLE  127 (272)
T ss_pred             CHH-------HcCcceEEEeCCccchHHHHHHHHh
Confidence            111       0115777776543333445555543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.98  E-value=2.5e-08  Score=83.63  Aligned_cols=103  Identities=18%  Similarity=0.169  Sum_probs=83.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ....+||||||.|.+.+.+|...| +..++++|+....+..+.+.....++. ++.++.+|+......+     ..+++|
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p-~~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~~~~~~-----~~~sv~  419 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNP-DALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDLILNDL-----PNNSLD  419 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHhc-----Cccccc
Confidence            456899999999999999999987 899999999999999888888888875 5888888875544443     247899


Q ss_pred             EEEEeC---CCc--c------cHHHHHHHHhccCCCeEEEE
Q 029803           99 YAFVDA---DKD--N------YCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        99 ~i~~d~---~~~--~------~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|++..   ++.  +      .+.+++.+.+.|+|||.+.+
T Consensus       420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~  460 (506)
T PRK01544        420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVF  460 (506)
T ss_pred             EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEE
Confidence            998763   321  1      35789999999999999987

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=7.3e-08  Score=68.99  Aligned_cols=101  Identities=22%  Similarity=0.231  Sum_probs=79.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      .++.++|||||+|..+.++++.+.++..+.++|++|++++..++-...++.  +++.++.|....+.        .++.|
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~--------~~~VD  112 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLR--------NESVD  112 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhc--------cCCcc
Confidence            388999999999999999999987788999999999999998888776664  48899999877654        38899


Q ss_pred             EEEEeCCC--------------------cc----cHHHHHHHHhccCCCeEEEEe
Q 029803           99 YAFVDADK--------------------DN----YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        99 ~i~~d~~~--------------------~~----~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +++.....                    .+    ...++.++-.+|.|.|++.+.
T Consensus       113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv  167 (209)
T KOG3191|consen  113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV  167 (209)
T ss_pred             EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence            88876310                    01    123455555788999998774

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.97  E-value=5.1e-09  Score=81.63  Aligned_cols=91  Identities=12%  Similarity=0.107  Sum_probs=71.6

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      +++..+. ..++..+||.+||.|..+..+++.++++++|+++|.++++++.+++++..   .+++++++++..++...+.
T Consensus        10 Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~   85 (296)
T PRK00050         10 EVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLA   85 (296)
T ss_pred             HHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHH
Confidence            4444442 34567999999999999999999987679999999999999999998765   4589999999988755442


Q ss_pred             hcccCCCceeEEEEeCCC
Q 029803           89 KYSENEGSFDYAFVDADK  106 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~  106 (187)
                      .   ...++|.|++|...
T Consensus        86 ~---~~~~vDgIl~DLGv  100 (296)
T PRK00050         86 E---GLGKVDGILLDLGV  100 (296)
T ss_pred             c---CCCccCEEEECCCc
Confidence            1   01379999998543

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.95  E-value=7.7e-09  Score=85.22  Aligned_cols=101  Identities=15%  Similarity=0.138  Sum_probs=77.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           20 AKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .+.|+++|||+|-.+...+++.   ....+|+++|-++.+....++.+..++..++++++++|+.+.-.        +++
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l--------pek  258 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL--------PEK  258 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH--------SS-
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC--------CCc
Confidence            4679999999999987776654   12469999999999888888887888998899999999987522        469


Q ss_pred             eeEEEEe-----CCCcccHHHHHHHHhccCCCeEEEE
Q 029803           97 FDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        97 ~D~i~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|+|+..     +..+..++.+..+-+.|||||+++-
T Consensus       259 vDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~IP  295 (448)
T PF05185_consen  259 VDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMIP  295 (448)
T ss_dssp             EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred             eeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEeC
Confidence            9999875     2345566778878899999999874

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.94  E-value=4.6e-09  Score=77.22  Aligned_cols=83  Identities=20%  Similarity=0.209  Sum_probs=71.3

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ...+..|+|.-||.|..++.+|...   ..|++||++|..+..|++|++.+|.+++++|++||.++....+...   ...
T Consensus        92 ~~~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~---K~~  165 (263)
T KOG2730|consen   92 CMNAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKAD---KIK  165 (263)
T ss_pred             hcCcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhh---hhe
Confidence            3378899999999999999999864   4999999999999999999999999999999999999988776422   345


Q ss_pred             eeEEEEeCC
Q 029803           97 FDYAFVDAD  105 (187)
Q Consensus        97 ~D~i~~d~~  105 (187)
                      +|++|..+.
T Consensus       166 ~~~vf~spp  174 (263)
T KOG2730|consen  166 YDCVFLSPP  174 (263)
T ss_pred             eeeeecCCC
Confidence            889998753

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.92  E-value=5.1e-09  Score=77.29  Aligned_cols=90  Identities=14%  Similarity=0.216  Sum_probs=65.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..++...  ...++++|+++++++.++++        +++++++|+.+.++.+     ..++|
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~-----~~~sf   76 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAF-----PDKSF   76 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhccccc-----CCCCc
Confidence            466799999999999998887653  45789999999998887642        3678888876533222     24689


Q ss_pred             eEEEEeCC---CcccHHHHHHHHhccCC
Q 029803           98 DYAFVDAD---KDNYCNYHERLMKLLKV  122 (187)
Q Consensus        98 D~i~~d~~---~~~~~~~~~~~~~~L~~  122 (187)
                      |+|++...   ..+...+++++.+.+++
T Consensus        77 D~Vi~~~~l~~~~d~~~~l~e~~r~~~~  104 (194)
T TIGR02081        77 DYVILSQTLQATRNPEEILDEMLRVGRH  104 (194)
T ss_pred             CEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence            99998753   34456677777777664

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.90  E-value=5.9e-09  Score=81.68  Aligned_cols=103  Identities=20%  Similarity=0.295  Sum_probs=79.1

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      +.+.+.|||+|||+|-.+.+.|++.  ..+|+++|-+ ++++.|++.+..+++.+.++++++.+.+.  .+     +.++
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAG--A~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi--~L-----P~eK  127 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAG--ARKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDI--EL-----PVEK  127 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhC--cceEEEEech-HHHHHHHHHHHhcCccceEEEeecceEEE--ec-----Cccc
Confidence            5688999999999999999999875  4699999975 46699999999999999999999999875  22     1379


Q ss_pred             eeEEEEeC--CCcccHHHHHHHH----hccCCCeEEEEe
Q 029803           97 FDYAFVDA--DKDNYCNYHERLM----KLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~--~~~~~~~~~~~~~----~~L~~gG~lv~~  129 (187)
                      .|.|+..-  ..--+...++..+    +.|+|||.+.-+
T Consensus       128 VDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~P~  166 (346)
T KOG1499|consen  128 VDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIYPD  166 (346)
T ss_pred             eeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEccc
Confidence            99988752  1111222333332    799999998754

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.88  E-value=3.2e-08  Score=76.03  Aligned_cols=99  Identities=17%  Similarity=0.113  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      +...+-+-..+...++.+|||||||+|..+..++...+   +++++|+++.+++.+++++..   ..+++++++|+.+..
T Consensus        15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~   88 (253)
T TIGR00755        15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVD   88 (253)
T ss_pred             HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCC
Confidence            33333333344556778999999999999999998753   699999999999999987743   346999999987631


Q ss_pred             HHHhhcccCCCcee---EEEEeCCCcccHHHHHHHHh
Q 029803           85 DQLLKYSENEGSFD---YAFVDADKDNYCNYHERLMK  118 (187)
Q Consensus        85 ~~~~~~~~~~~~~D---~i~~d~~~~~~~~~~~~~~~  118 (187)
                      .         ..+|   +|+.+.........+.++..
T Consensus        89 ~---------~~~d~~~~vvsNlPy~i~~~il~~ll~  116 (253)
T TIGR00755        89 L---------PDFPKQLKVVSNLPYNISSPLIFKLLE  116 (253)
T ss_pred             h---------hHcCCcceEEEcCChhhHHHHHHHHhc
Confidence            1         2344   66665443333445555543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.87  E-value=1.1e-08  Score=78.75  Aligned_cols=104  Identities=20%  Similarity=0.287  Sum_probs=68.9

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHH-hcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .|++|+=|||| ...+++.+++....+..|+++|+++++.+.+++.+. ..++..+++++.+|..+....+       ..
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl-------~~  192 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDL-------KE  192 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----------
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccccc-------cc
Confidence            35699999999 567778888654446889999999999999999888 5677888999999987643332       68


Q ss_pred             eeEEEEeCCC----cccHHHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDADK----DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~~----~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ||+||+.+-.    +...+.++++.+.++||..+++-
T Consensus       193 ~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  193 YDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             -SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             CCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence            9999998643    37788999999999999999884

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=1.4e-07  Score=71.96  Aligned_cols=103  Identities=14%  Similarity=0.098  Sum_probs=73.8

Q ss_pred             HHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH-HHHHhhcc
Q 029803           13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYS   91 (187)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~   91 (187)
                      ..+...++.+|||||+|.|..|..+++.   ..+|+++|+|+..++..++.+.   ...+++++++|+... ++.+    
T Consensus        24 ~~a~~~~~d~VlEIGpG~GaLT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~~l----   93 (259)
T COG0030          24 EAANISPGDNVLEIGPGLGALTEPLLER---AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFPSL----   93 (259)
T ss_pred             HhcCCCCCCeEEEECCCCCHHHHHHHhh---cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcchhh----
Confidence            3344556789999999999999999987   4589999999999999998875   345799999999874 2321    


Q ss_pred             cCCCceeEEEEeCCCcccHHHHHHHHhc-cCC-CeEEEE
Q 029803           92 ENEGSFDYAFVDADKDNYCNYHERLMKL-LKV-GGIAVY  128 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~-L~~-gG~lv~  128 (187)
                         ..++.|+.+....-...++..+++. ..+ ..++++
T Consensus        94 ---~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~  129 (259)
T COG0030          94 ---AQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMV  129 (259)
T ss_pred             ---cCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEe
Confidence               1678888876544444454444432 222 455555

>PRK04148 hypothetical protein; Provisional

Probab=98.82  E-value=4.2e-08  Score=67.57  Aligned_cols=100  Identities=13%  Similarity=0.098  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            7 HGQLMAMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         7 ~~~ll~~l~~~~~~~~vLeiG~g~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      .+++|.......++++++|||||+|. .+..+++.   +..|+++|++++.++.++++        .++++.+|.++.-.
T Consensus         4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~   72 (134)
T PRK04148          4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNL   72 (134)
T ss_pred             HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCH
Confidence            45555555545567899999999997 66666653   67999999999988877765        26788889876433


Q ss_pred             HHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCC
Q 029803           86 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG  123 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g  123 (187)
                      .+      -+.+|+|+.-..+...+..+-.+.+.+.-+
T Consensus        73 ~~------y~~a~liysirpp~el~~~~~~la~~~~~~  104 (134)
T PRK04148         73 EI------YKNAKLIYSIRPPRDLQPFILELAKKINVP  104 (134)
T ss_pred             HH------HhcCCEEEEeCCCHHHHHHHHHHHHHcCCC
Confidence            33      267999998876666666666665555443

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.82  E-value=3e-08  Score=75.23  Aligned_cols=90  Identities=11%  Similarity=0.083  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      +.+..=+..-+...++..|||||.|+|..|..+.+.   +.+|+++|++|.++...++++.....++..++++||.... 
T Consensus        44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~-  119 (315)
T KOG0820|consen   44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT-  119 (315)
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC-
Confidence            334444444455778899999999999999999986   6799999999999999999998877778999999998764 


Q ss_pred             HHHhhcccCCCceeEEEEeCCC
Q 029803           85 DQLLKYSENEGSFDYAFVDADK  106 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~  106 (187)
                              +...||.++.....
T Consensus       120 --------d~P~fd~cVsNlPy  133 (315)
T KOG0820|consen  120 --------DLPRFDGCVSNLPY  133 (315)
T ss_pred             --------CCcccceeeccCCc
Confidence                    13679999876533

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.82  E-value=5.7e-08  Score=72.13  Aligned_cols=99  Identities=18%  Similarity=0.182  Sum_probs=72.8

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEE
Q 029803           23 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV  102 (187)
Q Consensus        23 vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~  102 (187)
                      |.||||..|+.++++++.-. ..+++++|+++..++.|+++++.+++.+++++..+|.++.++.       .+..|.|++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~-------~e~~d~ivI   72 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP-------GEDVDTIVI   72 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G-------GG---EEEE
T ss_pred             CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC-------CCCCCEEEE
Confidence            68999999999999998754 5689999999999999999999999999999999999886653       234799988


Q ss_pred             eC-CCcccHHHHHHHHhccCCCeEEEEe
Q 029803          103 DA-DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus       103 d~-~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+ .-....+++++....++....+++.
T Consensus        73 AGMGG~lI~~ILe~~~~~~~~~~~lILq  100 (205)
T PF04816_consen   73 AGMGGELIIEILEAGPEKLSSAKRLILQ  100 (205)
T ss_dssp             EEE-HHHHHHHHHHTGGGGTT--EEEEE
T ss_pred             ecCCHHHHHHHHHhhHHHhccCCeEEEe
Confidence            75 3344566777776777766677775

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=98.81  E-value=4e-08  Score=74.69  Aligned_cols=137  Identities=19%  Similarity=0.198  Sum_probs=85.1

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhC---C-CCCEEEEEeCC-----c---------------------chHHHHHHHHHh
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTI---P-EDGQITAIDVN-----R---------------------ETYEIGLPIIKK   66 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~---~-~~~~v~~iD~~-----~---------------------~~~~~a~~~~~~   66 (187)
                      ..-|..|+|+||..|.+++.++..+   . ++.+++++|.=     +                     -..+..++++.+
T Consensus        72 ~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~  151 (248)
T PF05711_consen   72 EDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFAR  151 (248)
T ss_dssp             TTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCC
T ss_pred             cCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHH
Confidence            4467789999999999887665432   1 24678898841     0                     124555666666


Q ss_pred             cCC-CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-cccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCC
Q 029803           67 AGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQV  144 (187)
Q Consensus        67 ~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~  144 (187)
                      .++ .++++++.|...+.++..     ..+++-++.+|++. +.....++.+++.|.|||+|++||....|         
T Consensus       152 ~gl~~~~v~~vkG~F~dTLp~~-----p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~~g---------  217 (248)
T PF05711_consen  152 YGLLDDNVRFVKGWFPDTLPDA-----PIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGHPG---------  217 (248)
T ss_dssp             TTTSSTTEEEEES-HHHHCCC------TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTTHH---------
T ss_pred             cCCCcccEEEECCcchhhhccC-----CCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCChH---------
Confidence            664 368999999999887764     24688999999853 55677899999999999999999988633         


Q ss_pred             CCCcccchHHHHHHHHHHhhcCCCeEEEeeecCC
Q 029803          145 PDHFRGSSRQAILDLNRSLADDPRVQLSHVALGD  178 (187)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~  178 (187)
                             .+.++.+|.+...    ....+.+++.
T Consensus       218 -------cr~AvdeF~~~~g----i~~~l~~id~  240 (248)
T PF05711_consen  218 -------CRKAVDEFRAEHG----ITDPLHPIDW  240 (248)
T ss_dssp             -------HHHHHHHHHHHTT------S--EE-SS
T ss_pred             -------HHHHHHHHHHHcC----CCCccEEecC
Confidence                   6667777765533    3334556543

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.79  E-value=1.4e-07  Score=74.42  Aligned_cols=106  Identities=20%  Similarity=0.287  Sum_probs=84.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHH--Hh---cCC-CCcEEEEEcchHHHHHHHhhcc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII--KK---AGV-DHKINFIESEALSVLDQLLKYS   91 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~--~~---~~~-~~~~~~~~~d~~~~~~~~~~~~   91 (187)
                      ...+++|-+|.|.|--..++.+ +|.-.+++-+|++|++++.++++.  ..   ... +.|++++..|+.++++.-    
T Consensus       288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a----  362 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA----  362 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh----
Confidence            4668999999999999888877 454689999999999999999542  22   222 368999999999998874    


Q ss_pred             cCCCceeEEEEeCCCcc--------cHHHHHHHHhccCCCeEEEEeC
Q 029803           92 ENEGSFDYAFVDADKDN--------YCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~--------~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                        .+.||.|++|...++        ..+++..+.+.|+++|.+++..
T Consensus       363 --~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa  407 (508)
T COG4262         363 --ADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA  407 (508)
T ss_pred             --cccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence              479999999963222        2467888889999999999853

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=98.79  E-value=2e-08  Score=69.54  Aligned_cols=111  Identities=23%  Similarity=0.341  Sum_probs=74.0

Q ss_pred             EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC------CC------cccHHHH
Q 029803           46 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA------DK------DNYCNYH  113 (187)
Q Consensus        46 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~------~~------~~~~~~~  113 (187)
                      +|+++|+++++++.++++++..++.+++++++.+.......+.     .+++|+++.+.      ++      +.....+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~-----~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al   75 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP-----EGPVDAAIFNLGYLPGGDKSITTKPETTLKAL   75 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT-------S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc-----cCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence            6899999999999999999999988899999988766543331     24899998762      22      2345678


Q ss_pred             HHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEee
Q 029803          114 ERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV  174 (187)
Q Consensus       114 ~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  174 (187)
                      +.++++|+|||++++  +.+.|+.....          ...++.+|.+.+. ...|.+...
T Consensus        76 ~~al~lL~~gG~i~i--v~Y~GH~gG~e----------E~~av~~~~~~L~-~~~~~V~~~  123 (140)
T PF06962_consen   76 EAALELLKPGGIITI--VVYPGHPGGKE----------ESEAVEEFLASLD-QKEFNVLKY  123 (140)
T ss_dssp             HHHHHHEEEEEEEEE--EE--STCHHHH----------HHHHHHHHHHTS--TTTEEEEEE
T ss_pred             HHHHHhhccCCEEEE--EEeCCCCCCHH----------HHHHHHHHHHhCC-cceEEEEEE
Confidence            999999999999998  56667544332          4445666666652 234665554

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.79  E-value=2.8e-08  Score=78.93  Aligned_cols=107  Identities=19%  Similarity=0.200  Sum_probs=71.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC---------CCCcEEEEEcchHH-HHHHHh
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---------VDHKINFIESEALS-VLDQLL   88 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---------~~~~~~~~~~d~~~-~~~~~~   88 (187)
                      ++.+|||+|||-|....-...+ . -.+++++|++++.++.|+++.....         ..-...++.+|... .+....
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~-~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA-K-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            6789999999988765555544 2 5799999999999999999983211         11246678888754 222221


Q ss_pred             hcccCCCceeEEEEeCC-------CcccHHHHHHHHhccCCCeEEEEe
Q 029803           89 KYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..  ...+||+|=+...       .+....+++++...|+|||+++..
T Consensus       140 ~~--~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT  185 (331)
T PF03291_consen  140 PP--RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGT  185 (331)
T ss_dssp             SS--TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cc--cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            11  1359999977642       233456899999999999999973

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.78  E-value=4.2e-08  Score=78.81  Aligned_cols=111  Identities=16%  Similarity=0.174  Sum_probs=68.6

Q ss_pred             CCcHHHHHHHHHH-HHHcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc
Q 029803            2 LLLTIHGQLMAML-LRLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   78 (187)
Q Consensus         2 ~~~~~~~~ll~~l-~~~~~--~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~   78 (187)
                      ++++.+.+-|... ....+  +..+||+.||.|.+++.+|..   ..+|+++|.++++++.|++|++.+++. +++++.+
T Consensus       176 QvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~---~~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~  251 (352)
T PF05958_consen  176 QVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK---AKKVIGVEIVEEAVEDARENAKLNGID-NVEFIRG  251 (352)
T ss_dssp             -SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC---SSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE-
T ss_pred             cCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh---CCeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEe
Confidence            4455555444443 33322  338999999999999999986   459999999999999999999999986 5999999


Q ss_pred             chHHHHHHHhh---------cccCCCceeEEEEeCCCcccH-HHHHHH
Q 029803           79 EALSVLDQLLK---------YSENEGSFDYAFVDADKDNYC-NYHERL  116 (187)
Q Consensus        79 d~~~~~~~~~~---------~~~~~~~~D~i~~d~~~~~~~-~~~~~~  116 (187)
                      ++.+....+..         .......+|+|++|+...... ..++.+
T Consensus       252 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~  299 (352)
T PF05958_consen  252 DAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI  299 (352)
T ss_dssp             -SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred             eccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence            88764332210         000123689999998655443 344443

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=1.1e-07  Score=78.01  Aligned_cols=121  Identities=15%  Similarity=0.107  Sum_probs=89.8

Q ss_pred             CCcHHHHHHHHHHHH----HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE
Q 029803            2 LLLTIHGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   77 (187)
Q Consensus         2 ~~~~~~~~ll~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~   77 (187)
                      +.+...+++|+..+.    ....+.++|+.||||.+++.+++.   ..+|+++|++|+.++.|++|...++.+ +.+|++
T Consensus       362 Q~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~  437 (534)
T KOG2187|consen  362 QTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGIS-NATFIV  437 (534)
T ss_pred             ccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCcc-ceeeee
Confidence            566677777777766    456678999999999999999986   469999999999999999999999987 599999


Q ss_pred             cchHHHHHHHhhcccCCCcee-EEEEeCCCcc-cHHHHHHHHhccCCCeEEEE
Q 029803           78 SEALSVLDQLLKYSENEGSFD-YAFVDADKDN-YCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        78 ~d~~~~~~~~~~~~~~~~~~D-~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |-+.+.++.+...  ...+-+ ++++|..... ...+++.+...-++.=.+.+
T Consensus       438 gqaE~~~~sl~~~--~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyv  488 (534)
T KOG2187|consen  438 GQAEDLFPSLLTP--CCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYV  488 (534)
T ss_pred             cchhhccchhccc--CCCCCceEEEECCCcccccHHHHHHHHhccCccceEEE
Confidence            9888888877533  112445 6678865444 34455555544445444433

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.69  E-value=4.1e-08  Score=72.39  Aligned_cols=95  Identities=22%  Similarity=0.230  Sum_probs=70.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      +.-|||||||+|-++..+...   +...+++|+||.|++.|.+.-    +.  -.++.+|.-+-++-      ..+.||-
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~e----~e--gdlil~DMG~Glpf------rpGtFDg  115 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVERE----LE--GDLILCDMGEGLPF------RPGTFDG  115 (270)
T ss_pred             CcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHhh----hh--cCeeeeecCCCCCC------CCCccce
Confidence            668999999999998877653   678999999999999998631    11  34777777654442      4689998


Q ss_pred             EEEe--------CCC------cccHHHHHHHHhccCCCeEEEEe
Q 029803          100 AFVD--------ADK------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus       100 i~~d--------~~~------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +++-        +++      .....||..++..|++|+.-++.
T Consensus       116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Q  159 (270)
T KOG1541|consen  116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQ  159 (270)
T ss_pred             EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEE
Confidence            8743        111      12345788899999999998885

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=5.6e-08  Score=67.12  Aligned_cols=93  Identities=18%  Similarity=0.306  Sum_probs=69.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      ..++.++|+|||+|.....++  ++....|.++|++|++++.+++|.+...++  ++++++|..+.-..       .+.|
T Consensus        47 iEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdildle~~-------~g~f  115 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILDLELK-------GGIF  115 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccchhcc-------CCeE
Confidence            478999999999999885443  444678999999999999999999887764  68999998775443       4799


Q ss_pred             eEEEEeCCC-----cccHHHHHHHHhccC
Q 029803           98 DYAFVDADK-----DNYCNYHERLMKLLK  121 (187)
Q Consensus        98 D~i~~d~~~-----~~~~~~~~~~~~~L~  121 (187)
                      |.++++...     ..-..+.+.++++.+
T Consensus       116 DtaviNppFGTk~~~aDm~fv~~al~~~~  144 (185)
T KOG3420|consen  116 DTAVINPPFGTKKKGADMEFVSAALKVAS  144 (185)
T ss_pred             eeEEecCCCCcccccccHHHHHHHHHHHH
Confidence            999998532     112345555555444

>PRK10742 putative methyltransferase; Provisional

Probab=98.67  E-value=2.6e-07  Score=69.95  Aligned_cols=87  Identities=10%  Similarity=0.192  Sum_probs=71.6

Q ss_pred             HHHHHHHHHcCCC--EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc------C--CCCcEEEEEc
Q 029803            9 QLMAMLLRLVNAK--KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA------G--VDHKINFIES   78 (187)
Q Consensus         9 ~ll~~l~~~~~~~--~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~--~~~~~~~~~~   78 (187)
                      +.|...+..+++.  +|||+.+|+|..++.++..   +++|+++|.+|......+++++..      +  ...+++++++
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~  152 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA  152 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence            4455555556666  8999999999999999986   678999999999999999998874      2  2257999999


Q ss_pred             chHHHHHHHhhcccCCCceeEEEEeC
Q 029803           79 EALSVLDQLLKYSENEGSFDYAFVDA  104 (187)
Q Consensus        79 d~~~~~~~~~~~~~~~~~~D~i~~d~  104 (187)
                      |+.+++...      ..+||+||+|+
T Consensus       153 da~~~L~~~------~~~fDVVYlDP  172 (250)
T PRK10742        153 SSLTALTDI------TPRPQVVYLDP  172 (250)
T ss_pred             cHHHHHhhC------CCCCcEEEECC
Confidence            999998764      35799999996

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.65  E-value=7.6e-08  Score=68.92  Aligned_cols=78  Identities=14%  Similarity=0.172  Sum_probs=60.3

Q ss_pred             EEEeCCcchHHHHHHHHHhc--CCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC---CCcccHHHHHHHHhccCC
Q 029803           48 TAIDVNRETYEIGLPIIKKA--GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKV  122 (187)
Q Consensus        48 ~~iD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~  122 (187)
                      +++|+|++|++.|+++....  +...+++++++|+.+. +.      ..++||+|++..   ...+....++++.++|||
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~l-p~------~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkp   73 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDL-PF------DDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP   73 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhC-CC------CCCCeeEEEecchhhcCCCHHHHHHHHHHHcCc
Confidence            47999999999998876532  2234699999998764 21      256899998874   334677889999999999


Q ss_pred             CeEEEEeCCC
Q 029803          123 GGIAVYDNTL  132 (187)
Q Consensus       123 gG~lv~~~~~  132 (187)
                      ||.+++.+..
T Consensus        74 GG~l~i~d~~   83 (160)
T PLN02232         74 GSRVSILDFN   83 (160)
T ss_pred             CeEEEEEECC
Confidence            9999887654

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.63  E-value=8.1e-08  Score=72.42  Aligned_cols=93  Identities=15%  Similarity=0.137  Sum_probs=58.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHH-HHHHHHhcCCCCcEE-EEEcchHHH-HHHHhhcccCC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEI-GLPIIKKAGVDHKIN-FIESEALSV-LDQLLKYSENE   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~-a~~~~~~~~~~~~~~-~~~~d~~~~-~~~~~~~~~~~   94 (187)
                      .+++++||+|||+|.++..+++. + ..+|+++|+++.++.. .+++       .++. +-..|+... ...+.   ..-
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~~l~~~-------~~v~~~~~~ni~~~~~~~~~---~d~  141 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAEKLRQD-------ERVKVLERTNIRYVTPADIF---PDF  141 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHhcC-------CCeeEeecCCcccCCHhHcC---CCc
Confidence            46679999999999999999986 2 4689999999977764 2221       1222 222222211 01110   012


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..+|+.|+..     ...+..+.++|++ |.+++
T Consensus       142 ~~~DvsfiS~-----~~~l~~i~~~l~~-~~~~~  169 (228)
T TIGR00478       142 ATFDVSFISL-----ISILPELDLLLNP-NDLTL  169 (228)
T ss_pred             eeeeEEEeeh-----HhHHHHHHHHhCc-CeEEE
Confidence            4677777753     2357788889999 76664

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.63  E-value=2e-06  Score=65.33  Aligned_cols=133  Identities=14%  Similarity=0.097  Sum_probs=86.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      +..++||||+|.|..+..++..+.   +|++.|.|+.|....++    .|    .+++..+  +. ..      .+.+||
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~----kg----~~vl~~~--~w-~~------~~~~fD  153 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSK----KG----FTVLDID--DW-QQ------TDFKFD  153 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHh----CC----CeEEehh--hh-hc------cCCceE
Confidence            567899999999999999998865   79999999988654443    23    3333322  22 11      146899


Q ss_pred             EEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCCC-------c-cccCCCCCCCCCcccchHHHHHHHHHHhhcCC
Q 029803           99 YAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWG-------G-TVAVPEEQVPDHFRGSSRQAILDLNRSLADDP  167 (187)
Q Consensus        99 ~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  167 (187)
                      +|-|-.   ....+...++.+.+.|+|+|.+++.-++.-       + ....|.+.-+-.-.+ ....+..|. .+-.-.
T Consensus       154 vIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e~l~~~g~~-~E~~v~~l~-~v~~p~  231 (265)
T PF05219_consen  154 VISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSELLPVKGAT-FEEQVSSLV-NVFEPA  231 (265)
T ss_pred             EEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchhhcCCCCCc-HHHHHHHHH-HHHHhc
Confidence            997532   244667889999999999999998655431       1 111221111222233 667788888 555566


Q ss_pred             CeEEEe
Q 029803          168 RVQLSH  173 (187)
Q Consensus       168 ~~~~~~  173 (187)
                      +|+...
T Consensus       232 GF~v~~  237 (265)
T PF05219_consen  232 GFEVER  237 (265)
T ss_pred             CCEEEE
Confidence            776554

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.57  E-value=3.3e-07  Score=71.68  Aligned_cols=100  Identities=14%  Similarity=0.187  Sum_probs=77.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .+.+.|||+|||+|..+.+.+.+.  ..+|+++|- .+|.+.|++.++.+.+.++++++.|-..++  ++      +++.
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAG--A~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdi--eL------PEk~  244 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAG--AKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDI--EL------PEKV  244 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhC--cceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccc--cC------chhc
Confidence            477899999999999988887763  469999997 469999999999999999999999998775  11      4789


Q ss_pred             eEEEEeCC-----CcccHHHHHHHHhccCCCeEEEE
Q 029803           98 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        98 D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+|+...-     .+...+.+-.+.+.|+|+|.+.-
T Consensus       245 DviISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  245 DVIISEPMGYMLVNERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             cEEEeccchhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence            99987631     11222233344589999998763

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.55  E-value=6.4e-07  Score=69.65  Aligned_cols=108  Identities=18%  Similarity=0.182  Sum_probs=76.8

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC-----cEEEEEcchHH-HHHHHhhc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEALS-VLDQLLKY   90 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-----~~~~~~~d~~~-~~~~~~~~   90 (187)
                      ..+...++++|||-|...+-.-++-  -+.++++|+....++.|+++.+......     .+.++.+|... .+..+.. 
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~kAg--I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e-  191 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDKAG--IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLE-  191 (389)
T ss_pred             hccccccceeccCCcccHhHhhhhc--ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhcc-
Confidence            4567789999999998877666542  4689999999999999998877533221     26788888765 3443321 


Q ss_pred             ccCCCceeEEEEeC-------CCcccHHHHHHHHhccCCCeEEEE
Q 029803           91 SENEGSFDYAFVDA-------DKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        91 ~~~~~~~D~i~~d~-------~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                       +...+||+|=+..       ..+...-++.++.+.|+|||++|-
T Consensus       192 -~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIg  235 (389)
T KOG1975|consen  192 -FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIG  235 (389)
T ss_pred             -CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEE
Confidence             1234599985542       123345578899999999999986

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.54  E-value=3.5e-07  Score=72.32  Aligned_cols=121  Identities=21%  Similarity=0.226  Sum_probs=81.9

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhC------CCCCEEEEEeCCcchHHHHHHHHHhcCCCC-cEEE
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI------PEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINF   75 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~   75 (187)
                      .+.....++..++...++.+|+|-+||+|.+...+...+      ....+++|+|+++..+..++-++...+... ...+
T Consensus        30 TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i  109 (311)
T PF02384_consen   30 TPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINI  109 (311)
T ss_dssp             --HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEE
T ss_pred             hHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccc
Confidence            356677888888877778899999999999988877643      126799999999999999998876655443 2468


Q ss_pred             EEcchHHHHHHHhhcccCCCceeEEEEeCCCc------------------------ccHHHHHHHHhccCCCeEEEE
Q 029803           76 IESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------------NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        76 ~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~------------------------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..+|++......     ....||+|+..+...                        ....++..+++.|++||.+.+
T Consensus       110 ~~~d~l~~~~~~-----~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~  181 (311)
T PF02384_consen  110 IQGDSLENDKFI-----KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAI  181 (311)
T ss_dssp             EES-TTTSHSCT-----ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             cccccccccccc-----cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeE
Confidence            888876532110     136899999874210                        012478889999999997544

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=98.54  E-value=1.3e-06  Score=67.13  Aligned_cols=149  Identities=17%  Similarity=0.214  Sum_probs=111.9

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc--CCC-CcEEEEEcchHHHHHHHhhccc
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVD-HKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~-~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      ++.+|+++|-||-|.|......+++ +.-..+..+|++...++..++.++..  ++. .++.++.||...+++...    
T Consensus       118 s~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~----  192 (337)
T KOG1562|consen  118 SHPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK----  192 (337)
T ss_pred             cCCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc----
Confidence            4678999999999999998888887 44578999999999999999988763  333 679999999999887752    


Q ss_pred             CCCceeEEEEeCCCcc-------cHHHHHHHHhccCCCeEEEEeC-CCCCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 029803           93 NEGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYDN-TLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA  164 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  164 (187)
                       .++||+|+.|.....       ...+++.+.+.||+||+++... ..|-.             .. ....+++|...+.
T Consensus       193 -~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~-------------~~-~i~e~r~~~~~~f  257 (337)
T KOG1562|consen  193 -ENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMWLH-------------LD-YIKEGRSFCYVIF  257 (337)
T ss_pred             -cCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceehHH-------------HH-HHHHHHHhHHHhc
Confidence             589999999864322       2357788889999999998742 23211             01 4455788888888


Q ss_pred             cCCCeEEEeeecC----CceEEEE
Q 029803          165 DDPRVQLSHVALG----DGITICR  184 (187)
Q Consensus       165 ~~~~~~~~~lp~~----~G~~~~~  184 (187)
                      ....+-.+..|+.    -|+.++.
T Consensus       258 ~~t~ya~ttvPTypsg~igf~l~s  281 (337)
T KOG1562|consen  258 DLTAYAITTVPTYPSGRIGFMLCS  281 (337)
T ss_pred             CccceeeecCCCCccceEEEEEec
Confidence            7777877777754    3455444

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.51  E-value=7.7e-07  Score=65.68  Aligned_cols=104  Identities=23%  Similarity=0.256  Sum_probs=62.0

Q ss_pred             CCCEEEEEcccccHHHHH---HHhh-C----CCCCEEEEEeCCcchHHHHHHHH--------------Hh-----cC---
Q 029803           19 NAKKTIEIGVFTGYSLLL---TALT-I----PEDGQITAIDVNRETYEIGLPII--------------KK-----AG---   68 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~---la~~-~----~~~~~v~~iD~~~~~~~~a~~~~--------------~~-----~~---   68 (187)
                      ++-+|+-.||++|.-+-.   ++.. .    +...+|++.|+|+.+++.|++-+              ++     .+   
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            567899999999943322   2222 1    11359999999999999997521              10     00   


Q ss_pred             -----CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEe
Q 029803           69 -----VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        69 -----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                           +..+++|...|..+..+       ..+.||+|||-.     +.+.....++.+.+.|+|||+|++-
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~-------~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDP-------PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S-------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCCc-------ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence                 11357788877776212       247999999974     3344567899999999999999984

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.49  E-value=3.5e-06  Score=67.49  Aligned_cols=120  Identities=17%  Similarity=0.167  Sum_probs=91.9

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCC---C----------------------------CC------
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---E----------------------------DG------   45 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~---~----------------------------~~------   45 (187)
                      +..+.+.-|-.++...+...++|--||+|...++.|...+   |                            .+      
T Consensus       175 LketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~  254 (381)
T COG0116         175 LKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKEL  254 (381)
T ss_pred             chHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCcc
Confidence            4455666666777777778999999999999999887543   1                            01      


Q ss_pred             -EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-------c----ccHHHH
Q 029803           46 -QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------D----NYCNYH  113 (187)
Q Consensus        46 -~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-------~----~~~~~~  113 (187)
                       .++|+|+++.+++.|+.|...+|+.+.+++.++|+..+-+.       .+.+|+|++++..       .    -|..+.
T Consensus       255 ~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~-------~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg  327 (381)
T COG0116         255 PIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEP-------LEEYGVVISNPPYGERLGSEALVAKLYREFG  327 (381)
T ss_pred             ceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCC-------CCcCCEEEeCCCcchhcCChhhHHHHHHHHH
Confidence             37899999999999999999999999999999999765321       1689999998531       1    245556


Q ss_pred             HHHHhccCCCeEEEEe
Q 029803          114 ERLMKLLKVGGIAVYD  129 (187)
Q Consensus       114 ~~~~~~L~~gG~lv~~  129 (187)
                      +.+.+.++..+..|+.
T Consensus       328 ~~lk~~~~~ws~~v~t  343 (381)
T COG0116         328 RTLKRLLAGWSRYVFT  343 (381)
T ss_pred             HHHHHHhcCCceEEEE
Confidence            6666788888888773

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=98.47  E-value=1.1e-06  Score=70.98  Aligned_cols=106  Identities=17%  Similarity=0.217  Sum_probs=81.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHHhhcccCCCce
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      ++-++||.=+|+|.=++..+..++...+|+.-|+++++.+..++|++.+++.. ++++.+.|+...+..      ....|
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~------~~~~f  122 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYS------RQERF  122 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCH------STT-E
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhh------ccccC
Confidence            45589999999999999999987645799999999999999999999999987 799999999887642      15899


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |+|=+|+. .....|++.+.+.++.||+|.+..+
T Consensus       123 D~IDlDPf-GSp~pfldsA~~~v~~gGll~vTaT  155 (377)
T PF02005_consen  123 DVIDLDPF-GSPAPFLDSALQAVKDGGLLCVTAT  155 (377)
T ss_dssp             EEEEE--S-S--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred             CEEEeCCC-CCccHhHHHHHHHhhcCCEEEEecc
Confidence            99999852 3456789999999999999998544

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.47  E-value=1.5e-06  Score=75.86  Aligned_cols=98  Identities=12%  Similarity=0.136  Sum_probs=73.7

Q ss_pred             CcHHHHHHHHHHHHH-cCCCEEEEEcccccHHHHHHHhhC---CC-----------------------------------
Q 029803            3 LLTIHGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTI---PE-----------------------------------   43 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~---~~-----------------------------------   43 (187)
                      +.+..+.-|-.+... .+...++|.+||+|...++.|...   +|                                   
T Consensus       173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~  252 (702)
T PRK11783        173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL  252 (702)
T ss_pred             CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            344455555555555 456899999999999998877531   11                                   


Q ss_pred             ---CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC
Q 029803           44 ---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD  105 (187)
Q Consensus        44 ---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~  105 (187)
                         ..+++++|+++++++.|++|+..+++.+.+++.++|+.+.....     ..++||+|++++.
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-----~~~~~d~IvtNPP  312 (702)
T PRK11783        253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL-----PKGPTGLVISNPP  312 (702)
T ss_pred             cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc-----ccCCCCEEEECCC
Confidence               23799999999999999999999999888999999997752211     1257999999853

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.47  E-value=3.2e-06  Score=71.58  Aligned_cols=98  Identities=15%  Similarity=0.080  Sum_probs=64.1

Q ss_pred             cHHHHHHHHHHHHHc-------CCCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCcchHHHHHHHHHhcCC
Q 029803            4 LTIHGQLMAMLLRLV-------NAKKTIEIGVFTGYSLLLTALTIPE-------DGQITAIDVNRETYEIGLPIIKKAGV   69 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~-------~~~~vLeiG~g~G~~~~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~~~~~~   69 (187)
                      ++.++++|..++...       ...+|||.|||+|.+.+.++..++.       ...++++|+++..+..++.++...+.
T Consensus         9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~   88 (524)
T TIGR02987         9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL   88 (524)
T ss_pred             cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC
Confidence            344555555444221       4568999999999999988876631       25789999999999999999877652


Q ss_pred             CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC
Q 029803           70 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA  104 (187)
Q Consensus        70 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~  104 (187)
                       ....+.+.|..........  ...+.||+|+..+
T Consensus        89 -~~~~i~~~d~l~~~~~~~~--~~~~~fD~IIgNP  120 (524)
T TIGR02987        89 -LEINVINFNSLSYVLLNIE--SYLDLFDIVITNP  120 (524)
T ss_pred             -CCceeeecccccccccccc--cccCcccEEEeCC
Confidence             2345666664432110000  0135899999774

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=98.47  E-value=5.7e-06  Score=61.27  Aligned_cols=103  Identities=17%  Similarity=0.172  Sum_probs=81.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      +..++.||||..++.++++.+..+ ..++++.|+++..++.|.+++.++++.+++++..+|.+..+..       +..+|
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~-------~d~~d   87 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLEL-------EDEID   87 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCc-------cCCcC
Confidence            445599999999999999998766 7899999999999999999999999999999999998654432       34799


Q ss_pred             EEEEeC-CCcccHHHHHHHHhccCCCeEEEEe
Q 029803           99 YAFVDA-DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        99 ~i~~d~-~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .|++.+ .-.-...++++-.+.|+.--.+++.
T Consensus        88 ~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQ  119 (226)
T COG2384          88 VIVIAGMGGTLIREILEEGKEKLKGVERLILQ  119 (226)
T ss_pred             EEEEeCCcHHHHHHHHHHhhhhhcCcceEEEC
Confidence            998875 3334556666666666654456653

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.44  E-value=5.9e-06  Score=60.94  Aligned_cols=107  Identities=18%  Similarity=0.219  Sum_probs=82.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+||++|-|.|.....+-.. + -.+-+.||..|+.++..+++-  ..-..++-++.+.-.+.++.+.     ++.|
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~-~-p~~H~IiE~hp~V~krmr~~g--w~ek~nViil~g~WeDvl~~L~-----d~~F  170 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEA-P-PDEHWIIEAHPDVLKRMRDWG--WREKENVIILEGRWEDVLNTLP-----DKHF  170 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhc-C-CcceEEEecCHHHHHHHHhcc--cccccceEEEecchHhhhcccc-----ccCc
Confidence            68899999999999888777654 3 356678899999888776653  2223568888888888888774     5679


Q ss_pred             eEEEEeCCCcc---cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           98 DYAFVDADKDN---YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        98 D~i~~d~~~~~---~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      |=|+-|...+.   ...+.+.+.++|||+|++-+-|.+-
T Consensus       171 DGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfNg~~  209 (271)
T KOG1709|consen  171 DGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFNGLG  209 (271)
T ss_pred             ceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence            99999975444   4567888899999999998865553

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.44  E-value=5.1e-06  Score=61.75  Aligned_cols=118  Identities=16%  Similarity=0.223  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHH-------hcCC-CCcEEEEEcc
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-------KAGV-DHKINFIESE   79 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-------~~~~-~~~~~~~~~d   79 (187)
                      ..+++ .+...+....+|||||.|...+..|...+ -.+.+|||+.+...+.|+...+       ..+. ...+++.++|
T Consensus        32 ~~il~-~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd  109 (205)
T PF08123_consen   32 SKILD-ELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD  109 (205)
T ss_dssp             HHHHH-HTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred             HHHHH-HhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence            34443 33566788999999999999888876654 4579999999998877765332       2333 2568889999


Q ss_pred             hHHH--HHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           80 ALSV--LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        80 ~~~~--~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ..+.  ...+      -...|+||++..  .+.....+......||+|..||....+.
T Consensus       110 fl~~~~~~~~------~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs~~~~~  161 (205)
T PF08123_consen  110 FLDPDFVKDI------WSDADVVFVNNTCFDPDLNLALAELLLELKPGARIISTKPFC  161 (205)
T ss_dssp             TTTHHHHHHH------GHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEESS-SS
T ss_pred             ccccHhHhhh------hcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEECCCcC
Confidence            8652  2332      146899999753  2344455667778999999988754443

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.43  E-value=6.6e-06  Score=60.67  Aligned_cols=101  Identities=20%  Similarity=0.250  Sum_probs=70.8

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~   94 (187)
                      ..++..|+|+|+..|.|+..+++.+.++++|+++|+.|-.           .. ..+.++++|+.+  .+..+... ...
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~-~~V~~iq~d~~~~~~~~~l~~~-l~~  109 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PI-PGVIFLQGDITDEDTLEKLLEA-LGG  109 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cC-CCceEEeeeccCccHHHHHHHH-cCC
Confidence            4467899999999999999999998877889999998642           11 348888888743  22222111 123


Q ss_pred             CceeEEEEeCCC--------ccc------HHHHHHHHhccCCCeEEEEeC
Q 029803           95 GSFDYAFVDADK--------DNY------CNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        95 ~~~D~i~~d~~~--------~~~------~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .++|+|++|..+        .++      ...++.+...|+|||.+++..
T Consensus       110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~  159 (205)
T COG0293         110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKV  159 (205)
T ss_pred             CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEE
Confidence            457999999644        111      224555568999999999863

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.41  E-value=9.5e-07  Score=64.42  Aligned_cols=110  Identities=18%  Similarity=0.250  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHc-----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            6 IHGQLMAMLLRLV-----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         6 ~~~~ll~~l~~~~-----~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      ..-+|...+-+..     ++.++||+||+.|.++..++....+..+|+++|+.+.           ... ..+..+++|.
T Consensus         5 a~~KL~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~   72 (181)
T PF01728_consen    5 AAFKLYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDI   72 (181)
T ss_dssp             HHHHHHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGG
T ss_pred             HHHHHHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeeccc
Confidence            3344444444433     4489999999999999999998744689999999876           111 2355555554


Q ss_pred             HH-----HHHHHhhcccCCCceeEEEEeCCCc--------c------cHHHHHHHHhccCCCeEEEEe
Q 029803           81 LS-----VLDQLLKYSENEGSFDYAFVDADKD--------N------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        81 ~~-----~~~~~~~~~~~~~~~D~i~~d~~~~--------~------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+     .+.....  ...+++|+|++|..+.        .      ....+..+.+.|++||.+++.
T Consensus        73 ~~~~~~~~i~~~~~--~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K  138 (181)
T PF01728_consen   73 TNPENIKDIRKLLP--ESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIK  138 (181)
T ss_dssp             EEEEHSHHGGGSHG--TTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEE
T ss_pred             chhhHHHhhhhhcc--ccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEE
Confidence            32     2222110  0136899999997211        1      122344556889999988874

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.41  E-value=4.7e-06  Score=65.34  Aligned_cols=92  Identities=12%  Similarity=0.114  Sum_probs=71.5

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      +++..| ...++..++|..+|.|..+..++..++ +++|+++|.++++++.+++.+..+  .+++++++++..++...+.
T Consensus        11 Evl~~L-~~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~   86 (305)
T TIGR00006        11 EVVEGL-NIKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLD   86 (305)
T ss_pred             HHHHhc-CcCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHH
Confidence            344443 234667999999999999999999887 599999999999999999988754  4689999999887655442


Q ss_pred             hcccCCCceeEEEEeCCC
Q 029803           89 KYSENEGSFDYAFVDADK  106 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~  106 (187)
                      ..  ...++|.|++|...
T Consensus        87 ~~--~~~~vDgIl~DLGv  102 (305)
T TIGR00006        87 EL--LVTKIDGILVDLGV  102 (305)
T ss_pred             hc--CCCcccEEEEeccC
Confidence            21  13579999998543

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.40  E-value=2.6e-06  Score=63.30  Aligned_cols=105  Identities=18%  Similarity=0.139  Sum_probs=72.6

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+||-+|+.+|.+...++.-..+++.|+++|.++......-...++.   .|+-.+.+|+.....-.    .--+.
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~----~lv~~  143 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYR----MLVEM  143 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGT----TTS--
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhh----ccccc
Confidence            557889999999999999999998877899999999996544443333322   35777888886432211    01368


Q ss_pred             eeEEEEeCCCcc-cHHHHHHHHhccCCCeEEEE
Q 029803           97 FDYAFVDADKDN-YCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        97 ~D~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|+||.|-..++ ..-+..++...||+||.+++
T Consensus       144 VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i  176 (229)
T PF01269_consen  144 VDVIFQDVAQPDQARIAALNARHFLKPGGHLII  176 (229)
T ss_dssp             EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccEEEecCCChHHHHHHHHHHHhhccCCcEEEE
Confidence            999999975544 44567777789999998886

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.40  E-value=1.2e-06  Score=61.18  Aligned_cols=58  Identities=19%  Similarity=0.253  Sum_probs=50.2

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803           22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      +++||||+.|..+.+++...+ ..+++++|++|++++.++++++.+++. ++++++....
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeee
Confidence            489999999999999998765 679999999999999999999988775 4777776654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.38  E-value=1.7e-05  Score=55.48  Aligned_cols=75  Identities=19%  Similarity=0.294  Sum_probs=57.8

Q ss_pred             HHHHHHHHHH----cCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHHHHHHHHhcC--CCCcEEEEEc
Q 029803            8 GQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAG--VDHKINFIES   78 (187)
Q Consensus         8 ~~ll~~l~~~----~~~~~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~--~~~~~~~~~~   78 (187)
                      .+++..+...    .++.+|+|+|||.|+.+..++..+   .++.+|+++|.+++..+.+++..+..+  ...+.++..+
T Consensus        10 ~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   89 (141)
T PF13679_consen   10 AELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG   89 (141)
T ss_pred             HHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence            4555555555    778899999999999999999822   137899999999999999999988766  4345666666


Q ss_pred             chHH
Q 029803           79 EALS   82 (187)
Q Consensus        79 d~~~   82 (187)
                      +..+
T Consensus        90 ~~~~   93 (141)
T PF13679_consen   90 DIAD   93 (141)
T ss_pred             chhh
Confidence            6544

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.37  E-value=2.3e-06  Score=68.69  Aligned_cols=111  Identities=19%  Similarity=0.212  Sum_probs=87.2

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      .-.++.+|||.++..|.=+.++|..+...+.|++.|.+...+...+.++...|+.+ .-+.+.|..++-...     ..+
T Consensus       238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~~~~-----~~~  311 (460)
T KOG1122|consen  238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFPEKE-----FPG  311 (460)
T ss_pred             CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCcccccccc-----cCc
Confidence            34577899999999999999999988867999999999999999999999999764 566777776542111     134


Q ss_pred             ceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCC
Q 029803           96 SFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        96 ~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +||-|.+|+..+.                         -...+..+.+++++||+||.+.+.
T Consensus       312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS  373 (460)
T KOG1122|consen  312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS  373 (460)
T ss_pred             ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence            8999999964322                         024667778999999999997655

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=98.29  E-value=3e-06  Score=65.31  Aligned_cols=104  Identities=20%  Similarity=0.224  Sum_probs=68.4

Q ss_pred             CCCEEEEEcccccH----HHHHHHhhCCC----CCEEEEEeCCcchHHHHHHHHHh-----cCCC---------------
Q 029803           19 NAKKTIEIGVFTGY----SLLLTALTIPE----DGQITAIDVNRETYEIGLPIIKK-----AGVD---------------   70 (187)
Q Consensus        19 ~~~~vLeiG~g~G~----~~~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~-----~~~~---------------   70 (187)
                      ++-+|+-.||++|-    .+..+.+.++.    ..+|++.|+|...++.|+.-+=.     .+++               
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence            37799999999993    44444454432    57899999999999998753211     1111               


Q ss_pred             --------CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEe
Q 029803           71 --------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        71 --------~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                              ..+.|...|..+..+       ..+.||+|||-.     +.+.-...++..+..|+|||+|++-
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~-------~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSP-------FLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEEChHHhcccEEeecCCCCCcc-------ccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence                    123333333322111       246799999863     3445567889999999999999983

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.28  E-value=9.5e-06  Score=63.99  Aligned_cols=97  Identities=13%  Similarity=0.167  Sum_probs=75.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      -...+|+|.|.|..+..+...+|   ++-+++.+...+..+.+++. .|    ++.+.+|.++..          ++-|+
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~----------P~~da  239 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDT----------PKGDA  239 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccccccC----------CCcCe
Confidence            47899999999999999999766   68888888777777777664 33    778888887653          45569


Q ss_pred             EEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803          100 AFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLWG  134 (187)
Q Consensus       100 i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      ||+.-     ..++...++++|++.|+|||.|++-+...+
T Consensus       240 I~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p  279 (342)
T KOG3178|consen  240 IWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTP  279 (342)
T ss_pred             EEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence            98752     345678899999999999999888666543

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.27  E-value=4.3e-06  Score=64.63  Aligned_cols=119  Identities=10%  Similarity=0.006  Sum_probs=79.2

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      ++.+..-+...+...+...|||||+|.|..|..+++..   .+++++|.++...+..++.+.   ...+++++++|+.++
T Consensus        15 ~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~   88 (262)
T PF00398_consen   15 DPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKW   88 (262)
T ss_dssp             HHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTS
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecchhcc
Confidence            34455555555566688999999999999999999874   699999999999998888765   345799999999874


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCC---CeEEEEeCCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKV---GGIAVYDNTL  132 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~---gG~lv~~~~~  132 (187)
                      -....    .......|+..........++.++...-+.   ..++++..-+
T Consensus        89 ~~~~~----~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~  136 (262)
T PF00398_consen   89 DLYDL----LKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEV  136 (262)
T ss_dssp             CGGGH----CSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHH
T ss_pred             ccHHh----hcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhh
Confidence            11100    012445666654443444566666653333   3556654333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.24  E-value=1.4e-06  Score=67.97  Aligned_cols=105  Identities=23%  Similarity=0.253  Sum_probs=68.6

Q ss_pred             CCCEEEEEcccccHHHHH----HHhhCC---CCCEEEEEeCCcchHHHHHHHH------------------Hhc-----C
Q 029803           19 NAKKTIEIGVFTGYSLLL----TALTIP---EDGQITAIDVNRETYEIGLPII------------------KKA-----G   68 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~----la~~~~---~~~~v~~iD~~~~~~~~a~~~~------------------~~~-----~   68 (187)
                      ++-+|+-.||.+|--+-.    +....+   ...+|+++|+++.+++.|++-+                  ...     +
T Consensus       115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~  194 (287)
T PRK10611        115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG  194 (287)
T ss_pred             CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence            446999999999943222    223222   1368999999999999998642                  100     0


Q ss_pred             -------CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEe
Q 029803           69 -------VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        69 -------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                             +...++|...|..+.  .+    ...+.||+|+|-.     +.+.....++.+.+.|+|||+|++.
T Consensus       195 ~~~v~~~lr~~V~F~~~NL~~~--~~----~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG  261 (287)
T PRK10611        195 LVRVRQELANYVDFQQLNLLAK--QW----AVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG  261 (287)
T ss_pred             eEEEChHHHccCEEEcccCCCC--CC----ccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                   113445555555431  00    0136899999842     3445667899999999999999883

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.23  E-value=3.1e-06  Score=61.14  Aligned_cols=99  Identities=9%  Similarity=0.113  Sum_probs=75.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      ...+.|+|+|+|-.+...+..   ..+|+++|.+|..+..|.+|+.-.+. .+++++.+|+.+.-         -+..|.
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~---------fe~ADv   99 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYD---------FENADV   99 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEeccccccc---------ccccce
Confidence            378999999999998877765   45999999999999999999876665 46999999998751         156788


Q ss_pred             EEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803          100 AFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus       100 i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |+|.-     -.+..-..++.+++-|+.++.++-..+
T Consensus       100 vicEmlDTaLi~E~qVpV~n~vleFLr~d~tiiPq~v  136 (252)
T COG4076         100 VICEMLDTALIEEKQVPVINAVLEFLRYDPTIIPQEV  136 (252)
T ss_pred             eHHHHhhHHhhcccccHHHHHHHHHhhcCCccccHHH
Confidence            87642     112233456777788999998876544

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.19  E-value=1.6e-05  Score=61.79  Aligned_cols=112  Identities=10%  Similarity=0.089  Sum_probs=68.3

Q ss_pred             HHHHHHHH---HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            9 QLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         9 ~ll~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      .+|..+..   ..+|++|||+|+|.|..+..+...++.-.+++++|.++.+.+.++..+......... ......   ..
T Consensus        20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~-~~~~~~---~~   95 (274)
T PF09243_consen   20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNA-EWRRVL---YR   95 (274)
T ss_pred             HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccc-hhhhhh---hc
Confidence            44444443   357899999999999776666665564568999999999999999887653321111 011111   11


Q ss_pred             HHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEe
Q 029803           86 QLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..    ......|+|++..     .......+++++++.+++ -+|+++
T Consensus        96 ~~----~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVE  139 (274)
T PF09243_consen   96 DF----LPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP-VLVLVE  139 (274)
T ss_pred             cc----ccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC-cEEEEc
Confidence            11    0123459998764     124455677888887766 334443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=98.17  E-value=7.4e-05  Score=54.25  Aligned_cols=124  Identities=19%  Similarity=0.173  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      --...+.++-..+|..|+|+|+-.|.+++++|...   ....+|.++|++-...+.+-..      ..++.++.+++.+.
T Consensus        57 D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dp  130 (237)
T COG3510          57 DMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDP  130 (237)
T ss_pred             HHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCH
Confidence            33456677777899999999999999999998754   2236899999876554332221      34699999997552


Q ss_pred             --HHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeEEEEeCCCCCccc
Q 029803           84 --LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTV  137 (187)
Q Consensus        84 --~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~  137 (187)
                        ..+.... ....+-=+++.|.+  +++....++...++|..|.++++.|...+++.
T Consensus       131 ai~eqi~~~-~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~dlp  187 (237)
T COG3510         131 AIAEQIRRL-KNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVNDLP  187 (237)
T ss_pred             HHHHHHHHH-hcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccCCC
Confidence              2222111 00122224455544  34566778888899999999999998887764

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.15  E-value=7.7e-05  Score=59.10  Aligned_cols=110  Identities=11%  Similarity=0.025  Sum_probs=76.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcccC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      .++..++|+|||+|.=+..++.++.+   ..+++.+|+|.+.++.+.+++....++ -.+.-+++|..+.+..+... ..
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~-~~  153 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRP-EN  153 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccc-cc
Confidence            34558999999999988877777642   367999999999999999998733433 23445889887765443210 00


Q ss_pred             CCceeEEEEeC------CCcccHHHHHHHHh-ccCCCeEEEE
Q 029803           94 EGSFDYAFVDA------DKDNYCNYHERLMK-LLKVGGIAVY  128 (187)
Q Consensus        94 ~~~~D~i~~d~------~~~~~~~~~~~~~~-~L~~gG~lv~  128 (187)
                      .....+++.-+      .+.....+++++.+ .|+||+.+++
T Consensus       154 ~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi  195 (319)
T TIGR03439       154 RSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI  195 (319)
T ss_pred             cCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence            12345554432      23455678899988 9999998877

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=4.4e-05  Score=60.71  Aligned_cols=103  Identities=16%  Similarity=0.208  Sum_probs=85.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      +.+|+|--+|+|.=++.++...+ ..+++.=|++|++.+.+++|+..+... ...+++.|+...+.+.      ...||+
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~-~~~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~------~~~fd~  124 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETG-VVKVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHEL------HRAFDV  124 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcC-ccEEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhc------CCCccE
Confidence            89999999999999999998876 348999999999999999999987433 4667779998877653      478999


Q ss_pred             EEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803          100 AFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus       100 i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |=+|+- .....|++.+.+.++.||++.+..+
T Consensus       125 IDiDPF-GSPaPFlDaA~~s~~~~G~l~vTAT  155 (380)
T COG1867         125 IDIDPF-GSPAPFLDAALRSVRRGGLLCVTAT  155 (380)
T ss_pred             EecCCC-CCCchHHHHHHHHhhcCCEEEEEec
Confidence            988852 3445688999999999999998544

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.12  E-value=6.9e-06  Score=60.54  Aligned_cols=120  Identities=14%  Similarity=0.166  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      +..++..+....+...|-|.|||.+..+..    ++...+|.++|+.+.                +-.++.+|.... | 
T Consensus        60 vd~iI~~l~~~~~~~viaD~GCGdA~la~~----~~~~~~V~SfDLva~----------------n~~Vtacdia~v-P-  117 (219)
T PF05148_consen   60 VDVIIEWLKKRPKSLVIADFGCGDAKLAKA----VPNKHKVHSFDLVAP----------------NPRVTACDIANV-P-  117 (219)
T ss_dssp             HHHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S----------------STTEEES-TTS--S-
T ss_pred             HHHHHHHHHhcCCCEEEEECCCchHHHHHh----cccCceEEEeeccCC----------------CCCEEEecCccC-c-
Confidence            445666666555567899999999987743    333468999998642                123566776442 1 


Q ss_pred             HhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHHhh
Q 029803           87 LLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLA  164 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  164 (187)
                      +     ++++.|+++....  -.++.++++++++.||+||.+.+..+...-                  ..+++|.+.+.
T Consensus       118 L-----~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~SRf------------------~~~~~F~~~~~  174 (219)
T PF05148_consen  118 L-----EDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVKSRF------------------ENVKQFIKALK  174 (219)
T ss_dssp             -------TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEGGG-------------------S-HHHHHHHHH
T ss_pred             C-----CCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEecccC------------------cCHHHHHHHHH
Confidence            1     2589999987653  367899999999999999999987665211                  12788888877


Q ss_pred             cCCCeEEE
Q 029803          165 DDPRVQLS  172 (187)
Q Consensus       165 ~~~~~~~~  172 (187)
                      .- +|...
T Consensus       175 ~~-GF~~~  181 (219)
T PF05148_consen  175 KL-GFKLK  181 (219)
T ss_dssp             CT-TEEEE
T ss_pred             HC-CCeEE
Confidence            43 45443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=98.06  E-value=0.00029  Score=53.16  Aligned_cols=98  Identities=22%  Similarity=0.261  Sum_probs=61.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      ..+++||-+|=..-.+ +.++.... ..+|+.+|+++..++..++..++.+++  ++.++.|..+.+|.-     -.++|
T Consensus        43 L~gk~il~lGDDDLtS-lA~al~~~-~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~-----~~~~f  113 (243)
T PF01861_consen   43 LEGKRILFLGDDDLTS-LALALTGL-PKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEE-----LRGKF  113 (243)
T ss_dssp             STT-EEEEES-TT-HH-HHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TT-----TSS-B
T ss_pred             ccCCEEEEEcCCcHHH-HHHHhhCC-CCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHH-----HhcCC
Confidence            3689999999554444 44443333 479999999999999999999999986  999999998877752     15799


Q ss_pred             eEEEEeCC--CcccHHHHHHHHhccCCCe
Q 029803           98 DYAFVDAD--KDNYCNYHERLMKLLKVGG  124 (187)
Q Consensus        98 D~i~~d~~--~~~~~~~~~~~~~~L~~gG  124 (187)
                      |++|.|+.  .+...-|+.+..+.||..|
T Consensus       114 D~f~TDPPyT~~G~~LFlsRgi~~Lk~~g  142 (243)
T PF01861_consen  114 DVFFTDPPYTPEGLKLFLSRGIEALKGEG  142 (243)
T ss_dssp             SEEEE---SSHHHHHHHHHHHHHTB-STT
T ss_pred             CEEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence            99999974  3456678999999998776

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.06  E-value=5.3e-05  Score=55.47  Aligned_cols=102  Identities=20%  Similarity=0.219  Sum_probs=76.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH--HHHhhcccCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL--DQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~   94 (187)
                      ..++.+||=+|+.+|.+...++.-.+ .+.++++|.++......-..+++   -+|+-.+.+|+...-  ..+      -
T Consensus        74 i~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~P~~Y~~~------V  143 (231)
T COG1889          74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARKPEKYRHL------V  143 (231)
T ss_pred             cCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh---CCCceeeecccCCcHHhhhh------c
Confidence            56788999999999999999998877 89999999999866554444443   245767778875432  222      3


Q ss_pred             CceeEEEEeCCCcc-cHHHHHHHHhccCCCeEEEE
Q 029803           95 GSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        95 ~~~D~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +..|+|+.|-..++ ..-+..++..-|++||.+++
T Consensus       144 e~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i  178 (231)
T COG1889         144 EKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVI  178 (231)
T ss_pred             ccccEEEEecCCchHHHHHHHHHHHhcccCCeEEE
Confidence            67999999976544 44467777889999997665

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.99  E-value=2e-05  Score=61.60  Aligned_cols=80  Identities=15%  Similarity=0.305  Sum_probs=48.9

Q ss_pred             CCEEEEEcccccHH-HHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-CCCCcEEEEEcchHH-HHHHHhhcccCCCc
Q 029803           20 AKKTIEIGVFTGYS-LLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALS-VLDQLLKYSENEGS   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~-~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~   96 (187)
                      ..++||||||.-.. .+-.++. . +.++++.|+++..++.|+++++.+ ++.++++++...... ++..+..   ..+.
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~-~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~---~~e~  177 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKL-Y-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQ---PNER  177 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHH-H---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT-----S-
T ss_pred             ceEeecCCccHHHHHHHHhhhh-c-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhc---ccce
Confidence            35799999987643 3333333 2 789999999999999999999998 899999997764332 3333221   2468


Q ss_pred             eeEEEEeC
Q 029803           97 FDYAFVDA  104 (187)
Q Consensus        97 ~D~i~~d~  104 (187)
                      ||+..|.+
T Consensus       178 ~dftmCNP  185 (299)
T PF05971_consen  178 FDFTMCNP  185 (299)
T ss_dssp             EEEEEE--
T ss_pred             eeEEecCC
Confidence            99999975

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.99  E-value=0.00012  Score=56.85  Aligned_cols=85  Identities=14%  Similarity=0.165  Sum_probs=70.1

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..+....+|..-|.|..+..+++.+++.++++++|.+|++++.|++.+...+  +++++++++..+....+...  ...+
T Consensus        21 ~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~~~--~i~~   96 (314)
T COG0275          21 PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALKEL--GIGK   96 (314)
T ss_pred             cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHHhc--CCCc
Confidence            4456789999999999999999999878899999999999999999987655  68999999987765554322  2458


Q ss_pred             eeEEEEeCC
Q 029803           97 FDYAFVDAD  105 (187)
Q Consensus        97 ~D~i~~d~~  105 (187)
                      +|-|++|..
T Consensus        97 vDGiL~DLG  105 (314)
T COG0275          97 VDGILLDLG  105 (314)
T ss_pred             eeEEEEecc
Confidence            999998853

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.98  E-value=4.1e-06  Score=68.92  Aligned_cols=100  Identities=13%  Similarity=0.089  Sum_probs=57.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHH-hcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      -+.+||+|||+|.++.++...     .|+++-..+.-...++..+. ..|++..+.++   +..-++      ...+.||
T Consensus       118 iR~~LDvGcG~aSF~a~l~~r-----~V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~---~s~rLP------fp~~~fD  183 (506)
T PF03141_consen  118 IRTALDVGCGVASFGAYLLER-----NVTTMSFAPNDEHEAQVQFALERGVPAMIGVL---GSQRLP------FPSNAFD  183 (506)
T ss_pred             eEEEEeccceeehhHHHHhhC-----CceEEEcccccCCchhhhhhhhcCcchhhhhh---cccccc------CCccchh
Confidence            357999999999999998864     33443333322222222222 12443222111   011122      2368999


Q ss_pred             EEEEeCC----CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           99 YAFVDAD----KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        99 ~i~~d~~----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +|.+...    ...-.-++-++-++|+|||+++++....
T Consensus       184 mvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~ppv  222 (506)
T PF03141_consen  184 MVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGPPV  222 (506)
T ss_pred             hhhcccccccchhcccceeehhhhhhccCceEEecCCcc
Confidence            9988642    2222335566679999999999876553

; GO: 0008168 methyltransferase activity

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.95  E-value=4.7e-05  Score=59.80  Aligned_cols=94  Identities=17%  Similarity=0.168  Sum_probs=63.8

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      +++..|. ..++..++|..-|.|..+..+++.++ +++++++|.+|++++.+++++...  .+++.+++++..++...+.
T Consensus        11 Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~-~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~   86 (310)
T PF01795_consen   11 EVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLP-NGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLK   86 (310)
T ss_dssp             HHHHHHT---TT-EEEETT-TTSHHHHHHHHT-T-T-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHH
T ss_pred             HHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCC-CCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHH
Confidence            4444443 45667999999999999999999998 599999999999999999887644  5789999999876544432


Q ss_pred             hcccCCCceeEEEEeCCCc
Q 029803           89 KYSENEGSFDYAFVDADKD  107 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~~  107 (187)
                      .. ....++|-|++|...+
T Consensus        87 ~~-~~~~~~dgiL~DLGvS  104 (310)
T PF01795_consen   87 EL-NGINKVDGILFDLGVS  104 (310)
T ss_dssp             HT-TTTS-EEEEEEE-S--
T ss_pred             Hc-cCCCccCEEEEccccC
Confidence            21 1246899999996443

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=0.0001  Score=52.16  Aligned_cols=107  Identities=17%  Similarity=0.178  Sum_probs=67.5

Q ss_pred             HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC--cEEEEEcchHHHHHHHhhccc
Q 029803           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH--KINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      +..++++|||+|.|. |-.++.+|...+ ...|...|-+++.+...++....+-.+.  ++.++.-+...  .+...   
T Consensus        26 n~~rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~--aqsq~---   99 (201)
T KOG3201|consen   26 NKIRGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWG--AQSQQ---   99 (201)
T ss_pred             hHHhHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhh--hHHHH---
Confidence            455778999999884 555666666554 7899999999999988887765432111  12111111111  11111   


Q ss_pred             CCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEE
Q 029803           93 NEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        93 ~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +...||.|++...   .+......+.++.+|+|.|.-++
T Consensus       100 eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~  138 (201)
T KOG3201|consen  100 EQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALL  138 (201)
T ss_pred             hhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeE
Confidence            2468999987431   34455677888899999987555

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.92  E-value=0.0001  Score=58.46  Aligned_cols=92  Identities=12%  Similarity=0.167  Sum_probs=64.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .+++++|||||++|.++-.+++.   +.+|++||..+ +..    .+.   -.++++.+.+|.....+.       .+.+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-l~~----~L~---~~~~V~h~~~d~fr~~p~-------~~~v  271 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-MAQ----SLM---DTGQVEHLRADGFKFRPP-------RKNV  271 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-cCH----hhh---CCCCEEEEeccCcccCCC-------CCCC
Confidence            57789999999999999999885   67999999654 211    121   135799999998776442       3689


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCC--eEEEE
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVG--GIAVY  128 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~g--G~lv~  128 (187)
                      |++++|... ......+.+.+.|..|  ...|+
T Consensus       272 DwvVcDmve-~P~rva~lm~~Wl~~g~cr~aIf  303 (357)
T PRK11760        272 DWLVCDMVE-KPARVAELMAQWLVNGWCREAIF  303 (357)
T ss_pred             CEEEEeccc-CHHHHHHHHHHHHhcCcccEEEE
Confidence            999999643 3334555666666655  34444

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.90  E-value=6.7e-05  Score=56.32  Aligned_cols=99  Identities=20%  Similarity=0.136  Sum_probs=72.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEE-EcchHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~   95 (187)
                      ..+++.+||||+.||.++..+++.-  ..+|+++|..-..++.--+      ...++..+ ..++....+.-.     .+
T Consensus        77 ~~k~kv~LDiGsSTGGFTd~lLq~g--Ak~VyavDVG~~Ql~~kLR------~d~rV~~~E~tN~r~l~~~~~-----~~  143 (245)
T COG1189          77 DVKGKVVLDIGSSTGGFTDVLLQRG--AKHVYAVDVGYGQLHWKLR------NDPRVIVLERTNVRYLTPEDF-----TE  143 (245)
T ss_pred             CCCCCEEEEecCCCccHHHHHHHcC--CcEEEEEEccCCccCHhHh------cCCcEEEEecCChhhCCHHHc-----cc
Confidence            4588899999999999999988863  4699999998766553222      13455544 344444322211     34


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..|++++|...-.....+..+..++++++.+++
T Consensus       144 ~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~  176 (245)
T COG1189         144 KPDLIVIDVSFISLKLILPALLLLLKDGGDLVL  176 (245)
T ss_pred             CCCeEEEEeehhhHHHHHHHHHHhcCCCceEEE
Confidence            789999998887888889999999999987775

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.89  E-value=9.7e-05  Score=54.16  Aligned_cols=105  Identities=18%  Similarity=0.221  Sum_probs=74.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC------CCcEEEEEcchHHHHHHHhhccc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV------DHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      +...+.|||||.|.....++..+| +.-+.++|+.-..-+..++++.....      -.++.+...++..+++.+...  
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fP-dtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~k--  136 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFP-DTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEK--  136 (249)
T ss_pred             ccceEEeeccCccchhhhccccCc-cceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhh--
Confidence            445799999999999999999988 78899999988888888888776541      235788889998888877433  


Q ss_pred             CCCceeEEEEe-CCCc----------ccHHHHHHHHhccCCCeEEEE
Q 029803           93 NEGSFDYAFVD-ADKD----------NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        93 ~~~~~D~i~~d-~~~~----------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                        +..+-+|.- .++.          .....+.+..=+|++||.+..
T Consensus       137 --gqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~yt  181 (249)
T KOG3115|consen  137 --GQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYT  181 (249)
T ss_pred             --cccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEE
Confidence              333333322 2111          112355566678999998865

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=97.86  E-value=0.00019  Score=55.17  Aligned_cols=114  Identities=11%  Similarity=0.135  Sum_probs=67.9

Q ss_pred             cCCCEEEEEccccc--HHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh---hcc-
Q 029803           18 VNAKKTIEIGVFTG--YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL---KYS-   91 (187)
Q Consensus        18 ~~~~~vLeiG~g~G--~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~~~-   91 (187)
                      ..-...||||||.-  .++-.+|+...++++|+.+|.+|-.+..++..+..... .+..++++|..+.-.-+.   ... 
T Consensus        67 ~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~  145 (267)
T PF04672_consen   67 AGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGL  145 (267)
T ss_dssp             T---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC
T ss_pred             cCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhc
Confidence            35578999999944  46677877776799999999999999999998875432 358899999876422220   000 


Q ss_pred             -cCCCceeEEEEe-----CCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           92 -ENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        92 -~~~~~~D~i~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                       +-..+.-++++.     .+.......+..+...|.||++|++....
T Consensus       146 lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t  192 (267)
T PF04672_consen  146 LDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT  192 (267)
T ss_dssp             --TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred             CCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence             113344444443     13356778899999999999999997554

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.85  E-value=4.9e-05  Score=55.38  Aligned_cols=97  Identities=18%  Similarity=0.208  Sum_probs=70.4

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++++|||.|+|+|-.++..++..  ...|+..|++|-....++-|.+.+++.  +.+.+.|...          .+..
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aG--A~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~~g----------~~~~  142 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAG--AAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADLIG----------SPPA  142 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhh--hHHHHhcCCChHHHHHhhcchhhccce--eEEeeccccC----------CCcc
Confidence            5578899999999999988877763  468999999999888889898888753  7788877643          2578


Q ss_pred             eeEEEEeC---CCcccHHHHHHHHhccCCCeEEEE
Q 029803           97 FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        97 ~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ||+++..-   ++......+. +...++..|..++
T Consensus       143 ~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl  176 (218)
T COG3897         143 FDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL  176 (218)
T ss_pred             eeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEE
Confidence            99998752   3444444555 4455555554443

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.84  E-value=1.7e-05  Score=65.01  Aligned_cols=116  Identities=20%  Similarity=0.175  Sum_probs=93.9

Q ss_pred             HHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029803           12 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS   91 (187)
Q Consensus        12 ~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   91 (187)
                      ..+.+..++-+|||.=+++|.-++..|..++.-.++++-|.+++.++..++|++.++..+.++..++|+.-..-....  
T Consensus       102 ~~~~~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~--  179 (525)
T KOG1253|consen  102 ALLKREEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPM--  179 (525)
T ss_pred             chhhhccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccc--
Confidence            344556678899999999999999999999855789999999999999999999988888899999998764332210  


Q ss_pred             cCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                       ....||+|-+|.. .....|++.+.+.+..||+|++.-+
T Consensus       180 -~~~~FDvIDLDPy-Gs~s~FLDsAvqav~~gGLL~vT~T  217 (525)
T KOG1253|consen  180 -VAKFFDVIDLDPY-GSPSPFLDSAVQAVRDGGLLCVTCT  217 (525)
T ss_pred             -cccccceEecCCC-CCccHHHHHHHHHhhcCCEEEEEec
Confidence             1368999999853 2345688999999999999998544

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.79  E-value=4.1e-05  Score=57.23  Aligned_cols=98  Identities=12%  Similarity=0.080  Sum_probs=72.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ....++||||+.|+....+....  -.+++.+|.+..|++.++..- ..+  -......+|- ++++ +     .++++|
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~--vekli~~DtS~~M~~s~~~~q-dp~--i~~~~~v~DE-E~Ld-f-----~ens~D  139 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEG--VEKLIMMDTSYDMIKSCRDAQ-DPS--IETSYFVGDE-EFLD-F-----KENSVD  139 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcc--hhheeeeecchHHHHHhhccC-CCc--eEEEEEecch-hccc-c-----cccchh
Confidence            44689999999999988876642  468999999999998877542 112  2244566663 3444 2     368999


Q ss_pred             EEEEe---CCCcccHHHHHHHHhccCCCeEEEE
Q 029803           99 YAFVD---ADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        99 ~i~~d---~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +|+..   ++..+.+..+.+|...|||+|.++.
T Consensus       140 LiisSlslHW~NdLPg~m~~ck~~lKPDg~Fia  172 (325)
T KOG2940|consen  140 LIISSLSLHWTNDLPGSMIQCKLALKPDGLFIA  172 (325)
T ss_pred             hhhhhhhhhhhccCchHHHHHHHhcCCCccchh
Confidence            99876   3556778889999999999999886

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.76  E-value=0.00024  Score=54.90  Aligned_cols=118  Identities=21%  Similarity=0.224  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHcC-------CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC-----------
Q 029803            7 HGQLMAMLLRLVN-------AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-----------   68 (187)
Q Consensus         7 ~~~ll~~l~~~~~-------~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-----------   68 (187)
                      ...++..|-...+       +.+||--|||.|..+..+|..   +..+.+.|.|--|+-..+=.+....           
T Consensus        37 ~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~  113 (270)
T PF07942_consen   37 YSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFV  113 (270)
T ss_pred             HHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecce
Confidence            3455555555544       468999999999999999986   6799999998877654433222100           


Q ss_pred             ----------------------------CCCcEEEEEcchHHHHHHHhhcccCCCceeEE----EEeCCCcccHHHHHHH
Q 029803           69 ----------------------------VDHKINFIESEALSVLDQLLKYSENEGSFDYA----FVDADKDNYCNYHERL  116 (187)
Q Consensus        69 ----------------------------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i----~~d~~~~~~~~~~~~~  116 (187)
                                                  ...++.+..||..+....-    ...++||.|    |+| ..++..++++.+
T Consensus       114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~----~~~~~~d~VvT~FFID-TA~Ni~~Yi~tI  188 (270)
T PF07942_consen  114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPD----ENKGSFDVVVTCFFID-TAENIIEYIETI  188 (270)
T ss_pred             ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCc----ccCCcccEEEEEEEee-chHHHHHHHHHH
Confidence                                        0123444445544432210    013689988    454 356788999999


Q ss_pred             HhccCCCeEEEEeCCC
Q 029803          117 MKLLKVGGIAVYDNTL  132 (187)
Q Consensus       117 ~~~L~~gG~lv~~~~~  132 (187)
                      .++|||||+.|=-..+
T Consensus       189 ~~lLkpgG~WIN~GPL  204 (270)
T PF07942_consen  189 EHLLKPGGYWINFGPL  204 (270)
T ss_pred             HHHhccCCEEEecCCc
Confidence            9999999977644444

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=97.75  E-value=7.6e-05  Score=61.35  Aligned_cols=114  Identities=17%  Similarity=0.190  Sum_probs=86.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      .+..+|-+|-|.|....++-..+| ..++++++++|++++.++.++.-..- .+..+...|..+++.+..+...+...||
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~d  372 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPD  372 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCc
Confidence            345688888888999888888887 78999999999999999999864332 3567788888888877765433467899


Q ss_pred             EEEEeCCCcc------------cHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803           99 YAFVDADKDN------------YCNYHERLMKLLKVGGIAVYDNTLWG  134 (187)
Q Consensus        99 ~i~~d~~~~~------------~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      ++++|.+...            .+.++..+...|.|.|+++++-+.++
T Consensus       373 vl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~  420 (482)
T KOG2352|consen  373 VLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN  420 (482)
T ss_pred             EEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence            9999853221            13456666689999999999766643

>PHA01634 hypothetical protein

Probab=97.71  E-value=0.00013  Score=49.57  Aligned_cols=74  Identities=14%  Similarity=0.044  Sum_probs=54.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++++|+|||.+.|.++++++..-  ..+|+++|+++...+..+++++.+..-+...... +    .+.      .=++|
T Consensus        27 vk~KtV~dIGA~iGdSaiYF~l~G--AK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~-e----W~~------~Y~~~   93 (156)
T PHA01634         27 VYQRTIQIVGADCGSSALYFLLRG--ASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG-E----WNG------EYEDV   93 (156)
T ss_pred             ecCCEEEEecCCccchhhHHhhcC--ccEEEEeccCHHHHHHHHHHhhhheeeeceeecc-c----ccc------cCCCc
Confidence            478999999999999999998763  4689999999999999999887654332222111 1    111      13789


Q ss_pred             eEEEEeC
Q 029803           98 DYAFVDA  104 (187)
Q Consensus        98 D~i~~d~  104 (187)
                      |...+|.
T Consensus        94 Di~~iDC  100 (156)
T PHA01634         94 DIFVMDC  100 (156)
T ss_pred             ceEEEEc
Confidence            9999986

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.68  E-value=0.00057  Score=59.62  Aligned_cols=104  Identities=21%  Similarity=0.194  Sum_probs=70.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-------CC----CCEEEEEeCCcchH--------------HHHHHHHHhc-----C
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-------PE----DGQITAIDVNRETY--------------EIGLPIIKKA-----G   68 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-------~~----~~~v~~iD~~~~~~--------------~~a~~~~~~~-----~   68 (187)
                      +.-+|+|+|=|+|.+.+.....+       ++    ..+++++|..|-..              +.+++..+.+     +
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            34689999999999877766544       21    24789999765222              2222222221     1


Q ss_pred             C------CC--cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-----cc-cHHHHHHHHhccCCCeEEEE
Q 029803           69 V------DH--KINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----DN-YCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        69 ~------~~--~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-----~~-~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +      .+  +.+++.||+.+.++.+      ...+|++|.|+-.     +. ..++++++.+++++||++.-
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~------~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t  204 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLPQL------DARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLAT  204 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHHhc------cccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE
Confidence            1      11  3558889999988876      3579999999622     11 35689999999999999985

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.67  E-value=6.5e-05  Score=56.65  Aligned_cols=85  Identities=20%  Similarity=0.241  Sum_probs=52.1

Q ss_pred             HHHHHHHcCC--CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc---CC-----CCcEEEEEcch
Q 029803           11 MAMLLRLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---GV-----DHKINFIESEA   80 (187)
Q Consensus        11 l~~l~~~~~~--~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~-----~~~~~~~~~d~   80 (187)
                      |...+...++  .+|||..+|.|..++.++..   +++|+++|-+|-.....+.-++.+   ..     ..+++++++|+
T Consensus        65 l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~  141 (234)
T PF04445_consen   65 LAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA  141 (234)
T ss_dssp             HHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C
T ss_pred             HHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH
Confidence            3333434444  38999999999999988864   679999999998776666444321   11     14799999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeC
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDA  104 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~  104 (187)
                      .++++..      .++||+|++|+
T Consensus       142 ~~~L~~~------~~s~DVVY~DP  159 (234)
T PF04445_consen  142 LEYLRQP------DNSFDVVYFDP  159 (234)
T ss_dssp             CCHCCCH------SS--SEEEE--
T ss_pred             HHHHhhc------CCCCCEEEECC
Confidence            9887621      58999999995

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.66  E-value=5.8e-05  Score=57.85  Aligned_cols=114  Identities=17%  Similarity=0.082  Sum_probs=66.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCc--------------------------
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK--------------------------   72 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~--------------------------   72 (187)
                      ++.++||||||.-..  .+..+.+.-.+|+..|..++-.+..+++++..+.-++                          
T Consensus        56 ~g~~llDiGsGPtiy--~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~  133 (256)
T PF01234_consen   56 KGETLLDIGSGPTIY--QLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR  133 (256)
T ss_dssp             -EEEEEEES-TT--G--GGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHH--hhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence            566899999987432  2222222235899999999988888887765432111                          


Q ss_pred             --EEEEEcchHHHHHHHhhcccCCCceeEEEEeC-------CCcccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           73 --INFIESEALSVLDQLLKYSENEGSFDYAFVDA-------DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        73 --~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~-------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                        -+++.+|..+.-+ +......+++||.|+...       +.+.|...++++..+|||||.+++..++-..
T Consensus       134 ~Vk~Vv~cDV~~~~p-l~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t  204 (256)
T PF01234_consen  134 AVKQVVPCDVTQPNP-LDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGST  204 (256)
T ss_dssp             HEEEEEE--TTSSST-TTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-S
T ss_pred             hhceEEEeeccCCCC-CCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCce
Confidence              1244444433100 000000023599998763       4456788899999999999999997766433

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.60  E-value=0.00088  Score=46.19  Aligned_cols=103  Identities=21%  Similarity=0.218  Sum_probs=66.1

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH-HHHHhhcccCC-CceeEE
Q 029803           23 TIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENE-GSFDYA  100 (187)
Q Consensus        23 vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~-~~~D~i  100 (187)
                      ++|+|||+|... .++...+....++++|+++.++..++..... .....+.+..++.... ++-      .. ..||++
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~d~~  123 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPF------EDSASFDLV  123 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCC------CCCCceeEE
Confidence            999999999977 4444333124889999999988885544432 2111156777776542 111      12 379999


Q ss_pred             EEeCCC--cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803          101 FVDADK--DNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus       101 ~~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ......  ......+..+.+.++|+|.+++.....
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  158 (257)
T COG0500         124 ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR  158 (257)
T ss_pred             eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            332211  113678888999999999998876554

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.59  E-value=0.00011  Score=59.22  Aligned_cols=107  Identities=18%  Similarity=0.211  Sum_probs=82.1

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...++..++++|||.|....+++.. . ..++++++.++..+..+.......++.++..++.++.....       .+++
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~i~~f-~-~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-------fedn  177 (364)
T KOG1269|consen  107 SCFPGSKVLDVGTGVGGPSRYIAVF-K-KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-------FEDN  177 (364)
T ss_pred             cCcccccccccCcCcCchhHHHHHh-c-cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-------CCcc
Confidence            3456667999999999999999875 2 68999999999998888888777777766666665554321       2467


Q ss_pred             ceeEEE-EeC--CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           96 SFDYAF-VDA--DKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        96 ~~D~i~-~d~--~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .||.+. ++.  ..+.....++++++.++|||+.+..+.
T Consensus       178 ~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~  216 (364)
T KOG1269|consen  178 TFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEW  216 (364)
T ss_pred             ccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHH
Confidence            899885 443  345677889999999999999998544

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.57  E-value=0.00026  Score=53.84  Aligned_cols=97  Identities=14%  Similarity=0.160  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      +..++..+-.......|-|+|||-+..+.    .  ....|+++|+.+-                +-+++.+|..+. + 
T Consensus       168 ld~ii~~ik~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a~----------------~~~V~~cDm~~v-P-  223 (325)
T KOG3045|consen  168 LDVIIRKIKRRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVAV----------------NERVIACDMRNV-P-  223 (325)
T ss_pred             HHHHHHHHHhCcCceEEEecccchhhhhh----c--cccceeeeeeecC----------------CCceeeccccCC-c-
Confidence            34556666555566679999999987754    2  2458999998532                345667777652 2 


Q ss_pred             HhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           87 LLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                           .++++.|+++....  -.+..++++++.+.|++||.+.+..+-
T Consensus       224 -----l~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAEv~  266 (325)
T KOG3045|consen  224 -----LEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAEVK  266 (325)
T ss_pred             -----CccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEehh
Confidence                 13689998876543  357889999999999999999886554

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.50  E-value=0.0011  Score=52.84  Aligned_cols=117  Identities=19%  Similarity=0.232  Sum_probs=78.5

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh--h
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL--K   89 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--~   89 (187)
                      +...+..+|||.++.-|.-++.+.+.+-+   .+.|++=|.++..+........... ..+..+...++..+ +...  .
T Consensus       151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~-p~~~~~~  228 (375)
T KOG2198|consen  151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLF-PNIYLKD  228 (375)
T ss_pred             cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-Ccceeeecccceec-ccccccc
Confidence            45678899999999999999888887742   3589999999998888887774433 23444444444322 1110  0


Q ss_pred             cc-cCCCceeEEEEeCCCcc--------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           90 YS-ENEGSFDYAFVDADKDN--------------------------YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        90 ~~-~~~~~~D~i~~d~~~~~--------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .+ .....||-|++|...+.                          -..++.+.+++||+||.+|.+.+..
T Consensus       229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence            00 12468999999942100                          0235677789999999999986654

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.38  E-value=0.00052  Score=52.15  Aligned_cols=151  Identities=13%  Similarity=0.080  Sum_probs=83.5

Q ss_pred             HHHHHHHHH-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            9 QLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         9 ~ll~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      .+...+... ..|.+|+|||||.--.++..... +++..++++|++..+++...+.+...+..  .++...|.....   
T Consensus        94 ~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl~~~~---  167 (251)
T PF07091_consen   94 EFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDLLSDP---  167 (251)
T ss_dssp             HHHHHHCCCS---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-TTTSH---
T ss_pred             HHHHHHHhcCCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeeeeccC---
Confidence            344444333 34899999999988887766644 34789999999999999999999888754  555555654432   


Q ss_pred             hhcccCCCceeEEEEeCCCcc----cHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHHh
Q 029803           88 LKYSENEGSFDYAFVDADKDN----YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSL  163 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~~~----~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  163 (187)
                           .....|+.++-=..+.    ....--.+++.++..=++|-- ..         ..-..+.++ +......+.+..
T Consensus       168 -----~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~~~~~vVSf-Pt---------rSL~gR~~g-m~~~y~~~fe~~  231 (251)
T PF07091_consen  168 -----PKEPADLALLLKTLPCLERQRRGAGLELLDALRSPHVVVSF-PT---------RSLGGRNKG-MEQTYSAWFEAL  231 (251)
T ss_dssp             -----TTSEESEEEEET-HHHHHHHSTTHHHHHHHHSCESEEEEEE-ES----------------TT-HHHCHHHHHHHH
T ss_pred             -----CCCCcchhhHHHHHHHHHHHhcchHHHHHHHhCCCeEEEec-cc---------cccccCccc-cccCHHHHHHHh
Confidence                 2468999987421111    111212223444443333321 11         111222333 444456666666


Q ss_pred             hcCCCeEEEeeecCCceE
Q 029803          164 ADDPRVQLSHVALGDGIT  181 (187)
Q Consensus       164 ~~~~~~~~~~lp~~~G~~  181 (187)
                      ...-.+.....-+++-+.
T Consensus       232 ~~~~~~~~~~~~~~~Elv  249 (251)
T PF07091_consen  232 AAERGWIVDRLTFGNELV  249 (251)
T ss_dssp             CCTTCEEEEEEEETTEEE
T ss_pred             cccCCceeeeeeccccee
Confidence            667777777777776543

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.36  E-value=0.003  Score=49.69  Aligned_cols=106  Identities=15%  Similarity=0.117  Sum_probs=71.5

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      .+.+.+||-+|+| .|..+...|+++. ..+|+.+|++++.++.|++ +   |.......-+.+..+.+.+...+.....
T Consensus       167 vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~---Ga~~~~~~~~~~~~~~~~~~v~~~~g~~  241 (354)
T KOG0024|consen  167 VKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-F---GATVTDPSSHKSSPQELAELVEKALGKK  241 (354)
T ss_pred             cccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-h---CCeEEeeccccccHHHHHHHHHhhcccc
Confidence            5577899999998 6788888888887 7899999999999999998 4   4332222222222233232222212234


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .+|+.|--   ......++.+...++++|.+++..
T Consensus       242 ~~d~~~dC---sG~~~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  242 QPDVTFDC---SGAEVTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             CCCeEEEc---cCchHHHHHHHHHhccCCEEEEec
Confidence            58888743   234456777789999999987754

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=97.28  E-value=0.0033  Score=45.72  Aligned_cols=104  Identities=14%  Similarity=0.214  Sum_probs=64.6

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHH--HHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALS--VLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~--~~~~~~~~~~~   93 (187)
                      ..+..+|||+|+..|.|+...-+...+++.|.++|+..-           ... .-++++.+ |..+  ....+... ..
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~-~Ga~~i~~~dvtdp~~~~ki~e~-lp  133 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPP-EGATIIQGNDVTDPETYRKIFEA-LP  133 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCC-CCcccccccccCCHHHHHHHHHh-CC
Confidence            346789999999999999988888866999999998431           111 12445544 3322  11111111 13


Q ss_pred             CCceeEEEEeCCC-------cccHHH-------HHHHHhccCCCeEEEEeCCCCCc
Q 029803           94 EGSFDYAFVDADK-------DNYCNY-------HERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        94 ~~~~D~i~~d~~~-------~~~~~~-------~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      +.+.|+|+.|-.+       .+....       +-.+...++|+|.+++.  +|.|
T Consensus       134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK--~w~g  187 (232)
T KOG4589|consen  134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCK--LWDG  187 (232)
T ss_pred             CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEE--EecC
Confidence            5689999998422       111122       23334788899999984  5555

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.25  E-value=0.0044  Score=49.44  Aligned_cols=98  Identities=19%  Similarity=0.175  Sum_probs=69.9

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ...++++|+-+|.| .|..++.+|+++  +.+|+++|.+++..+.|++.    +.   -.++.....+..+..      .
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~--ga~Via~~~~~~K~e~a~~l----GA---d~~i~~~~~~~~~~~------~  227 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAM--GAEVIAITRSEEKLELAKKL----GA---DHVINSSDSDALEAV------K  227 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc--CCeEEEEeCChHHHHHHHHh----CC---cEEEEcCCchhhHHh------H
Confidence            45678888888876 567888999976  48999999999998888875    22   223332222333333      2


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +.+|+|+.-..    ...++...+.|+++|.+++-...
T Consensus       228 ~~~d~ii~tv~----~~~~~~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         228 EIADAIIDTVG----PATLEPSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             hhCcEEEECCC----hhhHHHHHHHHhcCCEEEEECCC
Confidence            34998887542    56778889999999999986544

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.23  E-value=0.00052  Score=50.08  Aligned_cols=109  Identities=15%  Similarity=0.110  Sum_probs=64.3

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchH----HHHHHH-HHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETY----EIGLPI-IKKAGVDHKINFIESEALSVLDQLLKY   90 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~----~~a~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~   90 (187)
                      ...++.+|+|+-.|.|+++.-++....+.++|+++-..+...    +..+.+ +.+.....+.+.+-.+.....      
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~------  118 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG------  118 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC------
Confidence            356778999999999999999999988788999876543211    101111 010011122333333322211      


Q ss_pred             ccCCCceeEEEEeC----------CCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           91 SENEGSFDYAFVDA----------DKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        91 ~~~~~~~D~i~~d~----------~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                        ..+..|+++...          ...........+++.|||||++.+.|..
T Consensus       119 --~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~  168 (238)
T COG4798         119 --APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHR  168 (238)
T ss_pred             --CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecc
Confidence              134556665421          1223345788889999999999887654

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.22  E-value=0.0021  Score=54.09  Aligned_cols=130  Identities=20%  Similarity=0.273  Sum_probs=89.0

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      +..+.+++..++...+..+|.|..||+|......+..+..   ...+++.|.++..+..++.|.--++....+...++|.
T Consensus       171 P~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dt  250 (489)
T COG0286         171 PREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDT  250 (489)
T ss_pred             hHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccc
Confidence            4566777777777656678999999999988887776642   2679999999999999999988877754456666665


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCC----------------------------cccHHHHHHHHhccCCCe---EEEEe
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGG---IAVYD  129 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~----------------------------~~~~~~~~~~~~~L~~gG---~lv~~  129 (187)
                      ....... . ....++||+|+..+..                            .....++.++...|+|||   +++.+
T Consensus       251 l~~~~~~-~-~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~  328 (489)
T COG0286         251 LSNPKHD-D-KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD  328 (489)
T ss_pred             ccCCccc-c-cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence            4421110 0 0123679988654210                            112457888899999865   55556


Q ss_pred             CCCCCc
Q 029803          130 NTLWGG  135 (187)
Q Consensus       130 ~~~~~~  135 (187)
                      +++..|
T Consensus       329 gvlfr~  334 (489)
T COG0286         329 GVLFRG  334 (489)
T ss_pred             CcCcCC
Confidence            666555

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=97.15  E-value=0.016  Score=40.50  Aligned_cols=113  Identities=17%  Similarity=0.194  Sum_probs=61.2

Q ss_pred             HHHHHHHHHcCC--CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            9 QLMAMLLRLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         9 ~ll~~l~~~~~~--~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      ..|...+.....  .-|||+|-|.|.+=-.+-..+| +.+|+.+|-.-..-.        ...++.-.++.||+.+.++.
T Consensus        16 ~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p-~R~I~vfDR~l~~hp--------~~~P~~~~~ilGdi~~tl~~   86 (160)
T PF12692_consen   16 DCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFP-DRRIYVFDRALACHP--------SSTPPEEDLILGDIRETLPA   86 (160)
T ss_dssp             HHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH---SS-EEEEESS--S-G--------GG---GGGEEES-HHHHHHH
T ss_pred             HHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCC-CCeEEEEeeecccCC--------CCCCchHheeeccHHHHhHH
Confidence            445555554433  4699999999999889999988 899999996422111        11233456999999998887


Q ss_pred             HhhcccCCCceeEEEEeCCCcc---cHHH----HHHHHhccCCCeEEEEeCCCC
Q 029803           87 LLKYSENEGSFDYAFVDADKDN---YCNY----HERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~~~~---~~~~----~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +...   +.+.-++..|....+   -..+    -..+.++|.|||+++...-+.
T Consensus        87 ~~~~---g~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la~gGi~vS~~pl~  137 (160)
T PF12692_consen   87 LARF---GAGAALAHADIGTGDKEKDDATAAWLSPLIAPVLAPGGIMVSGQPLY  137 (160)
T ss_dssp             HHHH----S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEEEEEEEEESS---
T ss_pred             HHhc---CCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCccc
Confidence            3222   456677777743211   1111    222347999999999876553

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.12  E-value=0.00061  Score=53.88  Aligned_cols=115  Identities=17%  Similarity=0.092  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHH-------HHHHHHHhcCCC-CcEEEE
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYE-------IGLPIIKKAGVD-HKINFI   76 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~-------~a~~~~~~~~~~-~~~~~~   76 (187)
                      ++..-+++.++...+++.|.|--.|||......|..   ++-|.+.|++-.++.       ..+.|+++++.. .-+.++
T Consensus       194 AeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl  270 (421)
T KOG2671|consen  194 AELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVL  270 (421)
T ss_pred             hhHHHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhhee
Confidence            344556677777888999999999999988777765   679999999877665       567899998865 446788


Q ss_pred             EcchHHHHHHHhhcccCCCceeEEEEeCCC------------------------------cc------cHHHHHHHHhcc
Q 029803           77 ESEALSVLDQLLKYSENEGSFDYAFVDADK------------------------------DN------YCNYHERLMKLL  120 (187)
Q Consensus        77 ~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~------------------------------~~------~~~~~~~~~~~L  120 (187)
                      .+|....  .+.    ....||.|++|...                              ..      +-+.+....+.|
T Consensus       271 ~~D~sn~--~~r----sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L  344 (421)
T KOG2671|consen  271 TADFSNP--PLR----SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRL  344 (421)
T ss_pred             eecccCc--chh----hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhh
Confidence            8887552  111    14689999999310                              00      123455667899


Q ss_pred             CCCeEEEE
Q 029803          121 KVGGIAVY  128 (187)
Q Consensus       121 ~~gG~lv~  128 (187)
                      ..||.+++
T Consensus       345 ~~ggrlv~  352 (421)
T KOG2671|consen  345 VDGGRLVF  352 (421)
T ss_pred             hcCceEEE
Confidence            99999987

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=97.06  E-value=0.0056  Score=46.30  Aligned_cols=107  Identities=18%  Similarity=0.184  Sum_probs=70.6

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ++.++.+||-+|+++|.+...+..-..+.+-|+++|.++..=.......++   -.++-.+..|+....+..-    .-.
T Consensus       153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk---RtNiiPIiEDArhP~KYRm----lVg  225 (317)
T KOG1596|consen  153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK---RTNIIPIIEDARHPAKYRM----LVG  225 (317)
T ss_pred             eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc---cCCceeeeccCCCchheee----eee
Confidence            367888999999999999999988887789999999987543222222111   1345556667654221100    023


Q ss_pred             ceeEEEEeCCCcccHHH-HHHHHhccCCCeEEEEe
Q 029803           96 SFDYAFVDADKDNYCNY-HERLMKLLKVGGIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~-~~~~~~~L~~gG~lv~~  129 (187)
                      -.|+||.|..++..... .=++.--||+||-+++.
T Consensus       226 mVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  226 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             eEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEE
Confidence            57999999766554443 33445689999988774

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=97.04  E-value=0.00026  Score=54.91  Aligned_cols=104  Identities=14%  Similarity=0.030  Sum_probs=72.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      .+..|+|+.+|.||+++.+.-... ...|+++|.+|..++..+++++.+++..+..++.+|....-+        ....|
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~--------~~~Ad  264 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKP--------RLRAD  264 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCc--------cccch
Confidence            457899999999999994433333 578999999999999999999998887777777777654322        35778


Q ss_pred             EEEEeCCCcccHHHHHHHHhccCCC-e-EEEEeCCC
Q 029803           99 YAFVDADKDNYCNYHERLMKLLKVG-G-IAVYDNTL  132 (187)
Q Consensus        99 ~i~~d~~~~~~~~~~~~~~~~L~~g-G-~lv~~~~~  132 (187)
                      -|.+..-++.- .-.-.+.++|+|. | ++-++..+
T Consensus       265 rVnLGLlPSse-~~W~~A~k~Lk~eggsilHIHenV  299 (351)
T KOG1227|consen  265 RVNLGLLPSSE-QGWPTAIKALKPEGGSILHIHENV  299 (351)
T ss_pred             heeeccccccc-cchHHHHHHhhhcCCcEEEEeccc
Confidence            88776433221 2223344677764 3 55555444

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=97.03  E-value=0.006  Score=49.20  Aligned_cols=102  Identities=13%  Similarity=0.086  Sum_probs=69.9

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcccCCCc
Q 029803           19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEGS   96 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~   96 (187)
                      ++.+|+-+|+| .|..+..+++... ..+|+.+|.+++.++.|++....    ..+..... +.........    ....
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t----~g~g  238 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELT----GGRG  238 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHh----CCCC
Confidence            44489999998 5777777888776 68999999999999999986421    11111111 2222222221    1247


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|++|-...   ....++++.++++++|.+++-.+.
T Consensus       239 ~D~vie~~G---~~~~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         239 ADVVIEAVG---SPPALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             CCEEEECCC---CHHHHHHHHHHhcCCCEEEEEecc
Confidence            999886543   556889999999999999986554

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.02  E-value=0.00048  Score=54.63  Aligned_cols=108  Identities=17%  Similarity=0.178  Sum_probs=65.3

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ...|++|||+|.|.|.-...+-..+|.-..++.+|.+|..-+.........+. ........|.......+    +....
T Consensus       111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~l----p~ad~  185 (484)
T COG5459         111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSL----PAADL  185 (484)
T ss_pred             CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCC----Cccce
Confidence            44788999999998876665556666446788888888665555443332221 11112222222211111    11356


Q ss_pred             eeEEEEe------CCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVD------ADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d------~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+++++-      .........++.+|.++.|||.+++-
T Consensus       186 ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lViv  224 (484)
T COG5459         186 YTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIV  224 (484)
T ss_pred             eehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEE
Confidence            7877653      23344566899999999999998873

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.99  E-value=0.034  Score=42.39  Aligned_cols=119  Identities=13%  Similarity=0.143  Sum_probs=82.8

Q ss_pred             HHHHHHHH----HHHHcCCCEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc
Q 029803            6 IHGQLMAM----LLRLVNAKKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   78 (187)
Q Consensus         6 ~~~~ll~~----l~~~~~~~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~   78 (187)
                      ..+++++.    ++....+...+|+|+|+-.-+..+...+.+   -.+++.+|++...+...-+.+......-.+.-+++
T Consensus        61 tEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~  140 (321)
T COG4301          61 TEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCG  140 (321)
T ss_pred             hHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhh
Confidence            34445544    344678999999999999888888887753   26899999999888665555443222334667888


Q ss_pred             chHHHHHHHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEE
Q 029803           79 EALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        79 d~~~~~~~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |....+..+.+    .++-=++|+..     .+.....|+.++...|+||-++++
T Consensus       141 ~~~~~La~~~~----~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll  191 (321)
T COG4301         141 DYELALAELPR----GGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL  191 (321)
T ss_pred             hHHHHHhcccC----CCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence            88777766531    23333455542     345567799999999999998887

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.93  E-value=0.003  Score=52.47  Aligned_cols=102  Identities=13%  Similarity=0.154  Sum_probs=59.6

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...+-++|+|..+|.|.+++.|...     .|..+-..|..-...-..+-..|+   +-+++ |-++.++..      +.
T Consensus       362 ~~~~iRNVMDMnAg~GGFAAAL~~~-----~VWVMNVVP~~~~ntL~vIydRGL---IG~yh-DWCE~fsTY------PR  426 (506)
T PF03141_consen  362 KWGRIRNVMDMNAGYGGFAAALIDD-----PVWVMNVVPVSGPNTLPVIYDRGL---IGVYH-DWCEAFSTY------PR  426 (506)
T ss_pred             cccceeeeeeecccccHHHHHhccC-----CceEEEecccCCCCcchhhhhccc---chhcc-chhhccCCC------Cc
Confidence            3445568999999999999888642     244444333211111111222232   22332 344444443      68


Q ss_pred             ceeEEEEeCCC------cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           96 SFDYAFVDADK------DNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        96 ~~D~i~~d~~~------~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .||+|..++-.      -.....+=++-++|+|+|.+++.|..
T Consensus       427 TYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD~~  469 (506)
T PF03141_consen  427 TYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRDTV  469 (506)
T ss_pred             chhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEeccH
Confidence            99999877422      12345666677999999999996554

; GO: 0008168 methyltransferase activity

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.90  E-value=0.0025  Score=52.09  Aligned_cols=59  Identities=24%  Similarity=0.351  Sum_probs=51.6

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803           22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      .+||||+|||-.+...+.+.  .-.|+++|.-..|.+.|++...++|.+++++++...+.+
T Consensus        69 ~vLdigtGTGLLSmMAvrag--aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte  127 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAG--ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE  127 (636)
T ss_pred             EEEEccCCccHHHHHHHHhc--CCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence            48999999999998888775  357999999999999999999999999999988866644

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.83  E-value=0.00021  Score=52.70  Aligned_cols=95  Identities=14%  Similarity=0.096  Sum_probs=64.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      ..|.++||+|+|.|-.+..++..+.   +|++.|.|..|....+++    +    ..++.  ..+....       +-+|
T Consensus       111 ~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk----~----ynVl~--~~ew~~t-------~~k~  170 (288)
T KOG3987|consen  111 QEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK----N----YNVLT--EIEWLQT-------DVKL  170 (288)
T ss_pred             CCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc----C----Cceee--ehhhhhc-------Ccee
Confidence            3568999999999999999987654   689999998887766643    2    11211  1233222       3579


Q ss_pred             eEEEEeC---CCcccHHHHHHHHhccCC-CeEEEEeCCC
Q 029803           98 DYAFVDA---DKDNYCNYHERLMKLLKV-GGIAVYDNTL  132 (187)
Q Consensus        98 D~i~~d~---~~~~~~~~~~~~~~~L~~-gG~lv~~~~~  132 (187)
                      |+|.+-.   .+-+....++.++..|+| +|.+|+.-++
T Consensus       171 dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVL  209 (288)
T KOG3987|consen  171 DLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVL  209 (288)
T ss_pred             ehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEe
Confidence            9886421   123455678888999998 8887775444

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.70  E-value=0.0049  Score=46.26  Aligned_cols=94  Identities=15%  Similarity=0.222  Sum_probs=62.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC--------CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH------HHH
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPE--------DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL------SVL   84 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~--------~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~------~~~   84 (187)
                      .-++++|+++..|.|+..+.+.+-.        ..+++++|+++=.           ... .+.-+++|+.      .++
T Consensus        41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~-GV~qlq~DIT~~stae~Ii  108 (294)
T KOG1099|consen   41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIE-GVIQLQGDITSASTAEAII  108 (294)
T ss_pred             hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccC-ceEEeecccCCHhHHHHHH
Confidence            3468999999999999998876621        1249999997531           222 2555666652      233


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcc-----c---------HHHHHHHHhccCCCeEEEEe
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDN-----Y---------CNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~-----~---------~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+     .+++.|+|++|+.+..     .         ...+.-....|+|||.++..
T Consensus       109 ~hf-----ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaK  162 (294)
T KOG1099|consen  109 EHF-----GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAK  162 (294)
T ss_pred             HHh-----CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehh
Confidence            433     4579999999975421     1         12344445799999999874

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.69  E-value=0.011  Score=41.38  Aligned_cols=102  Identities=14%  Similarity=0.080  Sum_probs=73.6

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...+..+.+|+|+|.|...+..++..  -..-+++|++|=....++-+.-+.++.....+...|....  .       -.
T Consensus        69 ~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~--d-------l~  137 (199)
T KOG4058|consen   69 RGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV--D-------LR  137 (199)
T ss_pred             cCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc--c-------cc
Confidence            34555789999999999988888763  2467899999988888887777788887788888776553  1       24


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|..+.+-+..+..++.-..+.-.+..|..++.
T Consensus       138 dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva  170 (199)
T KOG4058|consen  138 DYRNVVIFGAESVMPDLEDKLRTELPANTRVVA  170 (199)
T ss_pred             ccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence            566565555555555555556557778877765

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=96.68  E-value=0.0073  Score=41.09  Aligned_cols=91  Identities=20%  Similarity=0.279  Sum_probs=61.5

Q ss_pred             cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcc
Q 029803           29 FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN  108 (187)
Q Consensus        29 g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~  108 (187)
                      |.|..++.+|+...  .+|+++|.++...+.+++.    |...-+.....|..+.+..+.    .+..+|+||-..   .
T Consensus         1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~----Ga~~~~~~~~~~~~~~i~~~~----~~~~~d~vid~~---g   67 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKEL----GADHVIDYSDDDFVEQIRELT----GGRGVDVVIDCV---G   67 (130)
T ss_dssp             HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT----TESEEEETTTSSHHHHHHHHT----TTSSEEEEEESS---S
T ss_pred             ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh----ccccccccccccccccccccc----ccccceEEEEec---C
Confidence            46888999999874  8999999999887777653    422111112223444444442    125799887643   2


Q ss_pred             cHHHHHHHHhccCCCeEEEEeCCC
Q 029803          109 YCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus       109 ~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ....++.++++++++|.+++-...
T Consensus        68 ~~~~~~~~~~~l~~~G~~v~vg~~   91 (130)
T PF00107_consen   68 SGDTLQEAIKLLRPGGRIVVVGVY   91 (130)
T ss_dssp             SHHHHHHHHHHEEEEEEEEEESST
T ss_pred             cHHHHHHHHHHhccCCEEEEEEcc
Confidence            356888999999999999986554

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK11524 putative methyltransferase; Provisional

Probab=96.64  E-value=0.0071  Score=47.32  Aligned_cols=56  Identities=11%  Similarity=0.094  Sum_probs=46.4

Q ss_pred             HHHHHHHHHH--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh
Q 029803            8 GQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK   66 (187)
Q Consensus         8 ~~ll~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~   66 (187)
                      .+|+..++..  .++..|||-.+|+|.+++...+.   +.+.+++|++++.++.|++++..
T Consensus       195 ~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~l---gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASSNPGDIVLDPFAGSFTTGAVAKAS---GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh
Confidence            4677777764  46789999999999988766554   57999999999999999999864

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=96.64  E-value=0.064  Score=41.01  Aligned_cols=116  Identities=12%  Similarity=0.129  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      ....++..+........ +..-+|+-..+..+.+   +.-+.+.+|+.|+-.+..++++..   ..++++++.|..+.+.
T Consensus        45 ~l~~yl~~v~~~n~~~~-l~~YPGSP~ia~~llR---~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~  117 (245)
T PF04378_consen   45 ALQPYLDAVRALNPDGE-LRFYPGSPAIAARLLR---EQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLK  117 (245)
T ss_dssp             GGHHHHHHHHHHSSSSS---EEE-HHHHHHHHS----TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHH
T ss_pred             HHHHHHHHHHHhccCCC-cCcCCCCHHHHHHhCC---ccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhh
Confidence            34556666655554443 5566666655555544   477999999999999988888764   3579999999999877


Q ss_pred             HHhhcccCCCceeEEEEeCCC---cccHHHHHHH---HhccCCCeEEEEeCC
Q 029803           86 QLLKYSENEGSFDYAFVDADK---DNYCNYHERL---MKLLKVGGIAVYDNT  131 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~---~~~~~~~~~~---~~~L~~gG~lv~~~~  131 (187)
                      .+...   .++--+|+||...   .+|....+.+   ++.-..|-+++.--+
T Consensus       118 allPP---~~rRglVLIDPpYE~~~dy~~v~~~l~~a~kR~~~G~~~iWYPi  166 (245)
T PF04378_consen  118 ALLPP---PERRGLVLIDPPYEQKDDYQRVVDALAKALKRWPTGVYAIWYPI  166 (245)
T ss_dssp             HH-S----TTS-EEEEE-----STTHHHHHHHHHHHHHHH-TTSEEEEEEEE
T ss_pred             hhCCC---CCCCeEEEECCCCCCchHHHHHHHHHHHHHHhcCCcEEEEEeec
Confidence            76533   5567899999743   3455444444   444445555555433

; PDB: 2OO3_A.

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=96.57  E-value=0.0054  Score=51.26  Aligned_cols=101  Identities=14%  Similarity=0.086  Sum_probs=73.0

Q ss_pred             CCEEEEEcccccHHHHHHH---hhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           20 AKKTIEIGVFTGYSLLLTA---LTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la---~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ...|.-+|.|.|-..-...   .......+++++|-+|+++-..+. .......++++++.+|..++-+.       .++
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap-------~eq  439 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP-------REQ  439 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-------hhh
Confidence            4568889999996554433   333346789999999998877665 23334467899999999876321       267


Q ss_pred             eeEEEEe-----CCCcccHHHHHHHHhccCCCeEEEE
Q 029803           97 FDYAFVD-----ADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        97 ~D~i~~d-----~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|+++..     ++-+-.++.++-+.+.|||+|+-|-
T Consensus       440 ~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIsIP  476 (649)
T KOG0822|consen  440 ADIIVSELLGSFGDNELSPECLDGAQKFLKPDGISIP  476 (649)
T ss_pred             ccchHHHhhccccCccCCHHHHHHHHhhcCCCceEcc
Confidence            8988643     3455677888899999999988764

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.56  E-value=0.041  Score=44.85  Aligned_cols=108  Identities=18%  Similarity=0.181  Sum_probs=68.6

Q ss_pred             HHHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc-hHHHHHHHhhcc
Q 029803           14 LLRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYS   91 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~   91 (187)
                      +.+..++.+||.+|+|. |..+..+|+... ..++++++.+++..+.+++..   +. ..+.....+ ..+.+..+.   
T Consensus       179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~~---~~-~vi~~~~~~~~~~~l~~~~---  250 (386)
T cd08283         179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSHL---GA-ETINFEEVDDVVEALRELT---  250 (386)
T ss_pred             hccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHcC---Cc-EEEcCCcchHHHHHHHHHc---
Confidence            34455778999999987 888888998864 346999999998888777642   21 112222221 222233321   


Q ss_pred             cCCCceeEEEEeCCC------------------cccHHHHHHHHhccCCCeEEEEeC
Q 029803           92 ENEGSFDYAFVDADK------------------DNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~------------------~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                       ....+|+|+-....                  .+....++.+++.++++|.++.-.
T Consensus       251 -~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g  306 (386)
T cd08283         251 -GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG  306 (386)
T ss_pred             -CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence             23469977653211                  112456788899999999988753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=96.46  E-value=0.16  Score=39.30  Aligned_cols=111  Identities=7%  Similarity=0.045  Sum_probs=67.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC--CCcEEEEEcchHHHH-HHHhhcccCCC
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEALSVL-DQLLKYSENEG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~~~-~~~~~~~~~~~   95 (187)
                      ....|+.+|||.-.-...+  ..+.+.+++-+|. |+.++.-++.+...+.  ..+.+++..|..+.+ ..+...+....
T Consensus        81 g~~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~  157 (260)
T TIGR00027        81 GIRQVVILGAGLDTRAYRL--PWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPT  157 (260)
T ss_pred             CCcEEEEeCCccccHHHhc--CCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCC
Confidence            3567999999665444433  2233466666775 6677777777776543  357888988986433 33322111112


Q ss_pred             ceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           96 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        96 ~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ..-++++.+     ..+.....++.+.+...||+.|+++-+.
T Consensus       158 ~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       158 APTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             CCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            233444443     2345567888888888899999997443

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=96.40  E-value=0.0057  Score=45.58  Aligned_cols=80  Identities=20%  Similarity=0.259  Sum_probs=53.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH-HHHHhhcccCCCceeE
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-LDQLLKYSENEGSFDY   99 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~~~~~~~~~D~   99 (187)
                      .++|||||=+....+....    --.|+.||++++-                -.+.+.|..+. ++.     .+.++||+
T Consensus        53 lrlLEVGals~~N~~s~~~----~fdvt~IDLns~~----------------~~I~qqDFm~rplp~-----~~~e~Fdv  107 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSG----WFDVTRIDLNSQH----------------PGILQQDFMERPLPK-----NESEKFDV  107 (219)
T ss_pred             ceEEeecccCCCCcccccC----ceeeEEeecCCCC----------------CCceeeccccCCCCC-----CcccceeE
Confidence            5899999976665543322    3469999998631                23444555442 221     13579999


Q ss_pred             EEEeC------CCcccHHHHHHHHhccCCCeE
Q 029803          100 AFVDA------DKDNYCNYHERLMKLLKVGGI  125 (187)
Q Consensus       100 i~~d~------~~~~~~~~~~~~~~~L~~gG~  125 (187)
                      |.+..      ++....+.++.+.+.|+|+|.
T Consensus       108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~  139 (219)
T PF11968_consen  108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL  139 (219)
T ss_pred             EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence            97662      345556789999999999999

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.34  E-value=0.07  Score=42.08  Aligned_cols=95  Identities=14%  Similarity=0.157  Sum_probs=68.4

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      ++.+|.-||.| .|..+..+|..+  ++.|+.+|.+.+.+......+     ..+++..-.+...+-...       .+.
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~f-----~~rv~~~~st~~~iee~v-------~~a  232 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDLF-----GGRVHTLYSTPSNIEEAV-------KKA  232 (371)
T ss_pred             CCccEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHhh-----CceeEEEEcCHHHHHHHh-------hhc
Confidence            44567777776 577888888876  589999999988877666555     346777777776665544       578


Q ss_pred             eEEEEe---CCCcccHHHHHHHHhccCCCeEEE
Q 029803           98 DYAFVD---ADKDNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        98 D~i~~d---~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      |+++-.   .......-..+++.+.||||++|+
T Consensus       233 DlvIgaVLIpgakaPkLvt~e~vk~MkpGsViv  265 (371)
T COG0686         233 DLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIV  265 (371)
T ss_pred             cEEEEEEEecCCCCceehhHHHHHhcCCCcEEE
Confidence            988643   334444556788889999999886

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.28  E-value=0.08  Score=44.85  Aligned_cols=107  Identities=19%  Similarity=0.161  Sum_probs=66.3

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEE--EE-------------cch
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF--IE-------------SEA   80 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~--~~-------------~d~   80 (187)
                      ..++.+|+-+|+| .|..++..|+.+.  ++|+++|.+++.++.+++.    |.. .+.+  ..             .+.
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aesl----GA~-~v~i~~~e~~~~~~gya~~~s~~~  234 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVESM----GAE-FLELDFEEEGGSGDGYAKVMSEEF  234 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHc----CCe-EEEeccccccccccchhhhcchhH
Confidence            3478999999998 5677778888774  5899999999988877752    321 1111  00             011


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcc--cHHH-HHHHHhccCCCeEEEEeCCC
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDN--YCNY-HERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~--~~~~-~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .+.......  .....+|++|-....+.  .+.. .+++.+.++|||+++.-.+.
T Consensus       235 ~~~~~~~~~--~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~  287 (509)
T PRK09424        235 IKAEMALFA--EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAE  287 (509)
T ss_pred             HHHHHHHHH--hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccC
Confidence            110011100  01246999887653322  2344 59999999999998875443

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.24  E-value=0.0078  Score=45.30  Aligned_cols=82  Identities=10%  Similarity=0.277  Sum_probs=55.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhc-CCCCcEEEE-EcchHHHHHHHhhcccCCCc
Q 029803           20 AKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFI-ESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .-++||||+|.-  .++=.-.. ..+.+.++.|+++..++.|+.++..+ ++...+++. +.|...+++.+..   .++.
T Consensus        79 ~i~~LDIGvGAn--CIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig---~nE~  153 (292)
T COG3129          79 NIRILDIGVGAN--CIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIG---KNER  153 (292)
T ss_pred             ceEEEeeccCcc--cccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccccccccc---ccce
Confidence            346899998654  33322211 23679999999999999999999876 666667764 4444445554432   2689


Q ss_pred             eeEEEEeCCC
Q 029803           97 FDYAFVDADK  106 (187)
Q Consensus        97 ~D~i~~d~~~  106 (187)
                      ||+..|+...
T Consensus       154 yd~tlCNPPF  163 (292)
T COG3129         154 YDATLCNPPF  163 (292)
T ss_pred             eeeEecCCCc
Confidence            9999998643

>PRK13699 putative methylase; Provisional

Probab=96.20  E-value=0.022  Score=43.16  Aligned_cols=56  Identities=7%  Similarity=0.029  Sum_probs=44.8

Q ss_pred             HHHHHHHH--HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc
Q 029803            9 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA   67 (187)
Q Consensus         9 ~ll~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~   67 (187)
                      +++..++.  ..++..|||.-||+|.++....+.   +.+.+++|++++..+.+.+++...
T Consensus       151 ~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~---~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        151 TSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQS---GRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             HHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHH
Confidence            45666654  347789999999999988766654   568999999999999999888653

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.19  E-value=0.053  Score=43.36  Aligned_cols=99  Identities=17%  Similarity=0.228  Sum_probs=59.7

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++++||-+|+| .|..++.+|+... ..+|+++|.+++.++.+++    .|...-+.....+..    .+...   .+.
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~----~~~~~---~g~  235 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLD----HYKAE---KGY  235 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHH----HHhcc---CCC
Confidence            356789988865 4556666777653 3479999999988877765    243211111111221    22111   245


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +|+||-...   ....++.+.+.|+++|.++.-..
T Consensus       236 ~D~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        236 FDVSFEVSG---HPSSINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             CCEEEECCC---CHHHHHHHHHHhhcCCEEEEEcc
Confidence            898774322   23456778899999999987543

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=96.18  E-value=0.4  Score=36.67  Aligned_cols=134  Identities=10%  Similarity=0.064  Sum_probs=91.3

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      ......++..+-..++... |..-+|+-..+..+.+.   .-++..+|+.|+-....++++..   ..++++..+|....
T Consensus        74 pa~l~~yl~~i~~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~~---d~~vrv~~~DG~~~  146 (279)
T COG2961          74 PAELEPYLDAVRQLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFAG---DRRVRVLRGDGFLA  146 (279)
T ss_pred             hHHHHHHHHHHHHhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhCC---CcceEEEecCcHHH
Confidence            4455667777766666655 77788887777666653   67999999999999999999862   45799999999887


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCc---ccHHHH---HHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHH
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKD---NYCNYH---ERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL  157 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~---~~~~~~---~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (187)
                      +...+..   .++--+|++|...+   +|....   ++.++-...|-+.+.--+.                   ..+.++
T Consensus       147 l~a~LPP---~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yaiWYPik-------------------~r~~~~  204 (279)
T COG2961         147 LKAHLPP---KERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAIWYPIK-------------------DRRQIR  204 (279)
T ss_pred             HhhhCCC---CCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEEEEeec-------------------chHHHH
Confidence            6665432   56778999997543   344433   3334444455555543222                   334578


Q ss_pred             HHHHHhhcC
Q 029803          158 DLNRSLADD  166 (187)
Q Consensus       158 ~~~~~l~~~  166 (187)
                      +|.+.+...
T Consensus       205 ~f~~~L~~~  213 (279)
T COG2961         205 RFLRALEAL  213 (279)
T ss_pred             HHHHHHhhc
Confidence            888887754

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.14  E-value=0.029  Score=42.91  Aligned_cols=101  Identities=18%  Similarity=0.182  Sum_probs=61.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHH-----HhcCCCCcEE---EEEcchHHHHHHHhhc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII-----KKAGVDHKIN---FIESEALSVLDQLLKY   90 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-----~~~~~~~~~~---~~~~d~~~~~~~~~~~   90 (187)
                      ++.+|||+|+|+|..++.+|...  ...|+..|. +...+..+.+.     ....+...+.   +.-+++.+....    
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~--~~~v~ltD~-~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~----  158 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLL--GAEVVLTDL-PKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFR----  158 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHh--cceeccCCc-hhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhc----
Confidence            56789999999998888777754  578888886 33333333332     2222222233   233444333222    


Q ss_pred             ccCCCc-eeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEe
Q 029803           91 SENEGS-FDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        91 ~~~~~~-~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                         .+. +|+|+...   ..+.......-+..+|..++.+.+.
T Consensus       159 ---~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~  198 (248)
T KOG2793|consen  159 ---LPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA  198 (248)
T ss_pred             ---cCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence               233 89998653   3455667777788899999966554

>PRK13699 putative methylase; Provisional

Probab=96.11  E-value=0.013  Score=44.31  Aligned_cols=51  Identities=16%  Similarity=0.273  Sum_probs=39.1

Q ss_pred             EEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc------------------ccHHHHHHHHhccCCCeEEEE
Q 029803           73 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------------------NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        73 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~------------------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+++++|+.+.++.+     .++++|+|+.|+...                  -....++++.++|||||.+++
T Consensus         2 ~~l~~gD~le~l~~l-----pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i   70 (227)
T PRK13699          2 SRFILGNCIDVMARF-----PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS   70 (227)
T ss_pred             CeEEechHHHHHHhC-----CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            468899999988876     368999999995321                  013467888899999998875

>PRK11524 putative methyltransferase; Provisional

Probab=96.07  E-value=0.018  Score=45.08  Aligned_cols=53  Identities=21%  Similarity=0.348  Sum_probs=40.2

Q ss_pred             cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc------c---------c----HHHHHHHHhccCCCeEEEEe
Q 029803           72 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD------N---------Y----CNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        72 ~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~------~---------~----~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+++++|+.+.+..+     ..++||+|++|....      .         +    ...+.++.++|+|||.+++.
T Consensus         8 ~~~i~~gD~~~~l~~l-----~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~   79 (284)
T PRK11524          8 AKTIIHGDALTELKKI-----PSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM   79 (284)
T ss_pred             CCEEEeccHHHHHHhc-----ccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            4679999999987765     257999999996321      0         1    24678888999999999874

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=96.00  E-value=0.018  Score=39.31  Aligned_cols=51  Identities=24%  Similarity=0.322  Sum_probs=38.3

Q ss_pred             cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC-C----cc-cHHHHHHHHhccCCCeEEEE
Q 029803           72 KINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-K----DN-YCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        72 ~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~-~----~~-~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+++..+|+.+.++.+      ...+|+||.|+- +    +. ..++++.+.+++++||++..
T Consensus        32 ~L~L~~gDa~~~l~~l------~~~~Da~ylDgFsP~~nPelWs~e~~~~l~~~~~~~~~l~T   88 (124)
T PF05430_consen   32 TLTLWFGDAREMLPQL------DARFDAWYLDGFSPAKNPELWSEELFKKLARLSKPGGTLAT   88 (124)
T ss_dssp             EEEEEES-HHHHHHHB-------T-EEEEEE-SS-TTTSGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred             EEEEEEcHHHHHHHhC------cccCCEEEecCCCCcCCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            4678999999998886      479999999962 1    11 35789999999999999976

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=95.99  E-value=0.1  Score=41.24  Aligned_cols=99  Identities=21%  Similarity=0.243  Sum_probs=61.8

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ..++.+||..|+| .|..++.+|+..  +.++++++.+++..+.+++    .+....+.....+..+.+ ...    ...
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~--G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~~~~~~~~-~~~----~~~  231 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAM--GAAVIAVDIKEEKLELAKE----LGADEVLNSLDDSPKDKK-AAG----LGG  231 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCCcCHHHHH-HHh----cCC
Confidence            4566788888865 477788888875  5689999998887776643    343221111111222222 111    245


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+|+++-...   ....++.+++.|+++|.++.-
T Consensus       232 ~~D~vid~~g---~~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         232 GFDVIFDFVG---TQPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             CceEEEECCC---CHHHHHHHHHHhhcCCEEEEE
Confidence            7997764321   245678889999999999864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=95.97  E-value=0.031  Score=45.07  Aligned_cols=53  Identities=13%  Similarity=0.174  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHH
Q 029803            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGL   61 (187)
Q Consensus         7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~   61 (187)
                      ..+++..+......+.++|+|+|.|+.+..++-.+  +..|++||-+....+.|+
T Consensus       141 lselvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~  193 (476)
T KOG2651|consen  141 LSELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQ  193 (476)
T ss_pred             HHHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHH
Confidence            35677888888889999999999999999998775  689999999876666554

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=95.88  E-value=0.023  Score=42.37  Aligned_cols=108  Identities=12%  Similarity=0.120  Sum_probs=63.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCcchHHHHHHHHHhcC---C-------------------------
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPED-GQITAIDVNRETYEIGLPIIKKAG---V-------------------------   69 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~---~-------------------------   69 (187)
                      .|-++.|-+||+|+....+....+.. .+|++-|+++++++.|++|+....   +                         
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s  130 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES  130 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence            56689999999999888777654422 589999999999999988874322   0                         


Q ss_pred             -------------CCcEEEEEcchHHHHH--HHhhcccCCCceeEEEEeC-------CCc-----ccHHHHHHHHhccCC
Q 029803           70 -------------DHKINFIESEALSVLD--QLLKYSENEGSFDYAFVDA-------DKD-----NYCNYHERLMKLLKV  122 (187)
Q Consensus        70 -------------~~~~~~~~~d~~~~~~--~~~~~~~~~~~~D~i~~d~-------~~~-----~~~~~~~~~~~~L~~  122 (187)
                                   ..-..+.+.|.++.-.  .. .   .....|+|+.|.       |..     ....+++.+.+.|.+
T Consensus       131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~-~---~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~  206 (246)
T PF11599_consen  131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVL-D---AGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPE  206 (246)
T ss_dssp             HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHH-H---TT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-T
T ss_pred             HHHHHHHHHhcCCCCchhheeecccCCchhhhh-c---cCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCC
Confidence                         0113455555554211  11 1   123468888883       111     134688888999987


Q ss_pred             CeEEEEeC
Q 029803          123 GGIAVYDN  130 (187)
Q Consensus       123 gG~lv~~~  130 (187)
                      ++++++.+
T Consensus       207 ~sVV~v~~  214 (246)
T PF11599_consen  207 RSVVAVSD  214 (246)
T ss_dssp             T-EEEEEE
T ss_pred             CcEEEEec
Confidence            78887743

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.86  E-value=0.26  Score=36.05  Aligned_cols=126  Identities=17%  Similarity=0.217  Sum_probs=65.0

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHH------------HHhcCCCCcEEEEEcchHHHHHHHh
Q 029803           22 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      +|--||.  |+.++.+|..+. .+.+|+++|++++.++..++-            +++.....+..+. .|..+.+    
T Consensus         2 ~I~ViGl--GyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai----   74 (185)
T PF03721_consen    2 KIAVIGL--GYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAI----   74 (185)
T ss_dssp             EEEEE----STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred             EEEEECC--CcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhh----
Confidence            5566665  444444443332 257999999999877655431            1110001122222 2222221    


Q ss_pred             hcccCCCceeEEEEeCC----------CcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHH
Q 029803           89 KYSENEGSFDYAFVDAD----------KDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  158 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~----------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (187)
                            ...|++|+...          ........+.+.+.++++.++++..+...|.               ....++.
T Consensus        75 ------~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt---------------t~~~~~~  133 (185)
T PF03721_consen   75 ------KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT---------------TEELLKP  133 (185)
T ss_dssp             ------HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH---------------HHHHHHH
T ss_pred             ------hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee---------------ehHhhhh
Confidence                  34688887531          1224566778889999999999988887663               2224556


Q ss_pred             HHHHhhcC-CCeEEEeee
Q 029803          159 LNRSLADD-PRVQLSHVA  175 (187)
Q Consensus       159 ~~~~l~~~-~~~~~~~lp  175 (187)
                      +.+..... .+|.....|
T Consensus       134 ile~~~~~~~~f~la~~P  151 (185)
T PF03721_consen  134 ILEKRSGKKEDFHLAYSP  151 (185)
T ss_dssp             HHHHHCCTTTCEEEEE--
T ss_pred             hhhhhcccccCCeEEECC
Confidence            66654432 567777666

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=95.79  E-value=0.12  Score=41.50  Aligned_cols=103  Identities=17%  Similarity=0.162  Sum_probs=61.4

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ..++.+||-.|+| .|..++.+|+... ..+|+++|.+++..+.+++    .+...-+.....+..+.+....    ...
T Consensus       174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~i~~~~----~~~  244 (358)
T TIGR03451       174 VKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWARE----FGATHTVNSSGTDPVEAIRALT----GGF  244 (358)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcCCCcCHHHHHHHHh----CCC
Confidence            4567889988864 3455666777653 2359999998887777753    3432112222223333333321    124


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|+|+ |..-  ....++.+++.++++|.+++-..
T Consensus       245 g~d~vi-d~~g--~~~~~~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       245 GADVVI-DAVG--RPETYKQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCCEEE-ECCC--CHHHHHHHHHHhccCCEEEEECC
Confidence            689776 3321  23456778899999999987543

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.77  E-value=0.029  Score=37.41  Aligned_cols=89  Identities=19%  Similarity=0.082  Sum_probs=58.5

Q ss_pred             ccccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCceeEEEEeC
Q 029803           28 VFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDA  104 (187)
Q Consensus        28 ~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~D~i~~d~  104 (187)
                      ||.|..+..+++.+.+.. +|+.+|.+++..+.+++.        .+.++.||+.+  .+...     .-.+.+.+++..
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a-----~i~~a~~vv~~~   70 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERA-----GIEKADAVVILT   70 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHT-----TGGCESEEEEES
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhc-----CccccCEEEEcc
Confidence            566788888888775455 899999999987766643        26688899865  34443     235789888875


Q ss_pred             CCcccHHHHHHHHhccCCCeEEEEe
Q 029803          105 DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus       105 ~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ......-..-...+.+.|...+++.
T Consensus        71 ~~d~~n~~~~~~~r~~~~~~~ii~~   95 (116)
T PF02254_consen   71 DDDEENLLIALLARELNPDIRIIAR   95 (116)
T ss_dssp             SSHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCeEEEE
Confidence            4433333334445677777777763

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.66  E-value=0.15  Score=40.76  Aligned_cols=93  Identities=13%  Similarity=0.114  Sum_probs=57.3

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhh-CCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALT-IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~-~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      .++.+||-+|+| .|..+..+++. .. ..+|+++|.+++.++.+++    .+.   ....  +  +. ..       ..
T Consensus       162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g-~~~vi~~~~~~~k~~~a~~----~~~---~~~~--~--~~-~~-------~~  221 (341)
T cd08237         162 KDRNVIGVWGDGNLGYITALLLKQIYP-ESKLVVFGKHQEKLDLFSF----ADE---TYLI--D--DI-PE-------DL  221 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhcC-CCcEEEEeCcHhHHHHHhh----cCc---eeeh--h--hh-hh-------cc
Confidence            467899999975 23344555654 33 4689999999888877764    221   1111  1  11 11       13


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .+|+||=..........++.++++|+++|.+++-.
T Consensus       222 g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         222 AVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             CCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEe
Confidence            58977733222224557888899999999998744

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=95.65  E-value=0.1  Score=44.11  Aligned_cols=102  Identities=20%  Similarity=0.230  Sum_probs=59.9

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEE---------------EEcchH
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF---------------IESEAL   81 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~---------------~~~d~~   81 (187)
                      .++.+++-+|+| .|..+..+++.+  +.+|+.+|.+++.++.++.    .+.. .+++               ...+..
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~----lGa~-~v~v~~~e~g~~~~gYa~~~s~~~~  234 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS----MGAE-FLELDFKEEGGSGDGYAKVMSEEFI  234 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCe-EEeccccccccccccceeecCHHHH
Confidence            367899999997 456677777776  4679999999987766664    2321 1111               111111


Q ss_pred             HHHHHHhhcccCCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEE
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +.......+  .-..+|+||...   ..+...-..+.+.+.+|||++++=
T Consensus       235 ~~~~~~~~e--~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD  282 (511)
T TIGR00561       235 AAEMELFAA--QAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD  282 (511)
T ss_pred             HHHHHHHHH--HhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence            100111100  135799997654   222323356777899999998773

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=95.65  E-value=0.093  Score=44.96  Aligned_cols=100  Identities=16%  Similarity=0.189  Sum_probs=64.4

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch----HH-HHHHHhhcc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA----LS-VLDQLLKYS   91 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~----~~-~~~~~~~~~   91 (187)
                      +.+...|||+||..|.|....++.+|.++-|+++|+-|-.           ..+ ++..++.|+    +. .+.....  
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik-----------p~~-~c~t~v~dIttd~cr~~l~k~l~--  107 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK-----------PIP-NCDTLVEDITTDECRSKLRKILK--  107 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc-----------cCC-ccchhhhhhhHHHHHHHHHHHHH--
Confidence            4577889999999999999999999988999999987631           111 222222232    22 2233322  


Q ss_pred             cCCCceeEEEEeCCCcc--------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           92 ENEGSFDYAFVDADKDN--------------YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~--------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                        ..+.|+|+.|+.+.-              ....++.+...|..||.++ ..++.
T Consensus       108 --t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fv-tkvfr  160 (780)
T KOG1098|consen  108 --TWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFV-TKVFR  160 (780)
T ss_pred             --hCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccc-ccccc
Confidence              256799999975421              1234555567889999944 44553

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=95.56  E-value=0.17  Score=40.88  Aligned_cols=100  Identities=24%  Similarity=0.355  Sum_probs=59.9

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ..++.+||-.|+| .|..+..+|+..  +. +|+++|.+++..+.+++    .+...-+.....+..+.+..+.     .
T Consensus       189 i~~g~~VlV~G~G~vG~~a~~lak~~--G~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~i~~~~-----~  257 (371)
T cd08281         189 VRPGQSVAVVGLGGVGLSALLGAVAA--GASQVVAVDLNEDKLALARE----LGATATVNAGDPNAVEQVRELT-----G  257 (371)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCCcEEEEcCCHHHHHHHHH----cCCceEeCCCchhHHHHHHHHh-----C
Confidence            4567788888864 345566677764  44 69999999988777754    3432111111122222222221     2


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +.+|+||-..   .....++.+++.++++|.++.-.
T Consensus       258 ~g~d~vid~~---G~~~~~~~~~~~l~~~G~iv~~G  290 (371)
T cd08281         258 GGVDYAFEMA---GSVPALETAYEITRRGGTTVTAG  290 (371)
T ss_pred             CCCCEEEECC---CChHHHHHHHHHHhcCCEEEEEc
Confidence            3689877432   12346777889999999988744

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR00518 alaDH alanine dehydrogenase

Probab=95.54  E-value=0.15  Score=41.46  Aligned_cols=96  Identities=17%  Similarity=0.072  Sum_probs=56.3

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      ++.+|+-+|+| .|..++..+..+  +.+|+.+|.+++..+.+...+   +.  .+.....+. +.+...      -..+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~---g~--~v~~~~~~~-~~l~~~------l~~a  231 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEF---GG--RIHTRYSNA-YEIEDA------VKRA  231 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhc---Cc--eeEeccCCH-HHHHHH------HccC
Confidence            56789999987 566666666665  458999999887665544433   21  122222222 222332      1578


Q ss_pred             eEEEEeCC---CcccHHHHHHHHhccCCCeEEEE
Q 029803           98 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        98 D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+|+....   .....-.-+...+.++++++++-
T Consensus       232 DvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvD  265 (370)
T TIGR00518       232 DLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD  265 (370)
T ss_pred             CEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence            99987531   11121123566677899987764

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=95.53  E-value=0.023  Score=43.68  Aligned_cols=47  Identities=11%  Similarity=0.017  Sum_probs=37.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-------CCEEEEEeCCcchHHHHHHHHHh
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPE-------DGQITAIDVNRETYEIGLPIIKK   66 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~-------~~~v~~iD~~~~~~~~a~~~~~~   66 (187)
                      +-+|+|+|+|.|..+..++..+..       ..+++.+|.||...+.-++.+..
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            468999999999999998887752       35899999999999888888765

; PDB: 4F3N_A 1ZKD_B.

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=95.45  E-value=0.31  Score=39.15  Aligned_cols=101  Identities=12%  Similarity=0.072  Sum_probs=63.4

Q ss_pred             HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhccc
Q 029803           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSE   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~   92 (187)
                      ...++.+||-.|+  +.|..++.+|+..  +.++++++.+++..+.+++.   .+...-+..... +..+.+....    
T Consensus       155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~~~~k~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~----  225 (348)
T PLN03154        155 SPKKGDSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAGSSQKVDLLKNK---LGFDEAFNYKEEPDLDAALKRYF----  225 (348)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHh---cCCCEEEECCCcccHHHHHHHHC----
Confidence            3556789999986  4777888888875  56899998888766655532   343221211111 3333333321    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                       .+.+|++| |..-   ...+..+++.|+++|.++.-.
T Consensus       226 -~~gvD~v~-d~vG---~~~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        226 -PEGIDIYF-DNVG---GDMLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             -CCCcEEEE-ECCC---HHHHHHHHHHhccCCEEEEEC
Confidence             24689887 3322   246778889999999998643

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.41  E-value=0.28  Score=37.16  Aligned_cols=98  Identities=20%  Similarity=0.262  Sum_probs=60.9

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++.+||..|+|. |..+..+++..  +.++++++.+++..+.+++.    +....+.....+....+. .    ...+.
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~-~----~~~~~  201 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAA--GARVIVTDRSDEKLELAKEL----GADHVIDYKEEDLEEELR-L----TGGGG  201 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHHh----CCceeccCCcCCHHHHHH-H----hcCCC
Confidence            6778999999885 76777777765  47899999988766665432    322111111122222211 1    12467


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|+++.....   ...++.+++.|+++|.++.-
T Consensus       202 ~d~vi~~~~~---~~~~~~~~~~l~~~G~~v~~  231 (271)
T cd05188         202 ADVVIDAVGG---PETLAQALRLLRPGGRIVVV  231 (271)
T ss_pred             CCEEEECCCC---HHHHHHHHHhcccCCEEEEE
Confidence            9998854322   14567778899999998864

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=95.39  E-value=0.048  Score=42.96  Aligned_cols=116  Identities=17%  Similarity=0.173  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHcCC-------CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHH---------------
Q 029803            8 GQLMAMLLRLVNA-------KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK---------------   65 (187)
Q Consensus         8 ~~ll~~l~~~~~~-------~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~---------------   65 (187)
                      ..++..|-.+.++       -+||--|||.|..+..++....   .+-+=|.+--|+-...=.+.               
T Consensus       132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh  208 (369)
T KOG2798|consen  132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIH  208 (369)
T ss_pred             hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeee
Confidence            4566666665554       4799999999999999987533   11111322222211111110               


Q ss_pred             ------------------------hcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE----EeCCCcccHHHHHHHH
Q 029803           66 ------------------------KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF----VDADKDNYCNYHERLM  117 (187)
Q Consensus        66 ------------------------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~----~d~~~~~~~~~~~~~~  117 (187)
                                              .++......+..||..+..+.-    ...+.||+|+    +| ...+..++++.+.
T Consensus       209 ~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s----~~~~~~d~VvTcfFID-Ta~NileYi~tI~  283 (369)
T KOG2798|consen  209 QYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTS----SGAGSYDVVVTCFFID-TAHNILEYIDTIY  283 (369)
T ss_pred             ccccccccccccccccCccccccccCCCCCCccccccceeEEecCc----CCCCccceEEEEEEee-chHHHHHHHHHHH
Confidence                                    1111122333445554433321    1124799884    44 3567889999999


Q ss_pred             hccCCCeEEEEeCC
Q 029803          118 KLLKVGGIAVYDNT  131 (187)
Q Consensus       118 ~~L~~gG~lv~~~~  131 (187)
                      ..|+|||+.|=-..
T Consensus       284 ~iLk~GGvWiNlGP  297 (369)
T KOG2798|consen  284 KILKPGGVWINLGP  297 (369)
T ss_pred             HhccCCcEEEeccc
Confidence            99999999875433

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=95.29  E-value=0.035  Score=43.30  Aligned_cols=69  Identities=12%  Similarity=-0.016  Sum_probs=49.4

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803           22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  101 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  101 (187)
                      +++|+.||.|..+.-+....  -..+.++|+++.+++..++|+...       ++++|..+....-.     ...+|+++
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~-----~~~~D~l~   67 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDF-----IPDIDLLT   67 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhc-----CCCCCEEE
Confidence            68999999999988777642  245788999999999888886321       55667665432200     25799998


Q ss_pred             EeC
Q 029803          102 VDA  104 (187)
Q Consensus       102 ~d~  104 (187)
                      .+.
T Consensus        68 ~gp   70 (275)
T cd00315          68 GGF   70 (275)
T ss_pred             eCC
Confidence            774

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=95.29  E-value=0.043  Score=38.70  Aligned_cols=43  Identities=16%  Similarity=0.179  Sum_probs=28.5

Q ss_pred             EEccccc--HHHHHHH-hhCCCCCEEEEEeCCcchHHHHHHH--HHhc
Q 029803           25 EIGVFTG--YSLLLTA-LTIPEDGQITAIDVNRETYEIGLPI--IKKA   67 (187)
Q Consensus        25 eiG~g~G--~~~~~la-~~~~~~~~v~~iD~~~~~~~~a~~~--~~~~   67 (187)
                      |||+..|  .++..++ +...++.+++++|++|..++..+++  +...
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~   48 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALN   48 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHT
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhc
Confidence            7999999  6666554 2344478999999999999999998  5544

; PDB: 2PY6_A.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=95.15  E-value=0.48  Score=37.96  Aligned_cols=106  Identities=22%  Similarity=0.233  Sum_probs=60.6

Q ss_pred             HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ..++.+|+-+|+|. |..++.+|+..  +.+++++|.+++.++.+++    .+....+.....+..+........ ....
T Consensus       164 ~~~g~~VlV~G~G~vG~~a~~~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~~~~~-t~~~  236 (349)
T TIGR03201       164 LKKGDLVIVIGAGGVGGYMVQTAKAM--GAAVVAIDIDPEKLEMMKG----FGADLTLNPKDKSAREVKKLIKAF-AKAR  236 (349)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHHH----hCCceEecCccccHHHHHHHHHhh-cccC
Confidence            45678999999854 66677777775  4589999999988777754    243211211111111222221110 0123


Q ss_pred             ceeE---EEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           96 SFDY---AFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        96 ~~D~---i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|.   +++|..  .....++.+++.|++||.+++-..
T Consensus       237 g~d~~~d~v~d~~--g~~~~~~~~~~~l~~~G~iv~~G~  273 (349)
T TIGR03201       237 GLRSTGWKIFECS--GSKPGQESALSLLSHGGTLVVVGY  273 (349)
T ss_pred             CCCCCcCEEEECC--CChHHHHHHHHHHhcCCeEEEECc
Confidence            4551   344432  223466778899999999987544

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=95.12  E-value=0.016  Score=47.23  Aligned_cols=66  Identities=21%  Similarity=0.129  Sum_probs=57.6

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCc-EEEEEcchHHHHH
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD   85 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~   85 (187)
                      ..++..|.|+.||.|-.++.++..   +++|++-|++|++++..+.++..+.+.+. ++++..|+.+++.
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr  313 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR  313 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence            346778999999999999888874   68999999999999999999988877755 9999999988774

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=95.01  E-value=0.38  Score=38.40  Aligned_cols=103  Identities=20%  Similarity=0.204  Sum_probs=59.6

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ..++.+||-.|+| .|..+..+|+... ...+++++.+++..+.+++    .+...-+.....+ .+.+..+.    ...
T Consensus       158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~-~~~~~~~~----~~~  227 (347)
T PRK10309        158 GCEGKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDINSEKLALAKS----LGAMQTFNSREMS-APQIQSVL----REL  227 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCceEecCcccC-HHHHHHHh----cCC
Confidence            3467788888864 3455566777653 2347889988887776643    3432111111112 22222221    124


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|.+++|..-  ....+..+.+.|++||.+++-..
T Consensus       228 ~~d~~v~d~~G--~~~~~~~~~~~l~~~G~iv~~G~  261 (347)
T PRK10309        228 RFDQLILETAG--VPQTVELAIEIAGPRAQLALVGT  261 (347)
T ss_pred             CCCeEEEECCC--CHHHHHHHHHHhhcCCEEEEEcc
Confidence            68856666422  23467888899999999987543

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.95  E-value=0.6  Score=37.07  Aligned_cols=101  Identities=16%  Similarity=0.205  Sum_probs=58.7

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ...++.+||-+|+| .|..++.+++..  +.+ +++++.+++..+.+++    .+...-+.....+ .+.+..+.    .
T Consensus       160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~--G~~~vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~-~~~~~~~~----~  228 (339)
T cd08239         160 GVSGRDTVLVVGAGPVGLGALMLARAL--GAEDVIGVDPSPERLELAKA----LGADFVINSGQDD-VQEIRELT----S  228 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEEcCCcch-HHHHHHHh----C
Confidence            34567889888864 344556677765  455 9999988887776643    2432111111112 22222221    1


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ...+|++|-...   ....+..+++.|+++|.+++-.
T Consensus       229 ~~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g  262 (339)
T cd08239         229 GAGADVAIECSG---NTAARRLALEAVRPWGRLVLVG  262 (339)
T ss_pred             CCCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEEc
Confidence            347998874322   2335567788999999998643

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.95  E-value=0.45  Score=38.86  Aligned_cols=106  Identities=17%  Similarity=0.190  Sum_probs=61.1

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc-----cC-
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS-----EN-   93 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~-   93 (187)
                      .+|--||-  ||.++.+|..+.. +.+|+++|+++..++...+     |   ...+..-+..+.+......+     .. 
T Consensus        10 ~~I~ViGL--GYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----G---~~~i~e~~~~~~v~~~v~~g~lraTtd~   79 (436)
T COG0677          10 ATIGVIGL--GYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----G---ESYIEEPDLDEVVKEAVESGKLRATTDP   79 (436)
T ss_pred             eEEEEEcc--ccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----C---cceeecCcHHHHHHHHHhcCCceEecCh
Confidence            45666665  6666665554432 5799999999887764432     1   23333333333233322111     00 


Q ss_pred             --CCceeEEEEeC------CC----cccHHHHHHHHhccCCCeEEEEeCCCCCcc
Q 029803           94 --EGSFDYAFVDA------DK----DNYCNYHERLMKLLKVGGIAVYDNTLWGGT  136 (187)
Q Consensus        94 --~~~~D~i~~d~------~~----~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~  136 (187)
                        -...|++++..      ..    +......+.+.+.|++|-++++..+.++|.
T Consensus        80 ~~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGT  134 (436)
T COG0677          80 EELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGT  134 (436)
T ss_pred             hhcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCc
Confidence              12567766542      11    122345666779999999999999998773

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=94.88  E-value=0.61  Score=36.68  Aligned_cols=100  Identities=11%  Similarity=0.046  Sum_probs=62.7

Q ss_pred             HHHcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           15 LRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .+..++.+||-.|  .+.|..++.+|+..  +.++++++.+++..+.+++    .+...-+.....+..+.+...     
T Consensus       139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s~~~~~~l~~----~Ga~~vi~~~~~~~~~~v~~~-----  207 (329)
T cd08294         139 CKPKAGETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGSDDKVAWLKE----LGFDAVFNYKTVSLEEALKEA-----  207 (329)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeCCCccHHHHHHHH-----
Confidence            3455778888887  45777888888875  5689999888877666654    343221221122333333332     


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ....+|+|+ |...   ...++.+++.|+++|.++.-
T Consensus       208 ~~~gvd~vl-d~~g---~~~~~~~~~~l~~~G~iv~~  240 (329)
T cd08294         208 APDGIDCYF-DNVG---GEFSSTVLSHMNDFGRVAVC  240 (329)
T ss_pred             CCCCcEEEE-ECCC---HHHHHHHHHhhccCCEEEEE
Confidence            125699777 4322   24567888999999998863

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=94.86  E-value=0.12  Score=41.57  Aligned_cols=49  Identities=20%  Similarity=0.055  Sum_probs=39.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-------CCCEEEEEeCCcchHHHHHHHHHhcC
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIP-------EDGQITAIDVNRETYEIGLPIIKKAG   68 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~-------~~~~v~~iD~~~~~~~~a~~~~~~~~   68 (187)
                      +-.++|||+|.|.....+++.+.       ...++..||+|++....-+++++...
T Consensus        78 ~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~  133 (370)
T COG1565          78 PLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE  133 (370)
T ss_pred             CceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence            45799999999999888877652       25799999999999888888876543

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=94.82  E-value=0.48  Score=37.89  Aligned_cols=106  Identities=19%  Similarity=0.173  Sum_probs=65.9

Q ss_pred             HHHHHHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803           12 AMLLRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   89 (187)
Q Consensus        12 ~~l~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   89 (187)
                      ....+..++++||-.|.  |-|..++.+|+.+.  ..++.+--+++..+.+    ...+...-+.....|..+.+.++. 
T Consensus       135 ~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--~~~v~~~~s~~k~~~~----~~lGAd~vi~y~~~~~~~~v~~~t-  207 (326)
T COG0604         135 FDRAGLKPGETVLVHGAAGGVGSAAIQLAKALG--ATVVAVVSSSEKLELL----KELGADHVINYREEDFVEQVRELT-  207 (326)
T ss_pred             HHhcCCCCCCEEEEecCCchHHHHHHHHHHHcC--CcEEEEecCHHHHHHH----HhcCCCEEEcCCcccHHHHHHHHc-
Confidence            33344667899999994  45678888999864  3666666555444433    334544334445555555555442 


Q ss_pred             cccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           90 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                         .+..+|+|+-.    .-...+......|+++|.++.-..
T Consensus       208 ---~g~gvDvv~D~----vG~~~~~~~l~~l~~~G~lv~ig~  242 (326)
T COG0604         208 ---GGKGVDVVLDT----VGGDTFAASLAALAPGGRLVSIGA  242 (326)
T ss_pred             ---CCCCceEEEEC----CCHHHHHHHHHHhccCCEEEEEec
Confidence               23479988753    233456667889999999887433

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.80  E-value=0.89  Score=35.22  Aligned_cols=101  Identities=18%  Similarity=0.205  Sum_probs=59.0

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++++||-+|+| .|..++.+|+... ..+|+.+|.+++..+.+++    .+...-+.  ..+..+.+..+.    ....
T Consensus       119 ~~g~~VlV~G~G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~--~~~~~~~~~~~~----~~~g  187 (280)
T TIGR03366       119 LKGRRVLVVGAGMLGLTAAAAAAAAG-AARVVAADPSPDRRELALS----FGATALAE--PEVLAERQGGLQ----NGRG  187 (280)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCcEecC--chhhHHHHHHHh----CCCC
Confidence            366789988864 4556666777653 2348889988887776655    34321111  111112222221    1246


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|+++-...   ....++.+.+.++++|.++.-...
T Consensus       188 ~d~vid~~G---~~~~~~~~~~~l~~~G~iv~~G~~  220 (280)
T TIGR03366       188 VDVALEFSG---ATAAVRACLESLDVGGTAVLAGSV  220 (280)
T ss_pred             CCEEEECCC---ChHHHHHHHHHhcCCCEEEEeccC
Confidence            898774321   234677788999999999875443

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=94.71  E-value=0.7  Score=36.93  Aligned_cols=104  Identities=16%  Similarity=0.216  Sum_probs=62.0

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ...++.+||-.|+| .|..++.+|+... ...+++++.+++..+.+++    .+....+.....+..+.+..+.    ..
T Consensus       163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~  233 (351)
T cd08285         163 NIKLGDTVAVFGIGPVGLMAVAGARLRG-AGRIIAVGSRPNRVELAKE----YGATDIVDYKNGDVVEQILKLT----GG  233 (351)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCceEecCCCCCHHHHHHHHh----CC
Confidence            35567888888765 4566677777654 3368999988877666653    3432212221223223232221    13


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..+|+++-....   ...+..+++.|+++|.++.-..
T Consensus       234 ~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~g~  267 (351)
T cd08285         234 KGVDAVIIAGGG---QDTFEQALKVLKPGGTISNVNY  267 (351)
T ss_pred             CCCcEEEECCCC---HHHHHHHHHHhhcCCEEEEecc
Confidence            569987753221   3467888899999999886443

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=94.66  E-value=0.034  Score=44.82  Aligned_cols=89  Identities=21%  Similarity=0.225  Sum_probs=68.5

Q ss_pred             HHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   89 (187)
Q Consensus        10 ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   89 (187)
                      +..+++.-.++.+|+|++|..|..|..+|......++++++|.+++..+..++.+...|.. .++...+|+... .... 
T Consensus       204 lpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t-~~~~-  280 (413)
T KOG2360|consen  204 LPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNT-ATPE-  280 (413)
T ss_pred             chhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCC-CCcc-
Confidence            3455566667889999999999999999998876899999999999999999999988876 466678887664 2211 


Q ss_pred             cccCCCceeEEEEeC
Q 029803           90 YSENEGSFDYAFVDA  104 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~  104 (187)
                         .-+..-.|++|+
T Consensus       281 ---~~~~v~~iL~Dp  292 (413)
T KOG2360|consen  281 ---KFRDVTYILVDP  292 (413)
T ss_pred             ---cccceeEEEeCC
Confidence               113455677764

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.60  E-value=0.69  Score=36.54  Aligned_cols=109  Identities=11%  Similarity=0.149  Sum_probs=70.5

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC--CCcEEEEEcchH-H-HHHHHhhcccCCC
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEAL-S-VLDQLLKYSENEG   95 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~-~-~~~~~~~~~~~~~   95 (187)
                      -..|+.+|||--  +...--..+++.+++-+|+ |+.++.=++.++..+.  +.+.+++..|.. + +...+.+.+....
T Consensus        93 ~~qvViLgaGLD--TRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~  169 (297)
T COG3315          93 IRQVVILGAGLD--TRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS  169 (297)
T ss_pred             ccEEEEeccccc--cceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence            578999999544  3333222233577888886 8888888888877553  246889999987 3 4444543221223


Q ss_pred             ceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           96 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        96 ~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .--++++.+     ..+....+++.+..++.||..++++..
T Consensus       170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~  210 (297)
T COG3315         170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYS  210 (297)
T ss_pred             CCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence            333444443     345566789999999999988888643

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=94.55  E-value=0.39  Score=37.39  Aligned_cols=101  Identities=16%  Similarity=0.181  Sum_probs=69.0

Q ss_pred             CCCEEEEEcccccHHHHHH-HhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           19 NAKKTIEIGVFTGYSLLLT-ALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~l-a~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.|+-+|-. --+++.+ +..+|  .+|..+|+++..++...+-.+..|+. +++.+.-|....+++-.     .++|
T Consensus       152 ~gK~I~vvGDD-DLtsia~aLt~mp--k~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~-----~~kF  222 (354)
T COG1568         152 EGKEIFVVGDD-DLTSIALALTGMP--KRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDL-----KRKF  222 (354)
T ss_pred             CCCeEEEEcCc-hhhHHHHHhcCCC--ceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHH-----HhhC
Confidence            56779998833 3333333 33333  58999999999999999999998875 48888888887666532     4799


Q ss_pred             eEEEEeCCC--cccHHHHHHHHhccCCC---eEEEE
Q 029803           98 DYAFVDADK--DNYCNYHERLMKLLKVG---GIAVY  128 (187)
Q Consensus        98 D~i~~d~~~--~~~~~~~~~~~~~L~~g---G~lv~  128 (187)
                      |+++-|+..  .....|+.+=...||.-   |++-+
T Consensus       223 DvfiTDPpeTi~alk~FlgRGI~tLkg~~~aGyfgi  258 (354)
T COG1568         223 DVFITDPPETIKALKLFLGRGIATLKGEGCAGYFGI  258 (354)
T ss_pred             CeeecCchhhHHHHHHHHhccHHHhcCCCccceEee
Confidence            988887532  22344555555677765   56544

>PLN02740 Alcohol dehydrogenase-like

Probab=94.51  E-value=0.75  Score=37.41  Aligned_cols=103  Identities=19%  Similarity=0.255  Sum_probs=60.2

Q ss_pred             HHHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhcc
Q 029803           15 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYS   91 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~   91 (187)
                      ....++.+||-+|+| .|..++.+|+... ..+|+++|.+++.++.+++    .+....+....  .+..+.+..+.   
T Consensus       194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~---  265 (381)
T PLN02740        194 ANVQAGSSVAIFGLGAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGITDFINPKDSDKPVHERIREMT---  265 (381)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCCcEEEecccccchHHHHHHHHh---
Confidence            345677899999865 3445566676653 2369999999888887754    34322121111  11223333321   


Q ss_pred             cCCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeC
Q 029803           92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  130 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~  130 (187)
                        .+.+|+|+-...   ....++.++..++++ |.+++-.
T Consensus       266 --~~g~dvvid~~G---~~~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        266 --GGGVDYSFECAG---NVEVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             --CCCCCEEEECCC---ChHHHHHHHHhhhcCCCEEEEEc
Confidence              226997764322   235667777888886 8877643

>cd08293 PTGR2 Prostaglandin reductase

Probab=94.51  E-value=0.74  Score=36.58  Aligned_cols=94  Identities=14%  Similarity=0.148  Sum_probs=58.9

Q ss_pred             CEEEEEcc--cccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           21 KKTIEIGV--FTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        21 ~~vLeiG~--g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .+||-.|+  +.|..++.+|+..  +. +|++++.+++..+.+++.   .|....+.....+..+.+..+.     ...+
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~s~~~~~~~~~~---lGa~~vi~~~~~~~~~~i~~~~-----~~gv  225 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICGSDEKCQLLKSE---LGFDAAINYKTDNVAERLRELC-----PEGV  225 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHh---cCCcEEEECCCCCHHHHHHHHC-----CCCc
Confidence            78988885  5777888888875  45 799998888766665543   3433212211223333333331     2569


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+|+ |....   ..++.+++.|+++|.++.
T Consensus       226 d~vi-d~~g~---~~~~~~~~~l~~~G~iv~  252 (345)
T cd08293         226 DVYF-DNVGG---EISDTVISQMNENSHIIL  252 (345)
T ss_pred             eEEE-ECCCc---HHHHHHHHHhccCCEEEE
Confidence            9887 43221   235778899999999886

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=94.46  E-value=1.1  Score=35.34  Aligned_cols=100  Identities=12%  Similarity=0.075  Sum_probs=61.5

Q ss_pred             HHHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcc
Q 029803           15 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYS   91 (187)
Q Consensus        15 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~   91 (187)
                      ....++.+||-.|.  +.|..++.+|+..  +.++++++.+++..+.+++    .+...-+..... +..+.....    
T Consensus       134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~s~~~~~~~~~----lGa~~vi~~~~~~~~~~~~~~~----  203 (325)
T TIGR02825       134 CGVKGGETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKVAYLKK----LGFDVAFNYKTVKSLEETLKKA----  203 (325)
T ss_pred             hCCCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEeccccccHHHHHHHh----
Confidence            44567789998883  5777888888875  5689988888876666643    343211111111 222222222    


Q ss_pred             cCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       ..+.+|+++ |..-   ...++.+++.|+++|.++.-
T Consensus       204 -~~~gvdvv~-d~~G---~~~~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       204 -SPDGYDCYF-DNVG---GEFSNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             -CCCCeEEEE-ECCC---HHHHHHHHHHhCcCcEEEEe
Confidence             124699887 4322   13457888999999999864

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=94.43  E-value=0.99  Score=35.89  Aligned_cols=101  Identities=12%  Similarity=0.078  Sum_probs=63.0

Q ss_pred             HHHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcc
Q 029803           15 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYS   91 (187)
Q Consensus        15 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~   91 (187)
                      .+..++.+||-.|+  +.|..++.+|+..  +.++++++.+++..+.+++.   .+...-+..... +..+.+....   
T Consensus       147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~~~~~~~~~~~---lGa~~vi~~~~~~~~~~~i~~~~---  218 (338)
T cd08295         147 CKPKKGETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGSDEKVDLLKNK---LGFDDAFNYKEEPDLDAALKRYF---  218 (338)
T ss_pred             cCCCCCCEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHh---cCCceeEEcCCcccHHHHHHHhC---
Confidence            34567789999885  5677888888875  56888888888776666543   243221211111 3323333321   


Q ss_pred             cCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                        ...+|+|+ |..-   ...+..+++.|+++|.++.-
T Consensus       219 --~~gvd~v~-d~~g---~~~~~~~~~~l~~~G~iv~~  250 (338)
T cd08295         219 --PNGIDIYF-DNVG---GKMLDAVLLNMNLHGRIAAC  250 (338)
T ss_pred             --CCCcEEEE-ECCC---HHHHHHHHHHhccCcEEEEe
Confidence              25799887 4322   24577888999999998863

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=94.16  E-value=1.2  Score=33.05  Aligned_cols=83  Identities=16%  Similarity=0.179  Sum_probs=45.8

Q ss_pred             HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEE
Q 029803           17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI   76 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~   76 (187)
                      ..+..+|+-+|||. |...+..+.... -++++.+|.+.                   ...+.+.+++...+-.-+++.+
T Consensus        18 kl~~~~VlviG~GglGs~ia~~La~~G-v~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~   96 (202)
T TIGR02356        18 RLLNSHVLIIGAGGLGSPAALYLAGAG-VGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL   96 (202)
T ss_pred             HhcCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            44678899999973 443333333322 46899999762                   2344555566554433334444


Q ss_pred             EcchHH-HHHHHhhcccCCCceeEEEEeCCC
Q 029803           77 ESEALS-VLDQLLKYSENEGSFDYAFVDADK  106 (187)
Q Consensus        77 ~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~  106 (187)
                      ...... .+..+      -..+|+|+...+.
T Consensus        97 ~~~i~~~~~~~~------~~~~D~Vi~~~d~  121 (202)
T TIGR02356        97 KERVTAENLELL------INNVDLVLDCTDN  121 (202)
T ss_pred             hhcCCHHHHHHH------HhCCCEEEECCCC
Confidence            444322 22333      2679988765443

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PLN02827 Alcohol dehydrogenase-like

Probab=94.16  E-value=0.85  Score=37.11  Aligned_cols=102  Identities=22%  Similarity=0.239  Sum_probs=58.9

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhccc
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~   92 (187)
                      +..++.+||-.|+| .|..++.+|+... ...++++|.+++..+.+++    .+...-+....  .+..+.+..+.    
T Consensus       190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~~----lGa~~~i~~~~~~~~~~~~v~~~~----  260 (378)
T PLN02827        190 DVSKGSSVVIFGLGTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAKT----FGVTDFINPNDLSEPIQQVIKRMT----  260 (378)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCcEEEcccccchHHHHHHHHHh----
Confidence            35567899988864 3445566676653 2368889988887776643    34321111111  12222233321    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  130 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~  130 (187)
                       .+.+|+|+-..   .....+..+++.+++| |.+++-.
T Consensus       261 -~~g~d~vid~~---G~~~~~~~~l~~l~~g~G~iv~~G  295 (378)
T PLN02827        261 -GGGADYSFECV---GDTGIATTALQSCSDGWGLTVTLG  295 (378)
T ss_pred             -CCCCCEEEECC---CChHHHHHHHHhhccCCCEEEEEC
Confidence             23689777432   2233567778899998 9998643

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.10  E-value=0.88  Score=37.65  Aligned_cols=88  Identities=10%  Similarity=0.025  Sum_probs=57.1

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++++|+-+|+|. |......++..  +.+|+.+|.++...+.|++    .|.    +..  +..+   .+       ..
T Consensus       200 l~GktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~----~G~----~~~--~~~e---~v-------~~  257 (413)
T cd00401         200 IAGKVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAM----EGY----EVM--TMEE---AV-------KE  257 (413)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHh----cCC----EEc--cHHH---HH-------cC
Confidence            4688999999984 55555566654  5689999999987776654    232    111  1112   11       45


Q ss_pred             eeEEEEeCCCcccHHHHHHH-HhccCCCeEEEEeC
Q 029803           97 FDYAFVDADKDNYCNYHERL-MKLLKVGGIAVYDN  130 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~-~~~L~~gG~lv~~~  130 (187)
                      .|+|+...   .....+... .+.+++||+++.-.
T Consensus       258 aDVVI~at---G~~~~i~~~~l~~mk~GgilvnvG  289 (413)
T cd00401         258 GDIFVTTT---GNKDIITGEHFEQMKDGAIVCNIG  289 (413)
T ss_pred             CCEEEECC---CCHHHHHHHHHhcCCCCcEEEEeC
Confidence            79887643   233455554 79999999997643

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.03  E-value=1.3  Score=36.21  Aligned_cols=101  Identities=18%  Similarity=0.251  Sum_probs=56.0

Q ss_pred             EEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHH------------HHhcCCCCcEEEEEcchHHHHHHHh
Q 029803           22 KTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      +|--+|+  ||.++..+..+.+ +..|+++|++++.++..++.            +.++....|.++.. |....+    
T Consensus         2 kI~viGt--GYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTt-d~~~a~----   74 (414)
T COG1004           2 KITVIGT--GYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTT-DYEEAV----   74 (414)
T ss_pred             ceEEECC--chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEc-CHHHHH----
Confidence            4555665  5544443333322 46899999999887766532            22211122233322 322221    


Q ss_pred             hcccCCCceeEEEEeCC-C---------cccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           89 KYSENEGSFDYAFVDAD-K---------DNYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~-~---------~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                            ...|++|+... +         .......+.+.+.++..-++|...+...|
T Consensus        75 ------~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvG  125 (414)
T COG1004          75 ------KDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVG  125 (414)
T ss_pred             ------hcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCC
Confidence                  34688887631 1         12234566667888888888887777555

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.93  E-value=0.57  Score=37.24  Aligned_cols=101  Identities=20%  Similarity=0.155  Sum_probs=62.5

Q ss_pred             HcCCCEEEEEc-ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIG-VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG-~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ..+++++--+| .|-|..+..+|+++  +.+|+++|.+...-+.+-   +.+|.+..+... .|. +..+.+      .+
T Consensus       179 ~~pG~~vgI~GlGGLGh~aVq~AKAM--G~rV~vis~~~~kkeea~---~~LGAd~fv~~~-~d~-d~~~~~------~~  245 (360)
T KOG0023|consen  179 LGPGKWVGIVGLGGLGHMAVQYAKAM--GMRVTVISTSSKKKEEAI---KSLGADVFVDST-EDP-DIMKAI------MK  245 (360)
T ss_pred             CCCCcEEEEecCcccchHHHHHHHHh--CcEEEEEeCCchhHHHHH---HhcCcceeEEec-CCH-HHHHHH------HH
Confidence            34677777777 45899999999998  589999999876555444   444544322222 132 333333      24


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..|.++-... .-....++.+.++||++|.+++-..
T Consensus       246 ~~dg~~~~v~-~~a~~~~~~~~~~lk~~Gt~V~vg~  280 (360)
T KOG0023|consen  246 TTDGGIDTVS-NLAEHALEPLLGLLKVNGTLVLVGL  280 (360)
T ss_pred             hhcCcceeee-eccccchHHHHHHhhcCCEEEEEeC
Confidence            5565543211 1133456778899999999998543

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=93.87  E-value=0.13  Score=37.02  Aligned_cols=44  Identities=16%  Similarity=0.040  Sum_probs=31.5

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHH
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLP   62 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~   62 (187)
                      ..+|.+|+-+|.| .|..++.++..+  +.+++.+|..+...+..+.
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~   61 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLES   61 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhc
Confidence            4578899999988 567778888887  4799999998776554443

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=93.86  E-value=0.83  Score=36.26  Aligned_cols=102  Identities=19%  Similarity=0.238  Sum_probs=58.9

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +..++.+||..|+| .|..++.+|+... ..++++++.+++..+.+++    .+....+.....+..+.+....    ..
T Consensus       164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~i~~~~----~~  234 (347)
T cd05278         164 GIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE----AGATDIINPKNGDIVEQILELT----GG  234 (347)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH----hCCcEEEcCCcchHHHHHHHHc----CC
Confidence            34566788887764 4667777888753 2478888877766655543    2321111112222223333321    23


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.+|+++-...   ....++.+++.|+++|.++.-
T Consensus       235 ~~~d~vld~~g---~~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         235 RGVDCVIEAVG---FEETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             CCCcEEEEccC---CHHHHHHHHHHhhcCCEEEEE
Confidence            57998874221   124677788999999998853

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=93.84  E-value=1.2  Score=35.29  Aligned_cols=101  Identities=18%  Similarity=0.265  Sum_probs=62.1

Q ss_pred             HHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      .+..++.+||-.|+|. |..++.+|+..  +.+++++..+++..+.+++    .+....+.....+..+.+..+.    .
T Consensus       155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~--g~~v~~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~  224 (337)
T cd08261         155 AGVTAGDTVLVVGAGPIGLGVIQVAKAR--GARVIVVDIDDERLEFARE----LGADDTINVGDEDVAARLRELT----D  224 (337)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEECCCHHHHHHHHH----hCCCEEecCcccCHHHHHHHHh----C
Confidence            3455777899988763 67778888875  5788888877776665543    2322212222223333333331    1


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ...+|+++-...   -...+..+++.|+++|.++.
T Consensus       225 ~~~vd~vld~~g---~~~~~~~~~~~l~~~G~~i~  256 (337)
T cd08261         225 GEGADVVIDATG---NPASMEEAVELVAHGGRVVL  256 (337)
T ss_pred             CCCCCEEEECCC---CHHHHHHHHHHHhcCCEEEE
Confidence            346998875422   13456778899999998875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=93.73  E-value=1.1  Score=35.78  Aligned_cols=93  Identities=13%  Similarity=0.068  Sum_probs=58.1

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ...++.+||-.|+| .|..+..+|+..  +.++++++.+++..+.+++    .|...   ++...  +.         ..
T Consensus       162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~--G~~vi~~~~~~~~~~~a~~----~Ga~~---vi~~~--~~---------~~  221 (329)
T TIGR02822       162 SLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHVMTRGAAARRLALA----LGAAS---AGGAY--DT---------PP  221 (329)
T ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----hCCce---ecccc--cc---------Cc
Confidence            34567899999864 445556677764  5689999998887766654    34321   11100  10         02


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +.+|+++.....   ...+....+.|+++|.+++-..
T Consensus       222 ~~~d~~i~~~~~---~~~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       222 EPLDAAILFAPA---GGLVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             ccceEEEECCCc---HHHHHHHHHhhCCCcEEEEEec
Confidence            457876543211   3467888899999999987543

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=93.70  E-value=1.4  Score=35.09  Aligned_cols=100  Identities=20%  Similarity=0.247  Sum_probs=57.8

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ..++.+||-.|+| .|..++.+++... ..++++++.+++....+++    .+....+.....+....+..+.    ...
T Consensus       164 ~~~g~~vlI~g~g~~g~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~i~~~~----~~~  234 (345)
T cd08286         164 VKPGDTVAIVGAGPVGLAALLTAQLYS-PSKIIMVDLDDNRLEVAKK----LGATHTVNSAKGDAIEQVLELT----DGR  234 (345)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCceeccccccHHHHHHHHh----CCC
Confidence            4566777776653 3345555666653 2678888887766655543    3432222322233333333332    134


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+|+++- ..  .....++.+++.|+++|.++.
T Consensus       235 ~~d~vld-~~--g~~~~~~~~~~~l~~~g~~v~  264 (345)
T cd08286         235 GVDVVIE-AV--GIPATFELCQELVAPGGHIAN  264 (345)
T ss_pred             CCCEEEE-CC--CCHHHHHHHHHhccCCcEEEE
Confidence            6998873 32  223457888899999999885

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=93.65  E-value=2.9  Score=33.15  Aligned_cols=97  Identities=23%  Similarity=0.165  Sum_probs=53.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      .++++|+-+|+  |..+..++..+.  ...+|+.++.+++......+.   .+.    ....  ..+....+       .
T Consensus       176 l~~~~V~ViGa--G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~---~g~----~~~~--~~~~~~~l-------~  237 (311)
T cd05213         176 LKGKKVLVIGA--GEMGELAAKHLAAKGVAEITIANRTYERAEELAKE---LGG----NAVP--LDELLELL-------N  237 (311)
T ss_pred             ccCCEEEEECc--HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH---cCC----eEEe--HHHHHHHH-------h
Confidence            46889999998  444444444332  135799999987654333222   232    2221  11222222       4


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .+|+||.......+...++.+.+....++.+++|-..
T Consensus       238 ~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         238 EADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             cCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCC
Confidence            6899998755444434445554444346788886554

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=93.63  E-value=0.063  Score=41.68  Aligned_cols=92  Identities=22%  Similarity=0.146  Sum_probs=61.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .....++|+|||.|-.+.   .  .+...+.++|++...+..+++.       +...+..+|+.....       ...+|
T Consensus        44 ~~gsv~~d~gCGngky~~---~--~p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~-------~~~s~  104 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLG---V--NPLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPF-------REESF  104 (293)
T ss_pred             CCcceeeecccCCcccCc---C--CCcceeeecchhhhhccccccC-------CCceeehhhhhcCCC-------CCCcc
Confidence            346679999999995431   1  1367899999988877766543       112566677765422       35789


Q ss_pred             eEEEEeCCC------cccHHHHHHHHhccCCCeEEEE
Q 029803           98 DYAFVDADK------DNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        98 D~i~~d~~~------~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |.++.-+..      ......++++.+.++|||-..+
T Consensus       105 d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen  105 DAALSIAVIHHLSTRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             ccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEE
Confidence            988754321      2234578999999999998665

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.62  E-value=0.41  Score=39.16  Aligned_cols=73  Identities=25%  Similarity=0.276  Sum_probs=46.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC--CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCCc
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPE--DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGS   96 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~--~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~   96 (187)
                      ++||-||||  ..+...|..+..  ..+|+..|.+++..+.+.....     .+++....|+.+.  +..+.      ..
T Consensus         2 ~~ilviGaG--~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li------~~   68 (389)
T COG1748           2 MKILVIGAG--GVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALI------KD   68 (389)
T ss_pred             CcEEEECCc--hhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHH------hc
Confidence            579999994  444443333221  3799999999887777765532     2677877777553  33443      45


Q ss_pred             eeEEEEeCCC
Q 029803           97 FDYAFVDADK  106 (187)
Q Consensus        97 ~D~i~~d~~~  106 (187)
                      +|+|+.-...
T Consensus        69 ~d~VIn~~p~   78 (389)
T COG1748          69 FDLVINAAPP   78 (389)
T ss_pred             CCEEEEeCCc
Confidence            6988865433

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.54  E-value=0.63  Score=37.33  Aligned_cols=96  Identities=13%  Similarity=0.112  Sum_probs=57.2

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeC---CcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDV---NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~---~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      .++.+||-+|+| .|..+..+|+..  +.++++++.   +++..+.++    ..+.. .+.....+..+ ..       .
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~~~~~----~~Ga~-~v~~~~~~~~~-~~-------~  235 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLR--GFEVYVLNRRDPPDPKADIVE----ELGAT-YVNSSKTPVAE-VK-------L  235 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHH----HcCCE-EecCCccchhh-hh-------h
Confidence            467889999875 356677777775  458999986   455555444    33432 12111111111 11       1


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ...+|+||-...   ....+..+.+.|+++|.+++-..
T Consensus       236 ~~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         236 VGEFDLIIEATG---VPPLAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             cCCCCEEEECcC---CHHHHHHHHHHccCCcEEEEEec
Confidence            257897775432   22367788899999999887443

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.50  E-value=3.6  Score=34.78  Aligned_cols=103  Identities=17%  Similarity=0.083  Sum_probs=55.2

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC---CCEEEEEeCCcchHHHHHHHHHh---cCCC-------CcEEEEEcchHHHHHHH
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKK---AGVD-------HKINFIESEALSVLDQL   87 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~---~~~~-------~~~~~~~~d~~~~~~~~   87 (187)
                      ++|.-||+|....  .+|..+..   +.+|+++|.+++.++..++....   .++.       .+.-....|..+.    
T Consensus         2 m~I~ViG~GyvGl--~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~----   75 (473)
T PLN02353          2 VKICCIGAGYVGG--PTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKH----   75 (473)
T ss_pred             CEEEEECCCHHHH--HHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHH----
Confidence            3577787755443  33333321   36799999999887765432100   0000       0001111122111    


Q ss_pred             hhcccCCCceeEEEEeCC-Cc--------------ccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           88 LKYSENEGSFDYAFVDAD-KD--------------NYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~-~~--------------~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                            -...|++|+... +.              ......+.+.+.|++|-++++..+...|
T Consensus        76 ------i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~G  132 (473)
T PLN02353         76 ------VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVK  132 (473)
T ss_pred             ------HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCC
Confidence                  135688877521 11              2344566677888998888888777666

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=93.41  E-value=0.81  Score=31.26  Aligned_cols=93  Identities=15%  Similarity=0.106  Sum_probs=48.8

Q ss_pred             HHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   89 (187)
Q Consensus        10 ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   89 (187)
                      +...+++..+..+|+|+|-|.=......++..  +..|+++|+.+.       +..     ..+.++..|..+.-..+  
T Consensus         4 ~a~~ia~~~~~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~i--   67 (127)
T PF03686_consen    4 FAEYIARLNNYGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEI--   67 (127)
T ss_dssp             HHHHHHHHS-SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S----------------STTEE---SSS--HHH--
T ss_pred             HHHHHHHhCCCCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc-------ccc-----cCcceeeecccCCCHHH--
Confidence            44445556677899999998665443333322  579999999987       111     23667777876632222  


Q ss_pred             cccCCCceeEEEEeCCCcccHHHHHHHHhccCC
Q 029803           90 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKV  122 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~  122 (187)
                          =...|+|+.-..+...+..+-.+.+.+.-
T Consensus        68 ----Y~~a~lIYSiRPP~El~~~il~lA~~v~a   96 (127)
T PF03686_consen   68 ----YEGADLIYSIRPPPELQPPILELAKKVGA   96 (127)
T ss_dssp             ----HTTEEEEEEES--TTSHHHHHHHHHHHT-
T ss_pred             ----hcCCcEEEEeCCChHHhHHHHHHHHHhCC
Confidence                15789999887777776666666554443

; PDB: 2K4M_A.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=93.36  E-value=0.52  Score=37.14  Aligned_cols=88  Identities=11%  Similarity=0.063  Sum_probs=54.1

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .+++++|-+|+| .|..++.+|+... ...++++|.+++.++.+.+.    .      ++  +..+.   .      ...
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G-~~~v~~~~~~~~rl~~a~~~----~------~i--~~~~~---~------~~g  200 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAG-GSPPAVWETNPRRRDGATGY----E------VL--DPEKD---P------RRD  200 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHhhhhc----c------cc--Chhhc---c------CCC
Confidence            356688888865 5667777887754 33477788877766554421    1      11  11110   0      256


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|+||-..   .....++.+.+.++++|.+++-.
T Consensus       201 ~Dvvid~~---G~~~~~~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       201 YRAIYDAS---GDPSLIDTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             CCEEEECC---CCHHHHHHHHHhhhcCcEEEEEe
Confidence            89777432   22346678889999999998743

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=93.34  E-value=0.86  Score=32.27  Aligned_cols=95  Identities=18%  Similarity=0.103  Sum_probs=57.8

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC------CCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG------VDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      +|.-||+|.+.+++....... +.+|+....+++.++..++.-....      ++.++.+ ..|..+.+          .
T Consensus         1 KI~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~----------~   68 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADN-GHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEAL----------E   68 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHC-TEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHH----------T
T ss_pred             CEEEECcCHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHh----------C
Confidence            356678876665544333222 4589999999887776665432111      1123433 44554432          4


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..|+|++.-.......+++++.+.++++-.++.
T Consensus        69 ~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   69 DADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             T-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred             cccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence            679999977777778899999999988777775

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=93.27  E-value=2  Score=34.72  Aligned_cols=102  Identities=20%  Similarity=0.294  Sum_probs=59.7

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhccc
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSE   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~   92 (187)
                      ...++.+||-.|+| .|..++.+|+... ..+|+++|.+++..+.+++    .+...-+....  .+..+.+..+.    
T Consensus       182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~----  252 (368)
T TIGR02818       182 KVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEIT----  252 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHh----
Confidence            34567889998875 3556667777653 2379999999888777754    24321111111  11222222221    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  130 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~  130 (187)
                       .+.+|+++-...   ....+..+++.++++ |.++.-.
T Consensus       253 -~~g~d~vid~~G---~~~~~~~~~~~~~~~~G~~v~~g  287 (368)
T TIGR02818       253 -DGGVDYSFECIG---NVNVMRAALECCHKGWGESIIIG  287 (368)
T ss_pred             -CCCCCEEEECCC---CHHHHHHHHHHhhcCCCeEEEEe
Confidence             236897764322   234667788899886 8877643

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=93.22  E-value=0.31  Score=38.54  Aligned_cols=94  Identities=10%  Similarity=-0.025  Sum_probs=54.3

Q ss_pred             CEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC----CcEEEEEcchHHHHHHHhhcccCC
Q 029803           21 KKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD----HKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        21 ~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      .+|+-+|+|  .|+.+..|++.   +..|+.++.+++.++..++.   .|+.    .....+......  +      ...
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~---G~~V~lv~r~~~~~~~i~~~---~Gl~i~~~g~~~~~~~~~~~--~------~~~   68 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA---GLPVRLILRDRQRLAAYQQA---GGLTLVEQGQASLYAIPAET--A------DAA   68 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC---CCCeEEEEechHHHHHHhhc---CCeEEeeCCcceeeccCCCC--c------ccc
Confidence            468889987  34455555543   46799999876555544431   1210    000111100000  0      013


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +.||+||+.....+....++.+.+.+.++..+++
T Consensus        69 ~~~D~viv~vK~~~~~~al~~l~~~l~~~t~vv~  102 (305)
T PRK05708         69 EPIHRLLLACKAYDAEPAVASLAHRLAPGAELLL  102 (305)
T ss_pred             cccCEEEEECCHHhHHHHHHHHHhhCCCCCEEEE
Confidence            5899999976555567788888899999986654

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.18  E-value=2.1  Score=34.52  Aligned_cols=83  Identities=14%  Similarity=0.144  Sum_probs=48.0

Q ss_pred             HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc---------------------chHHHHHHHHHhcCCCCcEE
Q 029803           17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKIN   74 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~~~   74 (187)
                      ..+..+|+-||||. |...+..+.... -++++.+|.+.                     ...+.+++++...+-.-.++
T Consensus        21 ~L~~~~VlIiG~GglGs~va~~La~aG-vg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~   99 (338)
T PRK12475         21 KIREKHVLIVGAGALGAANAEALVRAG-IGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV   99 (338)
T ss_pred             hhcCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence            34667899999973 333333222222 36899999764                     23455666776655444466


Q ss_pred             EEEcchH-HHHHHHhhcccCCCceeEEEEeCCC
Q 029803           75 FIESEAL-SVLDQLLKYSENEGSFDYAFVDADK  106 (187)
Q Consensus        75 ~~~~d~~-~~~~~~~~~~~~~~~~D~i~~d~~~  106 (187)
                      .+..+.. +.+..+      -..+|+|+...+.
T Consensus       100 ~~~~~~~~~~~~~~------~~~~DlVid~~D~  126 (338)
T PRK12475        100 PVVTDVTVEELEEL------VKEVDLIIDATDN  126 (338)
T ss_pred             EEeccCCHHHHHHH------hcCCCEEEEcCCC
Confidence            6666543 233333      2579988765443

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=93.12  E-value=0.81  Score=37.64  Aligned_cols=103  Identities=19%  Similarity=0.223  Sum_probs=61.8

Q ss_pred             HcCCCEEEEEc--ccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhc----CCCCcEEEEE----cchHHHHH
Q 029803           17 LVNAKKTIEIG--VFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKA----GVDHKINFIE----SEALSVLD   85 (187)
Q Consensus        17 ~~~~~~vLeiG--~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~----~~~~~~~~~~----~d~~~~~~   85 (187)
                      ..++.+|+-+|  .+.|..++.+|+.... ..+|+++|.+++.++.+++.....    +.  ...++.    .+..+.+.
T Consensus       173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga--~~~~i~~~~~~~~~~~v~  250 (410)
T cd08238         173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGI--ELLYVNPATIDDLHATLM  250 (410)
T ss_pred             CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCc--eEEEECCCccccHHHHHH
Confidence            34567888887  3467777778876421 237999999999998888753211    11  112222    12323333


Q ss_pred             HHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           86 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+.    ....+|+++....   ....+..+.+.++++|.+++
T Consensus       251 ~~t----~g~g~D~vid~~g---~~~~~~~a~~~l~~~G~~v~  286 (410)
T cd08238         251 ELT----GGQGFDDVFVFVP---VPELVEEADTLLAPDGCLNF  286 (410)
T ss_pred             HHh----CCCCCCEEEEcCC---CHHHHHHHHHHhccCCeEEE
Confidence            321    1346998876432   24567778899998875543

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=92.96  E-value=2.3  Score=34.34  Aligned_cols=103  Identities=18%  Similarity=0.285  Sum_probs=60.2

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhccc
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSE   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~   92 (187)
                      ...++.+||-+|+| .|..+..+|+... ..+|+++|.+++..+.+++    .+...-+.....  +..+.+..+.    
T Consensus       183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~v~~~~----  253 (368)
T cd08300         183 KVEPGSTVAVFGLGAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAKK----FGATDCVNPKDHDKPIQQVLVEMT----  253 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCEEEcccccchHHHHHHHHHh----
Confidence            35667889988864 4455666777653 2379999999887776653    343221211111  1223333321    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeCC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  131 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                       .+.+|+|+-...   ....+..+.+.++++ |.++.-..
T Consensus       254 -~~g~d~vid~~g---~~~~~~~a~~~l~~~~G~~v~~g~  289 (368)
T cd08300         254 -DGGVDYTFECIG---NVKVMRAALEACHKGWGTSVIIGV  289 (368)
T ss_pred             -CCCCcEEEECCC---ChHHHHHHHHhhccCCCeEEEEcc
Confidence             236898874322   234677788899887 88876443

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PTZ00357 methyltransferase; Provisional

Probab=92.92  E-value=0.5  Score=41.43  Aligned_cols=104  Identities=14%  Similarity=0.073  Sum_probs=64.2

Q ss_pred             EEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHHHHHHHH---hcCC-----CCcEEEEEcchHHHHHHHhh-
Q 029803           22 KTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIK---KAGV-----DHKINFIESEALSVLDQLLK-   89 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~---~~~~-----~~~~~~~~~d~~~~~~~~~~-   89 (187)
                      .|+-+|+|-|-......++.   .-..+|+++|-+|..+.....+..   .+..     .++++++..|..++-..... 
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            58999999997655444433   334689999999886655554432   2211     35699999999876221000 


Q ss_pred             c---ccCCCceeEEEEe-----CCCcccHHHHHHHHhccCC----CeE
Q 029803           90 Y---SENEGSFDYAFVD-----ADKDNYCNYHERLMKLLKV----GGI  125 (187)
Q Consensus        90 ~---~~~~~~~D~i~~d-----~~~~~~~~~~~~~~~~L~~----gG~  125 (187)
                      .   ....+++|+|+..     ++-+-.++-++-+.+.||+    +|+
T Consensus       783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence            0   0012379999764     3445556667777777765    665

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=92.84  E-value=0.69  Score=33.26  Aligned_cols=100  Identities=12%  Similarity=0.040  Sum_probs=57.6

Q ss_pred             EcccccHHHHHHHhhCCCCCEEEEEeC--CcchHH---HHHHHHHhcCCCCcEE-EEEcchHHHHHHHhhcccCCCceeE
Q 029803           26 IGVFTGYSLLLTALTIPEDGQITAIDV--NRETYE---IGLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        26 iG~g~G~~~~~la~~~~~~~~v~~iD~--~~~~~~---~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      +|=|.=..++.+++......++++.-.  ..+..+   .+.++++...-.+ ++ +..-|+.+.-..+.   ....+||.
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDat~l~~~~~---~~~~~FDr   78 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDATKLHKHFR---LKNQRFDR   78 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCCCccccccc---ccCCcCCE
Confidence            455555777788887654556666544  333322   2335555432222 33 34455544333221   12578999


Q ss_pred             EEEeCCCcc----------------cHHHHHHHHhccCCCeEEEEe
Q 029803          100 AFVDADKDN----------------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus       100 i~~d~~~~~----------------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+....+..                ...+++.+.++|+++|.|.+.
T Consensus        79 IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVT  124 (166)
T PF10354_consen   79 IIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVT  124 (166)
T ss_pred             EEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            987743322                245888889999999999883

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=92.71  E-value=3.9  Score=33.60  Aligned_cols=124  Identities=19%  Similarity=0.190  Sum_probs=77.2

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      .+|.+..+=+.++.+..+..++-..+|.+..+..+...++++.+++..+. =.......++.+...++  .+.++-.+-.
T Consensus        53 gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv--~v~~~d~~d~  130 (386)
T PF01053_consen   53 GNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGV--EVTFVDPTDL  130 (386)
T ss_dssp             C-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTS--EEEEESTTSH
T ss_pred             ccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCc--EEEEeCchhH
Confidence            36777888888888888889999999998887777777776788888763 33344555555555554  3555544333


Q ss_pred             HHHHHHhhcccCCCceeEEEEeC--CCcccHHHHHHHHhccCCCe--EEEEeCCCC
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGG--IAVYDNTLW  133 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~--~~~~~~~~~~~~~~~L~~gG--~lv~~~~~~  133 (187)
                      +.+....     .+..++||+..  ++......++.+.++.+..|  .+++|+++-
T Consensus       131 ~~l~~~l-----~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~a  181 (386)
T PF01053_consen  131 EALEAAL-----RPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFA  181 (386)
T ss_dssp             HHHHHHH-----CTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTT
T ss_pred             HHHHhhc-----cccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeecccc
Confidence            4344332     35889999985  23333445666666666665  556666653

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=92.67  E-value=0.057  Score=35.88  Aligned_cols=38  Identities=21%  Similarity=0.552  Sum_probs=27.2

Q ss_pred             ceeEEEEeC---------CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           96 SFDYAFVDA---------DKDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        96 ~~D~i~~d~---------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .||+|++-.         ..+....+++.++.+|+|||.++++---|
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w   47 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPW   47 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---H
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCc
Confidence            489888743         22445679999999999999999975554

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=92.64  E-value=2.3  Score=29.12  Aligned_cols=80  Identities=19%  Similarity=0.223  Sum_probs=48.6

Q ss_pred             CCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEEEcc
Q 029803           20 AKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESE   79 (187)
Q Consensus        20 ~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~d   79 (187)
                      ..+|+-+|+| .|...+..+.... -++++.+|.+.                   ...+.+++++......-+++.+..+
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~G-v~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSG-VGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHT-TSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhC-CCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            4689999996 4543333332223 46899988632                   2346677777765544567777777


Q ss_pred             h-HHHHHHHhhcccCCCceeEEEEeCCC
Q 029803           80 A-LSVLDQLLKYSENEGSFDYAFVDADK  106 (187)
Q Consensus        80 ~-~~~~~~~~~~~~~~~~~D~i~~d~~~  106 (187)
                      . .+....+.      ..+|+|+...+.
T Consensus        81 ~~~~~~~~~~------~~~d~vi~~~d~  102 (135)
T PF00899_consen   81 IDEENIEELL------KDYDIVIDCVDS  102 (135)
T ss_dssp             CSHHHHHHHH------HTSSEEEEESSS
T ss_pred             cccccccccc------cCCCEEEEecCC
Confidence            6 33444442      578999876544

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=92.61  E-value=2.6  Score=34.62  Aligned_cols=105  Identities=15%  Similarity=0.117  Sum_probs=60.9

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHHhhcc
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKYS   91 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~   91 (187)
                      ...++.+||-.|+| .|..++.+|+... ...++.+|.+++.++.+++    .+..   .+..   .+..+.+..+.   
T Consensus       182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~G-a~~vi~~d~~~~r~~~a~~----~Ga~---~v~~~~~~~~~~~v~~~~---  250 (393)
T TIGR02819       182 GVGPGSTVYIAGAGPVGLAAAASAQLLG-AAVVIVGDLNPARLAQARS----FGCE---TVDLSKDATLPEQIEQIL---  250 (393)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHH----cCCe---EEecCCcccHHHHHHHHc---
Confidence            34567788777764 4455566777653 2346667888777777665    2432   2221   12333333321   


Q ss_pred             cCCCceeEEEEeCCCcc-----------cHHHHHHHHhccCCCeEEEEeCCC
Q 029803           92 ENEGSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~-----------~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                       ....+|+++-....+.           ....++++.++++++|.+++-...
T Consensus       251 -~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       251 -GEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             -CCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence             1246897774332211           134788889999999999985543

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=92.54  E-value=3.1  Score=31.36  Aligned_cols=85  Identities=12%  Similarity=0.115  Sum_probs=47.6

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEE
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI   76 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~   76 (187)
                      ..+..+|+-+||| .|...+..+.... -++++.+|.+.                   ...+.+.+++...+..-+++.+
T Consensus        18 ~L~~~~VlivG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          18 KLKNARVLVVGAGGLGSPAAEYLAAAG-VGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHhCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            4456789999996 3443333333333 46888886532                   3345666677665533345555


Q ss_pred             EcchH-HHHHHHhhcccCCCceeEEEEeCCCcc
Q 029803           77 ESEAL-SVLDQLLKYSENEGSFDYAFVDADKDN  108 (187)
Q Consensus        77 ~~d~~-~~~~~~~~~~~~~~~~D~i~~d~~~~~  108 (187)
                      ..... +.+..+.      ..+|+|+...+...
T Consensus        97 ~~~i~~~~~~~~~------~~~DvVi~~~d~~~  123 (228)
T cd00757          97 NERLDAENAEELI------AGYDLVLDCTDNFA  123 (228)
T ss_pred             cceeCHHHHHHHH------hCCCEEEEcCCCHH
Confidence            55442 2233332      56999887654333

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=92.47  E-value=5.5  Score=33.05  Aligned_cols=105  Identities=17%  Similarity=0.186  Sum_probs=57.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc-----cCC
Q 029803           21 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS-----ENE   94 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~   94 (187)
                      ++|--||.|.  .+..+|..+. .+.+|+++|.+++.++..+.     +   ...+...+..+.+......+     ...
T Consensus         4 ~kI~VIGlG~--~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~-----g---~~~~~e~~l~~~l~~~~~~g~l~~~~~~   73 (415)
T PRK11064          4 ETISVIGLGY--IGLPTAAAFASRQKQVIGVDINQHAVDTINR-----G---EIHIVEPDLDMVVKTAVEGGYLRATTTP   73 (415)
T ss_pred             cEEEEECcch--hhHHHHHHHHhCCCEEEEEeCCHHHHHHHHC-----C---CCCcCCCCHHHHHHHHhhcCceeeeccc
Confidence            5677888753  3333443332 25789999999987764321     1   12222222222222110000     001


Q ss_pred             CceeEEEEeCCC----------cccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           95 GSFDYAFVDADK----------DNYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        95 ~~~D~i~~d~~~----------~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      +..|+||+....          .......+.+.+.+++|.+++...+...|
T Consensus        74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pg  124 (415)
T PRK11064         74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVG  124 (415)
T ss_pred             ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCC
Confidence            357899876533          23344567778889998888887666544

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=92.46  E-value=1.8  Score=34.81  Aligned_cols=103  Identities=22%  Similarity=0.336  Sum_probs=66.6

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~   93 (187)
                      +..++.++.-+||| .|..++.-|.... ..+++++|++++.++.|++-    |..+-+.-... |.-+.+..+-     
T Consensus       182 ~v~~G~tvaV~GlGgVGlaaI~gA~~ag-A~~IiAvD~~~~Kl~~A~~f----GAT~~vn~~~~~~vv~~i~~~T-----  251 (366)
T COG1062         182 KVEPGDTVAVFGLGGVGLAAIQGAKAAG-AGRIIAVDINPEKLELAKKF----GATHFVNPKEVDDVVEAIVELT-----  251 (366)
T ss_pred             cCCCCCeEEEEeccHhHHHHHHHHHHcC-CceEEEEeCCHHHHHHHHhc----CCceeecchhhhhHHHHHHHhc-----
Confidence            45677899999987 5667776666655 68999999999999888764    43322222111 3444444432     


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +...|..|--.   .....+++++..+.++|..++-.+
T Consensus       252 ~gG~d~~~e~~---G~~~~~~~al~~~~~~G~~v~iGv  286 (366)
T COG1062         252 DGGADYAFECV---GNVEVMRQALEATHRGGTSVIIGV  286 (366)
T ss_pred             CCCCCEEEEcc---CCHHHHHHHHHHHhcCCeEEEEec
Confidence            33677775432   233477788888888998877444

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=92.43  E-value=2.4  Score=33.70  Aligned_cols=102  Identities=14%  Similarity=0.167  Sum_probs=59.0

Q ss_pred             HHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch---HHHHHHHhh
Q 029803           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA---LSVLDQLLK   89 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~~~~~~   89 (187)
                      .+..++.+||-.|+|. |..++.+|+..  +.+ ++.++.+++..+.+++    .+....+.....+.   .+.+.... 
T Consensus       158 ~~~~~g~~vlI~g~g~vG~~a~~lak~~--G~~~v~~~~~~~~~~~~~~~----~g~~~vi~~~~~~~~~~~~~~~~~~-  230 (343)
T cd05285         158 AGVRPGDTVLVFGAGPIGLLTAAVAKAF--GATKVVVTDIDPSRLEFAKE----LGATHTVNVRTEDTPESAEKIAELL-  230 (343)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----cCCcEEeccccccchhHHHHHHHHh-
Confidence            3455677888877654 66777788875  345 8888887776665543    23221111111121   12222221 


Q ss_pred             cccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           90 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                         ....+|+|+-....   ...+..+++.|+++|.++.-
T Consensus       231 ---~~~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  264 (343)
T cd05285         231 ---GGKGPDVVIECTGA---ESCIQTAIYATRPGGTVVLV  264 (343)
T ss_pred             ---CCCCCCEEEECCCC---HHHHHHHHHHhhcCCEEEEE
Confidence               13569988753221   23567788999999998853

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.42  E-value=3.5  Score=33.88  Aligned_cols=109  Identities=15%  Similarity=0.196  Sum_probs=62.0

Q ss_pred             CCCEEEEEcc-cccH--HHHHHHhhCCC---CCEEEEEe-CCcchHHHHHHHHHhcCCCCcEEEEEcchHHH----HHHH
Q 029803           19 NAKKTIEIGV-FTGY--SLLLTALTIPE---DGQITAID-VNRETYEIGLPIIKKAGVDHKINFIESEALSV----LDQL   87 (187)
Q Consensus        19 ~~~~vLeiG~-g~G~--~~~~la~~~~~---~~~v~~iD-~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~   87 (187)
                      +|..|+=+|- |.|-  +..-+|..+..   ..-++|.| ..+.+.+..+.|..+.+++-.......|....    +..+
T Consensus       100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f  179 (483)
T KOG0780|consen  100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF  179 (483)
T ss_pred             CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence            4445677762 4443  22334444422   23467777 45667777888777666542222333444333    2333


Q ss_pred             hhcccCCCceeEEEEeCC--CcccHHH---HHHHHhccCCCeEEEEeCCC
Q 029803           88 LKYSENEGSFDYAFVDAD--KDNYCNY---HERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~--~~~~~~~---~~~~~~~L~~gG~lv~~~~~  132 (187)
                           ..+.||+|++|..  +..-...   +.++.+.++|+-+|++-|..
T Consensus       180 -----Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas  224 (483)
T KOG0780|consen  180 -----KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS  224 (483)
T ss_pred             -----HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence                 2579999999953  2222334   44456899999988876554

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=92.41  E-value=1.1  Score=35.37  Aligned_cols=88  Identities=18%  Similarity=0.138  Sum_probs=49.0

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-C--CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPE-D--GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~-~--~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .+|.-||+|.  .+..++..+.. +  .+|+++|.+++..+.+++    .+...  . ...+..+.          -...
T Consensus         7 ~~I~IIG~G~--mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----~g~~~--~-~~~~~~~~----------~~~a   67 (307)
T PRK07502          7 DRVALIGIGL--IGSSLARAIRRLGLAGEIVGADRSAETRARARE----LGLGD--R-VTTSAAEA----------VKGA   67 (307)
T ss_pred             cEEEEEeeCH--HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh----CCCCc--e-ecCCHHHH----------hcCC
Confidence            5788888764  33333333221 2  389999999876665543    23211  1 11122111          1457


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      |+|++..........++.+.+.++++.+++
T Consensus        68 DvViiavp~~~~~~v~~~l~~~l~~~~iv~   97 (307)
T PRK07502         68 DLVILCVPVGASGAVAAEIAPHLKPGAIVT   97 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHhhCCCCCEEE
Confidence            888886554445556666667778877554

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=92.39  E-value=0.73  Score=35.64  Aligned_cols=75  Identities=16%  Similarity=0.127  Sum_probs=48.8

Q ss_pred             HHHHHHHHHH---HcCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc
Q 029803            7 HGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   79 (187)
Q Consensus         7 ~~~ll~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   79 (187)
                      ++.++..+.+   ..+...++|.|||.|..+.+++..++    +...++.||...... ++-..+........++-+..|
T Consensus         3 qsSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riD   81 (259)
T PF05206_consen    3 QSSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRID   81 (259)
T ss_pred             HHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEE
Confidence            3455666555   34667899999999999999999884    257899999865443 333334433211235555566


Q ss_pred             hHH
Q 029803           80 ALS   82 (187)
Q Consensus        80 ~~~   82 (187)
                      +.+
T Consensus        82 I~d   84 (259)
T PF05206_consen   82 IKD   84 (259)
T ss_pred             eec
Confidence            654

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=92.38  E-value=2.7  Score=33.49  Aligned_cols=102  Identities=16%  Similarity=0.182  Sum_probs=60.0

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      +..++.+||-.|+| .|..++.+|+..  +. +|+.++.+++..+.+++    .+....+.....+..+.+..+.    .
T Consensus       169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~--G~~~v~~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~l~~~~----~  238 (351)
T cd08233         169 GFKPGDTALVLGAGPIGLLTILALKAA--GASKIIVSEPSEARRELAEE----LGATIVLDPTEVDVVAEVRKLT----G  238 (351)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHH----hCCCEEECCCccCHHHHHHHHh----C
Confidence            34566788888753 345556666664  45 78889888887776643    2432212222233333333321    1


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ...+|+++-...   ....++.+++.|+++|.++.-.
T Consensus       239 ~~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g  272 (351)
T cd08233         239 GGGVDVSFDCAG---VQATLDTAIDALRPRGTAVNVA  272 (351)
T ss_pred             CCCCCEEEECCC---CHHHHHHHHHhccCCCEEEEEc
Confidence            245998875322   1346778889999999988743

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=92.33  E-value=2  Score=34.70  Aligned_cols=101  Identities=19%  Similarity=0.221  Sum_probs=59.4

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ...++.+||-.|+| .|..++.+|+... ...+++++.+++..+.+++    .+...-+.....+..+.+..+.     .
T Consensus       183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G-~~~v~~~~~~~~k~~~~~~----~g~~~~i~~~~~~~~~~v~~~~-----~  252 (365)
T cd08278         183 KPRPGSSIAVFGAGAVGLAAVMAAKIAG-CTTIIAVDIVDSRLELAKE----LGATHVINPKEEDLVAAIREIT-----G  252 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCcEEecCCCcCHHHHHHHHh-----C
Confidence            34567788888764 3566777777764 2369999998877665543    2322111111112223333321     3


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+|+|+-....   ...+..+++.++++|.++.-
T Consensus       253 ~~~d~vld~~g~---~~~~~~~~~~l~~~G~~v~~  284 (365)
T cd08278         253 GGVDYALDTTGV---PAVIEQAVDALAPRGTLALV  284 (365)
T ss_pred             CCCcEEEECCCC---cHHHHHHHHHhccCCEEEEe
Confidence            568987743221   24567888999999998863

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=92.31  E-value=0.43  Score=30.48  Aligned_cols=85  Identities=11%  Similarity=0.045  Sum_probs=52.4

Q ss_pred             EEEEcccccHHHHHHHhhCCC-C---CEEEEE-eCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           23 TIEIGVFTGYSLLLTALTIPE-D---GQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        23 vLeiG~g~G~~~~~la~~~~~-~---~~v~~i-D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      |-=||+  |..+..++..+-. +   .+++.+ +.+++..+...+.+   +    +.+...+..+..+          ..
T Consensus         2 I~iIG~--G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~---~----~~~~~~~~~~~~~----------~a   62 (96)
T PF03807_consen    2 IGIIGA--GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY---G----VQATADDNEEAAQ----------EA   62 (96)
T ss_dssp             EEEEST--SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC---T----TEEESEEHHHHHH----------HT
T ss_pred             EEEECC--CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh---c----cccccCChHHhhc----------cC
Confidence            444555  5555555554421 3   588844 99988776665543   2    4444445555443          47


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      |+||+...+....+.++++ ..+.++..++
T Consensus        63 dvvilav~p~~~~~v~~~i-~~~~~~~~vi   91 (96)
T PF03807_consen   63 DVVILAVKPQQLPEVLSEI-PHLLKGKLVI   91 (96)
T ss_dssp             SEEEE-S-GGGHHHHHHHH-HHHHTTSEEE
T ss_pred             CEEEEEECHHHHHHHHHHH-hhccCCCEEE
Confidence            9999988888888888888 6666666655

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=92.09  E-value=4.3  Score=32.02  Aligned_cols=100  Identities=18%  Similarity=0.206  Sum_probs=60.2

Q ss_pred             HHHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhccc
Q 029803           15 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSE   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~   92 (187)
                      ....++.+||-.|+| .|..++.+|+... +.++++++.+++..+.+++    .+....+.... .+..+.+...     
T Consensus       158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~-g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~v~~~-----  227 (338)
T PRK09422        158 SGIKPGQWIAIYGAGGLGNLALQYAKNVF-NAKVIAVDINDDKLALAKE----VGADLTINSKRVEDVAKIIQEK-----  227 (338)
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHhC-CCeEEEEeCChHHHHHHHH----cCCcEEecccccccHHHHHHHh-----
Confidence            345677788888853 4556666777532 5689999998887777743    24321111111 1212222222     


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                       .+.+|.++.+..   ....++.+++.|+++|.++.
T Consensus       228 -~~~~d~vi~~~~---~~~~~~~~~~~l~~~G~~v~  259 (338)
T PRK09422        228 -TGGAHAAVVTAV---AKAAFNQAVDAVRAGGRVVA  259 (338)
T ss_pred             -cCCCcEEEEeCC---CHHHHHHHHHhccCCCEEEE
Confidence             135787776642   23567888999999999885

>PRK08114 cystathionine beta-lyase; Provisional

Probab=92.01  E-value=6.1  Score=32.59  Aligned_cols=127  Identities=11%  Similarity=0.082  Sum_probs=75.4

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      .+|.+..+=..++.+..+...+-..+|++.....+...+.++.+|++.+. -.......++.+++.|.  .+.++...-.
T Consensus        60 ~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi--~v~~vd~~d~  137 (395)
T PRK08114         60 GTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGV--TTTWFDPLIG  137 (395)
T ss_pred             CChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCc--EEEEECCCCH
Confidence            45777777778888888889999999888777666555666778887643 23444555555666664  2555442222


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCC--cccHHHHHHHHhccCC---CeEEEEeCCCCCcc
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKV---GGIAVYDNTLWGGT  136 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~~--~~~~~~~~~~~~~L~~---gG~lv~~~~~~~~~  136 (187)
                      +.+....     .++-.+|++....  ......++.+.++.+.   |-.+++|+++..+.
T Consensus       138 ~~l~~~l-----~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~  192 (395)
T PRK08114        138 ADIAKLI-----QPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGV  192 (395)
T ss_pred             HHHHHhc-----CCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCcccc
Confidence            3333332     2345789887522  1112234444444444   45777787765443

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=91.95  E-value=3.3  Score=33.37  Aligned_cols=104  Identities=17%  Similarity=0.251  Sum_probs=59.0

Q ss_pred             HHHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhcc
Q 029803           15 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYS   91 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~   91 (187)
                      .+..++.+||-.|+| .|..++.+|+... ..+|++++.+++..+.+++    .+....+.....  +..+.+..+.   
T Consensus       183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~v~~~~---  254 (369)
T cd08301         183 AKVKKGSTVAIFGLGAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAKK----FGVTEFVNPKDHDKPVQEVIAEMT---  254 (369)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCceEEcccccchhHHHHHHHHh---
Confidence            345677889888864 3445566677653 2379999999887776643    343211211111  1222233321   


Q ss_pred             cCCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeCC
Q 029803           92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  131 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                        .+.+|+++- ..  .....+..+++.++++ |.++.-..
T Consensus       255 --~~~~d~vid-~~--G~~~~~~~~~~~~~~~~g~~v~~g~  290 (369)
T cd08301         255 --GGGVDYSFE-CT--GNIDAMISAFECVHDGWGVTVLLGV  290 (369)
T ss_pred             --CCCCCEEEE-CC--CChHHHHHHHHHhhcCCCEEEEECc
Confidence              236896663 21  1234566778889996 88876443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=91.85  E-value=5.5  Score=33.17  Aligned_cols=138  Identities=12%  Similarity=0.128  Sum_probs=77.1

Q ss_pred             cCCCEEEEEc-ccccHH--HHHHHhhCC---CCCEEEEEeC-CcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029803           18 VNAKKTIEIG-VFTGYS--LLLTALTIP---EDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY   90 (187)
Q Consensus        18 ~~~~~vLeiG-~g~G~~--~~~la~~~~---~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   90 (187)
                      .+|..|+-+| =|+|-+  +.-+|..+.   ...-++++|. -|.+++..+....+.+.+-.-.-...|..++...-...
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~  177 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEK  177 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHH
Confidence            3567788888 345533  233444432   2345788884 56677777777666554311111112333332221100


Q ss_pred             ccCCCceeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHHhhc
Q 029803           91 SENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD  165 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  165 (187)
                       ...+.||+|++|..-     +...+-+.++.+.++|+-+|++-|....-.               .....+.|++.+  
T Consensus       178 -ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQd---------------A~~~A~aF~e~l--  239 (451)
T COG0541         178 -AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQD---------------AVNTAKAFNEAL--  239 (451)
T ss_pred             -HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchH---------------HHHHHHHHhhhc--
Confidence             114679999999532     234455677789999998887766653221               344478888876  


Q ss_pred             CCCeEEEeee
Q 029803          166 DPRVQLSHVA  175 (187)
Q Consensus       166 ~~~~~~~~lp  175 (187)
                        +++.+++.
T Consensus       240 --~itGvIlT  247 (451)
T COG0541         240 --GITGVILT  247 (451)
T ss_pred             --CCceEEEE
Confidence              35555554

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=91.84  E-value=4.5  Score=32.65  Aligned_cols=96  Identities=20%  Similarity=0.228  Sum_probs=54.8

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++++||-.|+| .|..++.+|+..  +.++++++.+++....+.   +..+..   .++.....+.+...      .+.
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~--Ga~vi~~~~~~~~~~~~~---~~~Ga~---~vi~~~~~~~~~~~------~~~  247 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAF--GLKVTVISSSSNKEDEAI---NRLGAD---SFLVSTDPEKMKAA------IGT  247 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCcchhhhHH---HhCCCc---EEEcCCCHHHHHhh------cCC
Confidence            466788888864 455666677765  467888887765433222   223432   12211111222222      135


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|++| |..  .....++.+++.++++|.++.-.
T Consensus       248 ~D~vi-d~~--g~~~~~~~~~~~l~~~G~iv~vG  278 (360)
T PLN02586        248 MDYII-DTV--SAVHALGPLLGLLKVNGKLITLG  278 (360)
T ss_pred             CCEEE-ECC--CCHHHHHHHHHHhcCCcEEEEeC
Confidence            89887 332  12346777889999999988643

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=91.72  E-value=0.88  Score=38.09  Aligned_cols=96  Identities=16%  Similarity=0.109  Sum_probs=65.3

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803           22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  101 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  101 (187)
                      +++.+|||.--....+-+..  -..|+.+|.|+..++.....-..  -....++...|.....       .++++||.|+
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G--~~dI~~iD~S~V~V~~m~~~~~~--~~~~~~~~~~d~~~l~-------fedESFdiVI  119 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNG--FEDITNIDSSSVVVAAMQVRNAK--ERPEMQMVEMDMDQLV-------FEDESFDIVI  119 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcC--CCCceeccccHHHHHHHHhcccc--CCcceEEEEecchhcc-------CCCcceeEEE
Confidence            79999998887766665542  34799999999887766654321  1245778888876532       2468899886


Q ss_pred             EeCC-------------CcccHHHHHHHHhccCCCeEEEE
Q 029803          102 VDAD-------------KDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus       102 ~d~~-------------~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .-+.             .......+...+++++++|..+.
T Consensus       120 dkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s  159 (482)
T KOG2352|consen  120 DKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS  159 (482)
T ss_pred             ecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence            4321             11234567788899999998655

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=91.71  E-value=3.8  Score=32.27  Aligned_cols=97  Identities=12%  Similarity=0.094  Sum_probs=54.4

Q ss_pred             CCCEEEEE--c-ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           19 NAKKTIEI--G-VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        19 ~~~~vLei--G-~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ++..++-+  | .+.|..++.+|+..  +.++++++.+++..+.+++    .+...-+.....+..+.+..+.    ...
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~v~~~~----~~~  211 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRRKEQVDLLKK----IGAEYVLNSSDPDFLEDLKELI----AKL  211 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEECCCccHHHHHHHHh----CCC
Confidence            34455544  3 34566777788775  5689999988877776654    3432212211223333333321    124


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+|+++-....    ......++.++++|.++.-
T Consensus       212 ~~d~vid~~g~----~~~~~~~~~l~~~G~~v~~  241 (324)
T cd08291         212 NATIFFDAVGG----GLTGQILLAMPYGSTLYVY  241 (324)
T ss_pred             CCcEEEECCCc----HHHHHHHHhhCCCCEEEEE
Confidence            68987742221    2234567889999998764

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=91.52  E-value=3.8  Score=33.01  Aligned_cols=102  Identities=21%  Similarity=0.334  Sum_probs=58.8

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhccc
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSE   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~   92 (187)
                      ...++.+||-+|+| .|..++.+|+... ..+|++++.+++..+.+++    .+....+.....  +..+.+..+.    
T Consensus       181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~----  251 (365)
T cd08277         181 KVEPGSTVAVFGLGAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMT----  251 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHh----
Confidence            34567889888864 3445566777653 2379999998887776643    243221111111  1122233321    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  130 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~  130 (187)
                       ...+|+|+-...   ....+..+++.++++ |.++.-.
T Consensus       252 -~~g~d~vid~~g---~~~~~~~~~~~l~~~~G~~v~~g  286 (365)
T cd08277         252 -GGGVDYSFECTG---NADLMNEALESTKLGWGVSVVVG  286 (365)
T ss_pred             -CCCCCEEEECCC---ChHHHHHHHHhcccCCCEEEEEc
Confidence             246898774322   134667788899885 8887643

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=91.43  E-value=0.9  Score=35.76  Aligned_cols=94  Identities=16%  Similarity=0.031  Sum_probs=60.3

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH-HHhhcccCCCceeEE
Q 029803           22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGSFDYA  100 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~D~i  100 (187)
                      +++|+.||.|..++-+-.+.  -..+.++|+++.+.+.-+.|+.        ....+|..+.-. .+.      +.+|++
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~------~~~D~l   65 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLP------KDVDLL   65 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHH------HT-SEE
T ss_pred             cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc--------cccccccccccccccc------ccceEE
Confidence            68999999999998887752  2468889999999999888873        778888876433 331      159998


Q ss_pred             EEeCCCc---------------c-cHHHHHHHHhccCCCeEEEEeCCC
Q 029803          101 FVDADKD---------------N-YCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus       101 ~~d~~~~---------------~-~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +.....+               . .-..+-.+.+.++| -+++++|+-
T Consensus        66 ~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v~~~~P-k~~~~ENV~  112 (335)
T PF00145_consen   66 IGGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIVKELKP-KYFLLENVP  112 (335)
T ss_dssp             EEE---TTTSTTSTHHCCCCHTTSHHHHHHHHHHHHS--SEEEEEEEG
T ss_pred             EeccCCceEeccccccccccccchhhHHHHHHHhhccc-eEEEecccc
Confidence            8653211               1 11122333467788 567777764

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=91.36  E-value=5.1  Score=33.38  Aligned_cols=103  Identities=20%  Similarity=0.291  Sum_probs=60.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh---cCC-----CCcEEEEEcchHHHHHHHhhc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK---AGV-----DHKINFIESEALSVLDQLLKY   90 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~-----~~~~~~~~~d~~~~~~~~~~~   90 (187)
                      ++.+|--||.  |+.++.+|..+..+.+|+++|++++.++..++-...   .++     ..+.. ...+. +.   .   
T Consensus         5 ~~mkI~vIGl--GyvGlpmA~~la~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~-~t~~~-~~---~---   74 (425)
T PRK15182          5 DEVKIAIIGL--GYVGLPLAVEFGKSRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLK-FTSEI-EK---I---   74 (425)
T ss_pred             CCCeEEEECc--CcchHHHHHHHhcCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCee-EEeCH-HH---H---
Confidence            5567777765  777777777776567999999999887766522100   000     00111 11121 11   1   


Q ss_pred             ccCCCceeEEEEeCC-C------cc---cHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           91 SENEGSFDYAFVDAD-K------DN---YCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~-~------~~---~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                          ...|++|+... +      .+   .....+.+.+.|++|.+++...+...|
T Consensus        75 ----~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pg  125 (425)
T PRK15182         75 ----KECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPG  125 (425)
T ss_pred             ----cCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence                46788887632 2      11   222345667889999888887777555

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=91.34  E-value=1.6  Score=34.97  Aligned_cols=99  Identities=13%  Similarity=-0.015  Sum_probs=65.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC-cee
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-SFD   98 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~D   98 (187)
                      ..+++|+.||.|...+-+..+.  -.-+.++|+++.+.+.-+.|+..      ..++..|..+....-.     .. .+|
T Consensus         3 ~~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~-----~~~~~D   69 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEAL-----RKSDVD   69 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhc-----cccCCC
Confidence            4689999999999988777642  23577899999998888887642      4566677765433211     12 789


Q ss_pred             EEEEeCCCcc----------------cHHHHHHHHhccCCCeEEEEeCCC
Q 029803           99 YAFVDADKDN----------------YCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        99 ~i~~d~~~~~----------------~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +++-....+.                ..-.+-++...++| -.+++.|+-
T Consensus        70 vligGpPCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P-~~fv~ENV~  118 (328)
T COG0270          70 VLIGGPPCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP-KFFVLENVK  118 (328)
T ss_pred             EEEeCCCCcchhhcCcccCCcCccceeeHHHHHHHHhhCC-CEEEEecCc
Confidence            8875421111                11234455678888 788887764

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=91.29  E-value=1.4  Score=35.51  Aligned_cols=97  Identities=11%  Similarity=-0.033  Sum_probs=56.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHH-hcCCC------CcEEEEEcchHHHHHHHhhc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK-KAGVD------HKINFIESEALSVLDQLLKY   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~------~~~~~~~~d~~~~~~~~~~~   90 (187)
                      ++..+|.-||+|.-  +..++..+...+.++....+++..+..++.-. ...++      .++. ...|..+.   +   
T Consensus         5 ~~~mkI~IiGaGa~--G~alA~~La~~g~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~-~t~d~~~a---~---   75 (341)
T PRK12439          5 KREPKVVVLGGGSW--GTTVASICARRGPTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLR-ATTDFAEA---A---   75 (341)
T ss_pred             cCCCeEEEECCCHH--HHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeE-EECCHHHH---H---
Confidence            45578999988544  33344433334467777777776665554311 00111      1121 22232221   1   


Q ss_pred             ccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803           91 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                          ...|+|++..........++++.+.++++..++
T Consensus        76 ----~~aDlVilavps~~~~~vl~~i~~~l~~~~~vI  108 (341)
T PRK12439         76 ----NCADVVVMGVPSHGFRGVLTELAKELRPWVPVV  108 (341)
T ss_pred             ----hcCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence                567999987766677788888888898886444

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=91.28  E-value=4.1  Score=29.18  Aligned_cols=109  Identities=18%  Similarity=0.204  Sum_probs=60.5

Q ss_pred             cHHHHHHHHHHHHH--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            4 LTIHGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         4 ~~~~~~ll~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      +..+.+.|...+..  ....+|+=|||=+-+..+.-  ...+..+++..|.+...        +..+- +...++-.+..
T Consensus         8 s~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF--------~~~~~-~~F~fyD~~~p   76 (162)
T PF10237_consen    8 SDETAEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRF--------EQFGG-DEFVFYDYNEP   76 (162)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchH--------HhcCC-cceEECCCCCh
Confidence            34455555554443  45578999998666554433  22236789999998764        22221 11233333333


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCC--cccH-HHHHHHHhccCCCeEEEE
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDADK--DNYC-NYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~~--~~~~-~~~~~~~~~L~~gG~lv~  128 (187)
                      ..++...     .++||+|++|+.-  +... ...+.+.-++++++.+++
T Consensus        77 ~~~~~~l-----~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~  121 (162)
T PF10237_consen   77 EELPEEL-----KGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIIL  121 (162)
T ss_pred             hhhhhhc-----CCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEE
Confidence            3333321     4799999999753  2222 333444446677777776

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=91.25  E-value=3.2  Score=33.44  Aligned_cols=98  Identities=21%  Similarity=0.265  Sum_probs=56.1

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      .++.+||-.|+| .|..+..+|+...  .+ +++++.+++..+.+++    .+....+.....+..+.+....    ...
T Consensus       186 ~~g~~VlI~g~g~vG~~~~~lak~~G--~~~vi~~~~s~~~~~~~~~----~g~~~v~~~~~~~~~~~l~~~~----~~~  255 (367)
T cd08263         186 RPGETVAVIGVGGVGSSAIQLAKAFG--ASPIIAVDVRDEKLAKAKE----LGATHTVNAAKEDAVAAIREIT----GGR  255 (367)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC--CCeEEEEeCCHHHHHHHHH----hCCceEecCCcccHHHHHHHHh----CCC
Confidence            566777777654 5566666777653  45 8888888776665543    2332111111122222222221    135


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+|+|+-....   ...++.+++.|+++|.++.
T Consensus       256 ~~d~vld~vg~---~~~~~~~~~~l~~~G~~v~  285 (367)
T cd08263         256 GVDVVVEALGK---PETFKLALDVVRDGGRAVV  285 (367)
T ss_pred             CCCEEEEeCCC---HHHHHHHHHHHhcCCEEEE
Confidence            69988843221   1356778899999998875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=91.22  E-value=5  Score=32.38  Aligned_cols=82  Identities=16%  Similarity=0.178  Sum_probs=45.9

Q ss_pred             HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc---------------------chHHHHHHHHHhcCCCCcEE
Q 029803           17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR---------------------ETYEIGLPIIKKAGVDHKIN   74 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~---------------------~~~~~a~~~~~~~~~~~~~~   74 (187)
                      ..+..+|+-+|||. |...+..+.... -++++.+|.+.                     ...+.+++++...+-.-.++
T Consensus        21 ~L~~~~VlVvG~GglGs~va~~La~aG-vg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~   99 (339)
T PRK07688         21 KLREKHVLIIGAGALGTANAEMLVRAG-VGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE   99 (339)
T ss_pred             HhcCCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence            34667899999973 433333222222 46899999763                     23344556666544333455


Q ss_pred             EEEcchHH-HHHHHhhcccCCCceeEEEEeCC
Q 029803           75 FIESEALS-VLDQLLKYSENEGSFDYAFVDAD  105 (187)
Q Consensus        75 ~~~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~  105 (187)
                      .+..+... .+..+      -..||+|+...+
T Consensus       100 ~~~~~~~~~~~~~~------~~~~DlVid~~D  125 (339)
T PRK07688        100 AIVQDVTAEELEEL------VTGVDLIIDATD  125 (339)
T ss_pred             EEeccCCHHHHHHH------HcCCCEEEEcCC
Confidence            66555432 22333      257998876543

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=91.22  E-value=3.1  Score=32.77  Aligned_cols=87  Identities=14%  Similarity=0.093  Sum_probs=48.1

Q ss_pred             EEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803           22 KTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus        22 ~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      +||-+||| .|...+..+...+ -++++.+|.+.                   ...+.|.+.+...+-.-+++.+..+..
T Consensus         1 kVlVVGaGGlG~eilknLal~G-vg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~   79 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSG-FRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ   79 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence            47888875 3333333222222 46888888633                   234555666665554445666766665


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCCcccHHHHHH
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER  115 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~  115 (187)
                      +.-..+      -.+||+|+...+......++..
T Consensus        80 ~~~~~f------~~~fdvVi~alDn~~aR~~in~  107 (291)
T cd01488          80 DKDEEF------YRQFNIIICGLDSIEARRWING  107 (291)
T ss_pred             chhHHH------hcCCCEEEECCCCHHHHHHHHH
Confidence            443344      2679999876544333334444

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=91.19  E-value=0.93  Score=35.91  Aligned_cols=34  Identities=6%  Similarity=0.049  Sum_probs=26.7

Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..+|+||+..........++.+.+++++++.++.
T Consensus        71 ~~~D~vilavK~~~~~~~~~~l~~~~~~~~~iv~  104 (313)
T PRK06249         71 PPCDWVLVGLKTTANALLAPLIPQVAAPDAKVLL  104 (313)
T ss_pred             CCCCEEEEEecCCChHhHHHHHhhhcCCCCEEEE
Confidence            6799999976555667778888888999987664

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=91.14  E-value=3.8  Score=33.67  Aligned_cols=101  Identities=19%  Similarity=0.230  Sum_probs=53.6

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc---CC-----CCcEEEEE-cchHHHHHHHhhccc
Q 029803           22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---GV-----DHKINFIE-SEALSVLDQLLKYSE   92 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~-----~~~~~~~~-~d~~~~~~~~~~~~~   92 (187)
                      +|--||+  |+.+..+|..+..+..|+++|.+++.++..++.....   ++     ..+.++.. .+..+.         
T Consensus         2 kI~VIGl--GyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~---------   70 (388)
T PRK15057          2 KITISGT--GYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEA---------   70 (388)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhh---------
Confidence            3455565  5555555544433578999999999888776532100   00     00112211 111111         


Q ss_pred             CCCceeEEEEeCCCc-----------ccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           93 NEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                       -...|+|++.....           ......+.+.+ +++|.+++...+...|
T Consensus        71 -~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pg  122 (388)
T PRK15057         71 -YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVG  122 (388)
T ss_pred             -hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCc
Confidence             14578888764211           12334455556 6888888877666555

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=91.11  E-value=3.7  Score=32.50  Aligned_cols=98  Identities=14%  Similarity=0.100  Sum_probs=57.7

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ...++.+||-.|+| .|..+..+|+..  +.+++.++.+++..+.+++    .+....+.....+..+.+..+       
T Consensus       160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~-------  226 (333)
T cd08296         160 GAKPGDLVAVQGIGGLGHLAVQYAAKM--GFRTVAISRGSDKADLARK----LGAHHYIDTSKEDVAEALQEL-------  226 (333)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH----cCCcEEecCCCccHHHHHHhc-------
Confidence            45567788888853 445556667765  4689999988777666643    343211111122222222221       


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+|+++- ..  .....++.+++.|+++|.++.-
T Consensus       227 ~~~d~vi~-~~--g~~~~~~~~~~~l~~~G~~v~~  258 (333)
T cd08296         227 GGAKLILA-TA--PNAKAISALVGGLAPRGKLLIL  258 (333)
T ss_pred             CCCCEEEE-CC--CchHHHHHHHHHcccCCEEEEE
Confidence            35898874 21  1234677788999999988863

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=91.05  E-value=1.8  Score=33.72  Aligned_cols=85  Identities=14%  Similarity=0.066  Sum_probs=47.7

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803           22 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  100 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  100 (187)
                      +|.-||+|  ..+..++..+. .+.+|+++|.+++.++.+.+.    +.   +.....+. +   .       -...|+|
T Consensus         2 ~I~IIG~G--~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~----g~---~~~~~~~~-~---~-------~~~aDlV   61 (279)
T PRK07417          2 KIGIVGLG--LIGGSLGLDLRSLGHTVYGVSRRESTCERAIER----GL---VDEASTDL-S---L-------LKDCDLV   61 (279)
T ss_pred             eEEEEeec--HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC----CC---cccccCCH-h---H-------hcCCCEE
Confidence            46667765  34333443331 246899999998876665432    21   11111111 1   1       1457888


Q ss_pred             EEeCCCcccHHHHHHHHhccCCCeEE
Q 029803          101 FVDADKDNYCNYHERLMKLLKVGGIA  126 (187)
Q Consensus       101 ~~d~~~~~~~~~~~~~~~~L~~gG~l  126 (187)
                      |+..........++.+.+.++++.++
T Consensus        62 ilavp~~~~~~~~~~l~~~l~~~~ii   87 (279)
T PRK07417         62 ILALPIGLLLPPSEQLIPALPPEAIV   87 (279)
T ss_pred             EEcCCHHHHHHHHHHHHHhCCCCcEE
Confidence            88765555566677777777766444

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=91.04  E-value=0.81  Score=35.27  Aligned_cols=74  Identities=20%  Similarity=0.255  Sum_probs=45.1

Q ss_pred             HHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcccHHHHH
Q 029803           35 LLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE  114 (187)
Q Consensus        35 ~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~  114 (187)
                      ..+.+..+ ..+|+++|.+++.++.+.+.    |...   -...+ .+   .+       ..+|+|++..........++
T Consensus         3 ~aL~~~g~-~~~v~g~d~~~~~~~~a~~~----g~~~---~~~~~-~~---~~-------~~~DlvvlavP~~~~~~~l~   63 (258)
T PF02153_consen    3 LALRKAGP-DVEVYGYDRDPETLEAALEL----GIID---EASTD-IE---AV-------EDADLVVLAVPVSAIEDVLE   63 (258)
T ss_dssp             HHHHHTTT-TSEEEEE-SSHHHHHHHHHT----TSSS---EEESH-HH---HG-------GCCSEEEE-S-HHHHHHHHH
T ss_pred             HHHHhCCC-CeEEEEEeCCHHHHHHHHHC----CCee---eccCC-Hh---Hh-------cCCCEEEEcCCHHHHHHHHH
Confidence            34444433 68999999999987766543    4332   12222 22   22       46799998777777788888


Q ss_pred             HHHhccCCCeEEE
Q 029803          115 RLMKLLKVGGIAV  127 (187)
Q Consensus       115 ~~~~~L~~gG~lv  127 (187)
                      ++.+.+++|++++
T Consensus        64 ~~~~~~~~~~iv~   76 (258)
T PF02153_consen   64 EIAPYLKPGAIVT   76 (258)
T ss_dssp             HHHCGS-TTSEEE
T ss_pred             HhhhhcCCCcEEE
Confidence            8888888876554

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=91.01  E-value=0.72  Score=36.49  Aligned_cols=110  Identities=16%  Similarity=0.180  Sum_probs=64.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-------------------CCCEEEEEeCCc--chHHHHHHHHHhc------------
Q 029803           21 KKTIEIGVFTGYSLLLTALTIP-------------------EDGQITAIDVNR--ETYEIGLPIIKKA------------   67 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~-------------------~~~~v~~iD~~~--~~~~~a~~~~~~~------------   67 (187)
                      .+||-||.|.|.-.+.+|..+.                   +...++.+|+.+  ..+......+...            
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            6999999999987777776660                   124899999844  2222222222222            


Q ss_pred             CC--C--CcEEEEEcchHHHHH-HHhhcccCCCceeEEEEe--------CCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           68 GV--D--HKINFIESEALSVLD-QLLKYSENEGSFDYAFVD--------ADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        68 ~~--~--~~~~~~~~d~~~~~~-~~~~~~~~~~~~D~i~~d--------~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..  +  -+++|.+.|++.... .+... ......++|-+-        ........++..+-..++||.++++.|.
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~l-l~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS  243 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSL-LGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS  243 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHH-hccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence            00  1  136788888865322 11100 011245666321        1244566789999999999999888543

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=91.01  E-value=0.59  Score=37.16  Aligned_cols=77  Identities=19%  Similarity=0.336  Sum_probs=52.2

Q ss_pred             EEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH-HHHHHhhcccCCCceeEEE
Q 029803           24 IEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQLLKYSENEGSFDYAF  101 (187)
Q Consensus        24 LeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~D~i~  101 (187)
                      +|||+  |.+.++.+.... .+....++|++......|+.++.+++++..+.+++.+..+ .+...... ..+..||++.
T Consensus       107 iDIgt--gasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~-~~e~~ydFcM  183 (419)
T KOG2912|consen  107 IDIGT--GASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKE-ESEIIYDFCM  183 (419)
T ss_pred             eeccC--chhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhcc-CccceeeEEe
Confidence            57776  666666554332 1467889999999999999999999999889988887644 23322111 1123477776


Q ss_pred             Ee
Q 029803          102 VD  103 (187)
Q Consensus       102 ~d  103 (187)
                      +.
T Consensus       184 cN  185 (419)
T KOG2912|consen  184 CN  185 (419)
T ss_pred             cC
Confidence            65

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=90.98  E-value=2.1  Score=33.87  Aligned_cols=94  Identities=18%  Similarity=0.277  Sum_probs=56.4

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           19 NAKKTIEIGVFT-GYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        19 ~~~~vLeiG~g~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ++.+||-.|+|. |..+..+++..  +. ++++++.+++..+.+++    .+..   .++..+... +..+..   ....
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~--G~~~v~~~~~s~~~~~~~~~----~g~~---~vi~~~~~~-~~~~~~---~~~~  231 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRA--GAAEIVATDLADAPLAVARA----MGAD---ETVNLARDP-LAAYAA---DKGD  231 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----cCCC---EEEcCCchh-hhhhhc---cCCC
Confidence            677888888764 66777777765  34 78898888777665443    2322   122221111 112111   1245


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +|+++-...   ....++.+++.|+++|.++.
T Consensus       232 vd~vld~~g---~~~~~~~~~~~L~~~G~~v~  260 (339)
T cd08232         232 FDVVFEASG---APAALASALRVVRPGGTVVQ  260 (339)
T ss_pred             ccEEEECCC---CHHHHHHHHHHHhcCCEEEE
Confidence            998875322   12456788899999999885

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=90.95  E-value=3.3  Score=32.32  Aligned_cols=96  Identities=17%  Similarity=0.100  Sum_probs=54.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc--------CCC---------CcEEEEEcchHHH
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--------GVD---------HKINFIESEALSV   83 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------~~~---------~~~~~~~~d~~~~   83 (187)
                      ++|.-||+|.=..++....... +.+|+.+|.+++.++.+++.++..        ...         .+++. ..|..+.
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a   81 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEA   81 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHH
Confidence            5688888874333332222212 568999999999888887664321        111         12222 2232221


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCc--ccHHHHHHHHhccCCCeEEEE
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~~~~L~~gG~lv~  128 (187)
                                -...|+|+......  .....++++.+.++++.+|+.
T Consensus        82 ----------~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s  118 (287)
T PRK08293         82 ----------VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFAT  118 (287)
T ss_pred             ----------hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence                      14678888765322  345667777777877766544

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=90.82  E-value=4.6  Score=30.76  Aligned_cols=87  Identities=15%  Similarity=0.078  Sum_probs=46.3

Q ss_pred             EEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEEEcch
Q 029803           22 KTIEIGVFTGYSLLLTALTI--PEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~--~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      +||-+|+|  ..+.++++.+  ..-++++.+|.+.                   ...+.+.+++.+.+..-+++.+..+.
T Consensus         1 kVlvvG~G--GlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i   78 (234)
T cd01484           1 KVLLVGAG--GIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKV   78 (234)
T ss_pred             CEEEECCC--HHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccC
Confidence            47788875  3334433333  1146888888643                   22345556666555444566666665


Q ss_pred             H---HHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHH
Q 029803           81 L---SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL  116 (187)
Q Consensus        81 ~---~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~  116 (187)
                      .   +....+      -..||+|+...+......++.++
T Consensus        79 ~~~~~~~~~f------~~~~DvVi~a~Dn~~aR~~ln~~  111 (234)
T cd01484          79 GPEQDFNDTF------FEQFHIIVNALDNIIARRYVNGM  111 (234)
T ss_pred             ChhhhchHHH------HhCCCEEEECCCCHHHHHHHHHH
Confidence            2   222233      26799998765443334444433

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=90.78  E-value=4.8  Score=32.24  Aligned_cols=98  Identities=17%  Similarity=0.184  Sum_probs=55.4

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH---HHHHHHhhcccC
Q 029803           19 NAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL---SVLDQLLKYSEN   93 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~   93 (187)
                      ++.+||-.|+| .|..+..+|+..  +. ++++++.+++..+.++    ..+....+.....+..   ..+....    .
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~--G~~~v~~~~~~~~~~~~~~----~~g~~~vi~~~~~~~~~~~~~i~~~~----~  246 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLA--GARRVIVIDGSPERLELAR----EFGADATIDIDELPDPQRRAIVRDIT----G  246 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCeEEEEcCCHHHHHHHH----HcCCCeEEcCcccccHHHHHHHHHHh----C
Confidence            66788887753 344556667765  45 8999988777665553    2343221111111111   1122221    2


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...+|+++-....   ...+..+++.++++|.++.-
T Consensus       247 ~~~~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~  279 (361)
T cd08231         247 GRGADVVIEASGH---PAAVPEGLELLRRGGTYVLV  279 (361)
T ss_pred             CCCCcEEEECCCC---hHHHHHHHHHhccCCEEEEE
Confidence            3579988743211   34567788999999999864

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=90.75  E-value=4.4  Score=31.18  Aligned_cols=97  Identities=14%  Similarity=0.158  Sum_probs=59.6

Q ss_pred             HHHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc---hHHHHHHHhh
Q 029803           15 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLK   89 (187)
Q Consensus        15 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~   89 (187)
                      ....++.+||-.|+  +.|..+..+++..  +.++++++.+++..+.+++    .+..   .++..+   ..+.+..+. 
T Consensus       132 ~~~~~g~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~-  201 (320)
T cd05286         132 YPVKPGDTVLVHAAAGGVGLLLTQWAKAL--GATVIGTVSSEEKAELARA----AGAD---HVINYRDEDFVERVREIT-  201 (320)
T ss_pred             cCCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----CCCC---EEEeCCchhHHHHHHHHc-
Confidence            34556788998884  5677777788875  5788888888776665533    3432   222222   222222221 


Q ss_pred             cccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           90 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                         ....+|+++-...  .  .....+++.++++|.++.
T Consensus       202 ---~~~~~d~vl~~~~--~--~~~~~~~~~l~~~g~~v~  233 (320)
T cd05286         202 ---GGRGVDVVYDGVG--K--DTFEGSLDSLRPRGTLVS  233 (320)
T ss_pred             ---CCCCeeEEEECCC--c--HhHHHHHHhhccCcEEEE
Confidence               2356998884322  1  356677889999998875

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO)

Probab=90.75  E-value=0.8  Score=29.52  Aligned_cols=76  Identities=24%  Similarity=0.241  Sum_probs=40.5

Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCcc--ccCCC---CCCCCCcccchHHHHHHHHHHhhcCCC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGT--VAVPE---EQVPDHFRGSSRQAILDLNRSLADDPR  168 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (187)
                      +..+|++++|....-.++.+..+...++-||++++--..+...  ..++.   ....... ......++.|.+.+.++++
T Consensus         9 G~e~~~~i~d~~~g~~pnal~a~~gtv~gGGllill~p~~~~w~~~~d~~~~~~~~~~~~-~~~~~F~~rf~~~L~~~~~   87 (92)
T PF08351_consen    9 GQEFDLLIFDAFEGFDPNALAALAGTVRGGGLLILLLPPWESWPQLPDPFSRRLSVPPYT-DVTPRFIRRFIRSLQSDPG   87 (92)
T ss_dssp             T--BSSEEEE-SS---HHHHHHHHTTB-TT-EEEEEES-GGGTTTS-BGGGHHCC--SS--B--HHHHHHHHHHHCCSTT
T ss_pred             CCccCEEEEEccCCCCHHHHHHHhcceecCeEEEEEcCCHHHhhhcchHHHhccccCCCC-cccHHHHHHHHHHHHHCcC
Confidence            4689999999988788889999999999999998732221111  00000   0000011 1144568888888988887


Q ss_pred             eE
Q 029803          169 VQ  170 (187)
Q Consensus       169 ~~  170 (187)
                      +.
T Consensus        88 i~   89 (92)
T PF08351_consen   88 II   89 (92)
T ss_dssp             S-
T ss_pred             Cc
Confidence            64

; PDB: 2ZPA_B.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=90.71  E-value=5  Score=32.33  Aligned_cols=101  Identities=21%  Similarity=0.353  Sum_probs=57.6

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhccc
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSE   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~   92 (187)
                      +..++.+||-+|+| .|..+..+|+... ...+++++.+++..+.+++    .+....+.....  +..+.+..+.    
T Consensus       180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~l~~~~----  250 (365)
T cd05279         180 KVTPGSTCAVFGLGGVGLSVIMGCKAAG-ASRIIAVDINKDKFEKAKQ----LGATECINPRDQDKPIVEVLTEMT----  250 (365)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCeecccccccchHHHHHHHHh----
Confidence            34567788888753 3445555666653 2358888888877766643    243221222222  2222222221    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccC-CCeEEEEe
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLK-VGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~-~gG~lv~~  129 (187)
                       .+.+|+++- ..  .....+..+++.++ ++|.++.-
T Consensus       251 -~~~~d~vid-~~--g~~~~~~~~~~~l~~~~G~~v~~  284 (365)
T cd05279         251 -DGGVDYAFE-VI--GSADTLKQALDATRLGGGTSVVV  284 (365)
T ss_pred             -CCCCcEEEE-CC--CCHHHHHHHHHHhccCCCEEEEE
Confidence             256898873 32  12346677888999 99998864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=90.70  E-value=6.2  Score=30.21  Aligned_cols=83  Identities=16%  Similarity=0.157  Sum_probs=46.1

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEE
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI   76 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~   76 (187)
                      ..+..+|+-+|+| .|...+..+.... -++++.+|.+.                   ...+.+++++...+-.-+++.+
T Consensus        29 ~L~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~  107 (245)
T PRK05690         29 KLKAARVLVVGLGGLGCAASQYLAAAG-VGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI  107 (245)
T ss_pred             HhcCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            3467899999996 3444333333333 46888887533                   2334556666655433345555


Q ss_pred             EcchHH-HHHHHhhcccCCCceeEEEEeCCC
Q 029803           77 ESEALS-VLDQLLKYSENEGSFDYAFVDADK  106 (187)
Q Consensus        77 ~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~  106 (187)
                      .....+ ....+      -..||+|+...+.
T Consensus       108 ~~~i~~~~~~~~------~~~~DiVi~~~D~  132 (245)
T PRK05690        108 NARLDDDELAAL------IAGHDLVLDCTDN  132 (245)
T ss_pred             eccCCHHHHHHH------HhcCCEEEecCCC
Confidence            544332 22333      2579988865543

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=90.65  E-value=4.8  Score=32.86  Aligned_cols=82  Identities=16%  Similarity=0.191  Sum_probs=45.8

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCC-------------------cchHHHHHHHHHhcCCCCcEEEEE
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVN-------------------RETYEIGLPIIKKAGVDHKINFIE   77 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~   77 (187)
                      .+..+|+-+||| .|...+..+.... -++++.+|.+                   ....+.+.+.+...+-.-.++.+.
T Consensus       133 l~~~~VlvvG~GG~Gs~ia~~La~~G-vg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~  211 (376)
T PRK08762        133 LLEARVLLIGAGGLGSPAALYLAAAG-VGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ  211 (376)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            466789999997 3444333333333 4689999986                   344566666666544322344444


Q ss_pred             cchHH-HHHHHhhcccCCCceeEEEEeCCC
Q 029803           78 SEALS-VLDQLLKYSENEGSFDYAFVDADK  106 (187)
Q Consensus        78 ~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~  106 (187)
                      ....+ .+..+.      ..+|+|+...+.
T Consensus       212 ~~~~~~~~~~~~------~~~D~Vv~~~d~  235 (376)
T PRK08762        212 ERVTSDNVEALL------QDVDVVVDGADN  235 (376)
T ss_pred             ccCChHHHHHHH------hCCCEEEECCCC
Confidence            33322 222331      569988765443

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=90.39  E-value=4.4  Score=28.04  Aligned_cols=96  Identities=16%  Similarity=0.098  Sum_probs=51.7

Q ss_pred             EEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHH-HHhcCCCCcEEEEEcc-hHHHHHHHhhcccCCCceeE
Q 029803           23 TIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPI-IKKAGVDHKINFIESE-ALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        23 vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~-~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~~~~~D~   99 (187)
                      |+-+|+  |..+..+|..+ ..+..|+.+...+ .++..++. +.-........+.... .......       ..+||+
T Consensus         1 I~I~G~--GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~D~   70 (151)
T PF02558_consen    1 ILIIGA--GAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSAD-------AGPYDL   70 (151)
T ss_dssp             EEEEST--SHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHH-------HSTESE
T ss_pred             CEEECc--CHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhc-------cCCCcE
Confidence            345565  44555544444 1267899999876 55543322 0000001011111111 1001011       378999


Q ss_pred             EEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803          100 AFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus       100 i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ||+..........++.+.+.+.++..+++
T Consensus        71 viv~vKa~~~~~~l~~l~~~~~~~t~iv~   99 (151)
T PF02558_consen   71 VIVAVKAYQLEQALQSLKPYLDPNTTIVS   99 (151)
T ss_dssp             EEE-SSGGGHHHHHHHHCTGEETTEEEEE
T ss_pred             EEEEecccchHHHHHHHhhccCCCcEEEE
Confidence            99976666777888999999999976664

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=90.27  E-value=7.9  Score=30.70  Aligned_cols=99  Identities=14%  Similarity=0.140  Sum_probs=56.4

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      .++.+|+-.|+| .|..++.+++..  +.+ +++++-+++..+.+++    .+....+.....+..+.+..+.    ..+
T Consensus       160 ~~g~~vlI~~~g~vg~~a~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~l~~~~----~~~  229 (340)
T TIGR00692       160 ISGKSVLVTGAGPIGLMAIAVAKAS--GAYPVIVSDPNEYRLELAKK----MGATYVVNPFKEDVVKEVADLT----DGE  229 (340)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCcEEEcccccCHHHHHHHhc----CCC
Confidence            456677766654 455666677765  454 8888777665554443    2432112222233333333331    235


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+|+++-....   ...+..+++.|+++|.++.-
T Consensus       230 ~~d~vld~~g~---~~~~~~~~~~l~~~g~~v~~  260 (340)
T TIGR00692       230 GVDVFLEMSGA---PKALEQGLQAVTPGGRVSLL  260 (340)
T ss_pred             CCCEEEECCCC---HHHHHHHHHhhcCCCEEEEE
Confidence            68988753221   24567788999999988764

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=90.27  E-value=6.1  Score=31.28  Aligned_cols=100  Identities=20%  Similarity=0.256  Sum_probs=57.7

Q ss_pred             HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ...++.+||-.|+|. |..+..+|+..  +.+ +++++.+++..+.++    ..+....+...... .+.+....    .
T Consensus       156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~--G~~~v~~~~~~~~~~~~l~----~~g~~~~~~~~~~~-~~~~~~~~----~  224 (343)
T cd08236         156 GITLGDTVVVIGAGTIGLLAIQWLKIL--GAKRVIAVDIDDEKLAVAR----ELGADDTINPKEED-VEKVRELT----E  224 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCHHHHHHHH----HcCCCEEecCcccc-HHHHHHHh----C
Confidence            345667888888654 66777778765  344 888887776655443    23332111111112 22222221    1


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...+|+++-..   .....+..+++.|+++|.++.-
T Consensus       225 ~~~~d~vld~~---g~~~~~~~~~~~l~~~G~~v~~  257 (343)
T cd08236         225 GRGADLVIEAA---GSPATIEQALALARPGGKVVLV  257 (343)
T ss_pred             CCCCCEEEECC---CCHHHHHHHHHHhhcCCEEEEE
Confidence            24599887432   1234667788999999998764

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PLN02494 adenosylhomocysteinase

Probab=90.23  E-value=4.2  Score=34.32  Aligned_cols=96  Identities=14%  Similarity=0.086  Sum_probs=57.0

Q ss_pred             HHHHHHHH----cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803           10 LMAMLLRL----VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus        10 ll~~l~~~----~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      ++..+.+.    ..+++|+-+|+| .|......++.+  +.+|+.+|.++.....+..    .+.    .+.  +..+.+
T Consensus       240 ~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~----~G~----~vv--~leEal  307 (477)
T PLN02494        240 LPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALM----EGY----QVL--TLEDVV  307 (477)
T ss_pred             HHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHh----cCC----eec--cHHHHH
Confidence            34444443    457899999987 344445555554  5689999998865443322    122    111  222222


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                                ...|+|+......  .-.....++.||+|++|+--
T Consensus       308 ----------~~ADVVI~tTGt~--~vI~~e~L~~MK~GAiLiNv  340 (477)
T PLN02494        308 ----------SEADIFVTTTGNK--DIIMVDHMRKMKNNAIVCNI  340 (477)
T ss_pred             ----------hhCCEEEECCCCc--cchHHHHHhcCCCCCEEEEc
Confidence                      3579888732211  12336677899999999874

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=90.19  E-value=7.6  Score=33.06  Aligned_cols=117  Identities=15%  Similarity=0.158  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHHHc--CCCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEc
Q 029803            5 TIHGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIES   78 (187)
Q Consensus         5 ~~~~~ll~~l~~~~--~~~~vLeiG~g~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~   78 (187)
                      +.+..++..++...  +...+.|..||+|...........   ....+++-|..+.+...++.+..-.+.. +......+
T Consensus       201 ~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~  280 (501)
T TIGR00497       201 QDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINA  280 (501)
T ss_pred             HHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccC
Confidence            34445554444432  346899999999998766544332   1356899999999999999886555442 22333344


Q ss_pred             chHHHHHHHhhcccCCCceeEEEEeCCC----------------------------cccHHHHHHHHhccCCCeEE
Q 029803           79 EALSVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIA  126 (187)
Q Consensus        79 d~~~~~~~~~~~~~~~~~~D~i~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~l  126 (187)
                      |.+......     ...+||.|+.+...                            ..-..++..++..|++||..
T Consensus       281 dtl~~~d~~-----~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~  351 (501)
T TIGR00497       281 DTLTTKEWE-----NENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTA  351 (501)
T ss_pred             CcCCCcccc-----ccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeE
Confidence            443211110     12457777655310                            01123566777899998853

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=90.18  E-value=4.5  Score=32.88  Aligned_cols=102  Identities=14%  Similarity=0.109  Sum_probs=56.3

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhccc
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSE   92 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~   92 (187)
                      ..++.+||-.|+| .|..++.+|+... ..++++++.+++..+.+++    .+....+.....   +..+.+..+.    
T Consensus       201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G-~~~vi~~~~~~~~~~~~~~----~g~~~~v~~~~~~~~~~~~~v~~~~----  271 (384)
T cd08265         201 FRPGAYVVVYGAGPIGLAAIALAKAAG-ASKVIAFEISEERRNLAKE----MGADYVFNPTKMRDCLSGEKVMEVT----  271 (384)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCEEEcccccccccHHHHHHHhc----
Confidence            4456778777653 3344555666543 2379999887775544443    344221111111   2222233331    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+..+|+|+ +..- .....+..+++.|+++|.++.-
T Consensus       272 ~g~gvDvvl-d~~g-~~~~~~~~~~~~l~~~G~~v~~  306 (384)
T cd08265         272 KGWGADIQV-EAAG-APPATIPQMEKSIAINGKIVYI  306 (384)
T ss_pred             CCCCCCEEE-ECCC-CcHHHHHHHHHHHHcCCEEEEE
Confidence            235699777 4322 2245677888999999998864

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PLN02256 arogenate dehydrogenase

Probab=90.17  E-value=5.6  Score=31.54  Aligned_cols=97  Identities=15%  Similarity=0.025  Sum_probs=53.5

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      .-++...+..+..+|.-||+|  ..+..++..+. .+.+|+++|.++. .+.+    ...+.    .. ..+..+..   
T Consensus        25 ~~~~~~~~~~~~~kI~IIG~G--~mG~slA~~L~~~G~~V~~~d~~~~-~~~a----~~~gv----~~-~~~~~e~~---   89 (304)
T PLN02256         25 SRLQEELEKSRKLKIGIVGFG--NFGQFLAKTFVKQGHTVLATSRSDY-SDIA----AELGV----SF-FRDPDDFC---   89 (304)
T ss_pred             hHHhHhhccCCCCEEEEEeeC--HHHHHHHHHHHhCCCEEEEEECccH-HHHH----HHcCC----ee-eCCHHHHh---
Confidence            334555556677789999975  44444444442 1358999998763 2222    22332    11 22322221   


Q ss_pred             hhcccCCCceeEEEEeCCCcccHHHHHHH-HhccCCCeEE
Q 029803           88 LKYSENEGSFDYAFVDADKDNYCNYHERL-MKLLKVGGIA  126 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~~~~~~~~~~~-~~~L~~gG~l  126 (187)
                            ....|+|++..........++++ ...++++.++
T Consensus        90 ------~~~aDvVilavp~~~~~~vl~~l~~~~l~~~~iv  123 (304)
T PLN02256         90 ------EEHPDVVLLCTSILSTEAVLRSLPLQRLKRSTLF  123 (304)
T ss_pred             ------hCCCCEEEEecCHHHHHHHHHhhhhhccCCCCEE
Confidence                  13478888876555566666666 4567776543

>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component

Probab=90.13  E-value=2.7  Score=27.16  Aligned_cols=71  Identities=11%  Similarity=0.017  Sum_probs=41.7

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  100 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  100 (187)
                      ++|| +-||+|.++..++..                   .++.++..+++  +++...+..+.-..       ...+|+|
T Consensus         4 ~~IL-l~C~~G~sSS~l~~k-------------------~~~~~~~~gi~--~~v~a~~~~~~~~~-------~~~~Dvi   54 (95)
T TIGR00853         4 TNIL-LLCAAGMSTSLLVNK-------------------MNKAAEEYGVP--VKIAAGSYGAAGEK-------LDDADVV   54 (95)
T ss_pred             cEEE-EECCCchhHHHHHHH-------------------HHHHHHHCCCc--EEEEEecHHHHHhh-------cCCCCEE
Confidence            4555 567888776656543                   24445555654  77777777664332       2578999


Q ss_pred             EEeCCCcccHHHHHHHHhccCCC
Q 029803          101 FVDADKDNYCNYHERLMKLLKVG  123 (187)
Q Consensus       101 ~~d~~~~~~~~~~~~~~~~L~~g  123 (187)
                      ++.+.   ....++++.+...+-
T Consensus        55 ll~pq---i~~~~~~i~~~~~~~   74 (95)
T TIGR00853        55 LLAPQ---VAYMLPDLKKETDKK   74 (95)
T ss_pred             EECch---HHHHHHHHHHHhhhc
Confidence            98653   333445555555443

Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=89.94  E-value=0.84  Score=34.46  Aligned_cols=60  Identities=12%  Similarity=-0.019  Sum_probs=47.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      ....|.|||.|.|..+..+..+-  ..++..+|.++.++.-.+...+.+.  .+..++++|++.
T Consensus        50 ~~~~v~eIgPgpggitR~il~a~--~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR  109 (326)
T KOG0821|consen   50 TNAYVYEIGPGPGGITRSILNAD--VARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR  109 (326)
T ss_pred             ccceeEEecCCCCchhHHHHhcc--hhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence            34579999999999999998763  4689999999998887776655333  468889999864

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=89.83  E-value=7.4  Score=32.10  Aligned_cols=123  Identities=14%  Similarity=0.103  Sum_probs=69.4

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-cchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      +|.+.++-..++.......++-.++|+......+...+.++.+|+..+.. ........+.+...+.  .+.++..+-.+
T Consensus        69 ~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~--~v~~vd~~d~~  146 (403)
T PRK07810         69 NPTVSMFEERLRLIEGAEACFATASGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGV--ETVFVDGEDLS  146 (403)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCc--EEEEECCCCHH
Confidence            56677788888888888889998888877666554445556777766532 2333444445555553  34444333223


Q ss_pred             HHHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCe-EEEEeCCCC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTLW  133 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~~  133 (187)
                      .+....     .+...+|++...  +......++.+.++.+..| .+++|+++.
T Consensus       147 ~l~~ai-----~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a  195 (403)
T PRK07810        147 QWEEAL-----SVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFA  195 (403)
T ss_pred             HHHHhc-----CcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCC
Confidence            233321     234678887532  2222223555555555545 555666643

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=89.72  E-value=7.7  Score=31.86  Aligned_cols=111  Identities=14%  Similarity=0.126  Sum_probs=71.9

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHH-------HHhcCC-CCcEEEEEcchHH--HHH
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI-------IKKAGV-DHKINFIESEALS--VLD   85 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~-------~~~~~~-~~~~~~~~~d~~~--~~~   85 (187)
                      +..+.....|+|+|.|......+.... ...=+++++.....+.+..+       .+-.|. .+.++.++++..+  ...
T Consensus       189 ~~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~  267 (419)
T KOG3924|consen  189 KLGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVT  267 (419)
T ss_pred             ccCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHH
Confidence            466778899999999999888776544 44557777665544433221       222333 3557888888754  233


Q ss_pred             HHhhcccCCCceeEEEEeCCC--cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           86 QLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .+      ....++||+....  +...--+++++..+++|-.|+-...+.
T Consensus       268 eI------~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~~~L~  311 (419)
T KOG3924|consen  268 EI------QTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISSKPLV  311 (419)
T ss_pred             HH------hhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecccccc
Confidence            33      3567899987432  222233557889999999998876664

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=89.69  E-value=5.9  Score=31.23  Aligned_cols=95  Identities=20%  Similarity=0.108  Sum_probs=52.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHh-cCC--C--------CcEEEEEcchHHHHHHH
Q 029803           20 AKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKK-AGV--D--------HKINFIESEALSVLDQL   87 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~-~~~--~--------~~~~~~~~d~~~~~~~~   87 (187)
                      -++|.-||+|.=.  ..++..+ ..+.+|+.+|.+++.++.+++.+.. .+.  .        .++++ ..+..+.    
T Consensus         4 ~~~I~vIGaG~mG--~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~----   76 (311)
T PRK06130          4 IQNLAIIGAGTMG--SGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA----   76 (311)
T ss_pred             ccEEEEECCCHHH--HHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH----
Confidence            3578888886432  2222222 1256899999999988887765322 111  0        11111 1222211    


Q ss_pred             hhcccCCCceeEEEEeCCCc--ccHHHHHHHHhccCCCeEEE
Q 029803           88 LKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~~~~L~~gG~lv  127 (187)
                            -...|+|+......  .....+..+.+.++++.+++
T Consensus        77 ------~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~  112 (311)
T PRK06130         77 ------VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFA  112 (311)
T ss_pred             ------hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEE
Confidence                  14679998865332  24556777767676655544

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=89.68  E-value=2  Score=33.60  Aligned_cols=34  Identities=15%  Similarity=0.167  Sum_probs=26.6

Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..+|+||+..........++.+.+.+.++.+++.
T Consensus        67 ~~~d~vilavk~~~~~~~~~~l~~~~~~~~~ii~  100 (305)
T PRK12921         67 GPFDLVILAVKAYQLDAAIPDLKPLVGEDTVIIP  100 (305)
T ss_pred             CCCCEEEEEecccCHHHHHHHHHhhcCCCCEEEE
Confidence            6799999977666677788888888888876654

>PRK05939 hypothetical protein; Provisional

Probab=89.67  E-value=10  Score=31.20  Aligned_cols=123  Identities=11%  Similarity=0.092  Sum_probs=67.8

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      .+|.+..+=+.++........+-..+|++.....+...+.++.+|+..+..-......-..+...|.  .+.++..+-.+
T Consensus        45 g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~--~v~~v~~~d~e  122 (397)
T PRK05939         45 GTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGV--EVTMVDATDVQ  122 (397)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCC--EEEEECCCCHH
Confidence            3567777777888888888888888877666555544556577888876532211111123444443  24444332223


Q ss_pred             HHHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeE-EEEeCCC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGI-AVYDNTL  132 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~-lv~~~~~  132 (187)
                      .+....     ..+-.+|++...  +......++.+.++.+..|. +++|++.
T Consensus       123 ~l~~~l-----~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~  170 (397)
T PRK05939        123 NVAAAI-----RPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTM  170 (397)
T ss_pred             HHHHhC-----CCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCc
Confidence            333321     245667877642  22233456667676666554 4555543

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=89.52  E-value=3.6  Score=29.84  Aligned_cols=94  Identities=9%  Similarity=0.111  Sum_probs=49.6

Q ss_pred             HHHHHHHHH-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC--CcEEEEEcchHH--H
Q 029803            9 QLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALS--V   83 (187)
Q Consensus         9 ~ll~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~--~   83 (187)
                      ..+..++.. .....|+.+|||.-.....+....+ +.+++-+|. |+.++.-++.++..+..  .+.+++..|..+  .
T Consensus        67 ~~v~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~-~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~  144 (183)
T PF04072_consen   67 DAVREFIAKHPGARQVVNLGAGLDTRAYRLDNPAG-GVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSW  144 (183)
T ss_dssp             HHHHHHHHHHTTESEEEEET-TT--HHHHHHHTTT-TEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHH
T ss_pred             HHHHHhhccCCCCcEEEEcCCCCCchHHHhhcccc-ceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhh
Confidence            334444443 3345899999977766666665433 567777776 66677666666654321  234568888763  4


Q ss_pred             HHHHhhcccCCCceeEEEEeC
Q 029803           84 LDQLLKYSENEGSFDYAFVDA  104 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~  104 (187)
                      ...+.+.+......-++++.+
T Consensus       145 ~~~L~~~g~~~~~ptl~i~Eg  165 (183)
T PF04072_consen  145 IDALPKAGFDPDRPTLFIAEG  165 (183)
T ss_dssp             HHHHHHCTT-TTSEEEEEEES
T ss_pred             HHHHHHhCCCCCCCeEEEEcc
Confidence            444443322234445555554

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=89.51  E-value=5.5  Score=31.14  Aligned_cols=99  Identities=17%  Similarity=0.181  Sum_probs=56.9

Q ss_pred             HcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           17 LVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ..++.+++-.|.+  .|..+..++...  +.+++.++.+++..+.+++    .+....+.....+..+.+....    ..
T Consensus       164 ~~~~~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~----~~  233 (342)
T cd08266         164 LRPGETVLVHGAGSGVGSAAIQIAKLF--GATVIATAGSEDKLERAKE----LGADYVIDYRKEDFVREVRELT----GK  233 (342)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCeEEecCChHHHHHHHHHh----CC
Confidence            4567788888864  566666666654  5788888888776655532    2322112111112222222221    13


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+|.++-....    ..++.+++.++++|.++.-
T Consensus       234 ~~~d~~i~~~g~----~~~~~~~~~l~~~G~~v~~  264 (342)
T cd08266         234 RGVDVVVEHVGA----ATWEKSLKSLARGGRLVTC  264 (342)
T ss_pred             CCCcEEEECCcH----HHHHHHHHHhhcCCEEEEE
Confidence            468988754322    3467778899999988763

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=89.50  E-value=4.5  Score=31.59  Aligned_cols=93  Identities=13%  Similarity=0.036  Sum_probs=52.2

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCC---CcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           22 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      +|.-||+|.  .+..++..+. .+.+|+.++.+++.++..++.    +..   ..... ..........       ...+
T Consensus         2 ~I~IiG~G~--~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~----g~~~~~~~~~~-~~~~~~~~~~-------~~~~   67 (304)
T PRK06522          2 KIAILGAGA--IGGLFGAALAQAGHDVTLVARRGAHLDALNEN----GLRLEDGEITV-PVLAADDPAE-------LGPQ   67 (304)
T ss_pred             EEEEECCCH--HHHHHHHHHHhCCCeEEEEECChHHHHHHHHc----CCcccCCceee-cccCCCChhH-------cCCC
Confidence            578888853  3333333332 246899999877665544432    221   11110 0000010111       2679


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+|++..........++.+.+.+.++..+++
T Consensus        68 d~vila~k~~~~~~~~~~l~~~l~~~~~iv~   98 (304)
T PRK06522         68 DLVILAVKAYQLPAALPSLAPLLGPDTPVLF   98 (304)
T ss_pred             CEEEEecccccHHHHHHHHhhhcCCCCEEEE
Confidence            9999987666677788888888888766654

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=89.43  E-value=1.4  Score=38.36  Aligned_cols=93  Identities=9%  Similarity=-0.033  Sum_probs=57.7

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029803           21 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   97 (187)
                      .+|+-+  |.|..+..+++.+. .+..++.+|.+++.++.+++.    +    ..++.||+.+  .+.+.     .-++.
T Consensus       401 ~~vII~--G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~a-----gi~~A  465 (601)
T PRK03659        401 PQVIIV--GFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY----G----YKVYYGDATQLELLRAA-----GAEKA  465 (601)
T ss_pred             CCEEEe--cCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC----C----CeEEEeeCCCHHHHHhc-----CCccC
Confidence            356664  45777777776553 256899999999988877642    2    5688888865  34432     23578


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |.+++..+........-...+.+.|+..++.
T Consensus       466 ~~vv~~~~d~~~n~~i~~~~r~~~p~~~Iia  496 (601)
T PRK03659        466 EAIVITCNEPEDTMKIVELCQQHFPHLHILA  496 (601)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHHCCCCeEEE
Confidence            8887754333222222233456677776665

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=89.41  E-value=5.7  Score=31.49  Aligned_cols=101  Identities=15%  Similarity=0.180  Sum_probs=57.1

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++.+|+-.|+|. |..+..+|+... ..++++++.+++..+.+++    .+....+.....+..+.+..+.    ..+.
T Consensus       162 ~~g~~vlV~~~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~----lg~~~~~~~~~~~~~~~~~~~~----~~~~  232 (341)
T PRK05396        162 LVGEDVLITGAGPIGIMAAAVAKHVG-ARHVVITDVNEYRLELARK----MGATRAVNVAKEDLRDVMAELG----MTEG  232 (341)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHHHhc----CCCC
Confidence            3567777777643 566677777753 2368888777766555443    3432111111222223333331    2356


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|+||-...   ....+..+.+.|+++|.++.-.
T Consensus       233 ~d~v~d~~g---~~~~~~~~~~~l~~~G~~v~~g  263 (341)
T PRK05396        233 FDVGLEMSG---APSAFRQMLDNMNHGGRIAMLG  263 (341)
T ss_pred             CCEEEECCC---CHHHHHHHHHHHhcCCEEEEEe
Confidence            898775221   2346677889999999988753

>PRK10083 putative oxidoreductase; Provisional

Probab=89.34  E-value=6.7  Score=30.98  Aligned_cols=100  Identities=13%  Similarity=0.018  Sum_probs=54.2

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhh-CCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALT-IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~-~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      +..++.+|+-.|+| .|..++.+|+. .. ...+++++.+++..+.+++    .+...-+.....+..+.+..   .   
T Consensus       157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G-~~~v~~~~~~~~~~~~~~~----~Ga~~~i~~~~~~~~~~~~~---~---  225 (339)
T PRK10083        157 GPTEQDVALIYGAGPVGLTIVQVLKGVYN-VKAVIVADRIDERLALAKE----SGADWVINNAQEPLGEALEE---K---  225 (339)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHH----hCCcEEecCccccHHHHHhc---C---
Confidence            34567788888853 33444555554 23 2358888988877766654    24321111111222222211   1   


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...+|++|- ...  ....+..+++.|+++|.++.-
T Consensus       226 g~~~d~vid-~~g--~~~~~~~~~~~l~~~G~~v~~  258 (339)
T PRK10083        226 GIKPTLIID-AAC--HPSILEEAVTLASPAARIVLM  258 (339)
T ss_pred             CCCCCEEEE-CCC--CHHHHHHHHHHhhcCCEEEEE
Confidence            223565553 321  134577788999999998864

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=89.32  E-value=8.1  Score=31.34  Aligned_cols=83  Identities=19%  Similarity=0.046  Sum_probs=47.1

Q ss_pred             HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEE
Q 029803           17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI   76 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~   76 (187)
                      ..+..+||-+|||. |...+..+.... -++++.+|.+.                   ...+.+.+++...+-.-+++.+
T Consensus        25 ~L~~~~VlivG~GGlGs~~a~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~  103 (355)
T PRK05597         25 SLFDAKVAVIGAGGLGSPALLYLAGAG-VGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS  103 (355)
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence            34668999999974 443333333323 46888888654                   3446666777765544445555


Q ss_pred             EcchHH-HHHHHhhcccCCCceeEEEEeCCC
Q 029803           77 ESEALS-VLDQLLKYSENEGSFDYAFVDADK  106 (187)
Q Consensus        77 ~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~  106 (187)
                      ...... ....+      -..||+|+...+.
T Consensus       104 ~~~i~~~~~~~~------~~~~DvVvd~~d~  128 (355)
T PRK05597        104 VRRLTWSNALDE------LRDADVILDGSDN  128 (355)
T ss_pred             EeecCHHHHHHH------HhCCCEEEECCCC
Confidence            444322 12222      2579988765443

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=89.19  E-value=8.3  Score=29.44  Aligned_cols=91  Identities=16%  Similarity=0.124  Sum_probs=49.8

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEE
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI   76 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~   76 (187)
                      ..+..+|+-+||| .|...+..+.... -++++.+|.+.                   ...+.+++.+...+..-+++.+
T Consensus        21 ~L~~~~VlvvG~GglGs~va~~La~~G-vg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~   99 (240)
T TIGR02355        21 ALKASRVLIVGLGGLGCAASQYLAAAG-VGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI   99 (240)
T ss_pred             HHhCCcEEEECcCHHHHHHHHHHHHcC-CCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            3456789999987 4554444444333 46888877533                   2235556666655533345555


Q ss_pred             EcchHH-HHHHHhhcccCCCceeEEEEeCCCcccHHHHH
Q 029803           77 ESEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNYHE  114 (187)
Q Consensus        77 ~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~  114 (187)
                      .....+ ....+      -..+|+|+...+.......+.
T Consensus       100 ~~~i~~~~~~~~------~~~~DlVvd~~D~~~~r~~ln  132 (240)
T TIGR02355       100 NAKLDDAELAAL------IAEHDIVVDCTDNVEVRNQLN  132 (240)
T ss_pred             eccCCHHHHHHH------hhcCCEEEEcCCCHHHHHHHH
Confidence            443322 23333      257998886554433333333

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=89.12  E-value=7.5  Score=30.42  Aligned_cols=100  Identities=11%  Similarity=0.047  Sum_probs=58.9

Q ss_pred             HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc-hHHHHHHHhhccc
Q 029803           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSE   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~   92 (187)
                      ...++.+|+-.|+  +.|..+..+|+..  +.+++.+..+++..+.+++    .+....+.....+ ..+.+....    
T Consensus       137 ~~~~~~~vlI~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----  206 (334)
T PTZ00354        137 DVKKGQSVLIHAGASGVGTAAAQLAEKY--GAATIITTSSEEKVDFCKK----LAAIILIRYPDEEGFAPKVKKLT----  206 (334)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCcEEEecCChhHHHHHHHHHh----
Confidence            3456678888874  5777778888775  4666677777776666643    3432111111112 222223221    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ....+|+++-...    ...++.+++.|+++|.++.-
T Consensus       207 ~~~~~d~~i~~~~----~~~~~~~~~~l~~~g~~i~~  239 (334)
T PTZ00354        207 GEKGVNLVLDCVG----GSYLSETAEVLAVDGKWIVY  239 (334)
T ss_pred             CCCCceEEEECCc----hHHHHHHHHHhccCCeEEEE
Confidence            1356898884321    35667788999999988753

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=89.11  E-value=5.1  Score=32.18  Aligned_cols=101  Identities=24%  Similarity=0.327  Sum_probs=57.5

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ...++.+||-.|+| .|..+..+++... ..+|++++.+++..+.+++    .+....+.....+....+..+.    ..
T Consensus       179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G-~~~Vi~~~~~~~~~~~~~~----~g~~~vv~~~~~~~~~~l~~~~----~~  249 (363)
T cd08279         179 RVRPGDTVAVIGCGGVGLNAIQGARIAG-ASRIIAVDPVPEKLELARR----FGATHTVNASEDDAVEAVRDLT----DG  249 (363)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEEcCCHHHHHHHHH----hCCeEEeCCCCccHHHHHHHHc----CC
Confidence            34567788888764 4667777777653 2248888887776655532    3432111111122222233321    13


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..+|+++-....   ...++.+++.|+++|.++.
T Consensus       250 ~~vd~vld~~~~---~~~~~~~~~~l~~~G~~v~  280 (363)
T cd08279         250 RGADYAFEAVGR---AATIRQALAMTRKGGTAVV  280 (363)
T ss_pred             CCCCEEEEcCCC---hHHHHHHHHHhhcCCeEEE
Confidence            569977642221   2456778899999998875

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=89.10  E-value=7.8  Score=28.98  Aligned_cols=96  Identities=11%  Similarity=0.031  Sum_probs=50.6

Q ss_pred             HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc------------------chHHHHHHHHHhcCCCCcEEEEE
Q 029803           17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR------------------ETYEIGLPIIKKAGVDHKINFIE   77 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~------------------~~~~~a~~~~~~~~~~~~~~~~~   77 (187)
                      ..+..+|+-+|||. |...+..+.... -++++.+|.+.                  ...+.+.+++...+..-+++.+.
T Consensus        25 ~L~~~~V~ViG~GglGs~ia~~La~~G-vg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~  103 (212)
T PRK08644         25 KLKKAKVGIAGAGGLGSNIAVALARSG-VGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHN  103 (212)
T ss_pred             HHhCCCEEEECcCHHHHHHHHHHHHcC-CCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence            44677899999873 443333333323 46888888762                  23455566666544333455554


Q ss_pred             cchHH-HHHHHhhcccCCCceeEEEEeCCCccc-HHHHHHHHhc
Q 029803           78 SEALS-VLDQLLKYSENEGSFDYAFVDADKDNY-CNYHERLMKL  119 (187)
Q Consensus        78 ~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~~~~-~~~~~~~~~~  119 (187)
                      ....+ ....+      -..+|+|+...+.... ....+.+.+.
T Consensus       104 ~~i~~~~~~~~------~~~~DvVI~a~D~~~~r~~l~~~~~~~  141 (212)
T PRK08644        104 EKIDEDNIEEL------FKDCDIVVEAFDNAETKAMLVETVLEH  141 (212)
T ss_pred             eecCHHHHHHH------HcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence            44332 22233      2579988854332222 2334444444

>TIGR00936 ahcY adenosylhomocysteinase

Probab=89.10  E-value=6.5  Score=32.56  Aligned_cols=87  Identities=11%  Similarity=0.060  Sum_probs=53.8

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..+++|+-+|+|. |......++.+  +.+|+.+|.+|.....+..    .+.    ++.  +..+.   +       ..
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~----~G~----~v~--~leea---l-------~~  250 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAM----DGF----RVM--TMEEA---A-------KI  250 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHh----cCC----EeC--CHHHH---H-------hc
Confidence            4688999999874 55555555554  5799999998865433332    222    221  22222   1       35


Q ss_pred             eeEEEEeCCCcccHHHHH-HHHhccCCCeEEEEe
Q 029803           97 FDYAFVDADKDNYCNYHE-RLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~-~~~~~L~~gG~lv~~  129 (187)
                      .|+++...   .....++ .....+|+|++++.-
T Consensus       251 aDVVItaT---G~~~vI~~~~~~~mK~GailiN~  281 (406)
T TIGR00936       251 GDIFITAT---GNKDVIRGEHFENMKDGAIVANI  281 (406)
T ss_pred             CCEEEECC---CCHHHHHHHHHhcCCCCcEEEEE
Confidence            69887643   2344444 467899999998874

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=89.07  E-value=5.4  Score=30.47  Aligned_cols=94  Identities=13%  Similarity=0.138  Sum_probs=57.3

Q ss_pred             HHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .+..++.++|-.|+|. |..++.+|+...  .+ +++++.+++..+.+++.    +..+.+  .... ....        
T Consensus        93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g--~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~~-~~~~--------  155 (277)
T cd08255          93 AEPRLGERVAVVGLGLVGLLAAQLAKAAG--AREVVGVDPDAARRELAEAL----GPADPV--AADT-ADEI--------  155 (277)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CCcEEEECCCHHHHHHHHHc----CCCccc--cccc-hhhh--------
Confidence            3455678888888764 667777777764  45 99999888877655542    311111  1110 0110        


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ....+|+++-....   ...++..++.|+++|.++.
T Consensus       156 ~~~~~d~vl~~~~~---~~~~~~~~~~l~~~g~~~~  188 (277)
T cd08255         156 GGRGADVVIEASGS---PSALETALRLLRDRGRVVL  188 (277)
T ss_pred             cCCCCCEEEEccCC---hHHHHHHHHHhcCCcEEEE
Confidence            13579988753222   2356777889999998875

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=89.06  E-value=9.2  Score=29.78  Aligned_cols=100  Identities=12%  Similarity=0.101  Sum_probs=59.3

Q ss_pred             HHHcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           15 LRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .+..++.+|+-.|  .+.|..+..+|+..  +.++++++.+++..+.+++    .+....+.....+..+.+....    
T Consensus       138 ~~~~~~~~vlI~g~~~~~g~~~~~la~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----  207 (324)
T cd08244         138 ATLTPGDVVLVTAAAGGLGSLLVQLAKAA--GATVVGAAGGPAKTALVRA----LGADVAVDYTRPDWPDQVREAL----  207 (324)
T ss_pred             cCCCCCCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEecCCccHHHHHHHHc----
Confidence            3445677888887  45677777888875  5789999888877665533    3432111111122222222221    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ....+|+++-....    ...+.+++.|+++|.++.
T Consensus       208 ~~~~~d~vl~~~g~----~~~~~~~~~l~~~g~~v~  239 (324)
T cd08244         208 GGGGVTVVLDGVGG----AIGRAALALLAPGGRFLT  239 (324)
T ss_pred             CCCCceEEEECCCh----HhHHHHHHHhccCcEEEE
Confidence            23469988743221    234777899999998885

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=88.97  E-value=1.2  Score=35.32  Aligned_cols=35  Identities=17%  Similarity=0.188  Sum_probs=29.1

Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ...+|+|++....-+....++.+.+.++++..+++
T Consensus        65 ~~~~Dlviv~vKa~q~~~al~~l~~~~~~~t~vl~   99 (307)
T COG1893          65 LGPADLVIVTVKAYQLEEALPSLAPLLGPNTVVLF   99 (307)
T ss_pred             cCCCCEEEEEeccccHHHHHHHhhhcCCCCcEEEE
Confidence            35899999987777778889999999999986654

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=88.92  E-value=5.6  Score=31.16  Aligned_cols=98  Identities=16%  Similarity=0.171  Sum_probs=57.9

Q ss_pred             HcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           17 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ..++.+||-.|+  +.|..+..+++..  +.++++++.+++..+.+++.   .+....+.....+..+.+....     .
T Consensus       143 ~~~~~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~v~~~~-----~  212 (329)
T cd05288         143 PKPGETVVVSAAAGAVGSVVGQIAKLL--GARVVGIAGSDEKCRWLVEE---LGFDAAINYKTPDLAEALKEAA-----P  212 (329)
T ss_pred             CCCCCEEEEecCcchHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhh---cCCceEEecCChhHHHHHHHhc-----c
Confidence            445678888873  4677777788774  56899998887766655543   2332111111112222222221     2


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..+|+++ +...   ...++.+++.++++|.++.
T Consensus       213 ~~~d~vi-~~~g---~~~~~~~~~~l~~~G~~v~  242 (329)
T cd05288         213 DGIDVYF-DNVG---GEILDAALTLLNKGGRIAL  242 (329)
T ss_pred             CCceEEE-Ecch---HHHHHHHHHhcCCCceEEE
Confidence            4689777 3321   2367778899999998875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd05281 TDH Threonine dehydrogenase

Probab=88.89  E-value=10  Score=30.07  Aligned_cols=98  Identities=20%  Similarity=0.171  Sum_probs=54.7

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           18 VNAKKTIEIGVFT-GYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      .++.+||-.|+|. |..++.+++..  +. ++++++-+++..+.+++    .+....+.....+.. .+..+.    ..+
T Consensus       162 ~~g~~vlV~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~-~~~~~~----~~~  230 (341)
T cd05281         162 VSGKSVLITGCGPIGLMAIAVAKAA--GASLVIASDPNPYRLELAKK----MGADVVINPREEDVV-EVKSVT----DGT  230 (341)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHH-HHHHHc----CCC
Confidence            4567777766542 55666777765  34 68888766655554443    343211111122222 222221    235


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+|+++-...   .......+++.|+++|.++.-
T Consensus       231 ~vd~vld~~g---~~~~~~~~~~~l~~~G~~v~~  261 (341)
T cd05281         231 GVDVVLEMSG---NPKAIEQGLKALTPGGRVSIL  261 (341)
T ss_pred             CCCEEEECCC---CHHHHHHHHHHhccCCEEEEE
Confidence            7998875322   234567778999999998763

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=88.88  E-value=9.3  Score=29.58  Aligned_cols=97  Identities=19%  Similarity=0.194  Sum_probs=60.1

Q ss_pred             HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ...++.+||-.|+  +.|..+..+|+..  +.+++++..+++..+.++    ..+... +-....+..+.+..+      
T Consensus       139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~----~~g~~~-~~~~~~~~~~~i~~~------  205 (320)
T cd08243         139 GLQPGDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSPERAALLK----ELGADE-VVIDDGAIAEQLRAA------  205 (320)
T ss_pred             CCCCCCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHH----hcCCcE-EEecCccHHHHHHHh------
Confidence            3456788888885  5777888888875  578888888877655553    234321 211122222222222      


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...+|+++-.. .   ...++.+++.|+++|.++.-
T Consensus       206 ~~~~d~vl~~~-~---~~~~~~~~~~l~~~g~~v~~  237 (320)
T cd08243         206 PGGFDKVLELV-G---TATLKDSLRHLRPGGIVCMT  237 (320)
T ss_pred             CCCceEEEECC-C---hHHHHHHHHHhccCCEEEEE
Confidence            25699887422 2   24577788999999998764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PRK05967 cystathionine beta-lyase; Provisional

Probab=88.82  E-value=12  Score=30.86  Aligned_cols=122  Identities=12%  Similarity=0.071  Sum_probs=71.8

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcch-HHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRET-YEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~-~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      +|....+-+.++........+-+.+|++.....+...+.++.+|+..+..-.. ....++.++..|.  .++++..+..+
T Consensus        63 nPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi--~v~~vd~~~~e  140 (395)
T PRK05967         63 TPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGV--EVEYYDPEIGA  140 (395)
T ss_pred             ChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCe--EEEEeCCCCHH
Confidence            45555666666665556667777888777666665666667888887654322 2234445555554  35665443334


Q ss_pred             HHHHHhhcccCCCceeEEEEeC--CCcccHHHHHHHHhccCCCeE-EEEeCCC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGI-AVYDNTL  132 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~--~~~~~~~~~~~~~~~L~~gG~-lv~~~~~  132 (187)
                      .+....     .++..+|++..  ++......++.+.++.+..|. +++|+++
T Consensus       141 ~l~~al-----~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~  188 (395)
T PRK05967        141 GIAKLM-----RPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTW  188 (395)
T ss_pred             HHHHhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCc
Confidence            344332     24567888874  333345567777777776654 5555554

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=88.78  E-value=8.6  Score=30.49  Aligned_cols=99  Identities=16%  Similarity=0.197  Sum_probs=58.1

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~   93 (187)
                      ...++.+|+-.|+| .|..+..+|+..  +.++++++.+++..+.+++    .+....+.... .+....+..+.     
T Consensus       162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~--G~~vi~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~-----  230 (345)
T cd08260         162 RVKPGEWVAVHGCGGVGLSAVMIASAL--GARVIAVDIDDDKLELARE----LGAVATVNASEVEDVAAAVRDLT-----  230 (345)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHH----hCCCEEEccccchhHHHHHHHHh-----
Confidence            34566788888853 445566677764  5789999888877666643    34321111111 22222222221     


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+.+|+++-...   ....+..+++.|+++|.++.
T Consensus       231 ~~~~d~vi~~~g---~~~~~~~~~~~l~~~g~~i~  262 (345)
T cd08260         231 GGGAHVSVDALG---IPETCRNSVASLRKRGRHVQ  262 (345)
T ss_pred             CCCCCEEEEcCC---CHHHHHHHHHHhhcCCEEEE
Confidence            227998874321   13456778899999998875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=88.66  E-value=9.7  Score=30.09  Aligned_cols=101  Identities=23%  Similarity=0.248  Sum_probs=61.0

Q ss_pred             HHcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ...++.+||-.|++  .|..+..+++..  +.+++.+..+++..+.+++    .+....+.....+..+.+....    .
T Consensus       162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~v~~~~~~~~~~~~~~~~----~  231 (341)
T cd08297         162 GLKPGDWVVISGAGGGLGHLGVQYAKAM--GLRVIAIDVGDEKLELAKE----LGADAFVDFKKSDDVEAVKELT----G  231 (341)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH----cCCcEEEcCCCccHHHHHHHHh----c
Confidence            45567888888865  677788888876  4689998888766555532    3322111111112223333321    1


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...+|+++-+...   ...+..+++.++++|.++.-
T Consensus       232 ~~~vd~vl~~~~~---~~~~~~~~~~l~~~g~~v~~  264 (341)
T cd08297         232 GGGAHAVVVTAVS---AAAYEQALDYLRPGGTLVCV  264 (341)
T ss_pred             CCCCCEEEEcCCc---hHHHHHHHHHhhcCCEEEEe
Confidence            3569988853322   23567778899999999864

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK08328 hypothetical protein; Provisional

Probab=88.65  E-value=8.8  Score=29.06  Aligned_cols=83  Identities=18%  Similarity=0.107  Sum_probs=44.2

Q ss_pred             HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc--------------------chHHHHHHHHHhcCCCCcEEE
Q 029803           17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR--------------------ETYEIGLPIIKKAGVDHKINF   75 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~--------------------~~~~~a~~~~~~~~~~~~~~~   75 (187)
                      ..+..+|+-+|||. |...+..+.... -++++.+|.+.                    ...+.+++++...+-.-.++.
T Consensus        24 ~L~~~~VlIiG~GGlGs~ia~~La~~G-vg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~  102 (231)
T PRK08328         24 KLKKAKVAVVGVGGLGSPVAYYLAAAG-VGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIET  102 (231)
T ss_pred             HHhCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEE
Confidence            34667899999973 544444333333 47888888542                    122333445554443334554


Q ss_pred             EEcchHH-HHHHHhhcccCCCceeEEEEeCCC
Q 029803           76 IESEALS-VLDQLLKYSENEGSFDYAFVDADK  106 (187)
Q Consensus        76 ~~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~  106 (187)
                      +.+...+ ....+.      ..+|+|+...+.
T Consensus       103 ~~~~~~~~~~~~~l------~~~D~Vid~~d~  128 (231)
T PRK08328        103 FVGRLSEENIDEVL------KGVDVIVDCLDN  128 (231)
T ss_pred             EeccCCHHHHHHHH------hcCCEEEECCCC
Confidence            4443322 223332      578988865443

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=88.65  E-value=1.5  Score=34.84  Aligned_cols=65  Identities=9%  Similarity=-0.072  Sum_probs=46.2

Q ss_pred             EEEEcccccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803           23 TIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  101 (187)
Q Consensus        23 vLeiG~g~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  101 (187)
                      |+|+.||.|..+.-+-.+   +.+ +.++|+++.+.+.-+.|+.     +  .++.+|..+....-      ...+|+++
T Consensus         1 vidLF~G~GG~~~Gl~~a---G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~~~~------~~~~dvl~   64 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA---GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKISPSD------IPDFDILL   64 (315)
T ss_pred             CEEEecCccHHHHHHHHc---CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhhhhh------CCCcCEEE
Confidence            589999999998888654   344 5679999999888888763     1  44567877653321      24689887


Q ss_pred             Ee
Q 029803          102 VD  103 (187)
Q Consensus       102 ~d  103 (187)
                      ..
T Consensus        65 gg   66 (315)
T TIGR00675        65 GG   66 (315)
T ss_pred             ec
Confidence            54

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=88.64  E-value=10  Score=29.87  Aligned_cols=87  Identities=13%  Similarity=0.145  Sum_probs=50.2

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           19 NAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .+++++-+|.|. |......+...  +.+|+.+|.+++..+.++    ..+.    +..  +. +.+...      -..+
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~----~~G~----~~~--~~-~~l~~~------l~~a  211 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARIT----EMGL----SPF--HL-SELAEE------VGKI  211 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----HcCC----eee--cH-HHHHHH------hCCC
Confidence            578999999863 33334444443  569999999876544333    2332    222  11 122222      2579


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      |+||.....   .-.-+..++.++++++++
T Consensus       212 DiVI~t~p~---~~i~~~~l~~~~~g~vII  238 (296)
T PRK08306        212 DIIFNTIPA---LVLTKEVLSKMPPEALII  238 (296)
T ss_pred             CEEEECCCh---hhhhHHHHHcCCCCcEEE
Confidence            999875321   223355678899977655

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=88.58  E-value=9.4  Score=32.31  Aligned_cols=94  Identities=16%  Similarity=0.081  Sum_probs=54.1

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803           22 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  100 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  100 (187)
                      +|--||.|  ..+..+|..+. .+.+|+..|.+++..+...+.....+.  .+. ...+..+....+       ...|+|
T Consensus         3 ~IgvIGLG--~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~--~i~-~~~s~~e~v~~l-------~~~d~I   70 (470)
T PTZ00142          3 DIGLIGLA--VMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNT--RVK-GYHTLEELVNSL-------KKPRKV   70 (470)
T ss_pred             EEEEEeEh--HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCC--cce-ecCCHHHHHhcC-------CCCCEE
Confidence            34556654  44444444442 256899999999887766554322221  121 223444444332       356877


Q ss_pred             EEeC-CCcccHHHHHHHHhccCCCeEEE
Q 029803          101 FVDA-DKDNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus       101 ~~d~-~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      ++-. +.......++.+.+.|++|-+++
T Consensus        71 il~v~~~~~v~~vi~~l~~~L~~g~iII   98 (470)
T PTZ00142         71 ILLIKAGEAVDETIDNLLPLLEKGDIII   98 (470)
T ss_pred             EEEeCChHHHHHHHHHHHhhCCCCCEEE
Confidence            7653 44455677788889998876654

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=88.53  E-value=7.6  Score=30.24  Aligned_cols=100  Identities=15%  Similarity=0.134  Sum_probs=59.6

Q ss_pred             HHHcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           15 LRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .+..++.+||--.  .|-|.....+++..  +.++++.--+.+..+.++++    |...-+.....|..+....+-    
T Consensus       142 y~vkpGhtVlvhaAAGGVGlll~Ql~ra~--~a~tI~~asTaeK~~~aken----G~~h~I~y~~eD~v~~V~kiT----  211 (336)
T KOG1197|consen  142 YNVKPGHTVLVHAAAGGVGLLLCQLLRAV--GAHTIATASTAEKHEIAKEN----GAEHPIDYSTEDYVDEVKKIT----  211 (336)
T ss_pred             cCCCCCCEEEEEeccccHHHHHHHHHHhc--CcEEEEEeccHHHHHHHHhc----CCcceeeccchhHHHHHHhcc----
Confidence            3455667766543  44566677777764  46777766666655555554    554435555555554444331    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+...|.++=.    --.+.++..+..||+.|+++.
T Consensus       212 ngKGVd~vyDs----vG~dt~~~sl~~Lk~~G~mVS  243 (336)
T KOG1197|consen  212 NGKGVDAVYDS----VGKDTFAKSLAALKPMGKMVS  243 (336)
T ss_pred             CCCCceeeecc----ccchhhHHHHHHhccCceEEE
Confidence            24567866632    223456677789999999886

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=88.51  E-value=8.1  Score=31.65  Aligned_cols=122  Identities=17%  Similarity=0.089  Sum_probs=63.5

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      +|.+.++=+.++.......++-.++|+......+...+.++.+|...+..-......-+.+...+.  .+.+...|..+.
T Consensus        52 np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~--~v~~~~~d~~~l  129 (385)
T PRK08574         52 NPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGV--KVVLAYPSTEDI  129 (385)
T ss_pred             CccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCc--EEEEECCCHHHH
Confidence            455666667777777777788777777665555555555567777665443322222222233332  244444443333


Q ss_pred             HHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCe-EEEEeCCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTL  132 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~  132 (187)
                      ...+.     ..+..+|++...  +....-.++.+.++.+..| .+++|++.
T Consensus       130 ~~~i~-----~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~  176 (385)
T PRK08574        130 IEAIK-----EGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTF  176 (385)
T ss_pred             HHhcC-----ccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCC
Confidence            22221     125678887632  2111223455555555544 56666665

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=88.39  E-value=1.7  Score=35.66  Aligned_cols=52  Identities=15%  Similarity=0.048  Sum_probs=36.9

Q ss_pred             HHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHH
Q 029803           11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK   65 (187)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~   65 (187)
                      -...++..+..+||-|.+|......++ ..-  ..+|++||++|......+=++.
T Consensus        27 D~~aL~i~~~d~vl~ItSaG~N~L~yL-~~~--P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   27 DMEALNIGPDDRVLTITSAGCNALDYL-LAG--PKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             HHHHhCCCCCCeEEEEccCCchHHHHH-hcC--CceEEEEeCCHHHHHHHHHHHH
Confidence            345567778889999988655554444 333  3799999999988877765543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=88.39  E-value=2  Score=37.04  Aligned_cols=93  Identities=6%  Similarity=-0.051  Sum_probs=56.9

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   97 (187)
                      .+++-+  |.|..+..+++.+.+ +..++.+|.+++..+.+++.        ....+.+|+.+  .+.+.     .-++.
T Consensus       418 ~hiiI~--G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a-----~i~~a  482 (558)
T PRK10669        418 NHALLV--GYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLA-----HLDCA  482 (558)
T ss_pred             CCEEEE--CCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhc-----Ccccc
Confidence            345664  457777777877642 56899999999887777642        27788999865  23332     23578


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |.+++..........+-.+.+...|+-.++.
T Consensus       483 ~~viv~~~~~~~~~~iv~~~~~~~~~~~iia  513 (558)
T PRK10669        483 RWLLLTIPNGYEAGEIVASAREKRPDIEIIA  513 (558)
T ss_pred             CEEEEEcCChHHHHHHHHHHHHHCCCCeEEE
Confidence            8777653222211222233455567766665

>PRK08324 short chain dehydrogenase; Validated

Probab=88.33  E-value=9.6  Score=33.76  Aligned_cols=82  Identities=15%  Similarity=0.130  Sum_probs=46.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cCC
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE   94 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~   94 (187)
                      +++.+|-.|+ +|..+..++..+ ..+.+|+.+|.+++..+.+.+.+...   .++.++.+|..+.  +....+.. ...
T Consensus       421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~  496 (681)
T PRK08324        421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF  496 (681)
T ss_pred             CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            3467888775 344444444443 23678999999987766665554332   3577777775321  11111100 012


Q ss_pred             CceeEEEEeC
Q 029803           95 GSFDYAFVDA  104 (187)
Q Consensus        95 ~~~D~i~~d~  104 (187)
                      +++|.||...
T Consensus       497 g~iDvvI~~A  506 (681)
T PRK08324        497 GGVDIVVSNA  506 (681)
T ss_pred             CCCCEEEECC
Confidence            5789988764

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=88.23  E-value=7  Score=32.47  Aligned_cols=96  Identities=14%  Similarity=0.078  Sum_probs=57.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCC
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~   95 (187)
                      ..++++-+|+  |..+..+++.+.. +..++.+|.+++..+..++..      ..+.++.+|+.+  .+...     .-.
T Consensus       230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~-----~~~  296 (453)
T PRK09496        230 PVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEE-----GID  296 (453)
T ss_pred             CCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhc-----CCc
Confidence            3577998777  7777777776643 578999999998877666542      236788888854  33322     235


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      .+|.|++........-....+.+.+.+.-+++
T Consensus       297 ~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii~  328 (453)
T PRK09496        297 EADAFIALTNDDEANILSSLLAKRLGAKKVIA  328 (453)
T ss_pred             cCCEEEECCCCcHHHHHHHHHHHHhCCCeEEE
Confidence            78888775432222222233335555543433

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=88.08  E-value=8.7  Score=28.32  Aligned_cols=82  Identities=13%  Similarity=0.116  Sum_probs=46.4

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhC--CCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEE
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTI--PEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINF   75 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~--~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~   75 (187)
                      ..+..+|+-+|||.  .+.++++.+  ..-++++.+|.+.                   ...+.+.++++..+..-+++.
T Consensus        18 ~L~~s~VlIiG~gg--lG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~   95 (197)
T cd01492          18 RLRSARILLIGLKG--LGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSV   95 (197)
T ss_pred             HHHhCcEEEEcCCH--HHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEE
Confidence            34667899999864  444444433  1146888888642                   123455666666554434555


Q ss_pred             EEcchHHHHHHHhhcccCCCceeEEEEeCCC
Q 029803           76 IESEALSVLDQLLKYSENEGSFDYAFVDADK  106 (187)
Q Consensus        76 ~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~  106 (187)
                      ......+..+.+      -..||+|+.....
T Consensus        96 ~~~~~~~~~~~~------~~~~dvVi~~~~~  120 (197)
T cd01492          96 DTDDISEKPEEF------FSQFDVVVATELS  120 (197)
T ss_pred             EecCccccHHHH------HhCCCEEEECCCC
Confidence            554443322333      2679998875443

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=88.08  E-value=11  Score=30.22  Aligned_cols=97  Identities=20%  Similarity=0.226  Sum_probs=55.7

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++.+++-.|+| .|..++.+|+..  +.+++.++.+++....+.+   ..+..  ..+...+. +.+...      ...
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~--G~~vi~~~~~~~~~~~~~~---~~Ga~--~~i~~~~~-~~~~~~------~~~  244 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSDKKREEALE---HLGAD--DYLVSSDA-AEMQEA------ADS  244 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH---hcCCc--EEecCCCh-HHHHHh------cCC
Confidence            456788877753 556667777765  4678888877665444433   23432  11111221 222222      235


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +|++|-...   ....++.+++.++++|.++.-..
T Consensus       245 ~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        245 LDYIIDTVP---VFHPLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             CcEEEECCC---chHHHHHHHHHhccCCEEEEECC
Confidence            897764322   23466778899999998887543

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=87.98  E-value=6.2  Score=32.76  Aligned_cols=93  Identities=19%  Similarity=0.171  Sum_probs=56.1

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCcee
Q 029803           22 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFD   98 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~D   98 (187)
                      +|+-+|+  |..+..++..+. .+..++.+|.+++.++.+++..       .++++.+|+.+  .+...     .-..+|
T Consensus         2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~-----~~~~a~   67 (453)
T PRK09496          2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPDVLREA-----GAEDAD   67 (453)
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHHHHHHc-----CCCcCC
Confidence            5777765  788888887663 3578999999998776655421       26778888754  23322     135788


Q ss_pred             EEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           99 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        99 ~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+++..........+....+.+.+.-.+++
T Consensus        68 ~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~   97 (453)
T PRK09496         68 LLIAVTDSDETNMVACQIAKSLFGAPTTIA   97 (453)
T ss_pred             EEEEecCChHHHHHHHHHHHHhcCCCeEEE
Confidence            888764333333333344455544434443

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=87.86  E-value=15  Score=30.68  Aligned_cols=78  Identities=14%  Similarity=0.113  Sum_probs=41.0

Q ss_pred             CCEEEEEc-ccccHHHHH--HHhhC---CCCCEEEEEeCCcchH---HHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029803           20 AKKTIEIG-VFTGYSLLL--TALTI---PEDGQITAIDVNRETY---EIGLPIIKKAGVDHKINFIESEALSVLDQLLKY   90 (187)
Q Consensus        20 ~~~vLeiG-~g~G~~~~~--la~~~---~~~~~v~~iD~~~~~~---~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   90 (187)
                      +..++=+| +|.|-++..  +|..+   ..+.+|..++.++...   +..+.+....+++  +.. ..+..++...+.. 
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp--~~~-~~~~~~l~~~l~~-  296 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIP--VEV-VYDPKELAKALEQ-  296 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCc--eEc-cCCHHhHHHHHHH-
Confidence            44677778 778865543  33322   2246888888887543   3334444444443  111 1222222222221 


Q ss_pred             ccCCCceeEEEEeC
Q 029803           91 SENEGSFDYAFVDA  104 (187)
Q Consensus        91 ~~~~~~~D~i~~d~  104 (187)
                         ...+|+|++|.
T Consensus       297 ---~~~~DlVlIDt  307 (424)
T PRK05703        297 ---LRDCDVILIDT  307 (424)
T ss_pred             ---hCCCCEEEEeC
Confidence               25799999995

>PRK14974 cell division protein FtsY; Provisional

Probab=87.83  E-value=13  Score=30.00  Aligned_cols=108  Identities=12%  Similarity=0.129  Sum_probs=55.8

Q ss_pred             CCEEEEEc-ccccHHHHH--HHhhCC-CCCEEEEEeCCc---chHHHHHHHHHhcCCCCcEEEEEcchHHH----HHHHh
Q 029803           20 AKKTIEIG-VFTGYSLLL--TALTIP-EDGQITAIDVNR---ETYEIGLPIIKKAGVDHKINFIESEALSV----LDQLL   88 (187)
Q Consensus        20 ~~~vLeiG-~g~G~~~~~--la~~~~-~~~~v~~iD~~~---~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~~~~   88 (187)
                      |..|+=+| .|.|-++..  ++..+. .+.+|..++.+.   ...+..+.+....+++-.......|....    +... 
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~-  218 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA-  218 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH-
Confidence            55666677 678866532  333232 235666666553   34455555555555431111112232221    1111 


Q ss_pred             hcccCCCceeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           89 KYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                          ....+|+|++|-..     .....-++.+.+.++|+.++++-+..
T Consensus       219 ----~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~  263 (336)
T PRK14974        219 ----KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDAL  263 (336)
T ss_pred             ----HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccc
Confidence                12568999999532     22334455666778898877665543

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.78  E-value=13  Score=29.84  Aligned_cols=94  Identities=16%  Similarity=0.109  Sum_probs=55.3

Q ss_pred             CCEEEEEcccc-c-HHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh-------cCCC-----CcEEEEEcchHHHHH
Q 029803           20 AKKTIEIGVFT-G-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK-------AGVD-----HKINFIESEALSVLD   85 (187)
Q Consensus        20 ~~~vLeiG~g~-G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~-------~~~~-----~~~~~~~~d~~~~~~   85 (187)
                      -++|--||+|+ | .++..++.+   +.+|+..|.+++.++.+++.+..       .+..     .++++.. +..+   
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~a---G~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~---   79 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAH---GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEA---   79 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHH---
Confidence            36788999872 3 334444442   78999999999988776654432       2211     1222221 2111   


Q ss_pred             HHhhcccCCCceeEEEEeCCC--cccHHHHHHHHhccCCCeEEE
Q 029803           86 QLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~--~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      .       -...|+|+-....  .-....+.++.+.++|+.+|.
T Consensus        80 a-------v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIla  116 (321)
T PRK07066         80 C-------VADADFIQESAPEREALKLELHERISRAAKPDAIIA  116 (321)
T ss_pred             H-------hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            1       1567988875422  223467888889999987443

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.75  E-value=9.4  Score=28.33  Aligned_cols=107  Identities=17%  Similarity=0.086  Sum_probs=58.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cCC
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE   94 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~   94 (187)
                      ++++||-.|++ |..+..+++.+ ..+.+|++++.+++......+.+...   .++.++.+|..+.  +..+.+.. ...
T Consensus         4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (238)
T PRK05786          4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVL   79 (238)
T ss_pred             CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            46788888874 54555555444 23679999998887665554444332   2477777776431  11111000 002


Q ss_pred             CceeEEEEeCCCcc--------------------cHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADKDN--------------------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~~--------------------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.+|.++.......                    ....++.+.+.++++|.+++.
T Consensus        80 ~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~  134 (238)
T PRK05786         80 NAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLV  134 (238)
T ss_pred             CCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEE
Confidence            45788876542110                    012245556677778866653

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=87.65  E-value=11  Score=29.01  Aligned_cols=100  Identities=17%  Similarity=0.261  Sum_probs=59.0

Q ss_pred             HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ...++.+|+-.|+  +.|..+..+++..  +.+++.++.+++..+.+++    .+....+.....+..+.+....    .
T Consensus       136 ~~~~~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~i~~~~----~  205 (323)
T cd08241         136 RLQPGETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSEEKLALARA----LGADHVIDYRDPDLRERVKALT----G  205 (323)
T ss_pred             CCCCCCEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCHHHHHHHHH----cCCceeeecCCccHHHHHHHHc----C
Confidence            3456788999887  4666666677764  5689999888876666543    2332112222223323233321    1


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...+|+++-...    ......+++.++++|.++.-
T Consensus       206 ~~~~d~v~~~~g----~~~~~~~~~~~~~~g~~v~~  237 (323)
T cd08241         206 GRGVDVVYDPVG----GDVFEASLRSLAWGGRLLVI  237 (323)
T ss_pred             CCCcEEEEECcc----HHHHHHHHHhhccCCEEEEE
Confidence            346898874322    13456678889999988753

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=87.49  E-value=12  Score=29.44  Aligned_cols=100  Identities=19%  Similarity=0.174  Sum_probs=55.6

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ..++.+||-.|+| .|..+..+|+... ..++++++.+++..+.++    ..+... +--...+..+.+..+.    ...
T Consensus       165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g-~~~v~~~~~~~~~~~~~~----~~g~~~-~~~~~~~~~~~i~~~~----~~~  234 (340)
T cd05284         165 LDPGSTVVVIGVGGLGHIAVQILRALT-PATVIAVDRSEEALKLAE----RLGADH-VLNASDDVVEEVRELT----GGR  234 (340)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHHHHhC-CCcEEEEeCCHHHHHHHH----HhCCcE-EEcCCccHHHHHHHHh----CCC
Confidence            3456788888743 3444445566543 268888888877665553    234321 1111111222223321    124


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+|+++-...   -...++.+++.|+++|.++.-
T Consensus       235 ~~dvvld~~g---~~~~~~~~~~~l~~~g~~i~~  265 (340)
T cd05284         235 GADAVIDFVG---SDETLALAAKLLAKGGRYVIV  265 (340)
T ss_pred             CCCEEEEcCC---CHHHHHHHHHHhhcCCEEEEE
Confidence            6998875322   134577788999999998853

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PRK09028 cystathionine beta-lyase; Provisional

Probab=87.47  E-value=15  Score=30.32  Aligned_cols=124  Identities=12%  Similarity=0.076  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      |....+=..++.......++-..+|+......+...+.++.+|+..+..- .........+...+.  .+.++..+..+.
T Consensus        61 pt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi--~v~~v~~~~~e~  138 (394)
T PRK09028         61 PTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGI--ETTYYDPMIGEG  138 (394)
T ss_pred             chHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcce--EEEEECCCCHHH
Confidence            34445555555555556777777777665555544456678888887643 233334444444443  244443332233


Q ss_pred             HHHHhhcccCCCceeEEEEeC--CCcccHHHHHHHHhccCCCe-EEEEeCCCCCc
Q 029803           84 LDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGG-IAVYDNTLWGG  135 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~--~~~~~~~~~~~~~~~L~~gG-~lv~~~~~~~~  135 (187)
                      +....     ..+-.+|++..  ++......++.+.++.+..| .+++|+++..+
T Consensus       139 l~~~l-----~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p  188 (394)
T PRK09028        139 IRELI-----RPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASP  188 (394)
T ss_pred             HHHhc-----CcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccc
Confidence            33332     24567888874  23333456677777777655 55556665433

>PRK08655 prephenate dehydrogenase; Provisional

Probab=87.43  E-value=4.9  Score=33.57  Aligned_cols=87  Identities=14%  Similarity=0.099  Sum_probs=45.2

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803           22 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  100 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  100 (187)
                      +|.=|| |.|..+..++..+. .+.+|+++|.+++....   .....+.    . ...+..+.          -...|+|
T Consensus         2 kI~IIG-G~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~---~a~~~gv----~-~~~~~~e~----------~~~aDvV   62 (437)
T PRK08655          2 KISIIG-GTGGLGKWFARFLKEKGFEVIVTGRDPKKGKE---VAKELGV----E-YANDNIDA----------AKDADIV   62 (437)
T ss_pred             EEEEEe-cCCHHHHHHHHHHHHCCCEEEEEECChHHHHH---HHHHcCC----e-eccCHHHH----------hccCCEE
Confidence            566776 23444444444432 14589999988765322   1222222    1 11222221          1456888


Q ss_pred             EEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803          101 FVDADKDNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus       101 ~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      ++..........++.+.+.++++.+++
T Consensus        63 Ilavp~~~~~~vl~~l~~~l~~~~iVi   89 (437)
T PRK08655         63 IISVPINVTEDVIKEVAPHVKEGSLLM   89 (437)
T ss_pred             EEecCHHHHHHHHHHHHhhCCCCCEEE
Confidence            776555555566677767777766443

>PRK07671 cystathionine beta-lyase; Provisional

Probab=87.37  E-value=13  Score=30.35  Aligned_cols=120  Identities=12%  Similarity=0.161  Sum_probs=64.1

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHhcCCCCcEEEEEc-chH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIES-EAL   81 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~~~~~~~-d~~   81 (187)
                      +|....|-..++........+-+++|++.....+ ..+.++.+|++.+..-. ......+.+...+.  .+.++.. |..
T Consensus        49 ~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~~  125 (377)
T PRK07671         49 NPTRAALEELIAVLEGGHAGFAFGSGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGI--EHTFVDTSNLE  125 (377)
T ss_pred             ChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCe--EEEEECCCCHH
Confidence            4667777777777666666666888777554443 34455778887765322 33333333444443  2444433 333


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCC-eEEEEeCCC
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVG-GIAVYDNTL  132 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~g-G~lv~~~~~  132 (187)
                      +....+      .+...+|++...  +......++.+.++.+.. ..+++|+++
T Consensus       126 ~l~~ai------~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~  173 (377)
T PRK07671        126 EVEEAI------RPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTF  173 (377)
T ss_pred             HHHHhc------CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence            332222      235678887532  211223455555555554 456666654

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=87.35  E-value=6.8  Score=28.26  Aligned_cols=88  Identities=14%  Similarity=0.090  Sum_probs=49.7

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..+++|.-||+| .|.-....++.+  +.+|+++|.++....    .....+    +  ...+..+.++          .
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~----~~~~~~----~--~~~~l~ell~----------~   91 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEE----GADEFG----V--EYVSLDELLA----------Q   91 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHH----HHHHTT----E--EESSHHHHHH----------H
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhh----hccccc----c--eeeehhhhcc----------h
Confidence            367889999985 344444455554  579999999887544    111111    2  2235444443          4


Q ss_pred             eeEEEEeCC--CcccHHHHHHHHhccCCCeEEE
Q 029803           97 FDYAFVDAD--KDNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        97 ~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      .|+|++...  ++...-+=+..+..||+|.++|
T Consensus        92 aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv  124 (178)
T PF02826_consen   92 ADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV  124 (178)
T ss_dssp             -SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE
T ss_pred             hhhhhhhhccccccceeeeeeeeeccccceEEE
Confidence            788888653  2222222344568899988766

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK08064 cystathionine beta-lyase; Provisional

Probab=87.34  E-value=15  Score=30.15  Aligned_cols=121  Identities=14%  Similarity=0.155  Sum_probs=62.8

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc-hHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      +|...++-+.++........+-+++|+......+. .+.++.+|+..+..=. ........++..|.  .+.++..+-.+
T Consensus        53 ~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~d~~  129 (390)
T PRK08064         53 NPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGI--EHTFVDMTNLE  129 (390)
T ss_pred             ChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCC--EEEEECCCCHH
Confidence            56677777777776665566666776665444443 4555678887765222 33333444444453  24444332223


Q ss_pred             HHHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCC-CeEEEEeCCC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTL  132 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~  132 (187)
                      .+....     ..+..+|++...  +......++.+.++.+. |..+++|+..
T Consensus       130 ~l~~~l-----~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~  177 (390)
T PRK08064        130 EVAQNI-----KPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTF  177 (390)
T ss_pred             HHHHhc-----CCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCC
Confidence            233221     235678887642  22222234445454444 4456666654

>PRK07582 cystathionine gamma-lyase; Validated

Probab=87.26  E-value=11  Score=30.65  Aligned_cols=118  Identities=11%  Similarity=0.024  Sum_probs=65.1

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcch-HHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRET-YEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~-~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      .+....+-+.++... +..++-.++|+......+...+.++.+|+..+..-.. ...++..+...|.  .+.++..+.. 
T Consensus        50 ~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v~~~~~-  125 (366)
T PRK07582         50 NPTWRALEAALGELE-GAEALVFPSGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREAPTAGM-  125 (366)
T ss_pred             CccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEECCCCh-
Confidence            455667777777766 6677778888876655555556657788887755433 3334444444443  2333332211 


Q ss_pred             HHHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCC-CeEEEEeCCC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTL  132 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~  132 (187)
                       ....      ....++|++...  +......++.+.++.+. |..+++|+++
T Consensus       126 -~~~~------~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~  171 (366)
T PRK07582        126 -AEAA------LAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTT  171 (366)
T ss_pred             -HHHh------ccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCC
Confidence             1111      245688887632  11122345666666654 5566777665

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=87.01  E-value=13  Score=29.07  Aligned_cols=96  Identities=20%  Similarity=0.177  Sum_probs=54.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-------CC-C--------CcEEEEEcchHHH
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-------GV-D--------HKINFIESEALSV   83 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-------~~-~--------~~~~~~~~d~~~~   83 (187)
                      -++|.-||+|.=..++....... +.+|+.+|.+++.++.+.+.+...       +. .        .+++. ..+. + 
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~-~-   79 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDL-E-   79 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCH-H-
Confidence            35788888864333222221112 568999999999888765543321       11 0        11222 1222 1 


Q ss_pred             HHHHhhcccCCCceeEEEEeCCC--cccHHHHHHHHhccCCCeEEEE
Q 029803           84 LDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~--~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                        .+       ...|+|+.....  .....+++.+.+.++++.+++.
T Consensus        80 --~~-------~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s  117 (292)
T PRK07530         80 --DL-------ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILAT  117 (292)
T ss_pred             --Hh-------cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence              22       467988876432  2244667888889999887763

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=87.01  E-value=2.7  Score=31.93  Aligned_cols=76  Identities=16%  Similarity=0.264  Sum_probs=40.5

Q ss_pred             ccccHHHHH--HHhhCC-CCCEEEEEeCCcch--HHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEE
Q 029803           28 VFTGYSLLL--TALTIP-EDGQITAIDVNRET--YEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFV  102 (187)
Q Consensus        28 ~g~G~~~~~--la~~~~-~~~~v~~iD~~~~~--~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~  102 (187)
                      .|.|-++..  ++..+. .+.+|..+|-+|+.  .++.++......+++++.+...+-...+...... .+...||+|++
T Consensus        11 GGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e~-a~~~~~d~Vlv   89 (231)
T PF07015_consen   11 GGAGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYEA-AEASGFDFVLV   89 (231)
T ss_pred             CCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHHH-HHhcCCCEEEE
Confidence            356655544  344332 37899999987764  3443322222334556777665543333332110 01246999999


Q ss_pred             eC
Q 029803          103 DA  104 (187)
Q Consensus       103 d~  104 (187)
                      |.
T Consensus        90 Dl   91 (231)
T PF07015_consen   90 DL   91 (231)
T ss_pred             eC
Confidence            93

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=86.93  E-value=13  Score=30.45  Aligned_cols=83  Identities=19%  Similarity=0.247  Sum_probs=45.9

Q ss_pred             HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEE
Q 029803           17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI   76 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~   76 (187)
                      ..+..+|+-+|||. |...+..+.... -++++.+|.+.                   ...+.+++++...+-.-+++.+
T Consensus        38 ~l~~~~VliiG~GglG~~v~~~La~~G-vg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~  116 (370)
T PRK05600         38 RLHNARVLVIGAGGLGCPAMQSLASAG-VGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL  116 (370)
T ss_pred             HhcCCcEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence            34667899999973 433333333323 46888888652                   2345556666655433345555


Q ss_pred             EcchHH-HHHHHhhcccCCCceeEEEEeCCC
Q 029803           77 ESEALS-VLDQLLKYSENEGSFDYAFVDADK  106 (187)
Q Consensus        77 ~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~  106 (187)
                      ...... ....+.      ..+|+|+...+.
T Consensus       117 ~~~i~~~~~~~~~------~~~DlVid~~Dn  141 (370)
T PRK05600        117 RERLTAENAVELL------NGVDLVLDGSDS  141 (370)
T ss_pred             eeecCHHHHHHHH------hCCCEEEECCCC
Confidence            544332 223332      579988754443

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=86.92  E-value=10  Score=31.46  Aligned_cols=114  Identities=18%  Similarity=0.121  Sum_probs=59.9

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      ++...-.+..........+++|-||.| .|...+..+..-. -.+++.+-   ..++.|++...+.+    .+..  . +
T Consensus       161 i~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g-~~~i~IaN---RT~erA~~La~~~~----~~~~--~-l  229 (414)
T COG0373         161 ISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKG-VKKITIAN---RTLERAEELAKKLG----AEAV--A-L  229 (414)
T ss_pred             hHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCC-CCEEEEEc---CCHHHHHHHHHHhC----Ceee--c-H
Confidence            344444556666555678899999998 6655443332211 14555544   45667776666655    1111  1 2


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeCCCC
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNTLW  133 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~~~  133 (187)
                      +.+...      -..+|+||+....+++.--...+.+.+++. ..+++|-...
T Consensus       230 ~el~~~------l~~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavP  276 (414)
T COG0373         230 EELLEA------LAEADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVP  276 (414)
T ss_pred             HHHHHh------hhhCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCC
Confidence            222222      267999999755444432223333333322 2666664443

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=86.91  E-value=14  Score=30.81  Aligned_cols=122  Identities=11%  Similarity=0.103  Sum_probs=66.7

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-chHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      +|.+..|-..++.....+..+-.++|+......+...+.++.+|+..+..- ......+..+...+.  ++.++..+-.+
T Consensus        63 ~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv--~v~~vd~~d~e  140 (431)
T PRK08248         63 NPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGI--TVKFVDPSDPE  140 (431)
T ss_pred             CchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCE--EEEEECCCCHH
Confidence            566777777788777777888888887776666655555567777766321 223333344444453  24444333233


Q ss_pred             HHHHHhhcccCCCceeEEEEeC--CCcccHHHHHHHHhccCCCe-EEEEeCCC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGG-IAVYDNTL  132 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~--~~~~~~~~~~~~~~~L~~gG-~lv~~~~~  132 (187)
                      .+....     .++..+|++..  ++......++++.++.+..| .+++|+++
T Consensus       141 ~l~~ai-----~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~  188 (431)
T PRK08248        141 NFEAAI-----TDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTF  188 (431)
T ss_pred             HHHHhc-----CCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCC
Confidence            333322     23567888763  22122223455555555545 55566654

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=86.82  E-value=13  Score=29.56  Aligned_cols=95  Identities=18%  Similarity=0.214  Sum_probs=55.4

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhcccCC
Q 029803           19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSENE   94 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~~   94 (187)
                      ++.+||-.|+| .|..+..+|+... ..++++++.+++..+.+++    .+..   .++..   +..+.+....     .
T Consensus       175 ~~~~vlI~g~g~vg~~~~~~a~~~G-~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~-----~  241 (350)
T cd08240         175 ADEPVVIIGAGGLGLMALALLKALG-PANIIVVDIDEAKLEAAKA----AGAD---VVVNGSDPDAAKRIIKAA-----G  241 (350)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCc---EEecCCCccHHHHHHHHh-----C
Confidence            56778887754 4556666777653 2378888888777666643    2432   22222   2222222221     1


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.+|+++-....   ...++.+++.|+++|.++.-
T Consensus       242 ~~~d~vid~~g~---~~~~~~~~~~l~~~g~~v~~  273 (350)
T cd08240         242 GGVDAVIDFVNN---SATASLAFDILAKGGKLVLV  273 (350)
T ss_pred             CCCcEEEECCCC---HHHHHHHHHHhhcCCeEEEE
Confidence            268988742211   24577888999999998853

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=86.79  E-value=7.5  Score=26.21  Aligned_cols=97  Identities=12%  Similarity=0.018  Sum_probs=60.0

Q ss_pred             HHHHHHHHcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803           10 LMAMLLRLVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus        10 ll~~l~~~~~~~~vLeiG~g~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      +...+++.....+|+|+|.|.=. .+..+++.   +..++++|+.+.       +   .+  .-++++..|..+.--.+ 
T Consensus         4 ~a~~iAre~~~gkVvEVGiG~~~~VA~~L~e~---g~dv~atDI~~~-------~---a~--~g~~~v~DDitnP~~~i-   67 (129)
T COG1255           4 VAEYIARENARGKVVEVGIGFFLDVAKRLAER---GFDVLATDINEK-------T---AP--EGLRFVVDDITNPNISI-   67 (129)
T ss_pred             HHHHHHHHhcCCcEEEEccchHHHHHHHHHHc---CCcEEEEecccc-------c---Cc--ccceEEEccCCCccHHH-
Confidence            34455666677799999986543 33334432   578999999876       1   11  23778888876532122 


Q ss_pred             hcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803           89 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                           =...|+|+.-..++..+..+-.+.+.++-.-+|.
T Consensus        68 -----Y~~A~lIYSiRpppEl~~~ildva~aVga~l~I~  101 (129)
T COG1255          68 -----YEGADLIYSIRPPPELQSAILDVAKAVGAPLYIK  101 (129)
T ss_pred             -----hhCccceeecCCCHHHHHHHHHHHHhhCCCEEEE
Confidence                 1568999987666666665555555555554443

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=86.70  E-value=14  Score=29.16  Aligned_cols=102  Identities=22%  Similarity=0.183  Sum_probs=53.4

Q ss_pred             HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhc
Q 029803           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKY   90 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~   90 (187)
                      ...++.+||-.|+  +.|..++.+|+..  +.+++.+.-+++..+..++.+...+....+.....   +..+.+....  
T Consensus       143 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~--  218 (341)
T cd08290         143 KLQPGDWVIQNGANSAVGQAVIQLAKLL--GIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAP--  218 (341)
T ss_pred             ccCCCCEEEEccchhHHHHHHHHHHHHc--CCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHc--
Confidence            3456788888774  5677778888876  45665554444222222333333443221111111   2223333221  


Q ss_pred             ccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           91 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                         .+.+|+|+- ....   ..+..+++.|+++|.++.
T Consensus       219 ---~~~~d~vld-~~g~---~~~~~~~~~l~~~G~~v~  249 (341)
T cd08290         219 ---GGRPKLALN-CVGG---KSATELARLLSPGGTMVT  249 (341)
T ss_pred             ---CCCceEEEE-CcCc---HhHHHHHHHhCCCCEEEE
Confidence               126898874 3221   123456788999998875

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=86.67  E-value=4.9  Score=31.47  Aligned_cols=32  Identities=22%  Similarity=0.201  Sum_probs=23.1

Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEE
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIA  126 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~l  126 (187)
                      ...|+||+..........++++.+.|++|.++
T Consensus        63 ~~aD~VivavPi~~~~~~l~~l~~~l~~g~iv   94 (279)
T COG0287          63 AEADLVIVAVPIEATEEVLKELAPHLKKGAIV   94 (279)
T ss_pred             ccCCEEEEeccHHHHHHHHHHhcccCCCCCEE
Confidence            45788888776666777777777777776554

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=86.66  E-value=11  Score=29.76  Aligned_cols=98  Identities=16%  Similarity=0.231  Sum_probs=58.1

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhc
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKY   90 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~   90 (187)
                      ...++.+||-.|+| .|..++.+|+..  +.+ +++++.+++..+.+++    .+..   .++..   +..+.+....  
T Consensus       162 ~~~~g~~VlV~g~g~vg~~~~~la~~~--g~~~v~~~~~s~~~~~~~~~----~g~~---~~~~~~~~~~~~~i~~~~--  230 (343)
T cd08235         162 GIKPGDTVLVIGAGPIGLLHAMLAKAS--GARKVIVSDLNEFRLEFAKK----LGAD---YTIDAAEEDLVEKVRELT--  230 (343)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCc---EEecCCccCHHHHHHHHh--
Confidence            34567788888764 566667777764  456 8888888877665532    2332   22222   2222222221  


Q ss_pred             ccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           91 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                        ....+|+|+-...   ....+..+++.|+++|.++.-
T Consensus       231 --~~~~vd~vld~~~---~~~~~~~~~~~l~~~g~~v~~  264 (343)
T cd08235         231 --DGRGADVVIVATG---SPEAQAQALELVRKGGRILFF  264 (343)
T ss_pred             --CCcCCCEEEECCC---ChHHHHHHHHHhhcCCEEEEE
Confidence              2345898874322   124667778899999988864

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=86.48  E-value=2.7  Score=36.81  Aligned_cols=93  Identities=13%  Similarity=0.066  Sum_probs=55.7

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   97 (187)
                      .+|+-+|+  |..+..+++.+.. +..++.+|.+++.++.+++.    +    ..++.||+.+  .+.+.     .-++.
T Consensus       401 ~~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~----g----~~v~~GDat~~~~L~~a-----gi~~A  465 (621)
T PRK03562        401 PRVIIAGF--GRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF----G----MKVFYGDATRMDLLESA-----GAAKA  465 (621)
T ss_pred             CcEEEEec--ChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc----C----CeEEEEeCCCHHHHHhc-----CCCcC
Confidence            56777665  6666666655432 46899999999988877652    2    5688889865  33332     23578


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |++++..+........-...+.+.|+-.++.
T Consensus       466 ~~vvv~~~d~~~n~~i~~~ar~~~p~~~iia  496 (621)
T PRK03562        466 EVLINAIDDPQTSLQLVELVKEHFPHLQIIA  496 (621)
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            8887754332222222223345556655554

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=86.44  E-value=11  Score=28.94  Aligned_cols=100  Identities=17%  Similarity=0.158  Sum_probs=57.1

Q ss_pred             HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ...++.+++-.|+  +.|..+..+++..  +.+++.++.+++..+.+++    .+....+.....+..+.+..+.    .
T Consensus       136 ~~~~~~~vlv~g~~~~ig~~~~~~~~~~--g~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~  205 (323)
T cd05276         136 GLKAGETVLIHGGASGVGTAAIQLAKAL--GARVIATAGSEEKLEACRA----LGADVAINYRTEDFAEEVKEAT----G  205 (323)
T ss_pred             CCCCCCEEEEEcCcChHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----cCCCEEEeCCchhHHHHHHHHh----C
Confidence            3456778888885  4666666677764  5778888887776665533    2332111111112222222221    1


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...+|+++-....    ..+...++.++++|.++.-
T Consensus       206 ~~~~d~vi~~~g~----~~~~~~~~~~~~~g~~i~~  237 (323)
T cd05276         206 GRGVDVILDMVGG----DYLARNLRALAPDGRLVLI  237 (323)
T ss_pred             CCCeEEEEECCch----HHHHHHHHhhccCCEEEEE
Confidence            3579988753321    2356677888999988753

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>PRK07877 hypothetical protein; Provisional

Probab=86.43  E-value=11  Score=33.80  Aligned_cols=82  Identities=12%  Similarity=0.134  Sum_probs=50.6

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCC-CEEEEEeCCc------------------chHHHHHHHHHhcCCCCcEEEEE
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPED-GQITAIDVNR------------------ETYEIGLPIIKKAGVDHKINFIE   77 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~-~~v~~iD~~~------------------~~~~~a~~~~~~~~~~~~~~~~~   77 (187)
                      ..+..+|+-+|||-|...+..+.... - ++++.+|.+.                  ...+.+++++...+-.-+++.+.
T Consensus       104 ~L~~~~V~IvG~GlGs~~a~~LaraG-vvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~  182 (722)
T PRK07877        104 RLGRLRIGVVGLSVGHAIAHTLAAEG-LCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT  182 (722)
T ss_pred             HHhcCCEEEEEecHHHHHHHHHHHcc-CCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence            44677899999998876555444332 2 6888887533                  23455667776655444566666


Q ss_pred             cchHH-HHHHHhhcccCCCceeEEEEeCC
Q 029803           78 SEALS-VLDQLLKYSENEGSFDYAFVDAD  105 (187)
Q Consensus        78 ~d~~~-~~~~~~~~~~~~~~~D~i~~d~~  105 (187)
                      ..... .+..+.      ..+|+|+-..+
T Consensus       183 ~~i~~~n~~~~l------~~~DlVvD~~D  205 (722)
T PRK07877        183 DGLTEDNVDAFL------DGLDVVVEECD  205 (722)
T ss_pred             ccCCHHHHHHHh------cCCCEEEECCC
Confidence            65433 344442      56898775444

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=86.42  E-value=6.8  Score=30.86  Aligned_cols=79  Identities=13%  Similarity=0.171  Sum_probs=46.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCC
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~   95 (187)
                      ++++||-.| |+|+.+..++..+- .+.+|+++..++.............+...+++++.+|..+.  +..+.      .
T Consensus         4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~------~   76 (325)
T PLN02989          4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI------D   76 (325)
T ss_pred             CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH------c
Confidence            356788777 56777777776552 35688777766654433322222222234688888887653  33332      3


Q ss_pred             ceeEEEEeC
Q 029803           96 SFDYAFVDA  104 (187)
Q Consensus        96 ~~D~i~~d~  104 (187)
                      .+|.|+..+
T Consensus        77 ~~d~vih~A   85 (325)
T PLN02989         77 GCETVFHTA   85 (325)
T ss_pred             CCCEEEEeC
Confidence            578887654

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=86.26  E-value=7.8  Score=27.87  Aligned_cols=94  Identities=17%  Similarity=0.280  Sum_probs=51.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEE-EEEcchHHHHHHHhhcccCCCcee
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKIN-FIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      +++.+-+|+..-..-..... .. ..++.++|.++-.+.   +.     ..+++. +...   ++...+...   .++||
T Consensus         2 ~~~g~V~GS~~PwvEv~aL~-~G-A~~iltveyn~L~i~---~~-----~~dr~ssi~p~---df~~~~~~y---~~~fD   65 (177)
T PF03269_consen    2 GKSGLVVGSMQPWVEVMALQ-HG-AAKILTVEYNKLEIQ---EE-----FRDRLSSILPV---DFAKNWQKY---AGSFD   65 (177)
T ss_pred             CceEEEEecCCchhhHHHHH-cC-CceEEEEeecccccC---cc-----cccccccccHH---HHHHHHHHh---hccch
Confidence            56788888876554333333 22 568999998652211   00     011111 2222   333333222   57899


Q ss_pred             EEEEeC-----------CC---cccHHHHHHHHhccCCCeEEEEe
Q 029803           99 YAFVDA-----------DK---DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        99 ~i~~d~-----------~~---~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++.+-+           ++   ......+..+.++||+||.+++.
T Consensus        66 ~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~  110 (177)
T PF03269_consen   66 FAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLG  110 (177)
T ss_pred             hhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEE
Confidence            875431           22   22344566667899999999885

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=86.25  E-value=9.3  Score=31.40  Aligned_cols=106  Identities=14%  Similarity=0.072  Sum_probs=63.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc---hH--HHHHHHhhcccCC
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---AL--SVLDQLLKYSENE   94 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~--~~~~~~~~~~~~~   94 (187)
                      ...++=-|+|++..=..+.+.++++.+|..+..- .+=+.-.+.++.++..  +..+..+   +.  +.+...++.   .
T Consensus        56 ~~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG-~FG~R~~~ia~~~g~~--v~~~~~~wg~~v~p~~v~~~L~~---~  129 (383)
T COG0075          56 GDVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNG-KFGERFAEIAERYGAE--VVVLEVEWGEAVDPEEVEEALDK---D  129 (383)
T ss_pred             CcEEEEcCCcHHHHHHHHHhccCCCCeEEEEeCC-hHHHHHHHHHHHhCCc--eEEEeCCCCCCCCHHHHHHHHhc---C
Confidence            3556666999998888888888878999998853 3334444455555543  4444332   21  222333222   4


Q ss_pred             CceeEEEEeCCC--cccHHHHHHHHhccCCCeEEEEeCC
Q 029803           95 GSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        95 ~~~D~i~~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +.++.|++-++.  ......++.+.++.|..|.+++-|.
T Consensus       130 ~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDa  168 (383)
T COG0075         130 PDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDA  168 (383)
T ss_pred             CCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEe
Confidence            688888876643  2334456666666666665554443

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=86.21  E-value=7.4  Score=30.48  Aligned_cols=79  Identities=13%  Similarity=0.182  Sum_probs=46.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCC
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~   95 (187)
                      ++++||-.|+ +|+.+..+++.+- .+.+|++++.++.............+...+++++.+|..+.  +..+.      .
T Consensus         3 ~~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~------~   75 (322)
T PLN02662          3 EGKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVV------D   75 (322)
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHH------c
Confidence            3467777664 7888888777662 35688888776554332222211112224688899988652  33321      4


Q ss_pred             ceeEEEEeC
Q 029803           96 SFDYAFVDA  104 (187)
Q Consensus        96 ~~D~i~~d~  104 (187)
                      .+|.||..+
T Consensus        76 ~~d~Vih~A   84 (322)
T PLN02662         76 GCEGVFHTA   84 (322)
T ss_pred             CCCEEEEeC
Confidence            579887654

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=86.11  E-value=9.4  Score=29.98  Aligned_cols=98  Identities=15%  Similarity=0.150  Sum_probs=58.3

Q ss_pred             HHHcCCCEEEEEccc-ccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH-HHhhcc
Q 029803           15 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYS   91 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~   91 (187)
                      .+..++.+||-+|+| .|..++.+|+..  +.+ ++.++.+++..+.+++    .+..   .++..+..+... ...   
T Consensus       155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~--G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~---  222 (334)
T cd08234         155 LGIKPGDSVLVFGAGPIGLLLAQLLKLN--GASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKED---  222 (334)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHh---
Confidence            345567889988865 356667777765  345 8888888877666543    2322   222222111111 111   


Q ss_pred             cCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                       ....+|+++-...   ....+..+++.|+++|.++.
T Consensus       223 -~~~~vd~v~~~~~---~~~~~~~~~~~l~~~G~~v~  255 (334)
T cd08234         223 -NPYGFDVVIEATG---VPKTLEQAIEYARRGGTVLV  255 (334)
T ss_pred             -cCCCCcEEEECCC---ChHHHHHHHHHHhcCCEEEE
Confidence             2357998885321   23567777899999998875

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=86.03  E-value=0.65  Score=30.83  Aligned_cols=33  Identities=15%  Similarity=0.151  Sum_probs=23.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR   54 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~   54 (187)
                      ++...+|||||.|...--+.+.   +.+=.++|...
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~E---Gy~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSE---GYPGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhC---CCCcccccccc
Confidence            4567999999999887666553   55667788643

; GO: 0008168 methyltransferase activity

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=85.96  E-value=13  Score=29.08  Aligned_cols=99  Identities=17%  Similarity=0.131  Sum_probs=56.9

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~   93 (187)
                      ...++.+++-.|+| .|..+..+++..  +.+++.++.+++..+.+++    .+....+.... .+..+.+..+.    .
T Consensus       157 ~~~~g~~vli~g~g~~g~~~~~~a~~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~----~  226 (336)
T cd08276         157 PLKPGDTVLVQGTGGVSLFALQFAKAA--GARVIATSSSDEKLERAKA----LGADHVINYRTTPDWGEEVLKLT----G  226 (336)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEcCCcccCHHHHHHHHc----C
Confidence            34456666665543 455556666664  5789999888777666654    23222111111 22333333331    2


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ...+|+++-...    ...+..+++.|+++|.++.
T Consensus       227 ~~~~d~~i~~~~----~~~~~~~~~~l~~~G~~v~  257 (336)
T cd08276         227 GRGVDHVVEVGG----PGTLAQSIKAVAPGGVISL  257 (336)
T ss_pred             CCCCcEEEECCC----hHHHHHHHHhhcCCCEEEE
Confidence            357998874321    2456778899999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=85.91  E-value=9  Score=31.44  Aligned_cols=105  Identities=11%  Similarity=0.028  Sum_probs=64.8

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCc-EEEEEcchHHHHHHH
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLDQL   87 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~~~   87 (187)
                      -+|..+........|+-++=..|..+++++..-+     +.+--+--.-...++|++.++++.. +++..  ..+.+   
T Consensus        34 ~ll~~~~~~~~~~~~~i~nd~fGal~~~l~~~~~-----~~~~ds~~~~~~~~~n~~~n~~~~~~~~~~~--~~~~~---  103 (378)
T PRK15001         34 YLLQQLDDTEIRGPVLILNDAFGALSCALAEHKP-----YSIGDSYISELATRENLRLNGIDESSVKFLD--STADY---  103 (378)
T ss_pred             HHHHHHhhcccCCCEEEEcCchhHHHHHHHhCCC-----CeeehHHHHHHHHHHHHHHcCCCcccceeec--ccccc---
Confidence            3455554432223799999999999999985422     2221122233445678888887632 44442  22222   


Q ss_pred             hhcccCCCceeEEEEeCCCc--ccHHHHHHHHhccCCCeEEEEe
Q 029803           88 LKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                            ...+|+|++-..+.  .....+.++.+.|.+|+.+++-
T Consensus       104 ------~~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~g  141 (378)
T PRK15001        104 ------PQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAG  141 (378)
T ss_pred             ------cCCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence                  35699999875443  2344577778899999998764

>PRK07411 hypothetical protein; Validated

Probab=85.78  E-value=15  Score=30.23  Aligned_cols=99  Identities=18%  Similarity=0.108  Sum_probs=53.0

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEE
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI   76 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~   76 (187)
                      ..+..+||-+||| .|...+..+.... -++++.+|.+.                   ...+.+.+++...+..-+++.+
T Consensus        35 ~L~~~~VlivG~GGlG~~va~~La~~G-vg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~  113 (390)
T PRK07411         35 RLKAASVLCIGTGGLGSPLLLYLAAAG-IGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY  113 (390)
T ss_pred             HHhcCcEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            3466789999997 3433333322223 46888888632                   2345566677665544456666


Q ss_pred             EcchHH-HHHHHhhcccCCCceeEEEEeCCCcccHHHHH-HHHhccCC
Q 029803           77 ESEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNYHE-RLMKLLKV  122 (187)
Q Consensus        77 ~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~-~~~~~L~~  122 (187)
                      ...... ....+      -..||+|+...+.......+. .+.+.-+|
T Consensus       114 ~~~~~~~~~~~~------~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        114 ETRLSSENALDI------LAPYDVVVDGTDNFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             ecccCHHhHHHH------HhCCCEEEECCCCHHHHHHHHHHHHHcCCC
Confidence            654433 22233      257998876544333333333 33444444

>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A

Probab=85.75  E-value=2.5  Score=26.15  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=20.2

Q ss_pred             HcCCCEEEEEcccccH-HHHHHHhhCCCCCEEEEEeC
Q 029803           17 LVNAKKTIEIGVFTGY-SLLLTALTIPEDGQITAIDV   52 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~-~~~~la~~~~~~~~v~~iD~   52 (187)
                      ...|++||-||+.+|+ .+..++.++..++..+++-.
T Consensus        36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f   72 (78)
T PF12242_consen   36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF   72 (78)
T ss_dssp             -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred             CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence            3567999999999997 34345544444566666544

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=85.63  E-value=3.4  Score=33.90  Aligned_cols=58  Identities=19%  Similarity=0.310  Sum_probs=44.7

Q ss_pred             CcEEEEEcchHHHHHHHhhcccCCCceeEEEE-eC----CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           71 HKINFIESEALSVLDQLLKYSENEGSFDYAFV-DA----DKDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        71 ~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~-d~----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +++++++++..+.+...     ..+++|.+++ |+    +.+...+.++.+.+.++|||.+++-+...
T Consensus       275 drv~i~t~si~~~L~~~-----~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~  337 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRRL-----PPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV  337 (380)
T ss_pred             CeEEEEeccHHHHHHhC-----CCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence            68999999999988764     2578997754 43    33456677888899999999999865543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=85.60  E-value=11  Score=26.77  Aligned_cols=117  Identities=19%  Similarity=0.160  Sum_probs=64.4

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803           22 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  100 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  100 (187)
                      +|-=||+  |..+..+++.+. .+..|+..|.+++..+...+.    +    .+ ...+..+...          ..|+|
T Consensus         3 ~Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~----g----~~-~~~s~~e~~~----------~~dvv   61 (163)
T PF03446_consen    3 KIGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA----G----AE-VADSPAEAAE----------QADVV   61 (163)
T ss_dssp             EEEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT----T----EE-EESSHHHHHH----------HBSEE
T ss_pred             EEEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh----h----hh-hhhhhhhHhh----------cccce
Confidence            4455666  566666666552 367899999988765544432    2    22 2334444433          35999


Q ss_pred             EEeCCC-cccHHHHHH--HHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEeeecC
Q 029803          101 FVDADK-DNYCNYHER--LMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALG  177 (187)
Q Consensus       101 ~~d~~~-~~~~~~~~~--~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~  177 (187)
                      ++.... ......+..  +.+.|++|.+++-..+.                   .-...+++.+.+.. .+....--|+.
T Consensus        62 i~~v~~~~~v~~v~~~~~i~~~l~~g~iiid~sT~-------------------~p~~~~~~~~~~~~-~g~~~vdapV~  121 (163)
T PF03446_consen   62 ILCVPDDDAVEAVLFGENILAGLRPGKIIIDMSTI-------------------SPETSRELAERLAA-KGVRYVDAPVS  121 (163)
T ss_dssp             EE-SSSHHHHHHHHHCTTHGGGS-TTEEEEE-SS---------------------HHHHHHHHHHHHH-TTEEEEEEEEE
T ss_pred             EeecccchhhhhhhhhhHHhhccccceEEEecCCc-------------------chhhhhhhhhhhhh-ccceeeeeeee
Confidence            886533 455666666  77888888777754333                   22235555555543 34666666764


Q ss_pred             Cc
Q 029803          178 DG  179 (187)
Q Consensus       178 ~G  179 (187)
                      .|
T Consensus       122 Gg  123 (163)
T PF03446_consen  122 GG  123 (163)
T ss_dssp             SH
T ss_pred             cc
Confidence            43

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=85.59  E-value=13  Score=29.07  Aligned_cols=92  Identities=17%  Similarity=0.170  Sum_probs=52.7

Q ss_pred             CEEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc--CCC-----------------CcEEEEEcc
Q 029803           21 KKTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVD-----------------HKINFIESE   79 (187)
Q Consensus        21 ~~vLeiG~g~-G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~-----------------~~~~~~~~d   79 (187)
                      ++|.-||+|. |. .+..++..   +.+|+.+|.+++.++.+++.+...  ++.                 .++.. ..+
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~---G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~   79 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFART---GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STS   79 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCC
Confidence            5788888862 22 22223322   568999999999998776654431  110                 01111 111


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCCcc--cHHHHHHHHhccCCCeEEE
Q 029803           80 ALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~D~i~~d~~~~~--~~~~~~~~~~~L~~gG~lv  127 (187)
                      . +   .+       ...|+|+.......  ....++++.+.++++.+++
T Consensus        80 ~-~---~~-------~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~  118 (291)
T PRK06035         80 Y-E---SL-------SDADFIVEAVPEKLDLKRKVFAELERNVSPETIIA  118 (291)
T ss_pred             H-H---Hh-------CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence            1 1   11       45798887653322  4567777878888877665

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=85.56  E-value=15  Score=28.72  Aligned_cols=99  Identities=12%  Similarity=0.070  Sum_probs=58.0

Q ss_pred             HcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           17 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ..++.+++-.|  ...|..+..+++..  +.++++++.+++..+.+++    .+....+.....+..+.+..+.    ..
T Consensus       138 ~~~g~~vlI~g~~g~ig~~~~~lak~~--G~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~~  207 (327)
T PRK10754        138 IKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGSAQKAQRAKK----AGAWQVINYREENIVERVKEIT----GG  207 (327)
T ss_pred             CCCCCEEEEEeCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCCCEEEcCCCCcHHHHHHHHc----CC
Confidence            44567777765  35677777788875  5788999888776665532    3432112111222223333331    23


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+|+++ +...   .......++.++++|.++.-
T Consensus       208 ~~~d~vl-~~~~---~~~~~~~~~~l~~~g~~v~~  238 (327)
T PRK10754        208 KKVRVVY-DSVG---KDTWEASLDCLQRRGLMVSF  238 (327)
T ss_pred             CCeEEEE-ECCc---HHHHHHHHHHhccCCEEEEE
Confidence            4689776 4322   23556678999999988853

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=85.47  E-value=14  Score=29.08  Aligned_cols=95  Identities=20%  Similarity=0.212  Sum_probs=56.8

Q ss_pred             CCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           20 AKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        20 ~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      +.+||-.|+  +.|..++.+|+... +.+++++..+++..+.+++    .+....+. ...+....+...     ..+.+
T Consensus       149 g~~vlV~ga~g~vg~~~~~~ak~~~-G~~vi~~~~~~~~~~~l~~----~g~~~~~~-~~~~~~~~i~~~-----~~~~v  217 (336)
T TIGR02817       149 KRALLIIGGAGGVGSILIQLARQLT-GLTVIATASRPESQEWVLE----LGAHHVID-HSKPLKAQLEKL-----GLEAV  217 (336)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHhC-CCEEEEEcCcHHHHHHHHH----cCCCEEEE-CCCCHHHHHHHh-----cCCCC
Confidence            678888874  56777777887642 5688998877766655532    34321111 112222323322     13469


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+++ +..  .....+..+++.|+++|.++.
T Consensus       218 d~vl-~~~--~~~~~~~~~~~~l~~~G~~v~  245 (336)
T TIGR02817       218 SYVF-SLT--HTDQHFKEIVELLAPQGRFAL  245 (336)
T ss_pred             CEEE-EcC--CcHHHHHHHHHHhccCCEEEE
Confidence            9887 421  123456778889999998875

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=85.24  E-value=16  Score=29.92  Aligned_cols=121  Identities=12%  Similarity=0.096  Sum_probs=64.0

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-cchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      +|.+..|=..++........+-.++|+......++ .+.++.+|+..+.. +.........+...+..  +.++..+-.+
T Consensus        49 ~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~-~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~--v~~vd~~d~e  125 (380)
T PRK06176         49 NPTRFALEELIADLEGGVKGFAFASGLAGIHAVFS-LFQSGDHVLLGDDVYGGTFRLFDKVLVKNGLS--CTIIDTSDLS  125 (380)
T ss_pred             ChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH-HcCCCCEEEEcCCChhHHHHHHHHHHHhcCeE--EEEcCCCCHH
Confidence            56677777777777767777888888776654443 45557788886642 22233333334444432  3333222223


Q ss_pred             HHHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCe-EEEEeCCC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGG-IAVYDNTL  132 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG-~lv~~~~~  132 (187)
                      .+....     .++..+|++...  +......++.+.++.+..| .+++|++.
T Consensus       126 ~l~~ai-----~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~  173 (380)
T PRK06176        126 QIKKAI-----KPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTF  173 (380)
T ss_pred             HHHHhc-----CcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCc
Confidence            333321     235678887532  2112223555556666555 55555554

>PRK06940 short chain dehydrogenase; Provisional

Probab=85.08  E-value=14  Score=28.53  Aligned_cols=80  Identities=19%  Similarity=0.185  Sum_probs=47.6

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcccCCCcee
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYSENEGSFD   98 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~D   98 (187)
                      +.+|-.|+  |..+..+++.+..+.+|+.++.+++.++...+.+...+  .++.++.+|..+.  +..+...-...+++|
T Consensus         3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            35565554  56778888777657899999988776665555554333  3567777776331  222111000125789


Q ss_pred             EEEEeC
Q 029803           99 YAFVDA  104 (187)
Q Consensus        99 ~i~~d~  104 (187)
                      .++..+
T Consensus        79 ~li~nA   84 (275)
T PRK06940         79 GLVHTA   84 (275)
T ss_pred             EEEECC
Confidence            888764

>PRK07680 late competence protein ComER; Validated

Probab=85.08  E-value=7.2  Score=30.16  Aligned_cols=87  Identities=15%  Similarity=0.025  Sum_probs=49.1

Q ss_pred             EEEEEcccccHHHHHHHhhCCCC-----CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           22 KTIEIGVFTGYSLLLTALTIPED-----GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~~~-----~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      +|.=||+  |..+..++..+...     ..++.++.+++..+...+.+     . .+.. ..+..+.+          ..
T Consensus         2 ~I~iIG~--G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~-----~-g~~~-~~~~~~~~----------~~   62 (273)
T PRK07680          2 NIGFIGT--GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY-----P-GIHV-AKTIEEVI----------SQ   62 (273)
T ss_pred             EEEEECc--cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc-----C-CeEE-ECCHHHHH----------Hh
Confidence            4666776  44444444443212     36888898876554433221     1 1332 22333322          35


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      .|+||+...+......++.+.+.++++..++
T Consensus        63 aDiVilav~p~~~~~vl~~l~~~l~~~~~ii   93 (273)
T PRK07680         63 SDLIFICVKPLDIYPLLQKLAPHLTDEHCLV   93 (273)
T ss_pred             CCEEEEecCHHHHHHHHHHHHhhcCCCCEEE
Confidence            6999887655556677777777787776544

>PRK06153 hypothetical protein; Provisional

Probab=85.07  E-value=20  Score=29.54  Aligned_cols=98  Identities=18%  Similarity=0.107  Sum_probs=53.3

Q ss_pred             HHHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc----------------------chHHHHHHHHHhcCCCC
Q 029803           15 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR----------------------ETYEIGLPIIKKAGVDH   71 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~----------------------~~~~~a~~~~~~~~~~~   71 (187)
                      .+..+..+|+-+||| +|...+..+...+ -++++.+|.+.                      ...+.+++++...+.  
T Consensus       171 q~kL~~~~VaIVG~GG~GS~Va~~LAR~G-VgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~--  247 (393)
T PRK06153        171 SAKLEGQRIAIIGLGGTGSYILDLVAKTP-VREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR--  247 (393)
T ss_pred             HHHHhhCcEEEEcCCccHHHHHHHHHHcC-CCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC--
Confidence            345577899999987 5555555555555 57899888642                      122334555554442  


Q ss_pred             cEEEEEcchHH-HHHHHhhcccCCCceeEEEEeCCCcccHH-HHHHHHhccCC
Q 029803           72 KINFIESEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCN-YHERLMKLLKV  122 (187)
Q Consensus        72 ~~~~~~~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~~~~~~-~~~~~~~~L~~  122 (187)
                      .+..+...... .+..+       ..+|+||...+...... ..+.+.+...|
T Consensus       248 ~I~~~~~~I~~~n~~~L-------~~~DiV~dcvDn~~aR~~ln~~a~~~gIP  293 (393)
T PRK06153        248 GIVPHPEYIDEDNVDEL-------DGFTFVFVCVDKGSSRKLIVDYLEALGIP  293 (393)
T ss_pred             eEEEEeecCCHHHHHHh-------cCCCEEEEcCCCHHHHHHHHHHHHHcCCC
Confidence            24444333221 22222       67999987655433333 33444444444

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=85.03  E-value=0.87  Score=37.95  Aligned_cols=105  Identities=10%  Similarity=0.015  Sum_probs=58.3

Q ss_pred             HcCCCEEEEEcccccH--HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHH-HHHHHhhccc
Q 029803           17 LVNAKKTIEIGVFTGY--SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALS-VLDQLLKYSE   92 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~--~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~-~~~~~~~~~~   92 (187)
                      ..+|..+.++|+|.|.  +++...-... .-.++.||.+..+.....++.+.-..-... ++.. ...+ .++.     .
T Consensus       198 ~f~pd~~~dfgsg~~~~~~a~~~lwr~t-~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~-~v~~~~~~r~~~pi-----~  270 (491)
T KOG2539|consen  198 KFRPDLLRDFGSGAGNGGWAAVLLWRQT-KREYSLVDRSRAMLKQSEKNLRDGSHIGEP-IVRKLVFHRQRLPI-----D  270 (491)
T ss_pred             ccChHHHHHHHhhcccchhhhhhhcccc-cceeEeeccchHHHHHHHHhhcChhhcCch-hccccchhcccCCC-----C
Confidence            4567788899888664  3333222211 457899999999999888887651111111 1111 1111 1121     1


Q ss_pred             CCCceeEEEEeCC------CcccHHHH-HHHHhccCCCeEEEE
Q 029803           93 NEGSFDYAFVDAD------KDNYCNYH-ERLMKLLKVGGIAVY  128 (187)
Q Consensus        93 ~~~~~D~i~~d~~------~~~~~~~~-~~~~~~L~~gG~lv~  128 (187)
                      ..+.||++++.+.      ...-.... .......++|+.+++
T Consensus       271 ~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lVi  313 (491)
T KOG2539|consen  271 IKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVI  313 (491)
T ss_pred             cccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEE
Confidence            2456999998742      22122223 333468888988876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	187
3c3y_A	237	Crystal Structure Of Pfomt, Phenylpropanoid And Fla		6e-73
1sui_A	247	Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase L		3e-62
2avd_A	229	Crystal Structure Of Human Catechol-O-Methyltransfe		1e-29
3cbg_A	232	Functional And Structural Characterization Of A Cat		2e-29
3r3h_A	242	Crystal Structure Of O-Methyltransferase From Legio		4e-29
3tr6_A	225	Structure Of A O-Methyltransferase From Coxiella Bu		1e-23
2hnk_A	239	Crystal Structure Of Sam-dependent O-methyltransfer		1e-21
3tfw_A	248	Crystal Structure Of A Putative O-Methyltransferase		2e-16
3dul_A	223	Crystal Structure Analysis Of The O-Methyltransfera		8e-12
2gpy_A	233	Crystal Structure Of Putative O-methyltransferase F		6e-11
3ntv_A	232	Crystal Structure Of A Putative Caffeoyl-Coa O-Meth		9e-08
3oe4_A	221	Rat Catechol O-Methyltransferase In Complex With A		6e-06
1jr4_A	221	Catechol O-Methyltransferase Bisubstrate-Inhibitor		2e-05
2zlb_A	223	Crystal Structure Of Apo Form Of Rat Catechol-O- Me		2e-05
3bwm_A	214	Crystal Structure Of Human Catechol O-Methyltransfe		7e-05
3a7e_A	216	Crystal Structure Of Human Comt Complexed With Sam		7e-05
3bwy_A	214	Crystal Structure Of Human 108m Catechol O- Methylt		2e-04

>pdb|3C3Y|A Chain A, Crystal Structure Of Pfomt, Phenylpropanoid And Flavonoid O- Methyltransferase From M. Crystallinum Length = 237

Iteration: 1
 Score =  269 bits (688), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 124/182 (68%), Positives = 155/182 (85%), Gaps = 1/182 (0%)
Query: 6   IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK 65
           + GQLM+ +L+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+ITAID +RE YEIGLP I+
Sbjct: 57  LAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIR 116
Query: 66  KAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 125
           KAGV+HKINFIES+A+  LD LL+  E+EGS+D+ FVDADK NY  YHERLMKL+KVGGI
Sbjct: 117 KAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGI 176
Query: 126 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 185
             YDNTLWGGTVA PE +VPD F   +R+A+++LN+ LA DPR+++ H+ LGDGIT CRR
Sbjct: 177 VAYDNTLWGGTVAQPESEVPD-FMKENREAVIELNKLLAADPRIEIVHLPLGDGITFCRR 235
Query: 186 IF 187
           ++
Sbjct: 236 LY 237

>pdb|1SUI|A Chain A, Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase Length = 247

Iteration: 1
 Score =  234 bits (596), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 107/179 (59%), Positives = 142/179 (79%)
Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+GLP+IKKA
Sbjct: 68  GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA 127
Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GVDHKI+F E  AL VLD+++K  +N GS+D+ FVDADKDNY NYH+RL+ L+KVGG+  
Sbjct: 128 GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIG 187
Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
           YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGITICRRI
Sbjct: 188 YDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 246

>pdb|2AVD|A Chain A, Crystal Structure Of Human Catechol-O-Methyltransferase Domain Containing 1 Length = 229

Iteration: 1
 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 106/180 (58%), Gaps = 7/180 (3%)
Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
             QL+A L RL+ AKK +++G FTGYS L  AL +P DG++   +V+ +  E+G P+ ++
Sbjct: 57  QAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQ 116
Query: 67  AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 126
           A  +HKI+     AL  LD+LL   E  G+FD A VDADK+N   Y+ER ++LL+ GGI 
Sbjct: 117 AEAEHKIDLRLKPALETLDELLAAGEA-GTFDVAVVDADKENCSAYYERCLQLLRPGGIL 175
Query: 127 VYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
                LW G V  P +         + + + +LN  +  D RV +S + LGDG+T+  +I
Sbjct: 176 AVLRVLWRGKVLQPPKG------DVAAECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 229

>pdb|3CBG|A Chain A, Functional And Structural Characterization Of A Cationdependent O-Methyltransferase From The Cyanobacterium Synechocystis Sp. Strain Pcc 6803 Length = 232

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/179 (40%), Positives = 99/179 (55%), Gaps = 11/179 (6%)
Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
             Q + +L+ L  AK+ +EIGVF GYS L  AL +P DGQI A D +     I     +K
Sbjct: 60  QAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQK 119
Query: 67  AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 126
           AGV  KI+     AL+ L+QL +  +    FD  F+DADK NY  Y+E  + LL+ GG+ 
Sbjct: 120 AGVAEKISLRLGPALATLEQLTQ-GKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLM 178
Query: 127 VYDNTLWGGTVAV--PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 183
           V DN LW G V    P+E        +  Q +   NR LA D RV++S + LGDG+T+ 
Sbjct: 179 VIDNVLWHGKVTEVDPQE--------AQTQVLQQFNRDLAQDERVRISVIPLGDGMTLA 229

>pdb|3R3H|A Chain A, Crystal Structure Of O-Methyltransferase From Legionella Pneumophila Length = 242

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 101/183 (55%), Gaps = 13/183 (7%)
Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
             Q M ML+RL  AKK +E+G FTGYS L  +L +P+DGQ+   D+N    +   P  ++
Sbjct: 48  QAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWRE 107
Query: 67  AGVDHKINFIESEALSVLDQLLKYSENEG---SFDYAFVDADKDNYCNYHERLMKLLKVG 123
           A  +HKI      AL  L  LL    NEG    FD+ F+DADK NY NY+E  +KL+   
Sbjct: 108 AKQEHKIKLRLGPALDTLHSLL----NEGGEHQFDFIFIDADKTNYLNYYELALKLVTPK 163
Query: 124 GIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 183
           G+   DN  W G V  P +       G +R+ I  LN+ + +D RV +S +A+ DG+ + 
Sbjct: 164 GLIAIDNIFWDGKVIDPNDT-----SGQTRE-IKKLNQVIKNDSRVFVSLLAIADGMFLV 217
Query: 184 RRI 186
           + I
Sbjct: 218 QPI 220

>pdb|3TR6|A Chain A, Structure Of A O-Methyltransferase From Coxiella Burnetii Length = 225

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 63/179 (35%), Positives = 98/179 (54%), Gaps = 7/179 (3%)
Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
             QL+A+L++L  AKK I+IG FTGYS +   L +P+DG +   DV+ ++  +     +K
Sbjct: 52  QAQLLALLVKLXQAKKVIDIGTFTGYSAIAXGLALPKDGTLITCDVDEKSTALAKEYWEK 111
Query: 67  AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 126
           AG+  KI    S A   L +L+ ++     +D  ++DADK N   Y+E  +KLL+ GG+ 
Sbjct: 112 AGLSDKIGLRLSPAKDTLAELI-HAGQAWQYDLIYIDADKANTDLYYEESLKLLREGGLI 170
Query: 127 VYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 185
             DN L  G VA  E Q  ++      Q I   N+ +  D RV    + +GDG+T+ R+
Sbjct: 171 AVDNVLRRGQVADEENQSENN------QLIRLFNQKVYKDERVDXILIPIGDGLTLARK 223

>pdb|2HNK|A Chain A, Crystal Structure Of Sam-dependent O-methyltransferase From Pathogenic Bacterium Leptospira Interrogans Length = 239

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/189 (35%), Positives = 100/189 (52%), Gaps = 16/189 (8%)
Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
            GQ + +L ++  AK+ IEIG FTGYS L  A  +PEDG+I   DV+ E   +     K+
Sbjct: 48  EGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKE 107
Query: 67  AGVDHKINFIESEALSVLDQLL----------KYSENEGSFDYAFVDADKDNYCNYHERL 116
            G+++KI      AL  L  L+           ++    S D  F+DADK+NY NY+  +
Sbjct: 108 NGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLI 167
Query: 117 MKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVAL 176
           +KLLK GG+ + DN LW G+VA    Q P      S   I   N  + +D  V +S V +
Sbjct: 168 LKLLKPGGLLIADNVLWDGSVADLSHQEP------STVGIRKFNELVYNDSLVDVSLVPI 221
Query: 177 GDGITICRR 185
            DG+++ R+
Sbjct: 222 ADGVSLVRK 230

>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From Klebsiella Pneumoniae Length = 248

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
            GQ +A+L+RL  AK+ +EIG   GYS +  A  +P DGQ+  ++ +    ++    ++ 
Sbjct: 51  QGQFLALLVRLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVARENLQL 110
Query: 67  AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIA 126
           AGVD ++   E  AL  L+ L +      +FD  F+DADK N  +Y    ++  + G + 
Sbjct: 111 AGVDQRVTLREGPALQSLESLGECP----AFDLIFIDADKPNNPHYLRWALRYSRPGTLI 166
Query: 127 VYDNTLWGGTVAVPE 141
           + DN +  G V  P+
Sbjct: 167 IGDNVVRDGEVVNPQ 181

>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From Bacillus Cereus Length = 223

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 14/166 (8%)
Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
            G+ + +L+++  A+  +EIG   GYS +  A  +   G++  ++ + +  +I    I++
Sbjct: 46  QGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIER 105
Query: 67  AGVDHKINFIESEALSVLDQLLKYSENEG--SFDYAFVDADKDNYCNYHERLMKLLKVGG 124
           A ++ ++      AL  L Q+    ENE    FD+ F+DADK N   Y E  +KL + G 
Sbjct: 106 ANLNDRVEVRTGLALDSLQQI----ENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPGT 161
Query: 125 IAVYDNTLWGGTVAVPEEQVPDHFRGSSR-QAILDLNRSLADDPRV 169
           + + DN        V E +V D+     R Q I      +A +PRV
Sbjct: 162 VIIGDNV-------VREGEVIDNTSNDPRVQGIRRFYELIAAEPRV 200

>pdb|2GPY|A Chain A, Crystal Structure Of Putative O-methyltransferase From Bacillus Halodurans Length = 233

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 80/171 (46%), Gaps = 9/171 (5%)
Query: 14  LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKI 73
           LL+     + +EIG   GYS +  A  +PE   I +I+ +   YE     +K  G++ +I
Sbjct: 49  LLKXAAPARILEIGTAIGYSAIRXAQALPE-ATIVSIERDERRYEEAHKHVKALGLESRI 107
Query: 74  NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLW 133
             +  +AL + ++L  Y      FD  F+DA K  Y  + +     ++ GG+ + DN L+
Sbjct: 108 ELLFGDALQLGEKLELYP----LFDVLFIDAAKGQYRRFFDXYSPXVRPGGLILSDNVLF 163
Query: 134 GGTVAVPEEQVPDHFRGSSRQAILD-LNRSLADDPRVQLSHVALGDGITIC 183
            G VA   E   +H R       +D  N+ L + P+       +GDGI I 
Sbjct: 164 RGLVA---ETDIEHKRHKQLATKIDTYNQWLLEHPQYDTRIFPVGDGIAIS 211

>pdb|3NTV|A Chain A, Crystal Structure Of A Putative Caffeoyl-Coa O-Methyltransferase From Staphylococcus Aureus Length = 232

Iteration: 1
 Score = 53.1 bits (126), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/174 (25%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 10  LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 69
           L+  L+R  N K  +EIG   GYS    A +I +D  +T I+ N    +     +     
Sbjct: 62  LIKQLIRXNNVKNILEIGTAIGYSSXQFA-SISDDIHVTTIERNETXIQYAKQNLATYHF 120
Query: 70  DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD 129
           ++++  IE  AL   + +     N+  +D  F+DA K     + E    LLK  G+ + D
Sbjct: 121 ENQVRIIEGNALEQFENV-----NDKVYDXIFIDAAKAQSKKFFEIYTPLLKHQGLVITD 175
Query: 130 NTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 183
           N L+ G V+        + R   ++ + D N  L   P    + + + DG+ I 
Sbjct: 176 NVLYHGFVSDIGIVRSRNVRQXVKK-VQDYNEWLIKQPGYTTNFLNIDDGLAIS 228

>pdb|3OE4|A Chain A, Rat Catechol O-Methyltransferase In Complex With A Catechol-Type, Purine-Containing Bisubstrate Inhibitor - Humanized Form Length = 221

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 14/151 (9%)
Query: 7   HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
            GQ+M  ++R  +    +E+G + GYS +  A  +    ++  +++N +   I   ++  
Sbjct: 46  KGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNF 105
Query: 67  AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGG 124
           AG+  K+  +   +  ++ QL K  + + + D  F+D  KD Y      L K  LL+ G 
Sbjct: 106 AGLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGT 164
Query: 125 IAVYDNTLWGGTVAVPEEQVPD---HFRGSS 152
           + + DN +  GT        PD   + RGSS
Sbjct: 165 VLLADNVIVPGT--------PDFLAYVRGSS 187

>pdb|1JR4|A Chain A, Catechol O-Methyltransferase Bisubstrate-Inhibitor Complex Length = 221

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQ+M  ++R  +    +E+G + GYS +  A  +    ++  +++N +   I   ++  A
Sbjct: 47  GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA 106
Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGI 125
           G+  K+  +   +  ++ QL K  + + + D  F+D  KD Y      L K  LL+ G +
Sbjct: 107 GLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 165
Query: 126 AVYDNTLWGGTVAVPEEQVPD---HFRGSS 152
            + DN +  GT        PD   + RGSS
Sbjct: 166 LLADNVIVPGT--------PDFLAYVRGSS 187

>pdb|2ZLB|A Chain A, Crystal Structure Of Apo Form Of Rat Catechol-O- Methyltransferase Length = 223

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQ+M  ++R  +    +E+G + GYS +  A  +    ++  +++N +   I   ++  A
Sbjct: 49  GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA 108
Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGI 125
           G+  K+  +   +  ++ QL K  + + + D  F+D  KD Y      L K  LL+ G +
Sbjct: 109 GLQDKVTILNGASQDLIPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 167
Query: 126 AVYDNTLWGGTVAVPEEQVPD---HFRGSS 152
            + DN +  GT        PD   + RGSS
Sbjct: 168 LLADNVIVPGT--------PDFLAYVRGSS 189

>pdb|3BWM|A Chain A, Crystal Structure Of Human Catechol O-Methyltransferase With Bound Sam And Dnc Length = 214

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 24  IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83
           +E+G + GYS +  A  +    ++  I++N +   I   ++  AGV  K+  +   +  +
Sbjct: 62  LELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDI 121
Query: 84  LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTVAVPE 141
           + QL K  + + + D  F+D  KD Y      L +  LL+ G + + DN +  G      
Sbjct: 122 IPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGA----- 175
Query: 142 EQVPD---HFRGSS 152
              PD   H RGSS
Sbjct: 176 ---PDFLAHVRGSS 186

>pdb|3A7E|A Chain A, Crystal Structure Of Human Comt Complexed With Sam And 3,5- Dinitrocatechol Length = 216

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 24  IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83
           +E+G + GYS +  A  +    ++  I++N +   I   ++  AGV  K+  +   +  +
Sbjct: 65  LELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDI 124
Query: 84  LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTVAVPE 141
           + QL K  + + + D  F+D  KD Y      L +  LL+ G + + DN +  G      
Sbjct: 125 IPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGA----- 178
Query: 142 EQVPD---HFRGSS 152
              PD   H RGSS
Sbjct: 179 ---PDFLAHVRGSS 189

>pdb|3BWY|A Chain A, Crystal Structure Of Human 108m Catechol O- Methyltransferase Bound With S-Adenosylmethionine And Inhibitor Dinitrocatechol Length = 214

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 14/134 (10%)
Query: 24  IEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV 83
           +E+G + GYS +  A  +    ++  I++N +   I   ++  AG+  K+  +   +  +
Sbjct: 62  LELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGMKDKVTLVVGASQDI 121
Query: 84  LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK--LLKVGGIAVYDNTLWGGTVAVPE 141
           + QL K  + + + D  F+D  KD Y      L +  LL+ G + + DN +  G      
Sbjct: 122 IPQLKKKYDVD-TLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGA----- 175
Query: 142 EQVPD---HFRGSS 152
              PD   H RGSS
Sbjct: 176 ---PDFLAHVRGSS 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	4e-84
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	3e-83
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	3e-77
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	5e-77
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	4e-76
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	5e-76
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	1e-75
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	2e-75
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	4e-75
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	1e-74
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	5e-74
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	6e-71
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	3e-68
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	3e-61
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2b25_A	336	Hypothetical protein; structural genomics, methyl	7e-04

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score =  247 bits (632), Expect = 4e-84
 Identities = 124/187 (66%), Positives = 156/187 (83%), Gaps = 1/187 (0%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 60
           M    + GQLM+ +L+LVNAKKTIE+GVFTGYSLLLTAL+IP+DG+ITAID +RE YEIG
Sbjct: 52  MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIG 111

Query: 61  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 120
           LP I+KAGV+HKINFIES+A+  LD LL+  E+EGS+D+ FVDADK NY  YHERLMKL+
Sbjct: 112 LPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLV 171

Query: 121 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 180
           KVGGI  YDNTLWGGTVA PE +VPD  +  +R+A+++LN+ LA DPR+++ H+ LGDGI
Sbjct: 172 KVGGIVAYDNTLWGGTVAQPESEVPDFMK-ENREAVIELNKLLAADPRIEIVHLPLGDGI 230

Query: 181 TICRRIF 187
           T CRR++
Sbjct: 231 TFCRRLY 237

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score =  245 bits (627), Expect = 3e-83
 Identities = 108/186 (58%), Positives = 143/186 (76%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 60
           M      GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+G
Sbjct: 61  MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELG 120

Query: 61  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 120
           LP+IKKAGVDHKI+F E  AL VLD+++K  +N GS+D+ FVDADKDNY NYH+RL+ L+
Sbjct: 121 LPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLV 180

Query: 121 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 180
           KVGG+  YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGI
Sbjct: 181 KVGGVIGYDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGI 240

Query: 181 TICRRI 186
           TICRRI
Sbjct: 241 TICRRI 246

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score =  229 bits (586), Expect = 3e-77
 Identities = 64/185 (34%), Positives = 100/185 (54%), Gaps = 7/185 (3%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 60
           M       QL+A+L++L+ AKK I+IG FTGYS +   L +P+DG +   DV+ ++  + 
Sbjct: 46  MQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALA 105

Query: 61  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 120
               +KAG+  KI    S A   L +L+   +    +D  ++DADK N   Y+E  +KLL
Sbjct: 106 KEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQ-AWQYDLIYIDADKANTDLYYEESLKLL 164

Query: 121 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 180
           + GG+   DN L  G VA  E Q  ++      Q I   N+ +  D RV +  + +GDG+
Sbjct: 165 REGGLIAVDNVLRRGQVADEENQSENN------QLIRLFNQKVYKDERVDMILIPIGDGL 218

Query: 181 TICRR 185
           T+ R+
Sbjct: 219 TLARK 223

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score =  229 bits (586), Expect = 5e-77
 Identities = 68/186 (36%), Positives = 98/186 (52%), Gaps = 7/186 (3%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 60
           M +     Q M ML+RL  AKK +E+G FTGYS L  +L +P+DGQ+   D+N    +  
Sbjct: 42  MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHA 101

Query: 61  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 120
            P  ++A  +HKI      AL  L  LL     E  FD+ F+DADK NY NY+E  +KL+
Sbjct: 102 HPYWREAKQEHKIKLRLGPALDTLHSLLNEGG-EHQFDFIFIDADKTNYLNYYELALKLV 160

Query: 121 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 180
              G+   DN  W G V  P +           + I  LN+ + +D RV +S +A+ DG+
Sbjct: 161 TPKGLIAIDNIFWDGKVIDPNDTSGQ------TREIKKLNQVIKNDSRVFVSLLAIADGM 214

Query: 181 TICRRI 186
            + + I
Sbjct: 215 FLVQPI 220

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score =  226 bits (579), Expect = 4e-76
 Identities = 45/178 (25%), Positives = 77/178 (43%), Gaps = 7/178 (3%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
             L+  L+R+ N K  +EIG   GYS +  A  I +D  +T I+ N    +     +   
Sbjct: 60  LDLIKQLIRMNNVKNILEIGTAIGYSSMQFAS-ISDDIHVTTIERNETMIQYAKQNLATY 118

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
             ++++  IE  AL   + +     N+  +D  F+DA K     + E    LLK  G+ +
Sbjct: 119 HFENQVRIIEGNALEQFENV-----NDKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVI 173

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 185
            DN L+ G V+        + R    + + D N  L   P    + + + DG+ I  +
Sbjct: 174 TDNVLYHGFVSDIGIVRSRNVR-QMVKKVQDYNEWLIKQPGYTTNFLNIDDGLAISIK 230

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score =  226 bits (578), Expect = 5e-76
 Identities = 73/185 (39%), Positives = 100/185 (54%), Gaps = 7/185 (3%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 60
           M +     Q + +L+ L  AK+ +EIGVF GYS L  AL +P DGQI A D +     I 
Sbjct: 54  MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIA 113

Query: 61  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 120
               +KAGV  KI+     AL+ L+QL +  +    FD  F+DADK NY  Y+E  + LL
Sbjct: 114 KKYWQKAGVAEKISLRLGPALATLEQLTQ-GKPLPEFDLIFIDADKRNYPRYYEIGLNLL 172

Query: 121 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 180
           + GG+ V DN LW G V   + Q          Q +   NR LA D RV++S + LGDG+
Sbjct: 173 RRGGLMVIDNVLWHGKVTEVDPQEAQT------QVLQQFNRDLAQDERVRISVIPLGDGM 226

Query: 181 TICRR 185
           T+  +
Sbjct: 227 TLALK 231

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score =  226 bits (577), Expect = 1e-75
 Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 15/189 (7%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 60
             +    GQ +A+L+RL  AK+ +EIG   GYS +  A  +P DGQ+  ++ +    ++ 
Sbjct: 45  HDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVA 104

Query: 61  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 120
              ++ AGVD ++   E  AL  L+ L        +FD  F+DADK N  +Y    ++  
Sbjct: 105 RENLQLAGVDQRVTLREGPALQSLESL----GECPAFDLIFIDADKPNNPHYLRWALRYS 160

Query: 121 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRV-----QLSHVA 175
           + G + + DN +  G V  P+            Q +      +  +PR+     Q     
Sbjct: 161 RPGTLIIGDNVVRDGEVVNPQSADER------VQGVRQFIEMMGAEPRLTATALQTVGTK 214

Query: 176 LGDGITICR 184
             DG T+  
Sbjct: 215 GWDGFTLAW 223

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Length = 239

 Score =  225 bits (576), Expect = 2e-75
 Identities = 68/195 (34%), Positives = 101/195 (51%), Gaps = 16/195 (8%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 60
           M +    GQ + +L ++  AK+ IEIG FTGYS L  A  +PEDG+I   DV+ E   + 
Sbjct: 42  MQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVA 101

Query: 61  LPIIKKAGVDHKINFIESEALSVLDQLLK----------YSENEGSFDYAFVDADKDNYC 110
               K+ G+++KI      AL  L  L+           ++    S D  F+DADK+NY 
Sbjct: 102 RKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYP 161

Query: 111 NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQ 170
           NY+  ++KLLK GG+ + DN LW G+VA    Q P          I   N  + +D  V 
Sbjct: 162 NYYPLILKLLKPGGLLIADNVLWDGSVADLSHQEPST------VGIRKFNELVYNDSLVD 215

Query: 171 LSHVALGDGITICRR 185
           +S V + DG+++ R+
Sbjct: 216 VSLVPIADGVSLVRK 230

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score =  224 bits (572), Expect = 4e-75
 Identities = 70/186 (37%), Positives = 107/186 (57%), Gaps = 7/186 (3%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 60
            ++     QL+A L RL+ AKK +++G FTGYS L  AL +P DG++   +V+ +  E+G
Sbjct: 51  SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELG 110

Query: 61  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 120
            P+ ++A  +HKI+     AL  LD+LL  +   G+FD A VDADK+N   Y+ER ++LL
Sbjct: 111 RPLWRQAEAEHKIDLRLKPALETLDELLA-AGEAGTFDVAVVDADKENCSAYYERCLQLL 169

Query: 121 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGI 180
           + GGI      LW G V  P +           + + +LN  +  D RV +S + LGDG+
Sbjct: 170 RPGGILAVLRVLWRGKVLQPPKGDVAA------ECVRNLNERIRRDVRVYISLLPLGDGL 223

Query: 181 TICRRI 186
           T+  +I
Sbjct: 224 TLAFKI 229

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score =  223 bits (570), Expect = 1e-74
 Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 7/178 (3%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
            + +  LL++    + +EIG   GYS +  A  +P +  I +I+ +   YE     +K  
Sbjct: 43  MESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKAL 101

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           G++ +I  +  +AL + ++L    E    FD  F+DA K  Y  + +    +++ GG+ +
Sbjct: 102 GLESRIELLFGDALQLGEKL----ELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLIL 157

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRR 185
            DN L+ G VA  + +   H +      I   N+ L + P+       +GDGI I  +
Sbjct: 158 SDNVLFRGLVAETDIEHKRHKQ--LATKIDTYNQWLLEHPQYDTRIFPVGDGIAISIK 213

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score =  220 bits (564), Expect = 5e-74
 Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 13/190 (6%)

Query: 1   MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG 60
             +    G+ + +L+++  A+  +EIG   GYS +  A  +   G++  ++ + +  +I 
Sbjct: 40  HDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIA 99

Query: 61  LPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLL 120
              I++A ++ ++      AL  L Q+    E    FD+ F+DADK N   Y E  +KL 
Sbjct: 100 RSNIERANLNDRVEVRTGLALDSLQQIEN--EKYEPFDFIFIDADKQNNPAYFEWALKLS 157

Query: 121 KVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRV-----QLSHVA 175
           + G + + DN +  G V       P        Q I      +A +PRV     Q     
Sbjct: 158 RPGTVIIGDNVVREGEVIDNTSNDPR------VQGIRRFYELIAAEPRVSATALQTVGSK 211

Query: 176 LGDGITICRR 185
             DG  +   
Sbjct: 212 GYDGFIMAVV 221

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score =  212 bits (543), Expect = 6e-71
 Identities = 35/179 (19%), Positives = 70/179 (39%), Gaps = 14/179 (7%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           G+L+ +L R+   +  +  G   G +    A  I    ++  ID +R+  E    ++   
Sbjct: 45  GRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN 104

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           G+  ++     + L +          +   D  F+D D  N  +  ER+ + L    + +
Sbjct: 105 GLIDRVELQVGDPLGIAA-------GQRDIDILFMDCDVFNGADVLERMNRCLAKNALLI 157

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
             N L  G+VA   E            A+ + N  L+       + V +G+G+ +  R+
Sbjct: 158 AVNALRRGSVAESHEDP-------ETAALREFNHHLSRRRDFFTTIVPVGNGVLLGYRL 209

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score =  206 bits (526), Expect = 3e-68
 Identities = 39/183 (21%), Positives = 68/183 (37%), Gaps = 15/183 (8%)

Query: 8   GQLMAMLLRLVN---AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII 64
           GQL+  L    N   +   I I    G   L     + ++  +T ID   E       + 
Sbjct: 42  GQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALF 101

Query: 65  KKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 123
           ++AG    ++ F+ S  L V+ +L        S+   F      +     +    LL+ G
Sbjct: 102 REAGYSPSRVRFLLSRPLDVMSRL-----ANDSYQLVFGQVSPMDLKALVDAAWPLLRRG 156

Query: 124 GIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 183
           G  V  + L  GT+A    +  D       QA  D +  +       ++ + LG G+T+ 
Sbjct: 157 GALVLADALLDGTIADQTRKDRDT------QAARDADEYIRSIEGAHVARLPLGAGLTVV 210

Query: 184 RRI 186
            + 
Sbjct: 211 TKA 213

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221

 Score =  188 bits (480), Expect = 3e-61
 Identities = 35/178 (19%), Positives = 71/178 (39%), Gaps = 16/178 (8%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQ+M  ++R  +    +E+G + GYS +  A  +    ++  +++N +   I   ++  A
Sbjct: 47  GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA 106

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM--KLLKVGGI 125
           G+  K+  +   +  ++ QL K   +  + D  F+D  KD Y      L    LL+ G +
Sbjct: 107 GLQDKVTILNGASQDLIPQLKK-KYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 165

Query: 126 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITIC 183
            + DN +  GT                   +   +          L ++ + DG+   
Sbjct: 166 LLADNVIVPGTPDFLA-------------YVRGSSSFECTHYSSYLEYMKVVDGLEKA 210

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 19/138 (13%)

Query: 10  LMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
            M  L         + +E+G     +   + +      +   I+ N   ++       + 
Sbjct: 49  YMHALAAAASSKGGRVLEVGFGMAIAA--SKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ 106

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYH--------ERLMKL 119
              HK+  ++     V   L      +G FD    D    +   +H            +L
Sbjct: 107 T--HKVIPLKGLWEDVAPTLP-----DGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRL 159

Query: 120 LKVGGIAVYDNTLWGGTV 137
           LK GG+  Y N    G +
Sbjct: 160 LKPGGVLTYCNLTSWGEL 177

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 31/165 (18%), Positives = 52/165 (31%), Gaps = 33/165 (20%)

Query: 39  LTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSENEGS 96
           L++ ED  +   D  ++  ++   I+ K  +DH I      S  L +   LL   E    
Sbjct: 22  LSVFEDAFVDNFDC-KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--M 78

Query: 97  FDYAFVDADKDNYCNYHERLMKLLKVGGIA---------VYDNTLWGGTVAVPEEQVPDH 147
                 +  + NY    + LM  +K                 + L+       +  V   
Sbjct: 79  VQKFVEEVLRINY----KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS-- 132

Query: 148 FRGSSRQAILDLNR---SLADDPRVQLSHVALGDG-----ITICR 184
            R    Q  L L +    L     V +    LG G     + +C 
Sbjct: 133 -R---LQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVALDVCL 172

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336

 Score = 38.2 bits (88), Expect = 7e-04
 Identities = 19/122 (15%), Positives = 42/122 (34%), Gaps = 3/122 (2%)

Query: 9   QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG 68
            ++  ++ +      +E G  +G   L  +  +   G++ + +V ++ +++     K   
Sbjct: 95  NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR 154

Query: 69  VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGI 125
              K++ +E    +V       S           DA   D  N           LK GG+
Sbjct: 155 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGV 214

Query: 126 AV 127
             
Sbjct: 215 CA 216

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	100.0
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	100.0
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	100.0
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	100.0
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	100.0
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	100.0
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	100.0
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	100.0
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	100.0
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.98
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.97
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.97
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.96
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.95
3cvo_A	202	Methyltransferase-like protein of unknown functio;	99.84
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	99.82
2o07_A	304	Spermidine synthase; structural genomics, structur	99.77
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.77
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.76
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.76
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.76
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.76
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.75
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.75
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.75
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.74
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.74
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.73
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.73
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.73
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.73
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.72
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.72
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.72
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.71
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.71
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.7
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.7
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.7
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.7
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.7
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.7
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.69
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.69
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.69
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.68
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.68
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.68
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.68
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.68
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.68
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.68
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.68
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.68
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.67
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.67
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.67
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.67
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.67
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.67
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.67
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.67
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.67
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.66
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.66
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.66
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.66
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.66
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.66
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.66
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.65
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.65
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.65
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.64
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.64
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.64
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.64
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.64
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.64
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.64
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.63
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.63
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.63
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.63
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.63
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.62
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.62
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.62
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.62
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.62
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.61
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.61
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.61
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.61
3ocj_A	305	Putative exported protein; structural genomics, PS	99.61
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.61
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.61
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.61
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.61
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.61
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.61
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.6
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.6
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.59
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.59
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.59
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.59
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.59
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.59
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.59
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.59
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.59
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.59
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.59
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.59
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.59
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.59
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.58
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.58
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.58
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.58
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.58
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.58
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.58
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.58
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.58
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.58
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.57
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.57
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.57
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.57
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.57
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.57
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.57
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.56
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.56
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.56
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.56
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.56
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.56
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.55
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.55
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.55
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.55
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.54
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.54
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.54
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.54
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.54
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.54
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.53
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.53
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.53
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.53
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.53
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.53
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.53
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.52
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.52
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.52
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.52
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.52
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.52
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.52
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.52
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.52
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.52
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.52
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.51
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.51
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.51
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.51
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.5
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.5
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.5
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.5
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.5
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.5
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.49
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.49
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.49
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.49
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.49
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.49
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.49
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.48
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.48
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.48
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.48
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.47
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.47
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.47
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.47
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.47
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.47
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.47
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.46
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.45
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.45
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.45
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.45
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.45
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.44
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.44
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.44
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.43
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	99.43
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.43
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.43
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.43
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.43
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.43
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.43
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.43
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.43
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.42
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.42
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.41
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.41
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.41
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.4
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.4
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.37
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.37
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.36
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.36
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.36
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.36
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.35
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.34
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.33
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.33
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.33
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	99.32
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.32
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.31
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.31
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.31
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.3
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.28
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.28
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.28
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.27
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.27
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	99.27
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.26
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.26
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.25
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.23
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.22
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.22
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.21
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.2
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.19
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.19
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.19
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.18
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.17
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.16
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.16
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.16
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.14
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.14
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.11
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.11
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.1
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.07
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.04
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.02
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.02
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.02
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.98
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.98
3khk_A	544	Type I restriction-modification system methylation	98.93
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.87
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.87
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.86
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.84
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.83
3lkd_A	542	Type I restriction-modification system methyltrans	98.82
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.82
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.8
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.75
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.73
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.71
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.65
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.46
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.39
3ufb_A	530	Type I restriction-modification system methyltran	98.2
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.13
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.09
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.06
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.06
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.99
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.94
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.93
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.89
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.86
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.85
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.72
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.6
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.55
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.53
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.47
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.45
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.43
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	97.37
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	97.36
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	97.34
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	97.25
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	97.23
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	97.23
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	97.22
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	97.19
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	97.11
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	97.09
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	97.09
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	97.06
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	97.02
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.01
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	96.99
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.95
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	96.94
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.9
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.9
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	96.87
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.87
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.86
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.86
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.83
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.83
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	96.82
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.82
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.8
3gms_A	340	Putative NADPH:quinone reductase; structural genom	96.78
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	96.76
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	96.76
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.76
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.74
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.72
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.72
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.71
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	96.67
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.65
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.64
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.6
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.49
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	96.48
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.46
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	96.46
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.44
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	96.43
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.4
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	96.39
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.38
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.37
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.33
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	96.28
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.19
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.16
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	96.15
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.15
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	96.13
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	96.08
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	96.07
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.06
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.05
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.98
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.95
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	95.68
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.57
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.53
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.41
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.32
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.13
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.12
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	95.1
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	95.07
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	95.01
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	94.99
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	94.98
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	94.98
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.93
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	94.79
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	94.67
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	94.67
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	94.62
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	94.6
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	94.35
1id1_A	153	Putative potassium channel protein; RCK domain, E.	94.26
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	94.17
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	94.16
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.07
3me5_A	482	Cytosine-specific methyltransferase; structural ge	94.05
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.01
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.0
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.98
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	93.98
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	93.93
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	93.6
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	93.51
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	93.41
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	93.27
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	93.09
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	92.98
3c85_A	183	Putative glutathione-regulated potassium-efflux S	92.97
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.97
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	92.9
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	92.88
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	92.83
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	92.83
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	92.56
4ezb_A	317	Uncharacterized conserved protein; structural geno	92.53
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	92.46
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.3
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	92.23
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	92.21
1lnq_A	336	MTHK channels, potassium channel related protein;	92.19
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	92.15
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	92.01
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	92.0
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	91.94
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	91.91
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	91.84
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	91.65
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	91.51
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	91.34
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	91.29
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	91.01
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	90.99
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	90.97
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	90.94
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	90.71
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	90.58
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	90.57
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	90.34
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	90.33
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	90.28
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	90.05
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	90.0
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	89.86
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	89.6
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	89.54
3t8y_A	164	CHEB, chemotaxis response regulator protein-glutam	89.4
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	89.09
4g65_A	461	TRK system potassium uptake protein TRKA; structur	89.0
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	88.92
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	88.83
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	88.8
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	88.77
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	88.74
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	88.62
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	88.47
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	88.31
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	88.19
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	88.14
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	88.03
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	88.0
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	87.95
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	87.91
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	87.79
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	87.6
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	87.56
4g65_A	461	TRK system potassium uptake protein TRKA; structur	87.52
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	87.11
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	86.96
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	86.95
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	86.93
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	86.73
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	86.66
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	86.56
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	86.45
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	86.15
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	86.08
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	86.01
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	85.99
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	85.85
3trk_A	324	Nonstructural polyprotein; hydrolase; 2.40A {Chiku	85.66
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	85.61
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	85.59
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	85.58
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	85.55
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	85.41
3to5_A	134	CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p	85.39
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	85.23
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	85.14
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	85.13
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	85.1
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	85.03
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	85.0
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	84.99
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	84.92
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	84.86
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	84.77
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	84.73
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	84.7
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	84.67
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	84.66
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	84.53

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=100.00  E-value=3.4e-34  Score=217.49  Aligned_cols=180  Identities=38%  Similarity=0.618  Sum_probs=160.4

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |++++.+++++..++...++++|||||||+|+++++++..++++++|+++|+++++++.|+++++..++.++++++++|+
T Consensus        42 ~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  121 (242)
T 3r3h_A           42 MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA  121 (242)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            57889999999999999999999999999999999999988768999999999999999999999999988899999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHH
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  160 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+... +..++||+||+|+....+..+++.+.++|+|||+|+++|++|.|.+.++.....      ....+++|+
T Consensus       122 ~~~l~~~~~~-~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~------~~~~~~~~~  194 (242)
T 3r3h_A          122 LDTLHSLLNE-GGEHQFDFIFIDADKTNYLNYYELALKLVTPKGLIAIDNIFWDGKVIDPNDTSG------QTREIKKLN  194 (242)
T ss_dssp             HHHHHHHHHH-HCSSCEEEEEEESCGGGHHHHHHHHHHHEEEEEEEEEECSSSSSCSSCTTCCCH------HHHHHHHHH
T ss_pred             HHHHHHHhhc-cCCCCEeEEEEcCChHHhHHHHHHHHHhcCCCeEEEEECCccCCcccCccccCh------HHHHHHHHH
Confidence            9877764221 013789999999998889999999999999999999999999998877653321      556799999


Q ss_pred             HHhhcCCCeEEEeeecCCceEEEEEcC
Q 029803          161 RSLADDPRVQLSHVALGDGITICRRIF  187 (187)
Q Consensus       161 ~~l~~~~~~~~~~lp~~~G~~~~~~~~  187 (187)
                      +.+..+++++++++|+++|+.+++|++
T Consensus       195 ~~l~~~~~~~~~~lp~~dG~~~~~k~~  221 (242)
T 3r3h_A          195 QVIKNDSRVFVSLLAIADGMFLVQPIA  221 (242)
T ss_dssp             HHHHTCCSEEEEEESSSSCEEEEEEC-
T ss_pred             HHHhhCCCEEEEEEEccCceEEEEEcC
Confidence            999999999999999999999999985

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=100.00  E-value=2.2e-33  Score=212.37  Aligned_cols=186  Identities=67%  Similarity=1.137  Sum_probs=162.7

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |++.+.+++++..++...++++|||||||+|++++++++.++++++++++|+++++++.++++++..++.++++++.+|+
T Consensus        52 ~~~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  131 (237)
T 3c3y_A           52 MSTSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDA  131 (237)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            46789999999999999999999999999999999999998768999999999999999999999999887899999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHH
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  160 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+...+...++||+||+|+++..+..+++.+.++|+|||++++++++|.|.+..+.+......+. ....+++|+
T Consensus       132 ~~~l~~l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pGG~lv~d~~~~~g~~~~~~~~~~~~~r~-~~~~i~~~~  210 (237)
T 3c3y_A          132 MLALDNLLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVGGIVAYDNTLWGGTVAQPESEVPDFMKE-NREAVIELN  210 (237)
T ss_dssp             HHHHHHHHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECTTGGGGGGSCGGGSCGGGHH-HHHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCCeEEEEecCCcCCccCCCcccchhhHHH-HHHHHHHHH
Confidence            9887765322111368999999999889999999999999999999999999999887764333333344 567799999


Q ss_pred             HHhhcCCCeEEEeeecCCceEEEEEcC
Q 029803          161 RSLADDPRVQLSHVALGDGITICRRIF  187 (187)
Q Consensus       161 ~~l~~~~~~~~~~lp~~~G~~~~~~~~  187 (187)
                      +.+..+++++++.+|+++|+.+++|+.
T Consensus       211 ~~l~~~~~~~~~~lp~~dG~~~~~~~~  237 (237)
T 3c3y_A          211 KLLAADPRIEIVHLPLGDGITFCRRLY  237 (237)
T ss_dssp             HHHHHCTTEEEEEECSTTCEEEEEECC
T ss_pred             HHHhcCCCeEEEEEEeCCceEEEEEcC
Confidence            999999999999999999999999973

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=100.00  E-value=1.4e-33  Score=211.34  Aligned_cols=174  Identities=22%  Similarity=0.327  Sum_probs=156.4

Q ss_pred             CCcHHHHHHHHHHHHHcCCC---EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEE
Q 029803            2 LLLTIHGQLMAMLLRLVNAK---KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIE   77 (187)
Q Consensus         2 ~~~~~~~~ll~~l~~~~~~~---~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~   77 (187)
                      .+.+.+++++..++...+++   +|||||||+|+++++++..++++++|+++|+++++++.|+++++..++. +++++++
T Consensus        36 ~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~  115 (221)
T 3dr5_A           36 APDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLL  115 (221)
T ss_dssp             CCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEEC
T ss_pred             CCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEE
Confidence            35789999999999998888   9999999999999999999877899999999999999999999999988 7899999


Q ss_pred             cchHHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHH
Q 029803           78 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL  157 (187)
Q Consensus        78 ~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (187)
                      +|+.+.++.+     ..++||+||+|+....+..+++.+.++|+|||+++++|++|.|.+.++....     . ....++
T Consensus       116 gda~~~l~~~-----~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~dn~~~~g~v~~~~~~~-----~-~~~~~~  184 (221)
T 3dr5_A          116 SRPLDVMSRL-----ANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKD-----R-DTQAAR  184 (221)
T ss_dssp             SCHHHHGGGS-----CTTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEETTTTGGGTCSCSSCCC-----H-HHHHHH
T ss_pred             cCHHHHHHHh-----cCCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEEeCCCCCCcCCCCCCCC-----h-HHHHHH
Confidence            9999876653     1478999999999889999999999999999999999999999887764321     1 455789


Q ss_pred             HHHHHhhcCCCeEEEeeecCCceEEEEEc
Q 029803          158 DLNRSLADDPRVQLSHVALGDGITICRRI  186 (187)
Q Consensus       158 ~~~~~l~~~~~~~~~~lp~~~G~~~~~~~  186 (187)
                      +|++.+.++++++++++|+++|+++++|-
T Consensus       185 ~~~~~l~~~~~~~~~~lp~gdGl~~~~~~  213 (221)
T 3dr5_A          185 DADEYIRSIEGAHVARLPLGAGLTVVTKA  213 (221)
T ss_dssp             HHHHHHTTCTTEEEEEESSTTCEEEEEEC
T ss_pred             HHHHHHhhCCCeeEEEeeccchHHHHHHH
Confidence            99999999999999999999999999973

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=100.00  E-value=4.9e-33  Score=211.70  Aligned_cols=186  Identities=59%  Similarity=1.007  Sum_probs=161.6

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |++.+.+++++..++...++++|||||||+|+++++++..++++++|+++|+++++++.|+++++..++.++++++.+|+
T Consensus        61 ~~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda  140 (247)
T 1sui_A           61 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  140 (247)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             CCcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH
Confidence            56789999999999999999999999999999999999998767999999999999999999999999878899999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCc-ccchHHHHHHH
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHF-RGSSRQAILDL  159 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  159 (187)
                      .+.++.+...+...++||+||+|+....+..+++.+.++|+|||+|++++++|.|.+..+........ +. ....+++|
T Consensus       141 ~~~l~~l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g~v~~~~~~~~~~~~~~-~~~~i~~~  219 (247)
T 1sui_A          141 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRY-YRDFVLEL  219 (247)
T ss_dssp             HHHHHHHHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEECTTGGGGGGCCTTSCCCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEecCCcCCcccCCCccchhhhhhH-HHHHHHHH
Confidence            98777653210013689999999988889999999999999999999999999999887654332211 33 46679999


Q ss_pred             HHHhhcCCCeEEEeeecCCceEEEEEcC
Q 029803          160 NRSLADDPRVQLSHVALGDGITICRRIF  187 (187)
Q Consensus       160 ~~~l~~~~~~~~~~lp~~~G~~~~~~~~  187 (187)
                      ++.+..+++++...+|+++|+++++|+.
T Consensus       220 ~~~l~~~~~~~~~~lp~~dG~~l~~k~~  247 (247)
T 1sui_A          220 NKALAVDPRIEICMLPVGDGITICRRIK  247 (247)
T ss_dssp             HHHHHTCTTBCCEEECSTTCEEEECBCC
T ss_pred             HHHHhhCCCeEEEEEecCCccEEEEEcC
Confidence            9999999999999999999999999873

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=100.00  E-value=3e-31  Score=198.40  Aligned_cols=179  Identities=24%  Similarity=0.390  Sum_probs=158.9

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |++++..++++..++...++.+|||||||+|+++.+++..++++++|+++|+++++++.+++++...++.++++++++|+
T Consensus        40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  119 (223)
T 3duw_A           40 HDVSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLA  119 (223)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            56789999999999999999999999999999999999998767899999999999999999999999988899999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHH
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  160 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+...  ..++||+||+|+....+..+++.+.++|+|||+++++++++.|.+..+.... .     ....+++|+
T Consensus       120 ~~~~~~~~~~--~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~-~-----~~~~~~~~~  191 (223)
T 3duw_A          120 LDSLQQIENE--KYEPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNVVREGEVIDNTSND-P-----RVQGIRRFY  191 (223)
T ss_dssp             HHHHHHHHHT--TCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESCSGGGGGGCTTCCC-H-----HHHHHHHHH
T ss_pred             HHHHHHHHhc--CCCCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccc-h-----HHHHHHHHH
Confidence            8877665322  1257999999998888899999999999999999999999999877764321 1     556799999


Q ss_pred             HHhhcCCCeEEEeeec-----CCceEEEEEcC
Q 029803          161 RSLADDPRVQLSHVAL-----GDGITICRRIF  187 (187)
Q Consensus       161 ~~l~~~~~~~~~~lp~-----~~G~~~~~~~~  187 (187)
                      +.+..+++++++++|+     ++|+.+++++|
T Consensus       192 ~~l~~~~~~~~~~~p~~~~~~~dG~~~~~~~~  223 (223)
T 3duw_A          192 ELIAAEPRVSATALQTVGSKGYDGFIMAVVKE  223 (223)
T ss_dssp             HHHHHCTTEEEEEEEEEETTEEEEEEEEEEC-
T ss_pred             HHHhhCCCeEEEEEeccCCCCCCeeEEEEEeC
Confidence            9999999999999999     99999999986

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=100.00  E-value=2e-31  Score=201.04  Aligned_cols=179  Identities=41%  Similarity=0.628  Sum_probs=158.4

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |.+.+.+++++..++...++++|||||||+|+++.+++..++++++++++|+++++++.|+++++..++.++++++.+|+
T Consensus        54 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~  133 (232)
T 3cbg_A           54 MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPA  133 (232)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cCcCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            56889999999999999999999999999999999999988767899999999999999999999988877899999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHH
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  160 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+... ...++||+||+|+....+..+++++.++|+|||+++++++.|.|.+.++...     .. ....+++|+
T Consensus       134 ~~~l~~l~~~-~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~~~~-----~~-~~~~~~~~~  206 (232)
T 3cbg_A          134 LATLEQLTQG-KPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQ-----EA-QTQVLQQFN  206 (232)
T ss_dssp             HHHHHHHHTS-SSCCCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEECTTGGGGGGCSSCC-----SH-HHHHHHHHH
T ss_pred             HHHHHHHHhc-CCCCCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeCCCcCCccCCcccC-----Ch-HHHHHHHHH
Confidence            8877665321 0016899999999888899999999999999999999999999988766422     11 667899999


Q ss_pred             HHhhcCCCeEEEeeecCCceEEEEEc
Q 029803          161 RSLADDPRVQLSHVALGDGITICRRI  186 (187)
Q Consensus       161 ~~l~~~~~~~~~~lp~~~G~~~~~~~  186 (187)
                      +.+..+++++++.+|+++|+.+++|+
T Consensus       207 ~~l~~~~~~~~~~lp~~dG~~~~~~~  232 (232)
T 3cbg_A          207 RDLAQDERVRISVIPLGDGMTLALKK  232 (232)
T ss_dssp             HHHTTCTTEEEEEECSBTCEEEEEEC
T ss_pred             HHHhhCCCeEEEEEEcCCeEEEEEeC
Confidence            99999999999999999999999985

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=100.00  E-value=1.9e-31  Score=199.66  Aligned_cols=179  Identities=36%  Similarity=0.559  Sum_probs=158.6

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |++++..++++..++...++.+|||||||+|.++.+++..++++++|+++|+++++++.++++++..++.++++++++|+
T Consensus        46 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  125 (225)
T 3tr6_A           46 MQTAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPA  125 (225)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCH
Confidence            46788999999999999999999999999999999999988767899999999999999999999999888899999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHH
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  160 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+... +..++||+||+++....+..+++.+.++|+|||+++++|++|.|.+..+.... .     ....+++|+
T Consensus       126 ~~~~~~~~~~-~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~~-~-----~~~~~~~~~  198 (225)
T 3tr6_A          126 KDTLAELIHA-GQAWQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDNVLRRGQVADEENQS-E-----NNQLIRLFN  198 (225)
T ss_dssp             HHHHHHHHTT-TCTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCCC-H-----HHHHHHHHH
T ss_pred             HHHHHHhhhc-cCCCCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeCCCcCCcccCccccC-h-----HHHHHHHHH
Confidence            8877665311 01168999999998888999999999999999999999999999887765331 1     456799999


Q ss_pred             HHhhcCCCeEEEeeecCCceEEEEEc
Q 029803          161 RSLADDPRVQLSHVALGDGITICRRI  186 (187)
Q Consensus       161 ~~l~~~~~~~~~~lp~~~G~~~~~~~  186 (187)
                      +.+..+++++++.+|+++|+.+++|+
T Consensus       199 ~~l~~~~~~~~~~lp~~dG~~~~~k~  224 (225)
T 3tr6_A          199 QKVYKDERVDMILIPIGDGLTLARKK  224 (225)
T ss_dssp             HHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHhcCCCeEEEEEEcCCccEEEEEC
Confidence            99999999999999999999999986

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=100.00  E-value=7.6e-31  Score=199.66  Aligned_cols=177  Identities=28%  Similarity=0.481  Sum_probs=157.8

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |++++..++++..++...++++|||||||+|+++..++..++++++|+++|+++++++.|+++++..++.++++++.+|+
T Consensus        45 ~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~  124 (248)
T 3tfw_A           45 HDVAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPA  124 (248)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            46789999999999999999999999999999999999988767899999999999999999999999888899999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHH
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  160 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+.    ..++||+||+|+....+..+++.+.++|+|||+|+++++++.|.+..+....     . ....+++|+
T Consensus       125 ~~~l~~~~----~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~g~v~~~~~~~-----~-~~~~~~~~~  194 (248)
T 3tfw_A          125 LQSLESLG----ECPAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNVVRDGEVVNPQSAD-----E-RVQGVRQFI  194 (248)
T ss_dssp             HHHHHTCC----SCCCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECCSGGGGGGCTTCCC-----H-HHHHHHHHH
T ss_pred             HHHHHhcC----CCCCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCCCcCCcccCccccc-----h-HHHHHHHHH
Confidence            88776541    1358999999998888999999999999999999999999999887764321     1 667799999


Q ss_pred             HHhhcCCCeEEEee-ecC----CceEEEEEcC
Q 029803          161 RSLADDPRVQLSHV-ALG----DGITICRRIF  187 (187)
Q Consensus       161 ~~l~~~~~~~~~~l-p~~----~G~~~~~~~~  187 (187)
                      +.+..+++++.+.+ |++    +|+.++++++
T Consensus       195 ~~l~~~~~~~~~~l~~~g~~~~DG~~i~~~~~  226 (248)
T 3tfw_A          195 EMMGAEPRLTATALQTVGTKGWDGFTLAWVNA  226 (248)
T ss_dssp             HHHHHCTTEEEEEEEECSTTCSEEEEEEEECC
T ss_pred             HHHhhCCCEEEEEeecCCCCCCCeeEEEEEeC
Confidence            99999999999888 676    9999999985

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=100.00  E-value=2.1e-31  Score=200.79  Aligned_cols=176  Identities=24%  Similarity=0.343  Sum_probs=155.5

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      +.+..++++..++...++.+|||||||+|+++.+++...+ +.+|+++|+++++++.|+++++..++.++++++.+|+.+
T Consensus        55 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  133 (232)
T 3ntv_A           55 VDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALE  133 (232)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGG
T ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHH
Confidence            4678899999999999999999999999999999999666 789999999999999999999999988789999999988


Q ss_pred             HHH-HHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHH
Q 029803           83 VLD-QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNR  161 (187)
Q Consensus        83 ~~~-~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (187)
                      .++ .+      .++||+||++.....+..+++.+.++|+|||+++++|++|.|.+.++....++..+. ....+++|++
T Consensus       134 ~~~~~~------~~~fD~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~d~~~~~g~v~~~~~~~~~~~~~-~~~~~~~~~~  206 (232)
T 3ntv_A          134 QFENVN------DKVYDMIFIDAAKAQSKKFFEIYTPLLKHQGLVITDNVLYHGFVSDIGIVRSRNVRQ-MVKKVQDYNE  206 (232)
T ss_dssp             CHHHHT------TSCEEEEEEETTSSSHHHHHHHHGGGEEEEEEEEEECTTGGGGGGCGGGGGCHHHHH-HHHHHHHHHH
T ss_pred             HHHhhc------cCCccEEEEcCcHHHHHHHHHHHHHhcCCCeEEEEeeCCcCccccCcccccchhhhH-HHHHHHHHHH
Confidence            766 43      478999999999889999999999999999999999999999887764311222222 4567999999


Q ss_pred             HhhcCCCeEEEeeecCCceEEEEEc
Q 029803          162 SLADDPRVQLSHVALGDGITICRRI  186 (187)
Q Consensus       162 ~l~~~~~~~~~~lp~~~G~~~~~~~  186 (187)
                      .+..+++++++.+|+++|+.+++|+
T Consensus       207 ~l~~~~~~~~~~lp~~dG~~i~~k~  231 (232)
T 3ntv_A          207 WLIKQPGYTTNFLNIDDGLAISIKG  231 (232)
T ss_dssp             HHHTCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHhcCCCeEEEEEEcCCceEEEEEC
Confidence            9999999999999999999999986

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.98  E-value=2.5e-30  Score=194.08  Aligned_cols=179  Identities=39%  Similarity=0.658  Sum_probs=157.3

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |.+++..++++..++...++++|||||||+|+++..++..++++++++++|+++++++.++++++..++.++++++++|+
T Consensus        51 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~  130 (229)
T 2avd_A           51 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  130 (229)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCH
Confidence            45778899999999999999999999999999999999988767899999999999999999999988877899999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHH
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  160 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+... ...++||+||+|.....+..+++.+.++|+|||++++++++|.|.+.++...     .. ....+++|+
T Consensus       131 ~~~~~~~~~~-~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~-----~~-~~~~~~~~~  203 (229)
T 2avd_A          131 LETLDELLAA-GEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKG-----DV-AAECVRNLN  203 (229)
T ss_dssp             HHHHHHHHHT-TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTT-----CH-HHHHHHHHH
T ss_pred             HHHHHHHHhc-CCCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEECCCcCCcccCcccC-----Ch-HHHHHHHHH
Confidence            8877665321 0116899999999888889999999999999999999999999988765322     11 667799999


Q ss_pred             HHhhcCCCeEEEeeecCCceEEEEEc
Q 029803          161 RSLADDPRVQLSHVALGDGITICRRI  186 (187)
Q Consensus       161 ~~l~~~~~~~~~~lp~~~G~~~~~~~  186 (187)
                      +.+..+++++++.+|+++|+.+++|+
T Consensus       204 ~~l~~~~~~~~~~lp~~dGl~~~~k~  229 (229)
T 2avd_A          204 ERIRRDVRVYISLLPLGDGLTLAFKI  229 (229)
T ss_dssp             HHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHhhCCCEEEEEEecCCceEEEEEC
Confidence            99999999999999999999999985

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.97  E-value=1.6e-28  Score=185.63  Aligned_cols=180  Identities=38%  Similarity=0.568  Sum_probs=156.6

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |.+.+..++++..++...++.+|||||||+|+++..++..++++++|+++|+++++++.+++++...++.++++++.+|+
T Consensus        42 ~~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~  121 (239)
T 2hnk_A           42 MQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSA  121 (239)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH
Confidence            56789999999999999999999999999999999999988767899999999999999999999988877899999999


Q ss_pred             HHHHHHHhh--------cccCC--CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCccc
Q 029803           81 LSVLDQLLK--------YSENE--GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRG  150 (187)
Q Consensus        81 ~~~~~~~~~--------~~~~~--~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~  150 (187)
                      .+.++.+..        ++...  ++||+||++.....+..+++.+.++|+|||++++++++|.|.+.++...     ..
T Consensus       122 ~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~~-----~~  196 (239)
T 2hnk_A          122 LETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQ-----EP  196 (239)
T ss_dssp             HHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEECSSGGGGGGCTTCC-----CH
T ss_pred             HHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEccccCCcccCcccc-----ch
Confidence            887665421        00111  6899999998888889999999999999999999999999987755422     11


Q ss_pred             chHHHHHHHHHHhhcCCCeEEEeeecCCceEEEEEc
Q 029803          151 SSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  186 (187)
Q Consensus       151 ~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~~~~~~  186 (187)
                       ....+++|++.+..++++.+.++|+++|+.+++|+
T Consensus       197 -~~~~~~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~  231 (239)
T 2hnk_A          197 -STVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKR  231 (239)
T ss_dssp             -HHHHHHHHHHHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             -HHHHHHHHHHHHhhCCCeEEEEEEcCCceEeeeeh
Confidence             66779999999999999999999999999999986

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.97  E-value=6.9e-29  Score=184.12  Aligned_cols=170  Identities=20%  Similarity=0.289  Sum_probs=144.9

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      +.+..++++..++...++.+|||||||+|+++.+++..++++++|+++|+++++++.++++++..++.++++++++|+.+
T Consensus        40 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  119 (210)
T 3c3p_A           40 VDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLG  119 (210)
T ss_dssp             CCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHH
Confidence            56788899999988889999999999999999999998876789999999999999999999988887789999999988


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHH
Q 029803           83 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRS  162 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (187)
                      .++.+      .+ ||+||++.....+..+++.+.++|+|||++++++++|.|.+.++  ....     ....+++|++.
T Consensus       120 ~~~~~------~~-fD~v~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~g~~~~~--~~~~-----~~~~~~~~~~~  185 (210)
T 3c3p_A          120 IAAGQ------RD-IDILFMDCDVFNGADVLERMNRCLAKNALLIAVNALRRGSVAES--HEDP-----ETAALREFNHH  185 (210)
T ss_dssp             HHTTC------CS-EEEEEEETTTSCHHHHHHHHGGGEEEEEEEEEESSSSCC-------------------CCCHHHHH
T ss_pred             HhccC------CC-CCEEEEcCChhhhHHHHHHHHHhcCCCeEEEEECccccCcccCc--ccch-----HHHHHHHHHHH
Confidence            66543      35 99999998888899999999999999999999999998876633  1112     33448999999


Q ss_pred             hhcCCCeEEEeeecCCceEEEEEc
Q 029803          163 LADDPRVQLSHVALGDGITICRRI  186 (187)
Q Consensus       163 l~~~~~~~~~~lp~~~G~~~~~~~  186 (187)
                      +..++++....+|+++|+.+++|+
T Consensus       186 l~~~~~~~~~~~p~~~G~~~~~~~  209 (210)
T 3c3p_A          186 LSRRRDFFTTIVPVGNGVLLGYRL  209 (210)
T ss_dssp             HTTCTTEEEEEECSTTCEEEEEEC
T ss_pred             HhhCCCeEEEEEecCCceEEEEeC
Confidence            999999999999999999999986

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.96  E-value=5.6e-28  Score=180.69  Aligned_cols=164  Identities=22%  Similarity=0.364  Sum_probs=141.7

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |++++..++++..++...++++|||||||+|.+++++++.++++++|+++|+++++++.|+++++..++.++++++++|+
T Consensus        40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  119 (221)
T 3u81_A           40 MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGAS  119 (221)
T ss_dssp             GGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCH
Confidence            56889999999999999999999999999999999999987668999999999999999999999999888899999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHH---HHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHH
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCN---YHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAIL  157 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~---~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (187)
                      .+.++.+... ...++||+||+|+....+..   +++.+ ++|+|||+++++++.+.+                    .+
T Consensus       120 ~~~l~~~~~~-~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~~~--------------------~~  177 (221)
T 3u81_A          120 QDLIPQLKKK-YDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIVPG--------------------TP  177 (221)
T ss_dssp             HHHGGGTTTT-SCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCCCC--------------------CH
T ss_pred             HHHHHHHHHh-cCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCCcc--------------------hH
Confidence            8876654210 01268999999987777664   45555 999999999999998755                    47


Q ss_pred             HHHHHhhcCCCeEEEeee-------cCCceEEEEEc
Q 029803          158 DLNRSLADDPRVQLSHVA-------LGDGITICRRI  186 (187)
Q Consensus       158 ~~~~~l~~~~~~~~~~lp-------~~~G~~~~~~~  186 (187)
                      +|.+.+.++++++...+|       +++|+.+++++
T Consensus       178 ~~~~~l~~~~~~~~~~~~~~~~~~~~~dG~~~~~~~  213 (221)
T 3u81_A          178 DFLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  213 (221)
T ss_dssp             HHHHHHHHCTTEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred             HHHHHHhhCCCceEEEcccccccCCCCCceEEEEEe
Confidence            888999999999999998       79999999986

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.95  E-value=5.8e-27  Score=176.34  Aligned_cols=178  Identities=25%  Similarity=0.408  Sum_probs=138.1

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      +.+..++++..++...++.+|||||||+|..+..++..++ +.+|+++|+++++++.|++++...++.++++++.+|+.+
T Consensus        38 ~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  116 (233)
T 2gpy_A           38 MDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQ  116 (233)
T ss_dssp             CCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGG
T ss_pred             cCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHH
Confidence            5678889999999999999999999999999999999987 789999999999999999999998887789999999987


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHH
Q 029803           83 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRS  162 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (187)
                      .++...    ..++||+|+++.....+..+++.+.++|+|||+++++++++.|.+..+.. ..+..+. ....+++|++.
T Consensus       117 ~~~~~~----~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~g~~~~~~~-~~~~~~~-~~~~~~~~~~~  190 (233)
T 2gpy_A          117 LGEKLE----LYPLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDNVLFRGLVAETDI-EHKRHKQ-LATKIDTYNQW  190 (233)
T ss_dssp             SHHHHT----TSCCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEETTTC---------------------------CT
T ss_pred             HHHhcc----cCCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEcCCcCCccCCccc-cccchhH-HHHHHHHHHHH
Confidence            655431    13689999999877788899999999999999999999999886654321 1111111 33457888899


Q ss_pred             hhcCCCeEEEeeecCCceEEEEEcC
Q 029803          163 LADDPRVQLSHVALGDGITICRRIF  187 (187)
Q Consensus       163 l~~~~~~~~~~lp~~~G~~~~~~~~  187 (187)
                      +..++++.+.++|+++|+.+++|++
T Consensus       191 l~~~~~~~~~~~p~~dG~~~~~~~~  215 (233)
T 2gpy_A          191 LLEHPQYDTRIFPVGDGIAISIKRE  215 (233)
T ss_dssp             TTTCTTEEEEEECSTTCEEEEEEC-
T ss_pred             HHhCCCeEEEEEEcCCeEEEEEEcC
Confidence            9999999999999999999999864

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=99.84  E-value=7.2e-20  Score=134.12  Aligned_cols=148  Identities=12%  Similarity=0.069  Sum_probs=114.7

Q ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC--CCcEEEEEcc
Q 029803            2 LLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESE   79 (187)
Q Consensus         2 ~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d   79 (187)
                      .+++.++++|+.  ...++++||||||  |++++++|+. + +++|+++|.+++..+.++++++.+++  .++++++.+|
T Consensus        15 ~v~~~~~~~L~~--~l~~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gd   88 (202)
T 3cvo_A           15 TMPPAEAEALRM--AYEEAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTD   88 (202)
T ss_dssp             CSCHHHHHHHHH--HHHHCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECC
T ss_pred             cCCHHHHHHHHH--HhhCCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence            578899999998  5568899999998  6899999984 4 78999999999999999999999998  7899999999


Q ss_pred             hHHH--------------HHHH----hhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCC
Q 029803           80 ALSV--------------LDQL----LKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPE  141 (187)
Q Consensus        80 ~~~~--------------~~~~----~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~  141 (187)
                      +.+.              ++.+    ... ...++||+||+|+.+..  .++..++++|+|||+|+++|+++..+.    
T Consensus        89 a~~~~~wg~p~~~~~~~~l~~~~~~i~~~-~~~~~fDlIfIDg~k~~--~~~~~~l~~l~~GG~Iv~DNv~~r~~y----  161 (202)
T 3cvo_A           89 IGPTGDWGHPVSDAKWRSYPDYPLAVWRT-EGFRHPDVVLVDGRFRV--GCALATAFSITRPVTLLFDDYSQRRWQ----  161 (202)
T ss_dssp             CSSBCGGGCBSSSTTGGGTTHHHHGGGGC-TTCCCCSEEEECSSSHH--HHHHHHHHHCSSCEEEEETTGGGCSSG----
T ss_pred             chhhhcccccccchhhhhHHHHhhhhhcc-ccCCCCCEEEEeCCCch--hHHHHHHHhcCCCeEEEEeCCcCCcch----
Confidence            6432              2211    111 11368999999997653  667778899999999999997654421    


Q ss_pred             CCCCCCcccchHHHHHHHHHHhhcCCCeEEEee
Q 029803          142 EQVPDHFRGSSRQAILDLNRSLADDPRVQLSHV  174 (187)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l  174 (187)
                                  ..+.+|.+.+...++.....+
T Consensus       162 ------------~~v~~~~~~~~~~~~~a~f~~  182 (202)
T 3cvo_A          162 ------------HQVEEFLGAPLMIGRLAAFQV  182 (202)
T ss_dssp             ------------GGGHHHHCCCEEETTEEEEEE
T ss_pred             ------------HHHHHHHhHHhhcCceEEEEe
Confidence                        126788777777777554443

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=99.82  E-value=1.2e-19  Score=139.53  Aligned_cols=158  Identities=12%  Similarity=0.088  Sum_probs=124.1

Q ss_pred             cHHHHHHHHHHHHH----cCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCc---------------------
Q 029803            4 LTIHGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNR---------------------   54 (187)
Q Consensus         4 ~~~~~~ll~~l~~~----~~~~~vLeiG~g~G~~~~~la~~~~----~~~~v~~iD~~~---------------------   54 (187)
                      ......+|+.+++.    ..|..|||+|++.|+++++++..++    ++.+|+++|..+                     
T Consensus        87 ~~~r~~~L~~l~~~v~~~~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~  166 (282)
T 2wk1_A           87 GIKRLENIRQCVEDVIGNNVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRR  166 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGG
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccc
Confidence            34556677777664    5689999999999999999988764    368999999632                     


Q ss_pred             -----chHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-cccHHHHHHHHhccCCCeEEE
Q 029803           55 -----ETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        55 -----~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-~~~~~~~~~~~~~L~~gG~lv  127 (187)
                           ..++.+++++++.++. ++++++.|++.+.++.+     ..++||+||+|++. +.+..+++.++++|+|||+|+
T Consensus       167 ~~~~~~~~~~ar~n~~~~gl~~~~I~li~Gda~etL~~~-----~~~~~d~vfIDaD~y~~~~~~Le~~~p~L~pGGiIv  241 (282)
T 2wk1_A          167 NSVLAVSEEEVRRNFRNYDLLDEQVRFLPGWFKDTLPTA-----PIDTLAVLRMDGDLYESTWDTLTNLYPKVSVGGYVI  241 (282)
T ss_dssp             HHHHCCCHHHHHHHHHHTTCCSTTEEEEESCHHHHSTTC-----CCCCEEEEEECCCSHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             cccchhHHHHHHHHHHHcCCCcCceEEEEeCHHHHHhhC-----CCCCEEEEEEcCCccccHHHHHHHHHhhcCCCEEEE
Confidence                 1467799999999984 88999999999988764     24689999999986 457789999999999999999


Q ss_pred             EeCCCC-CccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEeeecCCceEEEEEc
Q 029803          128 YDNTLW-GGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI  186 (187)
Q Consensus       128 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~~~~~~  186 (187)
                      +||+.+ .|                ...++++|++.    .++...+++++.+..+-+|.
T Consensus       242 ~DD~~~~~G----------------~~~Av~Ef~~~----~~i~~~i~~~~~~~v~~rk~  281 (282)
T 2wk1_A          242 VDDYMMCPP----------------CKDAVDEYRAK----FDIADELITIDRDGVYWQRT  281 (282)
T ss_dssp             ESSCTTCHH----------------HHHHHHHHHHH----TTCCSCCEECSSSCEEEECC
T ss_pred             EcCCCCCHH----------------HHHHHHHHHHh----cCCceEEEEecCEEEEEEeC
Confidence            999864 22                55566666555    34666788888877776663

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.77  E-value=1.6e-18  Score=135.32  Aligned_cols=149  Identities=15%  Similarity=0.218  Sum_probs=114.3

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh--cCC-CCcEEEEEcchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AGV-DHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~-~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ..++++|||||||+|..+..+++..+ ..+++++|+++++++.|++++..  .++ .++++++.+|+.+.++..      
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~------  165 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN------  165 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC------
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhC------
Confidence            35788999999999999999998754 68999999999999999999875  343 467999999998876542      


Q ss_pred             CCceeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEeCC-CCCccccCCCCCCCCCcccchHHHHHHHHHHhhc
Q 029803           94 EGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDNT-LWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLAD  165 (187)
Q Consensus        94 ~~~~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  165 (187)
                      .++||+|++|....       ....+++.+.++|+|||+++++.. .|...             . ....+.++++.+..
T Consensus       166 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~-------------~-~~~~~~~~l~~~f~  231 (304)
T 2o07_A          166 QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGECQWLHL-------------D-LIKEMRQFCQSLFP  231 (304)
T ss_dssp             SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEECTTTCH-------------H-HHHHHHHHHHHHCS
T ss_pred             CCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecCCcccch-------------H-HHHHHHHHHHHhCC
Confidence            47899999996432       235689999999999999999763 23210             1 44557788888877


Q ss_pred             CCCeEEEeeec---C-CceEEEEEc
Q 029803          166 DPRVQLSHVAL---G-DGITICRRI  186 (187)
Q Consensus       166 ~~~~~~~~lp~---~-~G~~~~~~~  186 (187)
                      +.++....+|.   + .|+.+++|.
T Consensus       232 ~v~~~~~~vP~~~~g~~g~~~as~~  256 (304)
T 2o07_A          232 VVAYAYCTIPTYPSGQIGFMLCSKN  256 (304)
T ss_dssp             EEEEEEEECTTSGGGEEEEEEEESS
T ss_pred             CceeEEEEeccccCcceEEEEEeCC
Confidence            77777677775   2 578888763

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.77  E-value=3.6e-18  Score=133.75  Aligned_cols=150  Identities=18%  Similarity=0.226  Sum_probs=110.7

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc--CC-CCcEEEEEcchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ..++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...  ++ .++++++.+|+.+.++..      
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~------  178 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH------  178 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhc------
Confidence            45788999999999999999998754 789999999999999999998653  33 468999999998876542      


Q ss_pred             CCceeEEEEeCCCc------cc-HHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcC
Q 029803           94 EGSFDYAFVDADKD------NY-CNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADD  166 (187)
Q Consensus        94 ~~~~D~i~~d~~~~------~~-~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  166 (187)
                      .++||+|++|....      .+ ..+++.+.++|+|||+++++....    ..        ... ....+.++++.+-.+
T Consensus       179 ~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~~----~~--------~~~-~~~~~~~~l~~vF~~  245 (314)
T 2b2c_A          179 KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV----WL--------HLP-LIAHLVAFNRKIFPA  245 (314)
T ss_dssp             TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCT----TT--------CHH-HHHHHHHHHHHHCSE
T ss_pred             CCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEECCCc----cc--------CHH-HHHHHHHHHHHHCCc
Confidence            47899999986321      12 678999999999999999975211    00        000 334466677777666


Q ss_pred             CCeEEEeeec---CC-ceEEEEEc
Q 029803          167 PRVQLSHVAL---GD-GITICRRI  186 (187)
Q Consensus       167 ~~~~~~~lp~---~~-G~~~~~~~  186 (187)
                      .++....+|.   |+ |+.++.|+
T Consensus       246 v~~~~~~iP~~~~g~~g~~~ask~  269 (314)
T 2b2c_A          246 VTYAQSIVSTYPSGSMGYLICAKN  269 (314)
T ss_dssp             EEEEEEECTTSGGGEEEEEEEESS
T ss_pred             ceEEEEEecCcCCCceEEEEEeCC
Confidence            6666777776   34 78888764

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.76  E-value=2.2e-18  Score=129.94  Aligned_cols=116  Identities=19%  Similarity=0.261  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhh---CCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALT---IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~---~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      +.+..++..++...++.+|||||||+|+++..+++.   +.++++|+++|+++++++.|+      +...+++++++|+.
T Consensus        67 p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~------~~~~~v~~~~gD~~  140 (236)
T 2bm8_A           67 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQGDCS  140 (236)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEECCSS
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh------ccCCceEEEECcch
Confidence            777888888888888999999999999999999987   334789999999999998887      12357999999987


Q ss_pred             HH--HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHh-ccCCCeEEEEeCC
Q 029803           82 SV--LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMK-LLKVGGIAVYDNT  131 (187)
Q Consensus        82 ~~--~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~-~L~~gG~lv~~~~  131 (187)
                      +.  ++.+     ...+||+|+++..+..+..+++++.+ +|+|||++++++.
T Consensus       141 ~~~~l~~~-----~~~~fD~I~~d~~~~~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          141 DLTTFEHL-----REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             CSGGGGGG-----SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             hHHHHHhh-----ccCCCCEEEECCchHhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence            63  3322     12479999999877788889999996 9999999999876

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.76  E-value=1.5e-17  Score=122.74  Aligned_cols=116  Identities=16%  Similarity=0.131  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      +.....+...+...++.+|||+|||+|..+..+++.   +.+|+++|+++++++.|+++++..++.++++++++|+.+.+
T Consensus        41 ~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~  117 (204)
T 3njr_A           41 SPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL  117 (204)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc
Confidence            344445555556677889999999999999999986   57999999999999999999999998767999999997743


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +.       .++||+|+++... ... +++++.+.|+|||.+++....
T Consensus       118 ~~-------~~~~D~v~~~~~~-~~~-~l~~~~~~LkpgG~lv~~~~~  156 (204)
T 3njr_A          118 AD-------LPLPEAVFIGGGG-SQA-LYDRLWEWLAPGTRIVANAVT  156 (204)
T ss_dssp             TT-------SCCCSEEEECSCC-CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred             cc-------CCCCCEEEECCcc-cHH-HHHHHHHhcCCCcEEEEEecC
Confidence            32       3589999998743 444 899999999999999996543

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.76  E-value=1.3e-17  Score=123.79  Aligned_cols=168  Identities=15%  Similarity=0.138  Sum_probs=118.1

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC----cEEEEEcc
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH----KINFIESE   79 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~----~~~~~~~d   79 (187)
                      .+...+.+...+...++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...++..    +++++++|
T Consensus        14 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d   92 (217)
T 3jwh_A           14 NQQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSF-FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGA   92 (217)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTT-CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCC-CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCC
Confidence            344556666666777889999999999999999998655 5799999999999999999998777654    79999999


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCCc-----ccHHHHHHHHhccCCCeEEEEeCCCCCccccC----CCCCCCCCccc
Q 029803           80 ALSVLDQLLKYSENEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV----PEEQVPDHFRG  150 (187)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~D~i~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~----~~~~~~~~~~~  150 (187)
                      +... +.      ..++||+|++.....     ....+++++.++|+|||++++......+....    .......+...
T Consensus        93 ~~~~-~~------~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (217)
T 3jwh_A           93 LTYQ-DK------RFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFE  165 (217)
T ss_dssp             TTSC-CG------GGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-----------CCSC
T ss_pred             cccc-cc------cCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcccccccccccccccc
Confidence            7432 11      136899999875322     34678999999999999888754321111000    00001111111


Q ss_pred             chHHHHHHHHHHhhcCCCeEEEeeecCCc
Q 029803          151 SSRQAILDLNRSLADDPRVQLSHVALGDG  179 (187)
Q Consensus       151 ~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  179 (187)
                      .....+++|.+.+....+|++...++++.
T Consensus       166 ~~~~~l~~~~~~~~~~~Gf~v~~~~~g~~  194 (217)
T 3jwh_A          166 WTRSQFQNWANKITERFAYNVQFQPIGEA  194 (217)
T ss_dssp             BCHHHHHHHHHHHHHHSSEEEEECCCSCC
T ss_pred             cCHHHHHHHHHHHHHHcCceEEEEecCCc
Confidence            13455777888888888999998877653

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.76  E-value=7.7e-18  Score=123.87  Aligned_cols=119  Identities=18%  Similarity=0.170  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      ......+...+...++.+|||+|||+|..+..++...+ ..+++++|+++++++.++++++..++ ++++++++|+.+.+
T Consensus        26 ~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~  103 (204)
T 3e05_A           26 QEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMP-NGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGL  103 (204)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCT-TSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTC
T ss_pred             HHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhh
Confidence            34444444445566788999999999999999999875 78999999999999999999998887 57999999986643


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +.       .++||+|+++........+++++.++|+|||.+++....
T Consensus       104 ~~-------~~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  144 (204)
T 3e05_A          104 DD-------LPDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAVT  144 (204)
T ss_dssp             TT-------SCCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred             hc-------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEecc
Confidence            32       368999999876667889999999999999999996443

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.75  E-value=1.6e-17  Score=123.24  Aligned_cols=167  Identities=19%  Similarity=0.132  Sum_probs=116.8

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC----cEEEEEcch
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH----KINFIESEA   80 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~----~~~~~~~d~   80 (187)
                      +...+.+..++...++.+|||||||+|..+..++...+ ..+++++|+++.+++.+++++...++..    +++++++|+
T Consensus        15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~   93 (219)
T 3jwg_A           15 QQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKS-FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL   93 (219)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTT-CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS
T ss_pred             HHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc
Confidence            44455666666677899999999999999999998765 5799999999999999999988776654    799999998


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCc-----ccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCC----CCCCCcccc
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEE----QVPDHFRGS  151 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~----~~~~~~~~~  151 (187)
                      ... +.      ..++||+|++.....     ....+++++.++|+|||+++.......+.......    ....+....
T Consensus        94 ~~~-~~------~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (219)
T 3jwg_A           94 VYR-DK------RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGNLFEGNLRHRDHRFEW  166 (219)
T ss_dssp             SSC-CG------GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCCT-----GGGCCTTSB
T ss_pred             ccc-cc------ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcccCcccccccCceeee
Confidence            432 11      136899999875322     23578999999999999887754332211110000    001111111


Q ss_pred             hHHHHHHHHHHhhcCCCeEEEeeecCCc
Q 029803          152 SRQAILDLNRSLADDPRVQLSHVALGDG  179 (187)
Q Consensus       152 ~~~~~~~~~~~l~~~~~~~~~~lp~~~G  179 (187)
                      ....+++|.+.+....+|++...+++++
T Consensus       167 ~~~~l~~~~~~l~~~~Gf~v~~~~~g~~  194 (219)
T 3jwg_A          167 TRKEFQTWAVKVAEKYGYSVRFLQIGEI  194 (219)
T ss_dssp             CHHHHHHHHHHHHHHHTEEEEEEEESCC
T ss_pred             cHHHHHHHHHHHHHHCCcEEEEEecCCc
Confidence            3455777777777778899888876644

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.75  E-value=8.2e-17  Score=117.03  Aligned_cols=116  Identities=10%  Similarity=0.106  Sum_probs=93.3

Q ss_pred             HHHHHHHHH--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            9 QLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         9 ~ll~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      .++..+...  .++.+|||+|||+|..+..++.. + ..+|+++|+++++++.++++++..++ .+++++++|+.+....
T Consensus        32 ~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~  108 (189)
T 3p9n_A           32 SLFNIVTARRDLTGLAVLDLYAGSGALGLEALSR-G-AASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAA  108 (189)
T ss_dssp             HHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHH
T ss_pred             HHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHC-C-CCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhh
Confidence            344444433  57889999999999999988774 2 56899999999999999999999887 5799999999887654


Q ss_pred             HhhcccCCCceeEEEEeCCCc----ccHHHHHHHHh--ccCCCeEEEEeCCC
Q 029803           87 LLKYSENEGSFDYAFVDADKD----NYCNYHERLMK--LLKVGGIAVYDNTL  132 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~~~----~~~~~~~~~~~--~L~~gG~lv~~~~~  132 (187)
                      +     ..++||+|+++....    .....++.+.+  +|+|||++++....
T Consensus       109 ~-----~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          109 G-----TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             C-----CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             c-----cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            3     247899999986433    35677888888  99999999996543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.75  E-value=1.8e-17  Score=126.76  Aligned_cols=116  Identities=16%  Similarity=0.195  Sum_probs=93.2

Q ss_pred             HHHHHHHH--HcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            9 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         9 ~ll~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      +++..++.  ..++.+|||+|||+|..+..+++.++ ++.+|+++|+++.+++.|+++++..+...+++++++|+.+.  
T Consensus        58 ~~i~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~--  135 (261)
T 4gek_A           58 SMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI--  135 (261)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTC--
T ss_pred             HHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccc--
Confidence            34444444  34678999999999999999998764 36799999999999999999999888888899999998653  


Q ss_pred             HHhhcccCCCceeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           86 QLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                             ..++||+|++...-     .....+++++.+.|+|||++++.+...
T Consensus       136 -------~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~  181 (261)
T 4gek_A          136 -------AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFS  181 (261)
T ss_dssp             -------CCCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             -------cccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence                   13679999987532     233467999999999999999876543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.74  E-value=1e-17  Score=129.21  Aligned_cols=106  Identities=16%  Similarity=0.219  Sum_probs=90.8

Q ss_pred             HHHHcCCCEEEEEcccccHHH-HHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           14 LLRLVNAKKTIEIGVFTGYSL-LLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~-~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      ++...++.+|||||||+|..+ +.+++ .+ +++|+++|+++++++.|+++++..++ ++++++++|+.+. +       
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~-~~-ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l-~-------  185 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSH-VY-GMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVI-D-------  185 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHH-TT-CCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGG-G-------
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHH-cc-CCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhC-C-------
Confidence            556788999999999998655 44554 44 78999999999999999999999898 7899999999763 2       


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                       .++||+||+++..+....+++++.+.|+|||.+++.+.
T Consensus       186 -d~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          186 -GLEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             -GCCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             -CCCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence             37899999987777888999999999999999999763

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.74  E-value=5e-17  Score=127.34  Aligned_cols=151  Identities=13%  Similarity=0.131  Sum_probs=107.8

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc--C-C-CCcEEEEEcchHHHHHHHhhccc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--G-V-DHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~-~-~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      ..++++|||||||+|..+..+++..+ ..+++++|+++.+++.+++++...  + + .++++++.+|+.+.++..     
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-----  148 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT-----  148 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC-----
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc-----
Confidence            45789999999999999999998654 689999999999999999998652  2 2 357999999998876542     


Q ss_pred             CCCceeEEEEeCCCcc----------cHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHH
Q 029803           93 NEGSFDYAFVDADKDN----------YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRS  162 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~----------~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (187)
                       .++||+|++|.....          ...+++.+.++|+|||++++.....    ......        ....+.+.++.
T Consensus       149 -~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~----~~~~~~--------~~~~~~~~l~~  215 (314)
T 1uir_A          149 -EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMI----LLTHHR--------VHPVVHRTVRE  215 (314)
T ss_dssp             -CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEE----CC---C--------HHHHHHHHHHT
T ss_pred             -CCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEccCc----cccCHH--------HHHHHHHHHHH
Confidence             478999999974433          4789999999999999999852110    000001        33334444444


Q ss_pred             hhcCCCeEEEeeecCCc---eEEEEEc
Q 029803          163 LADDPRVQLSHVALGDG---ITICRRI  186 (187)
Q Consensus       163 l~~~~~~~~~~lp~~~G---~~~~~~~  186 (187)
                      +-.+..+....+|..+|   +.+++|.
T Consensus       216 ~F~~v~~~~~~vP~~~g~~~~~~as~~  242 (314)
T 1uir_A          216 AFRYVRSYKNHIPGFFLNFGFLLASDA  242 (314)
T ss_dssp             TCSEEEEEEEEEGGGTEEEEEEEEESS
T ss_pred             HCCceEEEEEecCCCCCeEEEEEEECC
Confidence            43334445556676554   6667653

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.73  E-value=1.9e-17  Score=118.86  Aligned_cols=115  Identities=19%  Similarity=0.172  Sum_probs=92.8

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      +.+...+...++.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++...++..++ ++++|+.+.++.. 
T Consensus        15 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~-   91 (178)
T 3hm2_A           15 ALAISALAPKPHETLWDIGGGSGSIAIEWLRSTP-QTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDV-   91 (178)
T ss_dssp             HHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSS-SEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGC-
T ss_pred             HHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhcc-
Confidence            3333344456777999999999999999999876 789999999999999999999998887678 8888886544321 


Q ss_pred             hcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           89 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                           .++||+|++...... ..+++++.+.|+|||.+++....
T Consensus        92 -----~~~~D~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A           92 -----PDNPDVIFIGGGLTA-PGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             -----CSCCSEEEECC-TTC-TTHHHHHHHTCCTTCEEEEEECS
T ss_pred             -----CCCCCEEEECCcccH-HHHHHHHHHhcCCCCEEEEEeec
Confidence                 378999999865444 67899999999999999986544

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.73  E-value=1.8e-16  Score=122.35  Aligned_cols=148  Identities=11%  Similarity=0.075  Sum_probs=106.4

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc--CC--------CCcEEEEEcchHHHHH
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV--------DHKINFIESEALSVLD   85 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~--------~~~~~~~~~d~~~~~~   85 (187)
                      ...++++|||||||+|..+..+++. + ..+++++|+++.+++.|++++ ..  ++        .++++++.+|+.+.++
T Consensus        72 ~~~~~~~VLdiG~G~G~~~~~l~~~-~-~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~  148 (281)
T 1mjf_A           72 AHPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIK  148 (281)
T ss_dssp             HSSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred             hCCCCCeEEEEcCCcCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhc
Confidence            3457899999999999999999987 5 789999999999999999998 43  32        4679999999988765


Q ss_pred             HHhhcccCCCceeEEEEeCCC-----cc--cHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHH
Q 029803           86 QLLKYSENEGSFDYAFVDADK-----DN--YCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  158 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~-----~~--~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (187)
                      .       .++||+|++|...     ..  ...+++.+.++|+|||+++++......       .     .. ....+.+
T Consensus       149 ~-------~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~-------~-----~~-~~~~~~~  208 (281)
T 1mjf_A          149 N-------NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAGSVYL-------F-----TD-ELISAYK  208 (281)
T ss_dssp             H-------CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEEETTT-------S-----HH-HHHHHHH
T ss_pred             c-------cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCCccc-------C-----HH-HHHHHHH
Confidence            4       2789999999742     11  477899999999999999986321000       0     00 2333444


Q ss_pred             HHHHhhcCCCeEEEeeecCCc---eEEEEEc
Q 029803          159 LNRSLADDPRVQLSHVALGDG---ITICRRI  186 (187)
Q Consensus       159 ~~~~l~~~~~~~~~~lp~~~G---~~~~~~~  186 (187)
                      ..+.+-.+..+....+|..+|   +.+++|.
T Consensus       209 ~l~~~f~~v~~~~~~vP~~~g~~~~~~as~~  239 (281)
T 1mjf_A          209 EMKKVFDRVYYYSFPVIGYASPWAFLVGVKG  239 (281)
T ss_dssp             HHHHHCSEEEEEEECCTTSSSSEEEEEEEES
T ss_pred             HHHHHCCceEEEEEecCCCCceEEEEEeeCC
Confidence            455444444444555676544   7777764

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.73  E-value=1e-16  Score=115.94  Aligned_cols=102  Identities=14%  Similarity=0.143  Sum_probs=82.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++.   +.+|+++|+++++++.|+++++..++ .++++++++..+. ..+     ..++|
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l-~~~-----~~~~f   90 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENL-DHY-----VREPI   90 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGG-GGT-----CCSCE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHH-Hhh-----ccCCc
Confidence            46789999999999999999986   67999999999999999999998887 5799999776543 211     24789


Q ss_pred             eEEEEeC-CC-----------cccHHHHHHHHhccCCCeEEEEe
Q 029803           98 DYAFVDA-DK-----------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        98 D~i~~d~-~~-----------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|+++. ..           ......++++.++|+|||.+++.
T Consensus        91 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  134 (185)
T 3mti_A           91 RAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM  134 (185)
T ss_dssp             EEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence            9999872 11           22346788999999999999885

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.73  E-value=5.4e-17  Score=116.64  Aligned_cols=108  Identities=19%  Similarity=0.223  Sum_probs=89.3

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..+++. + ..+++++|+++++++.+++++...++.++++++.+|+.+.++..      .++
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------~~~  100 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSR-G-MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL------TGR  100 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHT-T-CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB------CSC
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh------cCC
Confidence            446789999999999999999886 3 57999999999999999999998888778999999998866543      467


Q ss_pred             eeEEEEeCCC--cccHHHHHHHH--hccCCCeEEEEeCCC
Q 029803           97 FDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~~~--~~~~~~~~~~~--~~L~~gG~lv~~~~~  132 (187)
                      ||+|+++...  ......++.+.  ++|+|||++++....
T Consensus       101 fD~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  140 (177)
T 2esr_A          101 FDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCETDK  140 (177)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCEEEECCCCCcchHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence            9999998643  33455667776  899999999986443

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.72  E-value=2.5e-16  Score=118.73  Aligned_cols=105  Identities=15%  Similarity=0.184  Sum_probs=88.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|..+..++...+ +.+|+++|+++++++.++++++..++. +++++++|+.+.....    ...++|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~----~~~~~f  142 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRK----DVRESY  142 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCT----TTTTCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccc----cccCCc
Confidence            4678999999999999999997655 789999999999999999999988876 4999999997642100    013689


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++.. ...+..+++.+.++|+|||++++.
T Consensus       143 D~V~~~~-~~~~~~~l~~~~~~LkpgG~l~~~  173 (240)
T 1xdz_A          143 DIVTARA-VARLSVLSELCLPLVKKNGLFVAL  173 (240)
T ss_dssp             EEEEEEC-CSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cEEEEec-cCCHHHHHHHHHHhcCCCCEEEEE
Confidence            9999987 456788999999999999999885

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.72  E-value=9.9e-17  Score=126.52  Aligned_cols=111  Identities=23%  Similarity=0.406  Sum_probs=90.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc--CC-CCcEEEEEcchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ..++++|||||||+|..+..+++..+ ..+|+++|+++.+++.|++++...  ++ ..+++++++|+.+.++.+     .
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~-~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~-----~  191 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----A  191 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----C
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc-----c
Confidence            35788999999999999999998754 689999999999999999998753  33 357999999998876543     1


Q ss_pred             CCceeEEEEeCCCc----c---cHHHHHHHHhccCCCeEEEEe-CCCC
Q 029803           94 EGSFDYAFVDADKD----N---YCNYHERLMKLLKVGGIAVYD-NTLW  133 (187)
Q Consensus        94 ~~~~D~i~~d~~~~----~---~~~~~~~~~~~L~~gG~lv~~-~~~~  133 (187)
                      .++||+|++|....    .   ...+++.+.++|+|||+++++ +..|
T Consensus       192 ~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~  239 (334)
T 1xj5_A          192 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESLW  239 (334)
T ss_dssp             TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCTT
T ss_pred             CCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEecCCcc
Confidence            36899999986421    1   478999999999999999996 4444

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.72  E-value=2.8e-16  Score=117.01  Aligned_cols=105  Identities=21%  Similarity=0.295  Sum_probs=88.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++.+|||||||+|.++..+|...+ +.+|+++|+++.+++.|++++...++.+ ++++++|+.+.++...    ..++||
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p-~~~v~giD~s~~~l~~a~~~~~~~~l~n-v~~~~~Da~~~l~~~~----~~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRP-EQDFLGIEVHSPGVGACLASAHEEGLSN-LRVMCHDAVEVLHKMI----PDNSLR  107 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHTTCSS-EEEECSCHHHHHHHHS----CTTCEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCC-CCeEEEEEecHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHc----CCCChh
Confidence            567999999999999999999877 7899999999999999999999888764 9999999998766532    357999


Q ss_pred             EEEEeC---CCc--c------cHHHHHHHHhccCCCeEEEEe
Q 029803           99 YAFVDA---DKD--N------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        99 ~i~~d~---~~~--~------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .|++..   ++.  .      ...+++.+.++|+|||++++.
T Consensus       108 ~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~  149 (218)
T 3dxy_A          108 MVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMA  149 (218)
T ss_dssp             EEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEE
Confidence            999863   221  1      135899999999999999884

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.71  E-value=1.7e-16  Score=114.64  Aligned_cols=110  Identities=15%  Similarity=0.154  Sum_probs=89.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.+++++...++.++++++++|+.+..+.+..   ..++|
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~-~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~f  117 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSR-G-MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE---EKLQF  117 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH---TTCCE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh---cCCCC
Confidence            46789999999999999988874 2 5799999999999999999999888777899999999886654321   14789


Q ss_pred             eEEEEeCC--CcccHHHHHHH--HhccCCCeEEEEeCCC
Q 029803           98 DYAFVDAD--KDNYCNYHERL--MKLLKVGGIAVYDNTL  132 (187)
Q Consensus        98 D~i~~d~~--~~~~~~~~~~~--~~~L~~gG~lv~~~~~  132 (187)
                      |+|+++..  .......++.+  .++|+|||++++....
T Consensus       118 D~i~~~~~~~~~~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          118 DLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             EEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CEEEECCCCCchhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            99999864  23445666776  7899999999986433

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.71  E-value=2.7e-16  Score=121.01  Aligned_cols=107  Identities=16%  Similarity=0.198  Sum_probs=88.4

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc--CC-CCcEEEEEcchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ..++++|||||||+|..+..+++..+ ..+|+++|+++++++.|++++...  ++ .++++++.+|+.+.++..      
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~------  145 (275)
T 1iy9_A           73 HPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------  145 (275)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------
T ss_pred             CCCCCEEEEECCchHHHHHHHHhCCC-CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------
Confidence            35789999999999999999988644 689999999999999999998642  33 368999999998876542      


Q ss_pred             CCceeEEEEeCCCcc-------cHHHHHHHHhccCCCeEEEEeC
Q 029803           94 EGSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .++||+|++|.....       ...+++.+.+.|+|||++++..
T Consensus       146 ~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            478999999864321       2679999999999999999963

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.70  E-value=3.7e-16  Score=112.99  Aligned_cols=117  Identities=20%  Similarity=0.193  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      ......+...+...++.+|||+|||+|..+..++...   .+++++|+++++++.+++++...+...++++.++|+.+.+
T Consensus        19 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   95 (192)
T 1l3i_A           19 MEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL   95 (192)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhc
Confidence            4445555555566788899999999999999998864   6999999999999999999998887667999999987744


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +.       .++||+|+++........+++.+.++|+|||.+++...
T Consensus        96 ~~-------~~~~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A           96 CK-------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             TT-------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cc-------CCCCCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            32       25899999987666778899999999999999998643

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.70  E-value=1.6e-16  Score=115.99  Aligned_cols=108  Identities=11%  Similarity=0.156  Sum_probs=89.7

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..+++.+.+.++++++|+++.+++.++++++..++..+++++++|+.+....      ..++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~~   93 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY------IDCP   93 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT------CCSC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh------ccCC
Confidence            4567899999999999999999987446799999999999999999999988877899999998664322      2478


Q ss_pred             eeEEEEeCCC------------cccHHHHHHHHhccCCCeEEEEeC
Q 029803           97 FDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        97 ~D~i~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ||+|+++...            .....+++++.++|+|||.+++..
T Consensus        94 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           94 VKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             EEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            9999988521            123568999999999999998854

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.70  E-value=2.1e-16  Score=116.14  Aligned_cols=117  Identities=13%  Similarity=0.121  Sum_probs=90.4

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHH
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQL   87 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~   87 (187)
                      .++..+....++.+|||+|||+|..+..++...  ..+|+++|+++++++.|+++++..++. .+++++++|+.+..+.+
T Consensus        43 ~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~  120 (201)
T 2ift_A           43 TLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP  120 (201)
T ss_dssp             HHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC
T ss_pred             HHHHHHHHhcCCCeEEEcCCccCHHHHHHHHcc--CCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh
Confidence            334444333478899999999999999877652  369999999999999999999988874 57999999998764321


Q ss_pred             hhcccCCCc-eeEEEEeCC--CcccHHHHHHH--HhccCCCeEEEEeCCC
Q 029803           88 LKYSENEGS-FDYAFVDAD--KDNYCNYHERL--MKLLKVGGIAVYDNTL  132 (187)
Q Consensus        88 ~~~~~~~~~-~D~i~~d~~--~~~~~~~~~~~--~~~L~~gG~lv~~~~~  132 (187)
                           ..++ ||+|+++..  .......++.+  .++|+|||++++....
T Consensus       121 -----~~~~~fD~I~~~~~~~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~  165 (201)
T 2ift_A          121 -----QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVETEK  165 (201)
T ss_dssp             -----CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             -----ccCCCCCEEEECCCCCCccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence                 1367 999999865  33456677777  5689999999986544

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.70  E-value=4.1e-16  Score=127.53  Aligned_cols=119  Identities=16%  Similarity=0.229  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      ...++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++.+++.  ++++++|+.+....
T Consensus        89 ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~  166 (464)
T 3m6w_A           89 SAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEA  166 (464)
T ss_dssp             TTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHH
T ss_pred             HHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhh
Confidence            3456666667778899999999999999999998875689999999999999999999999986  89999999876543


Q ss_pred             HhhcccCCCceeEEEEeCCCc---------c----------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           87 LLKYSENEGSFDYAFVDADKD---------N----------------YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~~~---------~----------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +      .++||+|++|+...         .                ...+++.+.++|+|||.|++..+.+
T Consensus       167 ~------~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~  232 (464)
T 3m6w_A          167 F------GTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF  232 (464)
T ss_dssp             H------CSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             c------cccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence            3      47899999986421         1                1567888999999999999876554

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.70  E-value=6.3e-17  Score=121.88  Aligned_cols=116  Identities=18%  Similarity=0.176  Sum_probs=90.9

Q ss_pred             HHHHHHHH--HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            9 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         9 ~ll~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      .++..++.  ..++.+|||||||+|.++.++++..+  .++++||++|++++.|+++....+  .+++++.+|+.+....
T Consensus        48 ~~m~~~a~~~~~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~  123 (236)
T 3orh_A           48 PYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPT  123 (236)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGG
T ss_pred             HHHHHHHHhhccCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhccc
Confidence            34444444  24678999999999999999988643  589999999999999999987655  4688999999876554


Q ss_pred             HhhcccCCCceeEEEEeCCC--------cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           87 LLKYSENEGSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +     ..++||.|+.|...        .....+++++.++|||||++++.+...
T Consensus       124 ~-----~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~~~~  173 (236)
T 3orh_A          124 L-----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTS  173 (236)
T ss_dssp             S-----CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHH
T ss_pred             c-----cccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEecCC
Confidence            3     35789999988532        234568899999999999999876443

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.70  E-value=4.2e-16  Score=121.14  Aligned_cols=106  Identities=17%  Similarity=0.187  Sum_probs=86.6

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh--cCC-CCcEEEEEcchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK--AGV-DHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~--~~~-~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ..++++|||||||+|..+..+++..+ ..+|+++|+++.+++.+++++..  .++ .++++++++|+.+.++..      
T Consensus        88 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  160 (296)
T 1inl_A           88 HPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------  160 (296)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC------
Confidence            35778999999999999999998754 68999999999999999999864  233 357999999998765432      


Q ss_pred             CCceeEEEEeCCCc--------ccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++||+|++|....        ....+++.+.++|+|||++++.
T Consensus       161 ~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  204 (296)
T 1inl_A          161 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  204 (296)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            46899999986432        2368899999999999999996

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.69  E-value=9.7e-16  Score=109.04  Aligned_cols=106  Identities=13%  Similarity=0.128  Sum_probs=86.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..++...+   +++++|+++++++.+++++...++  +++++++|+.+.++.....   .++||
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~---~~~~D  112 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW---EAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQ---GERFT  112 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC---EEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHT---TCCEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhcc---CCceE
Confidence            788999999999999999998643   599999999999999999998876  6999999998866554211   34899


Q ss_pred             EEEEeCCC-cccHHHHHHHH--hccCCCeEEEEeCCC
Q 029803           99 YAFVDADK-DNYCNYHERLM--KLLKVGGIAVYDNTL  132 (187)
Q Consensus        99 ~i~~d~~~-~~~~~~~~~~~--~~L~~gG~lv~~~~~  132 (187)
                      +|+++... ......++.+.  ++|+|||++++....
T Consensus       113 ~i~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  149 (171)
T 1ws6_A          113 VAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             EEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEEEET
T ss_pred             EEEECCCCchhHHHHHHHHHhhcccCCCcEEEEEeCC
Confidence            99998532 45556777777  999999999986443

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.69  E-value=1.4e-15  Score=116.96  Aligned_cols=121  Identities=21%  Similarity=0.207  Sum_probs=97.1

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      .++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++..++. +++++++|+.+....+.
T Consensus        73 ~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~  151 (274)
T 3ajd_A           73 MIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLL  151 (274)
T ss_dssp             GHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHH
T ss_pred             HHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhh
Confidence            45555666678889999999999999999998763489999999999999999999998876 69999999987644321


Q ss_pred             hcccCCCceeEEEEeCCC---------------------cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           89 KYSENEGSFDYAFVDADK---------------------DNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~---------------------~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .   ..++||+|++|...                     .....+++.+.++|+|||.+++.....
T Consensus       152 ~---~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~  214 (274)
T 3ajd_A          152 K---NEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM  214 (274)
T ss_dssp             H---TTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             h---ccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence            1   13689999999432                     223678899999999999999975543

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.69  E-value=6.1e-16  Score=126.34  Aligned_cols=121  Identities=16%  Similarity=0.182  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      ....++..++...++.+|||+|||+|..++.+|..++..++|+++|+++.+++.+++|++.+++. ++.++++|+.+...
T Consensus        92 ~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~  170 (456)
T 3m4x_A           92 PSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVP  170 (456)
T ss_dssp             TTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhh
Confidence            33456666777778899999999999999999988765689999999999999999999999986 59999999987654


Q ss_pred             HHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           86 QLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .+      .++||+|++|+....                         ...+++.+.++|+|||.|++..+..
T Consensus       171 ~~------~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~  237 (456)
T 3m4x_A          171 HF------SGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF  237 (456)
T ss_dssp             HH------TTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             hc------cccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            33      478999999964211                         1267888899999999999876654

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.68  E-value=1.5e-15  Score=119.20  Aligned_cols=106  Identities=19%  Similarity=0.292  Sum_probs=87.7

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc--CC-CCcEEEEEcchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ..++++|||||||+|..+..+++..+ ..+++++|+++++++.+++++...  ++ .++++++++|+.+.++..      
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  186 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------  186 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc------
Confidence            45788999999999999999998654 689999999999999999998652  23 357999999998876542      


Q ss_pred             CCceeEEEEeCCCc-----c-c-HHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKD-----N-Y-CNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~-----~-~-~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++||+|++|....     . + ..+++.+.+.|+|||++++.
T Consensus       187 ~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  229 (321)
T 2pt6_A          187 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ  229 (321)
T ss_dssp             CSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence            47899999986311     1 2 68899999999999999996

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.68  E-value=4.9e-16  Score=121.18  Aligned_cols=107  Identities=15%  Similarity=0.134  Sum_probs=88.0

Q ss_pred             HcCCC--EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           17 LVNAK--KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~--~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ...++  +|||||||+|..+.++++.++ +.+++++|+++.+++.+++++.... ..+++++++|+.+++..+     ..
T Consensus        85 ~p~p~~~rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~-----~~  157 (317)
T 3gjy_A           85 HQDASKLRITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESF-----TP  157 (317)
T ss_dssp             HSCGGGCEEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTC-----CT
T ss_pred             CCCCCCCEEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhc-----cC
Confidence            34445  999999999999999999776 6799999999999999999985432 458999999999887643     24


Q ss_pred             CceeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEeC
Q 029803           95 GSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        95 ~~~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ++||+|++|....       ....+++.+.++|+|||++++..
T Consensus       158 ~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~  200 (317)
T 3gjy_A          158 ASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANC  200 (317)
T ss_dssp             TCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEe
Confidence            6899999985321       13689999999999999999864

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.68  E-value=6.9e-16  Score=113.49  Aligned_cols=105  Identities=14%  Similarity=0.109  Sum_probs=85.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..++.++...  ..+|+++|+++++++.++++++..++ .+++++++|+.+.++.      ..++|
T Consensus        53 ~~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~------~~~~f  123 (202)
T 2fpo_A           53 IVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQ------KGTPH  123 (202)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSS------CCCCE
T ss_pred             cCCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhh------cCCCC
Confidence            478899999999999999877653  35999999999999999999998887 5799999999876543      14689


Q ss_pred             eEEEEeCC--CcccHHHHHHHHh--ccCCCeEEEEeCC
Q 029803           98 DYAFVDAD--KDNYCNYHERLMK--LLKVGGIAVYDNT  131 (187)
Q Consensus        98 D~i~~d~~--~~~~~~~~~~~~~--~L~~gG~lv~~~~  131 (187)
                      |+|+++..  .......++.+.+  +|+|||++++...
T Consensus       124 D~V~~~~p~~~~~~~~~l~~l~~~~~L~pgG~l~i~~~  161 (202)
T 2fpo_A          124 NIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESE  161 (202)
T ss_dssp             EEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             CEEEECCCCCCCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence            99999865  2345567777755  5999999988643

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.68  E-value=1.3e-15  Score=111.90  Aligned_cols=114  Identities=15%  Similarity=0.175  Sum_probs=92.9

Q ss_pred             HHHHHHHHHH-HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            7 HGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         7 ~~~ll~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      ...++..+.. ..++.+|||+|||+|..+..+++. + ..+++++|+++.+++.+++++...+..+ +++.++|+.+.  
T Consensus        47 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~--  121 (205)
T 3grz_A           47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL-G-AKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLAD--  121 (205)
T ss_dssp             HHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTT--
T ss_pred             HHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEecccccc--
Confidence            3344455444 346789999999999999998874 3 5699999999999999999999888776 99999998653  


Q ss_pred             HHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           86 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                             ..++||+|+++........+++++.++|+|||.+++.+..
T Consensus       122 -------~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  161 (205)
T 3grz_A          122 -------VDGKFDLIVANILAEILLDLIPQLDSHLNEDGQVIFSGID  161 (205)
T ss_dssp             -------CCSCEEEEEEESCHHHHHHHGGGSGGGEEEEEEEEEEEEE
T ss_pred             -------CCCCceEEEECCcHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence                   1478999999876666777888899999999999986443

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.68  E-value=1.7e-16  Score=120.93  Aligned_cols=114  Identities=18%  Similarity=0.206  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            8 GQLMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         8 ~~ll~~l~~~~-~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      +.++..++... ++.+|||+|||+|..++.++...+  .+|+++|+++.+++.|++++..+++.++++++++|+.+....
T Consensus        37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~--~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~  114 (259)
T 3lpm_A           37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTK--AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL  114 (259)
T ss_dssp             HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCC--CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcC--CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh
Confidence            45666666666 788999999999999999998754  499999999999999999999999988899999999876432


Q ss_pred             HhhcccCCCceeEEEEeCCC-----------------------cccHHHHHHHHhccCCCeEEEE
Q 029803           87 LLKYSENEGSFDYAFVDADK-----------------------DNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~~-----------------------~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +     ..++||+|+++...                       .....+++.+.++|+|||.+++
T Consensus       115 ~-----~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  174 (259)
T 3lpm_A          115 I-----PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANF  174 (259)
T ss_dssp             S-----CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEE
T ss_pred             h-----ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEE
Confidence            2     24789999997421                       1234688999999999999998

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.68  E-value=2.6e-16  Score=114.00  Aligned_cols=113  Identities=15%  Similarity=0.147  Sum_probs=90.9

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHH
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQL   87 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~   87 (187)
                      +.+...+...++.+|||+|||+|..+..++..   ..+++++|+++.+++.+++++...++.+ +++++.+|+.+..+  
T Consensus        42 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~--  116 (194)
T 1dus_A           42 KILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK--  116 (194)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT--
T ss_pred             HHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc--
Confidence            33333344557789999999999999999886   5799999999999999999999888764 59999999876322  


Q ss_pred             hhcccCCCceeEEEEeCCC----cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           88 LKYSENEGSFDYAFVDADK----DNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~----~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                            .++||+|+++...    .....+++.+.++|+|||.+++....
T Consensus       117 ------~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  159 (194)
T 1dus_A          117 ------DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             ------TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             ------cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence                  3689999998642    33567889999999999999986443

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.68  E-value=1.8e-16  Score=120.11  Aligned_cols=114  Identities=21%  Similarity=0.282  Sum_probs=93.4

Q ss_pred             HHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   89 (187)
Q Consensus        10 ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   89 (187)
                      .+...+...++.+|||||||+|..+..++...  +.+++++|+++.+++.+++++...++.+++++.++|+.+..     
T Consensus        27 ~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-----   99 (256)
T 1nkv_A           27 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-----   99 (256)
T ss_dssp             HHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-----
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC-----
Confidence            33333445677899999999999999999876  46999999999999999999998888778999999987531     


Q ss_pred             cccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           90 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                         ..++||+|++...   ..+...+++++.++|+|||.+++.+..+
T Consensus       100 ---~~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~  143 (256)
T 1nkv_A          100 ---ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYW  143 (256)
T ss_dssp             ---CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred             ---cCCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcc
Confidence               1378999998643   2356788999999999999999976544

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.68  E-value=7.8e-16  Score=119.65  Aligned_cols=116  Identities=8%  Similarity=0.068  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHH---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            7 HGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         7 ~~~ll~~l~~~---~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      ....+..++..   .++.+|||||||+|..+..+++..+  .+|+++|+++++++.+++++...++..++++..+|+.+.
T Consensus        57 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (302)
T 3hem_A           57 QYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF  134 (302)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred             HHHHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc
Confidence            33444455543   4677999999999999999998764  699999999999999999999999888899999998654


Q ss_pred             HHHHhhcccCCCceeEEEEeCCC------------cccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTLWG  134 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                                .++||+|++....            ..+..+++++.++|+|||.+++.+....
T Consensus       135 ----------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  187 (302)
T 3hem_A          135 ----------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP  187 (302)
T ss_dssp             ----------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECC
T ss_pred             ----------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEecc
Confidence                      3799999987432            3347899999999999999999876543

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.67  E-value=6.1e-15  Score=116.27  Aligned_cols=109  Identities=16%  Similarity=0.234  Sum_probs=89.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++.+|||+|||+|..++.++..   +.+|+++|+++.+++.+++|++.+++.+ +++++++|+.+.++.....   .++
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~---ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~---~~~  225 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR---GST  225 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH---TCC
T ss_pred             CCCCcEEEcccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhc---CCC
Confidence            45679999999999999999985   4599999999999999999999988875 5999999999876543211   368


Q ss_pred             eeEEEEeCCC-------------cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           97 FDYAFVDADK-------------DNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~~~-------------~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ||+|++|...             ..+..+++.+.++|+|||++++....
T Consensus       226 fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~  274 (332)
T 2igt_A          226 YDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY  274 (332)
T ss_dssp             BSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred             ceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence            9999998642             12467888899999999997775433

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.67  E-value=5.2e-16  Score=121.61  Aligned_cols=121  Identities=21%  Similarity=0.249  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      .....++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++..++. +++++++|+.+..
T Consensus       104 d~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~  182 (315)
T 1ixk_A          104 EASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIG  182 (315)
T ss_dssp             CHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGG
T ss_pred             CHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhcc
Confidence            344556666677778889999999999999999998765689999999999999999999998876 5999999987642


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      . .      .++||+|++|.....                         ...+++++.++|||||.+++.....
T Consensus       183 ~-~------~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          183 E-L------NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             G-G------CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             c-c------cccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            2 1      468999999853211                         1467889999999999999976543

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.67  E-value=1.5e-16  Score=120.77  Aligned_cols=116  Identities=20%  Similarity=0.246  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      +.....+...+...++.+|||+|||+|..+..++..+.+..+++++|+++++++.|+++++..++.++++++++|+.+.+
T Consensus        79 ~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  158 (255)
T 3mb5_A           79 PKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI  158 (255)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC
T ss_pred             HhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc
Confidence            34445555566677889999999999999999999854478999999999999999999999998878999999997542


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                              ..++||+|+++.  .....+++++.+.|+|||.+++..
T Consensus       159 --------~~~~~D~v~~~~--~~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          159 --------EEENVDHVILDL--PQPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             --------CCCSEEEEEECS--SCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             --------CCCCcCEEEECC--CCHHHHHHHHHHHcCCCCEEEEEE
Confidence                    246899999974  344578899999999999999853

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.67  E-value=1.1e-16  Score=121.34  Aligned_cols=116  Identities=22%  Similarity=0.263  Sum_probs=94.8

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      .++..+....++.+|||||||+|..+..++...+  .+|+++|+++.+++.+++++...++.++++++++|+.+. +   
T Consensus        36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~---  109 (257)
T 3f4k_A           36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNL-P---  109 (257)
T ss_dssp             HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-S---
T ss_pred             HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhC-C---
Confidence            3344333455678999999999999999999875  499999999999999999999999888899999998543 1   


Q ss_pred             hcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           89 KYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                         ...++||+|++...  +-....+++.+.++|+|||++++.+..+
T Consensus       110 ---~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  153 (257)
T 3f4k_A          110 ---FQNEELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSEASW  153 (257)
T ss_dssp             ---SCTTCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred             ---CCCCCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEEeec
Confidence               12479999998753  2256788999999999999999987543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.67  E-value=1.2e-16  Score=122.03  Aligned_cols=118  Identities=14%  Similarity=0.185  Sum_probs=93.3

Q ss_pred             HHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh---cCCCCcEEEEEcchHHHHHH
Q 029803           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK---AGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus        10 ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~~~~~~~~~~d~~~~~~~   86 (187)
                      +|..++...++.+|||+|||+|..++.++...+ ..+|+++|+++++++.|++++..   +++.++++++++|+.+..+.
T Consensus        27 lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~  105 (260)
T 2ozv_A           27 LLASLVADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKA  105 (260)
T ss_dssp             HHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHH
T ss_pred             HHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhh
Confidence            445555555778999999999999999999876 78999999999999999999988   78777899999999776432


Q ss_pred             HhhcccCCCceeEEEEeCCC---------------------cccHHHHHHHHhccCCCeEEEE
Q 029803           87 LLKYSENEGSFDYAFVDADK---------------------DNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~~---------------------~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ........++||+|+++...                     ..+..+++.+.++|+|||.+++
T Consensus       106 ~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~  168 (260)
T 2ozv_A          106 RVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSL  168 (260)
T ss_dssp             HHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEE
T ss_pred             hhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEE
Confidence            21110124689999998321                     1256788999999999999987

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.67  E-value=3.9e-15  Score=106.84  Aligned_cols=112  Identities=21%  Similarity=0.132  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      +.....+...+...++.+|||+|||+|..+..++.  + ..+++++|+++.+++.+++++...++. +++++++|+.+.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~   96 (183)
T 2yxd_A           21 EEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK--R-CKFVYAIDYLDGAIEVTKQNLAKFNIK-NCQIIKGRAEDVL   96 (183)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT--T-SSEEEEEECSHHHHHHHHHHHHHTTCC-SEEEEESCHHHHG
T ss_pred             HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh--c-CCeEEEEeCCHHHHHHHHHHHHHcCCC-cEEEEECCccccc
Confidence            33444455555566788999999999999999988  3 789999999999999999999988874 6999999998732


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +        .++||+|+++.. .....+++.+.++  |||.+++...
T Consensus        97 ~--------~~~~D~i~~~~~-~~~~~~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A           97 D--------KLEFNKAFIGGT-KNIEKIIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             G--------GCCCSEEEECSC-SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred             c--------CCCCcEEEECCc-ccHHHHHHHHhhC--CCCEEEEEec
Confidence            2        268999999876 6778888888888  9999998643

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.67  E-value=7.5e-16  Score=114.11  Aligned_cols=112  Identities=18%  Similarity=0.261  Sum_probs=92.5

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +...++.+|||+|||+|..+..+++..++..+++++|+++.+++.+++++...++. +++++.+|+.+..       ...
T Consensus        33 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~-------~~~  104 (219)
T 3dh0_A           33 FGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKIP-------LPD  104 (219)
T ss_dssp             HTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBCS-------SCS
T ss_pred             hCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccCC-------CCC
Confidence            34567789999999999999999998744789999999999999999999988876 6999999986531       124


Q ss_pred             CceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803           95 GSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG  134 (187)
Q Consensus        95 ~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      ++||+|++...   ..+...+++++.++|+|||.+++.+....
T Consensus       105 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~  147 (219)
T 3dh0_A          105 NTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE  147 (219)
T ss_dssp             SCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             CCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccc
Confidence            78999998753   23457899999999999999999765543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.67  E-value=2.6e-16  Score=116.16  Aligned_cols=116  Identities=18%  Similarity=0.263  Sum_probs=93.3

Q ss_pred             HHHHHHHHHc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            9 QLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         9 ~ll~~l~~~~--~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      .+...++...  ++.+|||+|||+|..+..++.. + +.+++++|+++.+++.+++++...++.++++++++|+.+. + 
T Consensus        31 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~-  106 (219)
T 3dlc_A           31 IIAENIINRFGITAGTCIDIGSGPGALSIALAKQ-S-DFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNI-P-  106 (219)
T ss_dssp             HHHHHHHHHHCCCEEEEEEETCTTSHHHHHHHHH-S-EEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBC-S-
T ss_pred             HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHC-C-
Confidence            3444444432  3349999999999999999987 4 6899999999999999999999988887899999998652 1 


Q ss_pred             HhhcccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           87 LLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                           ...++||+|++...   ......+++++.++|+|||.+++.+.+.
T Consensus       107 -----~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  151 (219)
T 3dlc_A          107 -----IEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFG  151 (219)
T ss_dssp             -----SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             -----CCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccC
Confidence                 12478999999853   2455789999999999999999976553

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.67  E-value=7.5e-15  Score=111.66  Aligned_cols=113  Identities=20%  Similarity=0.265  Sum_probs=91.7

Q ss_pred             HHHHHHHHHH-HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            7 HGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         7 ~~~ll~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      +..++..+.. ..++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++..+++.  +++.++|..+.++
T Consensus       107 t~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~---g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~  181 (254)
T 2nxc_A          107 TRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALP  181 (254)
T ss_dssp             HHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGG
T ss_pred             HHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHh---CCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCc
Confidence            3444444443 356789999999999999998875   339999999999999999999988765  8999999877532


Q ss_pred             HHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           86 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                              .++||+|+++........+++.+.++|+|||++++....
T Consensus       182 --------~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~~~  220 (254)
T 2nxc_A          182 --------FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             --------GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             --------CCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEeec
Confidence                    368999999865556678899999999999999996544

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.66  E-value=5.1e-16  Score=117.85  Aligned_cols=104  Identities=19%  Similarity=0.278  Sum_probs=88.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++.+|||||||+|..++.++...+ +.+|+++|+++.+++.++++++..++.+ ++++++|+.+.....    ...++||
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~l~~-v~~~~~d~~~~~~~~----~~~~~fD  153 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRP-ELELVLVDATRKKVAFVERAIEVLGLKG-ARALWGRAEVLAREA----GHREAYA  153 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCSS-EEEEECCHHHHTTST----TTTTCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCCc-eEEEECcHHHhhccc----ccCCCce
Confidence            567999999999999999998876 7899999999999999999999999875 999999997753210    0137899


Q ss_pred             EEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           99 YAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        99 ~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|++... .....+++.+.++|+|||.+++-
T Consensus       154 ~I~s~a~-~~~~~ll~~~~~~LkpgG~l~~~  183 (249)
T 3g89_A          154 RAVARAV-APLCVLSELLLPFLEVGGAAVAM  183 (249)
T ss_dssp             EEEEESS-CCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEECCc-CCHHHHHHHHHHHcCCCeEEEEE
Confidence            9999753 45678899999999999998873

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.66  E-value=3.1e-15  Score=115.00  Aligned_cols=116  Identities=18%  Similarity=0.216  Sum_probs=94.9

Q ss_pred             cHHHHHHHHHHHHH--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            4 LTIHGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         4 ~~~~~~ll~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      .+.+..++..++..  .++.+|||+|||+|..+..++...+ ..+++++|+++.+++.+++++...++. +++++++|..
T Consensus        92 r~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~  169 (276)
T 2b3t_A           92 RPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWF  169 (276)
T ss_dssp             CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTT
T ss_pred             CchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchh
Confidence            34556666666665  4678999999999999999998876 789999999999999999999988876 6999999987


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCC----------------------------cccHHHHHHHHhccCCCeEEEEe
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.++        .++||+|+++...                            ..+..+++.+.+.|+|||++++.
T Consensus       170 ~~~~--------~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~  237 (276)
T 2b3t_A          170 SALA--------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  237 (276)
T ss_dssp             GGGT--------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhcc--------cCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            6422        3689999997421                            23466788899999999999986

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.66  E-value=1.5e-15  Score=111.77  Aligned_cols=120  Identities=13%  Similarity=0.186  Sum_probs=75.8

Q ss_pred             cHHHHHHHHHHHHH----cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc
Q 029803            4 LTIHGQLMAMLLRL----VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   79 (187)
Q Consensus         4 ~~~~~~ll~~l~~~----~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   79 (187)
                      .+.+..++..+...    .++.+|||+|||+|..+..+++..+ +.+++++|+++.+++.+++++...+.  +++++++|
T Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d   87 (215)
T 4dzr_A           11 RPDTEVLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACP-GVSVTAVDLSMDALAVARRNAERFGA--VVDWAAAD   87 (215)
T ss_dssp             CHHHHHHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCT-TEEEEEEECC---------------------CCHHH
T ss_pred             CccHHHHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcc
Confidence            34556666666654    5778999999999999999999876 78999999999999999999987776  68999999


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCCc-----------------------------ccHHHHHHHHhccCCCeE-EEEe
Q 029803           80 ALSVLDQLLKYSENEGSFDYAFVDADKD-----------------------------NYCNYHERLMKLLKVGGI-AVYD  129 (187)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~D~i~~d~~~~-----------------------------~~~~~~~~~~~~L~~gG~-lv~~  129 (187)
                      +.+.++....   ..++||+|+++....                             .+..+++.+.++|+|||+ +++.
T Consensus        88 ~~~~~~~~~~---~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  164 (215)
T 4dzr_A           88 GIEWLIERAE---RGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLE  164 (215)
T ss_dssp             HHHHHHHHHH---TTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEE
T ss_pred             hHhhhhhhhh---ccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            9885543111   137999999963210                             015677778899999999 5553

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.66  E-value=1.2e-16  Score=122.15  Aligned_cols=108  Identities=19%  Similarity=0.215  Sum_probs=91.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..++.. + ..+|+++|+++.+++.+++++...++.++++++++|+.+. +      ...++
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~------~~~~~  114 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH-V-TGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDL-P------FRNEE  114 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT-C-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C------CCTTC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhC-C------CCCCC
Confidence            456789999999999999999987 3 6799999999999999999999999888899999998653 1      12478


Q ss_pred             eeEEEEeCCC--cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           97 FDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        97 ~D~i~~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ||+|++....  -....+++++.++|+|||++++.+..+
T Consensus       115 fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  153 (267)
T 3kkz_A          115 LDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSECSW  153 (267)
T ss_dssp             EEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEEEEE
T ss_pred             EEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEEeee
Confidence            9999987532  256778999999999999999987654

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.66  E-value=6.2e-15  Score=113.87  Aligned_cols=107  Identities=18%  Similarity=0.265  Sum_probs=88.0

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC--C-CCcEEEEEcchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--V-DHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ..++++|||||||+|..+..+++..+ ..+++++|+++.+++.+++++...+  + .++++++.+|+.+.++..      
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  148 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKS-VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------  148 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCC-CCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC------
Confidence            35788999999999999999998654 6899999999999999999886532  2 357999999998876542      


Q ss_pred             CCceeEEEEeCCCc-----c-c-HHHHHHHHhccCCCeEEEEeC
Q 029803           94 EGSFDYAFVDADKD-----N-Y-CNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        94 ~~~~D~i~~d~~~~-----~-~-~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .++||+|++|....     . + ..+++.+.+.|+|||++++..
T Consensus       149 ~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          149 TNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             CSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            47899999986321     1 1 689999999999999999863

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.66  E-value=7.5e-16  Score=114.80  Aligned_cols=113  Identities=11%  Similarity=0.103  Sum_probs=91.9

Q ss_pred             HHHHHHHc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803           11 MAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   89 (187)
Q Consensus        11 l~~l~~~~-~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   89 (187)
                      |+.+.... ++.+|+|||||+|+.++.++...+ ..+|+++|+++.+++.|++|++.+++.+++++..+|..+.++.   
T Consensus         6 L~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~---   81 (225)
T 3kr9_A            6 LELVASFVSQGAILLDVGSDHAYLPIELVERGQ-IKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEE---   81 (225)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---
T ss_pred             HHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhccc---
Confidence            44455544 456899999999999999998755 6799999999999999999999999988999999999764332   


Q ss_pred             cccCCCceeEEEEeC-CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           90 YSENEGSFDYAFVDA-DKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~-~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                          ..+||+|++.+ .......+++.+.+.|+++|.+++...
T Consensus        82 ----~~~~D~IviaG~Gg~~i~~Il~~~~~~L~~~~~lVlq~~  120 (225)
T 3kr9_A           82 ----TDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPN  120 (225)
T ss_dssp             ----GGCCCEEEEEEECHHHHHHHHHHTGGGCTTCCEEEEEES
T ss_pred             ----CcCCCEEEEcCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence                13699998764 223357788888999999999999644

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.66  E-value=3.5e-15  Score=121.53  Aligned_cols=159  Identities=18%  Similarity=0.206  Sum_probs=117.0

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      +.....++..++...++.+|||+|||+|..+..++...+ +++|+++|+++.+++.+++++...++.  ++++++|+.+.
T Consensus       231 qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~~~~~l~~~~~~~~~~g~~--~~~~~~D~~~~  307 (429)
T 1sqg_A          231 QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMK--ATVKQGDGRYP  307 (429)
T ss_dssp             CCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCC--CEEEECCTTCT
T ss_pred             eCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHHcCCC--eEEEeCchhhc
Confidence            345566677777777889999999999999999999886 589999999999999999999988873  78999998765


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCCCcccc
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLWGGTVA  138 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~  138 (187)
                      .+.+     ..++||+|++|+....                         ...+++.+.++|+|||.+++..+.+...  
T Consensus       308 ~~~~-----~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~--  380 (429)
T 1sqg_A          308 SQWC-----GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE--  380 (429)
T ss_dssp             HHHH-----TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG--
T ss_pred             hhhc-----ccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChh--
Confidence            4333     1368999999863211                         1367888999999999999976554221  


Q ss_pred             CCCCCCCCCcccchHHHHHHHHHHhhcCCCeEE-----------Eeeec---CCceEEEEEcC
Q 029803          139 VPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL-----------SHVAL---GDGITICRRIF  187 (187)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~lp~---~~G~~~~~~~~  187 (187)
                         +         -...+..|   +..+++++.           .++|.   .+|+-+|+-+|
T Consensus       381 ---e---------ne~~v~~~---l~~~~~~~~~~~~~~~~~~~~~~P~~~~~dGff~a~l~k  428 (429)
T 1sqg_A          381 ---E---------NSLQIKAF---LQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK  428 (429)
T ss_dssp             ---G---------THHHHHHH---HHHCTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEEEC
T ss_pred             ---h---------HHHHHHHH---HHhCCCCEEeCCCCCCCCeEEECCCCCCCCceEEEEEEE
Confidence               1         11124444   444565543           44563   38998888765

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.65  E-value=1.9e-15  Score=112.04  Aligned_cols=105  Identities=14%  Similarity=0.278  Sum_probs=87.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|..+..++...+ +.+++++|+++.+++.|++++...++. +++++++|+.+....+     ..++|
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~giD~s~~~l~~a~~~~~~~~~~-nv~~~~~d~~~l~~~~-----~~~~~  109 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVF-----EPGEV  109 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHC-----CTTSC
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCC-CCCEEEEEechHHHHHHHHHHHHcCCC-CEEEEeCCHHHHHhhc-----CcCCc
Confidence            3567999999999999999999876 789999999999999999999988875 5999999998743222     24689


Q ss_pred             eEEEEeCCCc-----------ccHHHHHHHHhccCCCeEEEEe
Q 029803           98 DYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        98 D~i~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |.|++....+           ....+++.+.+.|+|||.+++.
T Consensus       110 d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~  152 (213)
T 2fca_A          110 KRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  152 (213)
T ss_dssp             CEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             CEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEE
Confidence            9998864211           1467899999999999999884

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.65  E-value=5.7e-16  Score=114.18  Aligned_cols=112  Identities=20%  Similarity=0.215  Sum_probs=90.8

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      .+.....+...+...++.+|||+|||+|..+..+++.   ..+|+++|+++++++.+++++...++. +++++++|+.+.
T Consensus        62 ~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~  137 (210)
T 3lbf_A           62 QPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQG  137 (210)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGC
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccC
Confidence            3444555555556678899999999999999999987   579999999999999999999988876 699999999764


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...       .++||+|+++.......   +.+.++|+|||++++.
T Consensus       138 ~~~-------~~~~D~i~~~~~~~~~~---~~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          138 WQA-------RAPFDAIIVTAAPPEIP---TALMTQLDEGGILVLP  173 (210)
T ss_dssp             CGG-------GCCEEEEEESSBCSSCC---THHHHTEEEEEEEEEE
T ss_pred             Ccc-------CCCccEEEEccchhhhh---HHHHHhcccCcEEEEE
Confidence            322       37899999986544433   3578999999999985

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.65  E-value=1.1e-15  Score=113.29  Aligned_cols=105  Identities=16%  Similarity=0.282  Sum_probs=87.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|..+..++...| +.+++++|+++.+++.|++++...++ .+++++++|+.+. +..    ...++|
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~-~~~----~~~~~~  112 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDL-TDY----FEDGEI  112 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCG-GGT----SCTTCC
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHH-Hhh----cCCCCC
Confidence            3577999999999999999999887 78999999999999999999998887 4799999998763 211    124689


Q ss_pred             eEEEEeCCCc-----------ccHHHHHHHHhccCCCeEEEEe
Q 029803           98 DYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        98 D~i~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++.....           .+..+++.+.++|+|||++++.
T Consensus       113 D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  155 (214)
T 1yzh_A          113 DRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  155 (214)
T ss_dssp             SEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             CEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEE
Confidence            9999985322           2367999999999999999884

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.64  E-value=1.8e-14  Score=115.83  Aligned_cols=109  Identities=11%  Similarity=0.202  Sum_probs=89.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++++|||+|||+|..++.++...  ..+|+++|+++.+++.|++|++.+++.+ +++++++|+.+.++.+...   ..+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g--a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~---~~~  285 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH---HLT  285 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT---TCC
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHh---CCC
Confidence            578899999999999999999852  3599999999999999999999998875 7999999999877665322   458


Q ss_pred             eeEEEEeCCCc------------ccHHHHHHHHhccCCCeEEEEeCC
Q 029803           97 FDYAFVDADKD------------NYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        97 ~D~i~~d~~~~------------~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ||+|++|+...            .+..+++.+.++|+|||++++...
T Consensus       286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~  332 (385)
T 2b78_A          286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  332 (385)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            99999986431            134466777899999999998643

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.64  E-value=9.8e-16  Score=115.10  Aligned_cols=115  Identities=18%  Similarity=0.186  Sum_probs=87.2

Q ss_pred             HHHHHHHHH--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            9 QLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         9 ~ll~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      +++..+...  .++.+|||||||+|..+..++...  ..+|+++|+++.+++.|+++....+  .+++++++|+.+..+.
T Consensus        48 ~~~~~l~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~  123 (236)
T 1zx0_A           48 PYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPT  123 (236)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGG
T ss_pred             HHHHHHHhhcCCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcc
Confidence            344444443  466799999999999999997642  3499999999999999999887655  4699999999876433


Q ss_pred             HhhcccCCCceeEEEEeCCC--------cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           87 LLKYSENEGSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +     ..++||+|++|...        .....+++++.++|||||++++.+..
T Consensus       124 ~-----~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          124 L-----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             S-----CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             c-----CCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence            3     25789999994211        11235689999999999999986543

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.64  E-value=2.3e-15  Score=116.00  Aligned_cols=104  Identities=15%  Similarity=0.141  Sum_probs=89.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..++.++...+ . +|+++|+++.+++.++++++.+++.++++++++|+.+...        .++|
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~-~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~--------~~~f  193 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGK-A-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENIA  193 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTC-C-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSCE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCC-C-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc--------cCCc
Confidence            4578999999999999999998754 2 8999999999999999999999988889999999976532        3789


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |+|+++.. .....+++.+.++|+|||++++....
T Consensus       194 D~Vi~~~p-~~~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          194 DRILMGYV-VRTHEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             EEEEECCC-SSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             cEEEECCc-hhHHHHHHHHHHHCCCCeEEEEEEee
Confidence            99999864 34467888999999999999986554

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.64  E-value=2.1e-15  Score=112.62  Aligned_cols=103  Identities=21%  Similarity=0.305  Sum_probs=84.0

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ..++.+|||+||| +|..+..++...  +.+|+++|+++.+++.+++++..++.  +++++++|+... ..+     ..+
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~-~~~-----~~~  122 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGII-KGV-----VEG  122 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSS-TTT-----CCS
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhh-hhc-----ccC
Confidence            4577899999999 999999999874  57999999999999999999998887  699999996322 111     247


Q ss_pred             ceeEEEEeCCC----------------------cccHHHHHHHHhccCCCeEEEEe
Q 029803           96 SFDYAFVDADK----------------------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d~~~----------------------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +||+|+++...                      ..+..+++.+.++|+|||.+++.
T Consensus       123 ~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (230)
T 3evz_A          123 TFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY  178 (230)
T ss_dssp             CEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence            89999987421                      11367899999999999999884

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.64  E-value=4.7e-15  Score=111.61  Aligned_cols=107  Identities=18%  Similarity=0.215  Sum_probs=84.1

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh------cCCCCcEEEEEcchHHHHHHHhhc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK------AGVDHKINFIESEALSVLDQLLKY   90 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~------~~~~~~~~~~~~d~~~~~~~~~~~   90 (187)
                      ..++.+|||||||+|..+..+|...+ +..++++|+++.+++.|++++..      .+. .+++++++|+.+.++...  
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~--  119 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFP-DTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFF--  119 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGST-TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHC--
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCC-CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhC--
Confidence            34567899999999999999999876 78999999999999999988764      233 469999999977444332  


Q ss_pred             ccCCCceeEEEEeCCCcc-----------cHHHHHHHHhccCCCeEEEEe
Q 029803           91 SENEGSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~~~-----------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                        ..++||.|++......           ...+++.+.++|+|||.+++.
T Consensus       120 --~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          120 --YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             --CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             --CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEE
Confidence              2478999988642211           247899999999999999874

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.64  E-value=9e-16  Score=118.41  Aligned_cols=114  Identities=17%  Similarity=0.248  Sum_probs=93.3

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      .++..+....++.+|||||||+|.++..++..++.+.+|+++|+++.+++.+++++...+.  +++++++|+.+. +   
T Consensus        12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~-~---   85 (284)
T 3gu3_A           12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI-E---   85 (284)
T ss_dssp             HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS--EEEEEESCTTTC-C---
T ss_pred             HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcchhhc-C---
Confidence            3444444566889999999999999999999887568999999999999999999886554  799999998753 1   


Q ss_pred             hcccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           89 KYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                          ..++||+|++...   ..+...+++++.++|+|||++++.+..
T Consensus        86 ----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           86 ----LNDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             ----CSSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ----cCCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence                1368999999753   345578999999999999999987655

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.64  E-value=1.7e-15  Score=113.12  Aligned_cols=113  Identities=13%  Similarity=0.134  Sum_probs=91.8

Q ss_pred             HHHHHHHc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803           11 MAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   89 (187)
Q Consensus        11 l~~l~~~~-~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   89 (187)
                      |+.+.... ++.+|+|||||+|+.++.++...+ ..+|+++|+++.+++.|++|++.+++.+++++.++|..+.+..   
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~---   87 (230)
T 3lec_A           12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEE---   87 (230)
T ss_dssp             HHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---
T ss_pred             HHHHHHhCCCCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcccc---
Confidence            34444444 556899999999999999998754 6799999999999999999999999998999999999875422   


Q ss_pred             cccCCCceeEEEEeC-CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           90 YSENEGSFDYAFVDA-DKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~-~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                          .++||+|++.+ .......+++...+.|+++|.+++...
T Consensus        88 ----~~~~D~IviaGmGg~lI~~IL~~~~~~l~~~~~lIlqp~  126 (230)
T 3lec_A           88 ----ADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQPN  126 (230)
T ss_dssp             ----GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             ----ccccCEEEEeCCchHHHHHHHHHHHHHhCcCCEEEEECC
Confidence                23799998754 234466788888899999999999754

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.63  E-value=7.1e-16  Score=118.49  Aligned_cols=117  Identities=15%  Similarity=0.129  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      +...+.+..+....++.+|||+|||+|..++.+++..+ .++|+++|+++++++.++++++.+++. +++++++|+.+. 
T Consensus       105 ~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~-  181 (272)
T 3a27_A          105 GNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDV-  181 (272)
T ss_dssp             GGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGC-
T ss_pred             CchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHc-
Confidence            33334444444456778999999999999999999865 679999999999999999999998876 488999999765 


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +.       .++||+|+++... ....+++.+.+.|+|||++++....
T Consensus       182 ~~-------~~~~D~Vi~d~p~-~~~~~l~~~~~~LkpgG~l~~s~~~  221 (272)
T 3a27_A          182 EL-------KDVADRVIMGYVH-KTHKFLDKTFEFLKDRGVIHYHETV  221 (272)
T ss_dssp             CC-------TTCEEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             Cc-------cCCceEEEECCcc-cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            32       3689999998754 6677889999999999999986544

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.63  E-value=1.2e-15  Score=112.03  Aligned_cols=100  Identities=14%  Similarity=0.123  Sum_probs=87.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++...++.+ ++++++|+.+..        ..++||
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--------~~~~~D  134 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLEN-IEPVQSRVEEFP--------SEPPFD  134 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCSS-EEEEECCTTTSC--------CCSCEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEecchhhCC--------ccCCcC
Confidence            478999999999999999998876 7899999999999999999999888765 999999987642        136899


Q ss_pred             EEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           99 YAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        99 ~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|++.. ...+..+++.+.++|+|||++++.
T Consensus       135 ~i~~~~-~~~~~~~l~~~~~~L~~gG~l~~~  164 (207)
T 1jsx_A          135 GVISRA-FASLNDMVSWCHHLPGEQGRFYAL  164 (207)
T ss_dssp             EEECSC-SSSHHHHHHHHTTSEEEEEEEEEE
T ss_pred             EEEEec-cCCHHHHHHHHHHhcCCCcEEEEE
Confidence            999754 456788999999999999999985

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.63  E-value=7.7e-15  Score=118.33  Aligned_cols=112  Identities=20%  Similarity=0.281  Sum_probs=93.4

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC-CCcEEEEEcchHHHHHHHhhcccC
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV-DHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ....++++|||+|||+|..++.++...  ..+|+++|+++.+++.|++|++.+++ .++++++++|+.+.++.+...   
T Consensus       216 ~~~~~~~~VLDl~cG~G~~sl~la~~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~---  290 (396)
T 3c0k_A          216 RRYVENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDR---  290 (396)
T ss_dssp             HHHCTTCEEEEESCTTCSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHT---
T ss_pred             HHhhCCCeEEEeeccCCHHHHHHHHCC--CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhc---
Confidence            334688999999999999999999852  36999999999999999999999888 657999999999887654322   


Q ss_pred             CCceeEEEEeCCC------------cccHHHHHHHHhccCCCeEEEEeCC
Q 029803           94 EGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        94 ~~~~D~i~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .++||+|++|...            ..+..++..+.++|+|||++++...
T Consensus       291 ~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          291 GEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             TCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            4689999999643            4567788999999999999988643

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.63  E-value=3.3e-15  Score=122.37  Aligned_cols=124  Identities=17%  Similarity=0.214  Sum_probs=98.3

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      ......++..++...++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++..++. +++++++|+.+.
T Consensus       244 qd~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~  322 (450)
T 2yxl_A          244 QEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIK-IVKPLVKDARKA  322 (450)
T ss_dssp             CCHHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCTTCC
T ss_pred             cCchhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEEEcChhhc
Confidence            3445566677777778889999999999999999998863489999999999999999999998875 599999998653


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCccc-------------------------HHHHHHHHhccCCCeEEEEeCCCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDNY-------------------------CNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .+.+     ..++||+|++|+.....                         ..+++.+.++|+|||.+++..+..
T Consensus       323 ~~~~-----~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~  392 (450)
T 2yxl_A          323 PEII-----GEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI  392 (450)
T ss_dssp             SSSS-----CSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred             chhh-----ccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            2111     12679999998532111                         467899999999999999876653

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.63  E-value=5.4e-15  Score=114.25  Aligned_cols=114  Identities=18%  Similarity=0.223  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHHH---HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            5 TIHGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         5 ~~~~~ll~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      +.+..++..++.   ..++.+|||+|||+|..++.++.. + +.+|+++|+++++++.|++|+..+++.++++++++|+.
T Consensus       106 ~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~-~-~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~  183 (284)
T 1nv8_A          106 PETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFL  183 (284)
T ss_dssp             TTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTT
T ss_pred             hhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcch
Confidence            344555555444   236689999999999999999998 5 88999999999999999999999998878999999997


Q ss_pred             HHHHHHhhcccCCCce---eEEEEeCCCc----------------------ccHHHHHHHH-hccCCCeEEEEe
Q 029803           82 SVLDQLLKYSENEGSF---DYAFVDADKD----------------------NYCNYHERLM-KLLKVGGIAVYD  129 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~---D~i~~d~~~~----------------------~~~~~~~~~~-~~L~~gG~lv~~  129 (187)
                      +.++         ++|   |+|+++....                      +...+++.+. +.++|||++++.
T Consensus       184 ~~~~---------~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e  248 (284)
T 1nv8_A          184 EPFK---------EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  248 (284)
T ss_dssp             GGGG---------GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             hhcc---------cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence            6422         467   9999974211                      0126889999 999999999985

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.62  E-value=2e-15  Score=112.54  Aligned_cols=115  Identities=20%  Similarity=0.290  Sum_probs=88.5

Q ss_pred             HHHHHHH-HHcCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCcchHHHHHHHHHhcCC----CCcEEEEEcc
Q 029803            9 QLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESE   79 (187)
Q Consensus         9 ~ll~~l~-~~~~~~~vLeiG~g~G~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d   79 (187)
                      .++..+. ...++.+|||||||+|+.+..++....    +.++|+++|+++++++.+++++...++    ..+++++.+|
T Consensus        69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  148 (227)
T 2pbf_A           69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKN  148 (227)
T ss_dssp             HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECC
T ss_pred             HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECC
Confidence            3444443 356778999999999999999999864    467999999999999999999988773    3469999999


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           80 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.+..+....   ..++||+|+++.....   +++.+.++|+|||++++.
T Consensus       149 ~~~~~~~~~~---~~~~fD~I~~~~~~~~---~~~~~~~~LkpgG~lv~~  192 (227)
T 2pbf_A          149 IYQVNEEEKK---ELGLFDAIHVGASASE---LPEILVDLLAENGKLIIP  192 (227)
T ss_dssp             GGGCCHHHHH---HHCCEEEEEECSBBSS---CCHHHHHHEEEEEEEEEE
T ss_pred             hHhcccccCc---cCCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEE
Confidence            8764210000   0268999999875443   357788999999999885

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.62  E-value=4.2e-15  Score=114.51  Aligned_cols=104  Identities=17%  Similarity=0.201  Sum_probs=87.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++.+|||||||+|..+..++..   +.+++++|+++.+++.+++++...++..+++++++|+.+..+.      ..++||
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~~fD  138 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH------LETPVD  138 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG------CSSCEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh------cCCCce
Confidence            3569999999999999999986   5799999999999999999999888877899999999765321      257999


Q ss_pred             EEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           99 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        99 ~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +|++...   ..+...+++++.++|+|||++++...
T Consensus       139 ~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  174 (285)
T 4htf_A          139 LILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFY  174 (285)
T ss_dssp             EEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            9999753   34567899999999999999998654

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.62  E-value=2.1e-15  Score=113.48  Aligned_cols=113  Identities=11%  Similarity=0.142  Sum_probs=91.5

Q ss_pred             HHHHHHHc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803           11 MAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   89 (187)
Q Consensus        11 l~~l~~~~-~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   89 (187)
                      |+.+.... ++.+|||||||+|+.++.++...+ ..+|+++|+++.+++.|++|++.+++.+++++..+|..+.+..   
T Consensus        12 L~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~---   87 (244)
T 3gnl_A           12 LEKVASYITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEK---   87 (244)
T ss_dssp             HHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCG---
T ss_pred             HHHHHHhCCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCc---
Confidence            34444433 457899999999999999998754 6799999999999999999999999988999999999875321   


Q ss_pred             cccCCCceeEEEEeC-CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           90 YSENEGSFDYAFVDA-DKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~-~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                          ..+||+|++.+ .......+++...+.|++++.+|+...
T Consensus        88 ----~~~~D~IviagmGg~lI~~IL~~~~~~L~~~~~lIlq~~  126 (244)
T 3gnl_A           88 ----KDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQPN  126 (244)
T ss_dssp             ----GGCCCEEEEEEECHHHHHHHHHHTGGGGTTCCEEEEEES
T ss_pred             ----cccccEEEEeCCchHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence                13699998754 334567788888899999999999743

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.62  E-value=1.4e-14  Score=116.75  Aligned_cols=108  Identities=23%  Similarity=0.345  Sum_probs=90.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++++|||+|||+|..++.++.. + ..+|+++|+++.+++.++++++.+++.++++++++|+.+.++.+...   .++||
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g-~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~---~~~fD  291 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-G-ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK---GEKFD  291 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT---TCCEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhh---CCCCC
Confidence            7889999999999999999985 2 46999999999999999999999888767999999999876654322   46899


Q ss_pred             EEEEeCCC------------cccHHHHHHHHhccCCCeEEEEeCC
Q 029803           99 YAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        99 ~i~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +|++|...            ..+..++..+.++|+|||++++...
T Consensus       292 ~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  336 (396)
T 2as0_A          292 IVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC  336 (396)
T ss_dssp             EEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            99999643            3456788899999999998887543

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.62  E-value=2.7e-15  Score=115.34  Aligned_cols=112  Identities=21%  Similarity=0.282  Sum_probs=93.0

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      ..+...+...++.+|||+|||+|..+..+++.+.+..+++++|+++++++.++++++..++.++++++.+|+.+.+    
T Consensus       102 ~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----  177 (277)
T 1o54_A          102 SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF----  177 (277)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC----
T ss_pred             HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc----
Confidence            3444445566788999999999999999999864478999999999999999999998887678999999987642    


Q ss_pred             hcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           89 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                          ..++||+|+++.  .....+++.+.++|+|||.+++..
T Consensus       178 ----~~~~~D~V~~~~--~~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          178 ----DEKDVDALFLDV--PDPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             ----SCCSEEEEEECC--SCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             ----cCCccCEEEECC--cCHHHHHHHHHHHcCCCCEEEEEe
Confidence                136899999975  344578899999999999999854

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.61  E-value=1.1e-15  Score=118.42  Aligned_cols=114  Identities=15%  Similarity=0.285  Sum_probs=86.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC---------------------------
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---------------------------   70 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---------------------------   70 (187)
                      .++++|||||||+|..+..++..++ ..+|+++|+++.+++.|++++...+..                           
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKR  123 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC---------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence            4678999999999999999999886 689999999999999999987654322                           


Q ss_pred             ------------------------------CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC---------cccHH
Q 029803           71 ------------------------------HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK---------DNYCN  111 (187)
Q Consensus        71 ------------------------------~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~---------~~~~~  111 (187)
                                                    .++++.++|.......+..  ...++||+|++....         .....
T Consensus       124 ~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~--~~~~~fD~I~~~~vl~~ihl~~~~~~~~~  201 (292)
T 3g07_A          124 SCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVE--AQTPEYDVVLCLSLTKWVHLNWGDEGLKR  201 (292)
T ss_dssp             ------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHT--TCCCCEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred             ccccchhhhccCccccccccccccccccccccceEEecccccCcccccc--ccCCCcCEEEEChHHHHhhhcCCHHHHHH
Confidence                                          5799999998632211110  135799999987532         14567


Q ss_pred             HHHHHHhccCCCeEEEEeCCCCC
Q 029803          112 YHERLMKLLKVGGIAVYDNTLWG  134 (187)
Q Consensus       112 ~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      +++++.++|+|||++++....|.
T Consensus       202 ~l~~~~~~LkpGG~lil~~~~~~  224 (292)
T 3g07_A          202 MFRRIYRHLRPGGILVLEPQPWS  224 (292)
T ss_dssp             HHHHHHHHEEEEEEEEEECCCHH
T ss_pred             HHHHHHHHhCCCcEEEEecCCch
Confidence            89999999999999999765543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.61  E-value=2.1e-15  Score=118.22  Aligned_cols=114  Identities=21%  Similarity=0.327  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      .....+...+...++.+|||||||+|..+..+++..+..++|+++|+++++++.+++++...++.+ +++..+|+.+..+
T Consensus        62 ~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~-v~~~~~d~~~~~~  140 (317)
T 1dl5_A           62 SLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN-VIFVCGDGYYGVP  140 (317)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCCG
T ss_pred             HHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCC-eEEEECChhhccc
Confidence            444444445566788999999999999999999876535789999999999999999999888765 9999999876432


Q ss_pred             HHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           86 QLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .       .++||+|+++...+...   +.+.++|+|||++++..
T Consensus       141 ~-------~~~fD~Iv~~~~~~~~~---~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          141 E-------FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             G-------GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEEB
T ss_pred             c-------CCCeEEEEEcCCHHHHH---HHHHHhcCCCcEEEEEE
Confidence            2       36899999986544433   56778999999999964

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.61  E-value=5.5e-15  Score=113.01  Aligned_cols=118  Identities=16%  Similarity=0.283  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHH---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            7 HGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         7 ~~~ll~~l~~~---~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      ...++..++..   .++.+|||||||+|..+..+++..  +.+|+++|+++.+++.+++++...++.+++++..+|+.+.
T Consensus        46 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  123 (273)
T 3bus_A           46 TDRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDL  123 (273)
T ss_dssp             HHHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccC
Confidence            34455555543   467899999999999999999865  5799999999999999999999988888899999998652


Q ss_pred             HHHHhhcccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                       +      ...++||+|++...   ..+...+++++.++|+|||.+++.+...
T Consensus       124 -~------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~  169 (273)
T 3bus_A          124 -P------FEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVL  169 (273)
T ss_dssp             -C------SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred             -C------CCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeec
Confidence             1      12478999998752   3456788999999999999999976553

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.61  E-value=4.5e-15  Score=109.23  Aligned_cols=115  Identities=10%  Similarity=-0.006  Sum_probs=82.6

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC-----------CCCc
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-----------VDHK   72 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-----------~~~~   72 (187)
                      ++...+++..+ ...++.+|||+|||+|..+.++++.   +.+|+++|+|+.+++.|+++.....           ...+
T Consensus         8 ~~~l~~~~~~l-~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~   83 (203)
T 1pjz_A            8 NKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG   83 (203)
T ss_dssp             THHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSS
T ss_pred             CHHHHHHHHhc-ccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCc
Confidence            33444444432 2347789999999999999999986   5699999999999999998764210           1246


Q ss_pred             EEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEE
Q 029803           73 INFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        73 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ++++++|+.+....-      .++||+|++....     .....+++++.++|||||.+++
T Consensus        84 v~~~~~d~~~l~~~~------~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l  138 (203)
T 1pjz_A           84 IEIWCGDFFALTARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLL  138 (203)
T ss_dssp             SEEEEECCSSSTHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEE
T ss_pred             cEEEECccccCCccc------CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            899999987642210      1589999975422     2234578999999999998443

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.61  E-value=1.5e-15  Score=118.25  Aligned_cols=109  Identities=16%  Similarity=0.104  Sum_probs=89.1

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..++....++.+|+++|+++.+++.+++++...++.++++++++|+.+. +       ..++
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-------~~~~  187 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKL-D-------TREG  187 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGC-C-------CCSC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcC-C-------ccCC
Confidence            4677899999999999999986333347899999999999999999999888888899999998763 1       1378


Q ss_pred             eeEEEEeCCC------cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           97 FDYAFVDADK------DNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        97 ~D~i~~d~~~------~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ||+|++....      .....+++++.++|+|||++++.+...
T Consensus       188 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  230 (305)
T 3ocj_A          188 YDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP  230 (305)
T ss_dssp             EEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred             eEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCC
Confidence            9999986522      223347999999999999999977553

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.61  E-value=7.4e-14  Score=100.81  Aligned_cols=147  Identities=15%  Similarity=0.052  Sum_probs=103.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..++.++...| ..+|+++|+++.+++.+++++...+...++++  .|..+..+        .++|
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p-~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~--------~~~~  116 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENE-KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVY--------KGTY  116 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSC-CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHT--------TSEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCC--------CCCc
Confidence            6689999999999999999988766 67999999999999999999999998766777  55544322        4789


Q ss_pred             eEEEEeCCCc---ccHHHHHHHHhccCCCeEEEEeCCC-CCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEe
Q 029803           98 DYAFVDADKD---NYCNYHERLMKLLKVGGIAVYDNTL-WGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSH  173 (187)
Q Consensus        98 D~i~~d~~~~---~~~~~~~~~~~~L~~gG~lv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  173 (187)
                      |+|+.--.-+   +....+..+++.|+|||++|--++- ..|.-..-...        .   -+.|.+.+ ....+....
T Consensus       117 DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfptksl~Gr~~gm~~~--------Y---~~~~~~~~-~~~~~~~~~  184 (200)
T 3fzg_A          117 DVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLSGKEKGMEEN--------Y---QLWFESFT-KGWIKILDS  184 (200)
T ss_dssp             EEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEECCCCC--CTTCCCC--------H---HHHHHHHT-TTTSCEEEE
T ss_pred             ChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeChHHhcCCCcchhhh--------H---HHHHHHhc-cCcceeeee
Confidence            9998753221   1222344788999999999876522 12221111111        1   23344444 556666777


Q ss_pred             eecCCceEEEEEcC
Q 029803          174 VALGDGITICRRIF  187 (187)
Q Consensus       174 lp~~~G~~~~~~~~  187 (187)
                      +-+++-+....+|+
T Consensus       185 ~~~~nEl~y~~~~~  198 (200)
T 3fzg_A          185 KVIGNELVYITSGF  198 (200)
T ss_dssp             EEETTEEEEEECCC
T ss_pred             eeeCceEEEEEecc
Confidence            78888888887765

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.61  E-value=5.9e-15  Score=114.52  Aligned_cols=117  Identities=15%  Similarity=0.111  Sum_probs=89.9

Q ss_pred             HHHHHHHH--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-CCCCcEEEEEcchHHHHHH
Q 029803           10 LMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQ   86 (187)
Q Consensus        10 ll~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~   86 (187)
                      +...+...  .++.+|||||||+|..+..++..+++..+|+++|+++.+++.+++++... +...+++++++|+.+..  
T Consensus        25 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~--  102 (299)
T 3g5t_A           25 FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK--  102 (299)
T ss_dssp             HHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG--
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC--
Confidence            34444443  47789999999999999999987634889999999999999999999876 44568999999987631  


Q ss_pred             Hhh-cccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeEEEE
Q 029803           87 LLK-YSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        87 ~~~-~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +.. .....++||+|++...  .-+...+++++.++|+|||++++
T Consensus       103 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          103 FLGADSVDKQKIDMITAVECAHWFDFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             GGCTTTTTSSCEEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccccccccCCCeeEEeHhhHHHHhCHHHHHHHHHHhcCCCcEEEE
Confidence            110 0001268999998742  12667899999999999999988

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.61  E-value=2.7e-15  Score=110.94  Aligned_cols=114  Identities=26%  Similarity=0.312  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      +.....+...+...++.+|||||||+|..+..++...++..+++++|+++++++.+++++...++. ++++..+|....+
T Consensus        63 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~  141 (215)
T 2yxe_A           63 IHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGTLGY  141 (215)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGGGCC
T ss_pred             HHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcccCC
Confidence            444444555556677889999999999999999998743589999999999999999999888775 4999999985432


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.       .++||+|++........   +.+.++|+|||.+++.
T Consensus       142 ~~-------~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~lv~~  176 (215)
T 2yxe_A          142 EP-------LAPYDRIYTTAAGPKIP---EPLIRQLKDGGKLLMP  176 (215)
T ss_dssp             GG-------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             CC-------CCCeeEEEECCchHHHH---HHHHHHcCCCcEEEEE
Confidence            21       36899999986544433   4778999999999885

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.61  E-value=2.4e-14  Score=114.39  Aligned_cols=155  Identities=16%  Similarity=0.174  Sum_probs=105.5

Q ss_pred             cCCCEEEEEccc------ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhh
Q 029803           18 VNAKKTIEIGVF------TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLK   89 (187)
Q Consensus        18 ~~~~~vLeiG~g------~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~   89 (187)
                      .++.+|||||||      +|..++.+++.+.++++|+++|+++.+..          ...+++++++|+.+.  ...+..
T Consensus       215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~----------~~~rI~fv~GDa~dlpf~~~l~~  284 (419)
T 3sso_A          215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV----------DELRIRTIQGDQNDAEFLDRIAR  284 (419)
T ss_dssp             TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG----------CBTTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh----------cCCCcEEEEecccccchhhhhhc
Confidence            367899999999      67777777765433799999999999731          235799999998653  222211


Q ss_pred             cccCCCceeEEEEeCCC--cccHHHHHHHHhccCCCeEEEEeCCCCCcc--ccCCCCCCCCCcccchHHHHHHHHHHhhc
Q 029803           90 YSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYDNTLWGGT--VAVPEEQVPDHFRGSSRQAILDLNRSLAD  165 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~--~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  165 (187)
                      .   .++||+|++++.+  .+....+++++++|||||++++.|+...-.  ..... ......++ +...++++.+.+..
T Consensus       285 ~---d~sFDlVisdgsH~~~d~~~aL~el~rvLKPGGvlVi~Dl~tsy~p~f~G~~-~~~~~~~t-ii~~lk~l~D~l~~  359 (419)
T 3sso_A          285 R---YGPFDIVIDDGSHINAHVRTSFAALFPHVRPGGLYVIEDMWTAYWPGFGGQA-DPQECSGT-SLGLLKSLIDAIQH  359 (419)
T ss_dssp             H---HCCEEEEEECSCCCHHHHHHHHHHHGGGEEEEEEEEEECGGGGGCTBTTCCS-STTCCTTS-HHHHHHHHHHHHTG
T ss_pred             c---cCCccEEEECCcccchhHHHHHHHHHHhcCCCeEEEEEecccccCcccCCCc-cCCcchhH-HHHHHHHHHHHhcc
Confidence            1   3789999998654  345678999999999999999998872111  11111 01123344 77778888777663


Q ss_pred             C---------CCe---EEEeeecCCceEEEEEcC
Q 029803          166 D---------PRV---QLSHVALGDGITICRRIF  187 (187)
Q Consensus       166 ~---------~~~---~~~~lp~~~G~~~~~~~~  187 (187)
                      .         |.+   .+.-+.+=+++.+..|.+
T Consensus       360 ~~~~~~~~~~~~~~~~~~~~~h~y~~i~~~~kg~  393 (419)
T 3sso_A          360 QELPSDPNRSPGYVDRNIVGLHVYHNVAFVEKGR  393 (419)
T ss_dssp             GGSCCCTTCCCCHHHHHEEEEEEETTEEEEEESC
T ss_pred             cccCCCcCCCCCccccceeEEEecCcEEEEEecc
Confidence            2         112   145567778888888753

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.61  E-value=1.1e-14  Score=112.17  Aligned_cols=115  Identities=8%  Similarity=0.097  Sum_probs=93.4

Q ss_pred             HHHHHHHHHH---HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            7 HGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         7 ~~~ll~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      ...++..++.   ..++.+|||||||+|..+..+++..+  .+|+++|+++++++.+++++...++..++++..+|+.+.
T Consensus        49 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  126 (287)
T 1kpg_A           49 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF  126 (287)
T ss_dssp             HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC
T ss_pred             HHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhC
Confidence            3344555544   34667999999999999999996553  599999999999999999999888877899999998542


Q ss_pred             HHHHhhcccCCCceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                                .++||+|++...     ......+++++.++|+|||.+++.+...
T Consensus       127 ----------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  171 (287)
T 1kpg_A          127 ----------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITG  171 (287)
T ss_dssp             ----------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             ----------CCCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence                      278999998742     2456789999999999999999977654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.61  E-value=9.5e-15  Score=114.23  Aligned_cols=114  Identities=10%  Similarity=0.133  Sum_probs=93.8

Q ss_pred             HHHHHHHHH---HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            8 GQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         8 ~~ll~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      ...+..++.   ..++.+|||||||+|..+..+++..  +.+|+++|+++++++.+++++...++.+++++..+|+.+. 
T Consensus        76 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-  152 (318)
T 2fk8_A           76 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF-  152 (318)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC-
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC-
Confidence            344555544   3467799999999999999999875  4699999999999999999999888877899999998543 


Q ss_pred             HHHhhcccCCCceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           85 DQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                               +++||+|++...     ......+++++.++|+|||.+++.+...
T Consensus       153 ---------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  197 (318)
T 2fk8_A          153 ---------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVS  197 (318)
T ss_dssp             ---------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred             ---------CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence                     368999998742     2456789999999999999999976654

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.60  E-value=6.3e-16  Score=116.34  Aligned_cols=112  Identities=14%  Similarity=0.155  Sum_probs=89.5

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      ...++..+....++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++...++..+++++++|+.+..+ 
T Consensus        66 ~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-  141 (241)
T 3gdh_A           66 AEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS-  141 (241)
T ss_dssp             HHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG-
T ss_pred             HHHHHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc-
Confidence            3444555555568899999999999999999985   579999999999999999999998886689999999987642 


Q ss_pred             HhhcccCCCceeEEEEeCCCcc---cHHHHHHHHhccCCCeEEEEe
Q 029803           87 LLKYSENEGSFDYAFVDADKDN---YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~~~~---~~~~~~~~~~~L~~gG~lv~~  129 (187)
                             .++||+|+++.....   ....+..+.++|+|||++++.
T Consensus       142 -------~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          142 -------FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             -------GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHH
T ss_pred             -------cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHH
Confidence                   379999999864322   222445567899999997764

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.60  E-value=7.6e-15  Score=117.85  Aligned_cols=106  Identities=24%  Similarity=0.345  Sum_probs=90.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..++.++..   ..+|+++|+++.+++.++++++.+++.+ ++++++|+.+.++.+...   .++||
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~-~~~~~~d~~~~~~~~~~~---~~~fD  281 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGN-VRVLEANAFDLLRRLEKE---GERFD  281 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTT-EEEEESCHHHHHHHHHHT---TCCEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCC-ceEEECCHHHHHHHHHhc---CCCee
Confidence            6789999999999999999986   4699999999999999999999998876 999999999887654322   46899


Q ss_pred             EEEEeCCC------------cccHHHHHHHHhccCCCeEEEEeCC
Q 029803           99 YAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        99 ~i~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +|++|...            ..+..++..+.++|+|||++++...
T Consensus       282 ~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  326 (382)
T 1wxx_A          282 LVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  326 (382)
T ss_dssp             EEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence            99999643            3356788889999999999998644

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.59  E-value=2.8e-15  Score=114.87  Aligned_cols=107  Identities=26%  Similarity=0.319  Sum_probs=90.2

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..++...+ +.+++++|+++.+++.+++++...+.. +++++.+|+.+..       ...++
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~-------~~~~~  105 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNP-DAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLP-------FEDSS  105 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCC-------SCTTC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCC-------CCCCC
Confidence            35778999999999999999999876 789999999999999999999988875 5999999987531       12578


Q ss_pred             eeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           97 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ||+|++...   ..+...+++++.++|+|||++++.+..
T Consensus       106 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (276)
T 3mgg_A          106 FDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGD  144 (276)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             eeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence            999998753   345568899999999999999997644

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.59  E-value=5.1e-15  Score=110.94  Aligned_cols=104  Identities=12%  Similarity=0.106  Sum_probs=85.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++...+...+++++++|+.+..        ..++||
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~fD  134 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR--------PTELFD  134 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC--------CSSCEE
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC--------CCCCee
Confidence            4569999999999999988762   67999999999999999999877655567999999987632        146899


Q ss_pred             EEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           99 YAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        99 ~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +|++...     ......+++++.++|+|||++++.....
T Consensus       135 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  174 (235)
T 3lcc_A          135 LIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPI  174 (235)
T ss_dssp             EEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             EEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence            9998642     2356788999999999999999865543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.59  E-value=2.4e-15  Score=112.65  Aligned_cols=107  Identities=13%  Similarity=0.125  Sum_probs=86.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|+++..+|....++++|+++|+++++++.++++++..   .++..+.+|+.+.....    ...++
T Consensus        75 ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~----~~~~~  147 (233)
T 4df3_A           75 VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYR----HLVEG  147 (233)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGT----TTCCC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccc----cccce
Confidence            568899999999999999999998877899999999999999999886543   36888888875532111    12578


Q ss_pred             eeEEEEeCCC-cccHHHHHHHHhccCCCeEEEEeC
Q 029803           97 FDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        97 ~D~i~~d~~~-~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|+||+|... .+...++.++.+.|||||.+++..
T Consensus       148 vDvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          148 VDGLYADVAQPEQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEEeccCChhHHHHHHHHHHhccCCCEEEEEE
Confidence            9999998643 345678999999999999998853

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.59  E-value=6.7e-15  Score=110.71  Aligned_cols=116  Identities=17%  Similarity=0.208  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      ....+.......++.+|||+|||+|..+..++...   .+++++|+++.+++.+++++...++. ++++.++|+.+. + 
T Consensus         9 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~-~-   82 (239)
T 1xxl_A            9 SLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-P-   82 (239)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-C-
T ss_pred             CcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccC-C-
Confidence            33444555567788999999999999999998864   49999999999999999999888765 599999998642 1 


Q ss_pred             HhhcccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           87 LLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                           ...++||+|++...   ..+...+++++.++|+|||.+++.+...
T Consensus        83 -----~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  127 (239)
T 1xxl_A           83 -----FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA  127 (239)
T ss_dssp             -----SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             -----CCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCC
Confidence                 12478999998753   3456788999999999999999865543

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.59  E-value=4.7e-15  Score=112.73  Aligned_cols=107  Identities=13%  Similarity=0.229  Sum_probs=87.6

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +...++.+|||||||+|..+..++...   .+++++|+++++++.+++++...++. ++++..+|+.+. +      ...
T Consensus        33 l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l-~------~~~  101 (260)
T 1vl5_A           33 AALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P------FTD  101 (260)
T ss_dssp             HTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C------SCT
T ss_pred             hCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhC-C------CCC
Confidence            345678899999999999999999874   49999999999999999999887765 599999998652 1      124


Q ss_pred             CceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           95 GSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        95 ~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ++||+|++...   ..+...+++++.++|+|||.+++.+..
T Consensus       102 ~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~  142 (260)
T 1vl5_A          102 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS  142 (260)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence            78999998753   345678999999999999999986543

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.59  E-value=1.2e-14  Score=119.72  Aligned_cols=121  Identities=14%  Similarity=0.199  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            6 IHGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         6 ~~~~ll~~l~~~~--~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      ....++..++...  ++.+|||+|||+|..+..++..++..++|+++|+++.+++.++++++.+++. +++++++|+.+.
T Consensus       102 ~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~  180 (479)
T 2frx_A          102 ASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVF  180 (479)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTH
T ss_pred             HHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHh
Confidence            3445555566666  7889999999999999999998865689999999999999999999998876 599999998765


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ....      .++||.|++|+....                         ...+++.+.++|||||.|++..+.+
T Consensus       181 ~~~~------~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~  249 (479)
T 2frx_A          181 GAAV------PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL  249 (479)
T ss_dssp             HHHS------TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             hhhc------cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence            3322      468999999853210                         1357888899999999999976654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.59  E-value=5.5e-14  Score=120.51  Aligned_cols=160  Identities=12%  Similarity=0.145  Sum_probs=112.3

Q ss_pred             HHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc------CCCCcEEEEEcchHHHH
Q 029803           11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA------GVDHKINFIESEALSVL   84 (187)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~~~   84 (187)
                      +..++...++.+|||+|||+|..+..+++..++..+|+++|+++.+++.|++++...      +. .+++++++|+.+..
T Consensus       713 LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp  791 (950)
T 3htx_A          713 ALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFD  791 (950)
T ss_dssp             HHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCC
T ss_pred             HHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCC
Confidence            344445568899999999999999999987644579999999999999999977643      33 37999999987631


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcc-----cHHHHHHHHhccCCCeEEEEeCCCC------Ccc----------c-cCCCC
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLW------GGT----------V-AVPEE  142 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~------~~~----------~-~~~~~  142 (187)
                      .       ..++||+|++.....+     ...+++.+.++|+|| .+++.....      .+.          . .....
T Consensus       792 ~-------~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN~eyN~lF~~Lnp~tr~~dPd~~~~~~f  863 (950)
T 3htx_A          792 S-------RLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPNYEFNTILQRSTPETQEENNSEPQLPKF  863 (950)
T ss_dssp             T-------TSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECBGGGHHHHTCC------------CCSSC
T ss_pred             c-------ccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecCchhhhhhhhcccccccccccccccccc
Confidence            1       2478999998754333     234788999999999 666643221      111          0 00001


Q ss_pred             CCCCCcccchHHHHHHHHHHhhcCCCeEEEeeecCCc
Q 029803          143 QVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG  179 (187)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  179 (187)
                      +...+........++.|.+.+....++++...++|+|
T Consensus       864 Rh~DHrFEWTReEFr~Wae~LAer~GYsVefvGVGDg  900 (950)
T 3htx_A          864 RNHDHKFEWTREQFNQWASKLGKRHNYSVEFSGVGGS  900 (950)
T ss_dssp             SCSSCSCCBCHHHHHHHHHHHHHHTTEEEEEEEESSC
T ss_pred             cccCcceeecHHHHHHHHHHHHHhcCcEEEEEccCCC
Confidence            1111111114456788888899899999999999987

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.59  E-value=1.4e-14  Score=117.50  Aligned_cols=114  Identities=14%  Similarity=0.171  Sum_probs=89.3

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHH-------HHHHHhcCCC-CcEEEEEcchHH---H
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIG-------LPIIKKAGVD-HKINFIESEALS---V   83 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a-------~~~~~~~~~~-~~~~~~~~d~~~---~   83 (187)
                      +...++.+|||||||+|..++.++...+ ..+|+++|+++.+++.|       ++++...++. .+++++++|...   .
T Consensus       238 l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~  316 (433)
T 1u2z_A          238 CQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNR  316 (433)
T ss_dssp             TTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHH
T ss_pred             cCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccc
Confidence            3456788999999999999999998765 56899999999999988       8888888853 579999876542   1


Q ss_pred             HHHHhhcccCCCceeEEEEeC--CCcccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           84 LDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      ++..      .++||+|++..  ........++++.+.|+|||.+++.+.+...
T Consensus       317 ~~~~------~~~FDvIvvn~~l~~~d~~~~L~el~r~LKpGG~lVi~d~f~p~  364 (433)
T 1u2z_A          317 VAEL------IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSL  364 (433)
T ss_dssp             HHHH------GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred             cccc------cCCCCEEEEeCccccccHHHHHHHHHHhCCCCeEEEEeeccCCc
Confidence            2221      26899999863  2345667788999999999999998766543

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.59  E-value=4.8e-15  Score=114.75  Aligned_cols=109  Identities=13%  Similarity=0.195  Sum_probs=91.0

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...++.+|||||||+|..+..+++..  +.+++++|+++.+++.+++++...++..+++++++|+.+. +      ...+
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~------~~~~  149 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P------CEDN  149 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S------SCTT
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccC-C------CCCC
Confidence            44577899999999999999999875  4699999999999999999999888888899999998653 1      1247


Q ss_pred             ceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           96 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        96 ~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +||+|++...   ......+++++.++|+|||.+++.+...
T Consensus       150 ~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  190 (297)
T 2o57_A          150 SYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK  190 (297)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            8999998753   2346788999999999999999976543

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.59  E-value=6.7e-15  Score=111.86  Aligned_cols=115  Identities=10%  Similarity=0.048  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh----------c------CC
Q 029803            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK----------A------GV   69 (187)
Q Consensus         6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~----------~------~~   69 (187)
                      ...+++..+....++.+|||+|||+|..+.++++.   +.+|+++|+|+.+++.|+++...          .      ..
T Consensus        55 ~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~  131 (252)
T 2gb4_A           55 LLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSS  131 (252)
T ss_dssp             HHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             HHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccC
Confidence            33444444333347789999999999999999985   56999999999999999876531          0      01


Q ss_pred             CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEe
Q 029803           70 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        70 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+++++++|+.+....      ..++||+|+....     .+....+++++.++|+|||++++.
T Consensus       132 ~~~i~~~~~D~~~l~~~------~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          132 SGSISLYCCSIFDLPRA------NIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             TSSEEEEESCTTTGGGG------CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCceEEEECccccCCcc------cCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            24699999999764221      1278999996532     233457899999999999998643

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.59  E-value=1.4e-15  Score=113.85  Aligned_cols=105  Identities=17%  Similarity=0.224  Sum_probs=85.6

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..++...+ +.+++++|+++.+++.+++++...+   +++++++|+.+..        ..++
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~--------~~~~  109 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYP-EATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYD--------FEEK  109 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCC--------CCSC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccC--------CCCC
Confidence            34678999999999999999999886 7899999999999999999876543   7999999986531        1378


Q ss_pred             eeEEEEeCCCcc-----cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           97 FDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        97 ~D~i~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ||+|++......     ...+++++.++|+|||.+++.+...
T Consensus       110 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  151 (234)
T 3dtn_A          110 YDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVH  151 (234)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECB
T ss_pred             ceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecC
Confidence            999999853222     2358999999999999999876543

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.59  E-value=5.1e-15  Score=116.84  Aligned_cols=115  Identities=15%  Similarity=0.220  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC----------CCCcEEEEE
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG----------VDHKINFIE   77 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----------~~~~~~~~~   77 (187)
                      ...+...+...++.+|||+|||+|..+..++....+..+|+++|+++.+++.|++++...+          ...++++++
T Consensus        94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            3344444567788999999999999999999875446899999999999999999998632          235799999


Q ss_pred             cchHHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           78 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        78 ~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|+.+....+     ..++||+|+++..  ....+++++.+.|+|||.+++.
T Consensus       174 ~d~~~~~~~~-----~~~~fD~V~~~~~--~~~~~l~~~~~~LkpgG~lv~~  218 (336)
T 2b25_A          174 KDISGATEDI-----KSLTFDAVALDML--NPHVTLPVFYPHLKHGGVCAVY  218 (336)
T ss_dssp             SCTTCCC------------EEEEEECSS--STTTTHHHHGGGEEEEEEEEEE
T ss_pred             CChHHccccc-----CCCCeeEEEECCC--CHHHHHHHHHHhcCCCcEEEEE
Confidence            9987643222     1357999999753  2334788999999999999874

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.59  E-value=4.3e-15  Score=114.14  Aligned_cols=105  Identities=15%  Similarity=0.146  Sum_probs=89.4

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++++|||+|||+|..++.+|+..  ..+|+++|++|.+++.+++|++.+++.++++++++|+.++.+        .+.
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g--~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~--------~~~  192 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENI  192 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSC
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhc--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc--------ccC
Confidence            4578999999999999999999863  469999999999999999999999999999999999976532        478


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ||.|+++..+ ....+++.+.++|++||+|.++...
T Consensus       193 ~D~Vi~~~p~-~~~~~l~~a~~~lk~gG~ih~~~~~  227 (278)
T 3k6r_A          193 ADRILMGYVV-RTHEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             EEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCEEEECCCC-cHHHHHHHHHHHcCCCCEEEEEeee
Confidence            9999998543 3456788889999999999876543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.59  E-value=4.3e-15  Score=110.71  Aligned_cols=113  Identities=18%  Similarity=0.258  Sum_probs=87.8

Q ss_pred             HHHHHHHH-HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC----CCcEEEEEcchHH
Q 029803            8 GQLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----DHKINFIESEALS   82 (187)
Q Consensus         8 ~~ll~~l~-~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~~~~~~~d~~~   82 (187)
                      ..++..+. ...++.+|||+|||+|..+..++....+.++|+++|+++.+++.+++++...+.    ..+++++.+|+..
T Consensus        65 ~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~  144 (226)
T 1i1n_A           65 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  144 (226)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             HHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCccc
Confidence            34444443 255778999999999999999998764457999999999999999999987664    3469999999864


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ....       .++||+|+++.....   +++.+.++|+|||++++..
T Consensus       145 ~~~~-------~~~fD~i~~~~~~~~---~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          145 GYAE-------EAPYDAIHVGAAAPV---VPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             CCGG-------GCCEEEEEECSBBSS---CCHHHHHTEEEEEEEEEEE
T ss_pred             Cccc-------CCCcCEEEECCchHH---HHHHHHHhcCCCcEEEEEE
Confidence            3211       368999999865433   3467889999999999853

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.58  E-value=8.2e-15  Score=114.28  Aligned_cols=106  Identities=15%  Similarity=0.198  Sum_probs=85.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHh---cCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK---AGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      .++++|||||||+|..+..+++..+ ..+|+++|+++.+++.+++++..   .....+++++.+|+.+.....     ..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~-~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-----~~  167 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGT-VEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT-----PD  167 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS-----CT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCC-CCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc-----cC
Confidence            5788999999999999999998644 67999999999999999998743   222357999999998865421     14


Q ss_pred             CceeEEEEeCCCcc-------cHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADKDN-------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~~-------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++||+|++|.....       ...+++.+.+.|+|||++++.
T Consensus       168 ~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  209 (304)
T 3bwc_A          168 NTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQ  209 (304)
T ss_dssp             TCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            78999999864222       157899999999999999986

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.58  E-value=1.8e-14  Score=115.95  Aligned_cols=103  Identities=18%  Similarity=0.251  Sum_probs=84.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++++|||+|||+|..++.++..   +.+|+++|+++.+++.+++|++.+++..  ++.++|+.+.++.+      .+.||
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~~~--~~~~~D~~~~l~~~------~~~fD  282 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGLRV--DIRHGEALPTLRGL------EGPFH  282 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCCC--EEEESCHHHHHHTC------CCCEE
T ss_pred             CCCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCCCC--cEEEccHHHHHHHh------cCCCC
Confidence            3889999999999999999985   4569999999999999999999988864  45699999877653      23499


Q ss_pred             EEEEeCCC------------cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           99 YAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        99 ~i~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|++|+..            ..+..+++.+.++|+|||++++....
T Consensus       283 ~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s  328 (393)
T 4dmg_A          283 HVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS  328 (393)
T ss_dssp             EEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            99999643            23467888899999999999864433

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.58  E-value=2.9e-14  Score=122.30  Aligned_cols=112  Identities=21%  Similarity=0.361  Sum_probs=93.5

Q ss_pred             HHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcc
Q 029803           13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYS   91 (187)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~   91 (187)
                      .+....++++|||+|||+|..++.++...  ..+|+++|+++.+++.+++|++.+++. .+++++++|+.+.++..    
T Consensus       533 ~l~~~~~g~~VLDlg~GtG~~sl~aa~~g--a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~----  606 (703)
T 3v97_A          533 MLGQMSKGKDFLNLFSYTGSATVHAGLGG--ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA----  606 (703)
T ss_dssp             HHHHHCTTCEEEEESCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC----
T ss_pred             HHHHhcCCCcEEEeeechhHHHHHHHHCC--CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc----
Confidence            34445688999999999999999998742  357999999999999999999999987 68999999999977653    


Q ss_pred             cCCCceeEEEEeCCC--------------cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           92 ENEGSFDYAFVDADK--------------DNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~--------------~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                        .++||+|++|+..              ..+..+++.+.++|+|||++++....
T Consensus       607 --~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          607 --NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             --CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             --CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence              4789999999642              23556788889999999999987554

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.58  E-value=7e-15  Score=111.18  Aligned_cols=105  Identities=16%  Similarity=0.219  Sum_probs=85.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc--------CCCCcEEEEEcchHHHHHHHhhc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--------GVDHKINFIESEALSVLDQLLKY   90 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------~~~~~~~~~~~d~~~~~~~~~~~   90 (187)
                      ++.+|||||||+|..+..++...+ ..+++++|+++.+++.+++++...        ++. +++++.+|+.+.++...  
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-nv~~~~~D~~~~l~~~~--  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFP-EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-NINVLRGNAMKFLPNFF--  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHST-TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-TEEEEECCTTSCGGGTS--
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCC-CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-cEEEEeccHHHHHHHhc--
Confidence            567899999999999999999876 789999999999999999998865        654 69999999976444321  


Q ss_pred             ccCCCceeEEEEeCCCcc-----------cHHHHHHHHhccCCCeEEEEe
Q 029803           91 SENEGSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~~~-----------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                        ..+.+|.|++......           ...+++.+.++|+|||++++.
T Consensus       125 --~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          125 --EKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             --CTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             --cccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence              2478999987643221           257899999999999999883

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.58  E-value=3.8e-15  Score=119.30  Aligned_cols=104  Identities=13%  Similarity=0.091  Sum_probs=86.3

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC--cEEEEEcchHHHHHHHhhcccCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH--KINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ..++.+|||+|||+|..++.+++..| +.+|+++|+++.+++.+++++..+++.+  +++++.+|+.+.+        ..
T Consensus       220 ~~~~~~VLDlGcG~G~~s~~la~~~p-~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~--------~~  290 (375)
T 4dcm_A          220 ENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV--------EP  290 (375)
T ss_dssp             CSCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC--------CT
T ss_pred             ccCCCeEEEEeCcchHHHHHHHHHCC-CCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC--------CC
Confidence            34558999999999999999999876 7899999999999999999999888653  5888999987632        24


Q ss_pred             CceeEEEEeCCC--------cccHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++||+|+++...        .....+++.+.+.|+|||.+++.
T Consensus       291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv  333 (375)
T 4dcm_A          291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIV  333 (375)
T ss_dssp             TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            689999997532        12346789999999999999884

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.58  E-value=5.9e-15  Score=111.85  Aligned_cols=112  Identities=18%  Similarity=0.162  Sum_probs=90.8

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-CCCCcEEEEEcchHHHHHHH
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~   87 (187)
                      ..+...+...++.+|||+|||+|..+..++..+.+..+++++|+++++++.++++++.. + ..++++.++|+.+.  .+
T Consensus        86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~~--~~  162 (258)
T 2pwy_A           86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEEA--EL  162 (258)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGGC--CC
T ss_pred             HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhhc--CC
Confidence            33444445667889999999999999999998544789999999999999999999887 7 45799999998764  11


Q ss_pred             hhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           88 LKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                           ..++||+|+++.  .....+++++.++|+|||.+++..
T Consensus       163 -----~~~~~D~v~~~~--~~~~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          163 -----EEAAYDGVALDL--MEPWKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             -----CTTCEEEEEEES--SCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             -----CCCCcCEEEECC--cCHHHHHHHHHHhCCCCCEEEEEe
Confidence                 236899999975  344578899999999999999853

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.58  E-value=2.3e-15  Score=111.31  Aligned_cols=108  Identities=21%  Similarity=0.229  Sum_probs=86.1

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      +++..+....++.+|||+|||+|..+..++..   ..+++++|+++.+++.+++++...+   +++++++|+.+..    
T Consensus        41 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~----  110 (216)
T 3ofk_A           41 QLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWS---HISWAATDILQFS----  110 (216)
T ss_dssp             HHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCS---SEEEEECCTTTCC----
T ss_pred             HHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCC---CeEEEEcchhhCC----
Confidence            44554555566789999999999999999886   4699999999999999999876533   6999999987642    


Q ss_pred             hcccCCCceeEEEEeCCC------cccHHHHHHHHhccCCCeEEEEeC
Q 029803           89 KYSENEGSFDYAFVDADK------DNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~------~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                          ..++||+|++....      .....+++++.++|+|||++++..
T Consensus       111 ----~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~  154 (216)
T 3ofk_A          111 ----TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGS  154 (216)
T ss_dssp             ----CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ----CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence                14789999997432      223467999999999999999854

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.58  E-value=3.8e-15  Score=111.89  Aligned_cols=108  Identities=16%  Similarity=0.172  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      ..++..+....++.+|||||||+|..+..++...   .+++++|+++.+++.+++++..     +++++++|+.+..   
T Consensus        31 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~---   99 (250)
T 2p7i_A           31 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQ---   99 (250)
T ss_dssp             HHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCC---
T ss_pred             HHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcC---
Confidence            3455555556788899999999999999998763   4899999999999999988632     6999999987651   


Q ss_pred             hhcccCCCceeEEEEeCC---CcccHHHHHHHH-hccCCCeEEEEeCC
Q 029803           88 LKYSENEGSFDYAFVDAD---KDNYCNYHERLM-KLLKVGGIAVYDNT  131 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~---~~~~~~~~~~~~-~~L~~gG~lv~~~~  131 (187)
                           ..++||+|++...   ..+...+++++. ++|+|||.+++...
T Consensus       100 -----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~  142 (250)
T 2p7i_A          100 -----LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCP  142 (250)
T ss_dssp             -----CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             -----cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence                 2578999998753   235578999999 99999999998653

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.58  E-value=2.6e-15  Score=117.28  Aligned_cols=108  Identities=13%  Similarity=0.225  Sum_probs=89.9

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..+++..  +.+|+++|+++++++.+++++...++.++++++.+|+.+. +      ...++
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~------~~~~~  185 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDT-P------FDKGA  185 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSC-C------CCTTC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcC-C------CCCCC
Confidence            4457899999999999999999874  4699999999999999999999999888899999998653 1      12479


Q ss_pred             eeEEEEeCC--CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           97 FDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        97 ~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ||+|++...  .-....+++++.++|+|||.+++.+...
T Consensus       186 fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  224 (312)
T 3vc1_A          186 VTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITGCW  224 (312)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             EeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEccc
Confidence            999998642  2246789999999999999999865443

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.58  E-value=1.1e-14  Score=107.80  Aligned_cols=104  Identities=16%  Similarity=0.160  Sum_probs=79.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..++...+ .++|+++|+++.+++.+.+..+..   .++.++.+|+.+.....    ...++|
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~----~~~~~f  127 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYS----GIVEKV  127 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTT----TTCCCE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhc----ccccce
Confidence            4677999999999999999999877 789999999999887666655543   35888888875421100    013789


Q ss_pred             eEEEEeCCCcc-cHHHHHHHHhccCCCeEEEEe
Q 029803           98 DYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        98 D~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|+++..... ...+++++.+.|||||.+++.
T Consensus       128 D~V~~~~~~~~~~~~~l~~~~r~LkpgG~l~i~  160 (210)
T 1nt2_A          128 DLIYQDIAQKNQIEILKANAEFFLKEKGEVVIM  160 (210)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEeccChhHHHHHHHHHHHHhCCCCEEEEE
Confidence            99999864333 334589999999999999986

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.57  E-value=2.5e-14  Score=107.24  Aligned_cols=106  Identities=14%  Similarity=0.128  Sum_probs=79.3

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|+.+..++....+.++|+++|+++.++....+.....   .++.++.+|+.......    ...++
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~----~~~~~  146 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYK----SVVEN  146 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTT----TTCCC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhh----ccccc
Confidence            557889999999999999999988766899999999999876554444332   36999999986421100    01368


Q ss_pred             eeEEEEeCCCcccHHHH-HHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDADKDNYCNYH-ERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~-~~~~~~L~~gG~lv~~  129 (187)
                      ||+||+|.........+ +.+.+.|||||.+++.
T Consensus       147 ~D~I~~d~a~~~~~~il~~~~~~~LkpGG~lvis  180 (232)
T 3id6_C          147 VDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLV  180 (232)
T ss_dssp             EEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEecCCChhHHHHHHHHHHHhCCCCeEEEEE
Confidence            99999997665544444 4555699999999985

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.57  E-value=9.4e-15  Score=109.68  Aligned_cols=112  Identities=20%  Similarity=0.291  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      +.....+...+...++.+|||||||+|..+..+++..+  .+|+++|+++++++.+++++...++.+ +++..+|....+
T Consensus        77 ~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~  153 (235)
T 1jg1_A           77 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKN-VHVILGDGSKGF  153 (235)
T ss_dssp             HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCS-EEEEESCGGGCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEECCcccCC
Confidence            44444555555667888999999999999999998764  799999999999999999999888765 999999973322


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.       ..+||+|+++.......   +.+.+.|+|||.+++.
T Consensus       154 ~~-------~~~fD~Ii~~~~~~~~~---~~~~~~L~pgG~lvi~  188 (235)
T 1jg1_A          154 PP-------KAPYDVIIVTAGAPKIP---EPLIEQLKIGGKLIIP  188 (235)
T ss_dssp             GG-------GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             CC-------CCCccEEEECCcHHHHH---HHHHHhcCCCcEEEEE
Confidence            21       24699999986544433   4678899999999885

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.57  E-value=2.8e-14  Score=113.81  Aligned_cols=110  Identities=15%  Similarity=0.122  Sum_probs=90.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|..+..+++..| +.+++++|+ |++++.+++++...++.++++++.+|+.+.-..+      +++|
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------p~~~  249 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNK-EVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPF------PTGF  249 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHST-TCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCC------CCCC
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCC------CCCc
Confidence            5778999999999999999999887 789999999 9999999999988888788999999986520001      2689


Q ss_pred             eEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           98 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        98 D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      |+|++...-     +....+++++.+.|+|||.+++.+..+..
T Consensus       250 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  292 (363)
T 3dp7_A          250 DAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR  292 (363)
T ss_dssp             SEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred             CEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence            999986422     23356799999999999999987766543

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.57  E-value=2.2e-15  Score=115.76  Aligned_cols=110  Identities=14%  Similarity=0.258  Sum_probs=87.4

Q ss_pred             HHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-CCCCcEEEEEcchHHHHHHHh
Q 029803           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-GVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus        10 ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      ++...+...++.+|||+|||+|..+..+++.+.++.+++++|+++++++.+++++... +. .+++++.+|+.+.+    
T Consensus       101 ~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~----  175 (275)
T 1yb2_A          101 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFI----  175 (275)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCC----
T ss_pred             HHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccC----
Confidence            3333444567789999999999999999987433789999999999999999999887 74 46999999987621    


Q ss_pred             hcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           89 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                          ..++||+|+++.  .....+++.+.+.|+|||.+++..
T Consensus       176 ----~~~~fD~Vi~~~--~~~~~~l~~~~~~LkpgG~l~i~~  211 (275)
T 1yb2_A          176 ----SDQMYDAVIADI--PDPWNHVQKIASMMKPGSVATFYL  211 (275)
T ss_dssp             ----CSCCEEEEEECC--SCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             ----cCCCccEEEEcC--cCHHHHHHHHHHHcCCCCEEEEEe
Confidence                246899999964  345678999999999999999864

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.57  E-value=2.3e-14  Score=110.38  Aligned_cols=105  Identities=13%  Similarity=0.189  Sum_probs=86.8

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +...++.+|||+|||+|..+..++..   +.+|+++|+++.+++.+++++...++  +++++++|+.+..        ..
T Consensus       116 ~~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--------~~  182 (286)
T 3m70_A          116 AKIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAAN--------IQ  182 (286)
T ss_dssp             HHHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCC--------CC
T ss_pred             hhccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEecccccc--------cc
Confidence            34458899999999999999999986   56999999999999999999998876  6999999987631        14


Q ss_pred             CceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           95 GSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        95 ~~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ++||+|++...     .+....+++++.++|+|||++++....
T Consensus       183 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  225 (286)
T 3m70_A          183 ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAM  225 (286)
T ss_dssp             SCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred             CCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            78999999752     344568999999999999997764333

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.57  E-value=8.6e-15  Score=112.43  Aligned_cols=117  Identities=16%  Similarity=0.171  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-C-CCCcEEEEEcchHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-G-VDHKINFIESEALS   82 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~-~~~~~~~~~~d~~~   82 (187)
                      +.....+...+...++.+|||+|||+|..+..++..+.+..+++++|+++++++.++++++.. + +..+++++++|+.+
T Consensus        85 ~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~  164 (280)
T 1i9g_A           85 PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD  164 (280)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHh
Confidence            333444444455667889999999999999999986544789999999999999999999887 4 44579999999876


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..  +     ..++||+|+++..  ....+++++.++|+|||.+++..
T Consensus       165 ~~--~-----~~~~~D~v~~~~~--~~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          165 SE--L-----PDGSVDRAVLDML--APWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             CC--C-----CTTCEEEEEEESS--CGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             cC--C-----CCCceeEEEECCc--CHHHHHHHHHHhCCCCCEEEEEe
Confidence            41  1     2468999999753  44578899999999999999853

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.57  E-value=1.3e-14  Score=109.36  Aligned_cols=114  Identities=23%  Similarity=0.299  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      +.....+...+...++.+|||+|||+|..+..+++.   ..+++++|+++++++.+++++...++..++++..+|+.+..
T Consensus        77 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  153 (248)
T 2yvl_A           77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE  153 (248)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC
T ss_pred             chhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc
Confidence            334444555555667889999999999999999987   57999999999999999999998888678999999987632


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .       ..++||+|+++..  ....+++++.++|+|||.+++..
T Consensus       154 ~-------~~~~~D~v~~~~~--~~~~~l~~~~~~L~~gG~l~~~~  190 (248)
T 2yvl_A          154 V-------PEGIFHAAFVDVR--EPWHYLEKVHKSLMEGAPVGFLL  190 (248)
T ss_dssp             C-------CTTCBSEEEECSS--CGGGGHHHHHHHBCTTCEEEEEE
T ss_pred             c-------CCCcccEEEECCc--CHHHHHHHHHHHcCCCCEEEEEe
Confidence            0       1368999999643  44577899999999999999853

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.56  E-value=3.4e-14  Score=109.68  Aligned_cols=118  Identities=14%  Similarity=0.157  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC---CcEEEEEcchHH
Q 029803            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALS   82 (187)
Q Consensus         6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~   82 (187)
                      ...+++..++...++.+|||||||+|..+..++..   +.+|+++|+++.+++.++++....+..   .++.+..+|+.+
T Consensus        44 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~  120 (293)
T 3thr_A           44 EYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  120 (293)
T ss_dssp             HHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             HHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhh
Confidence            34466666677778899999999999999999986   459999999999999999887543322   357889999877


Q ss_pred             HHHHHhhcccCCCceeEEEEeC----CCcc-------cHHHHHHHHhccCCCeEEEEeC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDA----DKDN-------YCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~----~~~~-------~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ....+.    ..++||+|++.+    ....       ...+++++.++|+|||++++..
T Consensus       121 ~~~~~~----~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  175 (293)
T 3thr_A          121 LDKDVP----AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  175 (293)
T ss_dssp             HHHHSC----CTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Cccccc----cCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            542221    247999999862    1223       6778999999999999999854

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.56  E-value=4.3e-14  Score=102.81  Aligned_cols=107  Identities=15%  Similarity=0.159  Sum_probs=87.3

Q ss_pred             HHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .++...++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...++. +++++.+|+.+..        
T Consensus        26 ~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~--------   93 (199)
T 2xvm_A           26 EAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLD-NLHTRVVDLNNLT--------   93 (199)
T ss_dssp             HHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECCGGGCC--------
T ss_pred             HHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCC-CcEEEEcchhhCC--------
Confidence            3445567889999999999999999986   569999999999999999999887764 4999999987531        


Q ss_pred             CCCceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           93 NEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        93 ~~~~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..++||+|++...     ......+++.+.++|+|||.+++.+.
T Consensus        94 ~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (199)
T 2xvm_A           94 FDRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAA  137 (199)
T ss_dssp             CCCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEe
Confidence            1478999998753     23567789999999999999776443

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.56  E-value=2.1e-14  Score=114.16  Aligned_cols=119  Identities=16%  Similarity=0.163  Sum_probs=96.3

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      ..+..+..+..++...++.+|||+|||+|..++.++....+..+++++|+++.+++.|++|++.+++. ++++.++|+.+
T Consensus       187 l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~~  265 (354)
T 3tma_A          187 LTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADARH  265 (354)
T ss_dssp             CCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGGG
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChhh
Confidence            34555666666666677889999999999999999987623689999999999999999999999987 79999999987


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCCc-----------ccHHHHHHHHhccCCCeEEEEe
Q 029803           83 VLDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ....       .++||+|+++....           .+..+++.+.++|+|||.+++.
T Consensus       266 ~~~~-------~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  316 (354)
T 3tma_A          266 LPRF-------FPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALL  316 (354)
T ss_dssp             GGGT-------CCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEE
T ss_pred             Cccc-------cCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            5321       35789999985321           1366788889999999999884

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.56  E-value=8.2e-15  Score=109.30  Aligned_cols=106  Identities=17%  Similarity=0.195  Sum_probs=83.8

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.++++++..   .+++++++|+.+... +.   ...++
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~-~~---~~~~~  143 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEE-YR---ALVPK  143 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGG-GT---TTCCC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcch-hh---cccCC
Confidence            346789999999999999999987644689999999999999999887654   479999999875311 00   01358


Q ss_pred             eeEEEEeCCCcccH-HHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDADKDNYC-NYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~~~~~~-~~~~~~~~~L~~gG~lv~~  129 (187)
                      ||+|+++....... .+++++.+.|+|||.+++.
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            99999987544433 4489999999999999986

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.56  E-value=6.5e-14  Score=112.22  Aligned_cols=113  Identities=12%  Similarity=0.051  Sum_probs=88.2

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHH-------HhcCCC-CcEEEEEcchHHHH-HH
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII-------KKAGVD-HKINFIESEALSVL-DQ   86 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-------~~~~~~-~~~~~~~~d~~~~~-~~   86 (187)
                      ...++.+|||||||+|..++.+|...+ ..++++||+++.+++.|++++       +.+++. .+++++++|+.+.- ..
T Consensus       170 ~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d  248 (438)
T 3uwp_A          170 KMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE  248 (438)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc
Confidence            456788999999999999999998765 457999999999999998764       345553 67999999997642 11


Q ss_pred             HhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           87 LLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      .      -..||+||+...  .+.....+.++++.|||||.|++.+.+...
T Consensus       249 ~------~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~  293 (438)
T 3uwp_A          249 R------IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPL  293 (438)
T ss_dssp             H------HHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred             c------cCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecccCC
Confidence            1      147999998643  345566778889999999999998877644

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.56  E-value=6.1e-15  Score=110.96  Aligned_cols=116  Identities=13%  Similarity=0.191  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHc----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            7 HGQLMAMLLRLV----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         7 ~~~ll~~l~~~~----~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      ...++..++...    ++.+|||||||+|..+..++...  ..+++++|+++.+++.+++++...+ ..+++++.+|+.+
T Consensus        63 ~~~~~~~l~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~  139 (241)
T 2ex4_A           63 SRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQD  139 (241)
T ss_dssp             HHHHHHGGGC----CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGG
T ss_pred             HHHHHHHHHHhcccCCCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhh
Confidence            345555554432    57899999999999999888764  4699999999999999999987654 3468999999765


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCCc-----ccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ..       ...++||+|++.....     ....+++++.++|+|||++++.+..
T Consensus       140 ~~-------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  187 (241)
T 2ex4_A          140 FT-------PEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNM  187 (241)
T ss_dssp             CC-------CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cC-------CCCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            31       1245899999985322     2447899999999999999986543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.55  E-value=9.2e-14  Score=111.26  Aligned_cols=106  Identities=17%  Similarity=0.205  Sum_probs=90.2

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc---------------CCCCcEEEEEcch
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---------------GVDHKINFIESEA   80 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---------------~~~~~~~~~~~d~   80 (187)
                      ...++.+|||+|||+|..++.+++..+ ..+|+++|+++++++.+++|++.+               ++.+ ++++++|+
T Consensus        44 ~~~~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~-i~v~~~Da  121 (378)
T 2dul_A           44 NILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKT-IVINHDDA  121 (378)
T ss_dssp             HHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSE-EEEEESCH
T ss_pred             HHcCCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCc-eEEEcCcH
Confidence            334789999999999999999999875 578999999999999999999988               7654 99999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .+.+...      .++||+|++|+ +.....+++.+++.|++||++++..
T Consensus       122 ~~~~~~~------~~~fD~I~lDP-~~~~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          122 NRLMAER------HRYFHFIDLDP-FGSPMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             HHHHHHS------TTCEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHhc------cCCCCEEEeCC-CCCHHHHHHHHHHhcCCCCEEEEEe
Confidence            8876653      35899999986 3344788999999999999888753

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.55  E-value=2.1e-14  Score=115.20  Aligned_cols=114  Identities=13%  Similarity=0.128  Sum_probs=92.3

Q ss_pred             cHHHHHHHHHHHHHc-----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc
Q 029803            4 LTIHGQLMAMLLRLV-----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   78 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~-----~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~   78 (187)
                      .+....++..+....     ++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++..+++.  ++++++
T Consensus       213 d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~  287 (381)
T 3dmg_A          213 DPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK--AQALHS  287 (381)
T ss_dssp             CHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEEC
T ss_pred             CHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEc
Confidence            345566777776543     6789999999999999999986   569999999999999999999988764  889999


Q ss_pred             chHHHHHHHhhcccCCCceeEEEEeCC--------CcccHHHHHHHHhccCCCeEEEEe
Q 029803           79 EALSVLDQLLKYSENEGSFDYAFVDAD--------KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        79 d~~~~~~~~~~~~~~~~~~D~i~~d~~--------~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+.+...       ..++||+|+++..        ......+++++.+.|+|||.+++.
T Consensus       288 D~~~~~~-------~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv  339 (381)
T 3dmg_A          288 DVDEALT-------EEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLV  339 (381)
T ss_dssp             STTTTSC-------TTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             chhhccc-------cCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEE
Confidence            9876422       1379999999842        233467899999999999999884

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.55  E-value=6.7e-15  Score=110.18  Aligned_cols=105  Identities=16%  Similarity=0.093  Sum_probs=83.1

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..++...+ .++|+++|+++++++.++++....   .+++++.+|+.+....+    ...++
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~----~~~~~  143 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYA----NIVEK  143 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGT----TTSCC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCccccc----ccCcc
Confidence            34678999999999999999999876 689999999999999999886543   57999999986521101    01268


Q ss_pred             eeEEEEeCC-CcccHHHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDAD-KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~-~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ||+|+.+.. +.....+++++.+.|+|||.+++.
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            999997743 223466799999999999999985

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.55  E-value=1e-13  Score=104.70  Aligned_cols=109  Identities=17%  Similarity=0.310  Sum_probs=86.5

Q ss_pred             HHHHHHHHHH---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            8 GQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         8 ~~ll~~l~~~---~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      ..++..++..   .++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...+.  +++++++|+.+..
T Consensus        27 ~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~  101 (252)
T 1wzn_A           27 IDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA  101 (252)
T ss_dssp             HHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC
T ss_pred             HHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcc
Confidence            3455555553   35689999999999999999885   56999999999999999999987664  5899999987631


Q ss_pred             HHHhhcccCCCceeEEEEeCC------CcccHHHHHHHHhccCCCeEEEEe
Q 029803           85 DQLLKYSENEGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                              ..++||+|++...      ......+++.+.++|+|||+++++
T Consensus       102 --------~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~  144 (252)
T 1wzn_A          102 --------FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD  144 (252)
T ss_dssp             --------CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --------cCCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence                    1368999997532      123567889999999999999975

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.54  E-value=3.2e-14  Score=104.04  Aligned_cols=111  Identities=14%  Similarity=0.131  Sum_probs=86.9

Q ss_pred             HHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029803           11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY   90 (187)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   90 (187)
                      +..++...++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...+.  +++++++|+.+. + +   
T Consensus        21 l~~~~~~~~~~~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~-~-~---   90 (202)
T 2kw5_A           21 LVSVANQIPQGKILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADF-D-I---   90 (202)
T ss_dssp             HHHHHHHSCSSEEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTB-S-C---
T ss_pred             HHHHHHhCCCCCEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhc-C-C---
Confidence            444444334449999999999999999875   56999999999999999999987765  689999998653 1 1   


Q ss_pred             ccCCCceeEEEEeCCC---cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           91 SENEGSFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                        ..++||+|++....   .....+++++.++|+|||.+++.....
T Consensus        91 --~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  134 (202)
T 2kw5_A           91 --VADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAP  134 (202)
T ss_dssp             --CTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECT
T ss_pred             --CcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence              24689999986432   245678999999999999999976543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.54  E-value=1.4e-13  Score=100.74  Aligned_cols=109  Identities=12%  Similarity=-0.000  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      ...++..+.... +.+|||+|||+|..+..++..   +.+++++|+++.+++.++++.      .+++++++|+.+. + 
T Consensus        30 ~~~~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-   97 (203)
T 3h2b_A           30 DRVLIEPWATGV-DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDL-S-   97 (203)
T ss_dssp             THHHHHHHHHHC-CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGG-G-
T ss_pred             HHHHHHHHhccC-CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCccccc-c-
Confidence            345666666554 889999999999999999886   569999999999999999873      3589999998763 2 


Q ss_pred             HhhcccCCCceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           87 LLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +     ..++||+|++...     ......+++++.++|+|||.+++....
T Consensus        98 ~-----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  143 (203)
T 3h2b_A           98 D-----SPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFS  143 (203)
T ss_dssp             G-----SCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred             c-----CCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEcc
Confidence            1     2579999998752     235678999999999999999986544

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.54  E-value=5.1e-15  Score=110.55  Aligned_cols=113  Identities=16%  Similarity=0.210  Sum_probs=86.3

Q ss_pred             HHHHHHHHH-HHcCCCEEEEEcccccHHHHHHHhhCCC-----CCEEEEEeCCcchHHHHHHHHHhcCC----CCcEEEE
Q 029803            7 HGQLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIPE-----DGQITAIDVNRETYEIGLPIIKKAGV----DHKINFI   76 (187)
Q Consensus         7 ~~~ll~~l~-~~~~~~~vLeiG~g~G~~~~~la~~~~~-----~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~~~~~   76 (187)
                      .+.++..+. ...++.+|||||||+|+.+..++...+.     .++|+++|+++++++.+++++...+.    ..+++++
T Consensus        71 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  150 (227)
T 1r18_A           71 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV  150 (227)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEE
Confidence            344444443 3556789999999999999999986531     26999999999999999999887551    2369999


Q ss_pred             EcchHHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           77 ESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        77 ~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+|..+.++.       .++||+|+++......   .+.+.+.|+|||.+++.
T Consensus       151 ~~d~~~~~~~-------~~~fD~I~~~~~~~~~---~~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          151 EGDGRKGYPP-------NAPYNAIHVGAAAPDT---PTELINQLASGGRLIVP  193 (227)
T ss_dssp             ESCGGGCCGG-------GCSEEEEEECSCBSSC---CHHHHHTEEEEEEEEEE
T ss_pred             ECCcccCCCc-------CCCccEEEECCchHHH---HHHHHHHhcCCCEEEEE
Confidence            9998763221       2689999998754443   36778999999999985

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.54  E-value=4.6e-14  Score=107.96  Aligned_cols=112  Identities=13%  Similarity=0.098  Sum_probs=85.9

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcc------hHHHHHHHHHhcCCCCcEEEEEcc-hHHHHHHHhh
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRE------TYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLK   89 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~------~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~   89 (187)
                      ..++.+|||||||+|..+..++...++..+++++|+++.      +++.+++++...++..++++..+| .......+  
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~--  118 (275)
T 3bkx_A           41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPI--  118 (275)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGG--
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCC--
Confidence            457789999999999999999988643689999999997      999999999988877789999998 32110011  


Q ss_pred             cccCCCceeEEEEeCCC---cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           90 YSENEGSFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                         ..++||+|++....   .....+++.+..+++|||.+++.+...
T Consensus       119 ---~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~  162 (275)
T 3bkx_A          119 ---ADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSM  162 (275)
T ss_dssp             ---TTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECS
T ss_pred             ---CCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence               24789999987532   233456666667777899999976554

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.54  E-value=2.4e-14  Score=106.92  Aligned_cols=110  Identities=23%  Similarity=0.309  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      +.....+...+...++.+|||||||+|..+..++...   .+++++|+++++++.+++++...+   +++++.+|+.+.+
T Consensus        56 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~~  129 (231)
T 1vbf_A           56 LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLGY  129 (231)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCccccc
Confidence            3344444444556678899999999999999999874   699999999999999999987655   6999999987632


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +.       .++||+|+++.......   +.+.++|+|||.+++..
T Consensus       130 ~~-------~~~fD~v~~~~~~~~~~---~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          130 EE-------EKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             GG-------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEEE
T ss_pred             cc-------CCCccEEEECCcHHHHH---HHHHHHcCCCcEEEEEE
Confidence            21       36899999986544432   46789999999998863

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.53  E-value=2.1e-14  Score=107.90  Aligned_cols=99  Identities=15%  Similarity=0.188  Sum_probs=80.9

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..++..   +.+++++|+++++++.++++         ++++.+|+.+.+..+     ..++
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~-----~~~~  101 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSL-----PDKY  101 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTS-----CTTC
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhc-----CCCC
Confidence            346689999999999999999886   56899999999999988865         778899988865443     3579


Q ss_pred             eeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           97 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ||+|++....     +....+++++.++|+|||++++....
T Consensus       102 fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  142 (240)
T 3dli_A          102 LDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPN  142 (240)
T ss_dssp             BSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEEC
T ss_pred             eeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            9999987532     24578999999999999999986543

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.53  E-value=1.4e-14  Score=116.41  Aligned_cols=116  Identities=14%  Similarity=0.261  Sum_probs=90.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-----C-CC-CcEEEEEcchHHHHHHHhh
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-----G-VD-HKINFIESEALSVLDQLLK   89 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-----~-~~-~~~~~~~~d~~~~~~~~~~   89 (187)
                      ..++.+|||+|||+|..+..++...+++.+|+++|+++.+++.++++++..     + .. .+++++++|+.+.... ..
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~-~~  159 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATA-EP  159 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGC-BS
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhc-cc
Confidence            457789999999999999999998754789999999999999999998754     3 22 5799999998753110 00


Q ss_pred             cccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           90 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .....++||+|++...   ..+...+++++.++|+|||++++.+...
T Consensus       160 ~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~  206 (383)
T 4fsd_A          160 EGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYA  206 (383)
T ss_dssp             CCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence            0012578999998853   3456789999999999999999976543

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.53  E-value=3.7e-14  Score=112.57  Aligned_cols=104  Identities=18%  Similarity=0.243  Sum_probs=86.9

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...++++|||+|||+|..+..+++. + ..+|+++|++ ++++.|+++++..++.++++++++|+.+.  .+     ..+
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~-g-~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~--~~-----~~~  132 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEV--EL-----PVE  132 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHT-T-CSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTC--CC-----SSS
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHC-C-CCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHc--cC-----CCC
Confidence            4678899999999999999999986 3 5699999999 59999999999999988899999999764  11     247


Q ss_pred             ceeEEEEeC------CCcccHHHHHHHHhccCCCeEEEEe
Q 029803           96 SFDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d~------~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +||+|+++.      .......+++.+.++|+|||+++.+
T Consensus       133 ~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~~  172 (349)
T 3q7e_A          133 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFPD  172 (349)
T ss_dssp             CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             ceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEccc
Confidence            999999863      2345567888889999999999854

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.53  E-value=5.6e-14  Score=112.58  Aligned_cols=106  Identities=13%  Similarity=0.176  Sum_probs=87.5

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...++++|||+|||+|..+..+++..  ..+|+++|++ .+++.++++++.+++.++++++++|+.+..        ..+
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~g--~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~  128 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQAG--ARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS--------LPE  128 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHTT--CSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC--------CSS
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhcC--CCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC--------cCC
Confidence            35678899999999999999999862  3599999999 999999999999999888999999997641        137


Q ss_pred             ceeEEEEeCC------CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           96 SFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        96 ~~D~i~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +||+|+++.-      ......+++.+.++|+|||+++++...
T Consensus       129 ~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          129 KVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             CEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             cceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            8999998641      133566888888999999999876543

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.53  E-value=3.7e-14  Score=106.38  Aligned_cols=110  Identities=15%  Similarity=0.134  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            7 HGQLMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         7 ~~~ll~~l~~~~--~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      ..+.+..++...  ++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...+.  +++++++|+.+..
T Consensus        23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~   97 (246)
T 1y8c_A           23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN   97 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCC
Confidence            334455555443  6789999999999999999886   46999999999999999999887665  5899999986531


Q ss_pred             HHHhhcccCCCceeEEEEeC-CC------cccHHHHHHHHhccCCCeEEEEe
Q 029803           85 DQLLKYSENEGSFDYAFVDA-DK------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~-~~------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                              ..++||+|++.. ..      .....+++++.++|+|||+++++
T Consensus        98 --------~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A           98 --------INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             --------CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             --------ccCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEE
Confidence                    136899999975 21      34567899999999999999984

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.53  E-value=3.1e-14  Score=106.64  Aligned_cols=104  Identities=16%  Similarity=0.150  Sum_probs=82.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH--HHHhhcccCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL--DQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~   94 (187)
                      ..++.+|||+|||+|..+..+++...+.++|+++|+++.+++.+.++.+..   .+++++++|+.+..  +.      ..
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~------~~  145 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRM------LI  145 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGG------GC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcc------cC
Confidence            446789999999999999999998644689999999999888888777654   46999999987631  21      14


Q ss_pred             CceeEEEEeCCCcc-cHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADKDN-YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~~-~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++||+|+++..... ...+++++.+.|+|||.+++.
T Consensus       146 ~~~D~V~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~  181 (233)
T 2ipx_A          146 AMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVIS  181 (233)
T ss_dssp             CCEEEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcEEEEEEcCCCccHHHHHHHHHHHHcCCCeEEEEE
Confidence            68999999865322 245688899999999999984

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.53  E-value=1.5e-13  Score=101.74  Aligned_cols=109  Identities=19%  Similarity=0.213  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      ..++..+. ..++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++.     .+++++++|+.+. +  
T Consensus        35 ~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~-~--  102 (220)
T 3hnr_A           35 EDILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSF-E--  102 (220)
T ss_dssp             HHHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSC-C--
T ss_pred             HHHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhc-C--
Confidence            34555543 447889999999999999999986   5799999999999999998864     4688999998653 1  


Q ss_pred             hhcccCCCceeEEEEeCCCc---cc--HHHHHHHHhccCCCeEEEEeCCCC
Q 029803           88 LKYSENEGSFDYAFVDADKD---NY--CNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~~---~~--~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                           ..++||+|++.....   ..  ..+++++.++|+|||.+++.+..+
T Consensus       103 -----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  148 (220)
T 3hnr_A          103 -----VPTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF  148 (220)
T ss_dssp             -----CCSCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred             -----CCCCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence                 127899999985332   22  238899999999999999976443

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.52  E-value=1.9e-14  Score=109.66  Aligned_cols=105  Identities=14%  Similarity=0.132  Sum_probs=81.5

Q ss_pred             HHHHHHHHHc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            9 QLMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         9 ~ll~~l~~~~-~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      +++..+.... ...+|||||||+|..+..++..   ..+|+++|+++.+++.|++       ..++++.++++.+. +  
T Consensus        28 ~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~-~--   94 (257)
T 4hg2_A           28 ALFRWLGEVAPARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDT-G--   94 (257)
T ss_dssp             HHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC-------CTTEEEEECCTTCC-C--
T ss_pred             HHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh-------cCCceeehhhhhhh-c--
Confidence            4555555544 3468999999999999999876   4699999999999987753       24699999998653 1  


Q ss_pred             hhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeEEEEeC
Q 029803           88 LKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                          ..+++||+|++...  .-+...+++++.++|||||++++-.
T Consensus        95 ----~~~~sfD~v~~~~~~h~~~~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A           95 ----LPPASVDVAIAAQAMHWFDLDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             ----CCSSCEEEEEECSCCTTCCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----ccCCcccEEEEeeehhHhhHHHHHHHHHHHcCCCCEEEEEE
Confidence                23579999998642  3346778999999999999998743

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.52  E-value=5.3e-14  Score=112.86  Aligned_cols=106  Identities=19%  Similarity=0.116  Sum_probs=90.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCc-EEEEEcchHHHHH-HHhhcccCCC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK-INFIESEALSVLD-QLLKYSENEG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~-~~~~~~d~~~~~~-~~~~~~~~~~   95 (187)
                      .++.+|||++||+|..++.+++..+...+|+++|+++++++.+++|++.+++.++ ++++++|+.+.+. .+      .+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~------~~  124 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW------GF  124 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC------SS
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh------CC
Confidence            3568999999999999999998754126899999999999999999999999877 9999999998876 53      36


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +||+|++|+ ......+++.+.++|++||+|++.-
T Consensus       125 ~fD~V~lDP-~g~~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          125 GFDYVDLDP-FGTPVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             CEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcEEEECC-CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence            899999997 3344678999999999999888754

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.52  E-value=5.1e-14  Score=111.39  Aligned_cols=104  Identities=16%  Similarity=0.172  Sum_probs=84.8

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ....++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|+++++.+++.++++++++|+.+.  .+     ..
T Consensus        60 ~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~--~~-----~~  129 (340)
T 2fyt_A           60 PHIFKDKVVLDVGCGTGILSMFAAKA-G-AKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEV--HL-----PV  129 (340)
T ss_dssp             GGGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTS--CC-----SC
T ss_pred             hhhcCCCEEEEeeccCcHHHHHHHHc-C-CCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHh--cC-----CC
Confidence            34567889999999999999999886 3 46999999996 9999999999998877899999998763  11     23


Q ss_pred             CceeEEEEeC------CCcccHHHHHHHHhccCCCeEEEE
Q 029803           95 GSFDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        95 ~~~D~i~~d~------~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ++||+|++..      .......+++.+.++|+|||.++.
T Consensus       130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~lip  169 (340)
T 2fyt_A          130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  169 (340)
T ss_dssp             SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEEc
Confidence            6899999864      123345688888999999999983

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.52  E-value=4.6e-15  Score=113.36  Aligned_cols=97  Identities=9%  Similarity=0.045  Sum_probs=80.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc--CC-CCcEEEEEcchHHHHHHHhhcccCC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GV-DHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      .++++|||||||+|..+..+++. +  .+++++|+++++++.|++++...  ++ .++++++.+|+.+.+          
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~--~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D--THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S--CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C--CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence            46789999999999999999887 4  79999999999999999876431  12 357999999987532          


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++||+|++|...  ...+++.+.+.|+|||++++.
T Consensus       138 ~~fD~Ii~d~~d--p~~~~~~~~~~L~pgG~lv~~  170 (262)
T 2cmg_A          138 KKYDLIFCLQEP--DIHRIDGLKRMLKEDGVFISV  170 (262)
T ss_dssp             CCEEEEEESSCC--CHHHHHHHHTTEEEEEEEEEE
T ss_pred             hhCCEEEECCCC--hHHHHHHHHHhcCCCcEEEEE
Confidence            579999999643  345899999999999999985

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.52  E-value=2.9e-14  Score=104.67  Aligned_cols=117  Identities=10%  Similarity=0.107  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      ....+++..+....++.+|||+|||+|..+..++...  +.+++++|+++++++.+++++...+  .+++++++|+.+. 
T Consensus         9 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~-   83 (209)
T 2p8j_A            9 PQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKL-   83 (209)
T ss_dssp             THHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSC-
T ss_pred             hhHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhC-
Confidence            3455677777777788999999999998755444432  5799999999999999999988765  3588899998652 


Q ss_pred             HHHhhcccCCCceeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           85 DQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +      ...++||+|++....     .....+++++.++|+|||++++....
T Consensus        84 ~------~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A           84 P------FKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             C------SCTTCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             C------CCCCceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            1      124689999986422     34567889999999999999987644

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.52  E-value=3.3e-13  Score=107.76  Aligned_cols=107  Identities=12%  Similarity=0.140  Sum_probs=89.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++..| +.+++++|+ +.+++.+++++...++.+++++..+|..+.   +      ..+|
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~---~------p~~~  269 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFP-GLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET---I------PDGA  269 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTC---C------CSSC
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCC-CCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCC---C------CCCc
Confidence            4678999999999999999999987 789999999 999999999999988888999999998731   1      2389


Q ss_pred             eEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           98 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        98 D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      |+|++....     .....+++++.+.|+|||.+++.+.....
T Consensus       270 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~  312 (369)
T 3gwz_A          270 DVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE  312 (369)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred             eEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            999987532     22336899999999999999997766543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.52  E-value=1.2e-13  Score=102.21  Aligned_cols=105  Identities=11%  Similarity=0.107  Sum_probs=82.9

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +...++.+|||+|||+|..+..++..   +.+++++|+++.+++.++++       .++++..++..+......   ...
T Consensus        48 ~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~---~~~  114 (227)
T 3e8s_A           48 ILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKV---PVG  114 (227)
T ss_dssp             HHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCS---CCC
T ss_pred             hhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhccccc---ccC
Confidence            34557799999999999999999886   56999999999999999877       347788888876522110   123


Q ss_pred             CceeEEEEeCC--CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           95 GSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        95 ~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .+||+|++...  ......+++++.++|+|||++++.+..
T Consensus       115 ~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~~~  154 (227)
T 3e8s_A          115 KDYDLICANFALLHQDIIELLSAMRTLLVPGGALVIQTLH  154 (227)
T ss_dssp             CCEEEEEEESCCCSSCCHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCccEEEECchhhhhhHHHHHHHHHHHhCCCeEEEEEecC
Confidence            56999998743  456778999999999999999997653

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.52  E-value=3.5e-14  Score=104.74  Aligned_cols=109  Identities=15%  Similarity=0.170  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      ..++..+....++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++    .+. .+++++++|+.+..   
T Consensus        35 ~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~~---  103 (218)
T 3ou2_A           35 PAALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDWT---  103 (218)
T ss_dssp             HHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSCC---
T ss_pred             HHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccCC---
Confidence            345555555667789999999999999999987   5699999999999999987    343 46999999987641   


Q ss_pred             hhcccCCCceeEEEEeCCCcc-----cHHHHHHHHhccCCCeEEEEeCCC
Q 029803           88 LKYSENEGSFDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                           ..++||+|++......     ...+++++.++|+|||.+++.+..
T Consensus       104 -----~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  148 (218)
T 3ou2_A          104 -----PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVT  148 (218)
T ss_dssp             -----CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -----CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence                 2579999998753222     367899999999999999987553

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.52  E-value=5.3e-14  Score=104.48  Aligned_cols=111  Identities=15%  Similarity=0.220  Sum_probs=86.5

Q ss_pred             HHHHHHH-HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803           10 LMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus        10 ll~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      ++..+.. ..++.+|||+|||+|..+..++...+   +++++|+++++++.+++++...+  .+++++++|+.+. + + 
T Consensus        28 ~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~-~-~-   99 (227)
T 1ve3_A           28 LEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKL-S-F-   99 (227)
T ss_dssp             HHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSC-C-S-
T ss_pred             HHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcC-C-C-
Confidence            3444443 23578999999999999999988643   99999999999999999988766  4699999998652 1 1 


Q ss_pred             hcccCCCceeEEEEeCC--C---cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           89 KYSENEGSFDYAFVDAD--K---DNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~--~---~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                          ..++||+|++...  .   .....+++++.++|+|||.+++.+..
T Consensus       100 ----~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          100 ----EDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             ----CTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ----CCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence                2468999998754  2   23457889999999999999886543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.52  E-value=1.2e-13  Score=108.83  Aligned_cols=109  Identities=16%  Similarity=0.168  Sum_probs=87.4

Q ss_pred             HHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   89 (187)
Q Consensus        10 ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   89 (187)
                      .+.......++++|||||||+|..+..+++. + ..+|+++|++ ++++.|+++++.+++.++++++++|+.+..  +  
T Consensus        29 ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~--~--  101 (328)
T 1g6q_1           29 AIIQNKDLFKDKIVLDVGCGTGILSMFAAKH-G-AKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH--L--  101 (328)
T ss_dssp             HHHHHHHHHTTCEEEEETCTTSHHHHHHHHT-C-CSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC--C--
T ss_pred             HHHhhHhhcCCCEEEEecCccHHHHHHHHHC-C-CCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc--C--
Confidence            3434455678899999999999999998885 2 4699999999 599999999999998888999999987631  1  


Q ss_pred             cccCCCceeEEEEeC------CCcccHHHHHHHHhccCCCeEEEE
Q 029803           90 YSENEGSFDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~------~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                         ..++||+|+++.      .......++..+.++|+|||+++.
T Consensus       102 ---~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          102 ---PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             ---SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ---CCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEEE
Confidence               136899999873      123356778888899999999984

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.52  E-value=1.8e-13  Score=107.77  Aligned_cols=106  Identities=12%  Similarity=0.066  Sum_probs=89.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++.+|||||||+|..+..+++.+| +.+++++|+ +++++.+++++...++.+++++..+|..+.   +      ..+||
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------p~~~D  237 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHE-DLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP---L------PAGAG  237 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC---C------CCSCS
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCC-CCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC---C------CCCCc
Confidence            467999999999999999999887 789999999 999999999999988888999999998631   1      23899


Q ss_pred             EEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           99 YAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        99 ~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      +|++...-     +.....++++.+.|+|||.+++.+.....
T Consensus       238 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  279 (332)
T 3i53_A          238 GYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD  279 (332)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred             EEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence            99986422     22467899999999999999998776544

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.51  E-value=5.4e-13  Score=104.86  Aligned_cols=107  Identities=16%  Similarity=0.212  Sum_probs=88.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++..+ +.+++++|++ .+++.+++++...++.++++++.+|..+.  .+      ...|
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~------~~~~  233 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNP-NAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEV--DY------GNDY  233 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCT-TCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTS--CC------CSCE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccC--CC------CCCC
Confidence            5678999999999999999999886 7899999999 99999999999888887899999998653  11      2459


Q ss_pred             eEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803           98 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWG  134 (187)
Q Consensus        98 D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      |+|++....     +....+++++.+.|+|||.+++.+....
T Consensus       234 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  275 (335)
T 2r3s_A          234 DLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPN  275 (335)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred             cEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence            999986432     3346789999999999998888766543

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.51  E-value=9.1e-14  Score=110.16  Aligned_cols=110  Identities=15%  Similarity=0.125  Sum_probs=91.1

Q ss_pred             cC-CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VN-AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~-~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .+ +.+|||||||+|..+..+++.+| +.+++++|+ +++++.+++++...++.++++++.+|..+.....      .++
T Consensus       177 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------~~~  248 (352)
T 3mcz_A          177 FARARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFE------GGA  248 (352)
T ss_dssp             GTTCCEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGT------TCC
T ss_pred             cCCCCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccC------CCC
Confidence            45 78999999999999999999987 789999999 8999999999998888888999999987642111      357


Q ss_pred             eeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           97 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        97 ~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      ||+|++....     +....+++++.+.|+|||.+++.+.....
T Consensus       249 ~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  292 (352)
T 3mcz_A          249 ADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMND  292 (352)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCT
T ss_pred             ccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            9999987532     23467899999999999999987766543

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.51  E-value=1.1e-13  Score=109.23  Aligned_cols=100  Identities=19%  Similarity=0.153  Sum_probs=86.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..++. ++  . ..+|+++|+++.+++.+++|++.+++.++++++++|+.+.+          ++|
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~-~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----------~~f  259 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--N-AKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----------VKG  259 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--T-SSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----------CCE
T ss_pred             CCCCEEEEccCccCHHHHh-cc--C-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----------CCC
Confidence            5788999999999999999 77  3 67999999999999999999999998778999999997642          589


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |+|++|... ....+++.+.++|+|||++++....
T Consensus       260 D~Vi~dpP~-~~~~~l~~~~~~L~~gG~l~~~~~~  293 (336)
T 2yx1_A          260 NRVIMNLPK-FAHKFIDKALDIVEEGGVIHYYTIG  293 (336)
T ss_dssp             EEEEECCTT-TGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             cEEEECCcH-hHHHHHHHHHHHcCCCCEEEEEEee
Confidence            999998532 3447889999999999999886544

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.51  E-value=9.6e-15  Score=110.61  Aligned_cols=120  Identities=13%  Similarity=0.109  Sum_probs=86.8

Q ss_pred             HHHHHHHHHc---CCCEEEEEcccccHHHHHHHhh--CCCCCEEEEEeCCcchHHHHHHHHHhc---CCCCc--------
Q 029803            9 QLMAMLLRLV---NAKKTIEIGVFTGYSLLLTALT--IPEDGQITAIDVNRETYEIGLPIIKKA---GVDHK--------   72 (187)
Q Consensus         9 ~ll~~l~~~~---~~~~vLeiG~g~G~~~~~la~~--~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~~~~--------   72 (187)
                      .++..++...   ++.+|||+|||+|..+..++..  .+ ..+|+++|+++.+++.|++++...   ++.++        
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~-~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~  116 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRS-LRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQS  116 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGG-EEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccC-CCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhh
Confidence            4555555432   5679999999999999999987  33 579999999999999999988765   43322        


Q ss_pred             -----------------EE-------------EEEcchHHHHHHHhhcccCCCceeEEEEeCCC------------cccH
Q 029803           73 -----------------IN-------------FIESEALSVLDQLLKYSENEGSFDYAFVDADK------------DNYC  110 (187)
Q Consensus        73 -----------------~~-------------~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~------------~~~~  110 (187)
                                       ++             +.++|+.+..+....  ....+||+|+++...            ..+.
T Consensus       117 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~  194 (250)
T 1o9g_A          117 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAV--LAGSAPDVVLTDLPYGERTHWEGQVPGQPVA  194 (250)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHH--HTTCCCSEEEEECCGGGSSSSSSCCCHHHHH
T ss_pred             hhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccc--cCCCCceEEEeCCCeeccccccccccccHHH
Confidence                             55             899998764321000  013489999997421            2244


Q ss_pred             HHHHHHHhccCCCeEEEEeCC
Q 029803          111 NYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus       111 ~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+++++.++|+|||++++.+.
T Consensus       195 ~~l~~~~~~LkpgG~l~~~~~  215 (250)
T 1o9g_A          195 GLLRSLASALPAHAVIAVTDR  215 (250)
T ss_dssp             HHHHHHHHHSCTTCEEEEEES
T ss_pred             HHHHHHHHhcCCCcEEEEeCc
Confidence            788999999999999998433

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.50  E-value=9.5e-15  Score=110.94  Aligned_cols=104  Identities=18%  Similarity=0.237  Sum_probs=85.2

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..++...  +.+|+++|+++.+++.+++++...   .+++++++|+.+. +      ...++
T Consensus        53 ~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~------~~~~~  120 (266)
T 3ujc_A           53 LNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTK-E------FPENN  120 (266)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTC-C------CCTTC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccC-C------CCCCc
Confidence            3467799999999999999999875  579999999999999999886543   5799999998753 1      12579


Q ss_pred             eeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           97 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ||+|++....     .....+++++.++|+|||.+++.+..
T Consensus       121 fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  161 (266)
T 3ujc_A          121 FDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYC  161 (266)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence            9999987532     45567899999999999999997654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.50  E-value=7.5e-14  Score=99.36  Aligned_cols=100  Identities=11%  Similarity=0.060  Sum_probs=81.5

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...++.+|||+|||+|..+..++...   .+++++|+++.+++.++++      ..++++..+| .   + +     ..+
T Consensus        14 ~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d-~---~-~-----~~~   74 (170)
T 3i9f_A           14 FEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK------FDSVITLSDP-K---E-I-----PDN   74 (170)
T ss_dssp             HSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH------CTTSEEESSG-G---G-S-----CTT
T ss_pred             CcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC-C---C-C-----CCC
Confidence            45677899999999999999999864   4999999999999999988      2368999988 1   1 1     257


Q ss_pred             ceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803           96 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLWG  134 (187)
Q Consensus        96 ~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      +||+|++...   ..+...+++++.+.|+|||.+++.+....
T Consensus        75 ~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  116 (170)
T 3i9f_A           75 SVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKE  116 (170)
T ss_dssp             CEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred             ceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCcc
Confidence            8999998753   34567889999999999999999765543

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.50  E-value=2.7e-14  Score=108.06  Aligned_cols=99  Identities=10%  Similarity=0.188  Sum_probs=81.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..++...+  .+++++|+++.+++.+++++.    ..+++++.+|+.+. +      ...++|
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~-~------~~~~~f  109 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGA--KKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDI-A------IEPDAY  109 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGC-C------CCTTCE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhC-C------CCCCCe
Confidence            3678999999999999999998643  399999999999999998864    35799999998653 1      124799


Q ss_pred             eEEEEeCC---CcccHHHHHHHHhccCCCeEEEEe
Q 029803           98 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        98 D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++...   ......+++++.++|+|||.+++.
T Consensus       110 D~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~  144 (253)
T 3g5l_A          110 NVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS  144 (253)
T ss_dssp             EEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence            99998753   345678999999999999999985

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.50  E-value=1.2e-13  Score=106.49  Aligned_cols=105  Identities=12%  Similarity=0.136  Sum_probs=85.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|..+..++.. + ..+++++|+++.+++.+++++...+...+++++++|+.+..  +    ...++|
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~----~~~~~f  134 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-G-IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH--M----DLGKEF  134 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-T-CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC--C----CCSSCE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-C-CCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccc--c----CCCCCc
Confidence            57789999999999999888875 2 46999999999999999999998877678999999987531  1    024789


Q ss_pred             eEEEEeCCC-------cccHHHHHHHHhccCCCeEEEEeC
Q 029803           98 DYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        98 D~i~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      |+|++....       .....+++++.++|+|||.+++..
T Consensus       135 D~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  174 (298)
T 1ri5_A          135 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV  174 (298)
T ss_dssp             EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            999987532       234678999999999999999864

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.50  E-value=8.9e-14  Score=105.81  Aligned_cols=106  Identities=14%  Similarity=0.097  Sum_probs=82.6

Q ss_pred             HHHHHHHHH-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            9 QLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         9 ~ll~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      .++..+... .++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++.      +++++++|+.+..   
T Consensus        39 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~------~~~~~~~d~~~~~---  106 (263)
T 3pfg_A           39 DLAALVRRHSPKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP------DAVLHHGDMRDFS---  106 (263)
T ss_dssp             HHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT------TSEEEECCTTTCC---
T ss_pred             HHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCEEEECChHHCC---
Confidence            334444433 34589999999999999999876   4599999999999999998752      5899999987631   


Q ss_pred             hhcccCCCceeEEEEeC-CC------cccHHHHHHHHhccCCCeEEEEeCC
Q 029803           88 LKYSENEGSFDYAFVDA-DK------DNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~-~~------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                           ..++||+|++.. ..      .....+++++.++|+|||+++++..
T Consensus       107 -----~~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~  152 (263)
T 3pfg_A          107 -----LGRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW  152 (263)
T ss_dssp             -----CSCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             -----ccCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence                 147899999875 21      2445679999999999999999754

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.50  E-value=1.8e-13  Score=108.58  Aligned_cols=103  Identities=15%  Similarity=0.136  Sum_probs=84.5

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...++.+|||||||+|..+..+++. + ..+|+++|+++ +++.++++++.+++.++++++.+|+.+..        ..+
T Consensus        47 ~~~~~~~VLDiGcGtG~ls~~la~~-g-~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~--------~~~  115 (348)
T 2y1w_A           47 TDFKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--------LPE  115 (348)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--------CSS
T ss_pred             ccCCcCEEEEcCCCccHHHHHHHhC-C-CCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC--------CCC
Confidence            3457889999999999999999885 2 56999999996 88999999999898788999999987531        136


Q ss_pred             ceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEe
Q 029803           96 SFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +||+|++...     .+.....+..+.++|+|||++++.
T Consensus       116 ~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          116 QVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             CEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred             ceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence            8999998742     244567788889999999999854

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.49  E-value=2.1e-13  Score=108.86  Aligned_cols=104  Identities=13%  Similarity=0.237  Sum_probs=83.9

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...++++|||||||+|..++.+|++.  ..+|++||.++ +++.|+++++.+++.++++++++++.+.  .      .++
T Consensus        80 ~~~~~k~VLDvG~GtGiLs~~Aa~aG--A~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~--~------lpe  148 (376)
T 4hc4_A           80 AALRGKTVLDVGAGTGILSIFCAQAG--ARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETV--E------LPE  148 (376)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC--C------CSS
T ss_pred             HhcCCCEEEEeCCCccHHHHHHHHhC--CCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeee--c------CCc
Confidence            45689999999999999998888753  35899999986 8999999999999999999999998764  1      147


Q ss_pred             ceeEEEEeC------CCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           96 SFDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        96 ~~D~i~~d~------~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ++|+|++..      .......++....++|+|||.++.+.
T Consensus       149 ~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~iP~~  189 (376)
T 4hc4_A          149 QVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPAS  189 (376)
T ss_dssp             CEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEESCE
T ss_pred             cccEEEeecccccccccchhhhHHHHHHhhCCCCceECCcc
Confidence            899998742      22345566676779999999998643

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.49  E-value=2.4e-13  Score=106.09  Aligned_cols=119  Identities=18%  Similarity=0.166  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      ..++..++...++.+|||+|||+|..+..++..+...++|+++|+++.+++.++++++.+++. +++++++|+.+.....
T Consensus        91 s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~  169 (309)
T 2b9e_A           91 SCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSD  169 (309)
T ss_dssp             GGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTC
T ss_pred             HHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCChHhcCccc
Confidence            345556666778889999999999999999987654689999999999999999999999885 5999999987642211


Q ss_pred             hhcccCCCceeEEEEeCCCc---------c-----------c-------HHHHHHHHhccCCCeEEEEeCCC
Q 029803           88 LKYSENEGSFDYAFVDADKD---------N-----------Y-------CNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~~---------~-----------~-------~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .    ...+||.|++|+...         +           .       ..+++.++++++ ||.|+...+.
T Consensus       170 ~----~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs  236 (309)
T 2b9e_A          170 P----RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS  236 (309)
T ss_dssp             G----GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred             c----ccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence            0    015799999984321         0           0       134667777786 9999886554

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.49  E-value=3.9e-13  Score=105.78  Aligned_cols=103  Identities=8%  Similarity=0.037  Sum_probs=86.8

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  100 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  100 (187)
                      .+|||+|||+|..+..+++..| +.+++++|+ +.+++.+++++...++.++++++.+|..+.   +      .++||+|
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~------~~~~D~v  237 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEP-SARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQE---V------PSNGDIY  237 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTTC---C------CSSCSEE
T ss_pred             CEEEEeCCCchHHHHHHHHHCC-CCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCCC---C------CCCCCEE
Confidence            8999999999999999999887 789999999 999999999988777777899999998652   1      3579999


Q ss_pred             EEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803          101 FVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWG  134 (187)
Q Consensus       101 ~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      ++....     .....+++++.+.|+|||.+++.+...+
T Consensus       238 ~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~  276 (334)
T 2ip2_A          238 LLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTIS  276 (334)
T ss_dssp             EEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred             EEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence            987532     2234789999999999999998876643

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.49  E-value=9.8e-14  Score=105.24  Aligned_cols=101  Identities=22%  Similarity=0.237  Sum_probs=82.3

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++ . +...++++.++|+.+. + +     ..++
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~-~~~~~~~~~~~d~~~~-~-~-----~~~~  104 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-A-GVDRKVQVVQADARAI-P-L-----PDES  104 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-T-TSCTTEEEEESCTTSC-C-S-----CTTC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-h-ccCCceEEEEcccccC-C-C-----CCCC
Confidence            356789999999999999999875   579999999999999999987 2 3345799999998643 1 1     2468


Q ss_pred             eeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ||+|++...   ..+...+++++.++|+|||.+++.
T Consensus       105 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~  140 (263)
T 2yqz_A          105 VHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG  140 (263)
T ss_dssp             EEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence            999998753   234578899999999999999986

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.49  E-value=4.2e-14  Score=107.14  Aligned_cols=99  Identities=19%  Similarity=0.153  Sum_probs=82.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..++...+ +.+++++|+++.+++.++++      ..+++++.+|+.+..        ..++
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~d~~~~~--------~~~~   95 (259)
T 2p35_A           31 LERVLNGYDLGCGPGNSTELLTDRYG-VNVITGIDSDDDMLEKAADR------LPNTNFGKADLATWK--------PAQK   95 (259)
T ss_dssp             CSCCSSEEEETCTTTHHHHHHHHHHC-TTSEEEEESCHHHHHHHHHH------STTSEEEECCTTTCC--------CSSC
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHh------CCCcEEEECChhhcC--------ccCC
Confidence            34678999999999999999999876 78999999999999999987      236899999986532        1478


Q ss_pred             eeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeC
Q 029803           97 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        97 ~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ||+|++...   ..+...+++++.++|+|||.+++..
T Consensus        96 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  132 (259)
T 2p35_A           96 ADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQM  132 (259)
T ss_dssp             EEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEe
Confidence            999999753   2456788999999999999999864

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.49  E-value=6.4e-14  Score=108.65  Aligned_cols=104  Identities=11%  Similarity=0.122  Sum_probs=84.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC--CcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ++.+|||||||+|..+..++..   +.+|+++|+++.+++.+++++...+..  .+++++++|+.+. +       ..++
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~-~-------~~~~  150 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF-A-------LDKR  150 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC-C-------CSCC
T ss_pred             CCCcEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC-C-------cCCC
Confidence            4459999999999999999986   569999999999999999999876532  5799999998763 1       1478


Q ss_pred             eeEEEEeC------CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           97 FDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        97 ~D~i~~d~------~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ||+|++..      .......+++++.++|+|||++++.....
T Consensus       151 fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  193 (299)
T 3g2m_A          151 FGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMS  193 (299)
T ss_dssp             EEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             cCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecC
Confidence            99998752      11235778999999999999999965443

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.49  E-value=2.3e-13  Score=105.97  Aligned_cols=107  Identities=18%  Similarity=0.178  Sum_probs=76.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC-----cEEEEEcchH-----HHHHHHh
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-----KINFIESEAL-----SVLDQLL   88 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-----~~~~~~~d~~-----~~~~~~~   88 (187)
                      ++.+|||||||+|..+..++.. . ..+|+++|+|+++++.|+++....+...     .+++.+.|..     ..++.. 
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~-~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~-  124 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG-E-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREV-  124 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTT-
T ss_pred             CCCeEEEEecCCcHhHHHHHhc-C-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcc-
Confidence            3679999999999765555543 1 4699999999999999999987655321     2567777661     112211 


Q ss_pred             hcccCCCceeEEEEeCC------CcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           89 KYSENEGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                         ...++||+|++...      .++...+++++.++|||||++++...
T Consensus       125 ---~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          125 ---FYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             ---CCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---ccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence               12468999987632      13457899999999999999998644

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.48  E-value=2.1e-14  Score=108.86  Aligned_cols=97  Identities=14%  Similarity=0.200  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHc-----CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc
Q 029803            5 TIHGQLMAMLLRLV-----NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   79 (187)
Q Consensus         5 ~~~~~ll~~l~~~~-----~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   79 (187)
                      +....++..++...     ++.+|||+|||+|..+..++...+ +.+|+++|+++.+++.|++++..+++.++++++++|
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d  124 (254)
T 2h00_A           46 LNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVP  124 (254)
T ss_dssp             HHHHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECC
T ss_pred             HHHHHHHHHHHhhccccCCCCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcc
Confidence            45556666666533     467999999999999999988765 689999999999999999999998888789999999


Q ss_pred             hHH-HHHHHhhcccCCCceeEEEEeC
Q 029803           80 ALS-VLDQLLKYSENEGSFDYAFVDA  104 (187)
Q Consensus        80 ~~~-~~~~~~~~~~~~~~~D~i~~d~  104 (187)
                      +.+ ....+..  ...++||+|+++.
T Consensus       125 ~~~~~~~~~~~--~~~~~fD~i~~np  148 (254)
T 2h00_A          125 QKTLLMDALKE--ESEIIYDFCMCNP  148 (254)
T ss_dssp             TTCSSTTTSTT--CCSCCBSEEEECC
T ss_pred             hhhhhhhhhhc--ccCCcccEEEECC
Confidence            754 2222210  0015899999984

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.48  E-value=3.1e-13  Score=101.28  Aligned_cols=107  Identities=21%  Similarity=0.279  Sum_probs=83.7

Q ss_pred             HHHHHHHHH-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            9 QLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         9 ~ll~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      .++..+... .++.+|||+|||+|..+..++..    .+++++|+++.+++.+++++...+  .+++++++|+.+..   
T Consensus        22 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~---   92 (243)
T 3d2l_A           22 EWVAWVLEQVEPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELE---   92 (243)
T ss_dssp             HHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCC---
T ss_pred             HHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcC---
Confidence            344444443 35689999999999999988875    699999999999999999988765  35899999986531   


Q ss_pred             hhcccCCCceeEEEEeCC-------CcccHHHHHHHHhccCCCeEEEEe
Q 029803           88 LKYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                           ..++||+|++...       ......+++++.++|+|||.++++
T Consensus        93 -----~~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           93 -----LPEPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             -----CSSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----CCCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence                 1368999998641       134456889999999999999984

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.48  E-value=3.8e-14  Score=105.74  Aligned_cols=93  Identities=14%  Similarity=0.076  Sum_probs=76.9

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC-CC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN-EG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~   95 (187)
                      ..++.+|||+|||+|..+..++..   +.+|+++|+++.+++.++++      ..+++++++|+.+.++.      . .+
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~------~~~~  110 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPA------GLGA  110 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCT------TCCC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCC------cCCC
Confidence            357789999999999999999986   56999999999999999988      23689999998543221      2 47


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      +||+|++..   ....+++++.++|+|||.++
T Consensus       111 ~fD~v~~~~---~~~~~l~~~~~~LkpgG~l~  139 (226)
T 3m33_A          111 PFGLIVSRR---GPTSVILRLPELAAPDAHFL  139 (226)
T ss_dssp             CEEEEEEES---CCSGGGGGHHHHEEEEEEEE
T ss_pred             CEEEEEeCC---CHHHHHHHHHHHcCCCcEEE
Confidence            899999973   45567888999999999998

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.48  E-value=7.3e-14  Score=104.09  Aligned_cols=105  Identities=23%  Similarity=0.305  Sum_probs=84.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC----CcEEEEEcchHHHHHHHhhccc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD----HKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      ..++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++...++.    .++++..+|+.+. +      .
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~-~------~   97 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSL-S------F   97 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSC-C------S
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEeccccc-C------C
Confidence            346789999999999999999986   569999999999999999998776652    3689999998653 1      1


Q ss_pred             CCCceeEEEEeCCCc---c---cHHHHHHHHhccCCCeEEEEeCC
Q 029803           93 NEGSFDYAFVDADKD---N---YCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~---~---~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..++||+|++.....   +   ...+++++.++|+|||++++.+.
T Consensus        98 ~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A           98 HDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             CTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEEC
Confidence            257899999875322   2   23789999999999999998654

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.47  E-value=6e-13  Score=105.79  Aligned_cols=106  Identities=13%  Similarity=0.084  Sum_probs=88.4

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..+++..| +.+++++|+ +.+++.+++++...++.++++++.+|+.+.  .       ...
T Consensus       188 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~-------~~~  256 (359)
T 1x19_A          188 LDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKE--S-------YPE  256 (359)
T ss_dssp             CTTCCEEEEESCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTS--C-------CCC
T ss_pred             CCCCCEEEEECCcccHHHHHHHHHCC-CCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccC--C-------CCC
Confidence            45678999999999999999999987 789999999 999999999999888888899999998753  1       134


Q ss_pred             eeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           97 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        97 ~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +|+|++....     +....+++++.+.|+|||.+++.+...
T Consensus       257 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~  298 (359)
T 1x19_A          257 ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI  298 (359)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred             CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence            4999987532     225678999999999999998766554

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.47  E-value=7.7e-14  Score=105.36  Aligned_cols=103  Identities=8%  Similarity=0.101  Sum_probs=83.1

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..++...  ..+++++|+++.+++.+++++...   .+++++++|+.+. +      ...++
T Consensus        91 ~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~-~------~~~~~  158 (254)
T 1xtp_A           91 GHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETA-T------LPPNT  158 (254)
T ss_dssp             TCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGC-C------CCSSC
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHC-C------CCCCC
Confidence            3467899999999999999988764  358999999999999999987543   4699999998653 1      12468


Q ss_pred             eeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCC
Q 029803           97 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        97 ~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ||+|++....     .....+++++.++|+|||++++.+.
T Consensus       159 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          159 YDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            9999987532     2356789999999999999999764

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.47  E-value=1.4e-13  Score=101.36  Aligned_cols=97  Identities=16%  Similarity=0.115  Sum_probs=79.1

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++       ++++..+|+.+..        ..++
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~--------~~~~  102 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD--------AIDA  102 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC--------CCSC
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC--------CCCc
Confidence            456789999999999999999986   569999999999999999887       3567788876532        2579


Q ss_pred             eeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCC
Q 029803           97 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        97 ~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ||+|++....     +....+++++.++|+|||++++...
T Consensus       103 fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  142 (211)
T 3e23_A          103 YDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYK  142 (211)
T ss_dssp             EEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEc
Confidence            9999987532     2456789999999999999998643

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.47  E-value=6.2e-13  Score=95.04  Aligned_cols=103  Identities=16%  Similarity=0.138  Sum_probs=79.1

Q ss_pred             cHHHHHHHHHHHHH--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            4 LTIHGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         4 ~~~~~~ll~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      .+.+..++.. +..  .++.+|||+|||+|..+..+++.   . +|+++|+++.+++.          .++++++++|+.
T Consensus         7 ~~~~~~l~~~-l~~~~~~~~~vLD~GcG~G~~~~~l~~~---~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~   71 (170)
T 3q87_B            7 GEDTYTLMDA-LEREGLEMKIVLDLGTSTGVITEQLRKR---N-TVVSTDLNIRALES----------HRGGNLVRADLL   71 (170)
T ss_dssp             CHHHHHHHHH-HHHHTCCSCEEEEETCTTCHHHHHHTTT---S-EEEEEESCHHHHHT----------CSSSCEEECSTT
T ss_pred             CccHHHHHHH-HHhhcCCCCeEEEeccCccHHHHHHHhc---C-cEEEEECCHHHHhc----------ccCCeEEECChh
Confidence            4555666666 455  67889999999999999999875   3 99999999999886          346889999987


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCCc------------ccHHHHHHHHhccCCCeEEEEeC
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDADKD------------NYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~~~------------~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +.++        .++||+|+++....            .....++.+.+.+ |||.+++..
T Consensus        72 ~~~~--------~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~  123 (170)
T 3q87_B           72 CSIN--------QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLV  123 (170)
T ss_dssp             TTBC--------GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEE
T ss_pred             hhcc--------cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEE
Confidence            6321        36899999975321            2356778888888 999998853

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.47  E-value=6.7e-14  Score=104.59  Aligned_cols=103  Identities=16%  Similarity=0.133  Sum_probs=78.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-cchHHHH---HHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN-RETYEIG---LPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~-~~~~~~a---~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      .++.+|||||||+|..+..++...+ +.+|+++|++ +.+++.|   +++....++. ++++.++|+.+....+      
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~-~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-~v~~~~~d~~~l~~~~------   94 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQ-NTFYIGIDPVKENLFDISKKIIKKPSKGGLS-NVVFVIAAAESLPFEL------   94 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCT-TEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-SEEEECCBTTBCCGGG------
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-CeEEEEcCHHHhhhhc------
Confidence            4677999999999999999997655 7899999999 5555555   7777777765 5999999987641111      


Q ss_pred             CCceeEEEEeCCCc--------ccHHHHHHHHhccCCCeEEEE
Q 029803           94 EGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        94 ~~~~D~i~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ...+|.|++.....        ....+++++.++|||||.+++
T Consensus        95 ~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           95 KNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             TTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             cCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            25678887764221        235678999999999999998

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.47  E-value=8.2e-14  Score=104.47  Aligned_cols=108  Identities=14%  Similarity=0.217  Sum_probs=84.7

Q ss_pred             HHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   89 (187)
Q Consensus        10 ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   89 (187)
                      .+..++...++.+|||||||+|..+..++.. . ..+++++|+++.+++.+++++..    .+++++++|+.+..  +  
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~-~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~--~--  103 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH-G-ASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLH--L--  103 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCC--C--
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHC-C-CCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhcc--C--
Confidence            3444445557889999999999999999886 2 23999999999999999987532    36899999987531  1  


Q ss_pred             cccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeC
Q 029803           90 YSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                         ..++||+|++...   ......+++++.++|+|||.+++..
T Consensus       104 ---~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~  144 (243)
T 3bkw_A          104 ---PQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFST  144 (243)
T ss_dssp             ---CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---CCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEe
Confidence               2478999998753   2356788999999999999999854

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.47  E-value=1.7e-13  Score=105.26  Aligned_cols=100  Identities=17%  Similarity=0.112  Sum_probs=81.7

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +...++.+|||||||+|..+..++.  + +.+|+++|+++.+++.+++++      .++++..+|+.+. +       ..
T Consensus        53 l~~~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~-------~~  115 (279)
T 3ccf_A           53 LNPQPGEFILDLGCGTGQLTEKIAQ--S-GAEVLGTDNAATMIEKARQNY------PHLHFDVADARNF-R-------VD  115 (279)
T ss_dssp             HCCCTTCEEEEETCTTSHHHHHHHH--T-TCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTC-C-------CS
T ss_pred             hCCCCCCEEEEecCCCCHHHHHHHh--C-CCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhC-C-------cC
Confidence            3455778999999999999999998  3 789999999999999998875      3588899998652 1       14


Q ss_pred             CceeEEEEeCCC---cccHHHHHHHHhccCCCeEEEEeCC
Q 029803           95 GSFDYAFVDADK---DNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        95 ~~~D~i~~d~~~---~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ++||+|++....   .+...+++++.++|+|||.+++...
T Consensus       116 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~  155 (279)
T 3ccf_A          116 KPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFG  155 (279)
T ss_dssp             SCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEec
Confidence            689999987532   4567889999999999999998543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.46  E-value=9.9e-13  Score=101.68  Aligned_cols=109  Identities=13%  Similarity=0.103  Sum_probs=76.8

Q ss_pred             CCCEEEEEcccccHHHHHHH----hhCCCCCEE--EEEeCCcchHHHHHHHHHhc-CCCC-cEEEEEcchHHHHHHHhhc
Q 029803           19 NAKKTIEIGVFTGYSLLLTA----LTIPEDGQI--TAIDVNRETYEIGLPIIKKA-GVDH-KINFIESEALSVLDQLLKY   90 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la----~~~~~~~~v--~~iD~~~~~~~~a~~~~~~~-~~~~-~~~~~~~d~~~~~~~~~~~   90 (187)
                      ++.+|||||||+|..+..++    ...+ ..++  +++|++++|++.+++++... +..+ ++.+..+++.+....+. .
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~-~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~  129 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYP-GVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRML-E  129 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHST-TCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHH-T
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCC-CceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhc-c
Confidence            45689999999998765443    3333 5654  99999999999999998754 3332 23445677665432210 0


Q ss_pred             ccCCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEe
Q 029803           91 SENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        91 ~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +...++||+|++..   +..+....++++.++|||||.+++.
T Consensus       130 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~  171 (292)
T 2aot_A          130 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII  171 (292)
T ss_dssp             TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEE
Confidence            01247899999875   3455678999999999999999985

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.45  E-value=1.6e-13  Score=109.59  Aligned_cols=103  Identities=16%  Similarity=0.153  Sum_probs=86.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|..+..+++..+ +.+++++|+ +.+++.+++++...++.++++++.+|..+.+         ...|
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~  249 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL---------PVTA  249 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SCCE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC-CCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCcC---------CCCC
Confidence            4678999999999999999999886 789999999 9999999999998888778999999986521         2359


Q ss_pred             eEEEEeCCCc-----ccHHHHHHHHhccCCCeEEEEeCC
Q 029803           98 DYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        98 D~i~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |+|++.....     ....+++++.+.|+|||.+++.+.
T Consensus       250 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          250 DVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            9999875321     224789999999999999888665

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.45  E-value=5.3e-14  Score=107.13  Aligned_cols=109  Identities=13%  Similarity=0.048  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      +...+.+...+...++.+|||||||+|..+..++.  + +.+|+++|+++.+++.++++.       +++++++|+.+. 
T Consensus        20 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~-   88 (261)
T 3ege_A           20 IRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN--Q-GLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENL-   88 (261)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT--T-TCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSC-
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh--C-CCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhC-
Confidence            33444444545556889999999999999999997  3 789999999999888776543       699999998652 


Q ss_pred             HHHhhcccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           85 DQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +      ...++||+|++...   ..+...+++++.++|+ ||.+++.+.
T Consensus        89 ~------~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A           89 A------LPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             C------SCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             C------CCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEc
Confidence            1      12479999998753   3566789999999999 997766544

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.45  E-value=3.1e-13  Score=108.15  Aligned_cols=103  Identities=14%  Similarity=0.151  Sum_probs=83.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++++|||+| |+|..+..++...+ ..+|+++|+++++++.|+++++..++. +++++++|+.+.++..     ..++||
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~-~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~-----~~~~fD  243 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGL-PKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDY-----ALHKFD  243 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTC-CSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTT-----TSSCBS
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhh-----ccCCcc
Confidence            578999999 99999999988754 579999999999999999999998876 7999999997632210     135899


Q ss_pred             EEEEeCCC--cccHHHHHHHHhccCCCe-EEEEe
Q 029803           99 YAFVDADK--DNYCNYHERLMKLLKVGG-IAVYD  129 (187)
Q Consensus        99 ~i~~d~~~--~~~~~~~~~~~~~L~~gG-~lv~~  129 (187)
                      +|+++...  .....+++++.+.|+||| ++++.
T Consensus       244 ~Vi~~~p~~~~~~~~~l~~~~~~LkpgG~~~~~~  277 (373)
T 2qm3_A          244 TFITDPPETLEAIRAFVGRGIATLKGPRCAGYFG  277 (373)
T ss_dssp             EEEECCCSSHHHHHHHHHHHHHTBCSTTCEEEEE
T ss_pred             EEEECCCCchHHHHHHHHHHHHHcccCCeEEEEE
Confidence            99998632  234678899999999999 43443

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.45  E-value=2.3e-13  Score=108.19  Aligned_cols=104  Identities=15%  Similarity=0.195  Sum_probs=87.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|..+..+++..+ +.+++++|+ +++++.+++++...++.++++++.+|..+.+         ...|
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~  250 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL---------PRKA  250 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SSCE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCC-CCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCC---------CCCc
Confidence            4678999999999999999999886 789999999 9999999999998888778999999986521         2359


Q ss_pred             eEEEEeCCCc-----ccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           98 DYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        98 D~i~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |+|++.....     ....+++++.+.|+|||.+++.+..
T Consensus       251 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          251 DAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            9999875321     2246899999999999999887665

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.45  E-value=2.1e-13  Score=102.24  Aligned_cols=101  Identities=14%  Similarity=0.190  Sum_probs=82.1

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..++..   +.+++++|+++.+++.++++.    ...+++++++|+.+. +      ...++
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~-~------~~~~~  116 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSL-P------FENEQ  116 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBC-S------SCTTC
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcC-C------CCCCC
Confidence            346789999999999999999986   569999999999999998774    235699999998653 1      12579


Q ss_pred             eeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           97 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        97 ~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ||+|++...   ......+++++.++|+|||++++...
T Consensus       117 fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          117 FEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             EEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEc
Confidence            999998753   34566889999999999999998653

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.44  E-value=2.1e-13  Score=107.90  Aligned_cols=100  Identities=19%  Similarity=0.211  Sum_probs=82.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...+..  .+++.+|..+..         .++|
T Consensus       195 ~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~---------~~~f  262 (343)
T 2pjd_A          195 HTKGKVLDVGCGAGVLSVAFARHSP-KIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEV---------KGRF  262 (343)
T ss_dssp             TCCSBCCBTTCTTSHHHHHHHHHCT-TCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTC---------CSCE
T ss_pred             CCCCeEEEecCccCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccc---------cCCe
Confidence            3567999999999999999999875 679999999999999999999887764  567888876531         4689


Q ss_pred             eEEEEeCCCc--------ccHHHHHHHHhccCCCeEEEEe
Q 029803           98 DYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        98 D~i~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|+++....        ....+++++.+.|+|||.+++.
T Consensus       263 D~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~  302 (343)
T 2pjd_A          263 DMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIV  302 (343)
T ss_dssp             EEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             eEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEE
Confidence            9999975322        2456899999999999999884

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.44  E-value=5.5e-13  Score=106.71  Aligned_cols=115  Identities=22%  Similarity=0.188  Sum_probs=89.4

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      .+..+..+..+. ..++.+|||+|||+|..++.++...+ .++|+++|+++.+++.|++++..+++.+++++.++|+.+.
T Consensus       203 ~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~-~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~  280 (373)
T 3tm4_A          203 KASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRY-SGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL  280 (373)
T ss_dssp             CHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTC-CSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG
T ss_pred             cHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence            455666666666 67788999999999999999998754 5699999999999999999999999877899999999874


Q ss_pred             HHHHhhcccCCCceeEEEEeCCC-------c----ccHHHHHHHHhccCCCeEEEE
Q 029803           84 LDQLLKYSENEGSFDYAFVDADK-------D----NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~-------~----~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..       ..++||+|+++...       .    .+..+++.+.+.| .|+.+++
T Consensus       281 ~~-------~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i  328 (373)
T 3tm4_A          281 SQ-------YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFI  328 (373)
T ss_dssp             GG-------TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEE
T ss_pred             Cc-------ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEE
Confidence            21       14789999998531       1    1356777777877 3333333

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.44  E-value=3.6e-13  Score=101.36  Aligned_cols=105  Identities=14%  Similarity=0.095  Sum_probs=81.3

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH--HHhhcccCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD--QLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~~~~   94 (187)
                      ..++.+|||+|||+|..+..++...+   +|+++|+++.+++.+++++.    ..+++++++|+.+...  .+..    .
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~----~  122 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHS----E  122 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHH----H
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc----ccCceEEECccccccccccccc----c
Confidence            35667999999999999999998754   89999999999999998862    2369999999876322  1100    1


Q ss_pred             CceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           95 GSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        95 ~~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .+||+|++...     ......+++++.++|+|||++++.+..
T Consensus       123 ~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          123 IGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             HCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             cCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            35999998742     224568999999999999998776544

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.43  E-value=1.6e-12  Score=103.82  Aligned_cols=122  Identities=12%  Similarity=0.093  Sum_probs=87.4

Q ss_pred             CCcHHHHH-HHHHHHHHc--CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc
Q 029803            2 LLLTIHGQ-LMAMLLRLV--NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES   78 (187)
Q Consensus         2 ~~~~~~~~-ll~~l~~~~--~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~   78 (187)
                      ++++...+ ++..+....  ++.+|||+|||+|..++.++..   ..+|+++|+++++++.|++|++.+++. +++++.+
T Consensus       193 Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~-~v~~~~~  268 (369)
T 3bt7_A          193 QPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHID-NVQIIRM  268 (369)
T ss_dssp             CSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCC-SEEEECC
T ss_pred             cCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEC
Confidence            34444433 444444433  3578999999999999999875   469999999999999999999998885 6999999


Q ss_pred             chHHHHHHHhhcc---------cCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           79 EALSVLDQLLKYS---------ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        79 d~~~~~~~~~~~~---------~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      |+.+.++.+....         ....+||+|++|+....   ..+.+.+.|+++|.+++..
T Consensus       269 d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g---~~~~~~~~l~~~g~ivyvs  326 (369)
T 3bt7_A          269 AAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSG---LDSETEKMVQAYPRILYIS  326 (369)
T ss_dssp             CSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTC---CCHHHHHHHTTSSEEEEEE
T ss_pred             CHHHHHHHHhhccccccccccccccCCCCEEEECcCccc---cHHHHHHHHhCCCEEEEEE
Confidence            9998776552110         00037999999975433   2334555666888877743

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=99.43  E-value=7.5e-12  Score=94.71  Aligned_cols=149  Identities=15%  Similarity=0.040  Sum_probs=103.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhh------CCCCCEEEEEe-----CCcc-------------------hHHHHHHH----
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALT------IPEDGQITAID-----VNRE-------------------TYEIGLPI----   63 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~------~~~~~~v~~iD-----~~~~-------------------~~~~a~~~----   63 (187)
                      .-|..|+|+|+..|.++..++..      .....+++++|     +.+.                   ..+..++.    
T Consensus        68 ~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~  147 (257)
T 3tos_A           68 DVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH  147 (257)
T ss_dssp             TSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence            45779999999999999987653      12368999999     3321                   01112222    


Q ss_pred             --HHhcCC-CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-cccHHHHHHHHhccCCCeEEEEeCCCCCccccC
Q 029803           64 --IKKAGV-DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAV  139 (187)
Q Consensus        64 --~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~  139 (187)
                        .+..+. .++++++.|++.+.++.+... ...+++|++++|++. ..+...++.++++|+|||+|+++|..+.+    
T Consensus       148 ~~~~~~g~~~~~i~li~G~~~dTL~~~l~~-~~~~~~dlv~ID~D~Y~~t~~~le~~~p~l~~GGvIv~DD~~~~~----  222 (257)
T 3tos_A          148 ECSDFFGHVTQRSVLVEGDVRETVPRYLAE-NPQTVIALAYFDLDLYEPTKAVLEAIRPYLTKGSIVAFDELDNPK----  222 (257)
T ss_dssp             HTTSTTTTSCCSEEEEESCHHHHHHHHHHH-CTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEESSTTCTT----
T ss_pred             hhhhhcCCCCCcEEEEEecHHHHHHHHHHh-CCCCceEEEEEcCcccchHHHHHHHHHHHhCCCcEEEEcCCCCCC----
Confidence              223454 378999999999999886543 224579999999976 45677899999999999999999975322    


Q ss_pred             CCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEeeecCCceEEEE
Q 029803          140 PEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICR  184 (187)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G~~~~~  184 (187)
                                  +. .+++.++.+..........+|+..+...++
T Consensus       223 ------------w~-G~~~A~~ef~~~~~~~i~~~p~~~~~~y~~  254 (257)
T 3tos_A          223 ------------WP-GENIAMRKVLGLDHAPLRLLPGRPAPAYLR  254 (257)
T ss_dssp             ------------CT-HHHHHHHHHTCTTSSCCEECTTCSCCEEEE
T ss_pred             ------------Ch-HHHHHHHHHHhhCCCeEEEccCCCCCEEEE
Confidence                        11 134444444455677888888887776543

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.43  E-value=2.5e-13  Score=100.51  Aligned_cols=104  Identities=13%  Similarity=0.103  Sum_probs=78.2

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHH----HhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII----KKAGVDHKINFIESEALSVLDQLLKYS   91 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~----~~~~~~~~~~~~~~d~~~~~~~~~~~~   91 (187)
                      ...++.+|||+|||+|..+..++...| +.+|+++|+++++++.+.++.    ...++. +++++++|+.+. +.     
T Consensus        24 ~~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-~v~~~~~d~~~l-~~-----   95 (218)
T 3mq2_A           24 RSQYDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEKISAKAAAKPAKGGLP-NLLYLWATAERL-PP-----   95 (218)
T ss_dssp             HTTSSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-TEEEEECCSTTC-CS-----
T ss_pred             hccCCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-ceEEEecchhhC-CC-----
Confidence            355778999999999999999999876 789999999999888643333    234443 699999998763 21     


Q ss_pred             cCCCceeEEEEeCCC--------cccHHHHHHHHhccCCCeEEEEe
Q 029803           92 ENEGSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       ..+. |.+++....        .+...+++++.++|||||.+++.
T Consensus        96 -~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  139 (218)
T 3mq2_A           96 -LSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA  139 (218)
T ss_dssp             -CCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred             -CCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence             1344 777755421        12267899999999999999984

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.43  E-value=7.2e-13  Score=103.39  Aligned_cols=107  Identities=13%  Similarity=0.095  Sum_probs=81.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC------CCCcEEEEEcchHHHH--HHHhhc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG------VDHKINFIESEALSVL--DQLLKY   90 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~------~~~~~~~~~~d~~~~~--~~~~~~   90 (187)
                      ++.+|||+|||+|..+..++.. + ..+++++|+++.+++.+++++...+      ...+++++++|+.+..  ..+.  
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--  109 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG-R-INKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFR--  109 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT-T-CSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCS--
T ss_pred             CCCEEEEECCCCcHHHHHHHhc-C-CCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcc--
Confidence            6789999999999999988874 3 6799999999999999999987642      2346899999987531  0010  


Q ss_pred             ccCCCceeEEEEeCCC-------cccHHHHHHHHhccCCCeEEEEeC
Q 029803           91 SENEGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                       ...++||+|++....       +....+++++.++|+|||++++..
T Consensus       110 -~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (313)
T 3bgv_A          110 -DPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTT  155 (313)
T ss_dssp             -STTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             -cCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence             013589999987533       223578999999999999999853

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.43  E-value=1.2e-12  Score=106.38  Aligned_cols=112  Identities=20%  Similarity=0.173  Sum_probs=86.7

Q ss_pred             CcHHHH-HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            3 LLTIHG-QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         3 ~~~~~~-~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      .++... .++..+....++.+|||+|||+|..++.+++.   ..+|+++|+++++++.|+++++.+++.  ++++.+|+.
T Consensus       273 ~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~  347 (425)
T 2jjq_A          273 TNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDR  347 (425)
T ss_dssp             SBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTT
T ss_pred             cCHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChH
Confidence            344444 34444444667789999999999999999985   469999999999999999999988875  999999997


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCCcccHH-HHHHHHhccCCCeEEEEe
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDADKDNYCN-YHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~-~~~~~~~~L~~gG~lv~~  129 (187)
                      +.+         ..+||+|++|........ +++.+ ..|+|+|++++.
T Consensus       348 ~~~---------~~~fD~Vv~dPPr~g~~~~~~~~l-~~l~p~givyvs  386 (425)
T 2jjq_A          348 EVS---------VKGFDTVIVDPPRAGLHPRLVKRL-NREKPGVIVYVS  386 (425)
T ss_dssp             TCC---------CTTCSEEEECCCTTCSCHHHHHHH-HHHCCSEEEEEE
T ss_pred             HcC---------ccCCCEEEEcCCccchHHHHHHHH-HhcCCCcEEEEE
Confidence            642         137999999976544433 55544 469999999885

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.43  E-value=2.9e-12  Score=98.40  Aligned_cols=110  Identities=10%  Similarity=0.053  Sum_probs=82.6

Q ss_pred             CCCEEEEEcccc---cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH-----hhc
Q 029803           19 NAKKTIEIGVFT---GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL-----LKY   90 (187)
Q Consensus        19 ~~~~vLeiG~g~---G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~   90 (187)
                      ...+|||||||+   |..+..++...+ +.+|+++|++|.+++.+++++..   ..+++++++|+.+....+     ...
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p-~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~~D~~~~~~~~~~~~~~~~  152 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNP-DARVVYVDIDPMVLTHGRALLAK---DPNTAVFTADVRDPEYILNHPDVRRM  152 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCT-TCEEEEEESSHHHHHHHHHHHTT---CTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCC-CCEEEEEECChHHHHHHHHhcCC---CCCeEEEEeeCCCchhhhccchhhcc
Confidence            457999999999   988776666655 78999999999999999998843   357999999986531100     000


Q ss_pred             ccCCCceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           91 SENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                       ....+||+|++...     .......++++.+.|+|||++++.+...
T Consensus       153 -~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~  199 (274)
T 2qe6_A          153 -IDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD  199 (274)
T ss_dssp             -CCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred             -CCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence             11258999998642     1236789999999999999999977653

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.43  E-value=1.4e-13  Score=104.53  Aligned_cols=110  Identities=21%  Similarity=0.117  Sum_probs=81.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC----------------------------
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV----------------------------   69 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~----------------------------   69 (187)
                      .++.+|||+|||+|..+..++....  .+|+++|+++.+++.+++++...+.                            
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            4567899999999999988876522  4899999999999999998764321                            


Q ss_pred             CCcE-EEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           70 DHKI-NFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        70 ~~~~-~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ..++ ++.++|+.+..+.. .  ...++||+|++.....       ....+++++.++|+|||++++.+..
T Consensus       133 ~~~v~~~~~~d~~~~~~~~-~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~  200 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLG-G--VSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL  200 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTT-T--CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             hhhheeEEEeeeccCCCCC-c--cccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence            0127 89999986532110 0  0126899999875322       4667899999999999999997644

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.43  E-value=3.9e-13  Score=95.55  Aligned_cols=99  Identities=16%  Similarity=0.147  Sum_probs=75.2

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH-----HHHHhhcc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-----LDQLLKYS   91 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~~   91 (187)
                      ..++.+|||+|||+|..+..+++.++++.+++++|+++ +++.           .+++++.+|+.+.     ++...   
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~---   84 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERV---   84 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHH---
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccC---
Confidence            45678999999999999999999864468999999999 6532           4689999998653     11111   


Q ss_pred             cCCCceeEEEEeCCCc---cc-----------HHHHHHHHhccCCCeEEEEeCC
Q 029803           92 ENEGSFDYAFVDADKD---NY-----------CNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~---~~-----------~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                       ..++||+|+++....   ..           ..+++.+.++|+|||.+++...
T Consensus        85 -~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           85 -GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             -TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence             246899999975321   11           5788999999999999998543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.43  E-value=8.3e-13  Score=98.72  Aligned_cols=99  Identities=10%  Similarity=0.121  Sum_probs=79.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..+++..   .+++++|+++.+++.+++++      .+++++++|+.+..        ..++|
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~--------~~~~~  101 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFR--------LGRKF  101 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCC--------CSSCE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcc--------cCCCC
Confidence            467899999999999999999874   39999999999999999874      25889999986531        13689


Q ss_pred             eEEEEeCC----C---cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           98 DYAFVDAD----K---DNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        98 D~i~~d~~----~---~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      |+|++...    .   .....+++++.++|+|||.+++.+...
T Consensus       102 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A          102 SAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             cEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            99996432    1   344678999999999999999976443

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.43  E-value=2.2e-13  Score=103.74  Aligned_cols=102  Identities=15%  Similarity=0.180  Sum_probs=73.7

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++....  -...+...+.. ....+      .
T Consensus        41 l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~~--v~~~~~~~~~~-~~~~~------~  108 (261)
T 3iv6_A           41 ENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADRC--VTIDLLDITAE-IPKEL------A  108 (261)
T ss_dssp             TTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSSC--CEEEECCTTSC-CCGGG------T
T ss_pred             cCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhcc--ceeeeeecccc-ccccc------C
Confidence            34567789999999999999999985   5799999999999999999875431  11222222210 00111      4


Q ss_pred             CceeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++||+|+++...     +.....++.+.++| |||.+++.
T Consensus       109 ~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS  147 (261)
T 3iv6_A          109 GHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRAS  147 (261)
T ss_dssp             TCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEE
T ss_pred             CCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEE
Confidence            689999998532     23456788888999 99999885

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.42  E-value=7.4e-13  Score=109.12  Aligned_cols=101  Identities=16%  Similarity=0.170  Sum_probs=82.9

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..+++. + ..+|+++|+++ +++.|++++..+++.++++++++|+.+.  .+      .++
T Consensus       156 ~~~~~~VLDiGcGtG~la~~la~~-~-~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~--~~------~~~  224 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSGILSFFAAQA-G-ARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEV--SL------PEQ  224 (480)
T ss_dssp             GTTTCEEEEESCSTTHHHHHHHHT-T-CSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTC--CC------SSC
T ss_pred             hcCCCEEEEecCcccHHHHHHHHc-C-CCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhC--cc------CCC
Confidence            346789999999999999988874 3 57999999998 9999999999999888899999998763  11      368


Q ss_pred             eeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEE
Q 029803           97 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        97 ~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ||+|++...     .+.....+..+.+.|+|||++++
T Consensus       225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          225 VDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             EEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred             eEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence            999998642     23445667778899999999985

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.42  E-value=7e-13  Score=102.12  Aligned_cols=107  Identities=18%  Similarity=0.207  Sum_probs=88.8

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC----CCCcEEEEEcchHHHHHHHhhcc
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG----VDHKINFIESEALSVLDQLLKYS   91 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~   91 (187)
                      ...+|++||-||.|.|..+.++++..+ ..+|+.+|+++..++.+++.+....    -.++++++.+|+..++..     
T Consensus        80 ~~p~pk~VLIiGgGdG~~~revlk~~~-v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~-----  153 (294)
T 3o4f_A           80 AHGHAKHVLIIGGGDGAMLREVTRHKN-VESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ-----  153 (294)
T ss_dssp             HSSCCCEEEEESCTTSHHHHHHHTCTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC-----
T ss_pred             hCCCCCeEEEECCCchHHHHHHHHcCC-cceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh-----
Confidence            356889999999999999999998754 6799999999999999999986421    146899999999987654     


Q ss_pred             cCCCceeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEe
Q 029803           92 ENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       ..++||+|++|....       ...++++.+.+.|+|||+++..
T Consensus       154 -~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q  197 (294)
T 3o4f_A          154 -TSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQ  197 (294)
T ss_dssp             -SSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEE
T ss_pred             -ccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEe
Confidence             257899999996321       2357999999999999999985

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.41  E-value=3.5e-12  Score=98.28  Aligned_cols=104  Identities=15%  Similarity=0.115  Sum_probs=74.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHHHHHHH-----HhcCCC----CcEEEEEcch----HHH
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPII-----KKAGVD----HKINFIESEA----LSV   83 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~-----~~~~~~----~~~~~~~~d~----~~~   83 (187)
                      .++++|||+|||+|..++.++.. . ..+|+++|+ ++++++.+++++     +..++.    +++++...+.    .+.
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~-~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  155 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLA-G-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL  155 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHT-T-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHc-C-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence            47789999999999999988875 2 359999999 899999999999     544543    3677775442    222


Q ss_pred             HHHHhhcccCCCceeEEEE-eC--CCcccHHHHHHHHhccC---C--CeEEEE
Q 029803           84 LDQLLKYSENEGSFDYAFV-DA--DKDNYCNYHERLMKLLK---V--GGIAVY  128 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~-d~--~~~~~~~~~~~~~~~L~---~--gG~lv~  128 (187)
                      ...+     ..++||+|++ |.  .......+++.+.++|+   |  ||.+++
T Consensus       156 ~~~~-----~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v  203 (281)
T 3bzb_A          156 QRCT-----GLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALV  203 (281)
T ss_dssp             HHHH-----SCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEE
T ss_pred             Hhhc-----cCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEE
Confidence            2211     1478999987 42  24456788999999999   9  997655

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.41  E-value=8.9e-13  Score=95.25  Aligned_cols=104  Identities=13%  Similarity=0.119  Sum_probs=81.6

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      .++..+  ..++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++      .+++++++|+.+. + + 
T Consensus        38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~-~-~-  103 (195)
T 3cgg_A           38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVD-Q-I-  103 (195)
T ss_dssp             HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTS-C-C-
T ss_pred             HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccC-C-C-
Confidence            445444  357789999999999999999886   569999999999999999875      2488899998653 1 1 


Q ss_pred             hcccCCCceeEEEEeCC-C-----cccHHHHHHHHhccCCCeEEEEeC
Q 029803           89 KYSENEGSFDYAFVDAD-K-----DNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~-~-----~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                          ..++||+|++.+. .     +....+++.+.++|+|||.+++..
T Consensus       104 ----~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~  147 (195)
T 3cgg_A          104 ----SETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGF  147 (195)
T ss_dssp             ----CCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----CCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEe
Confidence                2468999999732 1     234678999999999999999854

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.41  E-value=2.1e-13  Score=100.37  Aligned_cols=96  Identities=17%  Similarity=0.185  Sum_probs=76.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..+    + ..+++++|+++.+++.+++++      .+++++++|+.+. +      ...++||
T Consensus        36 ~~~~vLdiG~G~G~~~~~l----~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~------~~~~~fD   97 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL----P-YPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEAL-P------FPGESFD   97 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC----C-CSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSC-C------SCSSCEE
T ss_pred             CCCeEEEECCCCCHhHHhC----C-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccC-C------CCCCcEE
Confidence            6789999999999988766    2 239999999999999999875      3588899987652 1      1246899


Q ss_pred             EEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           99 YAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        99 ~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|++...   ..+...+++++.++|+|||.+++....
T Consensus        98 ~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  134 (211)
T 2gs9_A           98 VVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLE  134 (211)
T ss_dssp             EEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecC
Confidence            9998753   345678899999999999999986543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.40  E-value=7.3e-12  Score=91.79  Aligned_cols=109  Identities=9%  Similarity=0.070  Sum_probs=82.8

Q ss_pred             cHHHHHHHHHHHH---HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            4 LTIHGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         4 ~~~~~~ll~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      ++...+.+...+.   ..++.+|||+|||+|..+..++...  ..+++++|+++.+++.+++++...++  +++++++|+
T Consensus        31 ~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~  106 (207)
T 1wy7_A           31 PGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLG--AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDV  106 (207)
T ss_dssp             CHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCG
T ss_pred             chHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECch
Confidence            3444444444443   3367899999999999999998862  35899999999999999999988776  699999998


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEE
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+.          .++||+|+++...     .....+++.+.+.+  |+++++
T Consensus       107 ~~~----------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~  147 (207)
T 1wy7_A          107 SEF----------NSRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSI  147 (207)
T ss_dssp             GGC----------CCCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEE
T ss_pred             HHc----------CCCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEE
Confidence            763          2589999998631     23457788888888  665554

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.40  E-value=1.8e-13  Score=100.61  Aligned_cols=102  Identities=11%  Similarity=0.070  Sum_probs=80.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..++...+  .+++++|+++.+++.+++++..   ..+++++++|+.+. + +     ..++|
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~--~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~-~-~-----~~~~f  108 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGF--PNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKL-D-F-----PSASF  108 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTC--CCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSC-C-S-----CSSCE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCC--CcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcC-C-C-----CCCcc
Confidence            5678999999999999999998643  3899999999999999998753   24689999998653 1 1     24689


Q ss_pred             eEEEEeCC------------------CcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           98 DYAFVDAD------------------KDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        98 D~i~~d~~------------------~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      |+|++...                  ......+++++.++|+|||.+++.+.
T Consensus       109 D~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~  160 (215)
T 2pxx_A          109 DVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS  160 (215)
T ss_dssp             EEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             cEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence            99997632                  12346789999999999999998643

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.37  E-value=1.6e-12  Score=99.10  Aligned_cols=95  Identities=18%  Similarity=0.210  Sum_probs=76.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|..+..++..++ +.+++++|+++.+++.++++.      .++.+..+|+.+. +      ...++|
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~-~------~~~~~f  149 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-P------FSDTSM  149 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-S------BCTTCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhC-C------CCCCce
Confidence            4678999999999999999999875 689999999999999998764      3578889887542 1      124689


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      |+|++....    ..++++.++|+|||.+++..
T Consensus       150 D~v~~~~~~----~~l~~~~~~L~pgG~l~~~~  178 (269)
T 1p91_A          150 DAIIRIYAP----CKAEELARVVKPGGWVITAT  178 (269)
T ss_dssp             EEEEEESCC----CCHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEeCCh----hhHHHHHHhcCCCcEEEEEE
Confidence            999986543    35788899999999998854

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.37  E-value=6.7e-12  Score=91.64  Aligned_cols=91  Identities=14%  Similarity=0.185  Sum_probs=72.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++.+|||+|||+|..+..++.. + ..+++++|+++.+++.+++++.      +++++++|+.+.          .++||
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~-~-~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~----------~~~~D  112 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLL-G-AESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEI----------SGKYD  112 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHT-T-BSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGC----------CCCEE
T ss_pred             CCCEEEEEeCCccHHHHHHHHc-C-CCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHC----------CCCee
Confidence            6789999999999999999876 3 4589999999999999999864      589999998763          26899


Q ss_pred             EEEEeCCC-----cccHHHHHHHHhccCCCeEEEEe
Q 029803           99 YAFVDADK-----DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        99 ~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|+++...     .....+++.+.+.+  |+++++.
T Consensus       113 ~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~  146 (200)
T 1ne2_A          113 TWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIG  146 (200)
T ss_dssp             EEEECCCC-------CHHHHHHHHHHE--EEEEEEE
T ss_pred             EEEECCCchhccCchhHHHHHHHHHhc--CcEEEEE
Confidence            99998642     22356788888887  5555543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.36  E-value=8.9e-13  Score=100.24  Aligned_cols=95  Identities=17%  Similarity=0.206  Sum_probs=76.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++.+|||||||+|..+..++..   +.+++++|+++.+++.++++..     .+  ++.+|+.+. +      ...++||
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~-~------~~~~~fD  116 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDL-P------FPSGAFE  116 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSC-C------SCTTCEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHC-C------CCCCCEE
Confidence            6789999999999999999875   5699999999999999998753     12  778887542 1      1247899


Q ss_pred             EEEEeCC----CcccHHHHHHHHhccCCCeEEEEeC
Q 029803           99 YAFVDAD----KDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        99 ~i~~d~~----~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|++...    ..+...+++++.++|+|||.+++..
T Consensus       117 ~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  152 (260)
T 2avn_A          117 AVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV  152 (260)
T ss_dssp             EEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEe
Confidence            9998642    2346788999999999999999853

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.36  E-value=1.1e-11  Score=98.34  Aligned_cols=106  Identities=17%  Similarity=0.115  Sum_probs=84.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..+..+|||||||+|..+..+++..| +.+++..|. |+.++.++++++..+ .++++++.+|.++.         ....
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~p-~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~---------~~~~  244 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLYP-GCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKD---------PLPE  244 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHCS-SCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTS---------CCCC
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhCC-CceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccC---------CCCC
Confidence            45668999999999999999999998 889999997 889999998876544 57899999998642         1356


Q ss_pred             eeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803           97 FDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLWG  134 (187)
Q Consensus        97 ~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      +|++++..-     .+....+++++.+.|+|||.+++.+....
T Consensus       245 ~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~  287 (353)
T 4a6d_A          245 ADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLD  287 (353)
T ss_dssp             CSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCC
T ss_pred             ceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeC
Confidence            899988642     22345679999999999998888776643

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.36  E-value=1.9e-13  Score=104.24  Aligned_cols=110  Identities=22%  Similarity=0.099  Sum_probs=76.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC---------------------------
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---------------------------   70 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---------------------------   70 (187)
                      .++.+|||||||+|..+..++...  ..+|+++|+|+.+++.|+++++.....                           
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~--~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhh--hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            356789999999997766555431  247999999999999999987653210                           


Q ss_pred             -CcEE-EEEcchHHHHHHHhhcccCCCceeEEEEeCC-------CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           71 -HKIN-FIESEALSVLDQLLKYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        71 -~~~~-~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                       .++. ++++|+.+..+ +..  ...++||+|++...       .+.+...++++.++|||||.+++.+..
T Consensus       132 ~~~i~~~~~~D~~~~~~-~~~--~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~  199 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNP-LAP--AVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL  199 (263)
T ss_dssp             HHHEEEEEECCTTSSST-TTT--CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred             HhhhheEEeccccCCCC-CCc--cccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence             1233 78888765211 000  01368999998742       134467889999999999999997644

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.36  E-value=4.4e-12  Score=103.37  Aligned_cols=115  Identities=12%  Similarity=0.146  Sum_probs=87.5

Q ss_pred             HHHHHHHHHHH---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            7 HGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         7 ~~~ll~~l~~~---~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      ...++..++..   .++.+|||+|||+|..++.++..   ..+|+++|+++++++.|++|++.+++. +++++++|+.+.
T Consensus       271 ~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~~d~~~~  346 (433)
T 1uwv_A          271 NQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYHENLEED  346 (433)
T ss_dssp             HHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCTTSC
T ss_pred             HHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEECCHHHH
Confidence            34444544443   35679999999999999999986   579999999999999999999988876 699999999774


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++.+.   ...++||+|++|.........++.+. .++|++++.++
T Consensus       347 l~~~~---~~~~~fD~Vv~dPPr~g~~~~~~~l~-~~~p~~ivyvs  388 (433)
T 1uwv_A          347 VTKQP---WAKNGFDKVLLDPARAGAAGVMQQII-KLEPIRIVYVS  388 (433)
T ss_dssp             CSSSG---GGTTCCSEEEECCCTTCCHHHHHHHH-HHCCSEEEEEE
T ss_pred             hhhhh---hhcCCCCEEEECCCCccHHHHHHHHH-hcCCCeEEEEE
Confidence            33210   01358999999976655556655554 47898888774

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.35  E-value=3.9e-12  Score=96.70  Aligned_cols=108  Identities=17%  Similarity=0.117  Sum_probs=79.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhh-------CCC----CCEEEEEeCCc--------------chHHHHHHHHHhcC-----
Q 029803           19 NAKKTIEIGVFTGYSLLLTALT-------IPE----DGQITAIDVNR--------------ETYEIGLPIIKKAG-----   68 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~-------~~~----~~~v~~iD~~~--------------~~~~~a~~~~~~~~-----   68 (187)
                      ++.+|||||+|+|++++.++..       .|.    ..+++++|..|              +..+.+++.++.+.     
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4578999999999999987765       342    25899999887              44456777776521     


Q ss_pred             -----CC---CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc--c----cHHHHHHHHhccCCCeEEEE
Q 029803           69 -----VD---HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--N----YCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        69 -----~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~--~----~~~~~~~~~~~L~~gG~lv~  128 (187)
                           +.   .+++++.+|+.+.++.+...  ...+||+||+|+..+  +    ...+++.+.++|+|||+++.
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~--~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t  211 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDS--LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT  211 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGG--GTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccc--cCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence                 11   35789999999987764110  013799999997322  2    57799999999999999986

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.34  E-value=5.9e-12  Score=97.21  Aligned_cols=92  Identities=12%  Similarity=0.059  Sum_probs=71.9

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      .+.....+...+...++.+|||||||+|..+..++..   ..+|+++|+++.+++.+++++...+..++++++++|+.+.
T Consensus        13 d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~   89 (285)
T 1zq9_A           13 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT   89 (285)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc
Confidence            3444444444445567789999999999999999987   4599999999999999999987766656799999998753


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCc
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKD  107 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~  107 (187)
                        .       ..+||+|+++....
T Consensus        90 --~-------~~~fD~vv~nlpy~  104 (285)
T 1zq9_A           90 --D-------LPFFDTCVANLPYQ  104 (285)
T ss_dssp             --C-------CCCCSEEEEECCGG
T ss_pred             --c-------chhhcEEEEecCcc
Confidence              1       25799999976443

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.33  E-value=1.8e-12  Score=100.02  Aligned_cols=110  Identities=15%  Similarity=0.028  Sum_probs=74.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC-----------------CC-----------
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-----------------VD-----------   70 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-----------------~~-----------   70 (187)
                      ++.+|||||||+|..+..++.. + ..+|+++|+++.+++.|++++....                 ..           
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~-~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACS-H-FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  148 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGG-G-CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhcc-C-CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHH
Confidence            6789999999999954433332 2 5699999999999999998764311                 00           


Q ss_pred             -CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-------cccHHHHHHHHhccCCCeEEEEeCC
Q 029803           71 -HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        71 -~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                       ..++++.+|+.+.++ +.......++||+|++....       ......++++.++|||||++++.+.
T Consensus       149 ~~~~~~~~~D~~~~~~-~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~  216 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQP-LGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA  216 (289)
T ss_dssp             HHEEEEECCCTTSSST-TCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhhceEEecccCCCCC-ccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence             014566777754221 00000123569999987532       2466789999999999999998653

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.33  E-value=5.2e-12  Score=92.12  Aligned_cols=99  Identities=16%  Similarity=0.196  Sum_probs=70.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH------------
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL------------   84 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~------------   84 (187)
                      .++.+|||+|||+|..+..+++.+++ +++|+++|+++..           .. .+++++++|+.+..            
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC--------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhcccccccc
Confidence            46679999999999999999998763 5899999999842           12 35888888875431            


Q ss_pred             -------HHHhhcccCCCceeEEEEeCCCcc-------c-------HHHHHHHHhccCCCeEEEEe
Q 029803           85 -------DQLLKYSENEGSFDYAFVDADKDN-------Y-------CNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        85 -------~~~~~~~~~~~~~D~i~~d~~~~~-------~-------~~~~~~~~~~L~~gG~lv~~  129 (187)
                             ..+... ...++||+|+++.....       .       ...++.+.++|+|||.+++.
T Consensus        89 ~~~~~~~~~~~~~-~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~  153 (201)
T 2plw_A           89 MNNNSVDYKLKEI-LQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVK  153 (201)
T ss_dssp             ---CHHHHHHHHH-HTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccchhhHHHHHhh-cCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence                   000000 02468999999853221       1       13677888999999999984

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.33  E-value=1.6e-12  Score=105.28  Aligned_cols=100  Identities=15%  Similarity=0.165  Sum_probs=74.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|..+..++..   +.+++++|+++.+++.++++    +......++..+..+.++..      .++|
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~------~~~f  172 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT------EGPA  172 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH------HCCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC------CCCE
Confidence            36779999999999999999875   56999999999999988876    33322222222222322221      3799


Q ss_pred             eEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeC
Q 029803           98 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        98 D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      |+|++...   ..+...+++++.++|+|||++++..
T Consensus       173 D~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~  208 (416)
T 4e2x_A          173 NVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFED  208 (416)
T ss_dssp             EEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEe
Confidence            99998753   3456789999999999999999964

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=99.32  E-value=1.6e-11  Score=97.43  Aligned_cols=148  Identities=15%  Similarity=0.078  Sum_probs=105.3

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC---C----CCcEEEEEcchHHHHHHHhh
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---V----DHKINFIESEALSVLDQLLK   89 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~----~~~~~~~~~d~~~~~~~~~~   89 (187)
                      ..+|++||-||.|.|..+.++++. + ..+|+.+|++|..++.+++.+....   .    .++++++.+|+.+++....+
T Consensus       203 ~~~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~  280 (381)
T 3c6k_A          203 DYTGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK  280 (381)
T ss_dssp             CCTTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH
T ss_pred             cCCCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh
Confidence            346899999999999999999885 4 4799999999999999999864311   1    24689999999998876433


Q ss_pred             cccCCCceeEEEEeCCC-------------cccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHH
Q 029803           90 YSENEGSFDYAFVDADK-------------DNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAI  156 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~-------------~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (187)
                      .   .++||+|++|...             ....++++.+.+.|+|||+++.......                 ....+
T Consensus       281 ~---~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~-----------------~~~~~  340 (381)
T 3c6k_A          281 E---GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVN-----------------LTEAL  340 (381)
T ss_dssp             H---TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETT-----------------CHHHH
T ss_pred             c---cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCc-----------------chhHH
Confidence            2   4689999999521             0124678999999999999997522110                 12235


Q ss_pred             HHHHHHhhcC-CCeEE----Eeee---cCCceEEEEEc
Q 029803          157 LDLNRSLADD-PRVQL----SHVA---LGDGITICRRI  186 (187)
Q Consensus       157 ~~~~~~l~~~-~~~~~----~~lp---~~~G~~~~~~~  186 (187)
                      ..+.+.++.. +.+..    ..+|   -.+|+.++.|+
T Consensus       341 ~~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~aSK~  378 (381)
T 3c6k_A          341 SLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTVWKK  378 (381)
T ss_dssp             HHHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEEEEC
T ss_pred             HHHHHHHHHhCCcceEeeEEEEecCCCCceeeeEEECC
Confidence            6666666654 33332    2234   24789999886

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.32  E-value=3.2e-12  Score=101.15  Aligned_cols=115  Identities=17%  Similarity=0.137  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHH----HcCCCEEEEEcccccHHHHHHHhhCCCC----CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEE
Q 029803            5 TIHGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPED----GQITAIDVNRETYEIGLPIIKKAGVDHKINFI   76 (187)
Q Consensus         5 ~~~~~ll~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~~~----~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~   76 (187)
                      +.+..++..++.    ..++.+|||+|||+|..+..+++.++..    .+++++|+++.+++.|+.++...+.  +++++
T Consensus       112 ~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~  189 (344)
T 2f8l_A          112 DSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLL  189 (344)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEE
T ss_pred             HHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEE
Confidence            445555555543    2355799999999999999998876522    7899999999999999999987776  48899


Q ss_pred             EcchHHHHHHHhhcccCCCceeEEEEeCCCcc---------------------cHHHHHHHHhccCCCeEEEEe
Q 029803           77 ESEALSVLDQLLKYSENEGSFDYAFVDADKDN---------------------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        77 ~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~---------------------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++|+....        ..++||+|++++....                     ...+++.+.+.|+|||.+++.
T Consensus       190 ~~D~l~~~--------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v  255 (344)
T 2f8l_A          190 HQDGLANL--------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFL  255 (344)
T ss_dssp             ESCTTSCC--------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ECCCCCcc--------ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEE
Confidence            99986521        1468999999864111                     125789999999999988773

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.31  E-value=9.4e-12  Score=90.63  Aligned_cols=105  Identities=22%  Similarity=0.246  Sum_probs=72.9

Q ss_pred             HHHHHHHH---HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--
Q 029803            9 QLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--   83 (187)
Q Consensus         9 ~ll~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--   83 (187)
                      ++++.+.+   ..++.+|||+|||+|.++..+++.   .++|+++|+++..           .. .+++++++|+.+.  
T Consensus        12 KL~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~   76 (191)
T 3dou_A           12 KLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EI-AGVRFIRCDIFKETI   76 (191)
T ss_dssp             HHHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSH
T ss_pred             HHHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cC-CCeEEEEccccCHHH
Confidence            44444433   356789999999999999999886   6899999999852           12 3689999997542  


Q ss_pred             HH---HHhhcccCCCceeEEEEeCCCcc--------------cHHHHHHHHhccCCCeEEEEe
Q 029803           84 LD---QLLKYSENEGSFDYAFVDADKDN--------------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        84 ~~---~~~~~~~~~~~~D~i~~d~~~~~--------------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..   ..... ...++||+|++|..+..              ....++.+.++|+|||.+++.
T Consensus        77 ~~~~~~~~~~-~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k  138 (191)
T 3dou_A           77 FDDIDRALRE-EGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK  138 (191)
T ss_dssp             HHHHHHHHHH-HTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHhhc-ccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            11   11100 00148999999864311              134577778999999999975

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.31  E-value=3.2e-12  Score=94.72  Aligned_cols=103  Identities=19%  Similarity=0.230  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      ...+..+....++.+|||+|||+|..+..++..       +++|+++.+++.++++        +++++.+|+.+. + +
T Consensus        36 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~-~-~   98 (219)
T 1vlm_A           36 LSELQAVKCLLPEGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR--------GVFVLKGTAENL-P-L   98 (219)
T ss_dssp             HHHHHHHHHHCCSSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT--------TCEEEECBTTBC-C-S
T ss_pred             HHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc--------CCEEEEcccccC-C-C
Confidence            344555666667899999999999998877642       9999999999998876        478888887542 1 1


Q ss_pred             hhcccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           88 LKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                           ..++||+|++...   ......+++++.++|+|||.+++....
T Consensus        99 -----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A           99 -----KDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             -----CTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -----CCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeC
Confidence                 2468999998753   345678899999999999999986543

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.31  E-value=7.1e-13  Score=99.48  Aligned_cols=98  Identities=15%  Similarity=0.138  Sum_probs=67.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-cchHHHH-HHHhhcccCCCc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVL-DQLLKYSENEGS   96 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~-~~~~~~~~~~~~   96 (187)
                      ++++|||||||+|..+..+++. . ..+|+++|+++++++.++++..      ++.... .+..... ..+     ....
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~-g-~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~~~~~~~~-----~~~~  103 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN-G-AKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFRNAVLADF-----EQGR  103 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGGGCCGGGC-----CSCC
T ss_pred             CCCEEEEEccCCCHHHHHHHhc-C-CCEEEEEcCCHHHHHHHHHhCc------cccccccceEEEeCHhHc-----CcCC
Confidence            4679999999999999999986 2 3599999999999998776532      222221 1221110 111     1123


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ||.+.+|........+++++.++|+|||.+++.
T Consensus       104 ~d~~~~D~v~~~l~~~l~~i~rvLkpgG~lv~~  136 (232)
T 3opn_A          104 PSFTSIDVSFISLDLILPPLYEILEKNGEVAAL  136 (232)
T ss_dssp             CSEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             CCEEEEEEEhhhHHHHHHHHHHhccCCCEEEEE
Confidence            677767665555678899999999999999883

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.30  E-value=7.3e-13  Score=102.20  Aligned_cols=99  Identities=21%  Similarity=0.107  Sum_probs=71.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEE-EcchHHHHHHHhhcccCCCce
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      ++.+|||||||+|.++..++.. + ..+|+++|+++.|++.+.++      ..++... ..++......-    ....+|
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~-g-a~~V~aVDvs~~mL~~a~r~------~~rv~~~~~~ni~~l~~~~----l~~~~f  152 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN-G-AKLVYAVDVGTNQLVWKLRQ------DDRVRSMEQYNFRYAEPVD----FTEGLP  152 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-T-CSEEEEECSSSSCSCHHHHT------CTTEEEECSCCGGGCCGGG----CTTCCC
T ss_pred             cccEEEecCCCccHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHh------CcccceecccCceecchhh----CCCCCC
Confidence            5679999999999999988875 2 46999999999999875432      1234332 23332211110    012459


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++|.........+.++.++|+|||.+++-
T Consensus       153 D~v~~d~sf~sl~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          153 SFASIDVSFISLNLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             SEEEECCSSSCGGGTHHHHHHHSCTTCEEEEE
T ss_pred             CEEEEEeeHhhHHHHHHHHHHHcCcCCEEEEE
Confidence            99999987767788999999999999999874

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.28  E-value=3.1e-12  Score=97.39  Aligned_cols=91  Identities=18%  Similarity=0.184  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc-------chHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR-------ETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~-------~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      ..++...+...++.+|||+|||+|..++.++..   +++|+++|+++       ++++.++++++.+++.++++++++|+
T Consensus        72 ~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~  148 (258)
T 2r6z_A           72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA  148 (258)
T ss_dssp             -CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH
T ss_pred             hHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH
Confidence            344555555556789999999999999999985   57999999999       99999999988777766799999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeC
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDA  104 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~  104 (187)
                      .+.++.+.+.   .++||+|++|.
T Consensus       149 ~~~l~~~~~~---~~~fD~V~~dP  169 (258)
T 2r6z_A          149 AEQMPALVKT---QGKPDIVYLDP  169 (258)
T ss_dssp             HHHHHHHHHH---HCCCSEEEECC
T ss_pred             HHHHHhhhcc---CCCccEEEECC
Confidence            9877655210   15899999986

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.28  E-value=4.1e-11  Score=86.92  Aligned_cols=100  Identities=11%  Similarity=0.151  Sum_probs=71.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCC--------CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEE-EcchHHHH-H-H
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPED--------GQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVL-D-Q   86 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~--------~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~-~-~   86 (187)
                      .++.+|||+|||+|..+..+++..+..        .+|+++|+++..           .. .+++++ .+|..+.. . .
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHH
Confidence            467899999999999999999987632        799999999842           12 357888 88865421 1 1


Q ss_pred             HhhcccCCCceeEEEEeCCCc-------cc-------HHHHHHHHhccCCCeEEEEeC
Q 029803           87 LLKYSENEGSFDYAFVDADKD-------NY-------CNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~~~-------~~-------~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +... ...++||+|+++....       ..       ...++++.++|+|||.+++..
T Consensus        89 ~~~~-~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           89 ILEV-LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             HHHH-SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHh-cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            1000 0135899999975321       11       367888999999999999864

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.28  E-value=1.4e-11  Score=92.90  Aligned_cols=145  Identities=10%  Similarity=-0.012  Sum_probs=102.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      ..|.+|||||||+|-.++.++...+ ..+|+++|+++.+++.+++++..+++.  .++.+.|.....        ..++|
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p-~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~--------p~~~~  199 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPA-ETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDR--------LDEPA  199 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCT-TCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSC--------CCSCC
T ss_pred             CCCceeeeeccCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccC--------CCCCc
Confidence            5689999999999999998887655 899999999999999999999998875  778888875432        25789


Q ss_pred             eEEEEeCCCcc-----cHHHHHHHHhccCCCeEEEEeCCC-CCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEE
Q 029803           98 DYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTL-WGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL  171 (187)
Q Consensus        98 D~i~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  171 (187)
                      |++++.-..+.     ....+ .+++.|+++|++|--+.- ..|           +..+ +.....+.++....+.++..
T Consensus       200 DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~G-----------rs~g-m~~~Y~~~~e~~~~~~g~~~  266 (281)
T 3lcv_B          200 DVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQ-----------RSKG-MFQNYSQSFESQARERSCRI  266 (281)
T ss_dssp             SEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEECC------------------C-HHHHHHHHHHHHHHHHTCCE
T ss_pred             chHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEeccchhhcC-----------CCcc-hhhHHHHHHHHHHHhcCCce
Confidence            99988532222     12344 688999999999875541 111           1112 44445555555554555566


Q ss_pred             EeeecCCceEEEEEc
Q 029803          172 SHVALGDGITICRRI  186 (187)
Q Consensus       172 ~~lp~~~G~~~~~~~  186 (187)
                      ..+-+++-+.++.+|
T Consensus       267 ~~~~~~nEl~y~i~k  281 (281)
T 3lcv_B          267 QRLEIGNELIYVIQK  281 (281)
T ss_dssp             EEEEETTEEEEEEC-
T ss_pred             eeeeecCeeEEEecC
Confidence            777788877776553

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.27  E-value=3.7e-12  Score=94.37  Aligned_cols=97  Identities=13%  Similarity=0.093  Sum_probs=76.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||+|||+|..+..++..   +.+++++|+++.+++.+++++        .+++.+|+.+....     ...++|
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~-----~~~~~f   94 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN---GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMP-----YEEEQF   94 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT---TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCC-----SCTTCE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCC-----CCCCcc
Confidence            46789999999999999999886   379999999999999888653        26788887642111     124689


Q ss_pred             eEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeC
Q 029803           98 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        98 D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      |+|++...   ..+...+++++.++|+|||.+++..
T Consensus        95 D~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~  130 (230)
T 3cc8_A           95 DCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI  130 (230)
T ss_dssp             EEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEE
T ss_pred             CEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEe
Confidence            99998753   2345788999999999999999864

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.27  E-value=1e-11  Score=99.20  Aligned_cols=99  Identities=9%  Similarity=0.085  Sum_probs=77.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .+..+|||||||+|..+..+++.+| +.+++++|+ |++++.++++       .+++++.+|..+.   +      ... 
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~------p~~-  262 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYP-SINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFDG---V------PKG-  262 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTC---C------CCC-
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCC-CCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCCC---C------CCC-
Confidence            3467999999999999999999987 789999999 8887766532       4799999998752   1      123 


Q ss_pred             eEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           98 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        98 D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      |+|++....     +....+++++.+.|+|||.+++.+.....
T Consensus       263 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~  305 (368)
T 3reo_A          263 DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPP  305 (368)
T ss_dssp             SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCS
T ss_pred             CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence            999986532     23346899999999999999988776543

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=99.27  E-value=1.5e-10  Score=91.76  Aligned_cols=119  Identities=14%  Similarity=0.087  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC-----CcEEEEEcchHH
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-----HKINFIESEALS   82 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-----~~~~~~~~d~~~   82 (187)
                      ..+...++...++.+|||++++.|.=+..++...+ +++|+++|+++..+...+++++.++..     .++.+...|+..
T Consensus       137 S~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~  215 (359)
T 4fzv_A          137 SLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRK  215 (359)
T ss_dssp             GHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGG
T ss_pred             HHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhh
Confidence            34555666677888999999999999999998765 678999999999999999999987653     468899999876


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCCcc---------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDADKDN---------------------------YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~~~~---------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +...      ..+.||.|++|+..+.                           -..+++.++++|||||+||...+..
T Consensus       216 ~~~~------~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl  287 (359)
T 4fzv_A          216 WGEL------EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSL  287 (359)
T ss_dssp             HHHH------STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred             cchh------ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCC
Confidence            5433      2478999999964321                           0246777889999999999976664

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.26  E-value=4e-12  Score=100.69  Aligned_cols=105  Identities=12%  Similarity=0.078  Sum_probs=80.0

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..+++..+ +.+++++|+ +..+.  +++++..+..++++++.+|+.+   .+      + +
T Consensus       182 ~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~---~~------p-~  247 (348)
T 3lst_A          182 FPATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR---EV------P-H  247 (348)
T ss_dssp             CCSSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT---CC------C-C
T ss_pred             ccCCceEEEECCccCHHHHHHHHHCC-CCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC---CC------C-C
Confidence            34577999999999999999999987 789999999 44444  3333344556789999999862   11      3 8


Q ss_pred             eeEEEEeCCC---c--ccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           97 FDYAFVDADK---D--NYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        97 ~D~i~~d~~~---~--~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      ||+|++...-   .  ....+++++.+.|+|||.+++.+.....
T Consensus       248 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~  291 (348)
T 3lst_A          248 ADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPE  291 (348)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred             CcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence            9999987532   2  2257899999999999999997776543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.26  E-value=2.7e-11  Score=92.48  Aligned_cols=121  Identities=15%  Similarity=0.145  Sum_probs=80.4

Q ss_pred             HHHHHHHcCCCEEEEEcccc--cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803           11 MAMLLRLVNAKKTIEIGVFT--GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~--G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      +..++......+|||||||+  +..+..++....++.+|+++|.||.+++.+++++...+ ..+++++++|+.+.-..+.
T Consensus        70 v~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~  148 (277)
T 3giw_A           70 VAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILD  148 (277)
T ss_dssp             HHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHT
T ss_pred             HHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhc
Confidence            33333334557999999997  44455555544348999999999999999999886543 2479999999976421110


Q ss_pred             hcccCCCcee-----EEEEeCC---Ccc---cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           89 KYSENEGSFD-----YAFVDAD---KDN---YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        89 ~~~~~~~~~D-----~i~~d~~---~~~---~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .. ...+.||     .|++...   ...   ....++.+.+.|+|||+|++.....
T Consensus       149 ~~-~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~  203 (277)
T 3giw_A          149 AP-ELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTA  203 (277)
T ss_dssp             CH-HHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred             cc-ccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccC
Confidence            00 0013344     4555532   112   3578999999999999999976553

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.25  E-value=2.2e-11  Score=94.63  Aligned_cols=91  Identities=13%  Similarity=0.078  Sum_probs=68.3

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      .+...+.+...+...++.+|||||||+|..+..++..   ..+|+++|+++.+++.+++++...+. .+++++++|+.+.
T Consensus        27 ~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~  102 (299)
T 2h1r_A           27 NPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKT  102 (299)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSS
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhC
Confidence            3444445555555667789999999999999999875   56999999999999999999987776 4699999998653


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCc
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKD  107 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~  107 (187)
                               ..++||+|+++....
T Consensus       103 ---------~~~~~D~Vv~n~py~  117 (299)
T 2h1r_A          103 ---------VFPKFDVCTANIPYK  117 (299)
T ss_dssp             ---------CCCCCSEEEEECCGG
T ss_pred             ---------CcccCCEEEEcCCcc
Confidence                     125899999986543

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.23  E-value=4.8e-11  Score=95.13  Aligned_cols=98  Identities=9%  Similarity=0.077  Sum_probs=77.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .+..+|||||||+|..+..+++.+| +.+++++|+ |++++.+++.       .+++++.+|+.+.   +      ... 
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~~---~------p~~-  260 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYP-TIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFKE---V------PSG-  260 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTC---C------CCC-
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCC-CCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCCC---C------CCC-
Confidence            3568999999999999999999987 789999999 8877766532       4799999998752   1      123 


Q ss_pred             eEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803           98 DYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLWG  134 (187)
Q Consensus        98 D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      |+|++....     +....+++++.+.|+|||.+++.+....
T Consensus       261 D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~  302 (364)
T 3p9c_A          261 DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILP  302 (364)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred             CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence            999986432     3345789999999999999998877654

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.22  E-value=1.2e-11  Score=94.87  Aligned_cols=105  Identities=21%  Similarity=0.227  Sum_probs=75.0

Q ss_pred             CCCEEEEEcccccH----HHHHHHhhCCC---CCEEEEEeCCcchHHHHHHHHHh-----------------------cC
Q 029803           19 NAKKTIEIGVFTGY----SLLLTALTIPE---DGQITAIDVNRETYEIGLPIIKK-----------------------AG   68 (187)
Q Consensus        19 ~~~~vLeiG~g~G~----~~~~la~~~~~---~~~v~~iD~~~~~~~~a~~~~~~-----------------------~~   68 (187)
                      ++.+|+|+|||+|.    .+..++..++.   +.+|+++|+|+++++.|++++..                       .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    45556655432   35999999999999999987410                       00


Q ss_pred             -------CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEe
Q 029803           69 -------VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        69 -------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                             +..++++.++|..+.  .+    ...++||+|+|...     .+.....++.+.+.|+|||++++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~--~~----~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEK--QY----NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCS--SC----CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCC--CC----CcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                   013588999998652  11    01368999999642     223367899999999999999983

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.22  E-value=2.2e-11  Score=97.99  Aligned_cols=117  Identities=12%  Similarity=0.041  Sum_probs=84.9

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCC---C----------------------------------CCE
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP---E----------------------------------DGQ   46 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~---~----------------------------------~~~   46 (187)
                      .+..+..+-.+....++..+||.+||+|..++.+|....   +                                  ..+
T Consensus       186 ~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  265 (393)
T 3k0b_A          186 KETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN  265 (393)
T ss_dssp             CHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence            445555555555566778999999999999988876432   1                                  156


Q ss_pred             EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-------cccHHHHHHHHhc
Q 029803           47 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMKL  119 (187)
Q Consensus        47 v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-------~~~~~~~~~~~~~  119 (187)
                      |+++|+++.+++.|++|+..+++.+++++.++|+.+..        ...+||+|+++...       .....+++.+.+.
T Consensus       266 V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~--------~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~  337 (393)
T 3k0b_A          266 IIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQ--------TEDEYGVVVANPPYGERLEDEEAVRQLYREMGIV  337 (393)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCC--------CCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCC--------CCCCCCEEEECCCCccccCCchhHHHHHHHHHHH
Confidence            99999999999999999999999888999999997642        13589999999643       1223345544444


Q ss_pred             cCC--CeEEEE
Q 029803          120 LKV--GGIAVY  128 (187)
Q Consensus       120 L~~--gG~lv~  128 (187)
                      |++  ||.+.+
T Consensus       338 lk~~~g~~~~i  348 (393)
T 3k0b_A          338 YKRMPTWSVYV  348 (393)
T ss_dssp             HHTCTTCEEEE
T ss_pred             HhcCCCCEEEE
Confidence            444  665544

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.21  E-value=1.3e-10  Score=89.96  Aligned_cols=100  Identities=16%  Similarity=0.110  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      +.+.+-+...+...++.+|||||||+|..+..++..   ..+|+++|+++++++.+++++..   ..+++++++|+.+.-
T Consensus        36 ~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~~---~~~v~vi~gD~l~~~  109 (295)
T 3gru_A           36 KNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKEL---YNNIEIIWGDALKVD  109 (295)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHHH---CSSEEEEESCTTTSC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhcc---CCCeEEEECchhhCC
Confidence            334444444445567789999999999999999986   46999999999999999999873   246999999997631


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHH
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  117 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~  117 (187)
                        +     ...+||.|+.+.........+..++
T Consensus       110 --~-----~~~~fD~Iv~NlPy~is~pil~~lL  135 (295)
T 3gru_A          110 --L-----NKLDFNKVVANLPYQISSPITFKLI  135 (295)
T ss_dssp             --G-----GGSCCSEEEEECCGGGHHHHHHHHH
T ss_pred             --c-----ccCCccEEEEeCcccccHHHHHHHH
Confidence              1     1247999998864433333333333

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.20  E-value=1.2e-11  Score=91.15  Aligned_cols=95  Identities=14%  Similarity=0.094  Sum_probs=72.3

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      .++..+....++.+|||||||+|..+..++      .+++++|+++.                ++++..+|+.+. +   
T Consensus        57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~----------------~~~~~~~d~~~~-~---  110 (215)
T 2zfu_A           57 RIARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL----------------DPRVTVCDMAQV-P---  110 (215)
T ss_dssp             HHHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS----------------STTEEESCTTSC-S---
T ss_pred             HHHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC----------------CceEEEeccccC-C---
Confidence            456666555677899999999999887663      58999999987                356778887652 1   


Q ss_pred             hcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           89 KYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                         ...++||+|++...  ......+++++.++|+|||.+++.+..
T Consensus       111 ---~~~~~fD~v~~~~~l~~~~~~~~l~~~~~~L~~gG~l~i~~~~  153 (215)
T 2zfu_A          111 ---LEDESVDVAVFCLSLMGTNIRDFLEEANRVLKPGGLLKVAEVS  153 (215)
T ss_dssp             ---CCTTCEEEEEEESCCCSSCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             ---CCCCCEeEEEEehhccccCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence               12468999998743  355678899999999999999986543

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.19  E-value=5.9e-11  Score=95.16  Aligned_cols=117  Identities=8%  Similarity=-0.005  Sum_probs=86.9

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCC-------------------------------------CCE
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-------------------------------------DGQ   46 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~-------------------------------------~~~   46 (187)
                      .+..+..|-.+....+...++|.+||+|..++..+.....                                     ..+
T Consensus       179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  258 (384)
T 3ldg_A          179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD  258 (384)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence            4455555555556667789999999999999888754321                                     156


Q ss_pred             EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-------cccHHHHHHHHhc
Q 029803           47 ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHERLMKL  119 (187)
Q Consensus        47 v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-------~~~~~~~~~~~~~  119 (187)
                      ++++|+++.+++.|++|+..+++.+++++.++|+.+..        ...+||+|+++...       .....+++.+.+.
T Consensus       259 v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~--------~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~  330 (384)
T 3ldg_A          259 ISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFK--------TNKINGVLISNPPYGERLLDDKAVDILYNEMGET  330 (384)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCC--------CCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCC--------ccCCcCEEEECCchhhccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999888999999997642        13589999999642       2334556656556


Q ss_pred             cCC--CeEEEE
Q 029803          120 LKV--GGIAVY  128 (187)
Q Consensus       120 L~~--gG~lv~  128 (187)
                      |++  |+.+.+
T Consensus       331 lk~~~g~~~~i  341 (384)
T 3ldg_A          331 FAPLKTWSQFI  341 (384)
T ss_dssp             HTTCTTSEEEE
T ss_pred             HhhCCCcEEEE
Confidence            655  665544

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.19  E-value=3e-11  Score=97.26  Aligned_cols=77  Identities=18%  Similarity=0.138  Sum_probs=66.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc--CCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ++.+|||+|||+|..++.++..   +.+|+++|+++.+++.|++|++.+  ++ ++++++++|+.+.++...     .++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~-----~~~  163 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIK-----TFH  163 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHH-----HHC
T ss_pred             CCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhcc-----CCC
Confidence            3789999999999999999875   569999999999999999999987  77 579999999988655431     258


Q ss_pred             eeEEEEeC
Q 029803           97 FDYAFVDA  104 (187)
Q Consensus        97 ~D~i~~d~  104 (187)
                      ||+||+|.
T Consensus       164 fDvV~lDP  171 (410)
T 3ll7_A          164 PDYIYVDP  171 (410)
T ss_dssp             CSEEEECC
T ss_pred             ceEEEECC
Confidence            99999995

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.19  E-value=2.9e-11  Score=97.04  Aligned_cols=116  Identities=16%  Similarity=0.115  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCC-------------------------------------CCCEE
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP-------------------------------------EDGQI   47 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~-------------------------------------~~~~v   47 (187)
                      +..+..|-.+....+...+||++||+|..++.++....                                     ...+|
T Consensus       181 e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V  260 (385)
T 3ldu_A          181 ETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKI  260 (385)
T ss_dssp             HHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCE
T ss_pred             HHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceE
Confidence            34444444444556678999999999999998876532                                     12579


Q ss_pred             EEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc-------ccHHHHHHHHhcc
Q 029803           48 TAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-------NYCNYHERLMKLL  120 (187)
Q Consensus        48 ~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~-------~~~~~~~~~~~~L  120 (187)
                      +++|+++.+++.|++|+..+++.+++++.++|+.+...        ..+||+|+++....       ....+++.+.+.|
T Consensus       261 ~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~--------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~l  332 (385)
T 3ldu_A          261 YGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKS--------EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAF  332 (385)
T ss_dssp             EEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCC--------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCc--------CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999988789999999976421        36899999986531       2233455554455


Q ss_pred             CC--CeEEEE
Q 029803          121 KV--GGIAVY  128 (187)
Q Consensus       121 ~~--gG~lv~  128 (187)
                      ++  |+.+.+
T Consensus       333 k~~~g~~~~i  342 (385)
T 3ldu_A          333 RKLKNWSYYL  342 (385)
T ss_dssp             HTSBSCEEEE
T ss_pred             hhCCCCEEEE
Confidence            54  555443

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.18  E-value=2.7e-11  Score=98.02  Aligned_cols=106  Identities=16%  Similarity=0.176  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      +...+++..++...++.+|||+|||+|..+..+++...+..+++++|+++.+++.|          .+++++++|+.+..
T Consensus        25 ~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~~~~   94 (421)
T 2ih2_A           25 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFLLWE   94 (421)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGGGCC
T ss_pred             HHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChhhcC
Confidence            34445555444434567999999999999999998763368999999999998766          36899999987631


Q ss_pred             HHHhhcccCCCceeEEEEeCCC--------------c------------------ccHHHHHHHHhccCCCeEEEE
Q 029803           85 DQLLKYSENEGSFDYAFVDADK--------------D------------------NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~--------------~------------------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                              ..++||+|++++..              .                  .+..+++.+.++|+|||.+++
T Consensus        95 --------~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~  162 (421)
T 2ih2_A           95 --------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  162 (421)
T ss_dssp             --------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             --------ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEE
Confidence                    13689999996321              0                  112568888999999998877

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.17  E-value=1.9e-10  Score=89.32  Aligned_cols=86  Identities=16%  Similarity=0.102  Sum_probs=69.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..+++.++ +++|+++|.++++++.|+++++.++  .+++++++|+.+....+...  ...+
T Consensus        24 ~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~l~~~l~~~--g~~~   98 (301)
T 1m6y_A           24 PEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTL--GIEK   98 (301)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHT--TCSC
T ss_pred             CCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHHHHHHHHhc--CCCC
Confidence            45678999999999999999999887 7899999999999999999998776  57999999987643222110  1258


Q ss_pred             eeEEEEeCCCc
Q 029803           97 FDYAFVDADKD  107 (187)
Q Consensus        97 ~D~i~~d~~~~  107 (187)
                      ||.|++|....
T Consensus        99 ~D~Vl~D~gvS  109 (301)
T 1m6y_A           99 VDGILMDLGVS  109 (301)
T ss_dssp             EEEEEEECSCC
T ss_pred             CCEEEEcCccc
Confidence            99999997543

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.16  E-value=2.4e-11  Score=99.27  Aligned_cols=117  Identities=15%  Similarity=0.105  Sum_probs=88.8

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCC------------CCCEEEEEeCCcchHHHHHHHHHhcCCCC
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIP------------EDGQITAIDVNRETYEIGLPIIKKAGVDH   71 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~------------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~   71 (187)
                      ++.+.+++..++...++.+|+|.|||+|...+.+++.+.            ...+++++|+++.+++.|+.++...+...
T Consensus       156 P~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~  235 (445)
T 2okc_A          156 PRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT  235 (445)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             cHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence            345555666666555667999999999999998887541            13689999999999999999998888753


Q ss_pred             -cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcc--------------------cHHHHHHHHhccCCCeEEEE
Q 029803           72 -KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--------------------YCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        72 -~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~--------------------~~~~~~~~~~~L~~gG~lv~  128 (187)
                       ..++.++|+....        ...+||+|+.++....                    ...+++.+.++|+|||.+++
T Consensus       236 ~~~~i~~gD~l~~~--------~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~  305 (445)
T 2okc_A          236 DRSPIVCEDSLEKE--------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  305 (445)
T ss_dssp             SCCSEEECCTTTSC--------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCCEeeCCCCCCc--------ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEE
Confidence             5788999986531        1358999998852110                    13689999999999998866

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.16  E-value=5.9e-10  Score=83.30  Aligned_cols=145  Identities=12%  Similarity=0.059  Sum_probs=97.0

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ....+|.+|||||||+|-.++.+.   + ..+++++|+++.+++.+++++...+  ....+.++|.....        ..
T Consensus       101 ~~~~~p~~VLDlGCG~gpLal~~~---~-~~~y~a~DId~~~i~~ar~~~~~~g--~~~~~~v~D~~~~~--------~~  166 (253)
T 3frh_A          101 FSAETPRRVLDIACGLNPLALYER---G-IASVWGCDIHQGLGDVITPFAREKD--WDFTFALQDVLCAP--------PA  166 (253)
T ss_dssp             TSSCCCSEEEEETCTTTHHHHHHT---T-CSEEEEEESBHHHHHHHHHHHHHTT--CEEEEEECCTTTSC--------CC
T ss_pred             hcCCCCCeEEEecCCccHHHHHhc---c-CCeEEEEeCCHHHHHHHHHHHHhcC--CCceEEEeecccCC--------CC
Confidence            334578999999999999988776   3 7899999999999999999988777  35888888876431        24


Q ss_pred             CceeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCC-CCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCC
Q 029803           95 GSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL-WGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPR  168 (187)
Q Consensus        95 ~~~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (187)
                      ++||+|++--..     ......+ .++..|++++++|.-++- ..|.-.           + +...-+++++.......
T Consensus       167 ~~~DvvLllk~lh~LE~q~~~~~~-~ll~aL~~~~vvVsfPtksl~Gr~~-----------g-m~~~Y~~~~e~~~~~~~  233 (253)
T 3frh_A          167 EAGDLALIFKLLPLLEREQAGSAM-ALLQSLNTPRMAVSFPTRSLGGRGK-----------G-MEANYAAWFEGGLPAEF  233 (253)
T ss_dssp             CBCSEEEEESCHHHHHHHSTTHHH-HHHHHCBCSEEEEEEECC-----------------------CHHHHHHHHSCTTE
T ss_pred             CCcchHHHHHHHHHhhhhchhhHH-HHHHHhcCCCEEEEcChHHhcCCCc-----------c-hhhHHHHHHHHHhhccc
Confidence            699999876221     1112233 677899999998875422 122110           1 22223444444445555


Q ss_pred             eEEEeeecCCceEEEEEc
Q 029803          169 VQLSHVALGDGITICRRI  186 (187)
Q Consensus       169 ~~~~~lp~~~G~~~~~~~  186 (187)
                      +..-.+-+++-+....+|
T Consensus       234 ~~~~~~~~~nEl~~~i~~  251 (253)
T 3frh_A          234 EIEDKKTIGTELIYLIKK  251 (253)
T ss_dssp             EEEEEEEETTEEEEEEEE
T ss_pred             hhhhheecCceEEEEEec
Confidence            666667788888777665

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.16  E-value=3e-10  Score=95.48  Aligned_cols=102  Identities=22%  Similarity=0.223  Sum_probs=78.2

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..+|.+|||||||.|..+..+|+.   +++|++||.++.+++.|+.+....+.. ++++.++++.+.....     ..++
T Consensus        64 ~~~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~-~~~~~~~~~~~~~~~~-----~~~~  134 (569)
T 4azs_A           64 LGRPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDF-AAEFRVGRIEEVIAAL-----EEGE  134 (569)
T ss_dssp             HTSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTS-EEEEEECCHHHHHHHC-----CTTS
T ss_pred             cCCCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCC-ceEEEECCHHHHhhhc-----cCCC
Confidence            457889999999999999999986   689999999999999999998877643 5999999998876543     2568


Q ss_pred             eeEEEEeCCCcccH-----HHHHHHHhccCCCeEEE
Q 029803           97 FDYAFVDADKDNYC-----NYHERLMKLLKVGGIAV  127 (187)
Q Consensus        97 ~D~i~~d~~~~~~~-----~~~~~~~~~L~~gG~lv  127 (187)
                      ||+|++-.--++..     ..+..+.+.|++++...
T Consensus       135 fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~  170 (569)
T 4azs_A          135 FDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAV  170 (569)
T ss_dssp             CSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEE
T ss_pred             ccEEEECcchhcCCCHHHHHHHHHHHHHhcccccee
Confidence            99999865333322     22334556677766443

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.14  E-value=3.5e-11  Score=96.05  Aligned_cols=97  Identities=14%  Similarity=0.153  Sum_probs=77.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|..+..+++..+ ..+++++|+ +.+++.+++.       .+++++.+|+.+.   +       ..|
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~-------~~~  268 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFAS---V-------PQG  268 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTTC---C-------CCE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCC-CCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCcccC---C-------CCC
Confidence            3568999999999999999999987 789999999 8888776641       3599999998651   1       239


Q ss_pred             eEEEEeCCC---cc--cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           98 DYAFVDADK---DN--YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        98 D~i~~d~~~---~~--~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      |+|++...-   ..  ...+++++.+.|+|||.+++.+...
T Consensus       269 D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~  309 (372)
T 1fp1_D          269 DAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL  309 (372)
T ss_dssp             EEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             CEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence            999987532   22  2378999999999999999876554

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.14  E-value=1.8e-11  Score=93.03  Aligned_cols=103  Identities=9%  Similarity=0.139  Sum_probs=72.1

Q ss_pred             HHHHHHHcCC--CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC--------CCCcEEEEEcch
Q 029803           11 MAMLLRLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--------VDHKINFIESEA   80 (187)
Q Consensus        11 l~~l~~~~~~--~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--------~~~~~~~~~~d~   80 (187)
                      +...+...++  .+|||+|||+|..++++++.   +++|+++|.++..++.++++++...        +..+++++++|+
T Consensus        78 l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~  154 (258)
T 2oyr_A           78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS  154 (258)
T ss_dssp             HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred             HHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence            3334444566  89999999999999999986   5689999999998888887776432        224799999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcc--cHHHHHHHHhccCC
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV  122 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~--~~~~~~~~~~~L~~  122 (187)
                      .+.++.+      ..+||+||+|+....  ....++...+.|++
T Consensus       155 ~~~L~~~------~~~fDvV~lDP~y~~~~~saavkk~~~~lr~  192 (258)
T 2oyr_A          155 LTALTDI------TPRPQVVYLDPMFPHKQKSALVKKEMRVFQS  192 (258)
T ss_dssp             HHHSTTC------SSCCSEEEECCCCCCCCC-----HHHHHHHH
T ss_pred             HHHHHhC------cccCCEEEEcCCCCCcccchHHHHHHHHHHH
Confidence            9876653      247999999963221  12333444455544

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.11  E-value=2.5e-10  Score=86.68  Aligned_cols=91  Identities=10%  Similarity=0.108  Sum_probs=68.6

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      .+.+.+-+...+...++.+|||||||+|..+..++..   ..+|+++|+++++++.+++++..   ..+++++++|+.+.
T Consensus        14 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~   87 (255)
T 3tqs_A           14 DSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQF   87 (255)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhC
Confidence            3444555555556667889999999999999999985   46999999999999999999864   34799999999874


Q ss_pred             -HHHHhhcccCCCceeEEEEeCC
Q 029803           84 -LDQLLKYSENEGSFDYAFVDAD  105 (187)
Q Consensus        84 -~~~~~~~~~~~~~~D~i~~d~~  105 (187)
                       ++.+.    ..++|| |+.+..
T Consensus        88 ~~~~~~----~~~~~~-vv~NlP  105 (255)
T 3tqs_A           88 DFSSVK----TDKPLR-VVGNLP  105 (255)
T ss_dssp             CGGGSC----CSSCEE-EEEECC
T ss_pred             CHHHhc----cCCCeE-EEecCC
Confidence             23220    135688 666653

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.11  E-value=1e-10  Score=92.65  Aligned_cols=98  Identities=9%  Similarity=0.098  Sum_probs=78.0

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..+++.+| +.+++++|+ +.+++.+++.       .+++++.+|+.+.   +       ..
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~~---~-------p~  246 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFTS---I-------PN  246 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTTC---C-------CC
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCC-CCeEEEeeC-HHHHhhcccC-------CCcEEEeccccCC---C-------CC
Confidence            45678999999999999999999887 789999999 9888877641       2499999998641   1       34


Q ss_pred             eeEEEEeCCC---cc--cHHHHHHHHhccCC---CeEEEEeCCCC
Q 029803           97 FDYAFVDADK---DN--YCNYHERLMKLLKV---GGIAVYDNTLW  133 (187)
Q Consensus        97 ~D~i~~d~~~---~~--~~~~~~~~~~~L~~---gG~lv~~~~~~  133 (187)
                      ||+|++...-   ..  ...+++++.+.|+|   ||.+++.+...
T Consensus       247 ~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~  291 (352)
T 1fp2_A          247 ADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI  291 (352)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred             ccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence            9999987532   22  23789999999999   99998876654

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.10  E-value=8.6e-10  Score=84.39  Aligned_cols=110  Identities=12%  Similarity=0.026  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH-
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-   83 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-   83 (187)
                      +.+.+-+...+...++ +|||||||+|..+..++..   +.+|+++|+++++++.+++++.    ..+++++++|+.+. 
T Consensus        33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~---~~~V~avEid~~~~~~l~~~~~----~~~v~vi~~D~l~~~  104 (271)
T 3fut_A           33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEA---GAEVTAIEKDLRLRPVLEETLS----GLPVRLVFQDALLYP  104 (271)
T ss_dssp             HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHT---TCCEEEEESCGGGHHHHHHHTT----TSSEEEEESCGGGSC
T ss_pred             HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcC----CCCEEEEECChhhCC
Confidence            3444444444455666 9999999999999999986   4699999999999999999875    24799999999874 


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhc-cCCCeEEEEe
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL-LKVGGIAVYD  129 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~-L~~gG~lv~~  129 (187)
                      ++.       ...+|.|+.+.........+..++.. .-+.+++++.
T Consensus       105 ~~~-------~~~~~~iv~NlPy~iss~il~~ll~~~~~~~~~lm~Q  144 (271)
T 3fut_A          105 WEE-------VPQGSLLVANLPYHIATPLVTRLLKTGRFARLVFLVQ  144 (271)
T ss_dssp             GGG-------SCTTEEEEEEECSSCCHHHHHHHHHHCCEEEEEEEEE
T ss_pred             hhh-------ccCccEEEecCcccccHHHHHHHhcCCCCCEEEEEee
Confidence            221       13689888876444444444444433 1134555553

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.07  E-value=4.4e-10  Score=93.85  Aligned_cols=119  Identities=10%  Similarity=0.003  Sum_probs=89.0

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCC-----------------CCEEEEEeCCcchHHHHHHHHHh
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-----------------DGQITAIDVNRETYEIGLPIIKK   66 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~-----------------~~~v~~iD~~~~~~~~a~~~~~~   66 (187)
                      ++.+..++..++...+..+|+|.+||+|...+.++..+..                 ..+++++|+++.++..|+.++..
T Consensus       154 P~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l  233 (541)
T 2ar0_A          154 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL  233 (541)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH
Confidence            3445566666665556679999999999999888765421                 13799999999999999999887


Q ss_pred             cCCCC----cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc-----------------ccHHHHHHHHhccCCCeE
Q 029803           67 AGVDH----KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------------NYCNYHERLMKLLKVGGI  125 (187)
Q Consensus        67 ~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~-----------------~~~~~~~~~~~~L~~gG~  125 (187)
                      .+...    +..+.++|++.....      ...+||+|+.++...                 ....+++.+.+.|+|||.
T Consensus       234 ~gi~~~~~~~~~I~~gDtL~~~~~------~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr  307 (541)
T 2ar0_A          234 HDIEGNLDHGGAIRLGNTLGSDGE------NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGR  307 (541)
T ss_dssp             TTCCCBGGGTBSEEESCTTSHHHH------TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred             hCCCccccccCCeEeCCCcccccc------cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCE
Confidence            77653    278899998764321      136899999985321                 123689999999999998


Q ss_pred             EEE
Q 029803          126 AVY  128 (187)
Q Consensus       126 lv~  128 (187)
                      +++
T Consensus       308 ~a~  310 (541)
T 2ar0_A          308 AAV  310 (541)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            766

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.04  E-value=3.3e-10  Score=89.93  Aligned_cols=98  Identities=12%  Similarity=0.088  Sum_probs=77.4

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..+..+|||||||+|..+..+++..| +.+++++|+ +.+++.+++      . .+++++.+|..+  + +       .+
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~--~-~-------~~  251 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIFP-HLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK--S-I-------PS  251 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT--C-C-------CC
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHCC-CCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC--C-C-------CC
Confidence            45678999999999999999999987 789999999 787776653      2 349999999865  1 1       35


Q ss_pred             eeEEEEeCCC---cc--cHHHHHHHHhccCC---CeEEEEeCCCC
Q 029803           97 FDYAFVDADK---DN--YCNYHERLMKLLKV---GGIAVYDNTLW  133 (187)
Q Consensus        97 ~D~i~~d~~~---~~--~~~~~~~~~~~L~~---gG~lv~~~~~~  133 (187)
                      ||+|++....   ..  ...+++++.+.|+|   ||.+++.+...
T Consensus       252 ~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~  296 (358)
T 1zg3_A          252 ADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISI  296 (358)
T ss_dssp             CSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred             ceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence            9999987532   22  34789999999999   99998876654

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.02  E-value=3.5e-11  Score=91.90  Aligned_cols=98  Identities=11%  Similarity=0.011  Sum_probs=67.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHH-HHhcCCCCcEEEE--EcchHHHHHHHhhcccCC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI-IKKAGVDHKINFI--ESEALSVLDQLLKYSENE   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~-~~~~~~~~~~~~~--~~d~~~~~~~~~~~~~~~   94 (187)
                      .++.+|||+|||+|.++..+++.    ++|+++|+++ ++..+++. ........++.++  ++|+.++         ..
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l---------~~  138 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTL---------PV  138 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTS---------CC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHC---------CC
Confidence            45679999999999999998875    6899999998 43322211 0000111157888  8888652         14


Q ss_pred             CceeEEEEeCCC--ccc-------HHHHHHHHhccCCCe--EEEEe
Q 029803           95 GSFDYAFVDADK--DNY-------CNYHERLMKLLKVGG--IAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~--~~~-------~~~~~~~~~~L~~gG--~lv~~  129 (187)
                      ++||+|++|...  ...       ...++.+.+.|+|||  .+++.
T Consensus       139 ~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~k  184 (265)
T 2oxt_A          139 ERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVVK  184 (265)
T ss_dssp             CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEE
Confidence            789999998541  111       126788889999999  88884

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.02  E-value=4.3e-10  Score=86.79  Aligned_cols=90  Identities=13%  Similarity=0.157  Sum_probs=67.0

Q ss_pred             HcCCCEEEEEcccc------cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEE-EEcchHHHHHHHhh
Q 029803           17 LVNAKKTIEIGVFT------GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF-IESEALSVLDQLLK   89 (187)
Q Consensus        17 ~~~~~~vLeiG~g~------G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~   89 (187)
                      ..++.+|||+|||+      |.  ..++...+++++|+++|+++. +             .++++ +++|+.+..     
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-------------~~v~~~i~gD~~~~~-----  119 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-------------SDADSTLIGDCATVH-----  119 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-------------CSSSEEEESCGGGCC-----
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-------------CCCEEEEECccccCC-----
Confidence            45677999999944      66  555666665789999999998 1             24778 999986531     


Q ss_pred             cccCCCceeEEEEeCCCc--------------ccHHHHHHHHhccCCCeEEEEeC
Q 029803           90 YSENEGSFDYAFVDADKD--------------NYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~~--------------~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                         ..++||+|+++....              .+...++.+.+.|+|||.+++..
T Consensus       120 ---~~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~  171 (290)
T 2xyq_A          120 ---TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKI  171 (290)
T ss_dssp             ---CSSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---ccCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence               136899999974321              13467899999999999999863

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.02  E-value=5.1e-11  Score=91.51  Aligned_cols=98  Identities=7%  Similarity=-0.017  Sum_probs=68.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHH-HhcCCCCcEEEE--EcchHHHHHHHhhcccCC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII-KKAGVDHKINFI--ESEALSVLDQLLKYSENE   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~-~~~~~~~~~~~~--~~d~~~~~~~~~~~~~~~   94 (187)
                      .++.+|||+|||+|.++..+++.    ++|+++|+++ ++..++++. .......+++++  ++|+.++         ..
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l---------~~  146 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKM---------EP  146 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGC---------CC
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhC---------CC
Confidence            35679999999999999999875    5899999998 533332210 001111257888  8898652         14


Q ss_pred             CceeEEEEeCCCc--c-----c--HHHHHHHHhccCCCe--EEEEe
Q 029803           95 GSFDYAFVDADKD--N-----Y--CNYHERLMKLLKVGG--IAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~--~-----~--~~~~~~~~~~L~~gG--~lv~~  129 (187)
                      ++||+|++|....  .     .  ...++.+.+.|+|||  .+++.
T Consensus       147 ~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~  192 (276)
T 2wa2_A          147 FQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVK  192 (276)
T ss_dssp             CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred             CCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEE
Confidence            7899999985411  1     1  135788889999999  88884

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.98  E-value=2.4e-10  Score=89.01  Aligned_cols=96  Identities=9%  Similarity=0.016  Sum_probs=66.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC----CcchHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhccc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV----NRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSE   92 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~----~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~   92 (187)
                      .++.+|||+|||+|.++..+++.    ++|+++|+    ++.+++.+.  .+..+ .++++++++ |+.+.         
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l---------  144 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFI---------  144 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTS---------
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccC---------
Confidence            34679999999999999999875    48999999    454332111  01111 146899998 87642         


Q ss_pred             CCCceeEEEEeCCCc--c----c---HHHHHHHHhccCCCeEEEEe
Q 029803           93 NEGSFDYAFVDADKD--N----Y---CNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~--~----~---~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..++||+|++|....  .    .   ...++.+.+.|+|||.+++.
T Consensus       145 ~~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          145 PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             CcCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            136899999986431  1    1   13577778999999999984

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.98  E-value=1.7e-09  Score=81.62  Aligned_cols=62  Identities=18%  Similarity=0.201  Sum_probs=53.0

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      ...++.+|||||||+|..+..++..   ..+|+++|+++++++.+++++...   ++++++++|+.+.
T Consensus        27 ~~~~~~~VLDiG~G~G~lt~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~---~~v~~~~~D~~~~   88 (244)
T 1qam_A           27 RLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQF   88 (244)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGGC
T ss_pred             CCCCCCEEEEEeCCchHHHHHHHHc---CCeEEEEECCHHHHHHHHHhhccC---CCeEEEEChHHhC
Confidence            3456789999999999999999987   369999999999999999987532   4799999999763

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.93  E-value=7.8e-10  Score=92.34  Aligned_cols=118  Identities=10%  Similarity=0.082  Sum_probs=86.0

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCC--------------CCEEEEEeCCcchHHHHHHHHHhcCC
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE--------------DGQITAIDVNRETYEIGLPIIKKAGV   69 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~--------------~~~v~~iD~~~~~~~~a~~~~~~~~~   69 (187)
                      ++.+..+|..++...+ .+|+|.+||+|...+.++..+..              ..+++++|+++.++..|+.++..+++
T Consensus       230 P~~Vv~lmv~ll~p~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi  308 (544)
T 3khk_A          230 PKSIVTLIVEMLEPYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI  308 (544)
T ss_dssp             CHHHHHHHHHHHCCCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHhcCC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCC
Confidence            4556667766665433 49999999999988877654320              35899999999999999999998888


Q ss_pred             CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcc--------------------------------cHHHHHHHH
Q 029803           70 DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--------------------------------YCNYHERLM  117 (187)
Q Consensus        70 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~--------------------------------~~~~~~~~~  117 (187)
                      ..++.+.++|++... .     ....+||+|+.++....                                ...+++.++
T Consensus       309 ~~~i~i~~gDtL~~~-~-----~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l  382 (544)
T 3khk_A          309 DFNFGKKNADSFLDD-Q-----HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHML  382 (544)
T ss_dssp             CCBCCSSSCCTTTSC-S-----CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHH
T ss_pred             CcccceeccchhcCc-c-----cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHH
Confidence            765555888876421 0     12468999998752110                                025889999


Q ss_pred             hccCCCeEEEE
Q 029803          118 KLLKVGGIAVY  128 (187)
Q Consensus       118 ~~L~~gG~lv~  128 (187)
                      +.|+|||.+.+
T Consensus       383 ~~Lk~gGr~ai  393 (544)
T 3khk_A          383 YHLAPTGSMAL  393 (544)
T ss_dssp             HTEEEEEEEEE
T ss_pred             HHhccCceEEE
Confidence            99999998655

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.87  E-value=9.6e-09  Score=86.74  Aligned_cols=100  Identities=12%  Similarity=0.092  Sum_probs=75.6

Q ss_pred             CCEEEEEcccccHHHHH---HHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           20 AKKTIEIGVFTGYSLLL---TALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~---la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ...|+++|||+|-....   .++......+|++||-++ ++..+++.+..+++.++++++++|+.+.-        -+++
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~--------LPEK  428 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWV--------APEK  428 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCC--------CSSC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceecc--------CCcc
Confidence            35799999999988444   333332234799999987 67788999999999999999999998751        1479


Q ss_pred             eeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEE
Q 029803           97 FDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        97 ~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|+|+..-     ..+.....+...-+.|||||+++=
T Consensus       429 VDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimiP  465 (637)
T 4gqb_A          429 ADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSIP  465 (637)
T ss_dssp             EEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEES
T ss_pred             cCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEcc
Confidence            99998652     234445666666789999999864

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.87  E-value=3.8e-09  Score=81.18  Aligned_cols=74  Identities=12%  Similarity=0.101  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      +.+.+-+...+...++.+|||||||+|..+..++...+. +++|+++|+++++++.++++.     ..+++++++|+.+.
T Consensus        28 ~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           28 HGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGDALTF  102 (279)
T ss_dssp             HHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESCGGGC
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECChhcC
Confidence            344444444455667889999999999999999987542 245999999999999999983     34799999999874

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.86  E-value=3.6e-09  Score=90.88  Aligned_cols=120  Identities=13%  Similarity=0.090  Sum_probs=85.4

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhC---C--------------------------------------
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---P--------------------------------------   42 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~---~--------------------------------------   42 (187)
                      .+..+..+-.+....+...+||.+||+|..++.++...   +                                      
T Consensus       175 ~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~  254 (703)
T 3v97_A          175 KETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAE  254 (703)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcccc
Confidence            34455555555555677899999999999998877642   1                                      


Q ss_pred             CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-------cccHHHHHH
Q 029803           43 EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------DNYCNYHER  115 (187)
Q Consensus        43 ~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-------~~~~~~~~~  115 (187)
                      +..+++++|+++.+++.|++|+..+++.+.+++.++|+.+.....     ..++||+|++++..       .....+++.
T Consensus       255 ~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~-----~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~  329 (703)
T 3v97_A          255 YSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPL-----PKGPYGTVLSNPPYGERLDSEPALIALHSL  329 (703)
T ss_dssp             CCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSC-----TTCCCCEEEECCCCCC---CCHHHHHHHHH
T ss_pred             CCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCcccc-----ccCCCCEEEeCCCccccccchhHHHHHHHH
Confidence            125899999999999999999999999888999999997642110     12389999998542       122334443


Q ss_pred             H---HhccCCCeEEEE
Q 029803          116 L---MKLLKVGGIAVY  128 (187)
Q Consensus       116 ~---~~~L~~gG~lv~  128 (187)
                      +   ++.+.|||.+.+
T Consensus       330 l~~~lk~~~~g~~~~i  345 (703)
T 3v97_A          330 LGRIMKNQFGGWNLSL  345 (703)
T ss_dssp             HHHHHHHHCTTCEEEE
T ss_pred             HHHHHHhhCCCCeEEE
Confidence            3   445557886655

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.84  E-value=1.2e-10  Score=87.79  Aligned_cols=102  Identities=16%  Similarity=0.186  Sum_probs=72.8

Q ss_pred             HHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      .+...++.+|||||||+|..+..++..   ..+|+++|+++++++.+++++.   ...+++++++|+.+..  +    ..
T Consensus        24 ~~~~~~~~~VLDiG~G~G~~~~~l~~~---~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~~--~----~~   91 (245)
T 1yub_A           24 QLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQFQ--F----PN   91 (245)
T ss_dssp             HCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTTT--C----CC
T ss_pred             hcCCCCCCEEEEEeCCCCHHHHHHHHh---CCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhcC--c----cc
Confidence            334456779999999999999999987   3799999999999999988765   2357999999987641  1    01


Q ss_pred             CCceeEEEEeCCCccc----H----------HHH----HHHHhccCCCeEEEE
Q 029803           94 EGSFDYAFVDADKDNY----C----------NYH----ERLMKLLKVGGIAVY  128 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~----~----------~~~----~~~~~~L~~gG~lv~  128 (187)
                      .++| .|+++......    .          ..+    +.+.++|+|||.+.+
T Consensus        92 ~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v  143 (245)
T 1yub_A           92 KQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL  143 (245)
T ss_dssp             SSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred             CCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence            2578 67766422111    1          122    557788999988765

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.83  E-value=1.3e-08  Score=77.02  Aligned_cols=110  Identities=16%  Similarity=0.099  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH-H
Q 029803            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-L   84 (187)
Q Consensus         6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~   84 (187)
                      ...+-+...+...++.+|||||||+|..+..++.. + ..+|+++|+++.+++.++++    . ..+++++++|+.+. +
T Consensus        18 ~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~-~-~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~~~~   90 (249)
T 3ftd_A           18 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH-P-LKKLYVIELDREMVENLKSI----G-DERLEVINEDASKFPF   90 (249)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS-C-CSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTTCCG
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhhCCh
Confidence            33334444444557789999999999999999885 2 47999999999999999877    2 34699999999764 2


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhc--cCCCeEEEEe
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKL--LKVGGIAVYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~--L~~gG~lv~~  129 (187)
                      +..      ...+ .|+.+.........+..+++.  .-+.+++++.
T Consensus        91 ~~~------~~~~-~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~Q  130 (249)
T 3ftd_A           91 CSL------GKEL-KVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQ  130 (249)
T ss_dssp             GGS------CSSE-EEEEECCTTTHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             hHc------cCCc-EEEEECchhccHHHHHHHHhcCCCCceEEEEEe
Confidence            221      1233 666665444444455555443  2345666664

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.82  E-value=1.4e-08  Score=84.68  Aligned_cols=121  Identities=13%  Similarity=0.074  Sum_probs=92.0

Q ss_pred             CcHHHHHHHHHHHH----HcCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEE
Q 029803            3 LLTIHGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVD-HKINF   75 (187)
Q Consensus         3 ~~~~~~~ll~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~   75 (187)
                      .++.+..+|..++.    ..++.+|+|.+||+|...+.++..+.  ...+++++|+++.++..|+.++..++.. .+..+
T Consensus       201 TP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I  280 (542)
T 3lkd_A          201 TPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFL  280 (542)
T ss_dssp             CCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred             ccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccce
Confidence            34667777777777    34667999999999999988888763  2578999999999999999999888875 46899


Q ss_pred             EEcchHHHH-HHHhhcccCCCceeEEEEeCCC------c----------cc----------HHHHHHHHhccC-CCeEEE
Q 029803           76 IESEALSVL-DQLLKYSENEGSFDYAFVDADK------D----------NY----------CNYHERLMKLLK-VGGIAV  127 (187)
Q Consensus        76 ~~~d~~~~~-~~~~~~~~~~~~~D~i~~d~~~------~----------~~----------~~~~~~~~~~L~-~gG~lv  127 (187)
                      .++|++..- +.     ....+||+|+.++..      .          .+          ..++..+.+.|+ +||.+.
T Consensus       281 ~~gDtL~~d~p~-----~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a  355 (542)
T 3lkd_A          281 HNADTLDEDWPT-----QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMA  355 (542)
T ss_dssp             EESCTTTSCSCC-----SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEE
T ss_pred             Eecceecccccc-----cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEE
Confidence            999987530 11     124689999987421      0          01          237899999999 999875


Q ss_pred             E
Q 029803          128 Y  128 (187)
Q Consensus       128 ~  128 (187)
                      +
T Consensus       356 ~  356 (542)
T 3lkd_A          356 I  356 (542)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.82  E-value=1.8e-08  Score=76.29  Aligned_cols=105  Identities=12%  Similarity=0.008  Sum_probs=68.4

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      .+.....+-..+...++.+|||||||+|..+. ++. .+ ..+|+++|+++++++.+++++...   ++++++++|+.+.
T Consensus         6 d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~-~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~~~   79 (252)
T 1qyr_A            6 DQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ER-LDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAMTF   79 (252)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TT-CSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGGGC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CC-CCeEEEEECCHHHHHHHHHHhccC---CceEEEECchhhC
Confidence            34444444444556677899999999999999 654 22 234999999999999999876532   4799999999773


Q ss_pred             -HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHH
Q 029803           84 -LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  117 (187)
Q Consensus        84 -~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~  117 (187)
                       ++.....   .+..|.|+...........+.++.
T Consensus        80 ~~~~~~~~---~~~~~~vvsNlPY~i~~~il~~ll  111 (252)
T 1qyr_A           80 NFGELAEK---MGQPLRVFGNLPYNISTPLMFHLF  111 (252)
T ss_dssp             CHHHHHHH---HTSCEEEEEECCTTTHHHHHHHHH
T ss_pred             CHHHhhcc---cCCceEEEECCCCCccHHHHHHHH
Confidence             3332100   023567777654433333443333

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.80  E-value=1.2e-08  Score=86.46  Aligned_cols=106  Identities=11%  Similarity=-0.031  Sum_probs=73.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC------------CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIP------------EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~------------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      .+.|||+|||+|-.+...+.+..            ...+|++||.++.+....+.... +++.++++++++|+.+.-...
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            46899999999998643322211            13599999999977766665544 788889999999998863210


Q ss_pred             hhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEE
Q 029803           88 LKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..  ...++.|+|+...     ..+...+.+..+-+.|+|||+++-
T Consensus       489 ~~--~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~iP  532 (745)
T 3ua3_A          489 KD--RGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISIP  532 (745)
T ss_dssp             HH--TTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEES
T ss_pred             cc--CCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEEC
Confidence            00  1247999998763     223445666767789999999874

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.75  E-value=1.4e-08  Score=77.43  Aligned_cols=112  Identities=13%  Similarity=0.159  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      ...++..+-. .++..+||+.+|+|..++.+++.   ..+++.+|.+++.++..++|++.   ..+++++++|+...+..
T Consensus        80 l~~yf~~l~~-~n~~~~LDlfaGSGaLgiEaLS~---~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~  152 (283)
T 2oo3_A           80 FLEYISVIKQ-INLNSTLSYYPGSPYFAINQLRS---QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNA  152 (283)
T ss_dssp             GHHHHHHHHH-HSSSSSCCEEECHHHHHHHHSCT---TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHH-hcCCCceeEeCCcHHHHHHHcCC---CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHH
Confidence            3456666555 46778999999999999998873   57999999999999999999864   45799999999988877


Q ss_pred             HhhcccCCCceeEEEEeCCCc---ccHHHHHHHHh--ccCCCeEEEE
Q 029803           87 LLKYSENEGSFDYAFVDADKD---NYCNYHERLMK--LLKVGGIAVY  128 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~~~---~~~~~~~~~~~--~L~~gG~lv~  128 (187)
                      +...   ..+||+||+|+..+   .+...++.+.+  .+.++|++++
T Consensus       153 l~~~---~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~  196 (283)
T 2oo3_A          153 LLPP---PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCV  196 (283)
T ss_dssp             HCSC---TTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             hcCC---CCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEE
Confidence            6432   45799999998543   45555555543  6677888776

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.73  E-value=7.9e-08  Score=82.71  Aligned_cols=120  Identities=11%  Similarity=0.029  Sum_probs=81.2

Q ss_pred             CcHHHHHHHHHHHH--H----cCCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHHH--HHHHHhcCCC--
Q 029803            3 LLTIHGQLMAMLLR--L----VNAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIG--LPIIKKAGVD--   70 (187)
Q Consensus         3 ~~~~~~~ll~~l~~--~----~~~~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a--~~~~~~~~~~--   70 (187)
                      .++.++.++..++.  .    .++.+|||.|||+|...+.++..++  ...+++++|+++.+++.|  +.++..+.+.  
T Consensus       299 TP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhG  378 (878)
T 3s1s_A          299 TDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSS  378 (878)
T ss_dssp             CCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBT
T ss_pred             CCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcC
Confidence            35667777777632  1    2467999999999999999988764  136899999999999999  5554332221  


Q ss_pred             -CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc--------------------------------ccHHHHHHHH
Q 029803           71 -HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--------------------------------NYCNYHERLM  117 (187)
Q Consensus        71 -~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~--------------------------------~~~~~~~~~~  117 (187)
                       ....+...|..+....      ...+||+|+.++...                                .+..+++.+.
T Consensus       379 i~~~~I~~dD~L~~~~~------~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al  452 (878)
T 3s1s_A          379 NNAPTITGEDVCSLNPE------DFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVT  452 (878)
T ss_dssp             TBCCEEECCCGGGCCGG------GGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHH
T ss_pred             CCcceEEecchhccccc------ccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHH
Confidence             1235556665542111      136899999885320                                0234678888


Q ss_pred             hccCCCeEEEE
Q 029803          118 KLLKVGGIAVY  128 (187)
Q Consensus       118 ~~L~~gG~lv~  128 (187)
                      ++|++||.+.+
T Consensus       453 ~lLKpGGrLAf  463 (878)
T 3s1s_A          453 ELVQDGTVISA  463 (878)
T ss_dssp             HHSCTTCEEEE
T ss_pred             HhcCCCcEEEE
Confidence            99999998876

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.71  E-value=5.1e-09  Score=74.65  Aligned_cols=89  Identities=9%  Similarity=0.117  Sum_probs=67.1

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+||++|||.                 +.+|+++++++.|++++.     .++++.++|+.+....    ....++
T Consensus        10 ~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~----~~~~~~   63 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQS----AHKESS   63 (176)
T ss_dssp             CCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGG----CCCSSC
T ss_pred             CCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccc----cCCCCC
Confidence            45778999999975                 238999999999998753     2488999998754210    002578


Q ss_pred             eeEEEEeC---CC-cccHHHHHHHHhccCCCeEEEEeCC
Q 029803           97 FDYAFVDA---DK-DNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        97 ~D~i~~d~---~~-~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ||+|++..   .. .+....++++.++|||||.+++.+.
T Consensus        64 fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           64 FDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             EEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcc
Confidence            99999853   22 5668899999999999999999543

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.65  E-value=1.5e-07  Score=71.72  Aligned_cols=91  Identities=8%  Similarity=0.063  Sum_probs=69.2

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      +++..+ ...++..+||.+||.|..+..+++.   +++|+++|.+|++++.+++ ++.    +++++++++..++...+.
T Consensus        13 e~le~L-~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l~~~L~   83 (285)
T 1wg8_A           13 EALDLL-AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHLKRHLA   83 (285)
T ss_dssp             HHHHHH-TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGHHHHHH
T ss_pred             HHHHhh-CCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchHHHHHH
Confidence            344433 3456789999999999999999986   6899999999999999998 643    589999999977633332


Q ss_pred             hcccCCCceeEEEEeCCCcccH
Q 029803           89 KYSENEGSFDYAFVDADKDNYC  110 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~~~~~  110 (187)
                      ..  ..+++|.|++|...+.++
T Consensus        84 ~~--g~~~vDgIL~DLGvSS~Q  103 (285)
T 1wg8_A           84 AL--GVERVDGILADLGVSSFH  103 (285)
T ss_dssp             HT--TCSCEEEEEEECSCCHHH
T ss_pred             Hc--CCCCcCEEEeCCcccccc
Confidence            21  235799999997655544

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.46  E-value=7.8e-07  Score=61.13  Aligned_cols=80  Identities=8%  Similarity=-0.003  Sum_probs=58.3

Q ss_pred             cCCCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..+.+|||||||.| ..+..+++..  +..|+++|++|..++                +++.|.++....+      -..
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~----------------~v~dDiF~P~~~~------Y~~   89 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG----------------IVRDDITSPRMEI------YRG   89 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT----------------EECCCSSSCCHHH------HTT
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc----------------eEEccCCCCcccc------cCC
Confidence            34679999999999 5999998742  678999999998765                7777876632222      158


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccC
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLK  121 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~  121 (187)
                      ||+|+.-..+...+..+-.+.+...
T Consensus        90 ~DLIYsirPP~El~~~i~~lA~~v~  114 (153)
T 2k4m_A           90 AALIYSIRPPAEIHSSLMRVADAVG  114 (153)
T ss_dssp             EEEEEEESCCTTTHHHHHHHHHHHT
T ss_pred             cCEEEEcCCCHHHHHHHHHHHHHcC
Confidence            9999876666676666665655443

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.39  E-value=1.6e-06  Score=67.69  Aligned_cols=86  Identities=16%  Similarity=0.157  Sum_probs=66.6

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++..++|.++|.|..+..+++.+.++++|+++|.++++++.++ ++    ..+++++++++..++...+... +-.++
T Consensus        55 i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~~l~~~L~~~-g~~~~  128 (347)
T 3tka_A           55 IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFSALGEYVAER-DLIGK  128 (347)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGGGHHHHHHHT-TCTTC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHHHHHHHHHhc-CCCCc
Confidence            346679999999999999999998876899999999999999884 33    2468999999987765444322 11136


Q ss_pred             eeEEEEeCCCcc
Q 029803           97 FDYAFVDADKDN  108 (187)
Q Consensus        97 ~D~i~~d~~~~~  108 (187)
                      +|.|+.|...+.
T Consensus       129 vDgILfDLGVSS  140 (347)
T 3tka_A          129 IDGILLDLGVSS  140 (347)
T ss_dssp             EEEEEEECSCCH
T ss_pred             ccEEEECCccCH
Confidence            999999965544

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.20  E-value=3.5e-06  Score=70.21  Aligned_cols=121  Identities=13%  Similarity=0.107  Sum_probs=86.7

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCC------------CCEEEEEeCCcchHHHHHHHHHhcCCC
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE------------DGQITAIDVNRETYEIGLPIIKKAGVD   70 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~------------~~~v~~iD~~~~~~~~a~~~~~~~~~~   70 (187)
                      .++.+..++..++...++.+|+|-+||+|.+.+.....+..            ...++++|+++.++..|+.++-.++..
T Consensus       201 TP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~  280 (530)
T 3ufb_A          201 TPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE  280 (530)
T ss_dssp             CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS
T ss_pred             CcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc
Confidence            35677788888888778889999999999998877654421            246999999999999999998877765


Q ss_pred             CcEEEEEcchHHH-HHHHhhcccCCCceeEEEEeCCCc-------------------ccHHHHHHHHhccC-------CC
Q 029803           71 HKINFIESEALSV-LDQLLKYSENEGSFDYAFVDADKD-------------------NYCNYHERLMKLLK-------VG  123 (187)
Q Consensus        71 ~~~~~~~~d~~~~-~~~~~~~~~~~~~~D~i~~d~~~~-------------------~~~~~~~~~~~~L~-------~g  123 (187)
                       ...+.++|.+.. ....    ....+||+|+.++...                   ....++..++..|+       +|
T Consensus       281 -~~~I~~~dtL~~~~~~~----~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~g  355 (530)
T 3ufb_A          281 -YPRIDPENSLRFPLREM----GDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNG  355 (530)
T ss_dssp             -CCEEECSCTTCSCGGGC----CGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSC
T ss_pred             -cccccccccccCchhhh----cccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCC
Confidence             356788887642 1111    1135799999885321                   11346777877776       68


Q ss_pred             eEEEE
Q 029803          124 GIAVY  128 (187)
Q Consensus       124 G~lv~  128 (187)
                      |.+.+
T Consensus       356 Gr~av  360 (530)
T 3ufb_A          356 GRAAV  360 (530)
T ss_dssp             CEEEE
T ss_pred             ceEEE
Confidence            87655

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.13  E-value=1.5e-06  Score=65.84  Aligned_cols=105  Identities=14%  Similarity=0.123  Sum_probs=63.6

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..+..+|||+|||.|.++.+++...+ ...++++|+.-+........ ...+  .++..+.+++..  ..+     ..++
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~-~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~~~dv--~~l-----~~~~  140 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKE-VSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKDKTDI--HRL-----EPVK  140 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEECSCCT--TTS-----CCCC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcC-CCcceeEEEeccCccccccc-CcCC--CCeEEEecccee--hhc-----CCCC
Confidence            44567899999999999998887543 45788888764431100000 0001  123334554311  111     2578


Q ss_pred             eeEEEEeCCCc----cc-----HHHHHHHHhccCCC-eEEEEeCCCC
Q 029803           97 FDYAFVDADKD----NY-----CNYHERLMKLLKVG-GIAVYDNTLW  133 (187)
Q Consensus        97 ~D~i~~d~~~~----~~-----~~~~~~~~~~L~~g-G~lv~~~~~~  133 (187)
                      ||+|++|..+.    ..     ...++.+.+.|+|| |.+|+. ++.
T Consensus       141 ~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~K-Vf~  186 (277)
T 3evf_A          141 CDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVK-VLA  186 (277)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE-ESC
T ss_pred             ccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEE-ecC
Confidence            99999997443    11     12356677999999 999994 553

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.09  E-value=1.9e-05  Score=62.53  Aligned_cols=72  Identities=8%  Similarity=0.170  Sum_probs=54.0

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.++||+||+.|.++..+++.   +++|++||+.+ +-..    +.  . .++++++++|+....+       ...+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~-l~~~----l~--~-~~~V~~~~~d~~~~~~-------~~~~  270 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP-MAQS----LM--D-TGQVTWLREDGFKFRP-------TRSN  270 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSC-CCHH----HH--T-TTCEEEECSCTTTCCC-------CSSC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhh-cChh----hc--c-CCCeEEEeCccccccC-------CCCC
Confidence            357889999999999999999875   68999999764 2221    11  1 2469999999876432       2468


Q ss_pred             eeEEEEeCCC
Q 029803           97 FDYAFVDADK  106 (187)
Q Consensus        97 ~D~i~~d~~~  106 (187)
                      +|+|++|-..
T Consensus       271 ~D~vvsDm~~  280 (375)
T 4auk_A          271 ISWMVCDMVE  280 (375)
T ss_dssp             EEEEEECCSS
T ss_pred             cCEEEEcCCC
Confidence            9999999754

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.06  E-value=1.8e-05  Score=61.06  Aligned_cols=57  Identities=12%  Similarity=0.106  Sum_probs=46.9

Q ss_pred             HHHHHHHHH--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC
Q 029803            9 QLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG   68 (187)
Q Consensus         9 ~ll~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   68 (187)
                      +++..++..  .++..|||++||+|.+++.++..   +.+++++|+++++++.|++++....
T Consensus       223 ~l~~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~  281 (297)
T 2zig_A          223 ELAERLVRMFSFVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREV  281 (297)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhc
Confidence            455555543  46789999999999999988774   5799999999999999999998654

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.06  E-value=3.2e-06  Score=64.24  Aligned_cols=101  Identities=12%  Similarity=0.050  Sum_probs=63.3

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~   95 (187)
                      ..+..+|||+|||.|.|+.+++...+ ...++++|+.......+... ...+ .+.+.+... |..    .+     ..+
T Consensus        88 Lk~~~~VLDLGaAPGGWsQvAa~~~g-v~sV~GvdvG~d~~~~pi~~-~~~g-~~ii~~~~~~dv~----~l-----~~~  155 (282)
T 3gcz_A           88 VKPTGIVVDLGCGRGGWSYYAASLKN-VKKVMAFTLGVQGHEKPIMR-TTLG-WNLIRFKDKTDVF----NM-----EVI  155 (282)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCCC-CBTT-GGGEEEECSCCGG----GS-----CCC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcC-CCeeeeEEeccCcccccccc-ccCC-CceEEeeCCcchh----hc-----CCC
Confidence            45667999999999999999887554 56789999876532222110 0011 122333322 322    11     257


Q ss_pred             ceeEEEEeCCCcc---------cHHHHHHHHhccCCC--eEEEEe
Q 029803           96 SFDYAFVDADKDN---------YCNYHERLMKLLKVG--GIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d~~~~~---------~~~~~~~~~~~L~~g--G~lv~~  129 (187)
                      ++|+|++|..+..         ....++.+.+.|+||  |.+|+.
T Consensus       156 ~~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~K  200 (282)
T 3gcz_A          156 PGDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIK  200 (282)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CcCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEE
Confidence            8999999975431         112466667899999  999985

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.99  E-value=8.9e-06  Score=69.78  Aligned_cols=109  Identities=12%  Similarity=0.040  Sum_probs=74.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-------CC----CCEEEEEeCCcchHHHHHH--------------HHHhcCC----
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-------PE----DGQITAIDVNRETYEIGLP--------------IIKKAGV----   69 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-------~~----~~~v~~iD~~~~~~~~a~~--------------~~~~~~~----   69 (187)
                      ++-+|+|+|.|+|++.+.+.+..       |.    ..+++++|..|-..+..++              .+..+..    
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            45689999999999888876643       11    1579999986644444443              2222211    


Q ss_pred             ------C---CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCccc------HHHHHHHHhccCCCeEEEEe
Q 029803           70 ------D---HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNY------CNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        70 ------~---~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~------~~~~~~~~~~L~~gG~lv~~  129 (187)
                            .   -.++++.||+.+.++.+...  ....+|.+|+|+-.+..      ..++..+.+++++||.+...
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~--~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~  210 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLLPTLDDS--LNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTF  210 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHGGGCCGG--GTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEES
T ss_pred             ceEEEecCCcEEEEEEccCHHHHHhhcccc--cCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence                  1   14678999999988765210  13689999999743332      67899999999999998763

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.94  E-value=0.00013  Score=54.02  Aligned_cols=100  Identities=10%  Similarity=0.049  Sum_probs=67.0

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~   95 (187)
                      ..+...|||+||+.|.++.+++.... ..+|+++|+-+.--+.= ..++..|. +.+++..+ |....         ...
T Consensus        76 l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~P-~~~~s~gw-n~v~fk~gvDv~~~---------~~~  143 (267)
T 3p8z_A           76 VIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEEP-VPMSTYGW-NIVKLMSGKDVFYL---------PPE  143 (267)
T ss_dssp             SCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCCC-CCCCCTTT-TSEEEECSCCGGGC---------CCC
T ss_pred             CCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccCc-chhhhcCc-CceEEEeccceeec---------CCc
Confidence            45677999999999999998887654 46899999865422100 00122333 46999999 87332         246


Q ss_pred             ceeEEEEeCCCcc---------cHHHHHHHHhccCCCeEEEEe
Q 029803           96 SFDYAFVDADKDN---------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d~~~~~---------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++|.|+||-.+..         ....++.+.+.|++ |-+++.
T Consensus       144 ~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~K  185 (267)
T 3p8z_A          144 KCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIK  185 (267)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEE
T ss_pred             cccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEE
Confidence            8999999954322         12356666788988 677763

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.93  E-value=2.4e-05  Score=61.84  Aligned_cols=59  Identities=7%  Similarity=0.046  Sum_probs=49.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      ...|||||+|.|..|..++.... ..+|+++|+++..+...++.+ .   .++++++++|+.++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~l~~  117 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDPYDW  117 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCTTCH
T ss_pred             CCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCccch
Confidence            47899999999999999998533 468999999999998888776 2   35799999999764

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.89  E-value=0.00015  Score=56.03  Aligned_cols=106  Identities=14%  Similarity=0.176  Sum_probs=66.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhh---CCCCCE--EEEEeCCc--------c-hHHHHHHHHHhcCC--CC--cEEEEEcc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALT---IPEDGQ--ITAIDVNR--------E-TYEIGLPIIKKAGV--DH--KINFIESE   79 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~---~~~~~~--v~~iD~~~--------~-~~~~a~~~~~~~~~--~~--~~~~~~~d   79 (187)
                      .+.-+|+|+|-|+|.+.+.....   ..+..+  ++++|..+        + ..+..+........  ..  ..+++.+|
T Consensus        95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GD  174 (308)
T 3vyw_A           95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGD  174 (308)
T ss_dssp             CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESC
T ss_pred             CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEech
Confidence            34468999999999876543321   122444  56666432        1 12222222222210  12  34678999


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCC-C----cc-cHHHHHHHHhccCCCeEEEE
Q 029803           80 ALSVLDQLLKYSENEGSFDYAFVDAD-K----DN-YCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~D~i~~d~~-~----~~-~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +.+.++.+     ...++|++|.|+- +    +. ..++++.+.++++|||+++-
T Consensus       175 a~~~l~~l-----~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT  224 (308)
T 3vyw_A          175 ARKRIKEV-----ENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS  224 (308)
T ss_dssp             HHHHGGGC-----CSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHhhh-----cccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence            99988775     2347999999972 1    11 25789999999999999975

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.86  E-value=1.2e-05  Score=60.20  Aligned_cols=96  Identities=13%  Similarity=0.044  Sum_probs=60.3

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCC--C-CCEEEEEeC--CcchHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIP--E-DGQITAIDV--NRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKY   90 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~--~-~~~v~~iD~--~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~   90 (187)
                      ..+..+|||+||+.|.|+.+++...+  . .+.++++|+  .|-...       ..+. +.+++.++ |..+.       
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~~-------~~Gv-~~i~~~~G~Df~~~-------  135 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQ-------SYGW-NIVTMKSGVDVFYK-------  135 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCCC-------STTG-GGEEEECSCCGGGS-------
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCccc-------CCCc-eEEEeeccCCccCC-------
Confidence            45677999999999999999988522  1 234555552  111000       0111 23566667 88762       


Q ss_pred             ccCCCceeEEEEeCCCcc---------cHHHHHHHHhccCCCe-EEEEe
Q 029803           91 SENEGSFDYAFVDADKDN---------YCNYHERLMKLLKVGG-IAVYD  129 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~~~---------~~~~~~~~~~~L~~gG-~lv~~  129 (187)
                        ...++|+|++|..+..         ....++.+.+.|+||| .+++.
T Consensus       136 --~~~~~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvK  182 (269)
T 2px2_A          136 --PSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIK  182 (269)
T ss_dssp             --CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             --CCCCCCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEE
Confidence              2458999999964421         1124566678999999 88874

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.85  E-value=1.4e-05  Score=61.13  Aligned_cols=101  Identities=12%  Similarity=0.104  Sum_probs=62.1

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~   95 (187)
                      ..+.++|||+||+.|.|+..+++..+ ...|+++|+.......... +...+ .+.+.+..+ |...    +     ..+
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~g-v~sV~Gvdlg~~~~~~P~~-~~~~~-~~iv~~~~~~di~~----l-----~~~  146 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKE-VMSVKGYTLGIEGHEKPIH-MQTLG-WNIVKFKDKSNVFT----M-----PTE  146 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTT-EEEEEEECCCCTTSCCCCC-CCBTT-GGGEEEECSCCTTT----S-----CCC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcC-CceeeeEEecccccccccc-ccccC-CceEEeecCceeee----c-----CCC
Confidence            34667999999999999999997543 4578899986532110000 00001 122333322 2211    1     247


Q ss_pred             ceeEEEEeCCCcc---------cHHHHHHHHhccCCC-eEEEEe
Q 029803           96 SFDYAFVDADKDN---------YCNYHERLMKLLKVG-GIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d~~~~~---------~~~~~~~~~~~L~~g-G~lv~~  129 (187)
                      ++|+|++|..+..         ....++.+.+.|+|| |.+|+.
T Consensus       147 ~~DlVlsD~APnsG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K  190 (300)
T 3eld_A          147 PSDTLLCDIGESSSNPLVERDRTMKVLENFERWKHVNTENFCVK  190 (300)
T ss_dssp             CCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             CcCEEeecCcCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            8999999975431         023466667899999 999986

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.72  E-value=0.00021  Score=54.61  Aligned_cols=101  Identities=13%  Similarity=0.076  Sum_probs=65.0

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~   95 (187)
                      ..+...|||+||+.|.++.+++.... ..+|+++|+...--+.= ..+++.+. +.+.++.+ |+...         ...
T Consensus        92 l~~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~P-~~~~ql~w-~lV~~~~~~Dv~~l---------~~~  159 (321)
T 3lkz_A           92 LEPVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEEP-QLVQSYGW-NIVTMKSGVDVFYR---------PSE  159 (321)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCCC-CCCCBTTG-GGEEEECSCCTTSS---------CCC
T ss_pred             CCCCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccCc-chhhhcCC-cceEEEeccCHhhC---------CCC
Confidence            44667999999999999998887654 45799999865411100 00011221 34778877 76332         136


Q ss_pred             ceeEEEEeCCCcc---------cHHHHHHHHhccCCC-eEEEEe
Q 029803           96 SFDYAFVDADKDN---------YCNYHERLMKLLKVG-GIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d~~~~~---------~~~~~~~~~~~L~~g-G~lv~~  129 (187)
                      ++|+|+||-....         ....++.+.+.|++| |-+++.
T Consensus       160 ~~D~ivcDigeSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~K  203 (321)
T 3lkz_A          160 CCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVK  203 (321)
T ss_dssp             CCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CCCEEEEECccCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEE
Confidence            7999999964221         123556666888888 888873

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.60  E-value=0.00017  Score=54.57  Aligned_cols=57  Identities=11%  Similarity=0.130  Sum_probs=45.7

Q ss_pred             HHHHHHHHH--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC
Q 029803            9 QLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG   68 (187)
Q Consensus         9 ~ll~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   68 (187)
                      +|+..++..  .++..|||.+||+|.++......   +.+++++|+++..++.++++++..+
T Consensus       200 ~l~~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            455555553  46789999999999999887764   5799999999999999999987654

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.55  E-value=0.0001  Score=58.84  Aligned_cols=78  Identities=18%  Similarity=0.035  Sum_probs=46.2

Q ss_pred             CCEEEEEcccccHHHHHHHhh-------------C---CCCCEEEEEeCC-----------cchHHHHHHHHHhcCCCCc
Q 029803           20 AKKTIEIGVFTGYSLLLTALT-------------I---PEDGQITAIDVN-----------RETYEIGLPIIKKAGVDHK   72 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~-------------~---~~~~~v~~iD~~-----------~~~~~~a~~~~~~~~~~~~   72 (187)
                      +.+|+|+||++|..++.+...             .   ++..+|+.-|+-           |...+..++   ..+....
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence            568999999999999987765             1   235678888875           222222211   1222112


Q ss_pred             EEEEEcchHHHHHHHhhcccCCCceeEEEEeC
Q 029803           73 INFIESEALSVLDQLLKYSENEGSFDYAFVDA  104 (187)
Q Consensus        73 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~  104 (187)
                      ..++.+....+..++    ...+++|+|+...
T Consensus       130 ~~f~~gvpgSFy~rl----fp~~S~d~v~Ss~  157 (384)
T 2efj_A          130 SCLIGAMPGSFYSRL----FPEESMHFLHSCY  157 (384)
T ss_dssp             SEEEEECCSCTTSCC----SCTTCEEEEEEES
T ss_pred             ceEEEecchhhhhcc----CCCCceEEEEecc
Confidence            345555554443333    2358999999873

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.53  E-value=0.00031  Score=56.63  Aligned_cols=49  Identities=16%  Similarity=0.196  Sum_probs=43.2

Q ss_pred             cCCCEEEEEcccccHHHHHHH-hhCCCCCEEEEEeCCcchHHHHHHHHHh
Q 029803           18 VNAKKTIEIGVFTGYSLLLTA-LTIPEDGQITAIDVNRETYEIGLPIIKK   66 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la-~~~~~~~~v~~iD~~~~~~~~a~~~~~~   66 (187)
                      .++..++|||++.|..++.++ ...++.++|+++|++|...+..+++++.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            577899999999999999988 4554348999999999999999999987

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.47  E-value=0.00079  Score=57.54  Aligned_cols=108  Identities=16%  Similarity=0.115  Sum_probs=71.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhC-------C----CCCEEEEEeC---CcchHH-----------HHHHHHHhcCC-----
Q 029803           20 AKKTIEIGVFTGYSLLLTALTI-------P----EDGQITAIDV---NRETYE-----------IGLPIIKKAGV-----   69 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~-------~----~~~~v~~iD~---~~~~~~-----------~a~~~~~~~~~-----   69 (187)
                      .-+|+|+|-|+|.+.+......       |    ...+++++|.   +++.+.           .+++.++.+..     
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            3589999999999877766543       1    1246899998   444333           22233333321     


Q ss_pred             --------CCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-----cc-cHHHHHHHHhccCCCeEEEEe
Q 029803           70 --------DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----DN-YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        70 --------~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-----~~-~~~~~~~~~~~L~~gG~lv~~  129 (187)
                              .-.++++.+|+.+.++++...  ....||.+|+|+-.     +. ...+++.+.++++|||.+...
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~--~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~  218 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDS--LNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATF  218 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGG--GTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccc--cCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEec
Confidence                    023568889999988765210  13679999999732     21 357899999999999998763

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.45  E-value=1.6e-05  Score=62.98  Aligned_cols=107  Identities=12%  Similarity=0.078  Sum_probs=68.5

Q ss_pred             CCEEEEEcccccHHHHHHHhh---------------CCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803           20 AKKTIEIGVFTGYSLLLTALT---------------IPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~---------------~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      +-+|+|+||++|..++.+...               -++..+|+.-|+.......+-+.+.......+..++.+....+.
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            357999999999988876654               23467899999887777766665543211112344444443333


Q ss_pred             HHHhhcccCCCceeEEEEeC---CCc---------------------------------ccHHHHHHHHhccCCCeEEEE
Q 029803           85 DQLLKYSENEGSFDYAFVDA---DKD---------------------------------NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~---~~~---------------------------------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .++    ...+++|+|+...   |..                                 +...+++.-.+.|+|||.+++
T Consensus       132 ~rl----fp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl  207 (359)
T 1m6e_X          132 GRL----FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL  207 (359)
T ss_dssp             SCC----SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred             hcc----CCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence            333    2358999999763   100                                 112357777899999999998


Q ss_pred             eC
Q 029803          129 DN  130 (187)
Q Consensus       129 ~~  130 (187)
                      .-
T Consensus       208 ~~  209 (359)
T 1m6e_X          208 TI  209 (359)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.43  E-value=9.8e-05  Score=58.77  Aligned_cols=39  Identities=10%  Similarity=0.162  Sum_probs=27.6

Q ss_pred             CCEEEEEcccccHHHHHHHhh--------C------CCCCEEEEEeCCcchHH
Q 029803           20 AKKTIEIGVFTGYSLLLTALT--------I------PEDGQITAIDVNRETYE   58 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~--------~------~~~~~v~~iD~~~~~~~   58 (187)
                      +.+|+|+||++|..++.+...        .      ++..+|..-|+-.....
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn  105 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFN  105 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchH
Confidence            468999999999999887321        1      23677888887555443

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=97.37  E-value=0.00065  Score=53.80  Aligned_cols=103  Identities=18%  Similarity=0.273  Sum_probs=67.4

Q ss_pred             HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +..++++||.+|+|. |..++.+|+... ..+|+++|.+++..+.+++.    +...-+.....+..+.+..+.     .
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~G-a~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~~~-----~  256 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQL----GATHVINSKTQDPVAAIKEIT-----D  256 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT-----T
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHHc----CCCEEecCCccCHHHHHHHhc-----C
Confidence            355778999999875 778888888753 23799999999888877643    432111111123333333321     2


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +.+|+||-...   ....++.+++.|+++|.++.-..
T Consensus       257 gg~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          257 GGVNFALESTG---SPEILKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             SCEEEEEECSC---CHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCcEEEECCC---CHHHHHHHHHHHhcCCEEEEeCC
Confidence            37998875432   24567888999999999987543

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=97.36  E-value=0.00038  Score=50.04  Aligned_cols=100  Identities=14%  Similarity=0.060  Sum_probs=62.4

Q ss_pred             HcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           17 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ..++++||.+|+  |.|.....++...  +.+|+++|.+++..+.+++    .+....+.....+..+.+....    ..
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~----~~  105 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSR----LGVEYVGDSRSVDFADEILELT----DG  105 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHT----TCCSEEEETTCSTHHHHHHHHT----TT
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEeeCCcHHHHHHHHHHh----CC
Confidence            456789999994  5677777777653  5799999998877665543    3432111111122223232221    12


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+|+++....    ...++.+++.|+++|.++.-.
T Consensus       106 ~~~D~vi~~~g----~~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          106 YGVDVVLNSLA----GEAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             CCEEEEEECCC----THHHHHHHHTEEEEEEEEECS
T ss_pred             CCCeEEEECCc----hHHHHHHHHHhccCCEEEEEc
Confidence            46999886543    256788899999999998743

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=97.34  E-value=0.001  Score=51.99  Aligned_cols=101  Identities=13%  Similarity=0.169  Sum_probs=68.5

Q ss_pred             HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +..++++||-+|+|. |..++.+++..  +.+|+++|.+++..+.+++    .+...-+.....+..+.+...      .
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~------~  230 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAM--GLRVAAVDIDDAKLNLARR----LGAEVAVNARDTDPAAWLQKE------I  230 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH------H
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHH----cCCCEEEeCCCcCHHHHHHHh------C
Confidence            456778999999874 88999999886  5699999999988877654    343221111112333333321      2


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +.+|.+|....   ....++.+++.|+++|.++.-..
T Consensus       231 g~~d~vid~~g---~~~~~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          231 GGAHGVLVTAV---SPKAFSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             SSEEEEEESSC---CHHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCEEEEeCC---CHHHHHHHHHHhccCCEEEEeCC
Confidence            47998876532   34577888999999999987543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=97.25  E-value=0.0011  Score=52.97  Aligned_cols=106  Identities=16%  Similarity=0.140  Sum_probs=67.9

Q ss_pred             HHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch-HHHHHHHhhccc
Q 029803           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSE   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~   92 (187)
                      .+..++++||.+|+|. |..++.+|+... ..+|+++|.+++.++.+++    .+. ..+.....+. .+.+..+.    
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa-~~i~~~~~~~~~~~~~~~~----  250 (398)
T 2dph_A          181 AGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLSD----AGF-ETIDLRNSAPLRDQIDQIL----  250 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHT----TTC-EEEETTSSSCHHHHHHHHH----
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCC-cEEcCCCcchHHHHHHHHh----
Confidence            3456788999999875 788888888753 2399999999988776653    343 1111111232 33333332    


Q ss_pred             CCCceeEEEEeCCCcc-----------cHHHHHHHHhccCCCeEEEEeC
Q 029803           93 NEGSFDYAFVDADKDN-----------YCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~-----------~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ....+|+||-......           ....++.+++.|+++|.+++-.
T Consensus       251 ~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G  299 (398)
T 2dph_A          251 GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG  299 (398)
T ss_dssp             SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred             CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence            1237998875433221           1346788899999999998644

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=97.23  E-value=0.0008  Score=51.51  Aligned_cols=88  Identities=15%  Similarity=0.197  Sum_probs=58.6

Q ss_pred             CCCEEEEEcc------cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           19 NAKKTIEIGV------FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        19 ~~~~vLeiG~------g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .+.+|||+|+      ..|.+  .+.+..|.++.|+++|+.+-..           ..+  .++++|..+..        
T Consensus       109 ~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s-----------da~--~~IqGD~~~~~--------  165 (344)
T 3r24_A          109 YNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS-----------DAD--STLIGDCATVH--------  165 (344)
T ss_dssp             TTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC-----------SSS--EEEESCGGGEE--------
T ss_pred             CCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc-----------CCC--eEEEccccccc--------
Confidence            5679999996      56663  3344455346999999976421           112  44999964421        


Q ss_pred             CCCceeEEEEeCCCc--------c------cHHHHHHHHhccCCCeEEEEe
Q 029803           93 NEGSFDYAFVDADKD--------N------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~--------~------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...+||+|++|-.+.        .      ....++-+.+.|+|||.+++.
T Consensus       166 ~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK  216 (344)
T 3r24_A          166 TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK  216 (344)
T ss_dssp             ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE
Confidence            147899999994221        1      234566677899999999996

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=97.23  E-value=0.0018  Score=50.84  Aligned_cols=105  Identities=16%  Similarity=0.212  Sum_probs=68.1

Q ss_pred             HHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      .+..++++||-+|+|. |..++.+|+... ..+|+++|.+++.++.+++.    +...-+.....+..+.+..+.    .
T Consensus       162 ~~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~l----Ga~~vi~~~~~~~~~~v~~~t----~  232 (352)
T 3fpc_A          162 ANIKLGDTVCVIGIGPVGLMSVAGANHLG-AGRIFAVGSRKHCCDIALEY----GATDIINYKNGDIVEQILKAT----D  232 (352)
T ss_dssp             TTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSSEEEECCCHHHHHHHHHH----TCCEEECGGGSCHHHHHHHHT----T
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHh----CCceEEcCCCcCHHHHHHHHc----C
Confidence            4456788999999874 778888888753 23899999998888777653    432111111233333333331    2


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ...+|+||-....   ...++.+++.|+++|.++.-..
T Consensus       233 g~g~D~v~d~~g~---~~~~~~~~~~l~~~G~~v~~G~  267 (352)
T 3fpc_A          233 GKGVDKVVIAGGD---VHTFAQAVKMIKPGSDIGNVNY  267 (352)
T ss_dssp             TCCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCCEEEECCCC---hHHHHHHHHHHhcCCEEEEecc
Confidence            3479988753322   2467788899999999987543

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=97.22  E-value=0.003  Score=49.68  Aligned_cols=103  Identities=13%  Similarity=0.062  Sum_probs=67.3

Q ss_pred             HHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc---hHHHHHHHhhc
Q 029803           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLKY   90 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~   90 (187)
                      .+..++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .+..   .++..+   ..+....+...
T Consensus       167 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~  238 (356)
T 1pl8_A          167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQ  238 (356)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHHH
Confidence            3456788999999874 788888888763 2389999999887777653    3432   223222   22333332211


Q ss_pred             ccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           91 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                       . ...+|+||-...   ....++.+++.|+++|.++.-.
T Consensus       239 -~-~~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          239 -L-GCKPEVTIECTG---AEASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             -H-TSCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECS
T ss_pred             -h-CCCCCEEEECCC---ChHHHHHHHHHhcCCCEEEEEe
Confidence             0 257998875432   2346778889999999998744

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=97.19  E-value=0.015  Score=40.22  Aligned_cols=113  Identities=12%  Similarity=0.125  Sum_probs=73.9

Q ss_pred             HHHHHHHHHcC--CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            9 QLMAMLLRLVN--AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         9 ~ll~~l~~~~~--~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      ..|...+....  +.-|||+|-|.|.+=-.+...+| +.+|+.+|-.-..-.        ...++.-.++.||+.+.++.
T Consensus        28 ~~L~~a~~~v~~~~GpVlElGLGNGRTydHLRe~~P-~R~I~vfDR~~~~hp--------~~~P~~e~~ilGdi~~tL~~   98 (174)
T 3iht_A           28 ACLEHAIAQTAGLSGPVYELGLGNGRTYHHLRQHVQ-GREIYVFERAVASHP--------DSTPPEAQLILGDIRETLPA   98 (174)
T ss_dssp             HHHHHHHHHTTTCCSCEEEECCTTCHHHHHHHHHCC-SSCEEEEESSCCCCG--------GGCCCGGGEEESCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCceEEecCCCChhHHHHHHhCC-CCcEEEEEeeeccCC--------CCCCchHheecccHHHHHHH
Confidence            34444444333  34699999999999999999998 899999996422110        11234467999999998876


Q ss_pred             HhhcccCCCceeEEEEeCCCccc---HHH----HHHHHhccCCCeEEEEeCCC
Q 029803           87 LLKYSENEGSFDYAFVDADKDNY---CNY----HERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~~~~~---~~~----~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ....  -+.+.-++..|....+.   ..+    -..+.++|.|||+++...-+
T Consensus        99 ~~~r--~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS~~pl  149 (174)
T 3iht_A           99 TLER--FGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVSSDRM  149 (174)
T ss_dssp             HHHH--HCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEESSCC
T ss_pred             HHHh--cCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEeCCcc
Confidence            3210  04567777777432221   111    22234799999999987665

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=97.11  E-value=0.0079  Score=46.91  Aligned_cols=104  Identities=16%  Similarity=0.098  Sum_probs=69.0

Q ss_pred             HHcCCCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ...++++||-+|+|.+ ..+..+++... +.+|+++|.+++.++.+++    .+...-+.....|..+.+..+.    ..
T Consensus       160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~-g~~Vi~~~~~~~r~~~~~~----~Ga~~~i~~~~~~~~~~v~~~t----~g  230 (348)
T 4eez_A          160 GVKPGDWQVIFGAGGLGNLAIQYAKNVF-GAKVIAVDINQDKLNLAKK----IGADVTINSGDVNPVDEIKKIT----GG  230 (348)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHHH----TTCSEEEEC-CCCHHHHHHHHT----TS
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHHHhC-CCEEEEEECcHHHhhhhhh----cCCeEEEeCCCCCHHHHhhhhc----CC
Confidence            4567789999998754 46666666554 6899999999987766554    3443323334445555444442    23


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..+|.++.+.   .....+..+++.++++|.+++-..
T Consensus       231 ~g~d~~~~~~---~~~~~~~~~~~~l~~~G~~v~~g~  264 (348)
T 4eez_A          231 LGVQSAIVCA---VARIAFEQAVASLKPMGKMVAVAV  264 (348)
T ss_dssp             SCEEEEEECC---SCHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCceEEEEec---cCcchhheeheeecCCceEEEEec
Confidence            4688887764   234567888899999999987543

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=97.09  E-value=0.0062  Score=47.50  Aligned_cols=106  Identities=20%  Similarity=0.127  Sum_probs=69.5

Q ss_pred             HHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ....++++||-+|+|. |..++.+|+... ...++++|.+++.++.+++    +|...-+.....+..+....+..    
T Consensus       156 ~~~~~g~~VlV~GaG~vG~~aiq~ak~~G-~~~vi~~~~~~~k~~~a~~----lGa~~~i~~~~~~~~~~~~~~~~----  226 (346)
T 4a2c_A          156 AQGCENKNVIIIGAGTIGLLAIQCAVALG-AKSVTAIDISSEKLALAKS----FGAMQTFNSSEMSAPQMQSVLRE----  226 (346)
T ss_dssp             TTCCTTSEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHGG----
T ss_pred             hccCCCCEEEEECCCCcchHHHHHHHHcC-CcEEEEEechHHHHHHHHH----cCCeEEEeCCCCCHHHHHHhhcc----
Confidence            3456788999999864 567777888765 4578899999988777664    45432222222344444444321    


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ...+|+|+-..   .....++.++++++++|.+++-...
T Consensus       227 ~~g~d~v~d~~---G~~~~~~~~~~~l~~~G~~v~~g~~  262 (346)
T 4a2c_A          227 LRFNQLILETA---GVPQTVELAVEIAGPHAQLALVGTL  262 (346)
T ss_dssp             GCSSEEEEECS---CSHHHHHHHHHHCCTTCEEEECCCC
T ss_pred             cCCcccccccc---cccchhhhhhheecCCeEEEEEecc
Confidence            35688777543   2345778889999999999985544

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=97.09  E-value=0.0029  Score=49.50  Aligned_cols=103  Identities=14%  Similarity=0.112  Sum_probs=69.3

Q ss_pred             HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ...++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .|... +--...+..+.+..+.    ..
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g-~~~Vi~~~~~~~~~~~~~~----lGa~~-~i~~~~~~~~~v~~~t----~g  237 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVS-AARVIAVDLDDDRLALARE----VGADA-AVKSGAGAADAIRELT----GG  237 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESCHHHHHHHHH----TTCSE-EEECSTTHHHHHHHHH----GG
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----cCCCE-EEcCCCcHHHHHHHHh----CC
Confidence            456788999999864 778888888764 5799999999988887764    35332 1111223333333332    12


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..+|+||-..   .....++.+++.|+++|.++.-..
T Consensus       238 ~g~d~v~d~~---G~~~~~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          238 QGATAVFDFV---GAQSTIDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             GCEEEEEESS---CCHHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCeEEEECC---CCHHHHHHHHHHHhcCCEEEEECC
Confidence            4799887543   234477888999999999988543

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=97.06  E-value=0.0021  Score=50.88  Aligned_cols=108  Identities=12%  Similarity=0.089  Sum_probs=69.1

Q ss_pred             HHHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           14 LLRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      ..+..++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .|...-+.....+..+.+......  
T Consensus       177 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~i~~~~~~--  249 (370)
T 4ej6_A          177 LSGIKAGSTVAILGGGVIGLLTVQLARLAG-ATTVILSTRQATKRRLAEE----VGATATVDPSAGDVVEAIAGPVGL--  249 (370)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHH----HTCSEEECTTSSCHHHHHHSTTSS--
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH----cCCCEEECCCCcCHHHHHHhhhhc--
Confidence            34566788999999864 778888888764 3489999999988877765    343321111122333333320000  


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..+.+|+||-..   .....++.+++.|+++|.+++-..
T Consensus       250 ~~gg~Dvvid~~---G~~~~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          250 VPGGVDVVIECA---GVAETVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             STTCEEEEEECS---CCHHHHHHHHHHEEEEEEEEECSC
T ss_pred             cCCCCCEEEECC---CCHHHHHHHHHHhccCCEEEEEec
Confidence            124799887532   234577888999999999988543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=97.02  E-value=0.0087  Score=46.90  Aligned_cols=106  Identities=11%  Similarity=0.063  Sum_probs=66.4

Q ss_pred             HHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhccc
Q 029803           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSE   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~   92 (187)
                      .+..++++||-+|+|. |..++.+|+..  +.+|+++|.+++..+.+++    .+...-+.... .+..+.+...... .
T Consensus       164 ~~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~~i~~~~~~-~  236 (352)
T 1e3j_A          164 AGVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN----CGADVTLVVDPAKEEESSIIERIRS-A  236 (352)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEECCTTTSCHHHHHHHHHH-H
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEcCCHHHHHHHHH----hCCCEEEcCcccccHHHHHHHHhcc-c
Confidence            3456788999999864 77788888875  4679999999988877653    34331111110 2323333322110 0


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ....+|+||-...   ....++.+++.|+++|.++.-.
T Consensus       237 ~g~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~G  271 (352)
T 1e3j_A          237 IGDLPNVTIDCSG---NEKCITIGINITRTGGTLMLVG  271 (352)
T ss_dssp             SSSCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECS
T ss_pred             cCCCCCEEEECCC---CHHHHHHHHHHHhcCCEEEEEe
Confidence            0247998875432   2346778889999999998743

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.01  E-value=0.026  Score=43.64  Aligned_cols=111  Identities=8%  Similarity=0.006  Sum_probs=72.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC--CCcEEEEEcchHH-HHHHHhhcccCCC
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--DHKINFIESEALS-VLDQLLKYSENEG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--~~~~~~~~~d~~~-~~~~~~~~~~~~~   95 (187)
                      .+..||++|||.-.....+.  .+++.+++-+| .|+.++..++.+...+.  ..+..++.+|..+ +...+...+....
T Consensus       102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~  178 (310)
T 2uyo_A          102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  178 (310)
T ss_dssp             TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCC
Confidence            46789999997666543333  24357999999 59999999999876442  4578889999865 3333322211112


Q ss_pred             ceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           96 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        96 ~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ..-++++.+     ..+....+++.+...+.||+.|+++...
T Consensus       179 ~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          179 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            233444433     2234456788888888999999998654

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=96.99  E-value=0.0039  Score=49.16  Aligned_cols=101  Identities=16%  Similarity=0.095  Sum_probs=66.6

Q ss_pred             HHHcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           15 LRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .+..++++||-+|  .|.|..++.+++..  +.+|++++.+++.++.+++    .+...-+.....+..+.+...     
T Consensus       159 ~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~~~~~-----  227 (362)
T 2c0c_A          159 GGLSEGKKVLVTAAAGGTGQFAMQLSKKA--KCHVIGTCSSDEKSAFLKS----LGCDRPINYKTEPVGTVLKQE-----  227 (362)
T ss_dssp             TCCCTTCEEEETTTTBTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH-----
T ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHH----cCCcEEEecCChhHHHHHHHh-----
Confidence            3456788999999  56788888888875  5699999999887777664    343211111112333333332     


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ....+|+||-....    ..++.+++.|+++|.++.-.
T Consensus       228 ~~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          228 YPEGVDVVYESVGG----AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             CTTCEEEEEECSCT----HHHHHHHHHEEEEEEEEECC
T ss_pred             cCCCCCEEEECCCH----HHHHHHHHHHhcCCEEEEEe
Confidence            13579988764432    46788899999999988743

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.95  E-value=0.0063  Score=48.54  Aligned_cols=106  Identities=14%  Similarity=0.103  Sum_probs=67.8

Q ss_pred             HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc-hHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~~   93 (187)
                      +..++++||-+|+|. |..++.+|+... ..+|+++|.+++.++.+++    .|.. .+.....+ ..+.+..+.    .
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~~----lGa~-~i~~~~~~~~~~~v~~~t----~  251 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKA----QGFE-IADLSLDTPLHEQIAALL----G  251 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHH----TTCE-EEETTSSSCHHHHHHHHH----S
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHHH----cCCc-EEccCCcchHHHHHHHHh----C
Confidence            456778999999864 788888998764 3389999999988887754    3431 11111112 233333331    1


Q ss_pred             CCceeEEEEeCCCcc------------cHHHHHHHHhccCCCeEEEEeCC
Q 029803           94 EGSFDYAFVDADKDN------------YCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~------------~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ...+|+||-......            ....++.+++.|+++|.+++-..
T Consensus       252 g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          252 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             SSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            247998875432221            22467888999999999987543

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=96.94  E-value=0.011  Score=46.47  Aligned_cols=106  Identities=10%  Similarity=0.001  Sum_probs=68.3

Q ss_pred             HHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhcc
Q 029803           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYS   91 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~   91 (187)
                      .+..++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++. .    ..-+....  .+..+....+.+. 
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~l-~----~~~~~~~~~~~~~~~~~~~v~~~-  247 (363)
T 3m6i_A          175 AGVRLGDPVLICGAGPIGLITMLCAKAAG-ACPLVITDIDEGRLKFAKEI-C----PEVVTHKVERLSAEESAKKIVES-  247 (363)
T ss_dssp             HTCCTTCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESCHHHHHHHHHH-C----TTCEEEECCSCCHHHHHHHHHHH-
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHh-c----hhcccccccccchHHHHHHHHHH-
Confidence            4466788999999864 778888888763 23499999999998888865 2    11222221  1122222222211 


Q ss_pred             cCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .....+|+||-...   ....++.+++.|+++|.++.-.
T Consensus       248 t~g~g~Dvvid~~g---~~~~~~~~~~~l~~~G~iv~~G  283 (363)
T 3m6i_A          248 FGGIEPAVALECTG---VESSIAAAIWAVKFGGKVFVIG  283 (363)
T ss_dssp             TSSCCCSEEEECSC---CHHHHHHHHHHSCTTCEEEECC
T ss_pred             hCCCCCCEEEECCC---ChHHHHHHHHHhcCCCEEEEEc
Confidence            12357998875432   3346788889999999998754

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.90  E-value=0.0026  Score=49.57  Aligned_cols=102  Identities=13%  Similarity=0.090  Sum_probs=66.8

Q ss_pred             HHHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           15 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .+..++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+.+   ..+...-+.....+..+.+...     
T Consensus       145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~-----  214 (336)
T 4b7c_A          145 GQPKNGETVVISGAAGAVGSVAGQIARLK--GCRVVGIAGGAEKCRFLVE---ELGFDGAIDYKNEDLAAGLKRE-----  214 (336)
T ss_dssp             TCCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH---TTCCSEEEETTTSCHHHHHHHH-----
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH---HcCCCEEEECCCHHHHHHHHHh-----
Confidence            34667889999997  5678888888775  5699999999887776632   2343211111122333333332     


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+.+|++|-...    ...++.+++.|+++|.++.-.
T Consensus       215 ~~~~~d~vi~~~g----~~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          215 CPKGIDVFFDNVG----GEILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             CTTCEEEEEESSC----HHHHHHHHTTEEEEEEEEECC
T ss_pred             cCCCceEEEECCC----cchHHHHHHHHhhCCEEEEEe
Confidence            1357998876433    246788899999999998743

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.90  E-value=0.012  Score=46.42  Aligned_cols=97  Identities=18%  Similarity=0.195  Sum_probs=65.7

Q ss_pred             HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +..++.+||-+|+|. |..++.+|+..  +.+|++++.+++.++.+++    .+..   .++.....+....+      .
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~--Ga~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~------~  255 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA----LGAD---EVVNSRNADEMAAH------L  255 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH----HTCS---EEEETTCHHHHHTT------T
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCc---EEeccccHHHHHHh------h
Confidence            456778999999874 77888888875  5689999999998888775    2432   22322222333332      2


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+|+||-......   .++.+++.|+++|.++.-.
T Consensus       256 ~g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          256 KSFDFILNTVAAPH---NLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             TCEEEEEECCSSCC---CHHHHHTTEEEEEEEEECC
T ss_pred             cCCCEEEECCCCHH---HHHHHHHHhccCCEEEEec
Confidence            57998875433222   3567789999999988743

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=96.87  E-value=0.00041  Score=67.15  Aligned_cols=112  Identities=14%  Similarity=0.069  Sum_probs=58.0

Q ss_pred             HHHHHHHH--cCCCEEEEEcccccHHHHHHHhhCCC----CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803           10 LMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPE----DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus        10 ll~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~----~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      ++..+.+.  .+..+|||||.|+|..+..+...+..    ...++..|+++...+.++++++...    ++.-.-|..+.
T Consensus      1229 ~~~~~~~~~~~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~d----i~~~~~d~~~~ 1304 (2512)
T 2vz8_A         1229 CVDTALENMASPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLH----VTQGQWDPANP 1304 (2512)
T ss_dssp             HHHHHHTTSSSSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHT----EEEECCCSSCC
T ss_pred             HHHHHHhcCCCCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcc----ccccccccccc
Confidence            34444443  33568999999999877776666542    2378899999999988888876532    22211111100


Q ss_pred             HHHHhhcccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                       ..+     ...+||+|+....   ..+....++++.++|+|||++++...
T Consensus      1305 -~~~-----~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A         1305 -APG-----SLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp             -CC----------CCEEEEECC--------------------CCEEEEEEC
T ss_pred             -ccC-----CCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence             000     1357999997642   23455678899999999999988654

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.87  E-value=0.0018  Score=51.09  Aligned_cols=102  Identities=17%  Similarity=0.114  Sum_probs=67.4

Q ss_pred             HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~   93 (187)
                      +..++++||-+|+|. |..++.+|+..  +.+|++++.+++.++.+++    .|...-+. .. .+..+.+..+.    .
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~vi~-~~~~~~~~~v~~~~----~  254 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKAT--GAEVIVTSSSREKLDRAFA----LGADHGIN-RLEEDWVERVYALT----G  254 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----HTCSEEEE-TTTSCHHHHHHHHH----T
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEecCchhHHHHHH----cCCCEEEc-CCcccHHHHHHHHh----C
Confidence            355778999999774 77888888875  5699999999888877654    34332121 11 23333333332    2


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ...+|+||-....    ..++.+++.|+++|.++.-...
T Consensus       255 g~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          255 DRGADHILEIAGG----AGLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             TCCEEEEEEETTS----SCHHHHHHHEEEEEEEEEECCC
T ss_pred             CCCceEEEECCCh----HHHHHHHHHhhcCCEEEEEecC
Confidence            3479988865442    2467788999999999875443

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.86  E-value=0.0069  Score=48.47  Aligned_cols=106  Identities=8%  Similarity=0.058  Sum_probs=63.3

Q ss_pred             HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ..++.+||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++.    |...-+.....+..+.+..+.    ...
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~l----Ga~~vi~~~~~~~~~~i~~~t----~g~  281 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAG-ASKVILSEPSEVRRNLAKEL----GADHVIDPTKENFVEAVLDYT----NGL  281 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCHHHHHHHHHH----TCSEEECTTTSCHHHHHHHHT----TTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHc----CCCEEEcCCCCCHHHHHHHHh----CCC
Confidence            45678999999763 677888888763 33999999999888877653    432111111123333333331    234


Q ss_pred             ceeEEEEeCCCc--ccHHHHHHHHhccCCCeEEEEeCC
Q 029803           96 SFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        96 ~~D~i~~d~~~~--~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|+||-.....  .....++.+++.++++|.+++-..
T Consensus       282 g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          282 GAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            799887543332  122233333355599999988543

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.86  E-value=0.0074  Score=47.71  Aligned_cols=100  Identities=16%  Similarity=0.285  Sum_probs=66.1

Q ss_pred             HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-----cchHHHHHHHhh
Q 029803           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-----SEALSVLDQLLK   89 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~~   89 (187)
                      +..++++||-+|+|. |..++.+|+... ..+|+++|.+++.++.+++    .+..   .++.     .+..+.+..+. 
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~~-  259 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV----FGAT---DFVNPNDHSEPISQVLSKMT-  259 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCC---EEECGGGCSSCHHHHHHHHH-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHH----hCCc---eEEeccccchhHHHHHHHHh-
Confidence            345678999999763 777888888763 2389999999998887764    3432   1221     12333333331 


Q ss_pred             cccCCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeCC
Q 029803           90 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  131 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                          .+.+|+||-...   ....++.++++|+++ |.++.-..
T Consensus       260 ----~~g~D~vid~~g---~~~~~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          260 ----NGGVDFSLECVG---NVGVMRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             ----TSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             ----CCCCCEEEECCC---CHHHHHHHHHHhhcCCcEEEEEcC
Confidence                247998875432   245678889999999 99987543

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.83  E-value=0.002  Score=50.21  Aligned_cols=100  Identities=18%  Similarity=0.137  Sum_probs=65.2

Q ss_pred             HcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           17 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ..++++||-+|+  |.|..++.+++..  +.+|++++.+++.++.+++    .+...-+.....+..+.+....    ..
T Consensus       146 ~~~g~~vlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~~~~~~~~~~~~~~~~~~----~~  215 (334)
T 3qwb_A          146 VKKGDYVLLFAAAGGVGLILNQLLKMK--GAHTIAVASTDEKLKIAKE----YGAEYLINASKEDILRQVLKFT----NG  215 (334)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTTSCHHHHHHHHT----TT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCcEEEeCCCchHHHHHHHHh----CC
Confidence            457789999993  5677888888875  5799999999887776654    3432111111123333333331    23


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+|++|-....    ..++.+++.|+++|.++.-.
T Consensus       216 ~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          216 KGVDASFDSVGK----DTFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             SCEEEEEECCGG----GGHHHHHHHEEEEEEEEECC
T ss_pred             CCceEEEECCCh----HHHHHHHHHhccCCEEEEEc
Confidence            579988764432    45777889999999998853

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.83  E-value=0.0035  Score=49.02  Aligned_cols=99  Identities=12%  Similarity=0.123  Sum_probs=65.6

Q ss_pred             HcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           17 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ..++++||-+|+  |.|..++.+++..  +.+|++++.+++..+.+++.    +...-+.. ..+..+.+....    ..
T Consensus       157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----ga~~v~~~-~~~~~~~v~~~~----~~  225 (342)
T 4eye_A          157 LRAGETVLVLGAAGGIGTAAIQIAKGM--GAKVIAVVNRTAATEFVKSV----GADIVLPL-EEGWAKAVREAT----GG  225 (342)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHH----TCSEEEES-STTHHHHHHHHT----TT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc----CCcEEecC-chhHHHHHHHHh----CC
Confidence            457789999996  5688888888875  56999999999988877753    43211111 133333333331    23


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+|++|-....    ..++.+++.|+++|.++.-.
T Consensus       226 ~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          226 AGVDMVVDPIGG----PAFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             SCEEEEEESCC------CHHHHHHTEEEEEEEEEC-
T ss_pred             CCceEEEECCch----hHHHHHHHhhcCCCEEEEEE
Confidence            479988764433    24677889999999998753

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=96.82  E-value=0.024  Score=44.30  Aligned_cols=117  Identities=13%  Similarity=0.178  Sum_probs=75.7

Q ss_pred             HHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC--------------------C
Q 029803           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--------------------V   69 (187)
Q Consensus        10 ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--------------------~   69 (187)
                      ++..++...+...|+.+|||.......+....+ +.+++-+|. |+.++.-++.+...+                    .
T Consensus        88 ~v~~fl~~~~~~qVV~LGaGlDTr~~RL~~~~~-~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~  165 (334)
T 1rjd_A           88 AILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLID  165 (334)
T ss_dssp             HHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEE
T ss_pred             HHHHHHHHCCCcEEEEeCCCCccHHHHhcCcCC-CCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccC
Confidence            334444445668899999999988888876544 567777887 888888777777642                    1


Q ss_pred             CCcEEEEEcchHH--HHHHHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEE-Ee
Q 029803           70 DHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAV-YD  129 (187)
Q Consensus        70 ~~~~~~~~~d~~~--~~~~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv-~~  129 (187)
                      ..+.+++.+|..+  .+..++...+......++++.+     ..+....+++.+.... |+|.++ ++
T Consensus       166 ~~~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e  232 (334)
T 1rjd_A          166 QGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYD  232 (334)
T ss_dssp             CSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEE
T ss_pred             CCceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEe
Confidence            3578999999875  3333222211124556666665     2344556777777776 566654 44

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.82  E-value=0.0057  Score=48.34  Aligned_cols=99  Identities=14%  Similarity=0.251  Sum_probs=65.9

Q ss_pred             HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-----cchHHHHHHHhh
Q 029803           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-----SEALSVLDQLLK   89 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~~   89 (187)
                      +..++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .+..   .++.     .+..+.+..+. 
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~~~t-  258 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIE----LGAT---ECLNPKDYDKPIYEVICEKT-  258 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHHT-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHHH----cCCc---EEEecccccchHHHHHHHHh-
Confidence            455778999999763 677888888753 2389999999998887764    3432   1222     12333333331 


Q ss_pred             cccCCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeC
Q 029803           90 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDN  130 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~  130 (187)
                          .+.+|+||-...   ....++.+++.|+++ |.++.-.
T Consensus       259 ----~gg~Dvvid~~g---~~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          259 ----NGGVDYAVECAG---RIETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             ----TSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECC
T ss_pred             ----CCCCCEEEECCC---CHHHHHHHHHHHhcCCCEEEEEc
Confidence                247998875432   245678889999999 9998754

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.80  E-value=0.0077  Score=47.64  Aligned_cols=102  Identities=20%  Similarity=0.249  Sum_probs=65.7

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~   93 (187)
                      ..++++||-+|+| .|..++.+|+... ..+|+++|.+++..+.+++    .+...-+....  .+..+.+..+.     
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~v~~~~-----  262 (376)
T 1e3i_A          193 VTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKA----LGATDCLNPRELDKPVQDVITELT-----  262 (376)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCSEEECGGGCSSCHHHHHHHHH-----
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCcEEEccccccchHHHHHHHHh-----
Confidence            4567899999976 3778888888763 2389999999998887754    34321111110  12333333331     


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeCC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  131 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                      .+.+|+||-...   ....++.+++.|+++ |.++.-..
T Consensus       263 ~~g~Dvvid~~G---~~~~~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          263 AGGVDYSLDCAG---TAQTLKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             TSCBSEEEESSC---CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             CCCccEEEECCC---CHHHHHHHHHHhhcCCCEEEEECC
Confidence            247998875332   245678889999999 99987543

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=96.78  E-value=0.004  Score=48.58  Aligned_cols=102  Identities=15%  Similarity=0.026  Sum_probs=65.3

Q ss_pred             HHcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      +..++++||-+|+|  .|..++.+++..  +.+|++++.+++.++.+++.    +...-+.....+..+.+..+.    .
T Consensus       141 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~l----ga~~~~~~~~~~~~~~~~~~~----~  210 (340)
T 3gms_A          141 NLQRNDVLLVNACGSAIGHLFAQLSQIL--NFRLIAVTRNNKHTEELLRL----GAAYVIDTSTAPLYETVMELT----N  210 (340)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHH----TCSEEEETTTSCHHHHHHHHT----T
T ss_pred             ccCCCCEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhC----CCcEEEeCCcccHHHHHHHHh----C
Confidence            45677899999986  677888888865  57999999999988887753    432111111123333333331    2


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ...+|++|-.....    ......+.|+++|.++.-..
T Consensus       211 ~~g~Dvvid~~g~~----~~~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          211 GIGADAAIDSIGGP----DGNELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             TSCEEEEEESSCHH----HHHHHHHTEEEEEEEEECCC
T ss_pred             CCCCcEEEECCCCh----hHHHHHHHhcCCCEEEEEee
Confidence            35799887643222    22344589999999988543

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=96.76  E-value=0.0029  Score=49.05  Aligned_cols=100  Identities=8%  Similarity=0.014  Sum_probs=65.4

Q ss_pred             HcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           17 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ..++++||-+|  .+.|..+..+++..  +.+|++++.+++.++.+++.    +...-+.....+..+.+....    ..
T Consensus       138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----Ga~~~~~~~~~~~~~~~~~~~----~~  207 (325)
T 3jyn_A          138 VKPGEIILFHAAAGGVGSLACQWAKAL--GAKLIGTVSSPEKAAHAKAL----GAWETIDYSHEDVAKRVLELT----DG  207 (325)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT----TT
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----CCCEEEeCCCccHHHHHHHHh----CC
Confidence            45678999998  35678888888875  56999999999888877642    432111111123333333331    23


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+|++|-....    ..++.+++.|+++|.++.-.
T Consensus       208 ~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          208 KKCPVVYDGVGQ----DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             CCEEEEEESSCG----GGHHHHHTTEEEEEEEEECC
T ss_pred             CCceEEEECCCh----HHHHHHHHHhcCCCEEEEEe
Confidence            579988764332    35678889999999998854

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=96.76  E-value=0.0033  Score=48.91  Aligned_cols=100  Identities=13%  Similarity=0.159  Sum_probs=64.5

Q ss_pred             HcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           17 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ..++++||-+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .+....+.....+..+.+....    ..
T Consensus       143 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~i~~~~----~~  212 (333)
T 1wly_A          143 VKPGDYVLIHAAAGGMGHIMVPWARHL--GATVIGTVSTEEKAETARK----LGCHHTINYSTQDFAEVVREIT----GG  212 (333)
T ss_dssp             CCTTCEEEETTTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHH----TT
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCCHHHHHHHHHHh----CC
Confidence            456789999994  6778888888765  5799999999887777754    2322111111122223333221    12


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+|++|-....    ..++.+++.|+++|.++.-.
T Consensus       213 ~~~d~vi~~~g~----~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          213 KGVDVVYDSIGK----DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             CCEEEEEECSCT----TTHHHHHHTEEEEEEEEECC
T ss_pred             CCCeEEEECCcH----HHHHHHHHhhccCCEEEEEe
Confidence            479988865433    45678889999999998743

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.76  E-value=0.0042  Score=48.28  Aligned_cols=100  Identities=11%  Similarity=0.087  Sum_probs=64.2

Q ss_pred             HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhccc
Q 029803           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSE   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~   92 (187)
                      +..++++||-.|+  |.|..+..+++..  +.+|+++|.+++.++.+++    .+....+.... .+..+.+....    
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~--G~~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~----  211 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKAS----  211 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHHC----
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCcEEEecCCHHHHHHHHHHHh----
Confidence            3456789999997  6677777777764  5699999998887776632    23321111111 23333333331    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                       .+.+|+++.....    ..++.+++.|+++|.+++-.
T Consensus       212 -~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          212 -PDGYDCYFDNVGG----EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             -TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred             -CCCCeEEEECCCh----HHHHHHHHHHhcCCEEEEEe
Confidence             2479988865432    35788889999999998743

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.74  E-value=0.0075  Score=47.61  Aligned_cols=100  Identities=17%  Similarity=0.313  Sum_probs=65.9

Q ss_pred             HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-----cchHHHHHHHhh
Q 029803           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-----SEALSVLDQLLK   89 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~~   89 (187)
                      +..++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++.    +..   .++.     .+..+.+..+. 
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~G-a~~Vi~~~~~~~~~~~~~~l----Ga~---~vi~~~~~~~~~~~~v~~~~-  257 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEF----GAT---ECINPQDFSKPIQEVLIEMT-  257 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHH----TCS---EEECGGGCSSCHHHHHHHHT-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHc----CCc---eEeccccccccHHHHHHHHh-
Confidence            345678999999764 677788888753 23899999999988887643    432   1221     12333333331 


Q ss_pred             cccCCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeCC
Q 029803           90 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  131 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                          .+.+|+||-...   ....++.+++.|+++ |.++.-..
T Consensus       258 ----~~g~D~vid~~g---~~~~~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          258 ----DGGVDYSFECIG---NVKVMRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             ----TSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             ----CCCCCEEEECCC---cHHHHHHHHHhhccCCcEEEEEec
Confidence                247998875432   235678889999999 99987543

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.012  Score=45.98  Aligned_cols=102  Identities=15%  Similarity=0.080  Sum_probs=66.1

Q ss_pred             HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEE-EcchHHHHHHHhhccc
Q 029803           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI-ESEALSVLDQLLKYSE   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~   92 (187)
                      +..++++||.+|+  |.|..+..+++..  +.+|++++.+++..+.+++    .+....+... ..+..+.+....    
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~V~~~~~~~~~~~~~~~----~g~~~~~d~~~~~~~~~~~~~~~----  235 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAM--GYRVLGIDGGEGKEELFRS----IGGEVFIDFTKEKDIVGAVLKAT----  235 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECSTTHHHHHHH----TTCCEEEETTTCSCHHHHHHHHH----
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHC--CCcEEEEcCCHHHHHHHHH----cCCceEEecCccHhHHHHHHHHh----
Confidence            3457789999998  5777778888764  5699999998887766654    3432111111 123333333321    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                       .+.+|+++....   ....++.+++.|+++|.++.-..
T Consensus       236 -~~~~D~vi~~~g---~~~~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          236 -DGGAHGVINVSV---SEAAIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             -TSCEEEEEECSS---CHHHHHHHTTSEEEEEEEEECCC
T ss_pred             -CCCCCEEEECCC---cHHHHHHHHHHHhcCCEEEEEeC
Confidence             127998886543   23567888999999999987543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.72  E-value=0.0078  Score=47.58  Aligned_cols=100  Identities=14%  Similarity=0.289  Sum_probs=65.9

Q ss_pred             HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-----cchHHHHHHHhh
Q 029803           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-----SEALSVLDQLLK   89 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~~   89 (187)
                      +..++++||-+|+|. |..++.+|+... ..+|+++|.+++..+.+++    .+..   .++.     .+..+.+..+. 
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~G-a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~~~~~-  258 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKE----VGAT---ECVNPQDYKKPIQEVLTEMS-  258 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH----TTCS---EEECGGGCSSCHHHHHHHHT-
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----hCCc---eEecccccchhHHHHHHHHh-
Confidence            345778999999764 777888888763 2389999999998887753    3432   1221     12333333331 


Q ss_pred             cccCCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeCC
Q 029803           90 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  131 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                          .+.+|+||-...   ....++.+++.|+++ |.++.-..
T Consensus       259 ----~~g~D~vid~~g---~~~~~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          259 ----NGGVDFSFEVIG---RLDTMVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             ----TSCBSEEEECSC---CHHHHHHHHHHBCTTTCEEEECSC
T ss_pred             ----CCCCcEEEECCC---CHHHHHHHHHHhhcCCcEEEEecc
Confidence                247998875432   235678888999999 99987543

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.71  E-value=0.0049  Score=48.83  Aligned_cols=103  Identities=20%  Similarity=0.284  Sum_probs=67.3

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEE--EcchHHHHHHHhhccc
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFI--ESEALSVLDQLLKYSE   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~~~~   92 (187)
                      +..++++||-+|+| .|..++.+|+... ..+|+++|.+++.++.+++    .|...-+...  ..+..+.+..+.    
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~G-a~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~i~~~~----  260 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAG-ASRIIGIDIDSKKYETAKK----FGVNEFVNPKDHDKPIQEVIVDLT----  260 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHT-CSCEEEECSCTTHHHHHHT----TTCCEEECGGGCSSCHHHHHHHHT----
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHH----cCCcEEEccccCchhHHHHHHHhc----
Confidence            35577899999986 4778888888753 2389999999998887653    3432211111  123333344331    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeCC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  131 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                       .+.+|+||-..   .....++.+++.|+++ |.+++-..
T Consensus       261 -~gg~D~vid~~---g~~~~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          261 -DGGVDYSFECI---GNVSVMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             -TSCBSEEEECS---CCHHHHHHHHHTBCTTTCEEEECSC
T ss_pred             -CCCCCEEEECC---CCHHHHHHHHHHhhccCCEEEEEcc
Confidence             24899887543   2345678889999996 99987544

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.67  E-value=0.0025  Score=49.43  Aligned_cols=100  Identities=14%  Similarity=0.110  Sum_probs=63.5

Q ss_pred             HcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           17 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ..++++||-+|  .|.|..+..+++..  +.+|++++.+++..+.+++    .+....+.....+..+.+....    ..
T Consensus       138 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~----~~  207 (327)
T 1qor_A          138 IKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALK----AGAWQVINYREEDLVERLKEIT----GG  207 (327)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHH----HTCSEEEETTTSCHHHHHHHHT----TT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCCccHHHHHHHHh----CC
Confidence            45678999999  45677777777764  5699999999888777765    2322111111122223222221    12


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+|++|-...    ...++.+++.|+++|.++.-.
T Consensus       208 ~~~D~vi~~~g----~~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          208 KKVRVVYDSVG----RDTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             CCEEEEEECSC----GGGHHHHHHTEEEEEEEEECC
T ss_pred             CCceEEEECCc----hHHHHHHHHHhcCCCEEEEEe
Confidence            47998886544    345678889999999988743

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.65  E-value=0.0017  Score=51.04  Aligned_cols=75  Identities=15%  Similarity=0.058  Sum_probs=54.4

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH-HHhhcccCCCcee
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGSFD   98 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~D   98 (187)
                      +.+++|+.||.|..++.+..+--.-..+.++|+++.+++..++|+..      ..++++|+.+... .+.     ...+|
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~------~~~~~~Di~~~~~~~~~-----~~~~D   70 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH------TQLLAKTIEGITLEEFD-----RLSFD   70 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECSCGGGCCHHHHH-----HHCCS
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc------cccccCCHHHccHhHcC-----cCCcC
Confidence            46899999999999999887621013689999999999999988632      3467788876432 221     12699


Q ss_pred             EEEEeCC
Q 029803           99 YAFVDAD  105 (187)
Q Consensus        99 ~i~~d~~  105 (187)
                      +++.+..
T Consensus        71 ~l~~gpP   77 (343)
T 1g55_A           71 MILMSPP   77 (343)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9998753

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.64  E-value=0.026  Score=44.03  Aligned_cols=100  Identities=16%  Similarity=0.115  Sum_probs=65.6

Q ss_pred             HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch-HHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~   93 (187)
                      +. ++++||-+|+|. |..++.+|+..-++.+|++++.+++..+.+++    .+..   .++..+. .+....+.    .
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~----~  235 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----LGAD---YVSEMKDAESLINKLT----D  235 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----HTCS---EEECHHHHHHHHHHHH----T
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----hCCC---EEeccccchHHHHHhh----c
Confidence            45 789999999863 67788888875114689999999988887765    2432   1222111 22333332    1


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ...+|+||-...   ....++.+++.|+++|.++.-.
T Consensus       236 g~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          236 GLGASIAIDLVG---TEETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             TCCEEEEEESSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCccEEEECCC---ChHHHHHHHHHhhcCCEEEEeC
Confidence            247998875432   2346788889999999998743

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.60  E-value=0.013  Score=45.59  Aligned_cols=100  Identities=18%  Similarity=0.186  Sum_probs=65.5

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +..++++||-+|+| .|..++.+++..  +.+|++++.+++.++.+++    .+...-+.....+..+.+...      .
T Consensus       161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~d~~~~~~~~~~~~~------~  228 (339)
T 1rjw_A          161 GAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEK------V  228 (339)
T ss_dssp             TCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHH------H
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH----CCCCEEecCCCccHHHHHHHH------h
Confidence            45677899999985 577888888875  5699999999988877653    343211111112222333322      1


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +.+|+||-...   ....++.+++.|+++|.++.-.
T Consensus       229 ~~~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g  261 (339)
T 1rjw_A          229 GGVHAAVVTAV---SKPAFQSAYNSIRRGGACVLVG  261 (339)
T ss_dssp             SSEEEEEESSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCEEEECCC---CHHHHHHHHHHhhcCCEEEEec
Confidence            47998876432   2356788889999999998743

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.49  E-value=0.017  Score=45.16  Aligned_cols=93  Identities=16%  Similarity=0.198  Sum_probs=64.8

Q ss_pred             HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +..++++||-+|+|. |..++.+|+..  +.+|++++.+++..+.+++    .|..  . ++ .+..    .+      .
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~--~-v~-~~~~----~~------~  232 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAM--GAEVSVFARNEHKKQDALS----MGVK--H-FY-TDPK----QC------K  232 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSSTTHHHHHH----TTCS--E-EE-SSGG----GC------C
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHh----cCCC--e-ec-CCHH----HH------h
Confidence            456788999999874 78888888876  5699999999998887764    3532  2 22 3321    11      2


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..+|+||-.....   ..++.+++.|+++|.++.-..
T Consensus       233 ~~~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          233 EELDFIISTIPTH---YDLKDYLKLLTYNGDLALVGL  266 (348)
T ss_dssp             SCEEEEEECCCSC---CCHHHHHTTEEEEEEEEECCC
T ss_pred             cCCCEEEECCCcH---HHHHHHHHHHhcCCEEEEECC
Confidence            3799887543332   246678899999999998543

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=96.48  E-value=0.011  Score=46.96  Aligned_cols=103  Identities=12%  Similarity=0.111  Sum_probs=64.7

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc---hHHHHHHHhhccc
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLLKYSE   92 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~~   92 (187)
                      ..++++||-+|+| .|..++.+|+... ..+|++++.+++..+.+++    .+..   .++..+   ..+....+... .
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~~~~----lGa~---~vi~~~~~~~~~~~~~v~~~-~  263 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEE----IGAD---LTLNRRETSVEERRKAIMDI-T  263 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHH----TTCS---EEEETTTSCHHHHHHHHHHH-T
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcC-CceEEEEcCCHHHHHHHHH----cCCc---EEEeccccCcchHHHHHHHH-h
Confidence            4567899999965 4677888888753 2599999999988777663    3432   223322   22222222111 1


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ....+|+||-....   ...++.+++.|+++|.++.-..
T Consensus       264 ~g~g~Dvvid~~g~---~~~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          264 HGRGADFILEATGD---SRALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             TTSCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCCcEEEECCCC---HHHHHHHHHHHhcCCEEEEEec
Confidence            12379988754322   2356778899999999987543

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.46  E-value=0.0059  Score=47.94  Aligned_cols=101  Identities=16%  Similarity=0.132  Sum_probs=65.9

Q ss_pred             HHcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      +..++++||-+|  .|.|..++.+++..  +.+|++++.+++.++.+++.    +...-+.....+..+.+....     
T Consensus       164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~l----Ga~~~~~~~~~~~~~~~~~~~-----  232 (353)
T 4dup_A          164 GLTEGESVLIHGGTSGIGTTAIQLARAF--GAEVYATAGSTGKCEACERL----GAKRGINYRSEDFAAVIKAET-----  232 (353)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHH-----
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHhc----CCCEEEeCCchHHHHHHHHHh-----
Confidence            345778999995  45678888888875  57999999999888877652    432111111223333333331     


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ...+|++|-....    ..++.+++.|+++|.++.-..
T Consensus       233 ~~g~Dvvid~~g~----~~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          233 GQGVDIILDMIGA----AYFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             SSCEEEEEESCCG----GGHHHHHHTEEEEEEEEECCC
T ss_pred             CCCceEEEECCCH----HHHHHHHHHhccCCEEEEEEe
Confidence            3679988765433    256778899999999987543

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=96.46  E-value=0.0037  Score=48.88  Aligned_cols=100  Identities=12%  Similarity=0.144  Sum_probs=65.1

Q ss_pred             HcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           17 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ..++++||-+|+  |.|..++.+++..  +.+|++++.+++.++.+++    .+...-+.....+..+.+....    ..
T Consensus       164 ~~~g~~vlV~Gasg~iG~~~~~~a~~~--G~~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~----~~  233 (343)
T 2eih_A          164 VRPGDDVLVMAAGSGVSVAAIQIAKLF--GARVIATAGSEDKLRRAKA----LGADETVNYTHPDWPKEVRRLT----GG  233 (343)
T ss_dssp             CCTTCEEEECSTTSTTHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCSEEEETTSTTHHHHHHHHT----TT
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHh----CC
Confidence            456789999997  6788888888875  5699999999888877764    2432111111112223333321    12


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+|++|-... .   ..++.+++.|+++|.++.-.
T Consensus       234 ~~~d~vi~~~g-~---~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          234 KGADKVVDHTG-A---LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             TCEEEEEESSC-S---SSHHHHHHHEEEEEEEEESS
T ss_pred             CCceEEEECCC-H---HHHHHHHHhhccCCEEEEEe
Confidence            47998886554 2   24677789999999988743

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.44  E-value=0.01  Score=47.15  Aligned_cols=103  Identities=11%  Similarity=0.011  Sum_probs=66.2

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH-HHhhcccCCCceeE
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGSFDY   99 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~D~   99 (187)
                      .+++|+.||.|..++.+..+-  -..+.++|+++.+.+..+.|+.      ...++++|+.+... .+.........+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~------~~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFP------RSLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCT------TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CeEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCC------CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence            579999999999999888762  2356799999999888888752      35677888765322 11100001368999


Q ss_pred             EEEeCCCccc-----------H-HH---HHHHHhccCCCeEEEEeCCC
Q 029803          100 AFVDADKDNY-----------C-NY---HERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus       100 i~~d~~~~~~-----------~-~~---~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |+.+...+.+           . ..   +-.+.+.++| -+++++|+-
T Consensus        75 i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P-~~~v~ENV~  121 (376)
T 3g7u_A           75 IIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQP-LFFLAENVP  121 (376)
T ss_dssp             EEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCC-SEEEEEECT
T ss_pred             EEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCC-CEEEEecch
Confidence            9987542211           1 11   2234466788 466676654

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=96.43  E-value=0.0063  Score=48.02  Aligned_cols=97  Identities=16%  Similarity=0.084  Sum_probs=63.9

Q ss_pred             CCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           19 NAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        19 ~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ++++||-+|  .+.|..++.+|+.+. +.+|++++.+++..+.+++    .|... +--...+..+.+..+     ..+.
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~-g~~Vi~~~~~~~~~~~~~~----lGad~-vi~~~~~~~~~v~~~-----~~~g  239 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRT-DLTVIATASRPETQEWVKS----LGAHH-VIDHSKPLAAEVAAL-----GLGA  239 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHC-CSEEEEECSSHHHHHHHHH----TTCSE-EECTTSCHHHHHHTT-----CSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHHHH----cCCCE-EEeCCCCHHHHHHHh-----cCCC
Confidence            567899998  346888888988644 6799999999888777754    35321 111112222333322     2458


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|+||-..   .....++.+++.|+++|.++.-
T Consensus       240 ~Dvvid~~---g~~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          240 PAFVFSTT---HTDKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEEECS---CHHHHHHHHHHHSCTTCEEEEC
T ss_pred             ceEEEECC---CchhhHHHHHHHhcCCCEEEEE
Confidence            99877532   2335678889999999999874

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.40  E-value=0.012  Score=46.08  Aligned_cols=99  Identities=13%  Similarity=0.088  Sum_probs=63.7

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           19 NAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ++++||-+|+| .|..++.+|+..  +. +|++++.+++..+.+++.    +...-+.....+..+.+..+.    ....
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~~----Ga~~~~~~~~~~~~~~v~~~~----~g~g  236 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKAS--GAYPVIVSEPSDFRRELAKKV----GADYVINPFEEDVVKEVMDIT----DGNG  236 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHHH----TCSEEECTTTSCHHHHHHHHT----TTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh----CCCEEECCCCcCHHHHHHHHc----CCCC
Confidence            67899999985 367778888875  45 899999998887777642    432111111123333333321    1247


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|+||-...   ....++.+++.|+++|.++.-.
T Consensus       237 ~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          237 VDVFLEFSG---APKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             EEEEEECSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCEEEECCC---CHHHHHHHHHHHhcCCEEEEEc
Confidence            998875432   2456788889999999988743

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=96.39  E-value=0.014  Score=45.64  Aligned_cols=104  Identities=19%  Similarity=0.145  Sum_probs=65.5

Q ss_pred             HHHcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           15 LRLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .+..++++||-+|+|  .|..+..+++... +.+|+++|.+++..+.+++.    +....+.....+..+.+..+.    
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~-Ga~Vi~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~----  236 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKRA----GADYVINASMQDPLAEIRRIT----  236 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT----
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHHHh----CCCEEecCCCccHHHHHHHHh----
Confidence            345577899999987  5667777777652 46899999999888777542    322111111112222233331    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+.+|++|-...   ....++.+++.|+++|.++.-.
T Consensus       237 ~~~~~d~vi~~~g---~~~~~~~~~~~l~~~G~iv~~g  271 (347)
T 1jvb_A          237 ESKGVDAVIDLNN---SEKTLSVYPKALAKQGKYVMVG  271 (347)
T ss_dssp             TTSCEEEEEESCC---CHHHHTTGGGGEEEEEEEEECC
T ss_pred             cCCCceEEEECCC---CHHHHHHHHHHHhcCCEEEEEC
Confidence            1147998886543   2346778889999999998743

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.38  E-value=0.02  Score=43.72  Aligned_cols=92  Identities=17%  Similarity=0.169  Sum_probs=64.1

Q ss_pred             HcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch-HHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~   93 (187)
                      ..++++||-+|+  |.|..++.+++..  +.+|++++.+++..+.+++    .+..   .++..+. .+....+      
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~---~~~~~~~~~~~~~~~------  187 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAE---EAATYAEVPERAKAW------  187 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCS---EEEEGGGHHHHHHHT------
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHh----cCCC---EEEECCcchhHHHHh------
Confidence            557789999997  5677888888875  5699999999988877754    3432   2232222 2333332      


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       ..+|++|- ...    ..++.+++.|+++|.++.-
T Consensus       188 -~~~d~vid-~g~----~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          188 -GGLDLVLE-VRG----KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             -TSEEEEEE-CSC----TTHHHHHTTEEEEEEEEEC
T ss_pred             -cCceEEEE-CCH----HHHHHHHHhhccCCEEEEE
Confidence             57998887 543    3567888999999998874

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.37  E-value=0.0058  Score=47.69  Aligned_cols=100  Identities=12%  Similarity=0.114  Sum_probs=65.1

Q ss_pred             HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhccc
Q 029803           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSE   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~   92 (187)
                      +..++++||-+|+  |.|..++.+++..  +.+|++++.+++.++.+++.   .+....+.... .+..+.+....    
T Consensus       152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~--G~~V~~~~~~~~~~~~~~~~---~g~~~~~d~~~~~~~~~~~~~~~----  222 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAVGQLVGQLAKMM--GCYVVGSAGSKEKVDLLKTK---FGFDDAFNYKEESDLTAALKRCF----  222 (345)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT---SCCSEEEETTSCSCSHHHHHHHC----
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHH---cCCceEEecCCHHHHHHHHHHHh----
Confidence            3457789999996  5777888888765  56999999998877766532   34321111111 13333343331    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       ...+|++|-....    ..++.+++.|+++|.++.-
T Consensus       223 -~~~~d~vi~~~g~----~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          223 -PNGIDIYFENVGG----KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             -TTCEEEEEESSCH----HHHHHHHTTEEEEEEEEEC
T ss_pred             -CCCCcEEEECCCH----HHHHHHHHHHhcCCEEEEE
Confidence             2579988765422    3678889999999999874

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.33  E-value=0.0049  Score=46.40  Aligned_cols=53  Identities=15%  Similarity=0.199  Sum_probs=39.9

Q ss_pred             cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc-----------------ccHHHHHHHHhccCCCeEEEEe
Q 029803           72 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        72 ~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~-----------------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+++++|+.+.+..+     ..++||+||+|+...                 .....++.+.++|+|+|.+++.
T Consensus         4 ~~~l~~gD~~~~l~~l-----~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~   73 (260)
T 1g60_A            4 INKIHQMNCFDFLDQV-----ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (260)
T ss_dssp             SSSEEECCHHHHHHHS-----CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCeEEechHHHHHHhc-----cccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence            3568999999988775     246899999997421                 1234567778999999998875

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=96.28  E-value=0.0082  Score=47.11  Aligned_cols=101  Identities=16%  Similarity=0.131  Sum_probs=63.6

Q ss_pred             HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      +..++++||-.|+  |.|..++.+++..  +.+|++++.+++..+.+++    .+....+.....+..+.+....    .
T Consensus       167 ~~~~g~~vlV~GasggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~----~ga~~~~d~~~~~~~~~~~~~~----~  236 (351)
T 1yb5_A          167 CVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYV----G  236 (351)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHH----C
T ss_pred             CCCCcCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCChhHHHHHHH----cCCCEEEeCCCchHHHHHHHHc----C
Confidence            3456789999996  5677778888765  5799999999887775543    3432111111122222222221    1


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ...+|++|-....    ..++.+++.|+++|.++.-.
T Consensus       237 ~~~~D~vi~~~G~----~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          237 EKGIDIIIEMLAN----VNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             TTCEEEEEESCHH----HHHHHHHHHEEEEEEEEECC
T ss_pred             CCCcEEEEECCCh----HHHHHHHHhccCCCEEEEEe
Confidence            2479988764321    35677889999999998743

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.19  E-value=0.0072  Score=47.02  Aligned_cols=54  Identities=19%  Similarity=0.238  Sum_probs=41.1

Q ss_pred             CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc-----------------ccHHHHHHHHhccCCCeEEEEe
Q 029803           71 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD-----------------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        71 ~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~-----------------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...+++++|+.+.++.+     ..++||+|++|+...                 .....++++.++|+|||.+++.
T Consensus        13 ~~~~ii~gD~~~~l~~l-----~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~   83 (323)
T 1boo_A           13 SNGSMYIGDSLELLESF-----PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   83 (323)
T ss_dssp             SSEEEEESCHHHHGGGS-----CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEeCcHHHHHhhC-----CCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence            45889999998876654     257899999996421                 1345677888999999998874

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.16  E-value=0.0071  Score=47.06  Aligned_cols=58  Identities=9%  Similarity=0.036  Sum_probs=46.4

Q ss_pred             HHHHHHHH--HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC
Q 029803            9 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV   69 (187)
Q Consensus         9 ~ll~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~   69 (187)
                      +++..++.  ..++..|||-.||+|.++......   +.+.+++|+++...+.+++++...+.
T Consensus       240 ~l~~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~  299 (323)
T 1boo_A          240 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDNNI  299 (323)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCSCS
T ss_pred             HHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhccc
Confidence            45555555  346789999999999998877664   57999999999999999999876554

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=96.15  E-value=0.021  Score=44.74  Aligned_cols=101  Identities=13%  Similarity=0.128  Sum_probs=63.8

Q ss_pred             HHcCC--CEEEEEcc--cccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029803           16 RLVNA--KKTIEIGV--FTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY   90 (187)
Q Consensus        16 ~~~~~--~~vLeiG~--g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   90 (187)
                      +..++  ++||-.|+  |.|..++.+++..  +. +|++++.+++..+.+++.   .+....+.....+..+.+....  
T Consensus       155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~--Ga~~Vi~~~~~~~~~~~~~~~---~g~~~~~d~~~~~~~~~~~~~~--  227 (357)
T 2zb4_A          155 HITAGSNKTMVVSGAAGACGSVAGQIGHFL--GCSRVVGICGTHEKCILLTSE---LGFDAAINYKKDNVAEQLRESC--  227 (357)
T ss_dssp             CCCTTSCCEEEESSTTBHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHHT---SCCSEEEETTTSCHHHHHHHHC--
T ss_pred             CCCCCCccEEEEECCCcHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHH---cCCceEEecCchHHHHHHHHhc--
Confidence            35567  89999996  5667777777764  56 999999988776666542   3432111111122223333321  


Q ss_pred             ccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           91 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                         .+.+|++|-...    ...++.+++.|+++|.++.-.
T Consensus       228 ---~~~~d~vi~~~G----~~~~~~~~~~l~~~G~iv~~G  260 (357)
T 2zb4_A          228 ---PAGVDVYFDNVG----GNISDTVISQMNENSHIILCG  260 (357)
T ss_dssp             ---TTCEEEEEESCC----HHHHHHHHHTEEEEEEEEECC
T ss_pred             ---CCCCCEEEECCC----HHHHHHHHHHhccCcEEEEEC
Confidence               237998886543    256788899999999998743

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.15  E-value=0.011  Score=46.05  Aligned_cols=54  Identities=15%  Similarity=0.214  Sum_probs=40.6

Q ss_pred             CcEEEE-EcchHHHHHHHhhcccCCCceeEEEEeCCCc----------cc----HHHHHHHHhccCCCeEEEEe
Q 029803           71 HKINFI-ESEALSVLDQLLKYSENEGSFDYAFVDADKD----------NY----CNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        71 ~~~~~~-~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~----------~~----~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...+++ ++|+.+.+..+     ..+++|+||+|+...          .+    ...+.++.++|+|+|.+++.
T Consensus        37 ~~~~l~i~gD~l~~L~~l-----~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~  105 (319)
T 1eg2_A           37 TTRHVYDVCDCLDTLAKL-----PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF  105 (319)
T ss_dssp             CEEEEEEECCHHHHHHTS-----CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccceEEECCcHHHHHHhC-----ccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            346788 99999988765     246899999997432          12    34567778999999999884

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=96.13  E-value=0.037  Score=43.40  Aligned_cols=99  Identities=7%  Similarity=0.051  Sum_probs=63.4

Q ss_pred             HHHcCC------CEEEEEccc-ccHHH-HHHH-hhCCCCCE-EEEEeCCcc---hHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803           15 LRLVNA------KKTIEIGVF-TGYSL-LLTA-LTIPEDGQ-ITAIDVNRE---TYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus        15 ~~~~~~------~~vLeiG~g-~G~~~-~~la-~~~~~~~~-v~~iD~~~~---~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      .+..++      ++||-+|+| .|..+ +.+| +..  +.+ |++++.+++   ..+.+++    .|.. .+.....+..
T Consensus       162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~--Ga~~Vi~~~~~~~~~~~~~~~~~----lGa~-~v~~~~~~~~  234 (357)
T 2b5w_A          162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDK--GYENLYCLGRRDRPDPTIDIIEE----LDAT-YVDSRQTPVE  234 (357)
T ss_dssp             HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTT--CCCEEEEEECCCSSCHHHHHHHH----TTCE-EEETTTSCGG
T ss_pred             cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHc--CCcEEEEEeCCcccHHHHHHHHH----cCCc-ccCCCccCHH
Confidence            456677      899999974 36677 7777 765  455 999999888   7777653    3432 1211111222


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      + +..+      .+.+|+||-...   ....++.+++.|+++|.++.-.
T Consensus       235 ~-i~~~------~gg~Dvvid~~g---~~~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          235 D-VPDV------YEQMDFIYEATG---FPKHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             G-HHHH------SCCEEEEEECSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             H-HHHh------CCCCCEEEECCC---ChHHHHHHHHHHhcCCEEEEEe
Confidence            3 3332      137998875332   2346788899999999998743

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=96.08  E-value=0.023  Score=44.58  Aligned_cols=100  Identities=8%  Similarity=0.054  Sum_probs=63.1

Q ss_pred             HcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           17 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ..++++||-+|  .|.|..++.+++..  +.+|++++.+++.++.+++.    +....+.....+..+.+....    ..
T Consensus       160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~--Ga~Vi~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~----~~  229 (354)
T 2j8z_A          160 VQAGDYVLIHAGLSGVGTAAIQLTRMA--GAIPLVTAGSQKKLQMAEKL----GAAAGFNYKKEDFSEATLKFT----KG  229 (354)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT----TT
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHc----CCcEEEecCChHHHHHHHHHh----cC
Confidence            45678999998  45677777787764  57999999998887777432    322111111122223333221    12


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..+|++|-.....    .++.+++.|+++|.++.-.
T Consensus       230 ~~~d~vi~~~G~~----~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          230 AGVNLILDCIGGS----YWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             SCEEEEEESSCGG----GHHHHHHHEEEEEEEEECC
T ss_pred             CCceEEEECCCch----HHHHHHHhccCCCEEEEEe
Confidence            4799888654332    4667789999999998754

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=96.07  E-value=0.037  Score=43.18  Aligned_cols=97  Identities=14%  Similarity=0.090  Sum_probs=63.9

Q ss_pred             HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      +..++++||-+|+  +.|..++.+++..  +.+|+++ .+++.++.+++    .+... +. ...+..+.+....    .
T Consensus       147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~--Ga~Vi~~-~~~~~~~~~~~----lGa~~-i~-~~~~~~~~~~~~~----~  213 (343)
T 3gaz_A          147 QVQDGQTVLIQGGGGGVGHVAIQIALAR--GARVFAT-ARGSDLEYVRD----LGATP-ID-ASREPEDYAAEHT----A  213 (343)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEE-ECHHHHHHHHH----HTSEE-EE-TTSCHHHHHHHHH----T
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHC--CCEEEEE-eCHHHHHHHHH----cCCCE-ec-cCCCHHHHHHHHh----c
Confidence            3457789999993  5688888888875  5699999 78877766654    34332 22 2223333333332    2


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...+|+||-....    ..++.+++.|+++|.++.-
T Consensus       214 ~~g~D~vid~~g~----~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          214 GQGFDLVYDTLGG----PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             TSCEEEEEESSCT----HHHHHHHHHEEEEEEEEES
T ss_pred             CCCceEEEECCCc----HHHHHHHHHHhcCCeEEEE
Confidence            3579988754332    4678888999999999874

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.06  E-value=0.012  Score=45.94  Aligned_cols=97  Identities=10%  Similarity=-0.043  Sum_probs=64.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      +..+++|+.||+|..++.+..+-  -..+.++|+++.+.+..+.|+....        ++|+.+.....      -..+|
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG--~~~v~~~e~d~~a~~t~~~N~~~~~--------~~Di~~~~~~~------~~~~D   73 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCG--AECVYSNEWDKYAQEVYEMNFGEKP--------EGDITQVNEKT------IPDHD   73 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTT--CEEEEEECCCHHHHHHHHHHHSCCC--------BSCGGGSCGGG------SCCCS
T ss_pred             CCCcEEEECCCcCHHHHHHHHCC--CeEEEEEeCCHHHHHHHHHHcCCCC--------cCCHHHcCHhh------CCCCC
Confidence            35689999999999999887752  2457889999999999999874311        57776643221      24699


Q ss_pred             EEEEeCCC---------------cc-cHHHHHHHHhccCCCeEEEEeCCC
Q 029803           99 YAFVDADK---------------DN-YCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        99 ~i~~d~~~---------------~~-~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +++.+...               .. .-..+-.+.+.++|. +++++|+-
T Consensus        74 ~l~~gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i~~~~P~-~~~~ENV~  122 (327)
T 2c7p_A           74 ILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPK-VVFMENVK  122 (327)
T ss_dssp             EEEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCCS-EEEEEEEG
T ss_pred             EEEECCCCCCcchhcccCCCcchhhHHHHHHHHHHHhccCc-EEEEeCcH
Confidence            99987321               11 111223344667885 67777664

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.05  E-value=0.012  Score=45.68  Aligned_cols=57  Identities=14%  Similarity=0.207  Sum_probs=43.8

Q ss_pred             HHHHHHHH--HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCc---chHHHHHHHHHhcC
Q 029803            9 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNR---ETYEIGLPIIKKAG   68 (187)
Q Consensus         9 ~ll~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~---~~~~~a~~~~~~~~   68 (187)
                      +++..++.  ..++..|||-.||+|.++......   +.+.+++|+++   +.++.+++++...+
T Consensus       230 ~l~~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~---~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          230 AVIERLVRALSHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHhCCCCCEEEecCCCCCHHHHHHHHc---CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            45555554  346789999999999998887765   57999999999   99999999987654

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.00  E-value=0.022  Score=44.72  Aligned_cols=99  Identities=20%  Similarity=0.126  Sum_probs=64.2

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH-HHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL-SVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~   93 (187)
                      +..++++||-+|+| .|..++.+|+..  +.+|++++.+++.++.+++    .+..   .++..... +....+      
T Consensus       176 ~~~~g~~VlV~GaG~vG~~~~qlak~~--Ga~Vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~------  240 (360)
T 1piw_A          176 GCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK----MGAD---HYIATLEEGDWGEKY------  240 (360)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH----HTCS---EEEEGGGTSCHHHHS------
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH----cCCC---EEEcCcCchHHHHHh------
Confidence            45678899999975 477788888875  4689999999998888765    2432   22222211 223332      


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .+.+|+||-..... ....++.+++.|+++|.++.-.
T Consensus       241 ~~~~D~vid~~g~~-~~~~~~~~~~~l~~~G~iv~~g  276 (360)
T 1piw_A          241 FDTFDLIVVCASSL-TDIDFNIMPKAMKVGGRIVSIS  276 (360)
T ss_dssp             CSCEEEEEECCSCS-TTCCTTTGGGGEEEEEEEEECC
T ss_pred             hcCCCEEEECCCCC-cHHHHHHHHHHhcCCCEEEEec
Confidence            25799887643320 0123556778999999998743

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.98  E-value=0.034  Score=43.38  Aligned_cols=96  Identities=19%  Similarity=0.127  Sum_probs=63.6

Q ss_pred             CCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           19 NAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        19 ~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ++++||-+|  .+.|..++.+++..  +.+|++++.+++.++.+++    .+... +--...+..+.+...     ....
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~-vi~~~~~~~~~~~~~-----~~~g  217 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAY--GLRVITTASRNETIEWTKK----MGADI-VLNHKESLLNQFKTQ-----GIEL  217 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHT--TCEEEEECCSHHHHHHHHH----HTCSE-EECTTSCHHHHHHHH-----TCCC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCcE-EEECCccHHHHHHHh-----CCCC
Confidence            678999994  34677888888875  5699999999988887775    24321 111112333333333     2457


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|+||-..   .....++.+++.|+++|.++.-
T Consensus       218 ~Dvv~d~~---g~~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          218 VDYVFCTF---NTDMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEEEEESS---CHHHHHHHHHHHEEEEEEEEES
T ss_pred             ccEEEECC---CchHHHHHHHHHhccCCEEEEE
Confidence            99887532   2345678889999999999763

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.95  E-value=0.011  Score=45.31  Aligned_cols=54  Identities=19%  Similarity=0.131  Sum_probs=39.0

Q ss_pred             CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc---c--------------------cHHHHHHHHhccCCCeEEE
Q 029803           71 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD---N--------------------YCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        71 ~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~---~--------------------~~~~~~~~~~~L~~gG~lv  127 (187)
                      .+++++++|+.+.++.+     ..++||+|++|...-   .                    +...++++.++|+|||.++
T Consensus        20 ~~~~i~~gD~~~~l~~l-----~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~   94 (297)
T 2zig_A           20 GVHRLHVGDAREVLASF-----PEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLV   94 (297)
T ss_dssp             -CEEEEESCHHHHHTTS-----CTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             cCCEEEECcHHHHHhhC-----CCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence            35789999999876654     247999999996321   1                    1234567789999999987


Q ss_pred             Ee
Q 029803          128 YD  129 (187)
Q Consensus       128 ~~  129 (187)
                      +.
T Consensus        95 i~   96 (297)
T 2zig_A           95 IV   96 (297)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=95.68  E-value=0.15  Score=40.13  Aligned_cols=98  Identities=10%  Similarity=0.078  Sum_probs=62.8

Q ss_pred             cCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           18 VNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        18 ~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      .++++||-+|+  +.|..++.+|+..  +.+|+++. +++..+.+++    .|...-+.....+..+.+..+.     .+
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~--Ga~Vi~~~-~~~~~~~~~~----lGa~~vi~~~~~~~~~~v~~~t-----~g  230 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLS--GYIPIATC-SPHNFDLAKS----RGAEEVFDYRAPNLAQTIRTYT-----KN  230 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHHH----TTCSEEEETTSTTHHHHHHHHT-----TT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe-CHHHHHHHHH----cCCcEEEECCCchHHHHHHHHc-----cC
Confidence            56789999998  3788999999876  56888874 7777766553    4533212222233333333331     24


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhcc-CCCeEEEEeC
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLL-KVGGIAVYDN  130 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L-~~gG~lv~~~  130 (187)
                      .+|++|-..   .....++.+++.| +++|.++.-.
T Consensus       231 ~~d~v~d~~---g~~~~~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          231 NLRYALDCI---TNVESTTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCCEEEESS---CSHHHHHHHHHHSCTTCEEEEESS
T ss_pred             CccEEEECC---CchHHHHHHHHHhhcCCCEEEEEe
Confidence            599887533   2335677788888 6999998754

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.57  E-value=0.056  Score=36.35  Aligned_cols=93  Identities=8%  Similarity=0.009  Sum_probs=57.7

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029803           21 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   97 (187)
                      .+|+-+|+  |..+..+++.+. .+.+|+.+|.+++.++.+++    .    .+.++.+|+.+  .+...     .-..+
T Consensus         8 ~~viIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~----g~~~i~gd~~~~~~l~~a-----~i~~a   72 (140)
T 3fwz_A            8 NHALLVGY--GRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R----GVRAVLGNAANEEIMQLA-----HLECA   72 (140)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T----TCEEEESCTTSHHHHHHT-----TGGGC
T ss_pred             CCEEEECc--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c----CCCEEECCCCCHHHHHhc-----CcccC
Confidence            47888887  555555555442 25789999999988776653    2    25678888754  33332     12578


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |++++..........+-...+.+.|+..++.
T Consensus        73 d~vi~~~~~~~~n~~~~~~a~~~~~~~~iia  103 (140)
T 3fwz_A           73 KWLILTIPNGYEAGEIVASARAKNPDIEIIA  103 (140)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             CEEEEECCChHHHHHHHHHHHHHCCCCeEEE
Confidence            9988764433222223334566777777765

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.53  E-value=0.1  Score=41.08  Aligned_cols=95  Identities=20%  Similarity=0.175  Sum_probs=60.4

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      ++++||-+|+| .|..++.+|+..  +.+|++++.+++..+.+++.   .+..   .++..+..+.+...      .+.+
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~---lGa~---~v~~~~~~~~~~~~------~~~~  252 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAF--GSKVTVISTSPSKKEEALKN---FGAD---SFLVSRDQEQMQAA------AGTL  252 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHHT---SCCS---EEEETTCHHHHHHT------TTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHh---cCCc---eEEeccCHHHHHHh------hCCC
Confidence            67899999975 366777777765  56999999998877766533   3432   22222222333332      2479


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      |+||-......   .++.+++.|+++|.++.-.
T Consensus       253 D~vid~~g~~~---~~~~~~~~l~~~G~iv~~g  282 (366)
T 1yqd_A          253 DGIIDTVSAVH---PLLPLFGLLKSHGKLILVG  282 (366)
T ss_dssp             EEEEECCSSCC---CSHHHHHHEEEEEEEEECC
T ss_pred             CEEEECCCcHH---HHHHHHHHHhcCCEEEEEc
Confidence            98886543221   2355678899999988743

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.41  E-value=0.025  Score=44.03  Aligned_cols=94  Identities=14%  Similarity=0.107  Sum_probs=62.3

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHHhhcccC
Q 029803           19 NAKKTIEIGVF-TGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKYSEN   93 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~~~   93 (187)
                      ++++||-+|+| .|..++.+|+..  +. +|++++.+++.++.+++. .     .  .++.   .+..+.+..+.     
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~--Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v~~~~~~~~~~~~~~~~-----  228 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRAS--GAGPILVSDPNPYRLAFARPY-A-----D--RLVNPLEEDLLEVVRRVT-----  228 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHT--TCCSEEEECSCHHHHGGGTTT-C-----S--EEECTTTSCHHHHHHHHH-----
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHh-H-----H--hccCcCccCHHHHHHHhc-----
Confidence            77899999975 367778888875  45 899999998877766542 1     1  1121   23333333321     


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ...+|+||-...   ....++.+++.|+++|.++.-.
T Consensus       229 ~~g~D~vid~~g---~~~~~~~~~~~l~~~G~iv~~g  262 (343)
T 2dq4_A          229 GSGVEVLLEFSG---NEAAIHQGLMALIPGGEARILG  262 (343)
T ss_dssp             SSCEEEEEECSC---CHHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCEEEECCC---CHHHHHHHHHHHhcCCEEEEEe
Confidence            257998875432   2356788889999999988743

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.32  E-value=0.051  Score=41.73  Aligned_cols=75  Identities=13%  Similarity=0.070  Sum_probs=52.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH-HhhcccCCC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ-LLKYSENEG   95 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~   95 (187)
                      .++.+++|+.||.|..++.+..+-- ... +.++|+++.+.+..+.|+.      ...++.+|+.++... +..    .+
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~-~~~~v~a~E~d~~a~~ty~~N~~------~~~~~~~DI~~i~~~~i~~----~~   82 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGI-QVDRYIASEVCEDSITVGMVRHQ------GKIMYVGDVRSVTQKHIQE----WG   82 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTB-CEEEEEEECCCHHHHHHHHHHTT------TCEEEECCGGGCCHHHHHH----TC
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCC-ccceEEEEECCHHHHHHHHHhCC------CCceeCCChHHccHHHhcc----cC
Confidence            3456899999999999988876521 122 6899999998887777752      245778888764322 211    25


Q ss_pred             ceeEEEEe
Q 029803           96 SFDYAFVD  103 (187)
Q Consensus        96 ~~D~i~~d  103 (187)
                      .+|+++..
T Consensus        83 ~~Dll~gg   90 (295)
T 2qrv_A           83 PFDLVIGG   90 (295)
T ss_dssp             CCSEEEEC
T ss_pred             CcCEEEec
Confidence            79999876

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.13  E-value=0.076  Score=41.59  Aligned_cols=97  Identities=20%  Similarity=0.252  Sum_probs=61.3

Q ss_pred             Hc-CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           17 LV-NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        17 ~~-~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      .. ++++||-+|+| .|..++.+|+..  +.+|++++.+++..+.+++   ..+...   ++..+-.+.+...      .
T Consensus       177 ~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~~~~~~~~~~~~---~lGa~~---vi~~~~~~~~~~~------~  242 (357)
T 2cf5_A          177 LKQPGLRGGILGLGGVGHMGVKIAKAM--GHHVTVISSSNKKREEALQ---DLGADD---YVIGSDQAKMSEL------A  242 (357)
T ss_dssp             TTSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSTTHHHHHHT---TSCCSC---EEETTCHHHHHHS------T
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHH---HcCCce---eeccccHHHHHHh------c
Confidence            44 77899999975 466777787765  4699999999887766552   234332   2222212333332      2


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +.+|+||-......   .++.+++.|+++|.++.-.
T Consensus       243 ~g~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          243 DSLDYVIDTVPVHH---ALEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             TTEEEEEECCCSCC---CSHHHHTTEEEEEEEEECS
T ss_pred             CCCCEEEECCCChH---HHHHHHHHhccCCEEEEeC
Confidence            47998875433221   2456678999999998743

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.12  E-value=0.089  Score=41.73  Aligned_cols=99  Identities=18%  Similarity=0.115  Sum_probs=57.8

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++++|+-+|+| .|......+..+  +.+|+++|.+++.++.+++.+   +..  +.....+..+ +....      ..
T Consensus       166 l~g~~V~ViG~G~iG~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~---g~~--~~~~~~~~~~-l~~~l------~~  231 (377)
T 2vhw_A          166 VEPADVVVIGAGTAGYNAARIANGM--GATVTVLDINIDKLRQLDAEF---CGR--IHTRYSSAYE-LEGAV------KR  231 (377)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TTS--SEEEECCHHH-HHHHH------HH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhc---CCe--eEeccCCHHH-HHHHH------cC
Confidence            467899999985 344445555554  469999999988777665433   321  2222222222 22221      35


Q ss_pred             eeEEEEeCCCcc--c-HHHHHHHHhccCCCeEEEEeC
Q 029803           97 FDYAFVDADKDN--Y-CNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        97 ~D~i~~d~~~~~--~-~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .|+|+.....+.  . .-+.+...+.|++||+++--.
T Consensus       232 aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          232 ADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred             CCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence            899987432111  1 112456678999999887643

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=95.10  E-value=0.043  Score=42.40  Aligned_cols=91  Identities=9%  Similarity=0.065  Sum_probs=58.2

Q ss_pred             EEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc-ch-HHHHHHHhhcccCCCce
Q 029803           22 KTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES-EA-LSVLDQLLKYSENEGSF   97 (187)
Q Consensus        22 ~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~-d~-~~~~~~~~~~~~~~~~~   97 (187)
                      +||-+|+  |.|..++.+++..  +.+|++++.+++..+.+++    .+...   ++.. +. .+....+     ....+
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~---~i~~~~~~~~~~~~~-----~~~~~  217 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRV----LGAKE---VLAREDVMAERIRPL-----DKQRW  217 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHH----TTCSE---EEECC---------C-----CSCCE
T ss_pred             eEEEecCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH----cCCcE---EEecCCcHHHHHHHh-----cCCcc
Confidence            8999996  6778888888876  4689999999888877754    34321   1211 11 1112221     13479


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      |++|-....    ..++.+++.++++|.++.-.
T Consensus       218 d~vid~~g~----~~~~~~~~~l~~~G~~v~~G  246 (328)
T 1xa0_A          218 AAAVDPVGG----RTLATVLSRMRYGGAVAVSG  246 (328)
T ss_dssp             EEEEECSTT----TTHHHHHHTEEEEEEEEECS
T ss_pred             cEEEECCcH----HHHHHHHHhhccCCEEEEEe
Confidence            988754332    24677889999999998743

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=95.07  E-value=0.22  Score=38.74  Aligned_cols=96  Identities=9%  Similarity=-0.035  Sum_probs=58.1

Q ss_pred             CEEEEE-c-ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           21 KKTIEI-G-VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        21 ~~vLei-G-~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ++||-. | .+.|..++.+++..  +.+|++++.+++..+.+++    .+...-+.....+..+.+..+..    ...+|
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~--Ga~Vi~~~~~~~~~~~~~~----~Ga~~~~~~~~~~~~~~v~~~~~----~~g~D  235 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEE--GFRPIVTVRRDEQIALLKD----IGAAHVLNEKAPDFEATLREVMK----AEQPR  235 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHH--TCEEEEEESCGGGHHHHHH----HTCSEEEETTSTTHHHHHHHHHH----HHCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCCEEEECCcHHHHHHHHHHhc----CCCCc
Confidence            566654 3 33566777777765  5699999999998887764    34321111111233333333211    14799


Q ss_pred             EEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           99 YAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        99 ~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ++|-....    ..++.+++.|+++|.++.-.
T Consensus       236 ~vid~~g~----~~~~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          236 IFLDAVTG----PLASAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             EEEESSCH----HHHHHHHHHSCTTCEEEECC
T ss_pred             EEEECCCC----hhHHHHHhhhcCCCEEEEEe
Confidence            88754322    23477889999999998854

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=95.01  E-value=0.068  Score=43.39  Aligned_cols=101  Identities=13%  Similarity=0.059  Sum_probs=64.6

Q ss_pred             HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc-----------h--
Q 029803           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-----------A--   80 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-----------~--   80 (187)
                      +..++++||-+|+  +.|..++.+|+..  +.++++++.+++.++.+++    .|...-+.....|           .  
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~--Ga~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~d~~~~~~~~~~~~~~  298 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAG--GANPICVVSSPQKAEICRA----MGAEAIIDRNAEGYRFWKDENTQDPKE  298 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----HTCCEEEETTTTTCCSEEETTEECHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHh----hCCcEEEecCcCcccccccccccchHH
Confidence            3457789999996  5678888888875  5799999988888777754    3432111111111           0  


Q ss_pred             ----HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           81 ----LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        81 ----~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                          .+.+..+.    ....+|+||-...    ...++.+++.|+++|.++.-.
T Consensus       299 ~~~~~~~i~~~t----~g~g~Dvvid~~G----~~~~~~~~~~l~~~G~iv~~G  344 (456)
T 3krt_A          299 WKRFGKRIRELT----GGEDIDIVFEHPG----RETFGASVFVTRKGGTITTCA  344 (456)
T ss_dssp             HHHHHHHHHHHH----TSCCEEEEEECSC----HHHHHHHHHHEEEEEEEEESC
T ss_pred             HHHHHHHHHHHh----CCCCCcEEEEcCC----chhHHHHHHHhhCCcEEEEEe
Confidence                12222221    2358998775322    156788899999999998743

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=94.99  E-value=0.036  Score=43.22  Aligned_cols=74  Identities=14%  Similarity=-0.058  Sum_probs=51.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEE-EEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH-HHhhcccCCCc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQI-TAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGS   96 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v-~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~   96 (187)
                      ++.+++|+.||.|..+.-+..+--+...+ .++|+++.+.+..+.|+...       ++++|+.+... .+.     ...
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~-------~~~~DI~~~~~~~i~-----~~~   76 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE-------VQVKNLDSISIKQIE-----SLN   76 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC-------CBCCCTTTCCHHHHH-----HTC
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC-------cccCChhhcCHHHhc-----cCC
Confidence            45689999999999998887652101345 69999999999999887421       45667655322 221     136


Q ss_pred             eeEEEEeC
Q 029803           97 FDYAFVDA  104 (187)
Q Consensus        97 ~D~i~~d~  104 (187)
                      +|+++...
T Consensus        77 ~Dil~ggp   84 (327)
T 3qv2_A           77 CNTWFMSP   84 (327)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEecC
Confidence            89998764

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=94.98  E-value=0.056  Score=42.21  Aligned_cols=98  Identities=13%  Similarity=0.095  Sum_probs=57.4

Q ss_pred             HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      +..++++||-+|+  +.|..++.+|+... ..+|++++ +++..+.++     .+...-+. ...+..+.+..+     .
T Consensus       139 ~~~~g~~VlV~Ga~G~vG~~a~qla~~~g-~~~V~~~~-~~~~~~~~~-----~ga~~~~~-~~~~~~~~~~~~-----~  205 (349)
T 4a27_A          139 NLREGMSVLVHSAGGGVGQAVAQLCSTVP-NVTVFGTA-STFKHEAIK-----DSVTHLFD-RNADYVQEVKRI-----S  205 (349)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHTTST-TCEEEEEE-CGGGHHHHG-----GGSSEEEE-TTSCHHHHHHHH-----C
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcC-CcEEEEeC-CHHHHHHHH-----cCCcEEEc-CCccHHHHHHHh-----c
Confidence            3557789999997  45778888887664 56888887 555444433     34332122 222333333333     1


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .+.+|+||-....+    .++.+++.|+++|.++.-.
T Consensus       206 ~~g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~G  238 (349)
T 4a27_A          206 AEGVDIVLDCLCGD----NTGKGLSLLKPLGTYILYG  238 (349)
T ss_dssp             TTCEEEEEEECC-----------CTTEEEEEEEEEEC
T ss_pred             CCCceEEEECCCch----hHHHHHHHhhcCCEEEEEC
Confidence            35899888543222    2367889999999998743

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=94.98  E-value=0.1  Score=40.84  Aligned_cols=106  Identities=13%  Similarity=0.066  Sum_probs=59.1

Q ss_pred             HcCC-CEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE---cchHHHHHHHhhc
Q 029803           17 LVNA-KKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---SEALSVLDQLLKY   90 (187)
Q Consensus        17 ~~~~-~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~~   90 (187)
                      ..++ .+||-+|+  +.|..++.+|+..  +.+++++..+++..+..++.++..|...-+....   .+..+.+..+...
T Consensus       164 ~~~g~~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~  241 (364)
T 1gu7_A          164 LTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQ  241 (364)
T ss_dssp             CCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHH
T ss_pred             cCCCCcEEEECCCCcHHHHHHHHHHHHC--CCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhc
Confidence            4466 89999985  5677888888875  5688887655554222223334445432111110   2222333322100


Q ss_pred             ccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           91 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                        ....+|+||-...   ..... .+++.|+++|.++.-.
T Consensus       242 --~~~g~Dvvid~~G---~~~~~-~~~~~l~~~G~~v~~g  275 (364)
T 1gu7_A          242 --SGGEAKLALNCVG---GKSST-GIARKLNNNGLMLTYG  275 (364)
T ss_dssp             --HTCCEEEEEESSC---HHHHH-HHHHTSCTTCEEEECC
T ss_pred             --cCCCceEEEECCC---chhHH-HHHHHhccCCEEEEec
Confidence              0257998875332   12233 6789999999998744

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.93  E-value=0.13  Score=40.55  Aligned_cols=98  Identities=14%  Similarity=0.148  Sum_probs=58.9

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++++|+-+|+| .|..+..++...  +.+|+.+|.+++.++.+++....     .+.....+..+....+       ..
T Consensus       165 l~~~~VlViGaGgvG~~aa~~a~~~--Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~  230 (361)
T 1pjc_A          165 VKPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAV-------AE  230 (361)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHH-------HT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHH-------cC
Confidence            356899999985 344555566655  45999999999888877665422     2333333332332332       36


Q ss_pred             eeEEEEeCCCcc--cHH-HHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDADKDN--YCN-YHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~~~~--~~~-~~~~~~~~L~~gG~lv~~  129 (187)
                      +|+|+-......  .+. ..+...+.+++||+++--
T Consensus       231 ~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv  266 (361)
T 1pjc_A          231 ADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDV  266 (361)
T ss_dssp             CSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEET
T ss_pred             CCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEE
Confidence            898875432211  011 134567889999987753

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=94.79  E-value=0.043  Score=42.87  Aligned_cols=73  Identities=11%  Similarity=0.052  Sum_probs=50.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH-HHhhcccCCCcee
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD-QLLKYSENEGSFD   98 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~D   98 (187)
                      +.+++|+.||.|..+.-+..+--....+.++|+++.+.+..+.|+..      ..++.+|+.+... .+.     ...+|
T Consensus         3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~------~~~~~~DI~~~~~~~~~-----~~~~D   71 (333)
T 4h0n_A            3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE------TNLLNRNIQQLTPQVIK-----KWNVD   71 (333)
T ss_dssp             CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT------SCEECCCGGGCCHHHHH-----HTTCC
T ss_pred             CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC------CceeccccccCCHHHhc-----cCCCC
Confidence            35799999999999988876521013578999999998888887632      3456778765422 221     13689


Q ss_pred             EEEEe
Q 029803           99 YAFVD  103 (187)
Q Consensus        99 ~i~~d  103 (187)
                      +++..
T Consensus        72 ~l~gg   76 (333)
T 4h0n_A           72 TILMS   76 (333)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            99865

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=94.67  E-value=0.2  Score=39.48  Aligned_cols=99  Identities=16%  Similarity=0.175  Sum_probs=57.0

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++++|+-+|+| .|......+...  +.+|+.+|.+++..+.+++.+   +.  .+.....+..+ +....      ..
T Consensus       164 l~~~~V~ViGaG~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~-l~~~~------~~  229 (369)
T 2eez_A          164 VAPASVVILGGGTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDVF---GG--RVITLTATEAN-IKKSV------QH  229 (369)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHH-HHHHH------HH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHH-HHHHH------hC
Confidence            457899999984 334444444443  569999999988776655432   32  23333333322 22221      46


Q ss_pred             eeEEEEeCCCcc--cHH-HHHHHHhccCCCeEEEEeC
Q 029803           97 FDYAFVDADKDN--YCN-YHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        97 ~D~i~~d~~~~~--~~~-~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|+|+.......  ... ..+.+.+.|++||+++.-.
T Consensus       230 ~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          230 ADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             CSEEEECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             CCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            899876543221  111 2466778999999887543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=94.67  E-value=0.38  Score=31.56  Aligned_cols=94  Identities=14%  Similarity=0.122  Sum_probs=54.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCc
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~   96 (187)
                      .++|+-+|+  |..+..++..+. .+.+|+.+|.+++..+..++.   .+    +.++.+|..+  .+...     ....
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~~----~~~~~~d~~~~~~l~~~-----~~~~   69 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---ID----ALVINGDCTKIKTLEDA-----GIED   69 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CS----SEEEESCTTSHHHHHHT-----TTTT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---cC----cEEEEcCCCCHHHHHHc-----Cccc
Confidence            357888876  666666665542 256899999988766544432   12    4456666532  22221     1257


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      +|+|++..........+..+.+.++++-+++
T Consensus        70 ~d~vi~~~~~~~~~~~~~~~~~~~~~~~ii~  100 (140)
T 1lss_A           70 ADMYIAVTGKEEVNLMSSLLAKSYGINKTIA  100 (140)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCEEEEeeCCchHHHHHHHHHHHcCCCEEEE
Confidence            8999986543333333444556677765444

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=94.62  E-value=0.079  Score=42.80  Aligned_cols=63  Identities=14%  Similarity=0.114  Sum_probs=44.9

Q ss_pred             cHHHHHHHHHHH----HHcCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCcchHHHHHHHHHh
Q 029803            4 LTIHGQLMAMLL----RLVNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKK   66 (187)
Q Consensus         4 ~~~~~~ll~~l~----~~~~~~~vLeiG~g~G~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~   66 (187)
                      ++..+++|...+    ....+-+|+|+|+|.|.....++..+.    ...+++.||+||...+.-++.+..
T Consensus       118 S~~FGe~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          118 SPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            444455544332    223467999999999998888776542    134899999999998888888764

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=94.60  E-value=0.16  Score=40.94  Aligned_cols=100  Identities=14%  Similarity=0.040  Sum_probs=63.8

Q ss_pred             HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch-------------
Q 029803           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-------------   80 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-------------   80 (187)
                      +..++++||-+|+  |.|..++.+++..  +.++++++.+++.++.+++    .+...-+.....+.             
T Consensus       217 ~~~~g~~VlV~GasG~iG~~a~qla~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~  290 (447)
T 4a0s_A          217 QMKQGDIVLIWGASGGLGSYAIQFVKNG--GGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVE  290 (447)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccch
Confidence            4567789999996  5677888888875  5799999988887776643    35432111111110             


Q ss_pred             -----HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           81 -----LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        81 -----~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                           .+.+....     ...+|++|-....    ..++.+++.|+++|.++.-.
T Consensus       291 ~~~~~~~~v~~~~-----g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G  336 (447)
T 4a0s_A          291 TGRKLAKLVVEKA-----GREPDIVFEHTGR----VTFGLSVIVARRGGTVVTCG  336 (447)
T ss_dssp             HHHHHHHHHHHHH-----SSCCSEEEECSCH----HHHHHHHHHSCTTCEEEESC
T ss_pred             hhhHHHHHHHHHh-----CCCceEEEECCCc----hHHHHHHHHHhcCCEEEEEe
Confidence                 11222221     3579988754322    36788889999999998854

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=94.35  E-value=0.18  Score=39.64  Aligned_cols=97  Identities=20%  Similarity=0.165  Sum_probs=59.9

Q ss_pred             HcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           17 LVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ..++++||-+|  .+.|..++.+++..  +.+|++++ +++..+.++    ..+...   ++..+..+....+..    .
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~--Ga~Vi~~~-~~~~~~~~~----~lGa~~---v~~~~~~~~~~~~~~----~  246 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAW--DAHVTAVC-SQDASELVR----KLGADD---VIDYKSGSVEEQLKS----L  246 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEE-CGGGHHHHH----HTTCSE---EEETTSSCHHHHHHT----S
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEe-ChHHHHHHH----HcCCCE---EEECCchHHHHHHhh----c
Confidence            45678999999  45778888888875  46899888 666665553    345321   222211122222221    2


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+|+||-.....  ...++.+++.++++|.++.-
T Consensus       247 ~g~D~vid~~g~~--~~~~~~~~~~l~~~G~iv~~  279 (375)
T 2vn8_A          247 KPFDFILDNVGGS--TETWAPDFLKKWSGATYVTL  279 (375)
T ss_dssp             CCBSEEEESSCTT--HHHHGGGGBCSSSCCEEEES
T ss_pred             CCCCEEEECCCCh--hhhhHHHHHhhcCCcEEEEe
Confidence            5799887543221  13456778999999999874

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=94.26  E-value=0.54  Score=31.79  Aligned_cols=97  Identities=13%  Similarity=0.059  Sum_probs=58.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc-chHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCC
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNR-ETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG   95 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~-~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~   95 (187)
                      ..+|+-+|+  |..+..+++.+. .+.+|+.+|.++ +..+..++..     ...+.++.+|+.+  .+...     .-.
T Consensus         3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a-----~i~   70 (153)
T 1id1_A            3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKA-----GID   70 (153)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHH-----TTT
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHc-----Chh
Confidence            457888775  777777766552 256899999974 4444444332     1237788898754  33332     135


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..|+|++...............+.+.|...++.
T Consensus        71 ~ad~vi~~~~~d~~n~~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           71 RCRAILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             TCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             hCCEEEEecCChHHHHHHHHHHHHHCCCCEEEE
Confidence            789998865443333344445566667666665

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=94.17  E-value=0.12  Score=39.67  Aligned_cols=89  Identities=13%  Similarity=0.120  Sum_probs=58.6

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +..++++||-+|+| .|..++.+|+..  +.+|++++ +++..+.+++.    |.   -.++. |    ...+      .
T Consensus       139 ~~~~g~~VlV~GaG~vG~~a~qlak~~--Ga~Vi~~~-~~~~~~~~~~l----Ga---~~v~~-d----~~~v------~  197 (315)
T 3goh_A          139 PLTKQREVLIVGFGAVNNLLTQMLNNA--GYVVDLVS-ASLSQALAAKR----GV---RHLYR-E----PSQV------T  197 (315)
T ss_dssp             CCCSCCEEEEECCSHHHHHHHHHHHHH--TCEEEEEC-SSCCHHHHHHH----TE---EEEES-S----GGGC------C
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHc--CCEEEEEE-ChhhHHHHHHc----CC---CEEEc-C----HHHh------C
Confidence            34577899999985 477888888876  46999999 89888887652    42   12222 3    1221      3


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+|+||-.....    .+..+++.|+++|.++.-
T Consensus       198 ~g~Dvv~d~~g~~----~~~~~~~~l~~~G~~v~~  228 (315)
T 3goh_A          198 QKYFAIFDAVNSQ----NAAALVPSLKANGHIICI  228 (315)
T ss_dssp             SCEEEEECC-----------TTGGGEEEEEEEEEE
T ss_pred             CCccEEEECCCch----hHHHHHHHhcCCCEEEEE
Confidence            6899887432221    235678999999998874

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=94.16  E-value=0.18  Score=39.59  Aligned_cols=94  Identities=16%  Similarity=0.111  Sum_probs=59.0

Q ss_pred             CCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc---chHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           20 AKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR---ETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        20 ~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~---~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      +++||-+|+| .|..++.+++..  +.+|++++.++   +..+.+++    .+.. .+.  ..+..+.+...      ..
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~--Ga~Vi~~~~~~~~~~~~~~~~~----~ga~-~v~--~~~~~~~~~~~------~~  245 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY--GLEVWMANRREPTEVEQTVIEE----TKTN-YYN--SSNGYDKLKDS------VG  245 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH--TCEEEEEESSCCCHHHHHHHHH----HTCE-EEE--CTTCSHHHHHH------HC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCccchHHHHHHHH----hCCc-eec--hHHHHHHHHHh------CC
Confidence            7899999974 355666677664  46999999988   66665553    3432 121  11222222221      15


Q ss_pred             ceeEEEEeCCCcccHHHH-HHHHhccCCCeEEEEeCC
Q 029803           96 SFDYAFVDADKDNYCNYH-ERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~-~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|+||-.....   ..+ +.+++.|+++|.++.-..
T Consensus       246 ~~d~vid~~g~~---~~~~~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          246 KFDVIIDATGAD---VNILGNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             CEEEEEECCCCC---THHHHHHGGGEEEEEEEEECSC
T ss_pred             CCCEEEECCCCh---HHHHHHHHHHHhcCCEEEEEec
Confidence            799888654332   245 778899999999987543

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.07  E-value=0.66  Score=37.66  Aligned_cols=102  Identities=14%  Similarity=0.213  Sum_probs=60.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhc---C---------CCCcEEEEEcchHHHHH
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKA---G---------VDHKINFIESEALSVLD   85 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~---~---------~~~~~~~~~~d~~~~~~   85 (187)
                      ...+|--||+  |+++..+|..+.. +.+|+++|.+++.++..++.....   +         ...++++ ..|..+.+ 
T Consensus         7 ~~~~~~vIGl--G~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~-ttd~~ea~-   82 (446)
T 4a7p_A            7 GSVRIAMIGT--GYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSF-TTDLAEGV-   82 (446)
T ss_dssp             CCCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE-ESCHHHHH-
T ss_pred             CceEEEEEcC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEE-ECCHHHHH-
Confidence            3456777776  6666666555432 568999999999877665421000   0         0112332 23433321 


Q ss_pred             HHhhcccCCCceeEEEEeC-CCc----------ccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           86 QLLKYSENEGSFDYAFVDA-DKD----------NYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~-~~~----------~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                               ...|+||+.. .+.          .....++.+.+.|++|.++|...+..
T Consensus        83 ---------~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~  132 (446)
T 4a7p_A           83 ---------KDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVP  132 (446)
T ss_dssp             ---------TTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCC
T ss_pred             ---------hcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence                     4578998863 222          24566777888999988888765543

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=94.05  E-value=0.19  Score=41.21  Aligned_cols=58  Identities=9%  Similarity=-0.082  Sum_probs=43.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      .+++|+.||.|..++-+..+   +. .+.++|+++.+.+.-+.|+..   .....++.+|+.++.
T Consensus        89 ~~viDLFaG~GGlslG~~~a---G~~~v~avE~d~~A~~ty~~N~~~---~p~~~~~~~DI~~i~  147 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESI---GGQCVFTSEWNKHAVRTYKANHYC---DPATHHFNEDIRDIT  147 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTT---TEEEEEEECCCHHHHHHHHHHSCC---CTTTCEEESCTHHHH
T ss_pred             ceEEEecCCccHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHhccc---CCCcceeccchhhhh
Confidence            47999999999999888764   33 478899999888887777521   123456778887754

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.01  E-value=0.66  Score=37.48  Aligned_cols=104  Identities=13%  Similarity=0.194  Sum_probs=60.6

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHH------------HHhcCCCCcEEEEEcchHHH
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSV   83 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~~~~~~~d~~~~   83 (187)
                      +..+-++|--||+  |+.+..+|..+..+.+|+++|.+++.++..++.            +.. + ..++++ ..|..+.
T Consensus        32 r~~~~mkIaVIGl--G~mG~~lA~~La~G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~-~-~~~l~~-ttd~~ea  106 (432)
T 3pid_A           32 RGSEFMKITISGT--GYVGLSNGVLIAQNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE-K-PLNFRA-TTDKHDA  106 (432)
T ss_dssp             ---CCCEEEEECC--SHHHHHHHHHHHTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-S-CCCEEE-ESCHHHH
T ss_pred             cccCCCEEEEECc--CHHHHHHHHHHHcCCeEEEEecCHHHhhHHhccCCccccccHHHHHhh-c-cCCeEE-EcCHHHH
Confidence            3445567888887  555555555554467999999999888766542            111 0 112322 2343332


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCc-----------ccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      +          ...|+||+.....           ......+.+.+ |++|.+++...+...|
T Consensus       107 ~----------~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pg  158 (432)
T 3pid_A          107 Y----------RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVG  158 (432)
T ss_dssp             H----------TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTT
T ss_pred             H----------hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChH
Confidence            1          4579998864221           23455677778 9999888876555433

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.00  E-value=0.28  Score=32.66  Aligned_cols=93  Identities=11%  Similarity=0.109  Sum_probs=54.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCc
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~   96 (187)
                      .++|+-+|+  |..+..+++.+. .+.+|+.+|.+++.++.+++.        ...++.+|..+  .+...     ....
T Consensus         6 ~~~v~I~G~--G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~--------~~~~~~gd~~~~~~l~~~-----~~~~   70 (141)
T 3llv_A            6 RYEYIVIGS--EAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE--------GFDAVIADPTDESFYRSL-----DLEG   70 (141)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--------TCEEEECCTTCHHHHHHS-----CCTT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC--------CCcEEECCCCCHHHHHhC-----Cccc
Confidence            457899887  556666665542 257899999998876655431        25677888754  33332     1357


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +|+|++...........-...+.+. ...++.
T Consensus        71 ~d~vi~~~~~~~~n~~~~~~a~~~~-~~~iia  101 (141)
T 3llv_A           71 VSAVLITGSDDEFNLKILKALRSVS-DVYAIV  101 (141)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHHC-CCCEEE
T ss_pred             CCEEEEecCCHHHHHHHHHHHHHhC-CceEEE
Confidence            8999886542222222233334455 444444

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.98  E-value=0.15  Score=40.50  Aligned_cols=97  Identities=19%  Similarity=0.182  Sum_probs=58.7

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE---------cc---------
Q 029803           19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE---------SE---------   79 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~---------~d---------   79 (187)
                      ++.+|+-||+| .|..+..++..+  +.+|+.+|.+++.++.+++.    |.    +++.         +.         
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~l----Ga----~~~~l~~~~~~~~gya~~~~~~~~  252 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRL--GAKTTGYDVRPEVAEQVRSV----GA----QWLDLGIDAAGEGGYARELSEAER  252 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSGGGHHHHHHT----TC----EECCCC-------------CHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc----CC----eEEeccccccccccchhhhhHHHH
Confidence            67899999997 455666666665  46999999999887776642    21    1111         00         


Q ss_pred             --hHHHHHHHhhcccCCCceeEEEEeCC-C--cccHHHHHHHHhccCCCeEEEEeCC
Q 029803           80 --ALSVLDQLLKYSENEGSFDYAFVDAD-K--DNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        80 --~~~~~~~~~~~~~~~~~~D~i~~d~~-~--~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                        ..+.+.+.      -...|+|+.... +  ....-+-+.+.+.+|||++|+=-.+
T Consensus       253 ~~~~~~l~e~------l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~  303 (381)
T 3p2y_A          253 AQQQQALEDA------ITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAG  303 (381)
T ss_dssp             HHHHHHHHHH------HTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTG
T ss_pred             hhhHHHHHHH------HhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeC
Confidence              01122232      267999986531 1  1111123677889999888775433

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=93.98  E-value=0.23  Score=38.85  Aligned_cols=99  Identities=14%  Similarity=0.100  Sum_probs=60.9

Q ss_pred             HHHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc--hHHHHHHHhhcc
Q 029803           15 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE--ALSVLDQLLKYS   91 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~   91 (187)
                      .+..++++||-+|+| .|..++.+|+... +.+|+++|.+++..+.+++    .|...   ++...  ..+.+..+.   
T Consensus       182 ~~~~~g~~VlV~GaG~vG~~avqlak~~~-Ga~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~~~~~~v~~~~---  250 (359)
T 1h2b_A          182 RTLYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAER----LGADH---VVDARRDPVKQVMELT---  250 (359)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHH----TTCSE---EEETTSCHHHHHHHHT---
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHH----hCCCE---EEeccchHHHHHHHHh---
Confidence            345677899999974 4566777887752 4689999999888777753    34321   22211  223333331   


Q ss_pred             cCCCceeEEEEeCCCcccHH--HHHHHHhccCCCeEEEEeC
Q 029803           92 ENEGSFDYAFVDADKDNYCN--YHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~~~~--~~~~~~~~L~~gG~lv~~~  130 (187)
                       ....+|+||-...   ...  .++.+++.  ++|.++.-.
T Consensus       251 -~g~g~Dvvid~~G---~~~~~~~~~~~~~--~~G~~v~~g  285 (359)
T 1h2b_A          251 -RGRGVNVAMDFVG---SQATVDYTPYLLG--RMGRLIIVG  285 (359)
T ss_dssp             -TTCCEEEEEESSC---CHHHHHHGGGGEE--EEEEEEECC
T ss_pred             -CCCCCcEEEECCC---CchHHHHHHHhhc--CCCEEEEEe
Confidence             1237998875432   223  56667777  899888743

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=93.93  E-value=0.061  Score=41.39  Aligned_cols=91  Identities=11%  Similarity=0.107  Sum_probs=60.2

Q ss_pred             EEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           22 KTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        22 ~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      +||-+|+  +.|..++.+|+..  +.+|++++.+++..+.+++    .|...   ++..+..+....+     ....+|+
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~---vi~~~~~~~~~~~-----~~~~~d~  214 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL--GYQVAAVSGRESTHGYLKS----LGANR---ILSRDEFAESRPL-----EKQLWAG  214 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHH----HTCSE---EEEGGGSSCCCSS-----CCCCEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh----cCCCE---EEecCCHHHHHhh-----cCCCccE
Confidence            4999986  5788899999876  5699999999998888865    34321   2211111111111     1357997


Q ss_pred             EEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803          100 AFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus       100 i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|- ..-   ...++.+++.|+++|.++.-.
T Consensus       215 v~d-~~g---~~~~~~~~~~l~~~G~iv~~G  241 (324)
T 3nx4_A          215 AID-TVG---DKVLAKVLAQMNYGGCVAACG  241 (324)
T ss_dssp             EEE-SSC---HHHHHHHHHTEEEEEEEEECC
T ss_pred             EEE-CCC---cHHHHHHHHHHhcCCEEEEEe
Confidence            664 322   237888999999999998753

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=93.60  E-value=1.7  Score=34.15  Aligned_cols=92  Identities=11%  Similarity=0.016  Sum_probs=57.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      +.++|.-||+  |..+..++..+. .+.+|+++|.+++.++.+.+    .+.    . ...+..+.+..       ....
T Consensus        21 ~~mkIgiIGl--G~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~----~g~----~-~~~s~~e~~~~-------a~~~   82 (358)
T 4e21_A           21 QSMQIGMIGL--GRMGADMVRRLRKGGHECVVYDLNVNAVQALER----EGI----A-GARSIEEFCAK-------LVKP   82 (358)
T ss_dssp             -CCEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHT----TTC----B-CCSSHHHHHHH-------SCSS
T ss_pred             cCCEEEEECc--hHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----CCC----E-EeCCHHHHHhc-------CCCC
Confidence            4568889987  444444444432 25689999999876665442    222    1 12344444443       2456


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+||+..........++.+.+.+++|.+++-
T Consensus        83 DvVi~~vp~~~v~~vl~~l~~~l~~g~iiId  113 (358)
T 4e21_A           83 RVVWLMVPAAVVDSMLQRMTPLLAANDIVID  113 (358)
T ss_dssp             CEEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             CEEEEeCCHHHHHHHHHHHHhhCCCCCEEEe
Confidence            9999876555666778888889998876654

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=93.51  E-value=0.27  Score=39.00  Aligned_cols=42  Identities=24%  Similarity=0.234  Sum_probs=31.5

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHH
Q 029803           19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLP   62 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~   62 (187)
                      ++.+|+-+|+| .|..++.+++.+  +.+|+.+|.++...+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~--Ga~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            68899999987 455566666665  4689999999887776653

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=93.41  E-value=0.13  Score=41.07  Aligned_cols=62  Identities=13%  Similarity=0.176  Sum_probs=42.6

Q ss_pred             cHHHHHHHHHHHH-----HcC--CCEEEEEcccccHHHHHHHhhCC------CCCEEEEEeCCcchHHHHHHHHH
Q 029803            4 LTIHGQLMAMLLR-----LVN--AKKTIEIGVFTGYSLLLTALTIP------EDGQITAIDVNRETYEIGLPIIK   65 (187)
Q Consensus         4 ~~~~~~ll~~l~~-----~~~--~~~vLeiG~g~G~~~~~la~~~~------~~~~v~~iD~~~~~~~~a~~~~~   65 (187)
                      ++..+++|...+.     ...  +-.|+|+|+|.|..+..+++.+.      ...+++.||.||...+.-++.+.
T Consensus        58 s~~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  132 (387)
T 1zkd_A           58 SQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  132 (387)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence            4455555554432     222  34799999999999888876542      24589999999988876666554

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=93.27  E-value=0.21  Score=40.18  Aligned_cols=95  Identities=12%  Similarity=0.052  Sum_probs=61.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCC
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~   95 (187)
                      +..+|+-+|+  |..+..+++.+. .+..|+.+|.+++.++.+++    .+    +.++.||+.+  .+...     .-.
T Consensus         3 ~~~~viIiG~--Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~g----~~vi~GDat~~~~L~~a-----gi~   67 (413)
T 3l9w_A            3 HGMRVIIAGF--GRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----FG----MKVFYGDATRMDLLESA-----GAA   67 (413)
T ss_dssp             -CCSEEEECC--SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----TT----CCCEESCTTCHHHHHHT-----TTT
T ss_pred             CCCeEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----CC----CeEEEcCCCCHHHHHhc-----CCC
Confidence            3457888876  555555555442 25789999999998887663    22    5578888854  34432     235


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..|+|++..........+-...+.+.|+..++.
T Consensus        68 ~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iia  100 (413)
T 3l9w_A           68 KAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIA  100 (413)
T ss_dssp             TCSEEEECCSSHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             ccCEEEECCCChHHHHHHHHHHHHhCCCCeEEE
Confidence            789988865443333344445577788866665

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=93.09  E-value=0.45  Score=36.46  Aligned_cols=96  Identities=10%  Similarity=-0.016  Sum_probs=60.3

Q ss_pred             HHHHcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH-HHHHHhhc
Q 029803           14 LLRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS-VLDQLLKY   90 (187)
Q Consensus        14 l~~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~   90 (187)
                      ..+..++++||-+|  .+.|..++.+|+..  +.+|++++ +++..+.++    ..+...   ++..+..+ ....    
T Consensus       147 ~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~--Ga~vi~~~-~~~~~~~~~----~lGa~~---~i~~~~~~~~~~~----  212 (321)
T 3tqh_A          147 QAEVKQGDVVLIHAGAGGVGHLAIQLAKQK--GTTVITTA-SKRNHAFLK----ALGAEQ---CINYHEEDFLLAI----  212 (321)
T ss_dssp             HTTCCTTCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEE-CHHHHHHHH----HHTCSE---EEETTTSCHHHHC----
T ss_pred             hcCCCCCCEEEEEcCCcHHHHHHHHHHHHc--CCEEEEEe-ccchHHHHH----HcCCCE---EEeCCCcchhhhh----
Confidence            34566788999996  44688888899876  56888887 444444444    345432   23222222 2222    


Q ss_pred             ccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           91 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                         ...+|+||-...   . ..++.+++.|+++|.++.-.
T Consensus       213 ---~~g~D~v~d~~g---~-~~~~~~~~~l~~~G~iv~~g  245 (321)
T 3tqh_A          213 ---STPVDAVIDLVG---G-DVGIQSIDCLKETGCIVSVP  245 (321)
T ss_dssp             ---CSCEEEEEESSC---H-HHHHHHGGGEEEEEEEEECC
T ss_pred             ---ccCCCEEEECCC---c-HHHHHHHHhccCCCEEEEeC
Confidence               257998875322   1 23378899999999998753

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=92.98  E-value=1.5  Score=31.76  Aligned_cols=94  Identities=11%  Similarity=0.038  Sum_probs=59.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS   96 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~   96 (187)
                      ..++|+-+|+  |..+..+++.+...+.|+.+|.+++.++.++     .    .+.++.+|+.+  .+...     .-..
T Consensus         8 ~~~~viI~G~--G~~G~~la~~L~~~g~v~vid~~~~~~~~~~-----~----~~~~i~gd~~~~~~l~~a-----~i~~   71 (234)
T 2aef_A            8 KSRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKKVLR-----S----GANFVHGDPTRVSDLEKA-----NVRG   71 (234)
T ss_dssp             --CEEEEESC--CHHHHHHHHHSTTSEEEEEESCGGGHHHHHH-----T----TCEEEESCTTCHHHHHHT-----TCTT
T ss_pred             CCCEEEEECC--ChHHHHHHHHHHhCCeEEEEECCHHHHHHHh-----c----CCeEEEcCCCCHHHHHhc-----Ccch
Confidence            4567888886  7888888888753333899999988665443     1    27788998864  33332     1357


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|.|++...........-...+.+.++..++.
T Consensus        72 ad~vi~~~~~d~~n~~~~~~a~~~~~~~~iia  103 (234)
T 2aef_A           72 ARAVIVDLESDSETIHCILGIRKIDESVRIIA  103 (234)
T ss_dssp             CSEEEECCSCHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             hcEEEEcCCCcHHHHHHHHHHHHHCCCCeEEE
Confidence            89988865433322333444566778766665

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=92.97  E-value=0.43  Score=33.29  Aligned_cols=95  Identities=11%  Similarity=0.096  Sum_probs=54.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-C-CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCC
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIP-E-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG   95 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~-~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~   95 (187)
                      ..+|+-+|+  |..+..+++.+. . +.+|+++|.+++..+.+++    .+    +.++.+|..+  .+...    ....
T Consensus        39 ~~~v~IiG~--G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~----~~~~  104 (183)
T 3c85_A           39 HAQVLILGM--GRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERI----LDTG  104 (183)
T ss_dssp             TCSEEEECC--SHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTB----CSCC
T ss_pred             CCcEEEECC--CHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhc----cCCC
Confidence            347888876  666666665542 2 4689999999887665442    23    4466676543  23221    0125


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+|+|++...........-...+.+.|+..++.
T Consensus       105 ~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~  137 (183)
T 3c85_A          105 HVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAA  137 (183)
T ss_dssp             CCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEE
Confidence            789998854332222222234456677777776

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.97  E-value=0.58  Score=33.68  Aligned_cols=93  Identities=17%  Similarity=0.075  Sum_probs=57.6

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCcee
Q 029803           22 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFD   98 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~D   98 (187)
                      +|+-+|+  |..+..+++.+. .+..|+.+|.+++.++...+.   .    ...++.+|+.+  .+...     .-...|
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~---~----~~~~i~gd~~~~~~l~~a-----~i~~ad   67 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK---L----KATIIHGDGSHKEILRDA-----EVSKND   67 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH---S----SSEEEESCTTSHHHHHHH-----TCCTTC
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH---c----CCeEEEcCCCCHHHHHhc-----CcccCC
Confidence            5677775  777777776552 257899999998876654432   1    25678888754  33332     135789


Q ss_pred             EEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           99 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        99 ~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ++++..........+....+.+.+...++.
T Consensus        68 ~vi~~~~~d~~n~~~~~~a~~~~~~~~iia   97 (218)
T 3l4b_C           68 VVVILTPRDEVNLFIAQLVMKDFGVKRVVS   97 (218)
T ss_dssp             EEEECCSCHHHHHHHHHHHHHTSCCCEEEE
T ss_pred             EEEEecCCcHHHHHHHHHHHHHcCCCeEEE
Confidence            998865443333344444555556666665

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=92.90  E-value=0.33  Score=38.87  Aligned_cols=42  Identities=24%  Similarity=0.232  Sum_probs=33.4

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHH
Q 029803           19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLP   62 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~   62 (187)
                      ++.+|+-||+| .|..+..++..+  +.+|+.+|.++..++.+++
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~  231 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRL--GAVVSATDVRPAAKEQVAS  231 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSTTHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence            67899999998 566666777766  5699999999988776654

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=92.88  E-value=0.2  Score=38.64  Aligned_cols=96  Identities=13%  Similarity=-0.058  Sum_probs=62.5

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  100 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  100 (187)
                      .+|||+.||.|..++-+-.+-  -.-+.++|+++.+.+.-+.|+.       .+++.+|+.+.-..      .-...|++
T Consensus         1 mkvidLFsG~GG~~~G~~~aG--~~~v~a~e~d~~a~~ty~~N~~-------~~~~~~DI~~i~~~------~~~~~D~l   65 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAG--FRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSD------EFPKCDGI   65 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTT--CEEEEEEECCTTTHHHHHHHCC-------SEEEESCGGGCCGG------GSCCCSEE
T ss_pred             CeEEEeCcCccHHHHHHHHCC--CEEEEEEeCCHHHHHHHHHHCC-------CCcccCChhhCCHh------hCCcccEE
Confidence            379999999999988876641  2346789999999988888752       35778898764222      13578988


Q ss_pred             EEeCCC------------ccc----HHHHHHHHhccCCCeEEEEeCCC
Q 029803          101 FVDADK------------DNY----CNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus       101 ~~d~~~------------~~~----~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +.....            .+.    -..+-.+.+.++|. +++++|+-
T Consensus        66 ~ggpPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk-~~~~ENV~  112 (331)
T 3ubt_Y           66 IGGPPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPI-FFLAENVK  112 (331)
T ss_dssp             ECCCCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCS-EEEEEECC
T ss_pred             EecCCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCe-EEEeeeec
Confidence            754211            111    11122345677884 77787774

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=92.83  E-value=0.27  Score=38.96  Aligned_cols=95  Identities=11%  Similarity=0.023  Sum_probs=65.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHHhhcccCCCce
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .+.+||.++-+.|..++.++..     .++.+.-|--.....+.|++.+++.+ .+++...-  +   .      ....|
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~-----~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~~--~---~------~~~~~  101 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH-----KPYSIGDSYISELATRENLRLNGIDESSVKFLDST--A---D------YPQQP  101 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG-----CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEETT--S---C------CCSSC
T ss_pred             CCCCEEEECCCCCHHHHhhccC-----CceEEEhHHHHHHHHHHHHHHcCCCccceEecccc--c---c------cccCC
Confidence            4468999999999999988753     33555434444456778888888864 35554321  1   1      14689


Q ss_pred             eEEEEeCCCc--ccHHHHHHHHhccCCCeEEEEe
Q 029803           98 DYAFVDADKD--NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        98 D~i~~d~~~~--~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |+|++...+.  .....+.++...|++|+.+++.
T Consensus       102 ~~v~~~lpk~~~~l~~~L~~l~~~l~~~~~i~~~  135 (375)
T 4dcm_A          102 GVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAG  135 (375)
T ss_dssp             SEEEEECCSCHHHHHHHHHHHHTTCCTTSEEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHhhCCCCCEEEEE
Confidence            9999876442  3445677888999999988764

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=92.83  E-value=0.29  Score=38.41  Aligned_cols=70  Identities=17%  Similarity=0.137  Sum_probs=45.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS   96 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~   96 (187)
                      +.++|+-+||  |..+..++..+.....|+..|.+.+.++.+++         ....+..|+.+  .+..+.      ..
T Consensus        15 ~~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~---------~~~~~~~d~~d~~~l~~~~------~~   77 (365)
T 3abi_A           15 RHMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE---------FATPLKVDASNFDKLVEVM------KE   77 (365)
T ss_dssp             -CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT---------TSEEEECCTTCHHHHHHHH------TT
T ss_pred             CccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc---------cCCcEEEecCCHHHHHHHH------hC
Confidence            4568999998  66777777666657889999998876665432         24445555532  334432      56


Q ss_pred             eeEEEEeCC
Q 029803           97 FDYAFVDAD  105 (187)
Q Consensus        97 ~D~i~~d~~  105 (187)
                      .|+|+.-..
T Consensus        78 ~DvVi~~~p   86 (365)
T 3abi_A           78 FELVIGALP   86 (365)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEEecC
Confidence            898876543

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=92.56  E-value=0.63  Score=37.75  Aligned_cols=39  Identities=21%  Similarity=0.233  Sum_probs=26.9

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHH
Q 029803           21 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGL   61 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~   61 (187)
                      .+|--||+  ||.++.+|..+. .+.+|+++|++++.++..+
T Consensus        22 ~~IaViGl--GYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln   61 (444)
T 3vtf_A           22 ASLSVLGL--GYVGVVHAVGFALLGHRVVGYDVNPSIVERLR   61 (444)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH
T ss_pred             CEEEEEcc--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH
Confidence            46888876  666555554442 2579999999998776654

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=92.53  E-value=2.8  Score=32.12  Aligned_cols=91  Identities=12%  Similarity=-0.012  Sum_probs=54.6

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-C-CEEEEEeCCcchHH---HHHHHHHhcCCCCcEEEEEc-chHHHHHHHhhcccC
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPE-D-GQITAIDVNRETYE---IGLPIIKKAGVDHKINFIES-EALSVLDQLLKYSEN   93 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~-~-~~v~~iD~~~~~~~---~a~~~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~   93 (187)
                      .++|--||+  |..+..++..+.. + .+|+++|.+++..+   ...+.+...+.       .. +..+.          
T Consensus        24 ~m~IgvIG~--G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-------~~~s~~e~----------   84 (317)
T 4ezb_A           24 MTTIAFIGF--GEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-------EPLDDVAG----------   84 (317)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-------EEESSGGG----------
T ss_pred             CCeEEEECc--cHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-------CCCCHHHH----------
Confidence            357888887  5555555554422 4 58999999874222   22222333332       22 32222          


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      -...|+||+..........++.+.+.++++.+++-.
T Consensus        85 ~~~aDvVi~avp~~~~~~~~~~i~~~l~~~~ivv~~  120 (317)
T 4ezb_A           85 IACADVVLSLVVGAATKAVAASAAPHLSDEAVFIDL  120 (317)
T ss_dssp             GGGCSEEEECCCGGGHHHHHHHHGGGCCTTCEEEEC
T ss_pred             HhcCCEEEEecCCHHHHHHHHHHHhhcCCCCEEEEC
Confidence            145799998766555566678888889998776653

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=92.46  E-value=0.29  Score=37.76  Aligned_cols=89  Identities=15%  Similarity=0.134  Sum_probs=55.0

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCC--EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           21 KKTIEIGVFTGYSLLLTALTIP-EDG--QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~-~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      ++|.-||+|  ..+..++..+. .+.  +|+++|.+++.++.+++    .+...   ....+..+.   .      -...
T Consensus        34 ~kI~IIG~G--~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~----~G~~~---~~~~~~~~~---~------~~~a   95 (314)
T 3ggo_A           34 QNVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIID---EGTTSIAKV---E------DFSP   95 (314)
T ss_dssp             SEEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCS---EEESCTTGG---G------GGCC
T ss_pred             CEEEEEeeC--HHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH----CCCcc---hhcCCHHHH---h------hccC
Confidence            689999975  33333333331 133  89999999987766543    34321   122232220   1      1468


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      |+||+..........++++.+.++++.+++
T Consensus        96 DvVilavp~~~~~~vl~~l~~~l~~~~iv~  125 (314)
T 3ggo_A           96 DFVMLSSPVRTFREIAKKLSYILSEDATVT  125 (314)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred             CEEEEeCCHHHHHHHHHHHhhccCCCcEEE
Confidence            999997766666778888888899887654

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.30  E-value=1.3  Score=32.79  Aligned_cols=79  Identities=15%  Similarity=0.164  Sum_probs=46.8

Q ss_pred             CCCEEEEEccc-ccHHHHH-HHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEEE
Q 029803           19 NAKKTIEIGVF-TGYSLLL-TALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIE   77 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~-la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~   77 (187)
                      +..+|+-+|+| .|...+. ++.. . -++++.+|.+.                   ...+.+.+.+...+..-.++.+.
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~-G-v~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  107 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASA-G-VGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN  107 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHH-T-CSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHc-C-CCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEe
Confidence            55789999986 2332222 3322 2 36999999887                   66777777776644333456655


Q ss_pred             cchHH-HHHHHhhcccCCCceeEEEEeCC
Q 029803           78 SEALS-VLDQLLKYSENEGSFDYAFVDAD  105 (187)
Q Consensus        78 ~d~~~-~~~~~~~~~~~~~~~D~i~~d~~  105 (187)
                      .+..+ .+..+.      ..+|+|+...+
T Consensus       108 ~~~~~~~~~~~~------~~~DvVi~~~d  130 (249)
T 1jw9_B          108 ALLDDAELAALI------AEHDLVLDCTD  130 (249)
T ss_dssp             SCCCHHHHHHHH------HTSSEEEECCS
T ss_pred             ccCCHhHHHHHH------hCCCEEEEeCC
Confidence            44432 223332      47998886543

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=92.23  E-value=1.4  Score=36.01  Aligned_cols=103  Identities=13%  Similarity=0.094  Sum_probs=58.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhc---CC---------CCcEEEEEcchHHH
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKA---GV---------DHKINFIESEALSV   83 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~---~~---------~~~~~~~~~d~~~~   83 (187)
                      +....+|.-||+|  +.+..+|..+. .+.+|+++|.+++.++..++.....   ++         ..++.+ ..|..+.
T Consensus         5 ~~~~~~I~VIG~G--~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~-ttd~~~a   81 (478)
T 2y0c_A            5 HHGSMNLTIIGSG--SVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRF-STDIEAA   81 (478)
T ss_dssp             --CCCEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE-ECCHHHH
T ss_pred             cCCCceEEEECcC--HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEE-ECCHHHH
Confidence            3456789999885  33333333332 1568999999998777665431000   00         012322 2233222


Q ss_pred             HHHHhhcccCCCceeEEEEeCCC----------cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDADK----------DNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~----------~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +          ...|+||+....          ......++.+.+.++++.+++...+.
T Consensus        82 ~----------~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv  130 (478)
T 2y0c_A           82 V----------AHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTV  130 (478)
T ss_dssp             H----------HHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred             h----------hcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence            2          357999987433          34556777788899998877664433

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=92.21  E-value=0.43  Score=32.41  Aligned_cols=98  Identities=12%  Similarity=0.026  Sum_probs=54.9

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~   93 (187)
                      ..+..+|+-+|+  |..+..++..+. .+.+|+.+|.+++.++.+++   ..    ...++.+|..+  .+...     .
T Consensus        16 ~~~~~~v~IiG~--G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~~----g~~~~~~d~~~~~~l~~~-----~   81 (155)
T 2g1u_A           16 KQKSKYIVIFGC--GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS---EF----SGFTVVGDAAEFETLKEC-----G   81 (155)
T ss_dssp             -CCCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---TC----CSEEEESCTTSHHHHHTT-----T
T ss_pred             ccCCCcEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---cC----CCcEEEecCCCHHHHHHc-----C
Confidence            446678999987  555555554442 25689999999887654331   11    24456666532  22221     1


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ...+|+|++.............+.+.+.+...++.
T Consensus        82 ~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~  116 (155)
T 2g1u_A           82 MEKADMVFAFTNDDSTNFFISMNARYMFNVENVIA  116 (155)
T ss_dssp             GGGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred             cccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEE
Confidence            24689998865443333333344455555556655

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=92.19  E-value=1.5  Score=33.72  Aligned_cols=93  Identities=12%  Similarity=0.043  Sum_probs=59.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF   97 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   97 (187)
                      .++++-+|+  |..+..+++.+...+.++.+|.+++.++ +++        ..+.++.||+.+  .+...     .-...
T Consensus       115 ~~~viI~G~--G~~g~~l~~~L~~~g~v~vid~~~~~~~-~~~--------~~~~~i~gd~~~~~~L~~a-----~i~~a  178 (336)
T 1lnq_A          115 SRHVVICGW--SESTLECLRELRGSEVFVLAEDENVRKK-VLR--------SGANFVHGDPTRVSDLEKA-----NVRGA  178 (336)
T ss_dssp             -CEEEEESC--CHHHHHHHTTGGGSCEEEEESCGGGHHH-HHH--------TTCEEEESCTTSHHHHHHT-----CSTTE
T ss_pred             cCCEEEECC--cHHHHHHHHHHHhCCcEEEEeCChhhhh-HHh--------CCcEEEEeCCCCHHHHHhc-----Chhhc
Confidence            457888775  7888888877743333999999998876 543        237789999865  33332     23678


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |.+++........-..-...+.+.|+..++.
T Consensus       179 ~~vi~~~~~d~~n~~~~~~ar~~~~~~~iia  209 (336)
T 1lnq_A          179 RAVIVDLESDSETIHCILGIRKIDESVRIIA  209 (336)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             cEEEEcCCccHHHHHHHHHHHHHCCCCeEEE
Confidence            9888865433222233344567778766665

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=92.15  E-value=0.4  Score=38.34  Aligned_cols=41  Identities=22%  Similarity=0.209  Sum_probs=31.3

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHH
Q 029803           19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGL   61 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~   61 (187)
                      ++.+|+-+|+| .|..++.++..+  +.+|+.+|.+++..+.++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~--Ga~V~v~D~~~~~~~~~~  212 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQ  212 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCGGGHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHH
Confidence            57899999987 455566667666  468999999998777653

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=92.01  E-value=1.4  Score=27.66  Aligned_cols=72  Identities=15%  Similarity=0.075  Sum_probs=44.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CC-CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCC
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIP-ED-GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG   95 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~-~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~   95 (187)
                      .++|+-+|+  |..+..++..+. .+ .+|+.+|.+++..+...    .    ..+..+..|..+  .+...      -.
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~------~~   68 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKA------LG   68 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHH------TT
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHH------Hc
Confidence            467999988  666555554442 24 68999999887665443    1    235566666543  23333      25


Q ss_pred             ceeEEEEeCCCc
Q 029803           96 SFDYAFVDADKD  107 (187)
Q Consensus        96 ~~D~i~~d~~~~  107 (187)
                      .+|+|+......
T Consensus        69 ~~d~vi~~~~~~   80 (118)
T 3ic5_A           69 GFDAVISAAPFF   80 (118)
T ss_dssp             TCSEEEECSCGG
T ss_pred             CCCEEEECCCch
Confidence            789998765433

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=92.00  E-value=2.4  Score=31.16  Aligned_cols=106  Identities=20%  Similarity=0.249  Sum_probs=61.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-EN   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~   93 (187)
                      .+++++|-.|++.| .+..+++.+ ..+.+|+.++.+++.++...+.+     ..++.++.+|..+.  ...+.+.- ..
T Consensus         6 l~gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (255)
T 4eso_A            6 YQGKKAIVIGGTHG-MGLATVRRLVEGGAEVLLTGRNESNIARIREEF-----GPRVHALRSDIADLNEIAVLGAAAGQT   79 (255)
T ss_dssp             TTTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----GGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCCHHHHHHHHHHHHHH
Confidence            46788888886544 444444443 23689999999988776665554     24688888886432  12111000 00


Q ss_pred             CCceeEEEEeCCCc-----------cc-----------HHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKD-----------NY-----------CNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~-----------~~-----------~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+++|.++..+...           .+           ....+.+.+.++++|.|+.-
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i  137 (255)
T 4eso_A           80 LGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT  137 (255)
T ss_dssp             HSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence            25799888764211           11           11345556777778877763

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=91.94  E-value=0.31  Score=35.99  Aligned_cols=87  Identities=17%  Similarity=0.143  Sum_probs=52.2

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CC----EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPE-DG----QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~-~~----~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ++|.-||+|  ..+..++..+.. +.    +|+.+|.+++.++...+.+   +    +. ...+..+.+          .
T Consensus         3 ~~i~iIG~G--~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~---g----~~-~~~~~~e~~----------~   62 (247)
T 3gt0_A            3 KQIGFIGCG--NMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY---G----LT-TTTDNNEVA----------K   62 (247)
T ss_dssp             CCEEEECCS--HHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH---C----CE-ECSCHHHHH----------H
T ss_pred             CeEEEECcc--HHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh---C----CE-EeCChHHHH----------H
Confidence            467788875  444444433311 22    8999999988776665433   3    22 123333332          3


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      ..|+||+...+......++.+.+.++++.+++
T Consensus        63 ~aDvVilav~~~~~~~v~~~l~~~l~~~~~vv   94 (247)
T 3gt0_A           63 NADILILSIKPDLYASIINEIKEIIKNDAIIV   94 (247)
T ss_dssp             HCSEEEECSCTTTHHHHC---CCSSCTTCEEE
T ss_pred             hCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEE
Confidence            47999998766667777888878888887766

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=91.91  E-value=3.1  Score=31.32  Aligned_cols=83  Identities=17%  Similarity=0.186  Sum_probs=47.6

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcc-cC
Q 029803           19 NAKKTIEIGVFT-GYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-EN   93 (187)
Q Consensus        19 ~~~~vLeiG~g~-G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~   93 (187)
                      +++++|-.|++. ...+..+++.+ ..+.+|+.++.+++..+.+.+..+..+   .+.++.+|..+  .+..+.+.- ..
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            467899988743 12333333332 136899999999877666666555544   35678888643  122211100 00


Q ss_pred             CCceeEEEEeC
Q 029803           94 EGSFDYAFVDA  104 (187)
Q Consensus        94 ~~~~D~i~~d~  104 (187)
                      .+++|.++..+
T Consensus       106 ~g~iD~lVnnA  116 (296)
T 3k31_A          106 WGSLDFVVHAV  116 (296)
T ss_dssp             HSCCSEEEECC
T ss_pred             cCCCCEEEECC
Confidence            25789988765

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=91.84  E-value=0.063  Score=41.48  Aligned_cols=93  Identities=17%  Similarity=0.107  Sum_probs=58.9

Q ss_pred             EEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           22 KTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        22 ~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      +||-+|+  +.|..++.+++..  +.++++++.+++.++.+++    .+...   ++.  ..+........ .....+|+
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~--Ga~vi~~~~~~~~~~~~~~----lGa~~---v~~--~~~~~~~~~~~-~~~~~~d~  220 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQ----LGASE---VIS--REDVYDGTLKA-LSKQQWQG  220 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHH----HTCSE---EEE--HHHHCSSCCCS-SCCCCEEE
T ss_pred             eEEEECCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCCcE---EEE--CCCchHHHHHH-hhcCCccE
Confidence            8999996  5777888888875  4689999999888887764    24321   221  11110000000 01246998


Q ss_pred             EEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803          100 AFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus       100 i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|-....    ..++.+++.++++|.++.-.
T Consensus       221 vid~~g~----~~~~~~~~~l~~~G~iv~~G  247 (330)
T 1tt7_A          221 AVDPVGG----KQLASLLSKIQYGGSVAVSG  247 (330)
T ss_dssp             EEESCCT----HHHHHHHTTEEEEEEEEECC
T ss_pred             EEECCcH----HHHHHHHHhhcCCCEEEEEe
Confidence            7754322    35788899999999998754

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=91.65  E-value=0.32  Score=38.35  Aligned_cols=76  Identities=16%  Similarity=0.084  Sum_probs=46.5

Q ss_pred             cCCCEEEEEccc---ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           18 VNAKKTIEIGVF---TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        18 ~~~~~vLeiG~g---~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      .++.+||-+|+|   .|..++.+|+..  +.+|++++.+++..+.+++    .+...-+.....+..+.+..+..    .
T Consensus       169 ~~g~~vlV~gag~G~vG~~a~q~a~~~--Ga~Vi~~~~~~~~~~~~~~----lGa~~~~~~~~~~~~~~v~~~t~----~  238 (379)
T 3iup_A          169 LEGHSALVHTAAASNLGQMLNQICLKD--GIKLVNIVRKQEQADLLKA----QGAVHVCNAASPTFMQDLTEALV----S  238 (379)
T ss_dssp             HTTCSCEEESSTTSHHHHHHHHHHHHH--TCCEEEEESSHHHHHHHHH----TTCSCEEETTSTTHHHHHHHHHH----H
T ss_pred             cCCCEEEEECCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHh----CCCcEEEeCCChHHHHHHHHHhc----C
Confidence            678889998533   566677777765  5689999999988877764    45432222222333333333321    1


Q ss_pred             CceeEEEEe
Q 029803           95 GSFDYAFVD  103 (187)
Q Consensus        95 ~~~D~i~~d  103 (187)
                      ..+|+||-.
T Consensus       239 ~g~d~v~d~  247 (379)
T 3iup_A          239 TGATIAFDA  247 (379)
T ss_dssp             HCCCEEEES
T ss_pred             CCceEEEEC
Confidence            469988743

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=91.51  E-value=0.3  Score=47.83  Aligned_cols=104  Identities=12%  Similarity=0.011  Sum_probs=66.9

Q ss_pred             HHcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      +..++.+||-.|  .|.|..++.+|+..  +++|++++.+++..+.+++.+...+...   ++.....++...+... ..
T Consensus      1664 ~l~~Ge~VLI~gaaGgVG~aAiqlAk~~--Ga~Viat~~s~~k~~~l~~~~~~lga~~---v~~~~~~~~~~~i~~~-t~ 1737 (2512)
T 2vz8_A         1664 RMQPGESVLIHSGSGGVGQAAIAIALSR--GCRVFTTVGSAEKRAYLQARFPQLDETC---FANSRDTSFEQHVLRH-TA 1737 (2512)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTCCSTT---EEESSSSHHHHHHHHT-TT
T ss_pred             cCCCCCEEEEEeCChHHHHHHHHHHHHc--CCEEEEEeCChhhhHHHHhhcCCCCceE---EecCCCHHHHHHHHHh-cC
Confidence            356788999987  46778888899875  5799999988887777776543233322   2222222222222211 11


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +..+|+|+-..    ....++.+++.|+++|.++.-
T Consensus      1738 g~GvDvVld~~----g~~~l~~~l~~L~~~Gr~V~i 1769 (2512)
T 2vz8_A         1738 GKGVDLVLNSL----AEEKLQASVRCLAQHGRFLEI 1769 (2512)
T ss_dssp             SCCEEEEEECC----CHHHHHHHHTTEEEEEEEEEC
T ss_pred             CCCceEEEECC----CchHHHHHHHhcCCCcEEEEe
Confidence            34699887532    246788899999999998863

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=91.34  E-value=1.6  Score=34.22  Aligned_cols=96  Identities=7%  Similarity=0.007  Sum_probs=59.5

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHh------cCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKK------AGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~------~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .++|.-||+  |.++..++..+.. +.+|+..|.+++.++..++.-..      ..++.++.+ ..|..+.+        
T Consensus        29 ~mkI~VIGa--G~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~-t~d~~ea~--------   97 (356)
T 3k96_A           29 KHPIAILGA--GSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA-YCDLKASL--------   97 (356)
T ss_dssp             CSCEEEECC--SHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE-ESCHHHHH--------
T ss_pred             CCeEEEECc--cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE-ECCHHHHH--------
Confidence            457899988  5555555544422 45799999998877766553111      111222333 23433321        


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                        ...|+|++..........++.+.+.++++.+++.
T Consensus        98 --~~aDvVilaVp~~~~~~vl~~i~~~l~~~~ivvs  131 (356)
T 3k96_A           98 --EGVTDILIVVPSFAFHEVITRMKPLIDAKTRIAW  131 (356)
T ss_dssp             --TTCCEEEECCCHHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             --hcCCEEEECCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence              4689999976555667778888888998876654

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=91.29  E-value=2.5  Score=31.85  Aligned_cols=134  Identities=19%  Similarity=0.286  Sum_probs=74.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   90 (187)
                      .+++.+|--|.+.| .+..+++.+ ..+++|+.+|.+++.++.+.+.+   +  .+...+.+|..+      .+......
T Consensus        27 L~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~~  100 (273)
T 4fgs_A           27 LNAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKAE  100 (273)
T ss_dssp             TTTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hCCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHHH
Confidence            57788898887666 333333333 23789999999988777665444   3  346677788632      22222111


Q ss_pred             ccCCCceeEEEEeCCC-----------cccH-----------HHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCc
Q 029803           91 SENEGSFDYAFVDADK-----------DNYC-----------NYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHF  148 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~-----------~~~~-----------~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~  148 (187)
                         .++.|.++..+..           +.+.           ...+.+.+.|+.+|.||.-.. ..+....+..   ..+
T Consensus       101 ---~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS-~~~~~~~~~~---~~Y  173 (273)
T 4fgs_A          101 ---AGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGS-TAGSTGTPAF---SVY  173 (273)
T ss_dssp             ---HSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECC-GGGGSCCTTC---HHH
T ss_pred             ---cCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEee-hhhccCCCCc---hHH
Confidence               3689988866421           1111           234555688888887765322 2232222211   112


Q ss_pred             ccchHHHHHHHHHHhhc
Q 029803          149 RGSSRQAILDLNRSLAD  165 (187)
Q Consensus       149 ~~~~~~~~~~~~~~l~~  165 (187)
                      .. ...++..|-+.++.
T Consensus       174 ~a-sKaav~~ltr~lA~  189 (273)
T 4fgs_A          174 AA-SKAALRSFARNWIL  189 (273)
T ss_dssp             HH-HHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHH
Confidence            22 44556777666654

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=91.01  E-value=2.9  Score=33.22  Aligned_cols=95  Identities=11%  Similarity=0.139  Sum_probs=56.1

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHH------------HhcCCCCcEEEEEcchHHHHHHHhh
Q 029803           22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPII------------KKAGVDHKINFIESEALSVLDQLLK   89 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~------------~~~~~~~~~~~~~~d~~~~~~~~~~   89 (187)
                      +|.-||+  |+.+..++..+..+.+|+++|.+++.++..++..            .. . ..++.+ ..+..+.+     
T Consensus         2 kI~VIG~--G~vG~~~A~~La~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~-~-~~~l~~-t~~~~~~~-----   71 (402)
T 1dlj_A            2 KIAVAGS--GYVGLSLGVLLSLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS-K-QLSIKA-TLDSKAAY-----   71 (402)
T ss_dssp             EEEEECC--SHHHHHHHHHHTTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-S-CCCEEE-ESCHHHHH-----
T ss_pred             EEEEECC--CHHHHHHHHHHhCCCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHh-c-cCcEEE-eCCHHHHh-----
Confidence            5667776  7777777766644568999999988766543221            00 0 112222 22332222     


Q ss_pred             cccCCCceeEEEEeCCCc-----------ccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           90 YSENEGSFDYAFVDADKD-----------NYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                           ...|+||+.....           .....++.+.+ ++++.+++.....
T Consensus        72 -----~~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~  119 (402)
T 1dlj_A           72 -----KEAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTI  119 (402)
T ss_dssp             -----HHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCC
T ss_pred             -----cCCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCC
Confidence                 3479998865333           25667777778 8888887763333

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=90.99  E-value=3.7  Score=30.44  Aligned_cols=106  Identities=19%  Similarity=0.194  Sum_probs=61.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCC------------cchHHHHHHHHHhcCCCCcEEEEEcchHHH-
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVN------------RETYEIGLPIIKKAGVDHKINFIESEALSV-   83 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-   83 (187)
                      .+++++|-.|++.| .+..+++.+ ..+.+|+.+|.+            .+.++.+.+.+...+  .++.++.+|..+. 
T Consensus         8 l~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   84 (287)
T 3pxx_A            8 VQDKVVLVTGGARG-QGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRA   84 (287)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHH
T ss_pred             cCCCEEEEeCCCCh-HHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHH
Confidence            35678888887544 344444433 236899999986            455555555555443  4688888886431 


Q ss_pred             -----HHHHhhcccCCCceeEEEEeCCC---------cccH-----------HHHHHHHhccCCCeEEEEe
Q 029803           84 -----LDQLLKYSENEGSFDYAFVDADK---------DNYC-----------NYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        84 -----~~~~~~~~~~~~~~D~i~~d~~~---------~~~~-----------~~~~~~~~~L~~gG~lv~~  129 (187)
                           +....+.   .+++|.++..+..         +.+.           ...+.+.+.++++|.|+.-
T Consensus        85 ~v~~~~~~~~~~---~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  152 (287)
T 3pxx_A           85 AVSRELANAVAE---FGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT  152 (287)
T ss_dssp             HHHHHHHHHHHH---HSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HHHHHHHHHHHH---cCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence                 2222111   2578998876421         1111           2345566778888877763

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=90.97  E-value=0.62  Score=35.17  Aligned_cols=88  Identities=8%  Similarity=-0.008  Sum_probs=54.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-C---CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPE-D---GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~-~---~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      .++|.-||+|  ..+..++..+.. +   .+|+.+|.+++.++...+.   .+    +.. ..+..+.+          .
T Consensus         3 ~~~I~iIG~G--~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~---~g----i~~-~~~~~~~~----------~   62 (280)
T 3tri_A            3 TSNITFIGGG--NMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEK---CG----VHT-TQDNRQGA----------L   62 (280)
T ss_dssp             CSCEEEESCS--HHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHT---TC----CEE-ESCHHHHH----------S
T ss_pred             CCEEEEEccc--HHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHH---cC----CEE-eCChHHHH----------h
Confidence            3578888885  333333333211 2   2799999999877665543   23    222 23333321          4


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhc-cCCCeEEE
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKL-LKVGGIAV  127 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~-L~~gG~lv  127 (187)
                      ..|+||+...+......++++.+. ++++.+++
T Consensus        63 ~aDvVilav~p~~~~~vl~~l~~~~l~~~~iii   95 (280)
T 3tri_A           63 NADVVVLAVKPHQIKMVCEELKDILSETKILVI   95 (280)
T ss_dssp             SCSEEEECSCGGGHHHHHHHHHHHHHTTTCEEE
T ss_pred             cCCeEEEEeCHHHHHHHHHHHHhhccCCCeEEE
Confidence            679999987666777888888877 87765655

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=90.94  E-value=3.6  Score=30.20  Aligned_cols=104  Identities=6%  Similarity=-0.027  Sum_probs=62.1

Q ss_pred             CCCEEEEEccc----ccH-HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHH
Q 029803           19 NAKKTIEIGVF----TGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQL   87 (187)
Q Consensus        19 ~~~~vLeiG~g----~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~   87 (187)
                      +++++|-.|++    .|. .+..+++   .+.+|+.++.++...+.+.+..+..+- .++.++.+|..+      .+..+
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~---~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~   81 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHE---AGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASI   81 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHH---CCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHH
Confidence            56789998865    332 2333333   267999999887776766666655442 258888888642      22222


Q ss_pred             hhcccCCCceeEEEEeCCCc-----------ccH---------------HHHHHHHhccCCCeEEEEe
Q 029803           88 LKYSENEGSFDYAFVDADKD-----------NYC---------------NYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~~-----------~~~---------------~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...   .+++|.++..+...           ...               ...+.+.+.++++|.|+.-
T Consensus        82 ~~~---~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i  146 (266)
T 3oig_A           82 KEQ---VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTL  146 (266)
T ss_dssp             HHH---HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred             HHH---hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEE
Confidence            111   25789888764211           001               1345566788888877763

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=90.71  E-value=0.96  Score=37.20  Aligned_cols=89  Identities=12%  Similarity=0.106  Sum_probs=55.1

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...+++|+-+|+| .|......++..  +.+|+++|.++...+.+++    .+.    +.  .+..+.   +       .
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~--Ga~Viv~d~~~~~~~~A~~----~Ga----~~--~~l~e~---l-------~  328 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQ--GARVSVTEIDPINALQAMM----EGF----DV--VTVEEA---I-------G  328 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTC----EE--CCHHHH---G-------G
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH----cCC----EE--ecHHHH---H-------h
Confidence            3578899999985 344445555554  4699999999887665543    232    22  233222   1       4


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..|+|+.........  -....+.|++||+++--
T Consensus       329 ~aDvVi~atgt~~~i--~~~~l~~mk~ggilvnv  360 (494)
T 3ce6_A          329 DADIVVTATGNKDII--MLEHIKAMKDHAILGNI  360 (494)
T ss_dssp             GCSEEEECSSSSCSB--CHHHHHHSCTTCEEEEC
T ss_pred             CCCEEEECCCCHHHH--HHHHHHhcCCCcEEEEe
Confidence            689888764322211  12556789999998763

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=90.58  E-value=3.4  Score=33.44  Aligned_cols=99  Identities=16%  Similarity=0.174  Sum_probs=58.9

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCC------------CCcEEEEEcchHHHHHHH
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGV------------DHKINFIESEALSVLDQL   87 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~------------~~~~~~~~~d~~~~~~~~   87 (187)
                      ++|.-||+  |+.+..+|..+.. +.+|+++|.+++.++..++.......            ..++++ ..|..+.+   
T Consensus         3 mkI~VIG~--G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea~---   76 (450)
T 3gg2_A            3 LDIAVVGI--GYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQAV---   76 (450)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHHG---
T ss_pred             CEEEEECc--CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHHH---
Confidence            46778877  5665555554422 56899999999877766542100000            112332 23333221   


Q ss_pred             hhcccCCCceeEEEEeCCCc----------ccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           88 LKYSENEGSFDYAFVDADKD----------NYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~~----------~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                             ...|+||+.....          .....++.+.+.+++|.+++.....
T Consensus        77 -------~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv  124 (450)
T 3gg2_A           77 -------PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTV  124 (450)
T ss_dssp             -------GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred             -------hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeC
Confidence                   4579999875333          4556778888889998877765444

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=90.57  E-value=5  Score=31.17  Aligned_cols=120  Identities=13%  Similarity=0.078  Sum_probs=69.9

Q ss_pred             HHHHHHHHHc-CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC-------------------
Q 029803            9 QLMAMLLRLV-NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-------------------   68 (187)
Q Consensus         9 ~ll~~l~~~~-~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-------------------   68 (187)
                      .++..++... +...|+-+|||.-.....+.....++.+++=+|. |+.++.=++.+...+                   
T Consensus        79 ~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~  157 (334)
T 3iei_A           79 QLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDG  157 (334)
T ss_dssp             HHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCT
T ss_pred             HHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhccccccccccccc
Confidence            4455555544 5678999999887776666653212567888887 666655444444311                   


Q ss_pred             ---CCCcEEEEEcchHH--HHHHHhh-cccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEe
Q 029803           69 ---VDHKINFIESEALS--VLDQLLK-YSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        69 ---~~~~~~~~~~d~~~--~~~~~~~-~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                         ...+.+++..|..+  .+...+. .+......-++++.+     ..+....+++.+.....++..++++
T Consensus       158 ~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~~~~i~yE  229 (334)
T 3iei_A          158 HILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYE  229 (334)
T ss_dssp             TEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred             ccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCCceEEEEe
Confidence               14578899999855  3433221 111123334555554     2344566777777777666666554

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=90.34  E-value=2.9  Score=31.92  Aligned_cols=82  Identities=11%  Similarity=0.165  Sum_probs=54.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhcc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS   91 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~   91 (187)
                      .+++||-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+...+...++.++.+|..+      .+...... 
T Consensus         7 ~~k~vlVTGas~g-IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-   84 (319)
T 3ioy_A            7 AGRTAFVTGGANG-VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR-   84 (319)
T ss_dssp             TTCEEEEETTTST-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEcCCchH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh-
Confidence            5678888887544 444444444 23689999999998888887777765544478889988743      12222111 


Q ss_pred             cCCCceeEEEEeC
Q 029803           92 ENEGSFDYAFVDA  104 (187)
Q Consensus        92 ~~~~~~D~i~~d~  104 (187)
                        .+++|+++..+
T Consensus        85 --~g~id~lv~nA   95 (319)
T 3ioy_A           85 --FGPVSILCNNA   95 (319)
T ss_dssp             --TCCEEEEEECC
T ss_pred             --CCCCCEEEECC
Confidence              35789998775

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=90.33  E-value=2.1  Score=32.62  Aligned_cols=61  Identities=10%  Similarity=0.089  Sum_probs=39.9

Q ss_pred             cCCCEEEEEccc-ccHHH-HHHHhhCCCCCEEEEEeCCc------------------chHHHHHHHHHhcCCCCcEEEEE
Q 029803           18 VNAKKTIEIGVF-TGYSL-LLTALTIPEDGQITAIDVNR------------------ETYEIGLPIIKKAGVDHKINFIE   77 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~-~~la~~~~~~~~v~~iD~~~------------------~~~~~a~~~~~~~~~~~~~~~~~   77 (187)
                      .+..+|+-+|+| .|... .+|+.. . -++++.+|.+.                  ...+.+++.+...+-.-+++.+.
T Consensus        34 L~~~~VlVvGaGGlGs~va~~La~a-G-VG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~  111 (292)
T 3h8v_A           34 IRTFAVAIVGVGGVGSVTAEMLTRC-G-IGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHN  111 (292)
T ss_dssp             GGGCEEEEECCSHHHHHHHHHHHHH-T-CSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HhCCeEEEECcCHHHHHHHHHHHHc-C-CCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEec
Confidence            356799999997 34433 334443 2 47999999766                  56677778887766444566666


Q ss_pred             cch
Q 029803           78 SEA   80 (187)
Q Consensus        78 ~d~   80 (187)
                      .+.
T Consensus       112 ~~l  114 (292)
T 3h8v_A          112 YNI  114 (292)
T ss_dssp             CCT
T ss_pred             ccC
Confidence            544

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=90.28  E-value=4.6  Score=30.31  Aligned_cols=105  Identities=13%  Similarity=0.191  Sum_probs=60.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcc-hHHHHHHHHHhcCCCCcEEEEEcchHHH------HHHHhhc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY   90 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~   90 (187)
                      +++++|-.|++.| .+..+++.+ ..+.+|+.++.+++ ..+...+.++..+  .++.++.+|..+.      +......
T Consensus        46 ~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            4578888886544 444444443 23679999998765 3444444444433  4688898887431      2222111


Q ss_pred             ccCCCceeEEEEeCCC----c--------cc-----------HHHHHHHHhccCCCeEEEEe
Q 029803           91 SENEGSFDYAFVDADK----D--------NY-----------CNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~----~--------~~-----------~~~~~~~~~~L~~gG~lv~~  129 (187)
                         .+++|.++..+..    .        .+           ....+.+.+.++++|.|+.-
T Consensus       123 ---~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~i  181 (291)
T 3ijr_A          123 ---LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINT  181 (291)
T ss_dssp             ---HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             ---cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEE
Confidence               2578998876421    0        01           12455566788888877763

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=90.05  E-value=3.4  Score=30.57  Aligned_cols=81  Identities=12%  Similarity=0.128  Sum_probs=46.3

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEEE
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIE   77 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~   77 (187)
                      .+..+|+-+|+| .|...+..+.... -++++.+|.+.                   ...+.+.+++...+..-+++.+.
T Consensus        26 l~~~~VlvvG~GglG~~va~~La~~G-vg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~  104 (251)
T 1zud_1           26 LLDSQVLIIGLGGLGTPAALYLAGAG-VGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQ  104 (251)
T ss_dssp             HHTCEEEEECCSTTHHHHHHHHHHTT-CSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HhcCcEEEEccCHHHHHHHHHHHHcC-CCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEe
Confidence            356799999997 4543333333323 46899998754                   34566666666654333455555


Q ss_pred             cchH-HHHHHHhhcccCCCceeEEEEeCC
Q 029803           78 SEAL-SVLDQLLKYSENEGSFDYAFVDAD  105 (187)
Q Consensus        78 ~d~~-~~~~~~~~~~~~~~~~D~i~~d~~  105 (187)
                      .... +.+..+.      ..+|+|+...+
T Consensus       105 ~~~~~~~~~~~~------~~~DvVi~~~d  127 (251)
T 1zud_1          105 QRLTGEALKDAV------ARADVVLDCTD  127 (251)
T ss_dssp             SCCCHHHHHHHH------HHCSEEEECCS
T ss_pred             ccCCHHHHHHHH------hcCCEEEECCC
Confidence            4332 2233332      46898886443

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=90.00  E-value=0.58  Score=35.03  Aligned_cols=89  Identities=16%  Similarity=0.181  Sum_probs=52.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-CC--EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC-c
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPE-DG--QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG-S   96 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~-~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~   96 (187)
                      ++|.-||+|  ..+..++..+.. +.  +|+++|.+++..+.++    ..+...  . ...+..+.          -. .
T Consensus         2 ~~I~iIG~G--~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~----~~g~~~--~-~~~~~~~~----------~~~~   62 (281)
T 2g5c_A            2 QNVLIVGVG--FMGGSFAKSLRRSGFKGKIYGYDINPESISKAV----DLGIID--E-GTTSIAKV----------EDFS   62 (281)
T ss_dssp             CEEEEESCS--HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH----HTTSCS--E-EESCGGGG----------GGTC
T ss_pred             cEEEEEecC--HHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH----HCCCcc--c-ccCCHHHH----------hcCC
Confidence            367788874  444444443321 23  7999999988766544    234321  1 12232221          14 6


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|+|++..........++.+.+.++++.+++.
T Consensus        63 aDvVilavp~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           63 PDFVMLSSPVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CCEEEEcCCHHHHHHHHHHHHhhCCCCcEEEE
Confidence            89999876555556677777778888876554

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=89.86  E-value=2  Score=33.08  Aligned_cols=98  Identities=9%  Similarity=0.061  Sum_probs=57.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHh----cCCCCcEE--EEEcchHHHHHHHhhccc
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKK----AGVDHKIN--FIESEALSVLDQLLKYSE   92 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~----~~~~~~~~--~~~~d~~~~~~~~~~~~~   92 (187)
                      ..+|.-||+|  ..+..++..+. .+.+|+.+|.+++.++..++....    .+......  ....+..+.   +     
T Consensus         4 ~mki~iiG~G--~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----   73 (359)
T 1bg6_A            4 SKTYAVLGLG--NGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA---V-----   73 (359)
T ss_dssp             CCEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH---H-----
T ss_pred             cCeEEEECCC--HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHH---H-----
Confidence            3689999985  44444443331 156899999998877665543100    00000000  122233221   1     


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                        ..+|+|++..........++.+.+.++++..++..
T Consensus        74 --~~~D~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           74 --KDADVILIVVPAIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             --TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             --hcCCEEEEeCCchHHHHHHHHHHHhCCCCCEEEEc
Confidence              46899999766656677888888889998876653

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=89.60  E-value=0.44  Score=41.59  Aligned_cols=98  Identities=9%  Similarity=0.048  Sum_probs=59.7

Q ss_pred             HHcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      +..++++||-.|  .|.|..++.+|+..  +.+|++++.++ ..+..+     .+...-+.....+..+.+...    ..
T Consensus       342 ~l~~G~~VLI~gaaGgvG~~aiqlAk~~--Ga~V~~t~~~~-k~~~l~-----lga~~v~~~~~~~~~~~i~~~----t~  409 (795)
T 3slk_A          342 GLRPGESLLVHSAAGGVGMAAIQLARHL--GAEVYATASED-KWQAVE-----LSREHLASSRTCDFEQQFLGA----TG  409 (795)
T ss_dssp             CCCTTCCEEEESTTBHHHHHHHHHHHHT--TCCEEEECCGG-GGGGSC-----SCGGGEECSSSSTHHHHHHHH----SC
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHc--CCEEEEEeChH-Hhhhhh-----cChhheeecCChhHHHHHHHH----cC
Confidence            355778999998  46788999999986  46888888544 222211     232211111122333333332    12


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +..+|+||-....    ..++.+++.|+++|.++.-
T Consensus       410 g~GvDvVld~~gg----~~~~~~l~~l~~~Gr~v~i  441 (795)
T 3slk_A          410 GRGVDVVLNSLAG----EFADASLRMLPRGGRFLEL  441 (795)
T ss_dssp             SSCCSEEEECCCT----TTTHHHHTSCTTCEEEEEC
T ss_pred             CCCeEEEEECCCc----HHHHHHHHHhcCCCEEEEe
Confidence            4579988764322    3457888999999999874

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=89.54  E-value=0.46  Score=37.02  Aligned_cols=103  Identities=15%  Similarity=0.120  Sum_probs=54.6

Q ss_pred             HHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEE-EEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           16 RLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~-~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      +..++++||-+|+  +.|..++.+|+..  +.+++ .++.++...+ -.+.++..|..   .++..+-. ....+.....
T Consensus       164 ~~~~g~~VlV~Ga~G~vG~~aiqlak~~--Ga~vi~~~~~~~~~~~-~~~~~~~lGa~---~vi~~~~~-~~~~~~~~~~  236 (357)
T 1zsy_A          164 QLQPGDSVIQNASNSGVGQAVIQIAAAL--GLRTINVVRDRPDIQK-LSDRLKSLGAE---HVITEEEL-RRPEMKNFFK  236 (357)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHH--TCEEEEEECCCSCHHH-HHHHHHHTTCS---EEEEHHHH-HSGGGGGTTS
T ss_pred             ccCCCCEEEEeCCcCHHHHHHHHHHHHc--CCEEEEEecCccchHH-HHHHHHhcCCc---EEEecCcc-hHHHHHHHHh
Confidence            3557789999996  5788888899875  45544 4555443211 12233445543   12221110 0111111000


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ....+|+||-...   .. ....+++.|+++|.++.-
T Consensus       237 ~~~~~Dvvid~~g---~~-~~~~~~~~l~~~G~iv~~  269 (357)
T 1zsy_A          237 DMPQPRLALNCVG---GK-SSTELLRQLARGGTMVTY  269 (357)
T ss_dssp             SSCCCSEEEESSC---HH-HHHHHHTTSCTTCEEEEC
T ss_pred             CCCCceEEEECCC---cH-HHHHHHHhhCCCCEEEEE
Confidence            1125898764322   12 234578999999999874

>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}

Probab=89.40  E-value=3.1  Score=28.00  Aligned_cols=94  Identities=11%  Similarity=-0.016  Sum_probs=49.7

Q ss_pred             ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEE-EEcchHHHHHHHhhcccCCCceeEEEEeCCC
Q 029803           28 VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINF-IESEALSVLDQLLKYSENEGSFDYAFVDADK  106 (187)
Q Consensus        28 ~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~  106 (187)
                      .|.+++............+|..+|-++...+..++.+...+.  ...+ ...+..+.+..+.     ...+|+|++|...
T Consensus         9 ~~~~~~~~~~~~M~~~~~~ILivdd~~~~~~~l~~~L~~~~~--~~~v~~~~~~~~al~~l~-----~~~~dlvilD~~l   81 (164)
T 3t8y_A            9 HHSSGLVPRGSHMTDRVIRVLVVDDSAFMRMVLKDIIDSQPD--MKVVGFAKDGLEAVEKAI-----ELKPDVITMDIEM   81 (164)
T ss_dssp             ---------------CCEEEEEECSCHHHHHHHHHHHHTSTT--EEEEEEESSHHHHHHHHH-----HHCCSEEEECSSC
T ss_pred             cccCCcccCccccccCccEEEEEcCCHHHHHHHHHHHhcCCC--eEEEEecCCHHHHHHHhc-----cCCCCEEEEeCCC
Confidence            455555555555443356899999999999988888876542  1222 4556666555543     2479999999643


Q ss_pred             c--ccHHHHHHHHhccCCCeEEEEe
Q 029803          107 D--NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus       107 ~--~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .  ...++++.+.+. .+--++++.
T Consensus        82 ~~~~g~~l~~~lr~~-~~~~ii~~s  105 (164)
T 3t8y_A           82 PNLNGIEALKLIMKK-APTRVIMVS  105 (164)
T ss_dssp             SSSCHHHHHHHHHHH-SCCEEEEEE
T ss_pred             CCCCHHHHHHHHHhc-CCceEEEEe
Confidence            3  334555555443 334455554

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=89.09  E-value=1.5  Score=33.84  Aligned_cols=95  Identities=13%  Similarity=0.030  Sum_probs=54.8

Q ss_pred             CEEEEEcccccHHHHHHHhhCCC-C-------CEEEEEeCCcc-----hHHHHHHHHHhc----C--CCCcEEEEEcchH
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPE-D-------GQITAIDVNRE-----TYEIGLPIIKKA----G--VDHKINFIESEAL   81 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~-~-------~~v~~iD~~~~-----~~~~a~~~~~~~----~--~~~~~~~~~~d~~   81 (187)
                      ++|.-||+|.  .+..++..+.. +       .+|+.+|.+++     ..+..++.....    +  +..++.. ..+..
T Consensus         9 mkI~iIG~G~--mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~   85 (354)
T 1x0v_A            9 KKVCIVGSGN--WGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA-VPDVV   85 (354)
T ss_dssp             EEEEEECCSH--HHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE-ESSHH
T ss_pred             CeEEEECCCH--HHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE-EcCHH
Confidence            5799999863  33333333211 3       57999999887     555444321000    0  1112332 23332


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +.   .       ...|+||+..........++.+.+.++++.+++.
T Consensus        86 ~~---~-------~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~  122 (354)
T 1x0v_A           86 QA---A-------EDADILIFVVPHQFIGKICDQLKGHLKANATGIS  122 (354)
T ss_dssp             HH---H-------TTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEE
T ss_pred             HH---H-------cCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence            22   1       4689999977666667788888888888876654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=89.00  E-value=1.9  Score=35.05  Aligned_cols=70  Identities=19%  Similarity=0.143  Sum_probs=50.0

Q ss_pred             CCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCc
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGS   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~   96 (187)
                      .++|+-+|+  |..+..+|+.+.. +..|+.+|.+++.++.+.+.+       .+..++||+.+  .+.+.     .-+.
T Consensus         3 ~M~iiI~G~--G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~A-----gi~~   68 (461)
T 4g65_A            3 AMKIIILGA--GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEA-----GAQD   68 (461)
T ss_dssp             CEEEEEECC--SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHH-----TTTT
T ss_pred             cCEEEEECC--CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhc-----CCCc
Confidence            467888666  7777888887743 567999999999887766553       26788999864  45443     2367


Q ss_pred             eeEEEEe
Q 029803           97 FDYAFVD  103 (187)
Q Consensus        97 ~D~i~~d  103 (187)
                      .|+++.-
T Consensus        69 ad~~ia~   75 (461)
T 4g65_A           69 ADMLVAV   75 (461)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEE
Confidence            8988764

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=88.92  E-value=2.2  Score=31.56  Aligned_cols=82  Identities=10%  Similarity=0.020  Sum_probs=52.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCC
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~   95 (187)
                      +++++|-.|++ |..+..+++.+ ..+.+|+.++.+++..+...+.+...+....+..+.+|..+  .+..+.+.   .+
T Consensus         9 ~~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~g   84 (267)
T 3t4x_A            9 KGKTALVTGST-AGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK---YP   84 (267)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHH---CC
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHh---cC
Confidence            46778877764 44444444443 23689999999988887777776655434567788888743  22333222   36


Q ss_pred             ceeEEEEeC
Q 029803           96 SFDYAFVDA  104 (187)
Q Consensus        96 ~~D~i~~d~  104 (187)
                      +.|.++..+
T Consensus        85 ~id~lv~nA   93 (267)
T 3t4x_A           85 KVDILINNL   93 (267)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            799988764

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=88.83  E-value=2.7  Score=32.78  Aligned_cols=89  Identities=11%  Similarity=0.113  Sum_probs=51.0

Q ss_pred             cCCCEEEEEccc-ccHHHHH-HHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEE
Q 029803           18 VNAKKTIEIGVF-TGYSLLL-TALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFI   76 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~-la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~   76 (187)
                      .+..+|+-+||| .|...+. ++.. . -++++.+|.+.                   ...+.+.+++...+-.-+++.+
T Consensus        34 L~~~~VlivG~GGlG~~ia~~La~~-G-vg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~  111 (346)
T 1y8q_A           34 LRASRVLLVGLKGLGAEIAKNLILA-G-VKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVD  111 (346)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHH-T-CSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEE
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHc-C-CCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEE
Confidence            356799999985 3332222 3222 2 46999998643                   2456677777775544456777


Q ss_pred             EcchHHHHHHHhhcccCCCceeEEEEeCCCcccHHHHH
Q 029803           77 ESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHE  114 (187)
Q Consensus        77 ~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~  114 (187)
                      ..+..+....+.      ..||+|+...+.......+.
T Consensus       112 ~~~~~~~~~~~~------~~~dvVv~~~d~~~~r~~ln  143 (346)
T 1y8q_A          112 TEDIEKKPESFF------TQFDAVCLTCCSRDVIVKVD  143 (346)
T ss_dssp             CSCGGGCCHHHH------TTCSEEEEESCCHHHHHHHH
T ss_pred             ecccCcchHHHh------cCCCEEEEcCCCHHHHHHHH
Confidence            666533222232      57999987654433333333

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=88.80  E-value=5.4  Score=29.06  Aligned_cols=83  Identities=11%  Similarity=0.079  Sum_probs=51.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcc-cC
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYS-EN   93 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~-~~   93 (187)
                      +.++||-.| |+|..+..+++.+.  .+.+|+.++.+++..+...+.+...+  .++.++.+|..+  .+..+.+.- ..
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            456777666 45666666666552  26799999998877776666665543  357888888643  122211100 00


Q ss_pred             CCceeEEEEeC
Q 029803           94 EGSFDYAFVDA  104 (187)
Q Consensus        94 ~~~~D~i~~d~  104 (187)
                      .+++|.++..+
T Consensus        80 ~g~id~li~~A   90 (276)
T 1wma_A           80 YGGLDVLVNNA   90 (276)
T ss_dssp             HSSEEEEEECC
T ss_pred             cCCCCEEEECC
Confidence            24799988764

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=88.77  E-value=0.89  Score=34.91  Aligned_cols=96  Identities=6%  Similarity=-0.053  Sum_probs=54.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEE-----EEcchHHHHHHHhhcc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINF-----IESEALSVLDQLLKYS   91 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~-----~~~d~~~~~~~~~~~~   91 (187)
                      ....+|.-||+|  .++..++..+. .+..|+.+ .+++.++..++.-...... ...+     ...+..    .     
T Consensus        17 ~~~~kI~IiGaG--a~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~-~~~~~~~~~~~~~~~----~-----   83 (318)
T 3hwr_A           17 FQGMKVAIMGAG--AVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQ-SFDEQVKVSASSDPS----A-----   83 (318)
T ss_dssp             ---CEEEEESCS--HHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECS-SCEEEECCEEESCGG----G-----
T ss_pred             ccCCcEEEECcC--HHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcC-CCcEEEeeeeeCCHH----H-----
Confidence            356789999885  33333333331 14588888 8877776665431000000 0111     111221    1     


Q ss_pred             cCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                        -..+|+|++..........++.+.+.++++.+++.
T Consensus        84 --~~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~  118 (318)
T 3hwr_A           84 --VQGADLVLFCVKSTDTQSAALAMKPALAKSALVLS  118 (318)
T ss_dssp             --GTTCSEEEECCCGGGHHHHHHHHTTTSCTTCEEEE
T ss_pred             --cCCCCEEEEEcccccHHHHHHHHHHhcCCCCEEEE
Confidence              15789999977666777888888889999887664

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=88.74  E-value=1.8  Score=32.68  Aligned_cols=34  Identities=9%  Similarity=0.099  Sum_probs=26.5

Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..+|+||+..........++.+.+.++++..++.
T Consensus        82 ~~~D~vil~vk~~~~~~v~~~i~~~l~~~~~iv~  115 (317)
T 2qyt_A           82 GTVDYILFCTKDYDMERGVAEIRPMIGQNTKILP  115 (317)
T ss_dssp             CCEEEEEECCSSSCHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCCCEEEEecCcccHHHHHHHHHhhcCCCCEEEE
Confidence            5799999987666677788888888888776654

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=88.47  E-value=5.9  Score=29.11  Aligned_cols=80  Identities=9%  Similarity=0.100  Sum_probs=52.3

Q ss_pred             cCCCEEEEEcc----cccH-HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHH
Q 029803           18 VNAKKTIEIGV----FTGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQ   86 (187)
Q Consensus        18 ~~~~~vLeiG~----g~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~   86 (187)
                      .+++++|--|+    |.|. .+..|++   .+.+|+.++.+++..+.+.+.++..+- .++.++.+|..+      .+..
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~---~Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~   79 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQ---LGAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQ   79 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHH---TTCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHH
Confidence            36788999884    3443 3334444   278999999999988888888776553 357788888632      1222


Q ss_pred             HhhcccCCCceeEEEEeC
Q 029803           87 LLKYSENEGSFDYAFVDA  104 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~  104 (187)
                      ....   .++.|.++...
T Consensus        80 ~~~~---~G~iD~lvnnA   94 (256)
T 4fs3_A           80 IGKD---VGNIDGVYHSI   94 (256)
T ss_dssp             HHHH---HCCCSEEEECC
T ss_pred             HHHH---hCCCCEEEecc
Confidence            2111   36899888653

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=88.31  E-value=6.2  Score=29.16  Aligned_cols=85  Identities=11%  Similarity=0.038  Sum_probs=52.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cCC
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE   94 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~   94 (187)
                      +.+++|-.|+ +|..+..+++.+ ..+.+|+.++.+++.++...+.+...+...++.++.+|..+.  +..+.+.- ...
T Consensus        31 ~~k~vlVTGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           31 RDRLALVTGA-SGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TTCEEEEEST-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            5677888775 455555555444 236799999998887777766666666555688888886432  22211100 002


Q ss_pred             CceeEEEEeC
Q 029803           95 GSFDYAFVDA  104 (187)
Q Consensus        95 ~~~D~i~~d~  104 (187)
                      +++|.++..+
T Consensus       110 g~iD~vi~~A  119 (279)
T 1xg5_A          110 SGVDICINNA  119 (279)
T ss_dssp             CCCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            4789888764

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=88.19  E-value=4.6  Score=32.11  Aligned_cols=89  Identities=19%  Similarity=0.053  Sum_probs=52.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCC----CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCC
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPED----GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE   94 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~~----~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~   94 (187)
                      ++|+-+|+  |+.+..++..+...    .+|+.+|.+++..+...+.+...+ ..++..+..|+.+  .+..+.+.    
T Consensus         2 ~kVlIiGa--GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~----   74 (405)
T 4ina_A            2 AKVLQIGA--GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINE----   74 (405)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHH----
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHh----
Confidence            47888988  45666666544222    389999999887776666655432 1347777777632  33443211    


Q ss_pred             CceeEEEEeCCCcccHHHHHHH
Q 029803           95 GSFDYAFVDADKDNYCNYHERL  116 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~  116 (187)
                      ...|+|+............+.+
T Consensus        75 ~~~DvVin~ag~~~~~~v~~a~   96 (405)
T 4ina_A           75 VKPQIVLNIALPYQDLTIMEAC   96 (405)
T ss_dssp             HCCSEEEECSCGGGHHHHHHHH
T ss_pred             hCCCEEEECCCcccChHHHHHH
Confidence            2489888765443333344444

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=88.14  E-value=5.1  Score=29.72  Aligned_cols=81  Identities=12%  Similarity=0.143  Sum_probs=53.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   90 (187)
                      .+++.+|--|.+.|- +..++..+ ..+++|+.+|.+++.++.+.+.++..+  .++..+.+|..+      .+....+.
T Consensus         5 L~gKvalVTGas~GI-G~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~   81 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGI-GRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFET   81 (254)
T ss_dssp             GTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            467888888876663 33333332 237899999999999988888887765  358888888642      12221111


Q ss_pred             ccCCCceeEEEEeC
Q 029803           91 SENEGSFDYAFVDA  104 (187)
Q Consensus        91 ~~~~~~~D~i~~d~  104 (187)
                         -++.|.++..+
T Consensus        82 ---~G~iDiLVNNA   92 (254)
T 4fn4_A           82 ---YSRIDVLCNNA   92 (254)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---cCCCCEEEECC
Confidence               36899888664

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=88.03  E-value=7.2  Score=30.37  Aligned_cols=59  Identities=14%  Similarity=0.058  Sum_probs=35.8

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEEEc
Q 029803           19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES   78 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~   78 (187)
                      +..+|+-+|+| .|...+..+.... -++++.+|.+.                   ...+.+++.+...+-.-+++.+..
T Consensus        33 ~~~~VlIvGaGGlGs~va~~La~aG-Vg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~  111 (340)
T 3rui_A           33 KNTKVLLLGAGTLGCYVSRALIAWG-VRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKL  111 (340)
T ss_dssp             HTCEEEEECCSHHHHHHHHHHHHTT-CCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             hCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEec
Confidence            56789999997 3433333333323 57999998754                   345667777776553334555553

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=88.00  E-value=1.3  Score=35.80  Aligned_cols=107  Identities=16%  Similarity=0.207  Sum_probs=56.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc-----c
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS-----E   92 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----~   92 (187)
                      .+.+.--||+  |+.+..+|..+.. +.+|+++|++++.++..++..     .   .+..-...+.+......+     .
T Consensus        10 ~~~~~~ViGl--GyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~-----~---pi~epgl~~ll~~~~~~g~l~~tt   79 (431)
T 3ojo_A           10 HGSKLTVVGL--GYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQ-----I---SIEEPGLQEVYEEVLSSGKLKVST   79 (431)
T ss_dssp             --CEEEEECC--STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTC-----C---SSCCTTHHHHHHHHHHTTCEEEES
T ss_pred             cCCccEEEee--CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCC-----C---CcCCCCHHHHHHhhcccCceEEeC
Confidence            3455666666  5555555544422 568999999998877665420     0   011112222221100000     0


Q ss_pred             CCCceeEEEEeCC-Cc-----------ccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           93 NEGSFDYAFVDAD-KD-----------NYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        93 ~~~~~D~i~~d~~-~~-----------~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      .....|+||+... +.           ......+.+.+.|++|.+++...+...|
T Consensus        80 d~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pg  134 (431)
T 3ojo_A           80 TPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPK  134 (431)
T ss_dssp             SCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTT
T ss_pred             chhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChh
Confidence            0135788887632 21           1344556777899999888876555444

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=87.95  E-value=6.7  Score=29.12  Aligned_cols=81  Identities=11%  Similarity=0.120  Sum_probs=53.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   90 (187)
                      .+++.+|--|.+.| .+..++..+ ..+++|+.+|.+++.++.+.+.+...+  .++..+.+|..+      .+..... 
T Consensus         7 L~gKvalVTGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~-   82 (255)
T 4g81_D            7 LTGKTALVTGSARG-LGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDA-   82 (255)
T ss_dssp             CTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHH-
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH-
Confidence            36788888776655 333334333 237899999999998888887777665  357788888632      2222222 


Q ss_pred             ccCCCceeEEEEeC
Q 029803           91 SENEGSFDYAFVDA  104 (187)
Q Consensus        91 ~~~~~~~D~i~~d~  104 (187)
                        ..++.|.++..+
T Consensus        83 --~~G~iDiLVNNA   94 (255)
T 4g81_D           83 --EGIHVDILINNA   94 (255)
T ss_dssp             --TTCCCCEEEECC
T ss_pred             --HCCCCcEEEECC
Confidence              247899888764

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=87.91  E-value=9.8  Score=30.97  Aligned_cols=100  Identities=16%  Similarity=0.137  Sum_probs=55.3

Q ss_pred             CEEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCcchHHHHHHH------------HHhcCCCCcEEEEEcchHHHHHH
Q 029803           21 KKTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPI------------IKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus        21 ~~vLeiG~g~-G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~------------~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      .+|.-||+|. |. .+..+++..+ +.+|+++|.+++.++..++.            +... ...++.+ ..|..+.+  
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~-g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~-~~~~l~~-t~~~~~~~--   84 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCP-HITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAA-RGRNLFF-SSDIPKAI--   84 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCT-TSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHH-BTTTEEE-ESCHHHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCC-CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHh-hcCCEEE-ECCHHHHh--
Confidence            5788998863 22 2333444321 46899999998877655431            0000 0112222 22332322  


Q ss_pred             HhhcccCCCceeEEEEeCC-Cc--------------ccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           87 LLKYSENEGSFDYAFVDAD-KD--------------NYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~-~~--------------~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                              ...|+||+... +.              .....++.+.+.+++|.+++...+..
T Consensus        85 --------~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~  138 (481)
T 2o3j_A           85 --------AEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVP  138 (481)
T ss_dssp             --------HHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCC
T ss_pred             --------hcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence                    34799988642 21              14556777778899988777644443

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=87.79  E-value=4.4  Score=30.74  Aligned_cols=38  Identities=21%  Similarity=0.132  Sum_probs=23.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCC-CCC--EEEEEeCCcchHH
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIP-EDG--QITAIDVNRETYE   58 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~-~~~--~v~~iD~~~~~~~   58 (187)
                      ++.+|.-||+|.  .+..++..+. .+.  .|+.+|.+++.++
T Consensus         6 ~~mkI~IiGaG~--vG~~~a~~l~~~g~~~~V~l~d~~~~~~~   46 (319)
T 1lld_A            6 KPTKLAVIGAGA--VGSTLAFAAAQRGIAREIVLEDIAKERVE   46 (319)
T ss_dssp             -CCEEEEECCSH--HHHHHHHHHHHTTCCSEEEEECSSHHHHH
T ss_pred             CCCEEEEECCCH--HHHHHHHHHHhCCCCCEEEEEeCChhHHH
Confidence            456899999854  3333332221 133  8999999886654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=87.60  E-value=4.4  Score=30.57  Aligned_cols=89  Identities=7%  Similarity=0.018  Sum_probs=50.2

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++++|+-||+|. |......+..+  +.+|+.+|.+++..+.+.    ..+    .+....+.   +.++      -..
T Consensus       153 l~g~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~----~~g----~~~~~~~~---l~~~------l~~  213 (293)
T 3d4o_A          153 IHGANVAVLGLGRVGMSVARKFAAL--GAKVKVGARESDLLARIA----EMG----MEPFHISK---AAQE------LRD  213 (293)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTT----SEEEEGGG---HHHH------TTT
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHH----HCC----CeecChhh---HHHH------hcC
Confidence            4678999999752 33333333433  469999999876544332    223    22222111   2222      257


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|+|+.........   +...+.++++++++-
T Consensus       214 aDvVi~~~p~~~i~---~~~l~~mk~~~~lin  242 (293)
T 3d4o_A          214 VDVCINTIPALVVT---ANVLAEMPSHTFVID  242 (293)
T ss_dssp             CSEEEECCSSCCBC---HHHHHHSCTTCEEEE
T ss_pred             CCEEEECCChHHhC---HHHHHhcCCCCEEEE
Confidence            89999865432221   234567899887763

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=87.56  E-value=6.3  Score=32.26  Aligned_cols=95  Identities=14%  Similarity=0.067  Sum_probs=57.0

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           21 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      .+|--||+  |..+..++..+. .+.+|++.|.+++..+...+.-   ....++. ...+..+....+       ...|+
T Consensus         5 ~kIgiIGl--G~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g---~~g~~i~-~~~s~~e~v~~l-------~~aDv   71 (484)
T 4gwg_A            5 ADIALIGL--AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANE---AKGTKVV-GAQSLKEMVSKL-------KKPRR   71 (484)
T ss_dssp             BSEEEECC--SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTT---TTTSSCE-ECSSHHHHHHTB-------CSSCE
T ss_pred             CEEEEECh--hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcc---cCCCcee-ccCCHHHHHhhc-------cCCCE
Confidence            46777776  555555554432 1568999999998766554321   0111121 123444444332       46799


Q ss_pred             EEEeCCCc-ccHHHHHHHHhccCCCeEEEE
Q 029803          100 AFVDADKD-NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus       100 i~~d~~~~-~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |++..... .....++.+.+.|++|.+++-
T Consensus        72 Vil~Vp~~~~v~~vl~~l~~~L~~g~iIId  101 (484)
T 4gwg_A           72 IILLVKAGQAVDDFIEKLVPLLDTGDIIID  101 (484)
T ss_dssp             EEECSCSSHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             EEEecCChHHHHHHHHHHHHhcCCCCEEEE
Confidence            99876543 556778888899999877654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=87.52  E-value=3.4  Score=33.51  Aligned_cols=85  Identities=16%  Similarity=0.090  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHH-cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--H
Q 029803            7 HGQLMAMLLRL-VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--V   83 (187)
Q Consensus         7 ~~~ll~~l~~~-~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~   83 (187)
                      ..+++..+-.. .+.++|+=+|.  |..+..+|+.+....++..+|.+++..+...+.+      ++..+++||+.+  .
T Consensus       221 i~~~~~~~g~~~~~~~~v~I~Gg--G~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l------~~~~Vi~GD~td~~~  292 (461)
T 4g65_A          221 IRSVMSELQRLEKPYRRIMIVGG--GNIGASLAKRLEQTYSVKLIERNLQRAEKLSEEL------ENTIVFCGDAADQEL  292 (461)
T ss_dssp             HHHHHHHTTGGGSCCCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHC------TTSEEEESCTTCHHH
T ss_pred             HHHHHHhhccccccccEEEEEcc--hHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHC------CCceEEeccccchhh
Confidence            34455544332 34578888775  6777788888877789999999998777766554      257899999976  3


Q ss_pred             HHHHhhcccCCCceeEEEEeC
Q 029803           84 LDQLLKYSENEGSFDYAFVDA  104 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~  104 (187)
                      +.+-     .-+..|+++.-.
T Consensus       293 L~ee-----~i~~~D~~ia~T  308 (461)
T 4g65_A          293 LTEE-----NIDQVDVFIALT  308 (461)
T ss_dssp             HHHT-----TGGGCSEEEECC
T ss_pred             Hhhc-----CchhhcEEEEcc
Confidence            4431     235789887753

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=87.11  E-value=6.6  Score=29.35  Aligned_cols=96  Identities=13%  Similarity=0.058  Sum_probs=57.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhc---------CCC--------CcEEEEEcchH
Q 029803           20 AKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKA---------GVD--------HKINFIESEAL   81 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~---------~~~--------~~~~~~~~d~~   81 (187)
                      .++|.-||+|.  .+..+|..+ ..+.+|+.+|.+++.++.+++.+...         +..        .+++. ..+..
T Consensus         4 ~~kV~VIGaG~--mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~   80 (283)
T 4e12_A            4 ITNVTVLGTGV--LGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLA   80 (283)
T ss_dssp             CCEEEEECCSH--HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHH
T ss_pred             CCEEEEECCCH--HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHH
Confidence            46788888863  333333322 12579999999999888887664321         111        01222 22322


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCCc--ccHHHHHHHHhccCCCeEEEE
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +.          -...|+|+......  .....++++.+.++++.+++-
T Consensus        81 ~~----------~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s  119 (283)
T 4e12_A           81 QA----------VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFAT  119 (283)
T ss_dssp             HH----------TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             HH----------hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEE
Confidence            21          15689999865433  445677888888998877653

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=86.96  E-value=7  Score=28.69  Aligned_cols=81  Identities=15%  Similarity=0.097  Sum_probs=52.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH------HHHHhhc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~   90 (187)
                      .+++++|-.|++.| .+..++..+ ..+.+|+.++.+++.++...+.+...+  .++.++.+|..+.      +....+.
T Consensus         9 l~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A            9 LTDKVVVISGVGPA-LGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKA   85 (264)
T ss_dssp             TTTCEEEEESCCTT-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCcH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46788998887655 333333333 236899999999988887777776654  4688888886431      2222211


Q ss_pred             ccCCCceeEEEEeC
Q 029803           91 SENEGSFDYAFVDA  104 (187)
Q Consensus        91 ~~~~~~~D~i~~d~  104 (187)
                         .++.|.++..+
T Consensus        86 ---~g~id~lv~nA   96 (264)
T 3ucx_A           86 ---YGRVDVVINNA   96 (264)
T ss_dssp             ---TSCCSEEEECC
T ss_pred             ---cCCCcEEEECC
Confidence               35799988764

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=86.95  E-value=8.1  Score=28.98  Aligned_cols=81  Identities=14%  Similarity=0.118  Sum_probs=47.4

Q ss_pred             cCCCEEEEEccccc-HHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhh
Q 029803           18 VNAKKTIEIGVFTG-YSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLK   89 (187)
Q Consensus        18 ~~~~~vLeiG~g~G-~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~   89 (187)
                      .+++++|-.|++.| ..+..+++.+ ..+.+|+.++.++...+.+++.....+   ++.++.+|..+      .+.....
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHH
Confidence            46788999986532 1223333222 126799999988765555555544433   47788888643      1222221


Q ss_pred             cccCCCceeEEEEeC
Q 029803           90 YSENEGSFDYAFVDA  104 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~  104 (187)
                      .   .+++|.++..+
T Consensus       106 ~---~g~iD~lVnnA  117 (293)
T 3grk_A          106 K---WGKLDFLVHAI  117 (293)
T ss_dssp             H---TSCCSEEEECC
T ss_pred             h---cCCCCEEEECC
Confidence            1   35799998765

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=86.93  E-value=3.5  Score=31.64  Aligned_cols=97  Identities=16%  Similarity=0.135  Sum_probs=46.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHHHHHHHHh-cCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ++.+|.-||+|  +.+..++..+   +...+++.+|++++.++-....+.. ..+...+++..++.    ..+       
T Consensus         6 ~~~KI~IiGaG--~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~----~a~-------   72 (318)
T 1y6j_A            6 SRSKVAIIGAG--FVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDY----SDV-------   72 (318)
T ss_dssp             -CCCEEEECCS--HHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CG----GGG-------
T ss_pred             CCCEEEEECCC--HHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCH----HHh-------
Confidence            45789999985  3333222222   1124899999998655421222221 11222344443331    122       


Q ss_pred             CceeEEEEeCCCcc----------------cHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADKDN----------------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~~----------------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...|+|++....+.                ..+..+.+.+. .|+++++..
T Consensus        73 ~~aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~  122 (318)
T 1y6j_A           73 KDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVV  122 (318)
T ss_dssp             TTCSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEEC
T ss_pred             CCCCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEe
Confidence            57899998653211                12233333333 689988873

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=86.73  E-value=8.1  Score=28.80  Aligned_cols=87  Identities=16%  Similarity=0.039  Sum_probs=52.9

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           21 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      ++|.-||+  |..+..++..+. .+.+|+.+|.+++..+...+.    +    +. ...+..+.+          ...|+
T Consensus         2 ~~i~iIG~--G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~----g----~~-~~~~~~~~~----------~~aDv   60 (287)
T 3pef_A            2 QKFGFIGL--GIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAAL----G----AE-RAATPCEVV----------ESCPV   60 (287)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHT----T----CE-ECSSHHHHH----------HHCSE
T ss_pred             CEEEEEee--cHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC----C----Ce-ecCCHHHHH----------hcCCE
Confidence            46778887  555555544432 256899999999887765542    2    22 223433332          24699


Q ss_pred             EEEeCC-CcccHHHH---HHHHhccCCCeEEEE
Q 029803          100 AFVDAD-KDNYCNYH---ERLMKLLKVGGIAVY  128 (187)
Q Consensus       100 i~~d~~-~~~~~~~~---~~~~~~L~~gG~lv~  128 (187)
                      |++... .......+   +.+.+.+++|.+++-
T Consensus        61 vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~   93 (287)
T 3pef_A           61 TFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVD   93 (287)
T ss_dssp             EEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEE
T ss_pred             EEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEe
Confidence            998654 23445555   666678888876654

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=86.66  E-value=2  Score=30.55  Aligned_cols=93  Identities=16%  Similarity=0.129  Sum_probs=53.9

Q ss_pred             CEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcc-hHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCC
Q 029803           21 KKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRE-TYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEG   95 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~-~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~   95 (187)
                      ++||-.|+ +|..+..+++.+.  .+.+|++++.+++ .++...    ..  ..+++++.+|..+  .+....      .
T Consensus         6 k~vlVtGa-sg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~~--~~~~~~~~~D~~d~~~~~~~~------~   72 (221)
T 3r6d_A            6 XYITILGA-AGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----ID--HERVTVIEGSFQNPGXLEQAV------T   72 (221)
T ss_dssp             SEEEEEST-TSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----HT--STTEEEEECCTTCHHHHHHHH------T
T ss_pred             EEEEEEeC-CcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----cC--CCceEEEECCCCCHHHHHHHH------c
Confidence            45787774 4555555554442  3679999998876 433221    11  2468899999864  333332      5


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCC--eEEEE
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVG--GIAVY  128 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~g--G~lv~  128 (187)
                      .+|.++......+..  .+.+.+.++..  |.+|.
T Consensus        73 ~~d~vv~~ag~~n~~--~~~~~~~~~~~~~~~iv~  105 (221)
T 3r6d_A           73 NAEVVFVGAMESGSD--MASIVKALSRXNIRRVIG  105 (221)
T ss_dssp             TCSEEEESCCCCHHH--HHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEcCCCCChh--HHHHHHHHHhcCCCeEEE
Confidence            689999876543333  45555544433  34543

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=86.56  E-value=7.6  Score=28.32  Aligned_cols=83  Identities=16%  Similarity=0.045  Sum_probs=53.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-EN   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~   93 (187)
                      .+++++|-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+...+  .++.++.+|..+.  +..+.+.- ..
T Consensus         5 ~~~k~vlVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (252)
T 3h7a_A            5 PRNATVAVIGAGDY-IGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH   81 (252)
T ss_dssp             CCSCEEEEECCSSH-HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence            35678888887654 444444433 236799999999998888888777654  4688899887432  22221110 01


Q ss_pred             CCceeEEEEeC
Q 029803           94 EGSFDYAFVDA  104 (187)
Q Consensus        94 ~~~~D~i~~d~  104 (187)
                       +++|.++..+
T Consensus        82 -g~id~lv~nA   91 (252)
T 3h7a_A           82 -APLEVTIFNV   91 (252)
T ss_dssp             -SCEEEEEECC
T ss_pred             -CCceEEEECC
Confidence             5799888764

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=86.45  E-value=2.2  Score=32.71  Aligned_cols=89  Identities=13%  Similarity=0.022  Sum_probs=53.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCC-C----CEEEEEeCCcc--hHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPE-D----GQITAIDVNRE--TYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS   91 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~-~----~~v~~iD~~~~--~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   91 (187)
                      ...+|.-||+|  ..+..++..+.. +    ..|+.+|.+++  .++..+    ..+    +.+ ..+..+..       
T Consensus        21 ~~mkI~iIG~G--~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~----~~G----~~~-~~~~~e~~-------   82 (322)
T 2izz_A           21 QSMSVGFIGAG--QLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR----KMG----VKL-TPHNKETV-------   82 (322)
T ss_dssp             -CCCEEEESCS--HHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH----HHT----CEE-ESCHHHHH-------
T ss_pred             CCCEEEEECCC--HHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH----HcC----CEE-eCChHHHh-------
Confidence            34578889985  444444433311 2    47999998875  444443    223    222 23433322       


Q ss_pred             cCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                         ...|+||+...+......++.+.+.++++.+++.
T Consensus        83 ---~~aDvVilav~~~~~~~vl~~l~~~l~~~~ivvs  116 (322)
T 2izz_A           83 ---QHSDVLFLAVKPHIIPFILDEIGADIEDRHIVVS  116 (322)
T ss_dssp             ---HHCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             ---ccCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEE
Confidence               3579999987666677778888788888776554

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=86.15  E-value=8.3  Score=32.58  Aligned_cols=60  Identities=13%  Similarity=0.074  Sum_probs=37.3

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEEE
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIE   77 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~   77 (187)
                      .+..+|+-+||| .|...+..+.... -++++.+|.+.                   ...+.+++.+...+-.-+++.+.
T Consensus       324 L~~arVLIVGaGGLGs~vA~~La~aG-VG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~~  402 (615)
T 4gsl_A          324 IKNTKVLLLGAGTLGCYVSRALIAWG-VRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVK  402 (615)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHTT-CCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEEC
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEee
Confidence            356789999997 3443333333333 57999999765                   34566777777655444455555


Q ss_pred             c
Q 029803           78 S   78 (187)
Q Consensus        78 ~   78 (187)
                      .
T Consensus       403 ~  403 (615)
T 4gsl_A          403 L  403 (615)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=86.08  E-value=5.4  Score=29.76  Aligned_cols=89  Identities=17%  Similarity=0.097  Sum_probs=51.7

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC---CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIP---EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~---~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++|.-||+|.  .+..++..+.   .+.+|+++|.+++..+.+++    .+...   ....+..+.          -..
T Consensus         6 ~~~I~iIG~G~--mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~----~g~~~---~~~~~~~~~----------~~~   66 (290)
T 3b1f_A            6 EKTIYIAGLGL--IGASLALGIKRDHPHYKIVGYNRSDRSRDIALE----RGIVD---EATADFKVF----------AAL   66 (290)
T ss_dssp             CCEEEEECCSH--HHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH----TTSCS---EEESCTTTT----------GGG
T ss_pred             cceEEEEeeCH--HHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH----cCCcc---cccCCHHHh----------hcC
Confidence            46788899753  3333333221   14689999999877665443    23211   112222111          135


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhc-cCCCeEEE
Q 029803           97 FDYAFVDADKDNYCNYHERLMKL-LKVGGIAV  127 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~-L~~gG~lv  127 (187)
                      .|+|++..........++.+.+. ++++.+++
T Consensus        67 aDvVilavp~~~~~~v~~~l~~~~l~~~~ivi   98 (290)
T 3b1f_A           67 ADVIILAVPIKKTIDFIKILADLDLKEDVIIT   98 (290)
T ss_dssp             CSEEEECSCHHHHHHHHHHHHTSCCCTTCEEE
T ss_pred             CCEEEEcCCHHHHHHHHHHHHhcCCCCCCEEE
Confidence            79999876555556677777777 88776555

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=86.01  E-value=5.7  Score=29.10  Aligned_cols=80  Identities=15%  Similarity=0.165  Sum_probs=51.1

Q ss_pred             cCCCEEEEEcc-ccc--H-HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH------HHHH
Q 029803           18 VNAKKTIEIGV-FTG--Y-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQL   87 (187)
Q Consensus        18 ~~~~~vLeiG~-g~G--~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~   87 (187)
                      .+++++|-.|+ |.|  . .+..+++   .+.+|+.++.+++..+...+.+...+ ..++.++.+|..+.      +...
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~---~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~   95 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALL---EGADVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQT   95 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHH---CCCEEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHH
Confidence            35678888886 443  2 2233333   36899999999988887777776544 24689999887431      2222


Q ss_pred             hhcccCCCceeEEEEeC
Q 029803           88 LKYSENEGSFDYAFVDA  104 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~  104 (187)
                      .+.   .+++|.++..+
T Consensus        96 ~~~---~g~id~li~~A  109 (266)
T 3o38_A           96 VEK---AGRLDVLVNNA  109 (266)
T ss_dssp             HHH---HSCCCEEEECC
T ss_pred             HHH---hCCCcEEEECC
Confidence            111   25789998764

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=85.99  E-value=5.5  Score=29.57  Aligned_cols=85  Identities=14%  Similarity=-0.106  Sum_probs=49.4

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803           22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  101 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  101 (187)
                      +|.-||+|.  .+..++..+..+.+|+.+|.+++..+...+.    +..    ...  ..+    .      -...|+|+
T Consensus         3 ~i~iiG~G~--~G~~~a~~l~~g~~V~~~~~~~~~~~~~~~~----g~~----~~~--~~~----~------~~~~D~vi   60 (289)
T 2cvz_A            3 KVAFIGLGA--MGYPMAGHLARRFPTLVWNRTFEKALRHQEE----FGS----EAV--PLE----R------VAEARVIF   60 (289)
T ss_dssp             CEEEECCST--THHHHHHHHHTTSCEEEECSSTHHHHHHHHH----HCC----EEC--CGG----G------GGGCSEEE
T ss_pred             eEEEEcccH--HHHHHHHHHhCCCeEEEEeCCHHHHHHHHHC----CCc----ccC--HHH----H------HhCCCEEE
Confidence            577788763  3333333221145799999998876655443    221    111  111    1      14689999


Q ss_pred             EeCCCc-ccHHHHHHHHhccCCCeEEEE
Q 029803          102 VDADKD-NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus       102 ~d~~~~-~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +..... .....++.+.+.+++|.+++.
T Consensus        61 ~~v~~~~~~~~v~~~l~~~l~~~~~vv~   88 (289)
T 2cvz_A           61 TCLPTTREVYEVAEALYPYLREGTYWVD   88 (289)
T ss_dssp             ECCSSHHHHHHHHHHHTTTCCTTEEEEE
T ss_pred             EeCCChHHHHHHHHHHHhhCCCCCEEEE
Confidence            876444 355567777788888876664

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=85.85  E-value=8.4  Score=28.11  Aligned_cols=82  Identities=11%  Similarity=0.045  Sum_probs=49.7

Q ss_pred             HcCCCEEEEEccc-ccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHh
Q 029803           17 LVNAKKTIEIGVF-TGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLL   88 (187)
Q Consensus        17 ~~~~~~vLeiG~g-~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~   88 (187)
                      ..++++||-.|++ +|..+..+++.+ ..+.+|+.++.++...+.+++.....+   .+.++.+|..+      .+..+.
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~   87 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLK   87 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHH
Confidence            3467889998864 244444444433 236799999988766666665555443   36778888643      222222


Q ss_pred             hcccCCCceeEEEEeC
Q 029803           89 KYSENEGSFDYAFVDA  104 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~  104 (187)
                      ..   .+++|.++..+
T Consensus        88 ~~---~g~id~lv~nA  100 (271)
T 3ek2_A           88 TH---WDSLDGLVHSI  100 (271)
T ss_dssp             HH---CSCEEEEEECC
T ss_pred             HH---cCCCCEEEECC
Confidence            11   35899998764

>3trk_A Nonstructural polyprotein; hydrolase; 2.40A {Chikungunya virus}

Probab=85.66  E-value=1.2  Score=33.55  Aligned_cols=38  Identities=21%  Similarity=0.362  Sum_probs=25.7

Q ss_pred             CceeEEEEeCC----CcccHHH----------HHHHHhccCCCeEEEEeCCC
Q 029803           95 GSFDYAFVDAD----KDNYCNY----------HERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        95 ~~~D~i~~d~~----~~~~~~~----------~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ++||+||++..    ..+|+.-          -..+..+|+|||.+++...-
T Consensus       210 grYDlVfvNv~TpyR~HHYQQCeDHA~~l~mL~~~al~~L~pGGtlv~~aYG  261 (324)
T 3trk_A          210 GRYDLVVINIHTPFRIHHYQQCVDHAMKLQMLGGDSLRLLKPGGSLLIRAYG  261 (324)
T ss_dssp             CCEEEEEEECCCCCCSSHHHHHHHHHHHHHHHHHHGGGGEEEEEEEEEEECC
T ss_pred             CceeEEEEecCCccccchHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEeec
Confidence            79999999953    2234332          22335899999999986444

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=85.61  E-value=8.2  Score=27.81  Aligned_cols=80  Identities=13%  Similarity=0.068  Sum_probs=52.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhcc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS   91 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~   91 (187)
                      +++++|-.|++ |..+..+++.+ ..+.+|+.++.+++..+...+.+...+  .++.++.+|..+      .+.....  
T Consensus         4 ~~k~vlITGas-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~--   78 (247)
T 3lyl_A            4 NEKVALVTGAS-RGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKA--   78 (247)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH--
T ss_pred             CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHH--
Confidence            46778877754 44444444443 236799999999988887777776654  358888888743      2222221  


Q ss_pred             cCCCceeEEEEeC
Q 029803           92 ENEGSFDYAFVDA  104 (187)
Q Consensus        92 ~~~~~~D~i~~d~  104 (187)
                       ..+++|.++..+
T Consensus        79 -~~~~id~li~~A   90 (247)
T 3lyl_A           79 -ENLAIDILVNNA   90 (247)
T ss_dssp             -TTCCCSEEEECC
T ss_pred             -HcCCCCEEEECC
Confidence             145789988764

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=85.59  E-value=8.8  Score=28.11  Aligned_cols=87  Identities=17%  Similarity=0.126  Sum_probs=49.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-EN   93 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~   93 (187)
                      .+++++|-.|+. |..+..+++.+ ..+.+|+.++.+++..+...+.+.......++.++.+|..+.  +..+.+.- ..
T Consensus         5 ~~~k~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (267)
T 2gdz_A            5 VNGKVALVTGAA-QGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH   83 (267)
T ss_dssp             CTTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCC-CcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence            356788888864 44455555444 236799999998876655554443221123588888886432  22211000 00


Q ss_pred             CCceeEEEEeCC
Q 029803           94 EGSFDYAFVDAD  105 (187)
Q Consensus        94 ~~~~D~i~~d~~  105 (187)
                      .+++|.++..+.
T Consensus        84 ~g~id~lv~~Ag   95 (267)
T 2gdz_A           84 FGRLDILVNNAG   95 (267)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            257899887653

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=85.58  E-value=5.8  Score=29.48  Aligned_cols=82  Identities=15%  Similarity=0.168  Sum_probs=50.3

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH------HHHHhh
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLK   89 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~   89 (187)
                      +.+++++|-.|++.| .+..+++.+ ..+.+|+.++.+++.++...+.+...+  .++.++.+|..+.      +.....
T Consensus        21 m~~~k~~lVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~   97 (279)
T 3sju_A           21 MSRPQTAFVTGVSSG-IGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVE   97 (279)
T ss_dssp             ----CEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            446778888886544 444444433 236899999999888877777776544  4588888887431      222211


Q ss_pred             cccCCCceeEEEEeC
Q 029803           90 YSENEGSFDYAFVDA  104 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~  104 (187)
                      .   .++.|.++..+
T Consensus        98 ~---~g~id~lv~nA  109 (279)
T 3sju_A           98 R---FGPIGILVNSA  109 (279)
T ss_dssp             H---HCSCCEEEECC
T ss_pred             H---cCCCcEEEECC
Confidence            1   25789988764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=85.55  E-value=7.7  Score=29.28  Aligned_cols=89  Identities=7%  Similarity=0.076  Sum_probs=50.7

Q ss_pred             cCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++++|+-||+|. |......+...  +.+|+.+|.+++..+.+.    ..+    .+.+..+.   +.++      -..
T Consensus       155 l~g~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~d~~~~~~~~~~----~~g----~~~~~~~~---l~~~------l~~  215 (300)
T 2rir_A          155 IHGSQVAVLGLGRTGMTIARTFAAL--GANVKVGARSSAHLARIT----EMG----LVPFHTDE---LKEH------VKD  215 (300)
T ss_dssp             STTSEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH----HTT----CEEEEGGG---HHHH------STT
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH----HCC----CeEEchhh---HHHH------hhC
Confidence            4678999999852 33333333433  569999999876544332    223    22222221   2232      257


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|+|+.........   +...+.++++++++=
T Consensus       216 aDvVi~~~p~~~i~---~~~~~~mk~g~~lin  244 (300)
T 2rir_A          216 IDICINTIPSMILN---QTVLSSMTPKTLILD  244 (300)
T ss_dssp             CSEEEECCSSCCBC---HHHHTTSCTTCEEEE
T ss_pred             CCEEEECCChhhhC---HHHHHhCCCCCEEEE
Confidence            89999865432221   235678999887653

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=85.41  E-value=8.9  Score=28.05  Aligned_cols=84  Identities=12%  Similarity=0.101  Sum_probs=48.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEE-eCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-c
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-E   92 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~i-D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~   92 (187)
                      .+++++|-.|++.| .+..+++.+ ..+.+|+.+ +.+++..+...+.+...+  .++.++.+|..+.  +..+.+.- .
T Consensus         6 l~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (259)
T 3edm_A            6 FTNRTIVVAGAGRD-IGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAAD   82 (259)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            35678888887654 344444433 236788887 667766666666665544  4578888886431  22211100 0


Q ss_pred             CCCceeEEEEeC
Q 029803           93 NEGSFDYAFVDA  104 (187)
Q Consensus        93 ~~~~~D~i~~d~  104 (187)
                      ..++.|.++..+
T Consensus        83 ~~g~id~lv~nA   94 (259)
T 3edm_A           83 KFGEIHGLVHVA   94 (259)
T ss_dssp             HHCSEEEEEECC
T ss_pred             HhCCCCEEEECC
Confidence            025799988764

>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}

Probab=85.39  E-value=2.2  Score=28.34  Aligned_cols=68  Identities=16%  Similarity=0.249  Sum_probs=47.8

Q ss_pred             CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcc--cHHHHHHHH
Q 029803           43 EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM  117 (187)
Q Consensus        43 ~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~--~~~~~~~~~  117 (187)
                      ++.+|..+|-++......+..++..|+.. + ....+..+.+..+.     ..+||+|++|..-+.  -.++++++.
T Consensus        11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~-v-~~a~~g~~al~~~~-----~~~~DlillD~~MP~mdG~el~~~ir   80 (134)
T 3to5_A           11 KNMKILIVDDFSTMRRIVKNLLRDLGFNN-T-QEADDGLTALPMLK-----KGDFDFVVTDWNMPGMQGIDLLKNIR   80 (134)
T ss_dssp             TTCCEEEECSCHHHHHHHHHHHHHTTCCC-E-EEESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHHcCCcE-E-EEECCHHHHHHHHH-----hCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence            36789999999999999999999888642 2 34456666555442     258999999975443  345556554

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=85.23  E-value=10  Score=29.26  Aligned_cols=91  Identities=8%  Similarity=0.012  Sum_probs=50.3

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEE-EEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~-~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      +..+|.-|||| .|..-+......+++.+++ .+|.+++..+.+.+.+   +    + ....|..+.+..        ..
T Consensus        12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~---~----~-~~~~~~~~ll~~--------~~   75 (354)
T 3q2i_A           12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT---G----A-RGHASLTDMLAQ--------TD   75 (354)
T ss_dssp             SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH---C----C-EEESCHHHHHHH--------CC
T ss_pred             CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc---C----C-ceeCCHHHHhcC--------CC
Confidence            44689999998 4543333333332366766 5799887665554433   3    2 234566666543        57


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|+|++..........   +...|+.|--+++
T Consensus        76 ~D~V~i~tp~~~h~~~---~~~al~~gk~v~~  104 (354)
T 3q2i_A           76 ADIVILTTPSGLHPTQ---SIECSEAGFHVMT  104 (354)
T ss_dssp             CSEEEECSCGGGHHHH---HHHHHHTTCEEEE
T ss_pred             CCEEEECCCcHHHHHH---HHHHHHCCCCEEE
Confidence            8999986433332222   2334444444444

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=85.14  E-value=14  Score=29.94  Aligned_cols=93  Identities=18%  Similarity=0.164  Sum_probs=55.0

Q ss_pred             CEEEEEcccc-cH-HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-------C------C-CCcEEEEEcchHHHH
Q 029803           21 KKTIEIGVFT-GY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-------G------V-DHKINFIESEALSVL   84 (187)
Q Consensus        21 ~~vLeiG~g~-G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-------~------~-~~~~~~~~~d~~~~~   84 (187)
                      ++|.-||+|. |. .+..++.   .+..|+.+|.+++.++.+++.+...       +      . .....+ ..+. +  
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~---~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~-~--  110 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFAR---VGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSST-K--  110 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCG-G--
T ss_pred             CEEEEECcCHHHHHHHHHHHh---CCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCH-H--
Confidence            4688999875 32 2222332   2568999999999888776643210       1      0 111222 3343 2  


Q ss_pred             HHHhhcccCCCceeEEEEeCCCc--ccHHHHHHHHhccCCCeEEEE
Q 029803           85 DQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~~~~L~~gG~lv~  128 (187)
                       .+       ...|+|+......  .....++.+.+.++++.+|+.
T Consensus       111 -~~-------~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          111 -EL-------STVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             -GG-------TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             -HH-------CCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence             12       5689999865322  124577778888888877764

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=85.13  E-value=7.1  Score=28.69  Aligned_cols=82  Identities=10%  Similarity=0.039  Sum_probs=51.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH------HHHHhhcc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKYS   91 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~~   91 (187)
                      +++++|-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+....-..++.++.+|..+.      +...... 
T Consensus         7 ~~k~~lVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-   84 (265)
T 3lf2_A            7 SEAVAVVTGGSSG-IGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT-   84 (265)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH-
Confidence            5678888887654 344444433 236799999999988877777766522223588888886431      2222111 


Q ss_pred             cCCCceeEEEEeC
Q 029803           92 ENEGSFDYAFVDA  104 (187)
Q Consensus        92 ~~~~~~D~i~~d~  104 (187)
                        .++.|.++..+
T Consensus        85 --~g~id~lvnnA   95 (265)
T 3lf2_A           85 --LGCASILVNNA   95 (265)
T ss_dssp             --HCSCSEEEECC
T ss_pred             --cCCCCEEEECC
Confidence              25789888764

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=85.10  E-value=6  Score=28.86  Aligned_cols=83  Identities=12%  Similarity=0.087  Sum_probs=51.7

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHH------HHHHHhh
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS------VLDQLLK   89 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~------~~~~~~~   89 (187)
                      .+++++|-.|++.| .+..+++.+ ..+.+|+.++.+++.++...+.+...... .++.++.+|..+      .+.....
T Consensus         5 ~~~k~~lVTGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            5 KQKGLAIITGASQG-IGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             CCCCEEEEESTTSH-HHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence            35678888886544 334444333 12679999999998888777777654322 457888888643      1222211


Q ss_pred             cccCCCceeEEEEeC
Q 029803           90 YSENEGSFDYAFVDA  104 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~  104 (187)
                      .   .++.|.++..+
T Consensus        84 ~---~g~iD~lvnnA   95 (250)
T 3nyw_A           84 K---YGAVDILVNAA   95 (250)
T ss_dssp             H---HCCEEEEEECC
T ss_pred             h---cCCCCEEEECC
Confidence            1   25799988764

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=85.03  E-value=6.5  Score=31.54  Aligned_cols=76  Identities=18%  Similarity=0.165  Sum_probs=44.4

Q ss_pred             CCCEEEEEcccc-cHHHHHHHhhCCCCCEEE-EEeCCcchHHHHHHHHHhcCCCCcEEEEEc---chHHHHHHHhhcccC
Q 029803           19 NAKKTIEIGVFT-GYSLLLTALTIPEDGQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIES---EALSVLDQLLKYSEN   93 (187)
Q Consensus        19 ~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~-~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~~~~~~~~~~~~~   93 (187)
                      ++.+|.-||||. |..-+......+ +.+++ .+|.+++..+.+.+.+...+++. ...+.+   |..+.+.        
T Consensus        19 ~~~rvgiIG~G~~g~~h~~~l~~~~-~~~lvav~d~~~~~~~~~a~~~~~~g~~~-~~~~~~~~~~~~~ll~--------   88 (444)
T 2ixa_A           19 KKVRIAFIAVGLRGQTHVENMARRD-DVEIVAFADPDPYMVGRAQEILKKNGKKP-AKVFGNGNDDYKNMLK--------   88 (444)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHTCT-TEEEEEEECSCHHHHHHHHHHHHHTTCCC-CEEECSSTTTHHHHTT--------
T ss_pred             CCceEEEEecCHHHHHHHHHHHhCC-CcEEEEEEeCCHHHHHHHHHHHHhcCCCC-CceeccCCCCHHHHhc--------
Confidence            456899999872 332222233333 56665 56999888777766665555431 334432   4444332        


Q ss_pred             CCceeEEEEeC
Q 029803           94 EGSFDYAFVDA  104 (187)
Q Consensus        94 ~~~~D~i~~d~  104 (187)
                      ....|+|++..
T Consensus        89 ~~~vD~V~i~t   99 (444)
T 2ixa_A           89 DKNIDAVFVSS   99 (444)
T ss_dssp             CTTCCEEEECC
T ss_pred             CCCCCEEEEcC
Confidence            35799998864

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=85.00  E-value=9  Score=27.72  Aligned_cols=83  Identities=18%  Similarity=0.106  Sum_probs=52.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH--HHHHhhcc-cCC
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV--LDQLLKYS-ENE   94 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~-~~~   94 (187)
                      +++++|-.|+.. ..+..+++.+ ..+.+|+.++.+++..+...+.+...+  .++.++.+|..+.  +..+.+.- ...
T Consensus         8 ~~k~vlITGas~-giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            8 ENKVGIVTGSGG-GIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            567888888654 4444444444 236799999999988887777776543  4688888887532  22211100 002


Q ss_pred             CceeEEEEeC
Q 029803           95 GSFDYAFVDA  104 (187)
Q Consensus        95 ~~~D~i~~d~  104 (187)
                      +++|.++..+
T Consensus        85 g~id~li~~A   94 (253)
T 3qiv_A           85 GGIDYLVNNA   94 (253)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4799998765

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=84.99  E-value=10  Score=28.37  Aligned_cols=105  Identities=14%  Similarity=0.135  Sum_probs=60.5

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCc--chHHHHHHHHHhcCCCCcEEEEEcchHHH------HHHHhh
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNR--ETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLK   89 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~--~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~   89 (187)
                      +++++|-.|++. ..+..+++.+ ..+.+|+.++.+.  +..+...+.++..+  .++.++.+|..+.      +.....
T Consensus        48 ~~k~vlVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           48 KDRKALVTGGDS-GIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            457888888654 4444444444 2367899988763  34455555555544  4588888886431      222211


Q ss_pred             cccCCCceeEEEEeCCCc---c---------c-----------HHHHHHHHhccCCCeEEEEe
Q 029803           90 YSENEGSFDYAFVDADKD---N---------Y-----------CNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~~---~---------~-----------~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .   .++.|.++..+...   .         +           ....+.+.+.++++|.|+.-
T Consensus       125 ~---~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~i  184 (294)
T 3r3s_A          125 A---LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITT  184 (294)
T ss_dssp             H---HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             H---cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence            1   25789988764310   0         0           12345566788888877763

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=84.92  E-value=5  Score=35.95  Aligned_cols=77  Identities=8%  Similarity=-0.089  Sum_probs=52.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCC--EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc-----
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDG--QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS-----   91 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-----   91 (187)
                      +..+++|+.||.|..++-+..+   +.  .+.++|+++.+.+.-+.|+.      ...++.+|+.++.......+     
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~A---G~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~~di~~~~  609 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQA---GISDTLWAIEMWDPAAQAFRLNNP------GSTVFTEDCNILLKLVMAGETTNSR  609 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHH---TSEEEEEEECSSHHHHHHHHHHCT------TSEEECSCHHHHHHHHHHTCSBCTT
T ss_pred             CCCeEEEeccCccHHHHHHHHC---CCCceEEEEECCHHHHHHHHHhCC------CCccccccHHHHhhhccchhhhhhh
Confidence            3447999999999999888765   43  57799999998888777752      35678888876543211000     


Q ss_pred             ----cCCCceeEEEEeC
Q 029803           92 ----ENEGSFDYAFVDA  104 (187)
Q Consensus        92 ----~~~~~~D~i~~d~  104 (187)
                          ...+.+|+|+...
T Consensus       610 ~~~lp~~~~vDll~GGp  626 (1002)
T 3swr_A          610 GQRLPQKGDVEMLCGGP  626 (1002)
T ss_dssp             CCBCCCTTTCSEEEECC
T ss_pred             hhhcccCCCeeEEEEcC
Confidence                0124689888653

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=84.86  E-value=6.6  Score=29.85  Aligned_cols=94  Identities=13%  Similarity=0.125  Sum_probs=46.7

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCC--EEEEEeCCcchHHHHHHHHHh-cCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           22 KTIEIGVFTGYSLLLTALTIPEDG--QITAIDVNRETYEIGLPIIKK-AGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~~~~--~v~~iD~~~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      +|.-||+|.=..++....... +.  .|+.+|++++.++.....+.. .......++...+.    ..+       ...|
T Consensus         2 kI~VIGaG~vG~~la~~la~~-g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~----~a~-------~~aD   69 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLR-GSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGH----SEL-------ADAQ   69 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECG----GGG-------TTCS
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCH----HHh-------CCCC
Confidence            577888864333322222212 33  899999998765432222221 11112233333332    122       5689


Q ss_pred             EEEEeCCCcc----------------cHHHHHHHHhccCCCeEEEE
Q 029803           99 YAFVDADKDN----------------YCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        99 ~i~~d~~~~~----------------~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +|++......                ....++.+.+. .|++++++
T Consensus        70 vVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~  114 (304)
T 2v6b_A           70 VVILTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLV  114 (304)
T ss_dssp             EEEECC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEE
T ss_pred             EEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEE
Confidence            9998753211                13344555555 68998765

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=84.77  E-value=6  Score=28.55  Aligned_cols=82  Identities=12%  Similarity=0.044  Sum_probs=50.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch--H------HHHHHHh
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA--L------SVLDQLL   88 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~--~------~~~~~~~   88 (187)
                      .+++++|-.|++ |..+..+++.+ ..+.+|+.++.+++.++...+.+...+.. ...++..|.  .      .....+.
T Consensus        12 l~~k~vlITGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~d~d~~~~~~~~~~~~~~~   89 (247)
T 3i1j_A           12 LKGRVILVTGAA-RGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQP-QPLIIALNLENATAQQYRELAARVE   89 (247)
T ss_dssp             TTTCEEEESSTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSC-CCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCC-CceEEEeccccCCHHHHHHHHHHHH
Confidence            356778877765 44445555444 23679999999998888888877765532 456666554  1      1222221


Q ss_pred             hcccCCCceeEEEEeC
Q 029803           89 KYSENEGSFDYAFVDA  104 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~  104 (187)
                      ..   .+++|.++..+
T Consensus        90 ~~---~g~id~lv~nA  102 (247)
T 3i1j_A           90 HE---FGRLDGLLHNA  102 (247)
T ss_dssp             HH---HSCCSEEEECC
T ss_pred             Hh---CCCCCEEEECC
Confidence            11   25789988764

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=84.73  E-value=3.9  Score=30.69  Aligned_cols=94  Identities=10%  Similarity=-0.028  Sum_probs=53.7

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE--------cchHHHHHHHhhcc
Q 029803           21 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--------SEALSVLDQLLKYS   91 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--------~d~~~~~~~~~~~~   91 (187)
                      .+|.-||+|  ..+..++..+. .+.+|+.+|.+++.++..++.    +.    ....        .++.+. ....   
T Consensus         4 m~i~iiG~G--~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~----g~----~~~~~~~~~~~~~~~~~~-~~~~---   69 (316)
T 2ew2_A            4 MKIAIAGAG--AMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN----GL----IADFNGEEVVANLPIFSP-EEID---   69 (316)
T ss_dssp             CEEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH----CE----EEEETTEEEEECCCEECG-GGCC---
T ss_pred             CeEEEECcC--HHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC----CE----EEEeCCCeeEecceeecc-hhhc---
Confidence            478889885  44444444331 146899999998776655543    21    1110        000000 0110   


Q ss_pred             cCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..-..+|+||+..........++.+.+.++++.+++.
T Consensus        70 ~~~~~~d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~  106 (316)
T 2ew2_A           70 HQNEQVDLIIALTKAQQLDAMFKAIQPMITEKTYVLC  106 (316)
T ss_dssp             TTSCCCSEEEECSCHHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             ccCCCCCEEEEEeccccHHHHHHHHHHhcCCCCEEEE
Confidence            0012789999976555566777778888888877665

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=84.70  E-value=6.3  Score=28.74  Aligned_cols=82  Identities=12%  Similarity=0.076  Sum_probs=50.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch--H--H----HHHHHh
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA--L--S----VLDQLL   88 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~--~--~----~~~~~~   88 (187)
                      .+++++|-.|++.| .+..+++.+ ..+.+|+.++.+++.++...+.+...+. .++.++..|.  .  +    .+....
T Consensus        10 l~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (252)
T 3f1l_A           10 LNDRIILVTGASDG-IGREAAMTYARYGATVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRIA   87 (252)
T ss_dssp             TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHHH
Confidence            35678888886544 444444433 2368999999998888777766655432 2467777776  2  1    222222


Q ss_pred             hcccCCCceeEEEEeC
Q 029803           89 KYSENEGSFDYAFVDA  104 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~  104 (187)
                      ..   .+++|.++..+
T Consensus        88 ~~---~g~id~lv~nA  100 (252)
T 3f1l_A           88 VN---YPRLDGVLHNA  100 (252)
T ss_dssp             HH---CSCCSEEEECC
T ss_pred             Hh---CCCCCEEEECC
Confidence            11   35799988764

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=84.67  E-value=1  Score=34.40  Aligned_cols=88  Identities=15%  Similarity=0.153  Sum_probs=51.9

Q ss_pred             CEEEEEcccccH--HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC-----CcEEE----EEcchHHHHHHHhh
Q 029803           21 KKTIEIGVFTGY--SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-----HKINF----IESEALSVLDQLLK   89 (187)
Q Consensus        21 ~~vLeiG~g~G~--~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-----~~~~~----~~~d~~~~~~~~~~   89 (187)
                      ++|.-||+|.=.  .+..+++.   +..|+.++.++  .+.    +...++.     ...++    ...+.    ...  
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~---g~~V~~~~r~~--~~~----i~~~g~~~~~~~g~~~~~~~~~~~~~----~~~--   67 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRS---GEDVHFLLRRD--YEA----IAGNGLKVFSINGDFTLPHVKGYRAP----EEI--   67 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHT---SCCEEEECSTT--HHH----HHHTCEEEEETTCCEEESCCCEESCH----HHH--
T ss_pred             CEEEEECcCHHHHHHHHHHHHC---CCeEEEEEcCc--HHH----HHhCCCEEEcCCCeEEEeeceeecCH----HHc--
Confidence            468888886433  23333332   45799999875  232    3333321     11221    01122    122  


Q ss_pred             cccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           90 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                           ..+|+|++..........++.+.+.++++..++.
T Consensus        68 -----~~~D~vilavk~~~~~~~l~~l~~~l~~~~~iv~  101 (312)
T 3hn2_A           68 -----GPMDLVLVGLKTFANSRYEELIRPLVEEGTQILT  101 (312)
T ss_dssp             -----CCCSEEEECCCGGGGGGHHHHHGGGCCTTCEEEE
T ss_pred             -----CCCCEEEEecCCCCcHHHHHHHHhhcCCCCEEEE
Confidence                 5799999977666677888999899999987765

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=84.66  E-value=5.9  Score=30.49  Aligned_cols=73  Identities=14%  Similarity=0.001  Sum_probs=42.3

Q ss_pred             HcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEE-EEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVF--TGYSLLLTALTIPEDGQIT-AIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g--~G~~~~~la~~~~~~~~v~-~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ..++.+|.-||||  .|..-+......+++.+++ .+|.+++..+...+.+   +.    .-...|..+.+.        
T Consensus        15 ~~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~---~~----~~~~~~~~~ll~--------   79 (340)
T 1zh8_A           15 PLRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV---GN----PAVFDSYEELLE--------   79 (340)
T ss_dssp             -CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH---SS----CEEESCHHHHHH--------
T ss_pred             CCCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHh---CC----CcccCCHHHHhc--------
Confidence            3455689999998  2443333344442356664 5788887665544433   32    123456655554        


Q ss_pred             CCceeEEEEeC
Q 029803           94 EGSFDYAFVDA  104 (187)
Q Consensus        94 ~~~~D~i~~d~  104 (187)
                      ...+|+|++..
T Consensus        80 ~~~vD~V~i~t   90 (340)
T 1zh8_A           80 SGLVDAVDLTL   90 (340)
T ss_dssp             SSCCSEEEECC
T ss_pred             CCCCCEEEEeC
Confidence            25799999864

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=84.53  E-value=7.6  Score=28.76  Aligned_cols=86  Identities=9%  Similarity=0.066  Sum_probs=52.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHHH--HHHHhhcc-c
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSV--LDQLLKYS-E   92 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~--~~~~~~~~-~   92 (187)
                      .+++++|-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+...+.. .++.++.+|..+.  +..+.+.- .
T Consensus         9 l~~k~vlVTGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (281)
T 3svt_A            9 FQDRTYLVTGGGSG-IGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA   87 (281)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            35678888886544 444444433 23689999999998888777777665432 2688888887432  12111100 0


Q ss_pred             CCCceeEEEEeC
Q 029803           93 NEGSFDYAFVDA  104 (187)
Q Consensus        93 ~~~~~D~i~~d~  104 (187)
                      ..++.|.++..+
T Consensus        88 ~~g~id~lv~nA   99 (281)
T 3svt_A           88 WHGRLHGVVHCA   99 (281)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HcCCCCEEEECC
Confidence            025789888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	187
d1susa1	227	c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransfera	5e-47
d2avda1	219	c.66.1.1 (A:44-262) COMT domain-containing protein	4e-37
d2cl5a1	214	c.66.1.1 (A:3-216) Catechol O-methyltransferase, C	4e-26
d2bm8a1	232	c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI	5e-10
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	2e-05
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	7e-05
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	8e-05
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	0.002

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  151 bits (383), Expect = 5e-47
 Identities = 107/179 (59%), Positives = 142/179 (79%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQ ++MLL+L+NAK T+EIGV+TGYSLL TAL IPEDG+I A+D+N+E YE+GLP+IKKA
Sbjct: 48  GQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA 107

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
           GVDHKI+F E  AL VLD+++K  +N GS+D+ FVDADKDNY NYH+RL+ L+KVGG+  
Sbjct: 108 GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIG 167

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
           YDNTLW G+V  P +     +    R  +L+LN++LA DPR+++  + +GDGITICRRI
Sbjct: 168 YDNTLWNGSVVAPPDAPLRKYVRYYRDFVLELNKALAVDPRIEICMLPVGDGITICRRI 226

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 219

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (315), Expect = 4e-37
 Identities = 70/179 (39%), Positives = 105/179 (58%), Gaps = 7/179 (3%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
            QL+A L RL+ AKK +++G FTGYS L  AL +P DG++   +V+ +  E+G P+ ++A
Sbjct: 48  AQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA 107

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
             +HKI+     AL  LD+LL  +   G+FD A VDADK+N   Y+ER ++LL+ GGI  
Sbjct: 108 EAEHKIDLRLKPALETLDELLA-AGEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILA 166

Query: 128 YDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITICRRI 186
               LW G V  P +           + + +LN  +  D RV +S + LGDG+T+  +I
Sbjct: 167 VLRVLWRGKVLQPPKGDVAA------ECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 219

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 214

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 97.6 bits (242), Expect = 4e-26
 Identities = 35/177 (19%), Positives = 71/177 (40%), Gaps = 16/177 (9%)

Query: 8   GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA 67
           GQ+M  ++R  +    +E+G + GYS +  A  +    ++  +++N +   I   ++  A
Sbjct: 45  GQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA 104

Query: 68  GVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL--MKLLKVGGI 125
           G+  K+  +   +  ++ Q LK   +  + D  F+D  KD Y      L    LL+ G +
Sbjct: 105 GLQDKVTILNGASQDLIPQ-LKKKYDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTV 163

Query: 126 AVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDGITI 182
            + DN +  GT                   +   +          L ++ + DG+  
Sbjct: 164 LLADNVIVPGTPDF-------------LAYVRGSSSFECTHYSSYLEYMKVVDGLEK 207

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} Length = 232

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 54.4 bits (130), Expect = 5e-10
 Identities = 23/131 (17%), Positives = 42/131 (32%), Gaps = 14/131 (10%)

Query: 10  LMAMLLRLVNAKKTIEIGVFTGYSLLLTA---LTIPEDGQITAIDVNRETYEIGLPIIKK 66
           +   +L  +  +  +E+GV+ G SL         +  D Q+  ID +    +I       
Sbjct: 71  VYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQI------- 123

Query: 67  AGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHER-LMKLLKVGG- 124
                 +  I        D        E +    F+D    N  N  +  +  LL+ G  
Sbjct: 124 --PASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDY 181

Query: 125 IAVYDNTLWGG 135
             + D   +  
Sbjct: 182 FIIEDMIPYWY 192

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 21/126 (16%), Positives = 45/126 (35%), Gaps = 8/126 (6%)

Query: 9   QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG 68
            ++  ++ +      +E G  +G   L  +  +   G++ + +V ++ +++     K   
Sbjct: 88  NMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR 147

Query: 69  VDHKINFIESEALSVLDQL-----LKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG 123
              K++ +E    +V                 +FD   +D    N           LK G
Sbjct: 148 DSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDM--LNPHVTLPVFYPHLKHG 205

Query: 124 G-IAVY 128
           G  AVY
Sbjct: 206 GVCAVY 211

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 7e-05
 Identities = 18/154 (11%), Positives = 46/154 (29%), Gaps = 6/154 (3%)

Query: 9   QLMAMLLRLVNA--KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKK 66
             M  L    ++   + +E+G     +   + +      +   I+ N   ++       +
Sbjct: 41  PYMHALAAAASSKGGRVLEVGFGMAIAA--SKVQEAPIDEHWIIECNDGVFQRLRDWAPR 98

Query: 67  AGVDHKINFIESEALSVLDQLLKYSEN-EGSFDYAFVDADKDNYCNYHERLMKLLKVGGI 125
                       E ++       +      ++  +        +        +LLK GG+
Sbjct: 99  QTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGV 158

Query: 126 AVYDNTLWGGTVAVPEEQ-VPDHFRGSSRQAILD 158
             Y N    G +   +   +   F  +   A+L+
Sbjct: 159 LTYCNLTSWGELMKSKYSDITIMFEETQVPALLE 192

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.6 bits (92), Expect = 8e-05
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 8/119 (6%)

Query: 11  MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD 70
           +     +    + +E G  +G   L     +   GQ+ + +   +  E     +      
Sbjct: 88  IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ 147

Query: 71  HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGG-IAVY 128
              N+       V+  L      +GS D A +D          + + +LL  GG + VY
Sbjct: 148 PPDNWRL-----VVSDLADSELPDGSVDRAVLDM--LAPWEVLDAVSRLLVAGGVLMVY 199

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 17/118 (14%), Positives = 42/118 (35%), Gaps = 10/118 (8%)

Query: 10  LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV 69
            + M   L      +E+GV +G         +   G +T ++ + +  +  +  + +   
Sbjct: 76  YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD 135

Query: 70  DHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAV 127
              +    S+    +              Y  V AD  +  N+ +++  ++K G +A 
Sbjct: 136 IGNVRTSRSDIADFISD----------QMYDAVIADIPDPWNHVQKIASMMKPGSVAT 183

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	100.0
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	100.0
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.97
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.85
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.8
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.77
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.76
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.75
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.75
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.75
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.75
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.74
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.73
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.72
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.71
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.71
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.71
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.7
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.7
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.69
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.69
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.69
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.68
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.68
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.68
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.67
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.67
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.66
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.66
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.65
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.65
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.65
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.65
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.65
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.65
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.63
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.62
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.62
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.62
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.62
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.62
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.61
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.6
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.59
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.59
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.59
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.58
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.57
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.57
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.57
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.56
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.56
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.54
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.54
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	99.53
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.53
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.53
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.49
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.49
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.47
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.47
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.46
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.46
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	99.46
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	99.45
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.43
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.43
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	99.43
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.43
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.42
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	99.4
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.38
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.37
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.35
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.32
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.3
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	99.29
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.24
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.22
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	99.2
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	99.15
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.14
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	99.11
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	99.1
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.97
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.89
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.89
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.82
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.8
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.78
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.76
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.74
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.67
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.58
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.57
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.53
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.47
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.46
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.15
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	98.07
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.98
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	97.95
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.92
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.9
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.88
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.87
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.8
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.8
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.77
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.71
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.71
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.65
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	97.6
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.5
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.27
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.23
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.21
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.15
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.13
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.13
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.13
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.0
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.99
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.94
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.79
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.76
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.75
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.65
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	96.62
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.5
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.36
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.34
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	96.28
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	96.24
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.16
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.11
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.94
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	95.9
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.7
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	95.55
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	95.33
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.24
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	95.12
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	94.96
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.57
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	94.49
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.1
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	93.97
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.8
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	93.62
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	93.48
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.72
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	92.61
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	92.49
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	92.25
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	92.0
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.9
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	91.78
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	91.73
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	91.5
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	91.43
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	91.42
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	91.18
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	91.02
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	90.93
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	90.85
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	90.81
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	90.35
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	90.16
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	90.04
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	89.84
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.79
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	89.6
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	89.55
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	89.43
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	89.4
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	89.06
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	89.03
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.02
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	88.75
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	88.72
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	88.58
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	88.35
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	88.07
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	87.76
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	87.71
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	87.57
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	87.49
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	87.17
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	86.99
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	86.67
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	86.56
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	86.43
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	86.25
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	86.1
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	85.86
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	85.69
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	85.05
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	85.03
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	85.02
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	84.78
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	84.71
d1p6qa_	129	CheY protein {Sinorhizobium meliloti, CheY2 [TaxId	84.45
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	84.3
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	84.28
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	84.21
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	84.05
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	83.92
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	83.87
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	83.61
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	83.5
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	83.48
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	83.38
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	83.29
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	83.24
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	83.04
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	82.8
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	82.39
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	82.35
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	82.28
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	82.25
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	82.16
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	82.07
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	81.88
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	81.65
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	81.59
d1w25a1	139	Response regulator PleD, receiver domain {Caulobac	81.44
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	81.21
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	81.17
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	81.12
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	80.88
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	80.83
d1a2oa1	140	Methylesterase CheB, N-terminal domain {Salmonella	80.72
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	80.59
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	80.51
d1yioa2	128	Response regulatory protein StyR, N-terminal domai	80.38
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	80.28
d1zh2a1	119	Transcriptional regulatory protein KdpE, N-termina	80.09
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	80.08
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	80.01

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=7.1e-41  Score=248.88  Aligned_cols=186  Identities=59%  Similarity=0.998  Sum_probs=168.9

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |++++.+|++|+.+++..+|++||||||++|++++++|.+++++++++++|.+++..+.|++++++.++.++++++.+++
T Consensus        41 m~~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a  120 (227)
T d1susa1          41 MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPA  120 (227)
T ss_dssp             GSCCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHH
Confidence            78999999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCC-cccchHHHHHHH
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDH-FRGSSRQAILDL  159 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  159 (187)
                      .+.++.+.......++||+||+|+++..|..+++.++++|+|||+|++||++|+|.+.++....... .+. ....+++|
T Consensus       121 ~~~L~~l~~~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~DNvl~~G~v~~~~~~~~~~~~~~-~~~~i~~~  199 (227)
T d1susa1         121 LPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPDAPLRKYVRY-YRDFVLEL  199 (227)
T ss_dssp             HHHHHHHHHCGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEETTTGGGGGGCCTTCCCCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHhccccCCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEccCCCCCcccCCcccchHHHHHH-HHHHHHHH
Confidence            9999987543223568999999999999999999999999999999999999999998876553332 222 45679999


Q ss_pred             HHHhhcCCCeEEEeeecCCceEEEEEcC
Q 029803          160 NRSLADDPRVQLSHVALGDGITICRRIF  187 (187)
Q Consensus       160 ~~~l~~~~~~~~~~lp~~~G~~~~~~~~  187 (187)
                      ++.+.+||+++++++|+++|+.|++|.|
T Consensus       200 n~~i~~d~r~~~~llPigDGl~i~~K~~  227 (227)
T d1susa1         200 NKALAVDPRIEICMLPVGDGITICRRIK  227 (227)
T ss_dssp             HHHHHHCTTBCCEEECSTTCEEEECBCC
T ss_pred             HHHHhcCCCEEEEEeecCCeeEEEEECC
Confidence            9999999999999999999999999976

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-39  Score=240.61  Aligned_cols=179  Identities=39%  Similarity=0.658  Sum_probs=165.4

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |++++.++++|+.+++..++++|||||||+|++++++|.+++++++++++|.+++..+.|+++++..++.++++++.+|+
T Consensus        41 ~~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda  120 (219)
T d2avda1          41 SMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPA  120 (219)
T ss_dssp             GSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeeh
Confidence            67899999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHH
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLN  160 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (187)
                      .+.++.+... +..++||+||+|+++..|..+++.++++|+|||+|+++|++|.|.+.++....      +.+.++++|+
T Consensus       121 ~e~l~~~~~~-~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~G~v~~~~~~d------~~~~~ir~~~  193 (219)
T d2avda1         121 LETLDELLAA-GEAGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGD------VAAECVRNLN  193 (219)
T ss_dssp             HHHHHHHHHT-TCTTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEECCSGGGGGGSCCTTC------HHHHHHHHHH
T ss_pred             hhcchhhhhh-cccCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEeCCcccCcccCcccCC------HHHHHHHHHH
Confidence            9988876543 33568999999999999999999999999999999999999999998875331      1677899999


Q ss_pred             HHhhcCCCeEEEeeecCCceEEEEEc
Q 029803          161 RSLADDPRVQLSHVALGDGITICRRI  186 (187)
Q Consensus       161 ~~l~~~~~~~~~~lp~~~G~~~~~~~  186 (187)
                      +.++++|+++++++|+++|+++++|.
T Consensus       194 ~~i~~d~r~~~~llPigdGl~ia~Kl  219 (219)
T d2avda1         194 ERIRRDVRVYISLLPLGDGLTLAFKI  219 (219)
T ss_dssp             HHHHHCTTEEEEEECSTTCEEEEEEC
T ss_pred             HHHHhCCCEEEEEeecCCeeEEEEeC
Confidence            99999999999999999999999984

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=2.9e-31  Score=195.69  Aligned_cols=165  Identities=21%  Similarity=0.333  Sum_probs=145.3

Q ss_pred             CCCcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            1 MLLLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         1 ~~~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      |++++.+|++|..+++..+|++|||||||+|++++++|.+++++++++++|.++++++.|+++++..++.++++++.||+
T Consensus        38 m~i~~~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~  117 (214)
T d2cl5a1          38 MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGAS  117 (214)
T ss_dssp             CSCHHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccc
Confidence            78999999999999999999999999999999999999999878999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHH--HHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHH
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNY--HERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILD  158 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~--~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (187)
                      .+.++.+... ...++||+||+|+++..+...  +.+++++|+|||+|++||++|+|                    ..+
T Consensus       118 ~e~l~~l~~~-~~~~~~D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~g--------------------~~~  176 (214)
T d2cl5a1         118 QDLIPQLKKK-YDVDTLDMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVPG--------------------TPD  176 (214)
T ss_dssp             HHHGGGHHHH-SCCCCEEEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEESCCCCCC--------------------CHH
T ss_pred             cccccchhhc-ccccccceeeecccccccccHHHHHHHhCccCCCcEEEEeCcCCCC--------------------ChH
Confidence            9988776433 234689999999988887664  56677899999999999999977                    356


Q ss_pred             HHHHhhcCCCeEEEe-------eecCCceEEEEEc
Q 029803          159 LNRSLADDPRVQLSH-------VALGDGITICRRI  186 (187)
Q Consensus       159 ~~~~l~~~~~~~~~~-------lp~~~G~~~~~~~  186 (187)
                      +.+++++++++....       +|+++|+.+++.+
T Consensus       177 ~~~~vr~~~~~~~~~~~~~~~~~~~~dgl~~s~~~  211 (214)
T d2cl5a1         177 FLAYVRGSSSFECTHYSSYLEYMKVVDGLEKAIYQ  211 (214)
T ss_dssp             HHHHHHHCTTEEEEEEEEECTTSSSEEEEEEEEEC
T ss_pred             HHHHHhccCceeehhhhhcceecccCCceEEEEec
Confidence            777788888887664       6889999998864

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.85  E-value=5.2e-20  Score=132.32  Aligned_cols=120  Identities=20%  Similarity=0.176  Sum_probs=104.1

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      ...++..++-..+...++.+|||||||+|..++.+|..   ..+|+++|+++++++.|++|++.+++.++++++++|+.+
T Consensus        17 t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~   93 (186)
T d1l3ia_          17 TAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE   93 (186)
T ss_dssp             CCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH
T ss_pred             ChHHHHHHHHHhcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhh
Confidence            34556666666778889999999999999999999875   469999999999999999999999998899999999987


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ....       .+.||+||++........+++.+.+.|+|||.+++....
T Consensus        94 ~~~~-------~~~~D~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~~~  136 (186)
T d1l3ia_          94 ALCK-------IPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTAIL  136 (186)
T ss_dssp             HHTT-------SCCEEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred             cccc-------cCCcCEEEEeCccccchHHHHHHHHHhCcCCEEEEEeec
Confidence            6543       479999999988888889999999999999999886443

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=7.5e-20  Score=136.74  Aligned_cols=121  Identities=20%  Similarity=0.232  Sum_probs=101.1

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      .+.....|...+...++++|||||||+|..+..+++..  +.+|+++|+|+.+++.++++....++.+++++.++|+.+.
T Consensus        18 ~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~   95 (245)
T d1nkva_          18 TEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   95 (245)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             CHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence            34444556666667888999999999999999998865  4799999999999999999999999999999999998764


Q ss_pred             HHHHhhcccCCCceeEEEEeC---CCcccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDA---DKDNYCNYHERLMKLLKVGGIAVYDNTLWG  134 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~---~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                      .        ..++||+|++..   +..+...+++++.+.|||||.+++.+..+.
T Consensus        96 ~--------~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~  141 (245)
T d1nkva_          96 V--------ANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWR  141 (245)
T ss_dssp             C--------CSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEET
T ss_pred             c--------ccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEecccc
Confidence            2        257899999864   334678899999999999999999876543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=1e-17  Score=125.47  Aligned_cols=115  Identities=20%  Similarity=0.258  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHH-HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            5 TIHGQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         5 ~~~~~ll~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      +.+..+|..+.. ..++++|||+|||+|..++.+++.   +.+|+++|+++.+++.|++|++.+++.  .+++++|..+.
T Consensus       105 ~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~  179 (254)
T d2nxca1         105 ETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA  179 (254)
T ss_dssp             HHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH
T ss_pred             chhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCc--eeEEecccccc
Confidence            456667777766 446689999999999999988764   569999999999999999999998875  57889998764


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ++        .++||+|++.........+++.+.+.|||||++++++.+
T Consensus       180 ~~--------~~~fD~V~ani~~~~l~~l~~~~~~~LkpGG~lilSgil  220 (254)
T d2nxca1         180 LP--------FGPFDLLVANLYAELHAALAPRYREALVPGGRALLTGIL  220 (254)
T ss_dssp             GG--------GCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             cc--------ccccchhhhccccccHHHHHHHHHHhcCCCcEEEEEecc
Confidence            33        379999999876666778889999999999999997654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.76  E-value=3.2e-18  Score=126.86  Aligned_cols=116  Identities=17%  Similarity=0.212  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      ....+|-..+..+++.+|||||||+|..+..+++..   .+|+++|+|+.+++.|++++...++. ++.++++|+.+. +
T Consensus         3 ~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~-~~~~~~~d~~~~-~   77 (234)
T d1xxla_           3 HSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESL-P   77 (234)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBC-C
T ss_pred             hHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhcccccc-cccccccccccc-c
Confidence            345677788889999999999999999999999863   59999999999999999999988875 599999998753 1


Q ss_pred             HHhhcccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           86 QLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                            ..+++||+|++...   ..+...+++++.++|+|||++++.+..
T Consensus        78 ------~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~  121 (234)
T d1xxla_          78 ------FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHY  121 (234)
T ss_dssp             ------SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ------ccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcC
Confidence                  13579999998753   345778999999999999999886543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=1.2e-18  Score=130.93  Aligned_cols=118  Identities=14%  Similarity=0.156  Sum_probs=100.7

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc--CCCCcEEEEEcch
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA--GVDHKINFIESEA   80 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--~~~~~~~~~~~d~   80 (187)
                      +.|.-..++-.++...++.+|||+|||+|+.+.++|..+.++++|+++|.++++++.|+++++..  ....++++.++|.
T Consensus        80 iypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~  159 (264)
T d1i9ga_          80 IYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL  159 (264)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred             cchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccc
Confidence            45667778888889999999999999999999999999877899999999999999999999874  3446899999998


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+.  .     ..+++||.||+|.  ++....++++.+.|||||.+++.
T Consensus       160 ~~~--~-----~~~~~fDaV~ldl--p~P~~~l~~~~~~LkpGG~lv~~  199 (264)
T d1i9ga_         160 ADS--E-----LPDGSVDRAVLDM--LAPWEVLDAVSRLLVAGGVLMVY  199 (264)
T ss_dssp             GGC--C-----CCTTCEEEEEEES--SCGGGGHHHHHHHEEEEEEEEEE
T ss_pred             ccc--c-----ccCCCcceEEEec--CCHHHHHHHHHhccCCCCEEEEE
Confidence            652  1     1357999999985  44567889999999999999884

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=2e-18  Score=126.45  Aligned_cols=114  Identities=21%  Similarity=0.334  Sum_probs=91.9

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      |.....+-.++...++.+|||||||+|+.+..+++.+.+.++|+++|+++++++.|+++++..+.. ++.++++|+.+..
T Consensus        61 P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~-n~~~~~~d~~~~~  139 (213)
T d1dl5a1          61 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGYYGV  139 (213)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCC
T ss_pred             chhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhccc-ccccccCchHHcc
Confidence            333333344557889999999999999999999998876899999999999999999999998876 5888899987643


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.       .++||.|++.+...+.+   +.+++.|||||.|++.
T Consensus       140 ~~-------~~~fD~I~~~~~~~~~p---~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         140 PE-------FSPYDVIFVTVGVDEVP---ETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             GG-------GCCEEEEEECSBBSCCC---HHHHHHEEEEEEEEEE
T ss_pred             cc-------ccchhhhhhhccHHHhH---HHHHHhcCCCcEEEEE
Confidence            32       37899999987655543   3456789999999884

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.75  E-value=7.2e-19  Score=131.31  Aligned_cols=110  Identities=14%  Similarity=0.225  Sum_probs=91.8

Q ss_pred             HHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   89 (187)
Q Consensus        10 ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   89 (187)
                      ++-..+...++.+|||+|||+|+.+.++|+.+.+.++|+++|.++++++.|+++++.++...++++.++|..+.+     
T Consensus        76 ~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~-----  150 (250)
T d1yb2a1          76 YIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI-----  150 (250)
T ss_dssp             -----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC-----
T ss_pred             HHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc-----
Confidence            344445678999999999999999999999876689999999999999999999998777778999999987642     


Q ss_pred             cccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           90 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                         .++.||.||+|.  .....+++++.+.|||||++++.
T Consensus       151 ---~~~~fD~V~ld~--p~p~~~l~~~~~~LKpGG~lv~~  185 (250)
T d1yb2a1         151 ---SDQMYDAVIADI--PDPWNHVQKIASMMKPGSVATFY  185 (250)
T ss_dssp             ---CSCCEEEEEECC--SCGGGSHHHHHHTEEEEEEEEEE
T ss_pred             ---ccceeeeeeecC--CchHHHHHHHHHhcCCCceEEEE
Confidence               247899999975  34457889999999999999984

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.75  E-value=1.9e-18  Score=130.41  Aligned_cols=117  Identities=20%  Similarity=0.277  Sum_probs=102.1

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      +.|.-..++-.++...++.+|||+|||+|+.+.++|+.+.++++|+++|.++++++.|+++++..++.+++.+..+|...
T Consensus        87 iypkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~  166 (266)
T d1o54a_          87 VYPKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE  166 (266)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG
T ss_pred             cchHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccc
Confidence            45666778888889999999999999999999999999877899999999999999999999999998889999999754


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           83 VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+        ....||.||+|.  ++...+++++.+.|||||.+++.
T Consensus       167 ~~--------~~~~~D~V~~d~--p~p~~~l~~~~~~LKpGG~lv~~  203 (266)
T d1o54a_         167 GF--------DEKDVDALFLDV--PDPWNYIDKCWEALKGGGRFATV  203 (266)
T ss_dssp             CC--------SCCSEEEEEECC--SCGGGTHHHHHHHEEEEEEEEEE
T ss_pred             cc--------cccceeeeEecC--CCHHHHHHHHHhhcCCCCEEEEE
Confidence            32        247899999975  45567899999999999999874

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.74  E-value=2.8e-18  Score=126.59  Aligned_cols=114  Identities=14%  Similarity=0.246  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      .++++.. +...++.+|||||||+|..+..+++.   ..+|+++|+++++++.|++++...+.. +++++++|+.+. + 
T Consensus         4 ~~~ll~~-~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~~-~i~~~~~d~~~l-~-   76 (231)
T d1vl5a_           4 LAKLMQI-AALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQM-P-   76 (231)
T ss_dssp             HHHHHHH-HTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CC-C-
T ss_pred             HHHHHHh-cCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhcccccccc-cccccccccccc-c-
Confidence            3455555 56778899999999999999999886   459999999999999999999988865 699999998763 1 


Q ss_pred             HhhcccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           87 LLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +     ..++||+|++...   ..+...+++++.++|+|||++++.+..
T Consensus        77 ~-----~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~  120 (231)
T d1vl5a_          77 F-----TDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNS  120 (231)
T ss_dssp             S-----CTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             c-----cccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            1     2579999998753   345778999999999999999986543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.4e-18  Score=126.86  Aligned_cols=115  Identities=18%  Similarity=0.276  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHH-HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC----CcEEEEEcc
Q 029803            5 TIHGQLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD----HKINFIESE   79 (187)
Q Consensus         5 ~~~~~ll~~l~-~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~----~~~~~~~~d   79 (187)
                      ..++.+++.|. ...++.+|||||||+|+.+..+|+...+.++|+++|.++++++.|++++++.++.    .++++..+|
T Consensus        61 ~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD  140 (224)
T d1i1na_          61 HMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGD  140 (224)
T ss_dssp             HHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESC
T ss_pred             HHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEee
Confidence            35566777665 4567889999999999999999988766899999999999999999999876643    468999999


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           80 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +....+.       ..+||.|++.+.....+   +.+.+.|||||.+++.
T Consensus       141 ~~~~~~~-------~~~fD~I~~~~~~~~ip---~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         141 GRMGYAE-------EAPYDAIHVGAAAPVVP---QALIDQLKPGGRLILP  180 (224)
T ss_dssp             GGGCCGG-------GCCEEEEEECSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             cccccch-------hhhhhhhhhhcchhhcC---HHHHhhcCCCcEEEEE
Confidence            8764332       47899999987655543   3467899999999983

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.72  E-value=4.3e-18  Score=129.59  Aligned_cols=108  Identities=13%  Similarity=0.202  Sum_probs=92.3

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||||||+|..+..+++..  +.+|+++|+++.+++.|+++....++.++++++++|+.+. +      .+.++
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l-~------~~~~s  135 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI-P------CEDNS  135 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC-S------SCTTC
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhcccccccccccccccccccccc-c------ccccc
Confidence            4577899999999999999999864  4699999999999999999999999998999999998764 1      13579


Q ss_pred             eeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           97 FDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        97 ~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ||+|++...   .++...+++++.++|||||.+++.+...
T Consensus       136 fD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~  175 (282)
T d2o57a1         136 YDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMK  175 (282)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             cchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeec
Confidence            999998642   3456789999999999999999976654

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.71  E-value=6e-17  Score=119.25  Aligned_cols=108  Identities=12%  Similarity=0.146  Sum_probs=89.8

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ..++.+|||+|||+|..+..+++... ++.+|+++|+|++|++.|+++++..+...++++..+|..+.         ..+
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~---------~~~  107 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV---------EIK  107 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTC---------CCC
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcc---------ccc
Confidence            34667999999999999999998653 47899999999999999999999888777899999987653         246


Q ss_pred             ceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           96 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        96 ~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .+|+|++..     ..++...+++++.+.|+|||.+++.+...
T Consensus       108 ~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~  150 (225)
T d1im8a_         108 NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR  150 (225)
T ss_dssp             SEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             cceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccc
Confidence            889988763     23466789999999999999999976543

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=1.2e-17  Score=128.92  Aligned_cols=120  Identities=14%  Similarity=0.209  Sum_probs=95.6

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc----------CCCCc
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA----------GVDHK   72 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~----------~~~~~   72 (187)
                      +.|.-..++-.++...++.+|||+|||+|+.++.+|+.+.++++|+++|+++++++.|++|++..          +..++
T Consensus        82 iypkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~n  161 (324)
T d2b25a1          82 TFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN  161 (324)
T ss_dssp             CCHHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred             cccccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence            34555667777789999999999999999999999999877899999999999999999999864          33467


Q ss_pred             EEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           73 INFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        73 ~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +++.++|+.+....+     ....||.||+|.  ......++++.+.|||||.+++-
T Consensus       162 v~~~~~di~~~~~~~-----~~~~fD~V~LD~--p~P~~~l~~~~~~LKpGG~lv~~  211 (324)
T d2b25a1         162 VDFIHKDISGATEDI-----KSLTFDAVALDM--LNPHVTLPVFYPHLKHGGVCAVY  211 (324)
T ss_dssp             EEEEESCTTCCC------------EEEEEECS--SSTTTTHHHHGGGEEEEEEEEEE
T ss_pred             eeEEecchhhccccc-----CCCCcceEeecC--cCHHHHHHHHHHhccCCCEEEEE
Confidence            999999986543322     146899999985  23446789999999999999873

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.71  E-value=5.9e-17  Score=116.83  Aligned_cols=109  Identities=16%  Similarity=0.184  Sum_probs=88.4

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHH
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQL   87 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~   87 (187)
                      ++|...+...++++|||+|||+|..++.++...   .+++++|+++.+++.++++++.+++.+ ++++..+|..+.+   
T Consensus        42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~---  115 (194)
T d1dusa_          42 KILVENVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV---  115 (194)
T ss_dssp             HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC---
T ss_pred             HHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh---
Confidence            444444456788999999999999999999864   489999999999999999999888863 6899999986532   


Q ss_pred             hhcccCCCceeEEEEeCCCc----ccHHHHHHHHhccCCCeEEEE
Q 029803           88 LKYSENEGSFDYAFVDADKD----NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~~----~~~~~~~~~~~~L~~gG~lv~  128 (187)
                           .+++||+|+++....    ....+++.+.++|+|||.+++
T Consensus       116 -----~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i  155 (194)
T d1dusa_         116 -----KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV  155 (194)
T ss_dssp             -----TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -----ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEE
Confidence                 247999999985422    235578889999999998876

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.70  E-value=6.9e-17  Score=120.43  Aligned_cols=108  Identities=17%  Similarity=0.317  Sum_probs=86.3

Q ss_pred             HHHHHHH---HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803           10 LMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus        10 ll~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      ++..+..   ..++++|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...+.  +++++++|+.++-  
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~--  101 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIA--  101 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCC--
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc--cchheehhhhhcc--
Confidence            4444443   335678999999999999999985   56999999999999999999988765  5999999987641  


Q ss_pred             HhhcccCCCceeEEEEeCC------CcccHHHHHHHHhccCCCeEEEEeC
Q 029803           87 LLKYSENEGSFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~------~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                            .+++||+|++...      .++...+++++.++|+|||+++++-
T Consensus       102 ------~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         102 ------FKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             ------CCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ------cccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence                  1468999998632      1345578999999999999999864

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.70  E-value=2e-17  Score=125.84  Aligned_cols=108  Identities=18%  Similarity=0.296  Sum_probs=90.7

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      +..+|.+|||||||+|..+..++..++++.+|+++|+++.+++.|++++...+.  ++++.++|+.+. +       ..+
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~-~-------~~~   93 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEI-E-------LND   93 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTC-C-------CSS
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccccccc-c-------ccC
Confidence            357889999999999999999999887678999999999999999999987664  589999998653 1       136


Q ss_pred             ceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           96 SFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        96 ~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +||+|++...   .++....++++.+.|||||.+++.+..|
T Consensus        94 ~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~  134 (281)
T d2gh1a1          94 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHW  134 (281)
T ss_dssp             CEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             CceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECCc
Confidence            8999998863   3456789999999999999998866543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.69  E-value=8e-17  Score=111.81  Aligned_cols=114  Identities=19%  Similarity=0.244  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      ..++..+....++++|||+|||+|..++.++...  ..+|+++|.++++++.++++++..+..++++++++|+.+.++..
T Consensus         3 e~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rg--a~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~   80 (152)
T d2esra1           3 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRG--MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL   80 (152)
T ss_dssp             HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTT--CCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB
T ss_pred             HHHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhC--cceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc
Confidence            3455555556688999999999999999888753  25999999999999999999999999889999999999877653


Q ss_pred             hhcccCCCceeEEEEeCCC--cccHHHHHHHH--hccCCCeEEEEe
Q 029803           88 LKYSENEGSFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYD  129 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~--~~~~~~~~~~~--~~L~~gG~lv~~  129 (187)
                            .++||+||+|+..  ..+...++.+.  ++|+|+|+++++
T Consensus        81 ------~~~fDiIf~DPPy~~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          81 ------TGRFDLVFLDPPYAKETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             ------CSCEEEEEECCSSHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ------ccccceeEechhhccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence                  5789999999642  23445566554  579999999985

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=1.7e-16  Score=120.99  Aligned_cols=116  Identities=9%  Similarity=0.094  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHH---HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            6 IHGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         6 ~~~~ll~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      .+...+..++.   ..++.+|||||||.|..+.++|+..  +++|+++++|++.++.+++++...++.+++++...|...
T Consensus        45 Aq~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~--g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~  122 (291)
T d1kpia_          45 AQYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEY--DVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE  122 (291)
T ss_dssp             HHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhc--CcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc
Confidence            33444444444   6688999999999999999999876  479999999999999999999999999999999998642


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCC------------cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                                .+++||.|++-...            +++..+++.+.++|||||.++++.+..
T Consensus       123 ----------~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~  175 (291)
T d1kpia_         123 ----------FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI  175 (291)
T ss_dssp             ----------CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred             ----------cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence                      15799999976421            357899999999999999999987764

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=1.3e-16  Score=121.13  Aligned_cols=114  Identities=10%  Similarity=0.146  Sum_probs=94.4

Q ss_pred             HHHHHHHHHH---HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            7 HGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         7 ~~~ll~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      +...+..++.   ..++.+|||||||.|..+.++++..  +.+|+++|+|+++++.|+++++..++..++.+...|..+.
T Consensus        37 Q~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~--g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~  114 (280)
T d2fk8a1          37 QYAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF  114 (280)
T ss_dssp             HHHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhC--ceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh
Confidence            3344555554   5678899999999999999998775  4799999999999999999999999988899988886542


Q ss_pred             HHHHhhcccCCCceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           84 LDQLLKYSENEGSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                                .++||.|++-..     .+++..+++.+.++|||||.++++.+.
T Consensus       115 ----------~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~  158 (280)
T d2fk8a1         115 ----------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSV  158 (280)
T ss_dssp             ----------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             ----------ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEee
Confidence                      479999987642     345688999999999999999997654

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.68  E-value=1.1e-16  Score=119.27  Aligned_cols=109  Identities=16%  Similarity=0.163  Sum_probs=86.3

Q ss_pred             HHHHHHHHHH--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            8 GQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         8 ~~ll~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      ..++..++..  .++++|||+|||+|..+..+++.   +.+++++|+|++|++.|++++...+.  +++++++|+.++- 
T Consensus        24 ~~~~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~-   97 (246)
T d1y8ca_          24 SDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLN-   97 (246)
T ss_dssp             HHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCC-
T ss_pred             HHHHHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCc--cceeeccchhhhc-
Confidence            3445444443  45689999999999999999986   56999999999999999999887665  5899999987641 


Q ss_pred             HHhhcccCCCceeEEEEeCC-------CcccHHHHHHHHhccCCCeEEEEe
Q 029803           86 QLLKYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                             ..++||+|++-..       ......+++++.++|+|||.++++
T Consensus        98 -------~~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          98 -------INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             -------CSCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             -------ccccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEEE
Confidence                   1478999997432       234456899999999999999974

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=2.1e-16  Score=120.11  Aligned_cols=115  Identities=9%  Similarity=0.123  Sum_probs=96.7

Q ss_pred             HHHHHHHHHHH---HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            6 IHGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         6 ~~~~ll~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      .+.+.+..++.   ..++.+|||||||.|..++++|+..  +++|+++++|++.++.|++++...++.+++++..+|..+
T Consensus        46 AQ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~  123 (285)
T d1kpga_          46 AQIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ  123 (285)
T ss_dssp             HHHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc
Confidence            34444455444   6788999999999999999999875  589999999999999999999999999999999999754


Q ss_pred             HHHHHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           83 VLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      .          +++||.|++-.     ...++..+++.+.++|+|||.++++++.
T Consensus       124 ~----------~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~  168 (285)
T d1kpga_         124 F----------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT  168 (285)
T ss_dssp             C----------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             c----------cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence            3          47899998764     2355688999999999999999998765

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.68  E-value=4.5e-16  Score=120.52  Aligned_cols=110  Identities=23%  Similarity=0.319  Sum_probs=93.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++++|||+|||+|..++.++...  ..+|+++|+++.+++.+++|++.+++.++++++++|+.+.+..+...   ..+|
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~g--a~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~---~~~f  218 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAG--ADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKK---GEKF  218 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHT---TCCE
T ss_pred             CCCCeeecccCcccchhhhhhhcC--CcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhc---cCCC
Confidence            467899999999999999998763  35899999999999999999999999888999999999887665433   5799


Q ss_pred             eEEEEeCCC------------cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           98 DYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        98 D~i~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      |+|++|+..            ..|..++..+.++|+|||+|++....
T Consensus       219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            999999642            13566788889999999999986443

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.67  E-value=5.5e-16  Score=110.57  Aligned_cols=119  Identities=14%  Similarity=0.166  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHH
Q 029803            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLD   85 (187)
Q Consensus         6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   85 (187)
                      ....+...+....++.+|||++||+|..++++++..  ..+|+++|.++++++.+++|++..+..++++++++|+.+.++
T Consensus        28 vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srG--a~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~  105 (182)
T d2fhpa1          28 VKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRG--MDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE  105 (182)
T ss_dssp             HHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEcccccccccceeeecc--hhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhh
Confidence            344555555556688999999999999999988864  358999999999999999999998888889999999999887


Q ss_pred             HHhhcccCCCceeEEEEeCC--CcccHHHHHHHH--hccCCCeEEEEe
Q 029803           86 QLLKYSENEGSFDYAFVDAD--KDNYCNYHERLM--KLLKVGGIAVYD  129 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~--~~L~~gG~lv~~  129 (187)
                      .+...   ..+||+||+|+.  ...+...++.+.  .+|+++|+++++
T Consensus       106 ~~~~~---~~~fDlIflDPPY~~~~~~~~l~~i~~~~~L~~~giIi~E  150 (182)
T d2fhpa1         106 QFYEE---KLQFDLVLLDPPYAKQEIVSQLEKMLERQLLTNEAVIVCE  150 (182)
T ss_dssp             HHHHT---TCCEEEEEECCCGGGCCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             hhccc---CCCcceEEechhhhhhHHHHHHHHHHHCCCCCCCEEEEEE
Confidence            76433   568999999984  344667777775  479999999985

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.3e-16  Score=117.86  Aligned_cols=118  Identities=19%  Similarity=0.177  Sum_probs=90.7

Q ss_pred             HHHHHHHH--HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            9 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         9 ~ll~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      +++..++.  ..++.+|||||||+|.++..+++..  ..+++++|+++.+++.|+++....+  .++.++.+++......
T Consensus        41 ~~~~~la~~~~~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~  116 (229)
T d1zx0a1          41 PYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPT  116 (229)
T ss_dssp             HHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGG
T ss_pred             HHHHHHHHhhccCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccc
Confidence            34444443  2467799999999999999999863  3689999999999999999987654  4588889998776554


Q ss_pred             HhhcccCCCceeEEEEeCCC--------cccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           87 LLKYSENEGSFDYAFVDADK--------DNYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~~--------~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                      +     ..++||.|+.|...        .....+++++.++|||||++++.+....+
T Consensus       117 ~-----~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~~~~~~  168 (229)
T d1zx0a1         117 L-----PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTSWG  168 (229)
T ss_dssp             S-----CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHHHHH
T ss_pred             c-----ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEecCCcc
Confidence            3     35799999988532        22456889999999999999986655433

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.66  E-value=9.8e-17  Score=115.11  Aligned_cols=121  Identities=9%  Similarity=-0.016  Sum_probs=91.7

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC-----------CC
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV-----------DH   71 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-----------~~   71 (187)
                      +++...+++..| ...++.+|||+|||+|..+.+||+.   +.+|+++|+|+.+++.|+++.+..+.           ..
T Consensus         5 ~~~~~~~~~~~l-~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~   80 (201)
T d1pjza_           5 VNKDLQQYWSSL-NVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAP   80 (201)
T ss_dssp             STHHHHHHHHHH-CCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECS
T ss_pred             HHHHHHHHHHHc-CCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhccccchhhhhhhhhcccc
Confidence            456666666665 4668889999999999999999986   78999999999999999998754332           13


Q ss_pred             cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           72 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        72 ~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ..+++.+|..+..+..      ...||+|+.....     ......++.+.+.|||||.+++....+
T Consensus        81 ~~~~~~~d~~~l~~~~------~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~  141 (201)
T d1pjza_          81 GIEIWCGDFFALTARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEY  141 (201)
T ss_dssp             SSEEEEECCSSSTHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESS
T ss_pred             ccceeccccccccccc------ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccc
Confidence            3578888876643322      2689999886432     235678999999999999887754443

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=1.1e-15  Score=117.95  Aligned_cols=113  Identities=22%  Similarity=0.328  Sum_probs=93.2

Q ss_pred             HHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           13 MLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        13 ~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .+....++++|||++||+|..++.+|..   ..+|+++|.++.+++.+++|++.+++. +++++++|+.+.+..+...  
T Consensus       139 ~~~~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~-~~~~i~~d~~~~~~~~~~~--  212 (318)
T d1wxxa2         139 LYMERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKE--  212 (318)
T ss_dssp             HHGGGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHT--
T ss_pred             HHHHHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCC-CcceeeccHHHHhhhhHhh--
Confidence            3445568899999999999999998864   569999999999999999999999986 5999999999987766433  


Q ss_pred             CCCceeEEEEeCCC------------cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           93 NEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        93 ~~~~~D~i~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                       .++||+|++|...            ..+..++..+.++|+|||+|++....
T Consensus       213 -~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         213 -GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             -TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             -hcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence             5799999999632            12446778888999999999986443

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.65  E-value=2.9e-16  Score=113.37  Aligned_cols=105  Identities=17%  Similarity=0.211  Sum_probs=87.6

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ++..++.+|||||||+|..+.++++.   +.+|+++|+++.+++.++++....++. ++++...|..+..        ..
T Consensus        26 ~~~~~~grvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~-~~~~~~~d~~~~~--------~~   93 (198)
T d2i6ga1          26 AKVVAPGRTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLD-NLQTDLVDLNTLT--------FD   93 (198)
T ss_dssp             HTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEECCTTTCC--------CC
T ss_pred             cccCCCCcEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhcccc-chhhhheeccccc--------cc
Confidence            35567889999999999999999986   569999999999999999999988876 5899999976542        24


Q ss_pred             CceeEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           95 GSFDYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        95 ~~~D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ++||+|++...     ......+++++.++|+|||++++...
T Consensus        94 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1          94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             CCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            78999998752     34456799999999999999988543

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=3e-16  Score=114.88  Aligned_cols=104  Identities=14%  Similarity=0.171  Sum_probs=83.8

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..+..+|||||||+|..+..+++.   +.+|+++|+|+++++.|++++...+.  .+..+++|+.+. +      ...++
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~--~~~~~~~d~~~l-~------~~~~~  102 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDARKL-S------FEDKT  102 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEECCTTSC-C------SCTTC
T ss_pred             cCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc--cccccccccccc-c------ccCcC
Confidence            356679999999999999999974   67999999999999999999887663  467888888763 1      12579


Q ss_pred             eeEEEEeCCCc-----ccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           97 FDYAFVDADKD-----NYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~~~~-----~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ||+|++.....     +...+++++.++|||||.+++....
T Consensus       103 fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         103 FDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            99999875322     3456899999999999999886543

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.65  E-value=8.9e-16  Score=111.27  Aligned_cols=103  Identities=15%  Similarity=0.294  Sum_probs=87.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      +...|||||||+|.+++.+|+..| +..++++|+++.++..+.+++...++. ++.++++|+..+...+     ..+++|
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p-~~~~iGiD~~~~~i~~a~~~~~~~~l~-Nv~~~~~Da~~l~~~~-----~~~~~d  101 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNP-DINYIGIELFKSVIVTAVQKVKDSEAQ-NVKLLNIDADTLTDVF-----EPGEVK  101 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCT-TSEEEEECSCHHHHHHHHHHHHHSCCS-SEEEECCCGGGHHHHC-----CTTSCC
T ss_pred             CCceEEEEEecCcHHHHHHHHhCC-CCcEEEeecchHHHHHHHHHHHHHhcc-Cchhcccchhhhhccc-----Cchhhh
Confidence            345799999999999999999987 899999999999999999999999986 6999999998766543     357899


Q ss_pred             EEEEeCCC---cc--------cHHHHHHHHhccCCCeEEEE
Q 029803           99 YAFVDADK---DN--------YCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        99 ~i~~d~~~---~~--------~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|++....   ..        ...+++.+.+.|||||.|.+
T Consensus       102 ~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i  142 (204)
T d2fcaa1         102 RVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHF  142 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEE
T ss_pred             ccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEE
Confidence            99876422   11        25799999999999999977

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.65  E-value=2.7e-16  Score=114.77  Aligned_cols=112  Identities=19%  Similarity=0.278  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      |.....+-.++...++.+|||||||+||.+..++...  +++|+++|.+++.++.+++++...+.. ++.++++|..+..
T Consensus        64 P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~~-nv~~~~gd~~~g~  140 (215)
T d1jg1a_          64 PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDGSKGF  140 (215)
T ss_dssp             HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGCC
T ss_pred             hhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCCc-eeEEEECccccCC
Confidence            4443444445678899999999999999999998764  468999999999999999999999875 6999999987643


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.       ..+||.|++.+.....+..   +.+.|++||.+++.
T Consensus       141 ~~-------~~pfD~Iiv~~a~~~ip~~---l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         141 PP-------KAPYDVIIVTAGAPKIPEP---LIEQLKIGGKLIIP  175 (215)
T ss_dssp             GG-------GCCEEEEEECSBBSSCCHH---HHHTEEEEEEEEEE
T ss_pred             cc-------cCcceeEEeecccccCCHH---HHHhcCCCCEEEEE
Confidence            33       4899999998766554433   45789999999973

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.65  E-value=2.7e-16  Score=115.49  Aligned_cols=109  Identities=23%  Similarity=0.304  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      |.....+-..+...++.+|||||||+|+.+..+++.   .++|+++|.+++.++.|++++...   .+++++++|.....
T Consensus        56 p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l---~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g~  129 (224)
T d1vbfa_          56 LNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI---VDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLGY  129 (224)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGCC
T ss_pred             hhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHH---hcccccccccHHHHHHHHHHHhcc---cccccccCchhhcc
Confidence            333333444557889999999999999999999986   469999999999999999987643   47999999986643


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.       .++||.|++.+..+..+   +.+++.|+|||.|++-
T Consensus       130 ~~-------~~pfD~Iiv~~a~~~ip---~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         130 EE-------EKPYDRVVVWATAPTLL---CKPYEQLKEGGIMILP  164 (224)
T ss_dssp             GG-------GCCEEEEEESSBBSSCC---HHHHHTEEEEEEEEEE
T ss_pred             hh-------hhhHHHHHhhcchhhhh---HHHHHhcCCCCEEEEE
Confidence            32       37899999987655544   3456889999999883

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=5.7e-17  Score=119.18  Aligned_cols=115  Identities=16%  Similarity=0.204  Sum_probs=89.6

Q ss_pred             cHHHHHHHHHHH-HHcCCCEEEEEcccccHHHHHHHhhCCC-----CCEEEEEeCCcchHHHHHHHHHhcCC----CCcE
Q 029803            4 LTIHGQLMAMLL-RLVNAKKTIEIGVFTGYSLLLTALTIPE-----DGQITAIDVNRETYEIGLPIIKKAGV----DHKI   73 (187)
Q Consensus         4 ~~~~~~ll~~l~-~~~~~~~vLeiG~g~G~~~~~la~~~~~-----~~~v~~iD~~~~~~~~a~~~~~~~~~----~~~~   73 (187)
                      ...++.+++.|. ...++.+|||||||+||.+..+++.+.+     ..+|+++|.+++.++.+++++...+.    ..++
T Consensus        64 P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv  143 (223)
T d1r18a_          64 PHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL  143 (223)
T ss_dssp             HHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred             hhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEE
Confidence            345667777664 5678899999999999999999876532     35999999999999999998765432    1369


Q ss_pred             EEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           74 NFIESEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        74 ~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+.++|..+..+.       ..+||.|++.+.....+.   .+.+.|++||.+++
T Consensus       144 ~~~~~d~~~~~~~-------~~~fD~Iiv~~a~~~~p~---~l~~~Lk~gG~lV~  188 (223)
T d1r18a_         144 LIVEGDGRKGYPP-------NAPYNAIHVGAAAPDTPT---ELINQLASGGRLIV  188 (223)
T ss_dssp             EEEESCGGGCCGG-------GCSEEEEEECSCBSSCCH---HHHHTEEEEEEEEE
T ss_pred             EEEeccccccccc-------ccceeeEEEEeechhchH---HHHHhcCCCcEEEE
Confidence            9999998764332       378999999987665543   35689999999987

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.63  E-value=1.4e-14  Score=111.55  Aligned_cols=110  Identities=11%  Similarity=0.211  Sum_probs=92.8

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ..++++|||++||+|..++.++..-  ..+|+++|+++.+++.+++|++.+++. .+++++++|+.+.++.+...   .+
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~g--a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~---~~  216 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGG--AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRH---HL  216 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTT--BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHT---TC
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCC--CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhh---cC
Confidence            5678999999999999999887642  358999999999999999999999985 57999999999998876544   57


Q ss_pred             ceeEEEEeCCC------------cccHHHHHHHHhccCCCeEEEEeCC
Q 029803           96 SFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        96 ~~D~i~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +||+|++|+..            ..+.++++.+.++|+|||+|++...
T Consensus       217 ~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         217 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             CCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            99999999642            2356788889999999999998543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.62  E-value=4.7e-16  Score=116.31  Aligned_cols=105  Identities=12%  Similarity=0.104  Sum_probs=84.2

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++++|||+|||+|..+..+++.-  ..+|+|+|+|+++++.|+++....+...++.+.++|+.....      ...++
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~--~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~------~~~~~   93 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAG--IGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM------DLGKE   93 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHT--CSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC------CCSSC
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcC--CCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcc------ccccc
Confidence            3567899999999999988888752  368999999999999999998887777789999999854211      12468


Q ss_pred             eeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ||+|++.....       ....+++++.++|+|||++++.
T Consensus        94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            99999875322       2346889999999999999874

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.2e-15  Score=115.06  Aligned_cols=116  Identities=18%  Similarity=0.216  Sum_probs=93.6

Q ss_pred             cHHHHHHHHHHHHH--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            4 LTIHGQLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         4 ~~~~~~ll~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      .|++..++......  .++.+|||+|||+|..++.++...| +.+|+++|+++.+++.|++|+..+++. +++++++|..
T Consensus        91 RpeTE~lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p-~~~v~avDis~~Al~~A~~Na~~~~~~-~v~~~~~d~~  168 (274)
T d2b3ta1          91 RPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASERP-DCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWF  168 (274)
T ss_dssp             CTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCT-TSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTT
T ss_pred             ccchhhhhhhHhhhhcccccceeeeehhhhHHHHHHHhhCC-cceeeeccchhHHHhHHHHHHHHhCcc-cceeeecccc
Confidence            35666666665553  3456899999999999999999987 899999999999999999999999985 6999999987


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCC----------------------------cccHHHHHHHHhccCCCeEEEEe
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDADK----------------------------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~~----------------------------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.++        .++||+|++++..                            ..+..+++++.++|+|||.+++.
T Consensus       169 ~~~~--------~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lE  236 (274)
T d2b3ta1         169 SALA--------GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE  236 (274)
T ss_dssp             GGGT--------TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cccC--------CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEE
Confidence            6432        3699999987421                            11234677778999999999995

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.62  E-value=1.8e-14  Score=109.98  Aligned_cols=110  Identities=15%  Similarity=0.221  Sum_probs=88.7

Q ss_pred             HHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC-cEEEEEcchHHHHHHHhhccc
Q 029803           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      +....++++|||++||+|..++.++..   +++|++||.++.+++.|++|++.+++.+ +++++++|+.+++......  
T Consensus       127 ~~~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~--  201 (309)
T d2igta1         127 VETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR--  201 (309)
T ss_dssp             HHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH--
T ss_pred             HhhccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhc--
Confidence            444567899999999999999998875   5699999999999999999999988874 6999999999988776543  


Q ss_pred             CCCceeEEEEeCCC-------------cccHHHHHHHHhccCCCeEEEEe
Q 029803           93 NEGSFDYAFVDADK-------------DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~~~-------------~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       .++||+|++|+..             ..+...++.+.++|+|||.+++.
T Consensus       202 -~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~  250 (309)
T d2igta1         202 -GSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL  250 (309)
T ss_dssp             -TCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred             -CCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence             5799999999631             11234556677899999865543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.8e-16  Score=116.52  Aligned_cols=107  Identities=12%  Similarity=0.155  Sum_probs=85.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..+..+|||||||+|..+..++...  ..+|+++|+++++++.|++++...+.. +++++++|+.++.       ...++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~~-~~~f~~~d~~~~~-------~~~~~  127 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKR-VRNYFCCGLQDFT-------PEPDS  127 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGG-EEEEEECCGGGCC-------CCSSC
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhcccccccccccc-ccccccccccccc-------ccccc
Confidence            4566799999999999998887654  358999999999999999998876654 5899999997742       12579


Q ss_pred             eeEEEEeCCCcc-----cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           97 FDYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        97 ~D~i~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ||+|++.....+     ...+++++.+.|+|||.+++.+...
T Consensus       128 fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~  169 (222)
T d2ex4a1         128 YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMA  169 (222)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred             ccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEccc
Confidence            999998754322     3468999999999999999866543

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.62  E-value=9.1e-16  Score=114.86  Aligned_cols=105  Identities=14%  Similarity=0.183  Sum_probs=88.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..+.++|||||||+|..+..+++..| +.+++++|+ +++++.+++++...++.++++++.+|..+.         ...+
T Consensus        78 ~~~~~~VLDvGcG~G~~~~~la~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~---------~~~~  146 (253)
T d1tw3a2          78 WTNVRHVLDVGGGKGGFAAAIARRAP-HVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP---------LPRK  146 (253)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC---------CSSC
T ss_pred             CccCCEEEEeCCCCCHHHHHHHHhcc-eeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh---------cccc
Confidence            45678999999999999999999987 899999998 789999999999999989999999998642         1367


Q ss_pred             eeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           97 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ||+|++...-     +....+++++.+.|||||.+++.+..
T Consensus       147 ~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~  187 (253)
T d1tw3a2         147 ADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD  187 (253)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEecc
Confidence            9999987532     22346799999999999999887654

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=4.1e-15  Score=113.38  Aligned_cols=117  Identities=15%  Similarity=0.186  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC---CcEEEEEcchHHH
Q 029803            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD---HKINFIESEALSV   83 (187)
Q Consensus         7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~---~~~~~~~~d~~~~   83 (187)
                      ..+++..+++..++++|||+|||+|..+..+++.   +.+|+++|+|+++++.|+++....+..   ....+...+....
T Consensus        44 ~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (292)
T d1xvaa_          44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTL  120 (292)
T ss_dssp             HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGH
T ss_pred             HHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccc
Confidence            3455666667777889999999999999999985   579999999999999999998776543   2344556666543


Q ss_pred             HHHHhhcccCCCceeEEEEeCC-----------CcccHHHHHHHHhccCCCeEEEEeC
Q 029803           84 LDQLLKYSENEGSFDYAFVDAD-----------KDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~-----------~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      -..+    ...++||+|++...           ......+++++.++|||||+++++.
T Consensus       121 ~~~~----~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  174 (292)
T d1xvaa_         121 DKDV----PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDH  174 (292)
T ss_dssp             HHHS----CCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             cccc----CCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEee
Confidence            3222    12478999997532           1234568999999999999999953

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.60  E-value=9e-16  Score=112.90  Aligned_cols=104  Identities=15%  Similarity=0.171  Sum_probs=83.6

Q ss_pred             HHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803           10 LMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLK   89 (187)
Q Consensus        10 ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   89 (187)
                      .+..+....++.+|||||||+|..+..++..   +.+|+++|+++++++.|+++.     ..++++++++..+..     
T Consensus        11 ~~~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~-----~~~~~~~~~~~~~~~-----   77 (225)
T d2p7ia1          11 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRL-----KDGITYIHSRFEDAQ-----   77 (225)
T ss_dssp             HHHHHGGGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHS-----CSCEEEEESCGGGCC-----
T ss_pred             HHHHhhhhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhccc-----ccccccccccccccc-----
Confidence            3455566778999999999999999998875   458999999999999999774     246999999986531     


Q ss_pred             cccCCCceeEEEEeCC---CcccHHHHHHHH-hccCCCeEEEEe
Q 029803           90 YSENEGSFDYAFVDAD---KDNYCNYHERLM-KLLKVGGIAVYD  129 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~---~~~~~~~~~~~~-~~L~~gG~lv~~  129 (187)
                         .+++||+|++...   ..+...+++++. ++|+|||.+++.
T Consensus        78 ---~~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          78 ---LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             ---CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ---cccccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence               1478999998753   345667788887 789999999985

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.7e-15  Score=111.67  Aligned_cols=121  Identities=8%  Similarity=0.019  Sum_probs=93.0

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC---------------
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---------------   68 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---------------   68 (187)
                      ++...+.+..+....++.+|||+|||.|..+.+||+.   +.+|+++|+|+.+++.++++....+               
T Consensus        30 ~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~  106 (229)
T d2bzga1          30 HQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFK  106 (229)
T ss_dssp             CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEE
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceee
Confidence            3445556666666778889999999999999999985   6799999999999999998765321               


Q ss_pred             -CCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           69 -VDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        69 -~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                       ...+++++++|..+..+.      ..+.||+|+...     .+.....+++++.++|+|||.+++....+
T Consensus       107 ~~~~~v~~~~~d~~~l~~~------~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~  171 (229)
T d2bzga1         107 SSSGNISLYCCSIFDLPRT------NIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSY  171 (229)
T ss_dssp             ETTSSEEEEESCGGGGGGS------CCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEEC
T ss_pred             ecCCcEEEEEcchhhcccc------ccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEccc
Confidence             124688999998765332      257899998653     23456789999999999999877754443

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.59  E-value=1.9e-15  Score=109.94  Aligned_cols=106  Identities=17%  Similarity=0.161  Sum_probs=85.5

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|+.+..++...+ +++|+++|+++++++.++++.+..+   ++.++.+|+.......    .....
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~~---ni~~i~~d~~~~~~~~----~~~~~  125 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRERN---NIIPLLFDASKPWKYS----GIVEK  125 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHCS---SEEEECSCTTCGGGTT----TTCCC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhccC---CceEEEeeccCccccc----cccce
Confidence            56789999999999999999999887 6899999999999999999987754   6899999986531111    12356


Q ss_pred             eeEEEEeCC-CcccHHHHHHHHhccCCCeEEEEeC
Q 029803           97 FDYAFVDAD-KDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        97 ~D~i~~d~~-~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +|+|+.+.. ......+++++.+.|||||.+++.+
T Consensus       126 vd~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         126 VDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            888888753 4556678999999999999998753

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=1.5e-14  Score=102.03  Aligned_cols=114  Identities=14%  Similarity=0.169  Sum_probs=82.2

Q ss_pred             HHHHHHHHH-HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            8 GQLMAMLLR-LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         8 ~~ll~~l~~-~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      +.+...+.+ ..++.+|||+|||+|..+++++..   +++++++|.++++++.+++|++.+++..++  ...++..++..
T Consensus        29 e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v--~~~~~d~~~~~  103 (171)
T d1ws6a1          29 KALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGARV--VALPVEVFLPE  103 (171)
T ss_dssp             HHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCCEE--ECSCHHHHHHH
T ss_pred             HHHHHHhhccccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhccccce--eeeehhccccc
Confidence            344444443 357889999999999999987775   568999999999999999999999987654  44454443332


Q ss_pred             HhhcccCCCceeEEEEeCCC-cccHHHHHHHH--hccCCCeEEEEe
Q 029803           87 LLKYSENEGSFDYAFVDADK-DNYCNYHERLM--KLLKVGGIAVYD  129 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~~-~~~~~~~~~~~--~~L~~gG~lv~~  129 (187)
                      ...   ..++||+||+|+.. ......+..+.  .+|+|||+++++
T Consensus       104 ~~~---~~~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         104 AKA---QGERFTVAFMAPPYAMDLAALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             HHH---TTCCEEEEEECCCTTSCTTHHHHHHHHHTCEEEEEEEEEE
T ss_pred             ccc---cCCccceeEEccccccCHHHHHHHHHHcCCcCCCeEEEEE
Confidence            221   25789999999742 23334444443  589999999985

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.58  E-value=1.8e-15  Score=113.50  Aligned_cols=105  Identities=15%  Similarity=0.146  Sum_probs=89.2

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..++.+|+..  .++|+++|++|.+++.+++|++.+++.++++++++|+.++.+        .+.
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~--~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~--------~~~  174 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYG--KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG--------ENI  174 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHT--CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC--------CSC
T ss_pred             cCCccEEEECcceEcHHHHHHHHhC--CcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc--------CCC
Confidence            4678999999999999999999863  469999999999999999999999999999999999976522        468


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ||.|+++..+ ....+++.+.++|++||+|.+++..
T Consensus       175 ~D~Ii~~~p~-~~~~~l~~a~~~l~~gG~lh~~~~~  209 (260)
T d2frna1         175 ADRILMGYVV-RTHEFIPKALSIAKDGAIIHYHNTV  209 (260)
T ss_dssp             EEEEEECCCS-SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCEEEECCCC-chHHHHHHHHhhcCCCCEEEEEecc
Confidence            9999997533 4456788899999999999776443

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=2.1e-15  Score=111.64  Aligned_cols=105  Identities=20%  Similarity=0.254  Sum_probs=79.8

Q ss_pred             HHHHHHHH--HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            9 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         9 ~ll~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      +++..++.  ..++.+|||+|||+|..+..+++.   +.+|+++|+++++++.|+++.    .   ..++.+++.+. + 
T Consensus        30 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~~----~---~~~~~~~~~~l-~-   97 (246)
T d2avna1          30 RLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKG----V---KNVVEAKAEDL-P-   97 (246)
T ss_dssp             HHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHT----C---SCEEECCTTSC-C-
T ss_pred             HHHHHHHHHhcCCCCEEEEECCCCchhccccccc---ceEEEEeeccccccccccccc----c---ccccccccccc-c-
Confidence            44444433  346689999999999999999875   679999999999999999863    1   12567777653 1 


Q ss_pred             HhhcccCCCceeEEEEeCC----CcccHHHHHHHHhccCCCeEEEEeC
Q 029803           87 LLKYSENEGSFDYAFVDAD----KDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~----~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                           ...++||+|++-..    ..+...+++++.++|||||+++++.
T Consensus        98 -----~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1          98 -----FPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             -----SCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -----cccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence                 13589999997532    3466778999999999999999864

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.57  E-value=1.9e-15  Score=113.14  Aligned_cols=104  Identities=8%  Similarity=0.063  Sum_probs=82.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .+..+|||+|||+|..+..++....  .+|+++|+++.+++.|++++..   ..+++++++++.++-       ...++|
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~---~~~~~~~~~d~~~~~-------~~~~~f  159 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAG---MPVGKFILASMETAT-------LPPNTY  159 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTT---SSEEEEEESCGGGCC-------CCSSCE
T ss_pred             CCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhccccc---cccceeEEccccccc-------cCCCcc
Confidence            4667999999999999998876542  4899999999999999988643   245889999987641       125789


Q ss_pred             eEEEEeCCCcc-----cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           98 DYAFVDADKDN-----YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        98 D~i~~d~~~~~-----~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      |+|++.....+     ...+++++.+.|+|||++++.+...
T Consensus       160 D~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~  200 (254)
T d1xtpa_         160 DLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS  200 (254)
T ss_dssp             EEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred             ceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCC
Confidence            99999864322     3467999999999999999976543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=3.1e-14  Score=101.41  Aligned_cols=113  Identities=15%  Similarity=0.102  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHH
Q 029803            8 GQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQL   87 (187)
Q Consensus         8 ~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   87 (187)
                      ..+...+-+...+.+|||++||+|..++++++..  ..+|+.+|.++.+++.+++|++..+.. +.+++.+|+.+++.. 
T Consensus        32 e~lfn~l~~~~~~~~vLDlfaGsG~~giealsrG--a~~v~~VE~~~~a~~~~k~N~~~~~~~-~~~ii~~d~~~~l~~-  107 (183)
T d2fpoa1          32 ETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKAG-NARVVNSNAMSFLAQ-  107 (183)
T ss_dssp             HHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCC-SEEEECSCHHHHHSS-
T ss_pred             HHHHhhhhcccchhhhhhhhccccceeeeEEecC--cceeEEEEEeechhhHHHHHHhhcccc-ceeeeeecccccccc-
Confidence            4555555556788999999999999999988753  358999999999999999999987765 589999999887654 


Q ss_pred             hhcccCCCceeEEEEeCCC--cccHHHHHHHH--hccCCCeEEEEe
Q 029803           88 LKYSENEGSFDYAFVDADK--DNYCNYHERLM--KLLKVGGIAVYD  129 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~~~--~~~~~~~~~~~--~~L~~gG~lv~~  129 (187)
                           ...+||+||+|+..  ..+...++.+.  .+|+++|+++++
T Consensus       108 -----~~~~fDlIf~DPPY~~~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         108 -----KGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             -----CCCCEEEEEECCSSSTTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             -----cccccCEEEEcCccccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence                 25789999999753  23556666665  479999999985

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.56  E-value=1.4e-14  Score=104.87  Aligned_cols=103  Identities=17%  Similarity=0.299  Sum_probs=86.2

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ....|||||||+|.++..+|+..| +..++++|+++.++..|.+++...+++ ++.++++|+.++...+     ...++|
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p-~~~~iGid~~~~~v~~a~~~~~~~~l~-Ni~~~~~da~~l~~~~-----~~~~~~  103 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVP-NIKLLWVDGSDLTDYF-----EDGEID  103 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCS-SEEEEECCSSCGGGTS-----CTTCCS
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCC-CCceEEEeccHHHHHHHHHhhhhhccc-cceeeecCHHHHhhhc-----cCCcee
Confidence            345799999999999999999987 899999999999999999999999986 5999999997754332     357899


Q ss_pred             EEEEeC---CCcc--------cHHHHHHHHhccCCCeEEEE
Q 029803           99 YAFVDA---DKDN--------YCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        99 ~i~~d~---~~~~--------~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .|++..   ++..        ...+++.+.+.|+|||.|.+
T Consensus       104 ~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i  144 (204)
T d1yzha1         104 RLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHF  144 (204)
T ss_dssp             EEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEE
T ss_pred             hhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEE
Confidence            998764   2211        26789999999999999977

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.56  E-value=2.4e-14  Score=109.84  Aligned_cols=107  Identities=15%  Similarity=0.181  Sum_probs=88.9

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC----CCCcEEEEEcchHHHHHHHhhcc
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG----VDHKINFIESEALSVLDQLLKYS   91 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~   91 (187)
                      ...+|++||.||.|.|..+.++++..+ ..+|+++|++|+.++.+++++...+    -.++++++.+|+.+++...    
T Consensus        74 ~~~~pk~VLiiG~G~G~~~~~ll~~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~----  148 (312)
T d1uira_          74 THPEPKRVLIVGGGEGATLREVLKHPT-VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT----  148 (312)
T ss_dssp             HSSCCCEEEEEECTTSHHHHHHTTSTT-CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC----
T ss_pred             hCCCcceEEEeCCCchHHHHHHHhcCC-cceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc----
Confidence            356889999999999999999987644 7899999999999999999985421    2468999999999988763    


Q ss_pred             cCCCceeEEEEeCCCc----------ccHHHHHHHHhccCCCeEEEEe
Q 029803           92 ENEGSFDYAFVDADKD----------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~----------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                        ..+||+|++|...+          ...++++.+.+.|+|||++++.
T Consensus       149 --~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~  194 (312)
T d1uira_         149 --EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQ  194 (312)
T ss_dssp             --CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEE
T ss_pred             --CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEe
Confidence              57899999996311          1357999999999999999884

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.54  E-value=2.2e-14  Score=105.68  Aligned_cols=108  Identities=16%  Similarity=0.079  Sum_probs=82.4

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|+++..++...+ +++|+++|+++.+++.++++....   +++..+.+|+.......    .....
T Consensus        72 ikpG~~VLDlGcGsG~~~~~la~~~~-~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~----~~~~~  143 (230)
T d1g8sa_          72 IKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYA----NIVEK  143 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGT----TTCCC
T ss_pred             CCCCCEEEEeCEEcCHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCcccc----cccce
Confidence            56788999999999999999999876 789999999999999998876543   35778888876543221    11234


Q ss_pred             eeEEEEeCC-CcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           97 FDYAFVDAD-KDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~~-~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|+++.+.. ......+++++.+.|||||.+++.+..
T Consensus       144 v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~  180 (230)
T d1g8sa_         144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKA  180 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             eEEeeccccchHHHHHHHHHHHHhcccCceEEEEeec
Confidence            555666543 345667899999999999998886544

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=1.8e-14  Score=108.58  Aligned_cols=95  Identities=18%  Similarity=0.215  Sum_probs=78.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .++.+|||||||+|..+..+++..+ +.+++++|+++.+++.|+++.      .++++.++|+.+. +      ..+++|
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~-~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l-~------~~~~sf  148 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRL-P------FSDTSM  148 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSC-S------BCTTCE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCC-CCEEEEecchHhhhhhhhccc------ccccceeeehhhc-c------CCCCCE
Confidence            3667999999999999999999886 789999999999999998763      3588999998653 1      236899


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      |+|++......    ++++.++|||||++++..
T Consensus       149 D~v~~~~~~~~----~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         149 DAIIRIYAPCK----AEELARVVKPGGWVITAT  177 (268)
T ss_dssp             EEEEEESCCCC----HHHHHHHEEEEEEEEEEE
T ss_pred             EEEeecCCHHH----HHHHHHHhCCCcEEEEEe
Confidence            99998765544    467889999999999853

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=99.53  E-value=2.5e-14  Score=105.22  Aligned_cols=119  Identities=18%  Similarity=0.230  Sum_probs=88.6

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhC---CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTI---PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   79 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~---~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   79 (187)
                      ..|.-..+++.++...+|++|||||++.|+++++++..+   ..+++++++|+++........      ...+++++.+|
T Consensus        64 k~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~~I~~i~gD  137 (232)
T d2bm8a1          64 KDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGD  137 (232)
T ss_dssp             SCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECC
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------cccceeeeecc
Confidence            346667888999999999999999999999999887543   447899999998865443221      13579999999


Q ss_pred             hHH--HHHHHhhcccCCCceeEEEEeCCCcccHHHHH-HHHhccCCCeEEEEeCCC
Q 029803           80 ALS--VLDQLLKYSENEGSFDYAFVDADKDNYCNYHE-RLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        80 ~~~--~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~-~~~~~L~~gG~lv~~~~~  132 (187)
                      +.+  .+..+     ....+|+||+|+.+.......+ ...++|++||+++++|+.
T Consensus       138 s~~~~~~~~l-----~~~~~dlIfID~~H~~~~v~~~~~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         138 CSDLTTFEHL-----REMAHPLIFIDNAHANTFNIMKWAVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             SSCSGGGGGG-----SSSCSSEEEEESSCSSHHHHHHHHHHHTCCTTCEEEECSCH
T ss_pred             cccHHHHHHH-----HhcCCCEEEEcCCcchHHHHHHHHHhcccCcCCEEEEEcCC
Confidence            753  23332     2357899999987655443332 245899999999999875

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.53  E-value=1.4e-14  Score=108.46  Aligned_cols=105  Identities=15%  Similarity=0.165  Sum_probs=88.1

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..+.++|||||||+|..+..+++.+| +.+++++|+ |+.++.++++++..++.+++++..+|..+..         +.+
T Consensus        79 ~~~~~~vlDvG~G~G~~~~~l~~~~P-~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~---------p~~  147 (256)
T d1qzza2          79 WSAVRHVLDVGGGNGGMLAAIALRAP-HLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL---------PVT  147 (256)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC---------SCC
T ss_pred             CccCCEEEEECCCCCHHHHHHHHhhc-CcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc---------ccc
Confidence            35668999999999999999999998 899999998 8899999999999999899999999986521         357


Q ss_pred             eeEEEEeCCC-----cccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           97 FDYAFVDADK-----DNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~~~-----~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ||+|++...-     +....+++++.+.|+|||.+++.+..
T Consensus       148 ~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~  188 (256)
T d1qzza2         148 ADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA  188 (256)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             chhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence            9999887422     23456799999999999988876654

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.53  E-value=1.2e-14  Score=106.89  Aligned_cols=106  Identities=17%  Similarity=0.175  Sum_probs=84.7

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+|||+|||+|..+..++....++++|+++|+++.+++.++++++..+   ++..+..|+.......    .....
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~---~~~~i~~d~~~~~~~~----~~~~~  143 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERR---NIVPILGDATKPEEYR----ALVPK  143 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCT---TEEEEECCTTCGGGGT----TTCCC
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcC---CceEEEEECCCccccc----ccccc
Confidence            5578899999999999999999988768999999999999999999876543   4677777764421110    12468


Q ss_pred             eeEEEEeCCC-cccHHHHHHHHhccCCCeEEEEe
Q 029803           97 FDYAFVDADK-DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        97 ~D~i~~d~~~-~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +|+||+|... .....+++++.+.|||||.+++.
T Consensus       144 vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            9999998654 45567899999999999998874

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.6e-14  Score=106.73  Aligned_cols=110  Identities=11%  Similarity=0.052  Sum_probs=80.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC----C-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcE--EEEEcchHHHHHHHhhcc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI----P-EDGQITAIDVNRETYEIGLPIIKKAGVDHKI--NFIESEALSVLDQLLKYS   91 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~----~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~--~~~~~d~~~~~~~~~~~~   91 (187)
                      +..+|||||||+|..+..++..+    + ...+++++|+++.+++.+++++........+  .+...++.+....... .
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  118 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLE-K  118 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTT-S
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcc-c
Confidence            33479999999999988887653    2 1357899999999999999998765433344  4566666554332211 1


Q ss_pred             cCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEe
Q 029803           92 ENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        92 ~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...++||+|++...   .++...+++++.++|+|||++++.
T Consensus       119 ~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~  159 (280)
T d1jqea_         119 KELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLII  159 (280)
T ss_dssp             SSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEE
Confidence            24679999998753   345678999999999999998874

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.49  E-value=1.6e-13  Score=104.22  Aligned_cols=106  Identities=16%  Similarity=0.158  Sum_probs=88.0

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC---CCCcEEEEEcchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---VDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ...|++||-||.|.|..+.++++..+ ..+|+++|++|+.++.+++.+....   -.++++++.+|+.+++...      
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~------  159 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDS-VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKF------  159 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTT-CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGC------
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCC-CceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcC------
Confidence            56889999999999999999988654 6899999999999999999876422   1468999999999987653      


Q ss_pred             CCceeEEEEeCCCc--------ccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKD--------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~--------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++||+|++|...+        ...++++.+.+.|+|||+++..
T Consensus       160 ~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q  203 (295)
T d1inla_         160 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE  203 (295)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence            57899999996321        1367999999999999999985

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.47  E-value=9.8e-13  Score=99.21  Aligned_cols=106  Identities=15%  Similarity=0.218  Sum_probs=86.9

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc---------CCCCcEEEEEcchHHHHH
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---------GVDHKINFIESEALSVLD   85 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---------~~~~~~~~~~~d~~~~~~   85 (187)
                      ....+|++||.||.|.|..+..+++. + ..+|+.+|++|+.++.+++.+...         ...++++++.+|+..++.
T Consensus        68 ~~~~~p~~vLiiG~G~G~~~~~~l~~-~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~  145 (276)
T d1mjfa_          68 LAHPKPKRVLVIGGGDGGTVREVLQH-D-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK  145 (276)
T ss_dssp             HHSSCCCEEEEEECTTSHHHHHHTTS-C-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH
T ss_pred             hcCCCCceEEEecCCchHHHHHHHHh-C-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh
Confidence            34678899999999999999888874 4 469999999999999999876422         234689999999999876


Q ss_pred             HHhhcccCCCceeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEe
Q 029803           86 QLLKYSENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        86 ~~~~~~~~~~~~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .       .++||+|++|....       ...++++.+.+.|+|||++++.
T Consensus       146 ~-------~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q  189 (276)
T d1mjfa_         146 N-------NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ  189 (276)
T ss_dssp             H-------CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred             c-------cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence            5       47899999996321       1357899999999999999885

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.47  E-value=2.1e-14  Score=103.95  Aligned_cols=101  Identities=19%  Similarity=0.207  Sum_probs=78.3

Q ss_pred             HHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhc
Q 029803           11 MAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKY   90 (187)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~   90 (187)
                      +..+....+..+|||||||+|..+..++       +++++|+++.+++.++++        +++++++|+.+. +     
T Consensus        28 ~~~~~~~~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l-~-----   86 (208)
T d1vlma_          28 LQAVKCLLPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR--------GVFVLKGTAENL-P-----   86 (208)
T ss_dssp             HHHHHHHCCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT--------TCEEEECBTTBC-C-----
T ss_pred             HHHHHhhCCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc--------cccccccccccc-c-----
Confidence            3444556667789999999998876653       468999999999998863        488999998654 1     


Q ss_pred             ccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           91 SENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                       ..+++||+|++...   .++...+++++.++|+|||.+++.....
T Consensus        87 -~~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~  131 (208)
T d1vlma_          87 -LKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR  131 (208)
T ss_dssp             -SCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             -cccccccccccccccccccccccchhhhhhcCCCCceEEEEecCC
Confidence             12579999998753   3456778999999999999999876543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=2.6e-13  Score=104.97  Aligned_cols=105  Identities=16%  Similarity=0.168  Sum_probs=83.6

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ....++++|||||||+|..++.+|+..  ..+|+++|.++ ++..+++++...+..++++++++++.+..       ...
T Consensus        34 ~~~~~~~~VLDlGcGtG~ls~~aa~~G--a~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~-------~~~  103 (328)
T d1g6q1_          34 KDLFKDKIVLDVGCGTGILSMFAAKHG--AKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH-------LPF  103 (328)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHTC--CSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-------CSS
T ss_pred             cccCCcCEEEEeCCCCCHHHHHHHHhC--CCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc-------Ccc
Confidence            345689999999999999999888863  35999999986 77899999999999999999999987641       124


Q ss_pred             CceeEEEEeC------CCcccHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDA------DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~------~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++||+|++..      ........+....++|||||.++-+
T Consensus       104 ~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~iiP~  144 (328)
T d1g6q1_         104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPD  144 (328)
T ss_dssp             SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             cceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEEee
Confidence            7899999853      1233456677777999999998743

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.4e-13  Score=106.05  Aligned_cols=103  Identities=17%  Similarity=0.176  Sum_probs=83.0

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...++++|||||||+|..++.+|+..  ..+|+++|.++. ...+++++..+++.++++++++++.+.-       ...+
T Consensus        30 ~~~~~~~VLDiGcG~G~ls~~aa~~G--a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~-------~~~~   99 (316)
T d1oria_          30 HLFKDKVVLDVGSGTGILCMFAAKAG--ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVE-------LPVE   99 (316)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCC-------CSSS
T ss_pred             ccCCcCEEEEEecCCcHHHHHHHHhC--CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcc-------cccc
Confidence            35688999999999999999888863  358999999875 5778888888999999999999987641       1247


Q ss_pred             ceeEEEEeCC------CcccHHHHHHHHhccCCCeEEEE
Q 029803           96 SFDYAFVDAD------KDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        96 ~~D~i~~d~~------~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +||+|++...      ......++..+.++|+|||.++.
T Consensus       100 ~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~iiP  138 (316)
T d1oria_         100 KVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP  138 (316)
T ss_dssp             CEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEEe
Confidence            8999987631      23456788888899999999874

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.46  E-value=3.2e-13  Score=103.02  Aligned_cols=108  Identities=17%  Similarity=0.197  Sum_probs=87.1

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC---CCcEEEEEcchHHHHHHHhhcc
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV---DHKINFIESEALSVLDQLLKYS   91 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~~~~~~~~~d~~~~~~~~~~~~   91 (187)
                      .....|++||-||.|.|..+.++++..+ ..+|+++|++++.++.+++.+.....   .++++++.+|+.+++...    
T Consensus       102 ~~~~~pk~VLIiGgG~G~~~rellk~~~-v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~----  176 (312)
T d2b2ca1         102 FAHPDPKRVLIIGGGDGGILREVLKHES-VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH----  176 (312)
T ss_dssp             HHSSSCCEEEEESCTTSHHHHHHTTCTT-CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC----
T ss_pred             hcCCCCCeEEEeCCCchHHHHHHHHcCC-cceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC----
Confidence            3467889999999999999999988644 67999999999999999998754221   368999999999988753    


Q ss_pred             cCCCceeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEe
Q 029803           92 ENEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                        .++||+|++|...+       ...++++.+.+.|+|||+++..
T Consensus       177 --~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q  219 (312)
T d2b2ca1         177 --KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ  219 (312)
T ss_dssp             --TTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred             --CCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence              57899999996321       2356899999999999999986

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.45  E-value=6.1e-13  Score=100.16  Aligned_cols=106  Identities=17%  Similarity=0.205  Sum_probs=88.8

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-C--CCCcEEEEEcchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-G--VDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-~--~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ..+|++||-||.|.|..+.++++..+ ..+++.+|++|+.++.+++.+... +  ..++++++.+|+..++...      
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~------  145 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS------  145 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC------
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc------
Confidence            56889999999999999999987644 689999999999999999987532 1  2468999999999988752      


Q ss_pred             CCceeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++||+|++|...+       ...++++.+.+.|+|||+++..
T Consensus       146 ~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q  188 (274)
T d1iy9a_         146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ  188 (274)
T ss_dssp             CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence            57899999996321       2468999999999999999985

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.43  E-value=1.1e-12  Score=93.16  Aligned_cols=118  Identities=14%  Similarity=0.142  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC-cEEEEEcchHHHH
Q 029803            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH-KINFIESEALSVL   84 (187)
Q Consensus         6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~-~~~~~~~d~~~~~   84 (187)
                      ....+...+-......+|||+.||+|..+++.++.-  ..+|+.+|.+.+.+...++|++..+..+ ...+...|+.+.+
T Consensus        30 vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRG--A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l  107 (183)
T d2ifta1          30 VKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQ--AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL  107 (183)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT
T ss_pred             HHHHHHHHhhhhcccceEeecccCccceeeeeeeec--ceeeEEeecccchhhhHhhHHhhhcccccccccccccccccc
Confidence            345566666556688999999999999999999864  3599999999999999999999988754 5778888887765


Q ss_pred             HHHhhcccCCCceeEEEEeCCCc--ccHHHHHHHH--hccCCCeEEEEe
Q 029803           85 DQLLKYSENEGSFDYAFVDADKD--NYCNYHERLM--KLLKVGGIAVYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~~--~~L~~gG~lv~~  129 (187)
                      ...    ....+||+||+|+...  .+...++.+.  .+|+++|+++++
T Consensus       108 ~~~----~~~~~fDlIFlDPPY~~~~~~~~l~~l~~~~~L~~~~liiiE  152 (183)
T d2ifta1         108 KQP----QNQPHFDVVFLDPPFHFNLAEQAISLLCENNWLKPNALIYVE  152 (183)
T ss_dssp             TSC----CSSCCEEEEEECCCSSSCHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             ccc----ccCCcccEEEechhHhhhhHHHHHHHHHHhCCcCCCcEEEEE
Confidence            432    1245799999998543  3556666665  489999999996

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=1.2e-12  Score=98.16  Aligned_cols=118  Identities=17%  Similarity=0.191  Sum_probs=90.0

Q ss_pred             cHHHHHHHHHHHH---HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            4 LTIHGQLMAMLLR---LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         4 ~~~~~~ll~~l~~---~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      .|++..++.....   ..+..+++|+|||+|..++.++.. + +.+|+++|+++++++.|++|++.+++.+++.+..++.
T Consensus        92 RpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~-~-~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~  169 (271)
T d1nv8a_          92 RPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF-S-DAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEF  169 (271)
T ss_dssp             CTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH-S-SCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESST
T ss_pred             hhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhc-c-cceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccc
Confidence            3455555554443   446679999999999999998864 5 7899999999999999999999999998999999998


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCCC-------------c---------ccHHHHHH-HHhccCCCeEEEEe
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDADK-------------D---------NYCNYHER-LMKLLKVGGIAVYD  129 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~~-------------~---------~~~~~~~~-~~~~L~~gG~lv~~  129 (187)
                      .+.....      .++||+|++++..             +         +-..+++. +.++|+|||++++.
T Consensus       170 ~~~~~~~------~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E  235 (271)
T d1nv8a_         170 LEPFKEK------FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME  235 (271)
T ss_dssp             TGGGGGG------TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred             ccccccc------cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE
Confidence            7754432      4789999988420             0         00133433 34789999999985

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.2e-13  Score=100.57  Aligned_cols=107  Identities=14%  Similarity=0.182  Sum_probs=87.5

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc---CCCCcEEEEEcchHHHHHHHhhccc
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA---GVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      ....|++||-||.|.|..+..+++..+ ..+++.+|++|+.++.+++.+...   --.++++++.+|+..++...     
T Consensus        75 ~~~~pk~vLiiGgG~G~~~~~~l~~~~-~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~-----  148 (285)
T d2o07a1          75 SHPNPRKVLIIGGGDGGVLREVVKHPS-VESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN-----  148 (285)
T ss_dssp             TSSSCCEEEEEECTTSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC-----
T ss_pred             hCcCcCeEEEeCCCchHHHHHHHHcCC-cceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC-----
Confidence            356889999999999999999987654 689999999999999999987531   12478999999999988752     


Q ss_pred             CCCceeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEe
Q 029803           93 NEGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       .++||+|++|....       ...++++.+.+.|+|||++++.
T Consensus       149 -~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q  191 (285)
T d2o07a1         149 -QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ  191 (285)
T ss_dssp             -SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred             -CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence             57899999996321       1246899999999999999985

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8.2e-13  Score=102.07  Aligned_cols=111  Identities=12%  Similarity=0.088  Sum_probs=84.6

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-------CC-CCcEEEEEcchHHH-HHH
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-------GV-DHKINFIESEALSV-LDQ   86 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-------~~-~~~~~~~~~d~~~~-~~~   86 (187)
                      ...+..+|||+|||+|..+..+|...+ ..+++|+|+++.+++.|+++.+..       +. ..+++++++|+.+. ...
T Consensus       148 ~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~  226 (328)
T d1nw3a_         148 KMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE  226 (328)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHH
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccccc
Confidence            466788999999999999999998876 678999999999999998776542       22 24699999998753 111


Q ss_pred             HhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           87 LLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .      ....|+|++...  .+.....++++.+.|||||.||+...+.
T Consensus       227 ~------~~~advi~~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~~~  269 (328)
T d1nw3a_         227 R------IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFA  269 (328)
T ss_dssp             H------HHHCSEEEECCTTTCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             c------cCcceEEEEcceecchHHHHHHHHHHHhCCCCcEEEEecccC
Confidence            1      124688888642  2445667888999999999999865543

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.3e-13  Score=102.93  Aligned_cols=104  Identities=17%  Similarity=0.163  Sum_probs=80.2

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...++++|||||||+|..++.+|+..  ..+|+++|.++.+. .+++.....+..++++++++++.+...       ..+
T Consensus        32 ~~~~~~~VLDiGcG~G~lsl~aa~~G--a~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~-------~~~  101 (311)
T d2fyta1          32 HIFKDKVVLDVGCGTGILSMFAAKAG--AKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHL-------PVE  101 (311)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTT--CSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCC-------SCS
T ss_pred             ccCCcCEEEEECCCCCHHHHHHHHcC--CCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcC-------ccc
Confidence            35688999999999999999999863  35999999998765 567777788888899999999876411       247


Q ss_pred             ceeEEEEeCC-----C-cccHHHHHHHHhccCCCeEEEEe
Q 029803           96 SFDYAFVDAD-----K-DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d~~-----~-~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +||+|++..-     . .....++....++|+|||+++.+
T Consensus       102 ~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip~  141 (311)
T d2fyta1         102 KVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYPD  141 (311)
T ss_dssp             CEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEESC
T ss_pred             cceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEecc
Confidence            9999998631     1 22345566667899999999853

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.40  E-value=1.7e-12  Score=98.39  Aligned_cols=108  Identities=20%  Similarity=0.320  Sum_probs=89.0

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC---CCCcEEEEEcchHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG---VDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ..+|++||-||.|.|..+.++++..+ ..+++++|++++.++.+++.+....   -.++++++.+|+.+.+...     .
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~-~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~-----~  151 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHAS-IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----A  151 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTT-CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----C
T ss_pred             CCCCcceEEecCCchHHHHHHHhccc-ceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhc-----c
Confidence            46889999999999999999988654 6799999999999999999875321   2478999999999988653     2


Q ss_pred             CCceeEEEEeCCCc-------ccHHHHHHHHhccCCCeEEEEeC
Q 029803           94 EGSFDYAFVDADKD-------NYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        94 ~~~~D~i~~d~~~~-------~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .++||+|++|...+       ...++++.+.+.|+|||+++..-
T Consensus       152 ~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         152 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            35899999996321       13679999999999999999863

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=2.6e-12  Score=91.83  Aligned_cols=109  Identities=17%  Similarity=0.145  Sum_probs=86.7

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      ...++..+||++||+|..+..+++.++ +++|+++|.++++++.++++++..+  .++.+++++..+.-..+...  ..+
T Consensus        20 ~~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~~~~~~~~--~~~   94 (192)
T d1m6ya2          20 KPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREADFLLKTL--GIE   94 (192)
T ss_dssp             CCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGHHHHHHHT--TCS
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhHHHHHHHc--CCC
Confidence            456778999999999999999999987 7999999999999999999987654  57999999876542222111  247


Q ss_pred             ceeEEEEeCCCcc------------cHHHHHHHHhccCCCeEEEEe
Q 029803           96 SFDYAFVDADKDN------------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        96 ~~D~i~~d~~~~~------------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +||.|+.|...+.            ....+..+..+|+|||.+++-
T Consensus        95 ~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii  140 (192)
T d1m6ya2          95 KVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVI  140 (192)
T ss_dssp             CEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEE
T ss_pred             CcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeee
Confidence            9999999965433            235677778999999999874

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=3.7e-12  Score=100.41  Aligned_cols=111  Identities=13%  Similarity=0.205  Sum_probs=82.3

Q ss_pred             HHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC-------CC-CcEEE-EEcchHH--HH
Q 029803           16 RLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG-------VD-HKINF-IESEALS--VL   84 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~-------~~-~~~~~-~~~d~~~--~~   84 (187)
                      ...++.++||||||+|..++.+|...+ ..+++|||+++.+++.|+++.+..+       .. ....+ ..++..+  ..
T Consensus       213 ~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~  291 (406)
T d1u2za_         213 QLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRV  291 (406)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHH
T ss_pred             CCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccc
Confidence            467888999999999999999998876 5699999999999999998876532       11 22333 3444432  22


Q ss_pred             HHHhhcccCCCceeEEEEeC--CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           85 DQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~--~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      ...      ...+|+|++..  ..+.....++++.+.|||||.|+..+.+.
T Consensus       292 d~~------~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~~~~~  336 (406)
T d1u2za_         292 AEL------IPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLR  336 (406)
T ss_dssp             HHH------GGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred             ccc------cccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEecccC
Confidence            222      25689999864  23456778899999999999999877654

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.35  E-value=2.7e-11  Score=87.11  Aligned_cols=89  Identities=11%  Similarity=0.127  Sum_probs=69.5

Q ss_pred             CcHHHHHHHHHHHHH---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc
Q 029803            3 LLTIHGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE   79 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~---~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d   79 (187)
                      .++..+.-+..++..   .++++|||+|||+|..++.++.. + ..+|+++|+++.+++.+++|++..+.  +.+++.+|
T Consensus        27 Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~-g-~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d  102 (201)
T d1wy7a1          27 TPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLL-G-AKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGD  102 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHT-T-CSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESC
T ss_pred             CCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHc-C-CCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECc
Confidence            345555544444443   36789999999999999987764 2 35999999999999999999887764  48899999


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCC
Q 029803           80 ALSVLDQLLKYSENEGSFDYAFVDAD  105 (187)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~D~i~~d~~  105 (187)
                      +.+.          .++||+|++|+.
T Consensus       103 ~~~~----------~~~fD~Vi~nPP  118 (201)
T d1wy7a1         103 VSEF----------NSRVDIVIMNPP  118 (201)
T ss_dssp             GGGC----------CCCCSEEEECCC
T ss_pred             hhhh----------CCcCcEEEEcCc
Confidence            8653          478999999964

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.9e-13  Score=98.64  Aligned_cols=115  Identities=21%  Similarity=0.038  Sum_probs=75.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-------cch--HH-HHHHH-
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-------SEA--LS-VLDQL-   87 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-------~d~--~~-~~~~~-   87 (187)
                      ++.+|||||||+|..+..++...  ..+|+++|+++.+++.|+++++..+.........       +..  .. ..... 
T Consensus        51 ~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (257)
T d2a14a1          51 QGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR  128 (257)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence            56789999999998887776542  3479999999999999999988655321100000       000  00 00000 


Q ss_pred             ---------------hhcccCCCceeEEEEeCCC-------cccHHHHHHHHhccCCCeEEEEeCCCCCc
Q 029803           88 ---------------LKYSENEGSFDYAFVDADK-------DNYCNYHERLMKLLKVGGIAVYDNTLWGG  135 (187)
Q Consensus        88 ---------------~~~~~~~~~~D~i~~d~~~-------~~~~~~~~~~~~~L~~gG~lv~~~~~~~~  135 (187)
                                     .......++||+|++....       +.+..+++++.++|||||++++.+.....
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~  198 (257)
T d2a14a1         129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLP  198 (257)
T ss_dssp             HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCC
T ss_pred             hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccc
Confidence                           0000235689999886421       34567899999999999999998766433

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.1e-11  Score=90.51  Aligned_cols=83  Identities=17%  Similarity=0.276  Sum_probs=67.9

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH-HHHhhcccCCCce
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL-DQLLKYSENEGSF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~   97 (187)
                      +..++||||||+|..++.++...+ +.+++++|+++++++.|++|++.+++.+++.+++.+..+.+ ..+..  ...++|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~--~~~~~f  137 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE--ESEIIY  137 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT--CCSCCB
T ss_pred             ccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhh--cccCce
Confidence            446899999999999999999887 89999999999999999999999999999999987654322 11111  124689


Q ss_pred             eEEEEeC
Q 029803           98 DYAFVDA  104 (187)
Q Consensus        98 D~i~~d~  104 (187)
                      |+|++.+
T Consensus       138 D~ivsNP  144 (250)
T d2h00a1         138 DFCMCNP  144 (250)
T ss_dssp             SEEEECC
T ss_pred             eEEEecC
Confidence            9999874

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=9.4e-11  Score=88.54  Aligned_cols=159  Identities=18%  Similarity=0.169  Sum_probs=111.3

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      +....++...++...++.+|||++++.|.=+..++.... +++|+++|+++..+...+++++..+..+ +.....+....
T Consensus        87 QD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~-~~~i~a~d~~~~R~~~l~~~~~r~g~~~-~~~~~~~~~~~  164 (284)
T d1sqga2          87 QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAP-EAQVVAVDIDEQRLSRVYDNLKRLGMKA-TVKQGDGRYPS  164 (284)
T ss_dssp             CCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCT-TCEEEEEESSTTTHHHHHHHHHHTTCCC-EEEECCTTCTH
T ss_pred             ccccccccccccCccccceeEeccCccccchhhhhhhhh-hhhhhhhhcchhhhhhHhhhhhcccccc-eeeeccccccc
Confidence            344456666677778889999999999999999998765 6899999999999999999999999864 44554443322


Q ss_pred             HHHHhhcccCCCceeEEEEeCCCccc-------------------------HHHHHHHHhccCCCeEEEEeCCCCCcccc
Q 029803           84 LDQLLKYSENEGSFDYAFVDADKDNY-------------------------CNYHERLMKLLKVGGIAVYDNTLWGGTVA  138 (187)
Q Consensus        84 ~~~~~~~~~~~~~~D~i~~d~~~~~~-------------------------~~~~~~~~~~L~~gG~lv~~~~~~~~~~~  138 (187)
                      ...      ..+.||.|++|+..+..                         ..+++++.++|+|||+||.......-.  
T Consensus       165 ~~~------~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~--  236 (284)
T d1sqga2         165 QWC------GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPE--  236 (284)
T ss_dssp             HHH------TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGG--
T ss_pred             hhc------ccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchh--
Confidence            111      14689999999532110                         246788889999999999976664221  


Q ss_pred             CCCCCCCCCcccchHHHHHHHHHHhhcCCCeEE-----------Eeeec---CCceEEEEEcC
Q 029803          139 VPEEQVPDHFRGSSRQAILDLNRSLADDPRVQL-----------SHVAL---GDGITICRRIF  187 (187)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~lp~---~~G~~~~~~~~  187 (187)
                         +         -...++.|++.   +++++.           .++|.   .+|+-+|+-+|
T Consensus       237 ---E---------NE~vv~~~l~~---~~~~~~~~~~~~~~~~~~~~P~~~~~dGFF~A~l~K  284 (284)
T d1sqga2         237 ---E---------NSLQIKAFLQR---TADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK  284 (284)
T ss_dssp             ---G---------THHHHHHHHHH---CTTCEECSSBCSSSBSEEECCCTTSCCSEEEEEEEC
T ss_pred             ---h---------CHHHHHHHHHh---CCCcEEecCCCCCCCcEEECCCCCCcccEEEEEEEC
Confidence               1         12235666544   555543           23342   37888888765

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=3.6e-12  Score=95.50  Aligned_cols=113  Identities=15%  Similarity=0.021  Sum_probs=73.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCc--------------------------
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHK--------------------------   72 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~--------------------------   72 (187)
                      ++.++||+|||+|..++..+...  ..+|+++|+++.+++.+++++...+..-.                          
T Consensus        54 ~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T d2g72a1          54 SGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR  131 (263)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred             CCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence            57899999999997765444332  35899999999999999998865332100                          


Q ss_pred             ---EEEEEcchHHHHHHHhhcccCCCceeEEEEeCC-------CcccHHHHHHHHhccCCCeEEEEeCCCCC
Q 029803           73 ---INFIESEALSVLDQLLKYSENEGSFDYAFVDAD-------KDNYCNYHERLMKLLKVGGIAVYDNTLWG  134 (187)
Q Consensus        73 ---~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~-------~~~~~~~~~~~~~~L~~gG~lv~~~~~~~  134 (187)
                         ..+...|....-. +.......++||+|++...       ...+...++++.++|||||++++.+.+..
T Consensus       132 ~~~~~~~~~Dv~~~~~-~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~  202 (263)
T d2g72a1         132 ARVKRVLPIDVHQPQP-LGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEE  202 (263)
T ss_dssp             HHEEEEECCCTTSSST-TCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESC
T ss_pred             hhhhccccccccCCCc-cccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCC
Confidence               1122222211000 0000012357999987632       23567789999999999999999776543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.22  E-value=3.5e-11  Score=86.03  Aligned_cols=84  Identities=14%  Similarity=0.205  Sum_probs=64.1

Q ss_pred             cHHHHHHHHHHHHH---cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch
Q 029803            4 LTIHGQLMAMLLRL---VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA   80 (187)
Q Consensus         4 ~~~~~~ll~~l~~~---~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~   80 (187)
                      ++..+..+...+..   ..+++|||+|||+|..++.++...  ..+|+++|+++.+++.|++|+.      +++++++|+
T Consensus        30 ~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~g--a~~V~~vDid~~a~~~ar~N~~------~~~~~~~D~  101 (197)
T d1ne2a_          30 DASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLG--AESVTAFDIDPDAIETAKRNCG------GVNFMVADV  101 (197)
T ss_dssp             CHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTT--BSEEEEEESCHHHHHHHHHHCT------TSEEEECCG
T ss_pred             CHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcC--CCcccccccCHHHHHHHHHccc------cccEEEEeh
Confidence            34444444333333   368899999999999988777642  3589999999999999999852      578999998


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeCC
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDAD  105 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~~  105 (187)
                      .+.          +++||+|+++..
T Consensus       102 ~~l----------~~~fD~Vi~NPP  116 (197)
T d1ne2a_         102 SEI----------SGKYDTWIMNPP  116 (197)
T ss_dssp             GGC----------CCCEEEEEECCC
T ss_pred             hhc----------CCcceEEEeCcc
Confidence            642          578999999854

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.20  E-value=1.4e-10  Score=88.68  Aligned_cols=121  Identities=21%  Similarity=0.258  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      .....+...++...++.+|||+++|.|.=+..++......+.+++.|.++..+...++++++.+.. ++.+...|.... 
T Consensus       102 D~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~-~i~~~~~d~~~~-  179 (313)
T d1ixka_         102 EASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHI-  179 (313)
T ss_dssp             CHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGG-
T ss_pred             cccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhh-cccccccccccc-
Confidence            344556666667778899999999999999999988876789999999999999999999999986 477788887654 


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcc-------------------------cHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDN-------------------------YCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~-------------------------~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +..      ...||.|++|+..+.                         -...++++++++||||.||......
T Consensus       180 ~~~------~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl  247 (313)
T d1ixka_         180 GEL------NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  247 (313)
T ss_dssp             GGG------CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccc------cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence            221      578999999953211                         0246778889999999999876654

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=5.9e-11  Score=85.46  Aligned_cols=101  Identities=14%  Similarity=0.140  Sum_probs=87.3

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..++.+++|+|||.|..++.+|-..| +.+++.+|.+...+...++.....++. +++++++++.+..        ...+
T Consensus        63 ~~~~~~ilDiGsGaG~PGi~laI~~p-~~~~~Lves~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~--------~~~~  132 (207)
T d1jsxa_          63 YLQGERFIDVGTGPGLPGIPLSIVRP-EAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP--------SEPP  132 (207)
T ss_dssp             GCCSSEEEEETCTTTTTHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC--------CCSC
T ss_pred             hhcCCceeeeeccCCceeeehhhhcc-cceEEEEecchHHHHHHHHHHHHcCCc-ceeeeccchhhhc--------cccc
Confidence            45778999999999999999998877 899999999999999999999999986 5999999987642        1368


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ||+|++-+ ......+++.+.++++++|.+++
T Consensus       133 fD~V~sRA-~~~~~~ll~~~~~~l~~~g~~~~  163 (207)
T d1jsxa_         133 FDGVISRA-FASLNDMVSWCHHLPGEQGRFYA  163 (207)
T ss_dssp             EEEEECSC-SSSHHHHHHHHTTSEEEEEEEEE
T ss_pred             cceehhhh-hcCHHHHHHHHHHhcCCCcEEEE
Confidence            99988754 45677889999999999999987

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=2.4e-10  Score=88.90  Aligned_cols=119  Identities=13%  Similarity=0.109  Sum_probs=90.2

Q ss_pred             CCcHHHHHHHHHHHH----HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE
Q 029803            2 LLLTIHGQLMAMLLR----LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE   77 (187)
Q Consensus         2 ~~~~~~~~ll~~l~~----~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~   77 (187)
                      |+++...+.|...+.    ..+..+|||+.||+|.+++.+|+.   ..+|+++|.++++++.|++|.+.++.. +++++.
T Consensus       191 Q~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i~-n~~~~~  266 (358)
T d1uwva2         191 QVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYH  266 (358)
T ss_dssp             CSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEE
T ss_pred             ccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhcccc-cceeee
Confidence            556666655554433    336779999999999999999985   469999999999999999999999986 599999


Q ss_pred             cchHHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           78 SEALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        78 ~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +++.+.+.....   ...++|+|++|+......+.++.+.+. +|.-++.+
T Consensus       267 ~~~~~~~~~~~~---~~~~~d~vilDPPR~G~~~~~~~l~~~-~~~~ivYV  313 (358)
T d1uwva2         267 ENLEEDVTKQPW---AKNGFDKVLLDPARAGAAGVMQQIIKL-EPIRIVYV  313 (358)
T ss_dssp             CCTTSCCSSSGG---GTTCCSEEEECCCTTCCHHHHHHHHHH-CCSEEEEE
T ss_pred             cchhhhhhhhhh---hhccCceEEeCCCCccHHHHHHHHHHc-CCCEEEEE
Confidence            998765433211   246799999998766666677776554 56655554

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.11  E-value=4.2e-10  Score=82.45  Aligned_cols=103  Identities=16%  Similarity=0.208  Sum_probs=87.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      ...+++|||||.|..++.+|-..| +.+++.+|.+...+...+......++. ++.++++.+.+....-    ...++||
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p-~~~v~Lves~~KK~~FL~~v~~~L~L~-n~~i~~~R~E~~~~~~----~~~~~~D  143 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFP-HLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRK----DVRESYD  143 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCT-TCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCT----TTTTCEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCC-CccceeecchHHHHHHHHHHHHHhCCC-CcEEEeehhhhccccc----cccccce
Confidence            567999999999999999998887 899999999999999999999999987 5899999987653211    1146899


Q ss_pred             EEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           99 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        99 ~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +|++-+ ......+++.+.++++++|.+++
T Consensus       144 ~v~sRA-va~l~~ll~~~~~~l~~~g~~i~  172 (239)
T d1xdza_         144 IVTARA-VARLSVLSELCLPLVKKNGLFVA  172 (239)
T ss_dssp             EEEEEC-CSCHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEEhh-hhCHHHHHHHHhhhcccCCEEEE
Confidence            999875 44677889999999999999987

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.10  E-value=1.2e-09  Score=85.18  Aligned_cols=110  Identities=18%  Similarity=0.192  Sum_probs=91.0

Q ss_pred             HHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCC--------------cEEEEEcc
Q 029803           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDH--------------KINFIESE   79 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~d   79 (187)
                      +++..++.+|||..||+|..++..+...+ ..+|++.|+++++++.+++|++.++..+              .+.+.+.|
T Consensus        40 ~~~~~~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~D  118 (375)
T d2dula1          40 LLNILNPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDD  118 (375)
T ss_dssp             HHHHHCCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESC
T ss_pred             HHHHhCCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhh
Confidence            44566899999999999999998877665 5799999999999999999999877542              46788899


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           80 ALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +...+...      .+.||+|.+|+ ......+++.+.+.++.||+|++..+
T Consensus       119 a~~~~~~~------~~~fDvIDiDP-fGs~~pfldsAi~a~~~~Gll~vTaT  163 (375)
T d2dula1         119 ANRLMAER------HRYFHFIDLDP-FGSPMEFLDTALRSAKRRGILGVTAT  163 (375)
T ss_dssp             HHHHHHHS------TTCEEEEEECC-SSCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hhhhhHhh------cCcCCcccCCC-CCCcHHHHHHHHHHhccCCEEEEEec
Confidence            87766542      57899999996 34556799999999999999998543

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=2.1e-09  Score=81.29  Aligned_cols=119  Identities=18%  Similarity=0.159  Sum_probs=88.5

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      .+...++...++.+|||+++|.|.-+..++..+...++++++|+++..+...+++++++++. ++.+...|.....+.. 
T Consensus        84 ~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~-~~~~~~~d~~~~~~~~-  161 (293)
T d2b9ea1          84 CLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS-CCELAEEDFLAVSPSD-  161 (293)
T ss_dssp             GHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGSCTTC-
T ss_pred             cccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc-ceeeeehhhhhhcccc-
Confidence            34445556678889999999999999999987766789999999999999999999999986 4899999886542221 


Q ss_pred             hcccCCCceeEEEEeCCCccc---------------------------HHHHHHHHhccCCCeEEEEeCCCC
Q 029803           89 KYSENEGSFDYAFVDADKDNY---------------------------CNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~~~~---------------------------~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                         ...++||.|++|+..+..                           ...+..++ .+++||.||......
T Consensus       162 ---~~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl  229 (293)
T d2b9ea1         162 ---PRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSL  229 (293)
T ss_dssp             ---GGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCC
T ss_pred             ---cccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccC
Confidence               113679999999532110                           11333444 479999999876553

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.97  E-value=3.7e-09  Score=77.91  Aligned_cols=97  Identities=13%  Similarity=0.112  Sum_probs=76.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .+..+|||||||+|..+..+++..| +.+++.+|+ |+.+       +.....++++++.+|.++.          ....
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi-------~~~~~~~ri~~~~gd~~~~----------~p~~  140 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYP-LIKGINFDL-PQVI-------ENAPPLSGIEHVGGDMFAS----------VPQG  140 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHH-------TTCCCCTTEEEEECCTTTC----------CCCE
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCC-CCeEEEecc-hhhh-------hccCCCCCeEEecCCcccc----------cccc
Confidence            4567999999999999999999998 899999998 4433       3445567899999998642          2456


Q ss_pred             eEEEEeCC-----CcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           98 DYAFVDAD-----KDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        98 D~i~~d~~-----~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      |++++..-     .+.....++++.+.|+|||.+++.+...
T Consensus       141 D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~  181 (244)
T d1fp1d2         141 DAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFIL  181 (244)
T ss_dssp             EEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred             eEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEe
Confidence            99988642     2345678999999999999988877654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.89  E-value=3.1e-09  Score=76.76  Aligned_cols=108  Identities=16%  Similarity=0.163  Sum_probs=82.9

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      .++.+.++|..++...++.+|||.|||+|.....+.+..+....++++|+++..+..          .....++++|...
T Consensus         3 TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~----------~~~~~~~~~~~~~   72 (223)
T d2ih2a1           3 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL----------PPWAEGILADFLL   72 (223)
T ss_dssp             CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC----------CTTEEEEESCGGG
T ss_pred             CCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh----------cccceeeeeehhc
Confidence            467788889999888899999999999999988888776657889999999875432          3356788888765


Q ss_pred             HHHHHhhcccCCCceeEEEEeCCCc--------------------------------ccHHHHHHHHhccCCCeEEEE
Q 029803           83 VLDQLLKYSENEGSFDYAFVDADKD--------------------------------NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        83 ~~~~~~~~~~~~~~~D~i~~d~~~~--------------------------------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..        ....||+|+.+....                                .+..+++.+++.|++||.+++
T Consensus        73 ~~--------~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~  142 (223)
T d2ih2a1          73 WE--------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF  142 (223)
T ss_dssp             CC--------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cc--------cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence            31        247899999874210                                123567888899999999765

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.89  E-value=7.8e-09  Score=76.11  Aligned_cols=97  Identities=8%  Similarity=0.127  Sum_probs=75.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      ....+|||||+|+|..+..+++.+| +.+++..|. |+.+       +..+..++++++.+|.++.          ...+
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dl-p~vi-------~~~~~~~rv~~~~gD~f~~----------~p~a  139 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFP-KLKCIVFDR-PQVV-------ENLSGSNNLTYVGGDMFTS----------IPNA  139 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCT-TCEEEEEEC-HHHH-------TTCCCBTTEEEEECCTTTC----------CCCC
T ss_pred             cCceEEEEecCCccHHHHHHHHhCC-CCeEEEecC-HHHH-------HhCcccCceEEEecCcccC----------CCCC
Confidence            4567899999999999999999998 899999998 4433       3445567999999998652          2468


Q ss_pred             eEEEEeC-----CCcccHHHHHHHHhccCCC---eEEEEeCCCC
Q 029803           98 DYAFVDA-----DKDNYCNYHERLMKLLKVG---GIAVYDNTLW  133 (187)
Q Consensus        98 D~i~~d~-----~~~~~~~~~~~~~~~L~~g---G~lv~~~~~~  133 (187)
                      |++++..     ..+.....++++.+.|+||   |.+++.+...
T Consensus       140 D~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~  183 (244)
T d1fp2a2         140 DAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI  183 (244)
T ss_dssp             SEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred             cEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeec
Confidence            9998764     2334567899999999998   6666655443

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.82  E-value=3e-09  Score=81.63  Aligned_cols=115  Identities=17%  Similarity=0.163  Sum_probs=82.8

Q ss_pred             cHHHHHHHHHHH----HHcCCCEEEEEcccccHHHHHHHhhCC----CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEE
Q 029803            4 LTIHGQLMAMLL----RLVNAKKTIEIGVFTGYSLLLTALTIP----EDGQITAIDVNRETYEIGLPIIKKAGVDHKINF   75 (187)
Q Consensus         4 ~~~~~~ll~~l~----~~~~~~~vLeiG~g~G~~~~~la~~~~----~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~   75 (187)
                      ++....+|..++    ...++.+|||.|||+|.....+...+.    ...+++++|+++.++..|+.+....+.  ...+
T Consensus        98 P~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~  175 (328)
T d2f8la1          98 PDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTL  175 (328)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEE
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhh
Confidence            344555555544    344567899999999999888765432    245899999999999999999877664  3667


Q ss_pred             EEcchHHHHHHHhhcccCCCceeEEEEeCCCc---------------------ccHHHHHHHHhccCCCeEEEE
Q 029803           76 IESEALSVLDQLLKYSENEGSFDYAFVDADKD---------------------NYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        76 ~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~---------------------~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .++|.....        ...+||+|+.++...                     .+..+++.++++|++||.+++
T Consensus       176 ~~~d~~~~~--------~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~  241 (328)
T d2f8la1         176 LHQDGLANL--------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFF  241 (328)
T ss_dssp             EESCTTSCC--------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             hcccccccc--------ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEE
Confidence            777765421        247899999985321                     123478999999999997654

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.80  E-value=8.1e-09  Score=75.99  Aligned_cols=96  Identities=13%  Similarity=0.161  Sum_probs=72.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCcee
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFD   98 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D   98 (187)
                      +..+|||||||+|..+..+++..| +.+++.+|+. +.++       ......++++..+|..+..          +..|
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~v~Dlp-~vi~-------~~~~~~r~~~~~~d~~~~~----------P~ad  141 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYP-TIKGINFDLP-HVIE-------DAPSYPGVEHVGGDMFVSI----------PKAD  141 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCT-TSEEEEEECT-TTTT-------TCCCCTTEEEEECCTTTCC----------CCCS
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCC-CCeEEEcccH-Hhhh-------hcccCCceEEecccccccC----------CCcc
Confidence            457899999999999999999998 8999999984 3332       2344578999999986531          2345


Q ss_pred             EEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           99 YAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        99 ~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      .+++..     ..+.....++++.+.|+|||.+++.+...
T Consensus       142 ~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~  181 (243)
T d1kyza2         142 AVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECIL  181 (243)
T ss_dssp             CEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEE
T ss_pred             eEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEe
Confidence            555432     23445678999999999999888776653

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.78  E-value=2.7e-08  Score=72.69  Aligned_cols=63  Identities=17%  Similarity=0.219  Sum_probs=53.8

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      +...+..+|||||||+|..|..++..   ..+|+++|+++.+++..++++..   .++++++++|+.+.
T Consensus        17 ~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~~---~~n~~i~~~D~l~~   79 (235)
T d1qama_          17 IRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLVD---HDNFQVLNKDILQF   79 (235)
T ss_dssp             CCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTTT---CCSEEEECCCGGGC
T ss_pred             cCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhhc---ccchhhhhhhhhhc
Confidence            34567899999999999999999986   46999999999999999987643   24799999999874

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.76  E-value=7.6e-08  Score=67.52  Aligned_cols=111  Identities=11%  Similarity=0.094  Sum_probs=82.1

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      +++..| ...++..++|.++|.|..+..++..   +++|+++|.+|++++.+++.     ...++.+++++..++-..+.
T Consensus         9 Evl~~l-~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~~~~l~   79 (182)
T d1wg8a2           9 EALDLL-AVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHLKRHLA   79 (182)
T ss_dssp             HHHHHH-TCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGHHHHHH
T ss_pred             HHHHhc-CCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHHHHHHH
Confidence            344333 4567889999999999999988874   67999999999999888764     23579999988766533322


Q ss_pred             hcccCCCceeEEEEeCCCccc------------HHHHHHHHhccCCCeEEEEeC
Q 029803           89 KYSENEGSFDYAFVDADKDNY------------CNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~~~~------------~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..  ..+.+|.|+.|......            ...++.....|++||.+++-.
T Consensus        80 ~~--~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~  131 (182)
T d1wg8a2          80 AL--GVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIA  131 (182)
T ss_dssp             HT--TCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             Hc--CCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEe
Confidence            11  24689999999754332            235677788999999998743

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=5.6e-08  Score=72.59  Aligned_cols=101  Identities=12%  Similarity=0.079  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH
Q 029803            5 TIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL   84 (187)
Q Consensus         5 ~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   84 (187)
                      +.+..-+...+...+..+|||||+|.|..|..+++.   +.+++++|+++.+++..++.+.......+++++++|+.+. 
T Consensus         7 ~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~-   82 (278)
T d1zq9a1           7 PLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT-   82 (278)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS-
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh-
Confidence            334444444445567789999999999999999987   4599999999999999999987766667899999999764 


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHH
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLM  117 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~  117 (187)
                              ....++.|+......-....+..+.
T Consensus        83 --------~~~~~~~vV~NLPY~Iss~il~~~~  107 (278)
T d1zq9a1          83 --------DLPFFDTCVANLPYQISSPFVFKLL  107 (278)
T ss_dssp             --------CCCCCSEEEEECCGGGHHHHHHHHH
T ss_pred             --------hhhhhhhhhcchHHHHHHHHHHHHH
Confidence                    1234566776654444445555544

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.67  E-value=1.4e-08  Score=72.13  Aligned_cols=110  Identities=22%  Similarity=0.234  Sum_probs=67.6

Q ss_pred             HHHHcCCCEEEEEcccccHHHHHHHh----hC---CCCCEEEEEeCCcchHHHHHHHH------------------HhcC
Q 029803           14 LLRLVNAKKTIEIGVFTGYSLLLTAL----TI---PEDGQITAIDVNRETYEIGLPII------------------KKAG   68 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~la~----~~---~~~~~v~~iD~~~~~~~~a~~~~------------------~~~~   68 (187)
                      +....++.+|+.+||++|.-+-.+|.    ..   ....+|+++|+++..++.|++..                  ...+
T Consensus        19 ~~~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~   98 (193)
T d1af7a2          19 ARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGT   98 (193)
T ss_dssp             HHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECC
T ss_pred             HhccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecC
Confidence            34445667999999999975444332    21   11357999999999999987422                  1111


Q ss_pred             CCC------------cEEEEEcchHHHHHHHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEe
Q 029803           69 VDH------------KINFIESEALSVLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        69 ~~~------------~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ...            .+++...+......      ...++||+|+|-.     +.+.....++.+.+.|+|||+|++-
T Consensus        99 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2          99 GPHEGLVRVRQELANYVEFSSVNLLEKQY------NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             TTSCSEEEECHHHHTTEEEEECCTTCSSC------CCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             CCccceeehHHHHHHHHHHhhhhcccccc------CCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence            000            11222222211000      1236899999974     2344567899999999999999983

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=1.2e-07  Score=69.90  Aligned_cols=115  Identities=10%  Similarity=0.024  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH-H
Q 029803            6 IHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV-L   84 (187)
Q Consensus         6 ~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~-~   84 (187)
                      .+..-+...+...+.+.|||||||.|..|..+++.   ..+++++|+|+.+++..++.+.   ..++++++++|+.++ +
T Consensus         8 ~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~---~~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_           8 FVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPF---LGPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTT---TGGGEEEECSCGGGCCH
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhh---hccchhHHhhhhhhhcc
Confidence            33333444445567889999999999999999985   4689999999999998887542   235799999999862 2


Q ss_pred             HHHhhcccCCCceeEEEEeCCCcccHHHHHHHHhccC--CCeEEEEe
Q 029803           85 DQLLKYSENEGSFDYAFVDADKDNYCNYHERLMKLLK--VGGIAVYD  129 (187)
Q Consensus        85 ~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~--~gG~lv~~  129 (187)
                      ..+...  ...++ .|+.+....-....+..+.....  ...++++.
T Consensus        82 ~~~~~~--~~~~~-~vvgNlPY~Iss~Il~~l~~~~~~~~~~~~m~Q  125 (252)
T d1qyra_          82 GELAEK--MGQPL-RVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQ  125 (252)
T ss_dssp             HHHHHH--HTSCE-EEEEECCTTTHHHHHHHHHTTGGGEEEEEEEEE
T ss_pred             cccccc--cCCCe-EEEecchHHHHHHHHHHhcccccceehhhhhhh
Confidence            222110  02333 45555544444455555533221  23455553

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.57  E-value=6.1e-09  Score=76.67  Aligned_cols=101  Identities=14%  Similarity=0.155  Sum_probs=68.7

Q ss_pred             HHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           15 LRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +...+..+|||||||+|..|..+++.   +.+|+++|+++++++.+++++.   ...+++++++|+.+.  .+     ..
T Consensus        25 ~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l~~--~~-----~~   91 (245)
T d1yuba_          25 LNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQF--QF-----PN   91 (245)
T ss_dssp             CCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTT--TC-----CC
T ss_pred             cCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhh---hccchhhhhhhhhcc--cc-----cc
Confidence            34557789999999999999999986   4599999999999988876653   235799999999864  11     23


Q ss_pred             CceeEEEEeCCCcccHHHHHHHH-hccCCCeEEEE
Q 029803           95 GSFDYAFVDADKDNYCNYHERLM-KLLKVGGIAVY  128 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~-~~L~~gG~lv~  128 (187)
                      ..++.|+......-....+..+. .---...++++
T Consensus        92 ~~~~~vv~NLPY~Ist~il~~~l~~~~~~~~v~m~  126 (245)
T d1yuba_          92 KQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLIV  126 (245)
T ss_dssp             SSEEEEEEECCSSSCHHHHHHHHHHCCCEEEEEEE
T ss_pred             ceeeeEeeeeehhhhHHHHHHHhhhchhhhhhhhh
Confidence            45566666654433344443333 22223345554

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=1e-06  Score=61.55  Aligned_cols=100  Identities=17%  Similarity=0.183  Sum_probs=70.6

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHH--HHHhhcccCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVL--DQLLKYSENE   94 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~   94 (187)
                      ..+..+|||+||+.|.|+.++++.....++++++|+.+-           ... +.+.++++|..+..  ...... ...
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i-~~~~~~~~d~~~~~~~~~~~~~-~~~   86 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI-VGVDFLQGDFRDELVMKALLER-VGD   86 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC-TTEEEEESCTTSHHHHHHHHHH-HTT
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc-CCceEeecccccchhhhhhhhh-ccC
Confidence            357789999999999999999987776789999998762           122 45888998875321  111100 124


Q ss_pred             CceeEEEEeCCCcc--------------cHHHHHHHHhccCCCeEEEEe
Q 029803           95 GSFDYAFVDADKDN--------------YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        95 ~~~D~i~~d~~~~~--------------~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .++|+|++|..+..              ....+.-+.+.|++||.+|+-
T Consensus        87 ~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K  135 (180)
T d1ej0a_          87 SKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVK  135 (180)
T ss_dssp             CCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEE
Confidence            68999999964311              123455566899999999986

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.47  E-value=6.7e-08  Score=70.85  Aligned_cols=75  Identities=9%  Similarity=0.158  Sum_probs=62.6

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC--------CCcEEEEEcchHHHHHHHhhccc
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV--------DHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .+|||..+|.|..+..+|..   +++|+++|.+|......+..++.+..        ..+++++++|+.+++...     
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~-----  161 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----  161 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-----
T ss_pred             CEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc-----
Confidence            48999999999999999986   67999999999988888877665332        237999999999987654     


Q ss_pred             CCCceeEEEEeC
Q 029803           93 NEGSFDYAFVDA  104 (187)
Q Consensus        93 ~~~~~D~i~~d~  104 (187)
                       ..+||+|++|+
T Consensus       162 -~~~~DvIYlDP  172 (250)
T d2oyra1         162 -TPRPQVVYLDP  172 (250)
T ss_dssp             -SSCCSEEEECC
T ss_pred             -CCCCCEEEECC
Confidence             46799999996

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.46  E-value=1.7e-07  Score=74.17  Aligned_cols=117  Identities=17%  Similarity=0.137  Sum_probs=89.0

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCC------------CCEEEEEeCCcchHHHHHHHHHhcCCC-
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE------------DGQITAIDVNRETYEIGLPIIKKAGVD-   70 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~------------~~~v~~iD~~~~~~~~a~~~~~~~~~~-   70 (187)
                      ++.+..++..++...++.+|+|.+||+|.....+.+.+..            ...++++|+++.....|+.++-..+.. 
T Consensus       147 P~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~  226 (425)
T d2okca1         147 PRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT  226 (425)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             chhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcc
Confidence            4667778888877777889999999999999887765531            125999999999999999998877765 


Q ss_pred             CcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC--------------------cccHHHHHHHHhccCCCeEEEE
Q 029803           71 HKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--------------------DNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        71 ~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~--------------------~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ....+..+|..+.        ....+||+|+.++..                    .....++..++.+|++||.+++
T Consensus       227 ~~~~i~~~d~l~~--------~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~i  296 (425)
T d2okca1         227 DRSPIVCEDSLEK--------EPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAV  296 (425)
T ss_dssp             SCCSEEECCTTTS--------CCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccceeecCchhhh--------hcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEE
Confidence            3456788887642        124689999988521                    0124589999999999997655

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=4.1e-06  Score=67.76  Aligned_cols=119  Identities=10%  Similarity=0.014  Sum_probs=84.1

Q ss_pred             cHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCC-----------------CCEEEEEeCCcchHHHHHHHHHh
Q 029803            4 LTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPE-----------------DGQITAIDVNRETYEIGLPIIKK   66 (187)
Q Consensus         4 ~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~-----------------~~~v~~iD~~~~~~~~a~~~~~~   66 (187)
                      ++.+.+++..++...+..+|+|.+||+|.+.+.+...+..                 ...++++|+++.+...++.++-.
T Consensus       149 P~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l  228 (524)
T d2ar0a1         149 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL  228 (524)
T ss_dssp             CHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred             ccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHh
Confidence            4566777877777777789999999999998876654421                 12589999999999999998876


Q ss_pred             cCCCCc----EEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-----------------cccHHHHHHHHhccCCCeE
Q 029803           67 AGVDHK----INFIESEALSVLDQLLKYSENEGSFDYAFVDADK-----------------DNYCNYHERLMKLLKVGGI  125 (187)
Q Consensus        67 ~~~~~~----~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-----------------~~~~~~~~~~~~~L~~gG~  125 (187)
                      ++....    ..+..++....-..      ...+||+|+.++..                 .....|+..+++.|++||.
T Consensus       229 ~~~~~~i~~~~~~~~~~~l~~d~~------~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr  302 (524)
T d2ar0a1         229 HDIEGNLDHGGAIRLGNTLGSDGE------NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGR  302 (524)
T ss_dssp             TTCCCBGGGTBSEEESCTTSHHHH------TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEE
T ss_pred             hcccccccccchhhhhhhhhhccc------ccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCc
Confidence            665421    23455554432111      24689999988522                 1123589999999999997


Q ss_pred             EEE
Q 029803          126 AVY  128 (187)
Q Consensus       126 lv~  128 (187)
                      +.+
T Consensus       303 ~ai  305 (524)
T d2ar0a1         303 AAV  305 (524)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=98.07  E-value=1.3e-05  Score=55.35  Aligned_cols=106  Identities=18%  Similarity=0.180  Sum_probs=71.0

Q ss_pred             HHHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           14 LLRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .++..++.+|+-+|||. |..++.+++... ..+|+++|.+++.++.+++.    |...-+.....+..+.+.++.    
T Consensus        22 ~a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~~l----Ga~~~i~~~~~~~~~~v~~~t----   92 (174)
T d1jqba2          22 LADIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAKFY----GATDILNYKNGHIEDQVMKLT----   92 (174)
T ss_dssp             HTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHHHH----TCSEEECGGGSCHHHHHHHHT----
T ss_pred             HhCCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHHhh----CccccccccchhHHHHHHHHh----
Confidence            35577888999999986 788888988764 35899999999888888753    432212122223333333331    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ....+|+||-....   ...++++++.++|+|.+++-..
T Consensus        93 ~g~G~D~vid~~g~---~~~~~~a~~~~~~~G~iv~~G~  128 (174)
T d1jqba2          93 NGKGVDRVIMAGGG---SETLSQAVKMVKPGGIISNINY  128 (174)
T ss_dssp             TTSCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCC
T ss_pred             hccCcceEEEccCC---HHHHHHHHHHHhcCCEEEEEee
Confidence            23569988764332   2456788899999999998543

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.98  E-value=1.1e-05  Score=56.07  Aligned_cols=107  Identities=14%  Similarity=0.141  Sum_probs=68.6

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +..++++||-+|+| .|..++.+|+... ..+|+++|.+++.++.+++.    |...-+.....+..+..+..... ...
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~~l----Ga~~vi~~~~~~~~~~~~~i~~~-~~~   98 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAEEI----GADLTLNRRETSVEERRKAIMDI-THG   98 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHHHT----TCSEEEETTTSCHHHHHHHHHHH-TTT
T ss_pred             CCCCCCEEEEECCCccchhheecccccc-cccccccccccccccccccc----cceEEEeccccchHHHHHHHHHh-hCC
Confidence            34567899999987 4778888888864 24899999999998887653    43211111223333332222211 124


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..+|+||-....   ...++.+.+.+++||.+++-..
T Consensus        99 ~g~Dvvid~vG~---~~~~~~a~~~l~~~G~iv~~G~  132 (182)
T d1vj0a2          99 RGADFILEATGD---SRALLEGSELLRRGGFYSVAGV  132 (182)
T ss_dssp             SCEEEEEECSSC---TTHHHHHHHHEEEEEEEEECCC
T ss_pred             CCceEEeecCCc---hhHHHHHHHHhcCCCEEEEEee
Confidence            569988754322   3456788899999999987543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.95  E-value=1.2e-05  Score=56.53  Aligned_cols=109  Identities=14%  Similarity=0.079  Sum_probs=74.0

Q ss_pred             HHHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           14 LLRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .+...++.+||-+|||. |..++.+++... ..+|+++|.+++.++.+++.    +...-+.....+..+...++.    
T Consensus        20 ~a~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~----Ga~~~~~~~~~~~~~~i~~~t----   90 (195)
T d1kola2          20 TAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQ----GFEIADLSLDTPLHEQIAALL----   90 (195)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT----TCEEEETTSSSCHHHHHHHHH----
T ss_pred             HhCCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhc----cccEEEeCCCcCHHHHHHHHh----
Confidence            35677889999999987 667788887765 67999999999998888754    322101112234444333332    


Q ss_pred             CCCceeEEEEeCCC------------cccHHHHHHHHhccCCCeEEEEeCC
Q 029803           93 NEGSFDYAFVDADK------------DNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        93 ~~~~~D~i~~d~~~------------~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+..+|.+|-....            ......++.+.+.++|+|.+++-.+
T Consensus        91 ~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~  141 (195)
T d1kola2          91 GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  141 (195)
T ss_dssp             SSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence            24679988744221            1134689999999999999998654

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.92  E-value=1.1e-05  Score=55.33  Aligned_cols=100  Identities=20%  Similarity=0.097  Sum_probs=66.6

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      ...++++|+-+|+| .|..+..+++..  +.+++++|.+++.++.+++.    |..  ..+...+-.+.....      .
T Consensus        24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~l----Ga~--~~i~~~~~~~~~~~~------~   89 (168)
T d1piwa2          24 GCGPGKKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMKM----GAD--HYIATLEEGDWGEKY------F   89 (168)
T ss_dssp             TCSTTCEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHHH----TCS--EEEEGGGTSCHHHHS------C
T ss_pred             CcCCCCEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhcc----CCc--EEeeccchHHHHHhh------h
Confidence            46678899999988 677888888875  57999999999999887764    432  112111212233332      4


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      +.+|+++..... .....++.+.+.++++|.+++-.
T Consensus        90 ~~~d~vi~~~~~-~~~~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          90 DTFDLIVVCASS-LTDIDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             SCEEEEEECCSC-STTCCTTTGGGGEEEEEEEEECC
T ss_pred             cccceEEEEecC-CccchHHHHHHHhhccceEEEec
Confidence            689988753221 11123566789999999998854

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.90  E-value=2.3e-05  Score=53.96  Aligned_cols=103  Identities=18%  Similarity=0.280  Sum_probs=68.8

Q ss_pred             HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCC
Q 029803           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENE   94 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~   94 (187)
                      +..++.+||-+|+|. |..+..+++... ..+++.+|.+++.++.+++.    +...-+.....|..+.+.++     .+
T Consensus        25 ~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~~----Ga~~~i~~~~~~~~~~i~~~-----t~   94 (174)
T d1f8fa2          25 KVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQL----GATHVINSKTQDPVAAIKEI-----TD   94 (174)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHHH----TCSEEEETTTSCHHHHHHHH-----TT
T ss_pred             CCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHHc----CCeEEEeCCCcCHHHHHHHH-----cC
Confidence            466788999999873 456777777765 56888999999888887764    43321222223344444443     24


Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +.+|+||-..   .....++.+.++++++|.+++-..
T Consensus        95 gg~D~vid~~---G~~~~~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          95 GGVNFALEST---GSPEILKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             SCEEEEEECS---CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred             CCCcEEEEcC---CcHHHHHHHHhcccCceEEEEEee
Confidence            5899888643   334577888999999999988543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=6.4e-05  Score=51.40  Aligned_cols=105  Identities=14%  Similarity=0.095  Sum_probs=68.2

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE-cchHHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE-SEALSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~   93 (187)
                      +..++.+|+-+|+| .|..+..+++... ..+|+++|.+++.++.+++.    |... +.... .+..+....+..  ..
T Consensus        23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G-~~~Vi~~d~~~~rl~~a~~~----Ga~~-~~~~~~~~~~~~~~~~~~--~~   94 (171)
T d1pl8a2          23 GVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAKEI----GADL-VLQISKESPQEIARKVEG--QL   94 (171)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHT----TCSE-EEECSSCCHHHHHHHHHH--HH
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHHcC-CceEEeccCCHHHHHHHHHh----CCcc-cccccccccccccccccc--cC
Confidence            34567899999987 4567777777764 45899999999988887754    4332 22222 232222222111  01


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      +..+|+||-..   .....++.+.+++++||.+++-..
T Consensus        95 g~g~Dvvid~~---G~~~~~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          95 GCKPEVTIECT---GAEASIQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             TSCCSEEEECS---CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred             CCCceEEEecc---CCchhHHHHHHHhcCCCEEEEEec
Confidence            46799877543   335578889999999999998543

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.87  E-value=7e-06  Score=59.50  Aligned_cols=115  Identities=9%  Similarity=-0.021  Sum_probs=68.9

Q ss_pred             cHHHHHHHHHHHH--HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            4 LTIHGQLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         4 ~~~~~~ll~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      ++...+|....-+  ..+..+|+|+|||.|.++.+++...+ ...+.++++--...+. .......+ .+.+++...+..
T Consensus        49 SR~~~Kl~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~-v~~V~g~~iG~d~~e~-P~~~~~~~-~ni~~~~~~~dv  125 (257)
T d2p41a1          49 SRGSAKLRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKN-VREVKGLTKGGPGHEE-PIPMSTYG-WNLVRLQSGVDV  125 (257)
T ss_dssp             STHHHHHHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCC-CCCCCSTT-GGGEEEECSCCT
T ss_pred             chHHHHHHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcC-CCceeEEEecCccccC-Cccccccc-cccccchhhhhH
Confidence            4445555444333  34556899999999999999887643 5678888773221000 00000111 134555555533


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCCCc---------ccHHHHHHHHhccCCCeEEEEe
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDADKD---------NYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~~~---------~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+        ..++.|.|++|..+.         .....++.+.+.|+|||-+|+.
T Consensus       126 ~~l--------~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvK  174 (257)
T d2p41a1         126 FFI--------PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  174 (257)
T ss_dssp             TTS--------CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             Hhc--------CCCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence            221        257899999996431         1234677778999999998884

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.80  E-value=0.0003  Score=47.77  Aligned_cols=103  Identities=12%  Similarity=0.128  Sum_probs=68.9

Q ss_pred             HHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc----chHHHHHHHhhc
Q 029803           16 RLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES----EALSVLDQLLKY   90 (187)
Q Consensus        16 ~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~----d~~~~~~~~~~~   90 (187)
                      ...++.+||-+|+| .|..++.+++..  +.+|+++|.+++.++.+++.    +..  ..+...    +..+....+...
T Consensus        23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~~----ga~--~~~~~~~~~~~~~~~~~~~~~~   94 (170)
T d1e3ja2          23 GVQLGTTVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKNC----GAD--VTLVVDPAKEEESSIIERIRSA   94 (170)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----TCS--EEEECCTTTSCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHHc----CCc--EEEeccccccccchhhhhhhcc
Confidence            35677899999988 677888888875  57999999999998888764    321  222221    112222222111


Q ss_pred             ccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           91 SENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                        .+..+|+||-..   .....++.++++++++|.+++-..
T Consensus        95 --~g~g~D~vid~~---g~~~~~~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2          95 --IGDLPNVTIDCS---GNEKCITIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             --SSSCCSEEEECS---CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred             --cccCCceeeecC---CChHHHHHHHHHHhcCCceEEEec
Confidence              246789876543   334678888999999999998543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.80  E-value=6.3e-05  Score=51.25  Aligned_cols=96  Identities=14%  Similarity=0.166  Sum_probs=69.5

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      +|.+|+-||+| .|..++..|..+  +++|+.+|.+++.++..+..+.     .+++....+.....+.+       ...
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~l~~~~-------~~a   96 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLFG-----SRVELLYSNSAEIETAV-------AEA   96 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHHHHHHH-------HTC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhhHHHhh-------ccC
Confidence            68899999999 567888888887  5899999999998887776653     34666666654444444       568


Q ss_pred             eEEEEeCC---CcccHHHHHHHHhccCCCeEEEE
Q 029803           98 DYAFVDAD---KDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        98 D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+|+...-   .+...-.-+.+.+.||||++|+=
T Consensus        97 DivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVD  130 (168)
T d1pjca1          97 DLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVD  130 (168)
T ss_dssp             SEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred             cEEEEeeecCCcccCeeecHHHHhhcCCCcEEEE
Confidence            99987642   22222345667899999998874

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.77  E-value=0.00011  Score=49.81  Aligned_cols=101  Identities=14%  Similarity=0.139  Sum_probs=65.7

Q ss_pred             HHHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           15 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      ....++++|+-+|+| .|..+..+++..  +.+|+++|.+++.++.+++    .+...-+.....+..+.+...      
T Consensus        23 ~~~~~g~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~~~------   90 (166)
T d1llua2          23 TNARPGQWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARK----LGASLTVNARQEDPVEAIQRD------   90 (166)
T ss_dssp             HTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH----TTCSEEEETTTSCHHHHHHHH------
T ss_pred             hCCCCCCEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhc----cCccccccccchhHHHHHHHh------
Confidence            456788899999986 466777788876  5799999999988887765    343321211222333322222      


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ...+|.++.+..   ....++.+.++|+++|.+++-.
T Consensus        91 ~~g~~~~i~~~~---~~~~~~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          91 IGGAHGVLVTAV---SNSAFGQAIGMARRGGTIALVG  124 (166)
T ss_dssp             HSSEEEEEECCS---CHHHHHHHHTTEEEEEEEEECC
T ss_pred             hcCCcccccccc---cchHHHHHHHHhcCCcEEEEEE
Confidence            234555555432   2456788999999999998853

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=3.9e-05  Score=58.09  Aligned_cols=60  Identities=7%  Similarity=0.051  Sum_probs=49.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV   83 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   83 (187)
                      +..+|||||+|.|..|..++.... ..+++++|.++...+..++.+.    .++++++++|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchhhc
Confidence            466899999999999999987642 3599999999999998887653    35699999998753

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=5.6e-05  Score=51.85  Aligned_cols=101  Identities=16%  Similarity=0.117  Sum_probs=67.5

Q ss_pred             HHHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           15 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .+..++++||-.|+  +.|..++.+|+..  +.++++++.+++..+.+++    .|...-+.....|..+.+....    
T Consensus        24 ~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~i~~~t----   93 (174)
T d1yb5a2          24 ACVKAGESVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ----NGAHEVFNHREVNYIDKIKKYV----   93 (174)
T ss_dssp             SCCCTTCEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSTTHHHHHHHHH----
T ss_pred             hCCCCCCEEEEEecccccccccccccccc--Ccccccccccccccccccc----cCcccccccccccHHHHhhhhh----
Confidence            34567889999995  5778888899886  5799999888877666654    4543222222233334333332    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..+.+|+|+-...    ...++.+++.|+|+|.++.-
T Consensus        94 ~~~g~d~v~d~~g----~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          94 GEKGIDIIIEMLA----NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             CTTCEEEEEESCH----HHHHHHHHHHEEEEEEEEEC
T ss_pred             ccCCceEEeeccc----HHHHHHHHhccCCCCEEEEE
Confidence            2467998775421    35678889999999999874

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.65  E-value=0.00023  Score=48.82  Aligned_cols=104  Identities=19%  Similarity=0.280  Sum_probs=70.7

Q ss_pred             HHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc-hHH-HHHHHhhcc
Q 029803           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALS-VLDQLLKYS   91 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~-~~~~~~~~~   91 (187)
                      ....++.+|+-+|||. |..++.+++... ..+|+.+|.+++.++.+++.    |...-+.....| ... .....    
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~----Ga~~~i~~~~~~~~~~~~~~~~----   94 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKAL----GATDCLNPRELDKPVQDVITEL----   94 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT----TCSEEECGGGCSSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHh----CCCcccCCccchhhhhhhHhhh----
Confidence            3466778999999986 888999999875 56899999999988877764    432211111222 112 22222    


Q ss_pred             cCCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEeCC
Q 029803           92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYDNT  131 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~~~  131 (187)
                       ....+|++|-..   .....++++++.++++ |.+++-..
T Consensus        95 -~~~G~d~vie~~---G~~~~~~~a~~~~~~g~G~~v~vG~  131 (174)
T d1e3ia2          95 -TAGGVDYSLDCA---GTAQTLKAAVDCTVLGWGSCTVVGA  131 (174)
T ss_dssp             -HTSCBSEEEESS---CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             -hcCCCcEEEEec---ccchHHHHHHHHhhcCCeEEEecCC
Confidence             146899887543   3456788899999996 99988543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.60  E-value=0.00013  Score=49.63  Aligned_cols=104  Identities=19%  Similarity=0.149  Sum_probs=67.6

Q ss_pred             HHHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           15 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .+..++++||-+|+  +.|..++.+++... ..+|+++|.+++..+.+++.    |..   .++..+..+..+..... .
T Consensus        23 ~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g-~~~V~~~~~~~~~~~~~~~~----Ga~---~~i~~~~~~~~~~~~~~-~   93 (170)
T d1jvba2          23 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVS-GATIIGVDVREEAVEAAKRA----GAD---YVINASMQDPLAEIRRI-T   93 (170)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHT-CCEEEEEESSHHHHHHHHHH----TCS---EEEETTTSCHHHHHHHH-T
T ss_pred             hCCCCCCEEEEEeccccceeeeeecccccc-cccccccccchhhHHHHHHc----CCc---eeeccCCcCHHHHHHHH-h
Confidence            34667889999996  35666777777654 46999999999888877764    432   22222222222222111 1


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .+..+|+++-..   .....++.+++.++|+|.+++-.
T Consensus        94 ~~~~~d~vid~~---g~~~~~~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          94 ESKGVDAVIDLN---NSEKTLSVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             TTSCEEEEEESC---CCHHHHTTGGGGEEEEEEEEECC
T ss_pred             hcccchhhhccc---ccchHHHhhhhhcccCCEEEEec
Confidence            245799777543   34456778899999999998854

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.50  E-value=0.0003  Score=47.99  Aligned_cols=99  Identities=15%  Similarity=0.145  Sum_probs=64.9

Q ss_pred             HcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc--chHHHHHHHhhcccC
Q 029803           17 LVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES--EALSVLDQLLKYSEN   93 (187)
Q Consensus        17 ~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~--d~~~~~~~~~~~~~~   93 (187)
                      ..++.+||-+|+|. |..++.+++... ..+++++|.+++.++.+++.    +..   +++..  |..+.....    ..
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~~----ga~---~~i~~~~~~~~~~~~~----~~   97 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAERL----GAD---HVVDARRDPVKQVMEL----TR   97 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHHT----TCS---EEEETTSCHHHHHHHH----TT
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhhc----ccc---eeecCcccHHHHHHHh----hC
Confidence            45678999999874 455667777654 56899999999887777753    322   22322  222222222    12


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ...+|+||-..   .....++.+++.++++|.+++-.
T Consensus        98 ~~g~d~vid~~---g~~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2          98 GRGVNVAMDFV---GSQATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             TCCEEEEEESS---CCHHHHHHGGGGEEEEEEEEECC
T ss_pred             CCCceEEEEec---CcchHHHHHHHHHhCCCEEEEEe
Confidence            45799887643   33446788899999999999843

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.00059  Score=46.59  Aligned_cols=103  Identities=13%  Similarity=0.135  Sum_probs=67.4

Q ss_pred             HHHcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           15 LRLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .+..++++||-.|++  .|..++.+|+..  +.+|++++.+++..+.+++.    |...-+.....|..+.+.++-    
T Consensus        24 ~~l~~g~~Vlv~ga~g~vG~~~iqlak~~--Ga~Vi~~~~s~~k~~~~~~l----Ga~~vi~~~~~d~~~~v~~~t----   93 (179)
T d1qora2          24 YEIKPDEQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVGTAQKAQSALKA----GAWQVINYREEDLVERLKEIT----   93 (179)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHH----TCSEEEETTTSCHHHHHHHHT----
T ss_pred             hCCCCCCEEEEEccccccchHHHHHHHHh--CCeEeecccchHHHHHHHhc----CCeEEEECCCCCHHHHHHHHh----
Confidence            345677899998655  567888888875  68999999999988877653    533222222234444444331    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+..+|+|+-....    +.++.+...++++|.+++...
T Consensus        94 ~g~g~d~v~d~~g~----~~~~~~~~~l~~~G~~v~~g~  128 (179)
T d1qora2          94 GGKKVRVVYDSVGR----DTWERSLDCLQRRGLMVSFGN  128 (179)
T ss_dssp             TTCCEEEEEECSCG----GGHHHHHHTEEEEEEEEECCC
T ss_pred             CCCCeEEEEeCccH----HHHHHHHHHHhcCCeeeeccc
Confidence            24678976543322    246778899999998877443

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.003  Score=42.54  Aligned_cols=98  Identities=17%  Similarity=0.214  Sum_probs=65.7

Q ss_pred             HHHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           15 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      .+..++++||-+|+| .|..++.+++..  +.+++.+|.+++..+.+++.    +..   .++...-.+....      .
T Consensus        26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~l----Gad---~~i~~~~~~~~~~------~   90 (168)
T d1uufa2          26 WQAGPGKKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKAL----GAD---EVVNSRNADEMAA------H   90 (168)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHH----TCS---EEEETTCHHHHHT------T
T ss_pred             hCCCCCCEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhcc----CCc---EEEECchhhHHHH------h
Confidence            456788999999986 467888888875  57888999988887776643    432   2233222222221      2


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ...+|.++-......   .++.+.++++++|.+++-.
T Consensus        91 ~~~~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          91 LKSFDFILNTVAAPH---NLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             TTCEEEEEECCSSCC---CHHHHHTTEEEEEEEEECC
T ss_pred             cCCCceeeeeeecch---hHHHHHHHHhcCCEEEEec
Confidence            468998886543322   3566789999999999853

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.21  E-value=0.0022  Score=43.74  Aligned_cols=105  Identities=15%  Similarity=0.202  Sum_probs=64.5

Q ss_pred             HHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcch-HHHHHHHhhcccC
Q 029803           16 RLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEA-LSVLDQLLKYSEN   93 (187)
Q Consensus        16 ~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~~   93 (187)
                      +..++.+|+-+|+|. |..++.+++... ..+|+++|.+++.++.|++.    +....+.....+. .+......    .
T Consensus        26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G-~~~Vi~vd~~~~kl~~Ak~~----GA~~~in~~~~~~~~~~~~~~~----~   96 (176)
T d1d1ta2          26 KVKPGSTCVVFGLGGVGLSVIMGCKSAG-ASRIIGIDLNKDKFEKAMAV----GATECISPKDSTKPISEVLSEM----T   96 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHH----H
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcC-CceEEEecCcHHHHHHHHhc----CCcEEECccccchHHHHHHHHh----c
Confidence            356778999999874 456777777764 57999999999999988876    3222121122221 22222221    1


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhcc-CCCeEEEEeCCC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLL-KVGGIAVYDNTL  132 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L-~~gG~lv~~~~~  132 (187)
                      ...+|.++....   ....++.....+ +.+|.+++-...
T Consensus        97 g~G~d~vi~~~g---~~~~~~~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2          97 GNNVGYTFEVIG---HLETMIDALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             TSCCCEEEECSC---CHHHHHHHHTTSCTTTCEEEECSCC
T ss_pred             cccceEEEEeCC---chHHHHHHHHHhhcCCeEEEEEEcc
Confidence            467998887542   333445555555 555888875443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.15  E-value=0.0018  Score=44.12  Aligned_cols=104  Identities=13%  Similarity=0.214  Sum_probs=65.0

Q ss_pred             HHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc--hHHHHHHHhhcc
Q 029803           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE--ALSVLDQLLKYS   91 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d--~~~~~~~~~~~~   91 (187)
                      .+.+++.+||-+|+|. |..++.+++... ..+|+++|.+++.++.+++.    +...-+.....|  ..+.....    
T Consensus        23 a~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~~l----Ga~~~i~~~~~d~~~~~~~~~~----   93 (174)
T d1p0fa2          23 AKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAIEL----GATECLNPKDYDKPIYEVICEK----   93 (174)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHT----TCSEEECGGGCSSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHHHc----CCcEEEcCCCchhHHHHHHHHh----
Confidence            4467888999999874 456666777665 57899999999999988763    433222222223  22222222    


Q ss_pred             cCCCceeEEEEeCCCcccHHHHHHHHhccC-CCeEEEEeCC
Q 029803           92 ENEGSFDYAFVDADKDNYCNYHERLMKLLK-VGGIAVYDNT  131 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~-~gG~lv~~~~  131 (187)
                       .+..+|.+|-...   ....+++....++ ++|.+++-..
T Consensus        94 -~~~G~d~vid~~g---~~~~~~~~~~~~~~~~G~~v~vG~  130 (174)
T d1p0fa2          94 -TNGGVDYAVECAG---RIETMMNALQSTYCGSGVTVVLGL  130 (174)
T ss_dssp             -TTSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             -cCCCCcEEEEcCC---CchHHHHHHHHHHHhcCceEEEEE
Confidence             2457998886542   3345555666555 4688887443

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.13  E-value=0.0015  Score=43.88  Aligned_cols=101  Identities=18%  Similarity=0.195  Sum_probs=65.4

Q ss_pred             HHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccC
Q 029803           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~   93 (187)
                      .+..++++||-.|+|. |..++.+++..  +.+|+++|.+++.++.+++    .|...-+.....|..+.+....     
T Consensus        23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~----~Ga~~~~~~~~~~~~~~~~~~~-----   91 (168)
T d1rjwa2          23 TGAKPGEWVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE----LGADLVVNPLKEDAAKFMKEKV-----   91 (168)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH----TTCSEEECTTTSCHHHHHHHHH-----
T ss_pred             hCCCCCCEEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhh----cCcceecccccchhhhhccccc-----
Confidence            4567888999999874 55666677764  5689999999998887765    3432111111223333333331     


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                       ..+|.++.+.   .....++.+.+.++++|.+++-.
T Consensus        92 -~~~~~~v~~~---~~~~~~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          92 -GGVHAAVVTA---VSKPAFQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             -SSEEEEEESS---CCHHHHHHHHHHEEEEEEEEECC
T ss_pred             -CCCceEEeec---CCHHHHHHHHHHhccCCceEecc
Confidence             3455555554   23567888999999999999853

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.13  E-value=0.0021  Score=43.63  Aligned_cols=95  Identities=18%  Similarity=0.180  Sum_probs=63.2

Q ss_pred             HHHcCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           15 LRLVNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .+..++++||-.|.  +.|..++.+++..  +.++++++.+++..+.+++    .|...  -+-..+..+....      
T Consensus        23 ~~~~~g~~VlI~ga~G~vG~~aiqlak~~--G~~vi~~~~~~~~~~~~~~----lGa~~--~i~~~~~~~~~~~------   88 (171)
T d1iz0a2          23 AQARPGEKVLVQAAAGALGTAAVQVARAM--GLRVLAAASRPEKLALPLA----LGAEE--AATYAEVPERAKA------   88 (171)
T ss_dssp             TTCCTTCEEEESSTTBHHHHHHHHHHHHT--TCEEEEEESSGGGSHHHHH----TTCSE--EEEGGGHHHHHHH------
T ss_pred             hCCCCCCEEEEEeccccchhhhhhhhccc--ccccccccccccccccccc----cccce--eeehhhhhhhhhc------
Confidence            34678889999884  4567888888886  5799999998888777664    35432  1212222222222      


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       ...+|+|| |..-    ..++.+++.|+++|.++.-
T Consensus        89 -~~g~D~v~-d~~G----~~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          89 -WGGLDLVL-EVRG----KEVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             -TTSEEEEE-ECSC----TTHHHHHTTEEEEEEEEEC
T ss_pred             -cccccccc-cccc----hhHHHHHHHHhcCCcEEEE
Confidence             46799876 3322    2357788999999999874

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.13  E-value=0.00038  Score=47.74  Aligned_cols=101  Identities=15%  Similarity=0.059  Sum_probs=64.9

Q ss_pred             HHHcCCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhccc
Q 029803           15 LRLVNAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSE   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~   92 (187)
                      .+..++++||-.|  .+.|..++.+|+..  +.+++++.-+++..+.++    +.+...-+.....|..+.+.+..    
T Consensus        21 ~~~~~g~~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~----~~Ga~~vi~~~~~~~~~~v~~~t----   90 (183)
T d1pqwa_          21 GRLSPGERVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLS----RLGVEYVGDSRSVDFADEILELT----   90 (183)
T ss_dssp             SCCCTTCEEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHH----TTCCSEEEETTCSTHHHHHHHHT----
T ss_pred             hCCCCCCEEEEECCCCCcccccchhhccc--cccceeeecccccccccc----cccccccccCCccCHHHHHHHHh----
Confidence            3456678899877  45778888888876  578888887776666555    34543211112223334333331    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .+..+|+||-...    ...++.+++.|+++|.++.-
T Consensus        91 ~~~g~d~v~d~~g----~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          91 DGYGVDVVLNSLA----GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             TTCCEEEEEECCC----THHHHHHHHTEEEEEEEEEC
T ss_pred             CCCCEEEEEeccc----chHHHHHHHHhcCCCEEEEE
Confidence            2467998886433    24677888999999999873

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.00  E-value=0.0014  Score=45.04  Aligned_cols=102  Identities=20%  Similarity=0.146  Sum_probs=63.2

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCC---C--CcEE------------EEEcc
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGV---D--HKIN------------FIESE   79 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---~--~~~~------------~~~~d   79 (187)
                      .+|.+|+-||+| .|..++..|..+  +++|+.+|.+++.++..+....+.-.   .  ...+            +... 
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~-  103 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKK-  103 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CC-
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHH-
Confidence            478899999999 467888888887  58999999999988887765422100   0  0000            1111 


Q ss_pred             hHHHHHHHhhcccCCCceeEEEEeCC---CcccHHHHHHHHhccCCCeEEEE
Q 029803           80 ALSVLDQLLKYSENEGSFDYAFVDAD---KDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~D~i~~d~~---~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ..+.+...      -...|+|+...-   .....-.-+.+.+.||||++|+=
T Consensus       104 ~~~~l~~~------l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVD  149 (183)
T d1l7da1         104 QAEAVLKE------LVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIID  149 (183)
T ss_dssp             HHHHHHHH------HTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEE
T ss_pred             HHHHHHHH------HHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEE
Confidence            11112221      157899987642   22222345667899999998874

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.99  E-value=0.00092  Score=47.96  Aligned_cols=54  Identities=11%  Similarity=0.140  Sum_probs=44.4

Q ss_pred             HHHHHHHHH--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHH
Q 029803            9 QLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIK   65 (187)
Q Consensus         9 ~ll~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~   65 (187)
                      +|+..+++.  .++..|||..+|+|.++....+.   +.+.+++|++++.++.|+++++
T Consensus       200 ~L~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~---~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         200 DLIERIIRASSNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHHCCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhCCCCCEEEECCCCchHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHc
Confidence            566666663  46689999999999998766554   5799999999999999999875

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.94  E-value=0.0018  Score=43.72  Aligned_cols=91  Identities=18%  Similarity=0.236  Sum_probs=55.7

Q ss_pred             CEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           21 KKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        21 ~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      ++|+=||||. |.+-...+.......+|+++|.+++.++.+++.    +.   +.....+.... .        ....|+
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~~-~--------~~~~dl   65 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKV-E--------DFSPDF   65 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGG-G--------GTCCSE
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhhh-h--------cccccc
Confidence            3688899863 433222222222246899999999988877764    22   21222222111 0        246799


Q ss_pred             EEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803          100 AFVDADKDNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus       100 i~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      |++..........++.+.+.++++.+++
T Consensus        66 Iila~p~~~~~~vl~~l~~~~~~~~ii~   93 (171)
T d2g5ca2          66 VMLSSPVRTFREIAKKLSYILSEDATVT   93 (171)
T ss_dssp             EEECSCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             ccccCCchhhhhhhhhhhcccccccccc
Confidence            9987766667778888888888876554

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.79  E-value=0.0019  Score=46.83  Aligned_cols=57  Identities=9%  Similarity=-0.011  Sum_probs=46.0

Q ss_pred             HHHHHHHHH--cCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC
Q 029803            9 QLMAMLLRL--VNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG   68 (187)
Q Consensus         9 ~ll~~l~~~--~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   68 (187)
                      +|+..++..  .++..|||..+|+|.++......   +.+.+++|++++..+.|++++....
T Consensus       195 ~L~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~l---gR~~ig~El~~~y~~~a~~Ri~~~~  253 (279)
T d1eg2a_         195 AVIERLVRALSHPGSTVLDFFAGSGVTARVAIQE---GRNSICTDAAPVFKEYYQKQLTFLQ  253 (279)
T ss_dssp             HHHHHHHHHHSCTTCEEEETTCTTCHHHHHHHHH---TCEEEEEESSTHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHhhcCCCCEEEecCCCCcHHHHHHHHh---CCeEEEEeCCHHHHHHHHHHHHHhh
Confidence            455666553  47789999999999998877665   5699999999999999999997643

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.76  E-value=0.0032  Score=42.55  Aligned_cols=101  Identities=16%  Similarity=0.239  Sum_probs=64.9

Q ss_pred             HHHcCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEE--cchHHHHHHHhhcc
Q 029803           15 LRLVNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIE--SEALSVLDQLLKYS   91 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~   91 (187)
                      .+..++.+||-.|+| .|..++.+++... ..+|+++|.+++..+.+++.    |...-+....  .+........    
T Consensus        24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak~l----Ga~~~i~~~~~~~~~~~~~~~~----   94 (176)
T d2fzwa2          24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAKEF----GATECINPQDFSKPIQEVLIEM----   94 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHHHH----TCSEEECGGGCSSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHHHh----CCcEEEeCCchhhHHHHHHHHH----
Confidence            446788899998876 4567777887765 57899999999988877754    4332111111  1222232222    


Q ss_pred             cCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           92 ENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                       .+..+|+||-..   .....++.+..++++||.+++
T Consensus        95 -~~~g~D~vid~~---G~~~~~~~~~~~~~~g~~~~~  127 (176)
T d2fzwa2          95 -TDGGVDYSFECI---GNVKVMRAALEACHKGWGVSV  127 (176)
T ss_dssp             -TTSCBSEEEECS---CCHHHHHHHHHTBCTTTCEEE
T ss_pred             -cCCCCcEeeecC---CCHHHHHHHHHhhcCCceeEE
Confidence             246799888643   234577788899999876654

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.75  E-value=0.00089  Score=49.54  Aligned_cols=56  Identities=9%  Similarity=0.016  Sum_probs=45.0

Q ss_pred             HHHHHHHH--HcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc
Q 029803            9 QLMAMLLR--LVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA   67 (187)
Q Consensus         9 ~ll~~l~~--~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~   67 (187)
                      +|+..++.  ..++..|||..+|+|.++......   +.+.+++|++++.++.|++++...
T Consensus       238 ~L~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~l---gR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         238 KLPEFFIRMLTEPDDLVVDIFGGSNTTGLVAERE---SRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             HHHHHHHHHHCCTTCEEEETTCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             HHHHHhhhhcccCCCEEEecCCCCcHHHHHHHHc---CCcEEEEeCCHHHHHHHHHHHHhc
Confidence            45666665  346789999999999988766554   679999999999999999887543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.65  E-value=0.0044  Score=41.97  Aligned_cols=100  Identities=14%  Similarity=0.289  Sum_probs=63.4

Q ss_pred             HHHcCCCEEEEEcccc-cHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEc---chH-HHHHHHhh
Q 029803           15 LRLVNAKKTIEIGVFT-GYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIES---EAL-SVLDQLLK   89 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~-G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~-~~~~~~~~   89 (187)
                      .+.+++.+||-+|+|. |.+++.+++... ..+|+++|.+++..+.+++.    +..  ..+...   +.. ......  
T Consensus        24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~~----Ga~--~~i~~~~~~~~~~~~~~~~--   94 (176)
T d2jhfa2          24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKEV----GAT--ECVNPQDYKKPIQEVLTEM--   94 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT----TCS--EEECGGGCSSCHHHHHHHH--
T ss_pred             hCCCCCCEEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHHh----CCe--eEEecCCchhHHHHHHHHH--
Confidence            3466778999999864 456666777665 67999999999998888765    322  122111   212 222222  


Q ss_pred             cccCCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEEe
Q 029803           90 YSENEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVYD  129 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~~  129 (187)
                         ..+.+|++|-..   .....++.+...++++ |.+++-
T Consensus        95 ---~~~G~D~vid~~---G~~~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          95 ---SNGGVDFSFEVI---GRLDTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             ---TTSCBSEEEECS---CCHHHHHHHHHHBCTTTCEEEEC
T ss_pred             ---hcCCCCEEEecC---CchhHHHHHHHHHhcCCcceEEe
Confidence               246899887653   3345667777788776 566653

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.62  E-value=0.0035  Score=42.74  Aligned_cols=105  Identities=10%  Similarity=0.056  Sum_probs=67.1

Q ss_pred             HHHHHHHcCCCEEEEEccc--ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803           11 MAMLLRLVNAKKTIEIGVF--TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus        11 l~~l~~~~~~~~vLeiG~g--~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      |....+.+++++||-.|++  .|..++.+++..  +++|+++.-+++..+.+++    .+...-+.....+..+......
T Consensus        21 l~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~--Ga~vi~~~~~~~~~~~~~~----~Ga~~vi~~~~~~~~~~~~~~~   94 (182)
T d1v3va2          21 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLK--GCKVVGAAGSDEKIAYLKQ----IGFDAAFNYKTVNSLEEALKKA   94 (182)
T ss_dssp             HHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH----TTCSEEEETTSCSCHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEeCCCchhHHHHHHHHcc--CCEEEEeCCCHHHHHHHHh----hhhhhhcccccccHHHHHHHHh
Confidence            3344456678899988875  456778888875  5799999988876665554    3433212222222233222221


Q ss_pred             hcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           89 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                          ....+|+||=..    -.+.++.+++.|+++|.++.-
T Consensus        95 ----~~~Gvd~v~D~v----G~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          95 ----SPDGYDCYFDNV----GGEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             ----CTTCEEEEEESS----CHHHHHHHGGGEEEEEEEEEC
T ss_pred             ----hcCCCceeEEec----CchhhhhhhhhccCCCeEEee
Confidence                246799876432    245778899999999999874

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.50  E-value=0.0064  Score=40.62  Aligned_cols=87  Identities=13%  Similarity=-0.014  Sum_probs=55.6

Q ss_pred             EEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEE
Q 029803           22 KTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYA  100 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i  100 (187)
                      +|.=||+|  ..+..+|..+ ..+.+|+++|.+++.++.+++.    +..+   ....+. +   .       -...|+|
T Consensus         2 kI~iIG~G--~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~----~~~~---~~~~~~-~---~-------~~~~DiI   61 (165)
T d2f1ka2           2 KIGVVGLG--LIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER----QLVD---EAGQDL-S---L-------LQTAKII   61 (165)
T ss_dssp             EEEEECCS--HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TSCS---EEESCG-G---G-------GTTCSEE
T ss_pred             EEEEEeec--HHHHHHHHHHHHCCCEEEEEECCchHHHHHHHh----hccc---eeeeec-c---c-------ccccccc
Confidence            57778775  4443344333 1267999999998877766543    3221   112222 1   1       1578999


Q ss_pred             EEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803          101 FVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus       101 ~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+..........++++.+.++++.+++-
T Consensus        62 ilavp~~~~~~vl~~l~~~l~~~~iv~~   89 (165)
T d2f1ka2          62 FLCTPIQLILPTLEKLIPHLSPTAIVTD   89 (165)
T ss_dssp             EECSCHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             cccCcHhhhhhhhhhhhhhcccccceee
Confidence            9977666677888888889999887754

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.36  E-value=0.0019  Score=46.69  Aligned_cols=107  Identities=10%  Similarity=0.035  Sum_probs=75.1

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC---CC------------------------------------CCEEEEEeCCcchHHH
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI---PE------------------------------------DGQITAIDVNRETYEI   59 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~---~~------------------------------------~~~v~~iD~~~~~~~~   59 (187)
                      .+..++|-.||+|.+.++.|...   ++                                    ..++++.|.++++++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            45579999999999998877532   10                                    1246788888888888


Q ss_pred             H---HHHHHhcCCCCcEEEEEcchHHHH--HHHhhcccCCCceeEEEEeCCC------------cccHHHHHHHHhccCC
Q 029803           60 G---LPIIKKAGVDHKINFIESEALSVL--DQLLKYSENEGSFDYAFVDADK------------DNYCNYHERLMKLLKV  122 (187)
Q Consensus        60 a---~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~~~~~~~D~i~~d~~~------------~~~~~~~~~~~~~L~~  122 (187)
                      |   ++|+...++...+++.+.|.++.-  ..+.    ....+++|+++...            +.+..+...+.+.++.
T Consensus       130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~----~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~  205 (249)
T d1o9ga_         130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVL----AGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPA  205 (249)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHH----TTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHHHHHcCCCceeeeeecchhccCcchhcc----CCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCC
Confidence            8   568999999989999999986421  2221    13567999998521            1244556666677877


Q ss_pred             CeEEEEe
Q 029803          123 GGIAVYD  129 (187)
Q Consensus       123 gG~lv~~  129 (187)
                      ..++++.
T Consensus       206 ~s~~~it  212 (249)
T d1o9ga_         206 HAVIAVT  212 (249)
T ss_dssp             TCEEEEE
T ss_pred             CcEEEEe
Confidence            7777774

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.34  E-value=0.013  Score=39.98  Aligned_cols=104  Identities=12%  Similarity=0.082  Sum_probs=65.9

Q ss_pred             HHHHHcCC--CEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHh
Q 029803           13 MLLRLVNA--KKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLL   88 (187)
Q Consensus        13 ~l~~~~~~--~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~   88 (187)
                      ...+.+++  ++||-.|  .|.|..++.+|+... ..+|+++..+++......   ...+...-+.....+..+.+... 
T Consensus        22 ~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~G-a~~vi~~~~~~e~~~~l~---~~~gad~vi~~~~~~~~~~~~~~-   96 (187)
T d1vj1a2          22 EKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLG-CSRVVGICGTQEKCLFLT---SELGFDAAVNYKTGNVAEQLREA-   96 (187)
T ss_dssp             HHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTT-CSEEEEEESSHHHHHHHH---HHSCCSEEEETTSSCHHHHHHHH-
T ss_pred             HHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcC-CcceecccchHHHHhhhh---hcccceEEeeccchhHHHHHHHH-
Confidence            33344544  6799877  568889999999875 456777776655444332   23454433333334455555554 


Q ss_pred             hcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           89 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                          .+..+|+|| |..-   ...++..++.|+++|.++.-
T Consensus        97 ----~~~GvDvv~-D~vG---g~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2          97 ----CPGGVDVYF-DNVG---GDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             ----CTTCEEEEE-ESSC---HHHHHHHHTTEEEEEEEEEC
T ss_pred             ----hccCceEEE-ecCC---chhHHHHhhhccccccEEEe
Confidence                245799886 4322   45678899999999999874

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=96.28  E-value=0.075  Score=38.96  Aligned_cols=110  Identities=8%  Similarity=0.008  Sum_probs=69.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCC--CcEEEEEcchHH-HHHHHhhcccCCC
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALS-VLDQLLKYSENEG   95 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~-~~~~~~~~~~~~~   95 (187)
                      .++.|+.+|||.-.-...+  ..+++.+++-+|. |+.++.-++.+...+..  .+..++..|..+ ....+...+....
T Consensus        89 g~~qvV~LGaGlDTr~~Rl--~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~  165 (297)
T d2uyoa1          89 GIRQFVILASGLDSRAYRL--DWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPS  165 (297)
T ss_dssp             TCCEEEEETCTTCCHHHHS--CCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTT
T ss_pred             CCCeEEEeCcccCChhhhc--CCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCC
Confidence            5677888998666544333  2344678888885 88888888888876543  456777777654 3333332211122


Q ss_pred             ceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           96 SFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        96 ~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      ..-+++..+     ..+.....++.+..+..||+.|+++-.
T Consensus       166 ~ptl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~~  206 (297)
T d2uyoa1         166 ARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETS  206 (297)
T ss_dssp             SCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CCEEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEec
Confidence            333444443     234456788888899999999999744

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=96.24  E-value=0.0048  Score=42.35  Aligned_cols=108  Identities=12%  Similarity=0.099  Sum_probs=64.7

Q ss_pred             HHHcCCCEEEEE--cc-cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc---hHHHHHHHh
Q 029803           15 LRLVNAKKTIEI--GV-FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE---ALSVLDQLL   88 (187)
Q Consensus        15 ~~~~~~~~vLei--G~-g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d---~~~~~~~~~   88 (187)
                      .+..++.++|-+  |+ |.|..++.+|+..  +.+++++--+++..+...+.++..|....+..-..+   ..+....+.
T Consensus        24 ~~~~~g~~vli~~ga~g~vG~~aiqlAk~~--Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~  101 (189)
T d1gu7a2          24 VKLTPGKDWFIQNGGTSAVGKYASQIGKLL--NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWI  101 (189)
T ss_dssp             SCCCTTTCEEEESCTTSHHHHHHHHHHHHH--TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHH
T ss_pred             hCCCCCCEEEEEeCCCchHHHHHHHHHhhc--CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHH
Confidence            345566777777  32 3567888899886  578888766666666666666777755322211111   111222211


Q ss_pred             hcccCCCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeC
Q 029803           89 KYSENEGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        89 ~~~~~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      ..  ....+|++| |..   -...++.+++.|+++|.++...
T Consensus       102 ~~--~g~~vdvv~-D~v---g~~~~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         102 KQ--SGGEAKLAL-NCV---GGKSSTGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             HH--HTCCEEEEE-ESS---CHHHHHHHHHTSCTTCEEEECC
T ss_pred             hh--ccCCceEEE-ECC---CcchhhhhhhhhcCCcEEEEEC
Confidence            10  145789777 432   2345677889999999998753

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.16  E-value=0.0095  Score=40.07  Aligned_cols=102  Identities=14%  Similarity=0.215  Sum_probs=60.6

Q ss_pred             HHHcCCCEEEEEccccc-HHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcc-hHHHHHHHhhccc
Q 029803           15 LRLVNAKKTIEIGVFTG-YSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESE-ALSVLDQLLKYSE   92 (187)
Q Consensus        15 ~~~~~~~~vLeiG~g~G-~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~   92 (187)
                      .+.+++.+|+-+|+|.+ ..+..+++... ..+|+++|.+++.++.+++.    |...-+.....+ ..+......    
T Consensus        24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~~----GAd~~in~~~~~~~~~~~~~~~----   94 (175)
T d1cdoa2          24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKVF----GATDFVNPNDHSEPISQVLSKM----   94 (175)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHT----TCCEEECGGGCSSCHHHHHHHH----
T ss_pred             hCCCCCCEEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHHc----CCcEEEcCCCcchhHHHHHHhh----
Confidence            34667789999998874 45555666554 67899999999988877753    433211111111 112111111    


Q ss_pred             CCCceeEEEEeCCCcccHHHHHHHHhccCCC-eEEEE
Q 029803           93 NEGSFDYAFVDADKDNYCNYHERLMKLLKVG-GIAVY  128 (187)
Q Consensus        93 ~~~~~D~i~~d~~~~~~~~~~~~~~~~L~~g-G~lv~  128 (187)
                      .+..+|.++-...   ....++.+..+++++ +++++
T Consensus        95 ~~~G~d~vid~~G---~~~~~~~a~~~~~~g~~~~~~  128 (175)
T d1cdoa2          95 TNGGVDFSLECVG---NVGVMRNALESCLKGWGVSVL  128 (175)
T ss_dssp             HTSCBSEEEECSC---CHHHHHHHHHTBCTTTCEEEE
T ss_pred             ccCCcceeeeecC---CHHHHHHHHHHhhCCCcceeE
Confidence            1467998876542   344566677776665 55554

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.064  Score=38.34  Aligned_cols=84  Identities=11%  Similarity=0.034  Sum_probs=58.6

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhh
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLK   89 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~   89 (187)
                      ..+++.+|-.|++.|. +..+++.+ ..+.+|+.++.+++.++.+.+.+...+...++..+++|..+      .+.....
T Consensus         7 ~lk~Kv~lITGas~GI-G~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~   85 (257)
T d1xg5a_           7 RWRDRLALVTGASGGI-GAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRS   85 (257)
T ss_dssp             GGTTCEEEEESTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            3578899999987663 33333333 23789999999999999998888887766778888988743      2222221


Q ss_pred             cccCCCceeEEEEeC
Q 029803           90 YSENEGSFDYAFVDA  104 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~  104 (187)
                      .   .+++|.++..+
T Consensus        86 ~---~g~iD~lVnnA   97 (257)
T d1xg5a_          86 Q---HSGVDICINNA   97 (257)
T ss_dssp             H---HCCCSEEEECC
T ss_pred             h---cCCCCEEEecc
Confidence            1   36799888664

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.94  E-value=0.028  Score=35.88  Aligned_cols=93  Identities=15%  Similarity=0.140  Sum_probs=58.8

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029803           21 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   97 (187)
                      ++|+-+|+  |..+..+++.+. .+..|+.+|.+++.++.+++.+       ...+++||+.+  .+...     .-...
T Consensus         1 M~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~-----~i~~a   66 (132)
T d1lssa_           1 MYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDA-----GIEDA   66 (132)
T ss_dssp             CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHT-----TTTTC
T ss_pred             CEEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhc-----Chhhh
Confidence            35777665  888888777663 3578999999999887665432       26688899864  44443     23578


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEE
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAV  127 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv  127 (187)
                      |.+++-.......-......+.+.+.-+++
T Consensus        67 ~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          67 DMYIAVTGKEEVNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             SEEEECCSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred             hhhcccCCcHHHHHHHHHHHHHcCCceEEE
Confidence            888764333222223344446677775554

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=95.90  E-value=0.0085  Score=46.07  Aligned_cols=53  Identities=13%  Similarity=0.103  Sum_probs=43.9

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCcchHHHHHHHHHhcCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNRETYEIGLPIIKKAGV   69 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~   69 (187)
                      ..+...++|||+..|.++..++...+. ..+|+++|++|...+..+++++.+..
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            346678999999999999888776542 46999999999999999999886553

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.70  E-value=0.036  Score=37.08  Aligned_cols=97  Identities=10%  Similarity=0.059  Sum_probs=60.2

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhc--CCCCcEE----EEEcchHHHHHHHhhcccC
Q 029803           21 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKA--GVDHKIN----FIESEALSVLDQLLKYSEN   93 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~--~~~~~~~----~~~~d~~~~~~~~~~~~~~   93 (187)
                      ++|--||+|.-..+  +|..+. .+..|+.+|.+++.++..++.-...  .......    ....|..+.+         
T Consensus         2 k~iaIiGaG~~G~~--~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---------   70 (184)
T d1bg6a2           2 KTYAVLGLGNGGHA--FAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV---------   70 (184)
T ss_dssp             CEEEEECCSHHHHH--HHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH---------
T ss_pred             CEEEEECccHHHHH--HHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHh---------
Confidence            57788888654333  332221 2679999999998877666542110  0001111    2223333322         


Q ss_pred             CCceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           94 EGSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        94 ~~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                       ...|+|++..........++++.+.++++..+++.
T Consensus        71 -~~aD~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~  105 (184)
T d1bg6a2          71 -KDADVILIVVPAIHHASIAANIASYISEGQLIILN  105 (184)
T ss_dssp             -TTCSEEEECSCGGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             -cCCCEEEEEEchhHHHHHHHHhhhccCCCCEEEEe
Confidence             57899999776667788899999999999987763

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=95.55  E-value=0.0084  Score=42.65  Aligned_cols=51  Identities=16%  Similarity=0.265  Sum_probs=38.9

Q ss_pred             EEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-------------cc----cHHHHHHHHhccCCCeEEEEe
Q 029803           74 NFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------------DN----YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        74 ~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-------------~~----~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ++++||..+.++.+     +++++|+|+.|+..             ..    ....++++.+.|+|+|.+++.
T Consensus         6 ~i~~gDcle~l~~l-----pd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~   73 (256)
T d1g60a_           6 KIHQMNCFDFLDQV-----ENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF   73 (256)
T ss_dssp             SEEECCHHHHHHHS-----CTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEeccHHHHHhhC-----cCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence            58999999998886     36799999999632             11    123567788999999988753

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.33  E-value=0.012  Score=42.42  Aligned_cols=53  Identities=15%  Similarity=0.195  Sum_probs=40.5

Q ss_pred             cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC----------ccc----HHHHHHHHhccCCCeEEEEe
Q 029803           72 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADK----------DNY----CNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        72 ~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~----------~~~----~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +--++.+|..+.++.+     +++++|+||.|+..          ..|    ...++++.++|+|+|.+++.
T Consensus         4 ~~~~~~~D~le~l~~l-----~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~   70 (279)
T d1eg2a_           4 RHVYDVCDCLDTLAKL-----PDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF   70 (279)
T ss_dssp             EEEEEECCHHHHHHTS-----CTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cceEEechHHHHHhhC-----cCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence            3457889999998886     36899999999642          223    34567788999999988874

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.24  E-value=0.037  Score=35.16  Aligned_cols=91  Identities=10%  Similarity=0.010  Sum_probs=60.7

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCceeE
Q 029803           22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFDY   99 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~D~   99 (187)
                      +++-  ||.|..+..+++.+. +..++.+|.+++..+..++.        .+.++.||+.+  .+...     .-.+.+.
T Consensus         2 HivI--~G~g~~g~~l~~~L~-~~~i~vi~~d~~~~~~~~~~--------~~~~i~Gd~~~~~~L~~a-----~i~~A~~   65 (129)
T d2fy8a1           2 HVVI--CGWSESTLECLRELR-GSEVFVLAEDENVRKKVLRS--------GANFVHGDPTRVSDLEKA-----NVRGARA   65 (129)
T ss_dssp             CEEE--ESCCHHHHHHHHTSC-GGGEEEEESCTTHHHHHHHT--------TCEEEESCTTSHHHHHHT-----TCTTCSE
T ss_pred             EEEE--ECCCHHHHHHHHHHc-CCCCEEEEcchHHHHHHHhc--------CccccccccCCHHHHHHh-----hhhcCcE
Confidence            4566  456889999999986 67789999999977655421        36788899854  44442     2357788


Q ss_pred             EEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803          100 AFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus       100 i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      +++...........-...+.+.|...++.
T Consensus        66 vi~~~~~d~~n~~~~~~~r~~~~~~~iia   94 (129)
T d2fy8a1          66 VIVNLESDSETIHCILGIRKIDESVRIIA   94 (129)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHCSSSCEEE
T ss_pred             EEEeccchhhhHHHHHHHHHHCCCceEEE
Confidence            88754433333334445577888876665

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=95.12  E-value=0.012  Score=43.08  Aligned_cols=53  Identities=19%  Similarity=0.276  Sum_probs=40.9

Q ss_pred             cEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC-------------cc----cHHHHHHHHhccCCCeEEEEe
Q 029803           72 KINFIESEALSVLDQLLKYSENEGSFDYAFVDADK-------------DN----YCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        72 ~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~-------------~~----~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .-.+++||..+.+..+     +++++|+|+.|+..             ..    ....++++.++|+++|.++++
T Consensus        12 ~~~l~~GD~le~l~~l-----~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~   81 (320)
T d1booa_          12 NGSMYIGDSLELLESF-----PEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD   81 (320)
T ss_dssp             SEEEEESCHHHHGGGS-----CSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEehhHHHHHhhC-----ccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence            4589999999988876     36899999999632             11    134577788999999998874

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=94.96  E-value=0.17  Score=36.41  Aligned_cols=114  Identities=12%  Similarity=0.170  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHH
Q 029803            7 HGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQ   86 (187)
Q Consensus         7 ~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   86 (187)
                      ...++..+...++. .-+..-+|+-.++..++   .+.-+++.+|+.|+-.+..++++.   -..++.+.+.|..+.+..
T Consensus        71 ~~~yl~~v~~~n~~-~~l~~YPGSP~ia~~ll---R~~Drl~l~ELHp~e~~~L~~~~~---~~~~~~v~~~DG~~~l~a  143 (271)
T d2oo3a1          71 FLEYISVIKQINLN-STLSYYPGSPYFAINQL---RSQDRLYLCELHPTEYNFLLKLPH---FNKKVYVNHTDGVSKLNA  143 (271)
T ss_dssp             GHHHHHHHHHHSSS-SSCCEEECHHHHHHHHS---CTTSEEEEECCSHHHHHHHTTSCC---TTSCEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CCcCcCCCCHHHHHHhC---CCCCceEEeecCHHHHHHHHHHhc---cCCCceEEcCchHHHHHh
Confidence            34455544444333 22345566665554444   447899999999998888877653   246899999999998877


Q ss_pred             HhhcccCCCceeEEEEeCCCc---ccHHHH---HHHHhccCCCeEEEEeC
Q 029803           87 LLKYSENEGSFDYAFVDADKD---NYCNYH---ERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d~~~~---~~~~~~---~~~~~~L~~gG~lv~~~  130 (187)
                      +...   .++--+|+||...+   +|....   ..+++.-..|-+++.--
T Consensus       144 llPP---~~rRgLVLIDPpYE~k~ey~~v~~~l~~a~kr~~~g~~~iWYP  190 (271)
T d2oo3a1         144 LLPP---PEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVWYP  190 (271)
T ss_dssp             HCSC---TTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             hCCC---CCCceEEEecCCcCCHHHHHHHHHHHHHHHHhCCCceEEEEee
Confidence            6432   45667999997543   444443   33444444555555543

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.57  E-value=0.061  Score=36.30  Aligned_cols=98  Identities=8%  Similarity=0.015  Sum_probs=60.3

Q ss_pred             cCCCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           18 VNAKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        18 ~~~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      .++++||-.|.  |-|..++.+++..  +.+|+++--+++..+.+++.    +...-+. ...+..+....     ..++
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~--Ga~Viat~~s~~k~~~~~~l----Ga~~vi~-~~~~~~~~~~~-----~~~~   97 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKR--GYTVEASTGKAAEHDYLRVL----GAKEVLA-REDVMAERIRP-----LDKQ   97 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCTTCHHHHHHT----TCSEEEE-CC--------------CCSC
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHc--CCceEEecCchHHHHHHHhc----ccceeee-cchhHHHHHHH-----hhcc
Confidence            35678999885  4557888888886  68999998888888777643    4332111 11111111111     1256


Q ss_pred             ceeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCC
Q 029803           96 SFDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNT  131 (187)
Q Consensus        96 ~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~  131 (187)
                      .+|+|+=...    ...++..++.|+++|.++.-..
T Consensus        98 gvD~vid~vg----g~~~~~~l~~l~~~Griv~~G~  129 (176)
T d1xa0a2          98 RWAAAVDPVG----GRTLATVLSRMRYGGAVAVSGL  129 (176)
T ss_dssp             CEEEEEECST----TTTHHHHHHTEEEEEEEEECSC
T ss_pred             CcCEEEEcCC----chhHHHHHHHhCCCceEEEeec
Confidence            8996654322    2357778899999999987443

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.49  E-value=0.018  Score=42.61  Aligned_cols=74  Identities=16%  Similarity=0.098  Sum_probs=49.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhCCCCCE-EEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTIPEDGQ-ITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      .|.+|+|+.||.|..+.-+-.+.- +.+ +.++|+++.+.+..+.|+.      ...++.+|..+.......    ...+
T Consensus         1 ~p~kv~~lF~G~Gg~~~gl~~aG~-~~~~~~a~E~~~~a~~~~~~n~~------~~~~~~~di~~~~~~~~~----~~~~   69 (343)
T d1g55a_           1 EPLRVLELYSGVGGMHHALRESCI-PAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFD----RLSF   69 (343)
T ss_dssp             CCEEEEEETCTTCHHHHHHHHHTC-SEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHH----HHCC
T ss_pred             CCCEEEEcCcCccHHHHHHHHcCC-CCeEEEEEECCHHHHHHHHHHCC------CCCcccCchhhCCHhHcC----CCCc
Confidence            467899999999998877755421 223 6789999998888887752      245667777653222111    1368


Q ss_pred             eEEEEe
Q 029803           98 DYAFVD  103 (187)
Q Consensus        98 D~i~~d  103 (187)
                      |+++..
T Consensus        70 Dll~gg   75 (343)
T d1g55a_          70 DMILMS   75 (343)
T ss_dssp             SEEEEC
T ss_pred             cEEEee
Confidence            998765

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.10  E-value=0.29  Score=34.91  Aligned_cols=105  Identities=14%  Similarity=0.052  Sum_probs=67.3

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC--CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhcc
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIP--EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS   91 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~--~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~   91 (187)
                      +++|.=|..|++..+..+++.+.  .+.+|+.++.+++.++.+.+.++..+.  ++.++.+|..+      +...+.++ 
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~~-   78 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRKE-   78 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHHh-
Confidence            56775555455555555555442  157999999999999999888887653  47888888643      22222221 


Q ss_pred             cCCCceeEEEEeCCC-------cc----c-----------HHHHHHHHhccCCCeEEEEe
Q 029803           92 ENEGSFDYAFVDADK-------DN----Y-----------CNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        92 ~~~~~~D~i~~d~~~-------~~----~-----------~~~~~~~~~~L~~gG~lv~~  129 (187)
                        .+++|+++..+..       ..    +           ....+.++++|+++|.++.-
T Consensus        79 --~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivni  136 (275)
T d1wmaa1          79 --YGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNV  136 (275)
T ss_dssp             --HSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             --cCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence              3689998877421       00    1           12355567888999987763

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=93.97  E-value=0.046  Score=41.31  Aligned_cols=46  Identities=13%  Similarity=0.148  Sum_probs=35.5

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC------CCCEEEEEeCCcchHHHHHHHHH
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIP------EDGQITAIDVNRETYEIGLPIIK   65 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~------~~~~v~~iD~~~~~~~~a~~~~~   65 (187)
                      +.+|+|+|+|.|..+..++..+.      ...+++.+|.++...+.-++.+.
T Consensus        80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            34799999999999888776543      24579999999987776666554

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.80  E-value=0.13  Score=33.38  Aligned_cols=97  Identities=15%  Similarity=0.053  Sum_probs=58.3

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029803           21 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   97 (187)
                      .+|+-+|+  |..+..+++.+. .+..++.+|.+++......+...    ...+.++.||+.+  .+...     .-+..
T Consensus         4 nHiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~----~~~~~vi~Gd~~d~~~L~~a-----~i~~a   72 (153)
T d1id1a_           4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL----GDNADVIPGDSNDSSVLKKA-----GIDRC   72 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH----CTTCEEEESCTTSHHHHHHH-----TTTTC
T ss_pred             CEEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh----cCCcEEEEccCcchHHHHHh-----ccccC
Confidence            46777665  666666666552 25789999999875443333332    2348889999865  34443     23578


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |.+++.......-...-...+.+.|+-.++.
T Consensus        73 ~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia  103 (153)
T d1id1a_          73 RAILALSDNDADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             SEEEECSSCHHHHHHHHHHHHHHTSSSCEEE
T ss_pred             CEEEEccccHHHHHHHHHHHHHhCCCCceEE
Confidence            8888764332222233334466777766665

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.62  E-value=0.72  Score=33.95  Aligned_cols=119  Identities=13%  Similarity=0.147  Sum_probs=66.7

Q ss_pred             HHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC--------------------
Q 029803            9 QLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG--------------------   68 (187)
Q Consensus         9 ~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~--------------------   68 (187)
                      .++..++...+...|+-+|||.-.....+....+ +.+++=+|. |+.++.=++.+.+.+                    
T Consensus        86 ~~v~~Fl~~~~~~QVV~LGaG~DTr~~Rl~~~~~-~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~  163 (328)
T d1rjda_          86 AAILEFLVANEKVQVVNLGCGSDLRMLPLLQMFP-HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLI  163 (328)
T ss_dssp             HHHHHHHHHCSSEEEEEETCTTCCTHHHHHHHCT-TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEE
T ss_pred             HHHHHHHHHCCCcEEEEeCCccchHHHHhhccCC-CcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccC
Confidence            4555555566667899999988876666665544 455555565 444443333333211                    


Q ss_pred             CCCcEEEEEcchHH--HHHHHhhcccCCCceeEEEEeC-----CCcccHHHHHHHHhccCCCeEEEEe
Q 029803           69 VDHKINFIESEALS--VLDQLLKYSENEGSFDYAFVDA-----DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        69 ~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~D~i~~d~-----~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      ..++..++.+|..+  .+..+...+......-+++..+     .++.....++.+.+..+.+..++.+
T Consensus       164 ~s~~y~lv~~DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~~~~i~YE  231 (328)
T d1rjda_         164 DQGRYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWISYD  231 (328)
T ss_dssp             ECSSEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred             CCCCeEEEecCCCCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCCceEEEec
Confidence            13467888888754  2333432211122233455444     2344566777777777665555554

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=93.48  E-value=0.073  Score=38.75  Aligned_cols=95  Identities=13%  Similarity=-0.038  Sum_probs=61.4

Q ss_pred             CEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           21 KKTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      .+|||+.||.|....-+-.+   +. .+.++|+++.+.+..+.|+     +  -.++.+|..+.-..      .-...|+
T Consensus         1 mk~~~lF~G~Gg~~~gl~~a---G~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~------~~~~~dl   64 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKA---GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSD------EFPKCDG   64 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHH---TCEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGG------GSCCCSE
T ss_pred             CeEEEeCcCcCHHHHHHHHC---CCEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHh------HcccccE
Confidence            36999999999998877664   33 4568999999888887775     2  34577887664221      1357899


Q ss_pred             EEEeCCC------------cccH-HH---HHHHHhccCCCeEEEEeCCC
Q 029803          100 AFVDADK------------DNYC-NY---HERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus       100 i~~d~~~------------~~~~-~~---~~~~~~~L~~gG~lv~~~~~  132 (187)
                      ++.....            .+.. ..   +-.+.+.++| -+++++|+.
T Consensus        65 l~~g~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~P-k~~~lENV~  112 (324)
T d1dcta_          65 IIGGPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKP-IFFLAENVK  112 (324)
T ss_dssp             EEECCCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCC-SEEEEEEEG
T ss_pred             EeecccccccccccccccccccccchHHHHHHHHHhhCC-ceeeccccc
Confidence            8865321            1111 11   2234577888 477777764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.72  E-value=0.048  Score=34.69  Aligned_cols=92  Identities=15%  Similarity=0.048  Sum_probs=52.7

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCcee
Q 029803           22 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFD   98 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~D   98 (187)
                      +++-+|+  |..+..+++.+. .+..|+.+|.+++.++.+++.        ....+.+|+.+  .+...     .-...|
T Consensus         2 ~~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~--------~~~~~~gd~~~~~~l~~a-----~i~~a~   66 (134)
T d2hmva1           2 QFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY--------ATHAVIANATEENELLSL-----GIRNFE   66 (134)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT--------CSEEEECCTTCTTHHHHH-----TGGGCS
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh--------CCcceeeecccchhhhcc-----CCcccc
Confidence            4556555  677777776652 367899999999887765421        24566778754  34433     124688


Q ss_pred             EEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           99 YAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        99 ~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      .+++......-...+-.....+.+...++.
T Consensus        67 ~vi~~~~~~~~~~~~~~~~~~~~~~~~iia   96 (134)
T d2hmva1          67 YVIVAIGANIQASTLTTLLLKELDIPNIWV   96 (134)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEcCchHHhHHHHHHHHHHcCCCcEEe
Confidence            888765433222232233333444455554

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=92.61  E-value=0.13  Score=37.70  Aligned_cols=97  Identities=10%  Similarity=-0.012  Sum_probs=63.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCCCC-EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPEDG-QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..+.+|+|+.||.|..+.-+-.+   +. -+.++|+++.+.+..+.|+...        .++|..+....      ....
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~a---G~~~v~a~e~d~~a~~~~~~N~~~~--------~~~Di~~~~~~------~~~~   71 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESC---GAECVYSNEWDKYAQEVYEMNFGEK--------PEGDITQVNEK------TIPD   71 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHT---TCEEEEEECCCHHHHHHHHHHHSCC--------CBSCGGGSCGG------GSCC
T ss_pred             CCCCeEEEECccccHHHHHHHHC---CCeEEEEEeCCHHHHHHHHHHCCCC--------CcCchhcCchh------hcce
Confidence            35679999999999998887654   33 4566999999999999887421        24676553222      1357


Q ss_pred             eeEEEEeCCC---------------c-ccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           97 FDYAFVDADK---------------D-NYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~~~---------------~-~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|+++.....               . .....+-.+.+.++| -+++++|+.
T Consensus        72 ~Dll~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~kP-~~~~lENV~  122 (327)
T d2c7pa1          72 HDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKP-KVVFMENVK  122 (327)
T ss_dssp             CSEEEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHHHHHCC-SEEEEEEEG
T ss_pred             eeeeecccccchhhhhhhhcCCcccchhHHHHHHHHHhccCC-cEEecccch
Confidence            8999866311               1 111223334577888 467777764

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=92.49  E-value=0.2  Score=33.56  Aligned_cols=92  Identities=13%  Similarity=0.133  Sum_probs=59.4

Q ss_pred             CCEEEEEcc--cccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           20 AKKTIEIGV--FTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        20 ~~~vLeiG~--g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      +.+||-.|.  |.|..++.+|+.+  +.+|+++.-+++..+.+++.    +.   -.++..+-.+....+     ....+
T Consensus        32 ~~~vlV~gasGGVG~~aiQlAk~~--Ga~Via~~~~~~k~~~~~~l----Ga---d~vi~~~~~~~~~~l-----~~~~~   97 (177)
T d1o89a2          32 DGEIVVTGASGGVGSTAVALLHKL--GYQVVAVSGRESTHEYLKSL----GA---SRVLPRDEFAESRPL-----EKQVW   97 (177)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHT--TCCEEEEESCGGGHHHHHHH----TE---EEEEEGGGSSSCCSS-----CCCCE
T ss_pred             CCcEEEEEccccchHHHHHHHHHc--CCCeEEEecchhHHHHHHhh----cc---ccccccccHHHHHHH-----HhhcC
Confidence            347877663  4667889999986  68999999998887766643    32   223332221111111     23567


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEEe
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      |.+ +|..   ....+...++.|+++|.++.-
T Consensus        98 ~~v-vD~V---gg~~~~~~l~~l~~~Griv~~  125 (177)
T d1o89a2          98 AGA-IDTV---GDKVLAKVLAQMNYGGCVAAC  125 (177)
T ss_dssp             EEE-EESS---CHHHHHHHHHTEEEEEEEEEC
T ss_pred             Cee-EEEc---chHHHHHHHHHhccccceEee
Confidence            876 4643   234678899999999999884

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=92.25  E-value=0.69  Score=28.39  Aligned_cols=78  Identities=17%  Similarity=0.128  Sum_probs=52.0

Q ss_pred             CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcc--cHHHHHHHHhccC
Q 029803           44 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLK  121 (187)
Q Consensus        44 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~--~~~~~~~~~~~L~  121 (187)
                      +.+|..+|-++......+..++..|+.  +.....+..+.+..+.     ...||+|++|...+.  -.+.++++.+. .
T Consensus         1 GkrILivDD~~~~~~~l~~~L~~~g~~--v~~~a~~~~~al~~~~-----~~~~dliilD~~mp~~~G~e~~~~ir~~-~   72 (118)
T d1u0sy_           1 GKRVLIVDDAAFMRMMLKDIITKAGYE--VAGEATNGREAVEKYK-----ELKPDIVTMDITMPEMNGIDAIKEIMKI-D   72 (118)
T ss_dssp             CCEEEEECSCHHHHHHHHHHHHHTTCE--EEEEESSHHHHHHHHH-----HHCCSEEEEECSCGGGCHHHHHHHHHHH-C
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHcCCc--eEEEECCHHHHHHHHH-----hccCCEEEEecCCCCCCHHHHHHHHHHh-C
Confidence            358899999999999999999887752  3334567766666553     257999999975433  34556666433 3


Q ss_pred             CCe-EEEEe
Q 029803          122 VGG-IAVYD  129 (187)
Q Consensus       122 ~gG-~lv~~  129 (187)
                      |+- ++++.
T Consensus        73 ~~~pvi~ls   81 (118)
T d1u0sy_          73 PNAKIIVCS   81 (118)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCcEEEEE
Confidence            443 45443

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.00  E-value=1  Score=29.74  Aligned_cols=71  Identities=11%  Similarity=0.139  Sum_probs=41.6

Q ss_pred             EEEEEcccc-cHHHHHHHhhCCCCCEEEEE-eCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           22 KTIEIGVFT-GYSLLLTALTIPEDGQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        22 ~vLeiG~g~-G~~~~~la~~~~~~~~v~~i-D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      +|.-||||. |..-.......+ +.+++++ |.+++..+.   ..+..+......+ ..|..+.+.        ....|+
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~-~~~i~ai~d~~~~~~~~---~~~~~~~~~~~~~-~~~~~~ll~--------~~~iD~   69 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAP-NATISGVASRSLEKAKA---FATANNYPESTKI-HGSYESLLE--------DPEIDA   69 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCT-TEEEEEEECSSHHHHHH---HHHHTTCCTTCEE-ESSHHHHHH--------CTTCCE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCC-CCEEEEEEeCCcccccc---chhccccccceee-cCcHHHhhh--------ccccce
Confidence            577799984 544334444444 6788764 787765433   3344555443333 446655554        367899


Q ss_pred             EEEeCC
Q 029803          100 AFVDAD  105 (187)
Q Consensus       100 i~~d~~  105 (187)
                      |++...
T Consensus        70 v~I~tp   75 (184)
T d1ydwa1          70 LYVPLP   75 (184)
T ss_dssp             EEECCC
T ss_pred             eeeccc
Confidence            998643

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.90  E-value=0.49  Score=31.75  Aligned_cols=79  Identities=10%  Similarity=0.037  Sum_probs=48.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .+++++|-.|++.| .+..++..+ ..+.+|+.++.+++.++...+.+...........-..|..+ +...      -+.
T Consensus        21 l~gK~vlItGasgG-IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~------~~~   92 (191)
T d1luaa1          21 VKGKKAVVLAGTGP-VGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDAS-RAEA------VKG   92 (191)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHH-HHHH------TTT
T ss_pred             CCCCEEEEECCCHH-HHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHH-HHHH------hcC
Confidence            37899999886544 223333222 23689999999999888887777653322223333344333 3333      267


Q ss_pred             eeEEEEeC
Q 029803           97 FDYAFVDA  104 (187)
Q Consensus        97 ~D~i~~d~  104 (187)
                      .|++|..+
T Consensus        93 iDilin~A  100 (191)
T d1luaa1          93 AHFVFTAG  100 (191)
T ss_dssp             CSEEEECC
T ss_pred             cCeeeecC
Confidence            89888764

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=91.78  E-value=0.15  Score=33.92  Aligned_cols=98  Identities=16%  Similarity=0.076  Sum_probs=61.6

Q ss_pred             CCCEEEEEc--ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           19 NAKKTIEIG--VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        19 ~~~~vLeiG--~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ++.+||--|  .|-|..++.+|+.+  +++|+++.-+++..+.+++.    +...   ++.  ..+........ ...+.
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~--Ga~Viat~~s~~k~~~~~~l----Gad~---vi~--~~~~~~~~~~~-~~~~g   90 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKR--GYDVVASTGNREAADYLKQL----GASE---VIS--REDVYDGTLKA-LSKQQ   90 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHH--TCCEEEEESSSSTHHHHHHH----TCSE---EEE--HHHHCSSCCCS-SCCCC
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHc--CCceEEEecCHHHHHHHHhh----cccc---eEe--ccchhchhhhc-ccCCC
Confidence            345688777  45667888899986  58999999988887776654    4331   222  12211111000 12457


Q ss_pred             eeEEEEeCCCcccHHHHHHHHhccCCCeEEEEeCCC
Q 029803           97 FDYAFVDADKDNYCNYHERLMKLLKVGGIAVYDNTL  132 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~~~~~  132 (187)
                      +|+|+-..    -...++++++.|+++|.++.-...
T Consensus        91 vd~vid~v----gg~~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2          91 WQGAVDPV----GGKQLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             EEEEEESC----CTHHHHHHHTTEEEEEEEEECCCS
T ss_pred             ceEEEecC----cHHHHHHHHHHhccCceEEEeecc
Confidence            99776432    234677889999999999885433

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=91.73  E-value=0.64  Score=32.84  Aligned_cols=80  Identities=16%  Similarity=0.183  Sum_probs=54.1

Q ss_pred             CCCEEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhh
Q 029803           19 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLK   89 (187)
Q Consensus        19 ~~~~vLeiG~g~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~   89 (187)
                      +++.+|-.|++.|-   .+..|++   .+.+|+.+|.+++.++.+.+.+...+...++..+.+|..+      .+.....
T Consensus         3 ~gK~alITGas~GIG~aia~~la~---~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~   79 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAA---EGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE   79 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence            57888888876663   3333444   3789999999999998888877766555578888888632      2222211


Q ss_pred             cccCCCceeEEEEeC
Q 029803           90 YSENEGSFDYAFVDA  104 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~  104 (187)
                      .   .++.|.++..+
T Consensus        80 ~---~G~iDiLVnnA   91 (258)
T d1iy8a_          80 R---FGRIDGFFNNA   91 (258)
T ss_dssp             H---HSCCSEEEECC
T ss_pred             H---hCCCCEEEECC
Confidence            1   36899887653

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=91.50  E-value=0.29  Score=30.32  Aligned_cols=54  Identities=15%  Similarity=0.111  Sum_probs=38.3

Q ss_pred             HHHHcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeC--------CcchHHHHHHHHHhcCC
Q 029803           14 LLRLVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDV--------NRETYEIGLPIIKKAGV   69 (187)
Q Consensus        14 l~~~~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~--------~~~~~~~a~~~~~~~~~   69 (187)
                      +.....|++|+-||+  |+.++.+|..+. .+.+|+.++.        +++..+.+++.+++.+.
T Consensus        16 ~~~l~~p~~v~IiGg--G~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~gV   78 (117)
T d1onfa2          16 FFNIKESKKIGIVGS--GYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDMKKNNI   78 (117)
T ss_dssp             HTTCCCCSEEEEECC--SHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTC
T ss_pred             HhccCCCCEEEEECC--chHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHHHHhCCC
Confidence            344567899999987  666666666552 2679999996        44556777777877664

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=1.5  Score=30.53  Aligned_cols=78  Identities=14%  Similarity=0.109  Sum_probs=53.7

Q ss_pred             CCCEEEEEcccccH---HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhh
Q 029803           19 NAKKTIEIGVFTGY---SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLK   89 (187)
Q Consensus        19 ~~~~vLeiG~g~G~---~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~   89 (187)
                      .++.+|--|++.|-   .+..+++   .+.+|+.+|.+++.++...+.+...+  .++..+.+|..+      .++....
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~---~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~   80 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAK---LKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA   80 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHH---TTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH---CCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            56788888877663   3334444   37899999999999998888887655  468888888743      2222221


Q ss_pred             cccCCCceeEEEEeC
Q 029803           90 YSENEGSFDYAFVDA  104 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~  104 (187)
                      .   .+..|.++..+
T Consensus        81 ~---~g~idilinna   92 (244)
T d1yb1a_          81 E---IGDVSILVNNA   92 (244)
T ss_dssp             H---TCCCSEEEECC
T ss_pred             H---cCCCceeEeec
Confidence            2   46799888664

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=91.42  E-value=1.2  Score=29.24  Aligned_cols=127  Identities=13%  Similarity=0.053  Sum_probs=69.7

Q ss_pred             EEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803           23 TIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  101 (187)
Q Consensus        23 vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  101 (187)
                      |==||+  |..+..+++.+- .+.+|++.|.+++..+...+............. ..+...+....       ...+.++
T Consensus         4 IGvIGl--G~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~~~   73 (178)
T d1pgja2           4 VGVVGL--GVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKA-FETMEAFAASL-------KKPRKAL   73 (178)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE-CSCHHHHHHHB-------CSSCEEE
T ss_pred             EEEEee--hHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhh-hhhhhHHHHhc-------ccceEEE
Confidence            334554  666666666552 257899999998877766655433222233332 23333443332       3344444


Q ss_pred             EeC-CCcccHHHHHHHHhccCCCeEEEEeCCCCCccccCCCCCCCCCcccchHHHHHHHHHHhhcCCCeEEEeeecCCc
Q 029803          102 VDA-DKDNYCNYHERLMKLLKVGGIAVYDNTLWGGTVAVPEEQVPDHFRGSSRQAILDLNRSLADDPRVQLSHVALGDG  179 (187)
Q Consensus       102 ~d~-~~~~~~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lp~~~G  179 (187)
                      ... ........+..+...++++.+++-....                   .....+++.+.+. ...+.....|+..|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~iii~~st~-------------------~~~~~~~~~~~l~-~~~~~~ldapv~g~  132 (178)
T d1pgja2          74 ILVQAGAATDSTIEQLKKVFEKGDILVDTGNA-------------------HFKDQGRRAQQLE-AAGLRFLGMGISGG  132 (178)
T ss_dssp             ECCCCSHHHHHHHHHHHHHCCTTCEEEECCCC-------------------CHHHHHHHHHHHH-TTTCEEEEEEEESH
T ss_pred             EeecCcchhhhhhhhhhhhccccceecccCcc-------------------chhHHHHHHHHHh-hcceeEecccccCC
Confidence            333 3334455677888899998887664333                   2222556666665 34456566666443

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=91.18  E-value=0.056  Score=35.47  Aligned_cols=92  Identities=12%  Similarity=-0.031  Sum_probs=54.6

Q ss_pred             CEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCC--CcEEEEEcchHHHHHHHhhcccCCCce
Q 029803           21 KKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVD--HKINFIESEALSVLDQLLKYSENEGSF   97 (187)
Q Consensus        21 ~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~   97 (187)
                      ++|+-||+|.  .+..++..+. .+..|+.++.+++..+....    .+..  ........+..+..          ..+
T Consensus         1 MkI~IiGaG~--iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----------~~~   64 (167)
T d1ks9a2           1 MKITVLGCGA--LGQLWLTALCKQGHEVQGWLRVPQPYCSVNL----VETDGSIFNESLTANDPDFL----------ATS   64 (167)
T ss_dssp             CEEEEECCSH--HHHHHHHHHHHTTCEEEEECSSCCSEEEEEE----ECTTSCEEEEEEEESCHHHH----------HTC
T ss_pred             CEEEEECcCH--HHHHHHHHHHHCCCceEEEEcCHHHhhhhcc----ccCCccccccccccchhhhh----------ccc
Confidence            4788899864  3333333221 25689999987764432111    1111  11122223322221          479


Q ss_pred             eEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           98 DYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        98 D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      |+||+..........++.+.+.++++..++.
T Consensus        65 D~iii~vka~~~~~~~~~l~~~~~~~~~Iv~   95 (167)
T d1ks9a2          65 DLLLVTLKAWQVSDAVKSLASTLPVTTPILL   95 (167)
T ss_dssp             SEEEECSCGGGHHHHHHHHHTTSCTTSCEEE
T ss_pred             ceEEEeecccchHHHHHhhccccCcccEEee
Confidence            9999987777778889999999999886665

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.02  E-value=0.67  Score=33.00  Aligned_cols=82  Identities=27%  Similarity=0.279  Sum_probs=55.3

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHH------HHHHHhhc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS------VLDQLLKY   90 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~------~~~~~~~~   90 (187)
                      +++++|-.|++.| .+..++..+ ..+.+|+.+|.+++.++.+.+.+...+.. .++..+.+|..+      .+......
T Consensus         3 ~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            5788888887666 333333333 23789999999999999998888877654 568889988633      22222211


Q ss_pred             ccCCCceeEEEEeC
Q 029803           91 SENEGSFDYAFVDA  104 (187)
Q Consensus        91 ~~~~~~~D~i~~d~  104 (187)
                         .++.|.++..+
T Consensus        82 ---~G~iDilVnnA   92 (274)
T d1xhla_          82 ---FGKIDILVNNA   92 (274)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---cCCceEEEeec
Confidence               36889888653

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.64  Score=32.69  Aligned_cols=82  Identities=17%  Similarity=0.157  Sum_probs=53.7

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhcc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS   91 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~   91 (187)
                      +++.+|-.|++.| .+..++..+ ..+.+|+.+|.+++.++.+.+.+.......++.++.+|..+      .+...... 
T Consensus         2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-   79 (254)
T d2gdza1           2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH-   79 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH-
Confidence            4678888887655 334444433 23789999999999888887777654334578888888643      22222111 


Q ss_pred             cCCCceeEEEEeC
Q 029803           92 ENEGSFDYAFVDA  104 (187)
Q Consensus        92 ~~~~~~D~i~~d~  104 (187)
                        .+++|.++..+
T Consensus        80 --~G~iDilVnnA   90 (254)
T d2gdza1          80 --FGRLDILVNNA   90 (254)
T ss_dssp             --HSCCCEEEECC
T ss_pred             --cCCcCeecccc
Confidence              36899888764

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.85  E-value=0.66  Score=32.96  Aligned_cols=82  Identities=24%  Similarity=0.293  Sum_probs=55.1

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHH------HHHHHhh
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS------VLDQLLK   89 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~------~~~~~~~   89 (187)
                      .+++++|-.|++.| .+..+++.+ ..+.+|+.+|.+++.++.+.+.+...+.. .++..+.+|..+      .+.....
T Consensus         3 L~gK~alVTGas~G-IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSSNG-IGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            36788888887655 333333333 23789999999999999999988876654 468889888642      2222221


Q ss_pred             cccCCCceeEEEEe
Q 029803           90 YSENEGSFDYAFVD  103 (187)
Q Consensus        90 ~~~~~~~~D~i~~d  103 (187)
                      .   .++.|.++..
T Consensus        82 ~---~g~iDilvnn   92 (272)
T d1xkqa_          82 Q---FGKIDVLVNN   92 (272)
T ss_dssp             H---HSCCCEEEEC
T ss_pred             H---hCCceEEEeC
Confidence            1   3679988865

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=90.81  E-value=1.4  Score=28.93  Aligned_cols=94  Identities=14%  Similarity=0.057  Sum_probs=54.9

Q ss_pred             EEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803           23 TIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  101 (187)
Q Consensus        23 vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  101 (187)
                      |==||.  |..+..+|..+- .+.+|++.|.+++.++...++-    .......-.....+.....       ...|.++
T Consensus         5 Ig~IGl--G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~-------~~~~~ii   71 (176)
T d2pgda2           5 IALIGL--AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANE----AKGTKVLGAHSLEEMVSKL-------KKPRRII   71 (176)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTT----TTTSSCEECSSHHHHHHHB-------CSSCEEE
T ss_pred             EEEEeE--hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhc----cccccccchhhhhhhhhhh-------cccceEE
Confidence            444555  666666666552 2578999999998777655432    1111112222333333332       5667776


Q ss_pred             EeC-CCcccHHHHHHHHhccCCCeEEEEe
Q 029803          102 VDA-DKDNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus       102 ~d~-~~~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      +.. ..+......+.+.+.+++|.+++-.
T Consensus        72 ~~~~~~~~v~~v~~~l~~~~~~g~iiid~  100 (176)
T d2pgda2          72 LLVKAGQAVDNFIEKLVPLLDIGDIIIDG  100 (176)
T ss_dssp             ECSCTTHHHHHHHHHHHHHCCTTCEEEEC
T ss_pred             EecCchHHHHHHHHHHHhccccCcEEEec
Confidence            654 3445566778888999998766643

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.35  E-value=2  Score=29.97  Aligned_cols=80  Identities=15%  Similarity=0.128  Sum_probs=54.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhcc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS   91 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~   91 (187)
                      +.+.+|-.|.+.| .+..+++.+ ..+.+|+.+|.+++.++.+.+.++..+  .++..+.+|..+      .++...+. 
T Consensus         9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~-   84 (251)
T d2c07a1           9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTE-   84 (251)
T ss_dssp             SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHh-
Confidence            5677888886555 555555544 336899999999999998888887655  358888888743      22222222 


Q ss_pred             cCCCceeEEEEeC
Q 029803           92 ENEGSFDYAFVDA  104 (187)
Q Consensus        92 ~~~~~~D~i~~d~  104 (187)
                        .+++|.++..+
T Consensus        85 --~g~iDilvnna   95 (251)
T d2c07a1          85 --HKNVDILVNNA   95 (251)
T ss_dssp             --CSCCCEEEECC
T ss_pred             --cCCceeeeecc
Confidence              47899887653

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=90.16  E-value=1.6  Score=32.95  Aligned_cols=124  Identities=14%  Similarity=0.102  Sum_probs=77.1

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      .+|.+..|=+.++.+..+...+-..+|.+..+..+...++++.+|++.+. -.......+..+++.|+  .++++...-.
T Consensus        57 ~nPT~~~LE~~la~LEg~~~a~~~~SGmaAi~~~l~~l~~~Gd~vl~~~~~Yg~t~~l~~~~~~~~Gi--~~~~~d~~d~  134 (392)
T d1gc0a_          57 SNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV--KLRHVDMADL  134 (392)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTC--EEEEECTTCH
T ss_pred             CChHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHhhccCCCeeecccccchhhhhhhhhhhccCCc--ccccCCccCH
Confidence            35777788888888888889999999998888777777776788888774 33445556666666665  2555543222


Q ss_pred             HHHHHHhhcccCCCceeEEEEeC--CCcccHHHHHHHHhccCC-CeEEEEeCCCC
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKV-GGIAVYDNTLW  133 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~--~~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  133 (187)
                      +.+....     .+.-++||+..  ++......++.+.++-+. |-.+++||++.
T Consensus       135 ~~~~~ai-----~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~a  184 (392)
T d1gc0a_         135 QALEAAM-----TPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYC  184 (392)
T ss_dssp             HHHHHHC-----CTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTT
T ss_pred             HHHHHhC-----CCCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCcc
Confidence            3333321     35678999874  222212233444444444 44566666643

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.04  E-value=0.92  Score=31.99  Aligned_cols=81  Identities=23%  Similarity=0.234  Sum_probs=54.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCC-CcEEEEEcchHH------HHHHHhhc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVD-HKINFIESEALS------VLDQLLKY   90 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~~d~~~------~~~~~~~~   90 (187)
                      +++.+|-.|++.| .+..++..+ ..+.+|+.++.+++.++.+.+.+...+.. .++..+.+|..+      .+......
T Consensus         4 ~gKvalVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSSNG-IGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            6777888776655 333334333 23789999999999999888888876654 568899988732      22222211


Q ss_pred             ccCCCceeEEEEe
Q 029803           91 SENEGSFDYAFVD  103 (187)
Q Consensus        91 ~~~~~~~D~i~~d  103 (187)
                         .++.|.++..
T Consensus        83 ---~g~iDilvnn   92 (264)
T d1spxa_          83 ---FGKLDILVNN   92 (264)
T ss_dssp             ---HSCCCEEEEC
T ss_pred             ---hCCCCEeecc
Confidence               3678988765

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=89.84  E-value=0.97  Score=31.83  Aligned_cols=81  Identities=26%  Similarity=0.342  Sum_probs=53.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   90 (187)
                      .+++.+|-.|.+.|. +..+++.+ ..+.+|+.+|.+++.++.+.+.++..+  .++..+.+|..+      .+....+.
T Consensus         3 L~gK~alITGas~GI-G~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           3 FNGKVCLVTGAGGNI-GLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            468889988876553 33333332 237899999999999999988887655  357888888642      22222211


Q ss_pred             ccCCCceeEEEEeC
Q 029803           91 SENEGSFDYAFVDA  104 (187)
Q Consensus        91 ~~~~~~~D~i~~d~  104 (187)
                         .++.|.++..+
T Consensus        80 ---~g~iDilVnna   90 (260)
T d1zema1          80 ---FGKIDFLFNNA   90 (260)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---hCCCCeehhhh
Confidence               36799888653

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.79  E-value=1.2  Score=26.45  Aligned_cols=71  Identities=18%  Similarity=0.147  Sum_probs=42.2

Q ss_pred             HcCCCEEEEEc-ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCC
Q 029803           17 LVNAKKTIEIG-VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEG   95 (187)
Q Consensus        17 ~~~~~~vLeiG-~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (187)
                      +.+.++|.=|| +|+|.+++.....- .+..|++.|.....  .. +.+...|    +.+..+...+.+          .
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~-~G~~VsGSD~~~~~--~~-~~L~~~G----i~v~~g~~~~~i----------~   66 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLN-EGYQISGSDIADGV--VT-QRLAQAG----AKIYIGHAEEHI----------E   66 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHH-HTCEEEEEESCCSH--HH-HHHHHTT----CEEEESCCGGGG----------T
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHh-CCCEEEEEeCCCCh--hh-hHHHHCC----CeEEECCccccC----------C
Confidence            34667888998 67887774322221 27899999986432  22 2333344    455555554321          4


Q ss_pred             ceeEEEEeCC
Q 029803           96 SFDYAFVDAD  105 (187)
Q Consensus        96 ~~D~i~~d~~  105 (187)
                      ..|+|+....
T Consensus        67 ~~d~vV~S~A   76 (96)
T d1p3da1          67 GASVVVVSSA   76 (96)
T ss_dssp             TCSEEEECTT
T ss_pred             CCCEEEECCC
Confidence            6788888754

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=89.60  E-value=2.3  Score=32.00  Aligned_cols=124  Identities=11%  Similarity=0.059  Sum_probs=78.0

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-cchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      .+|.+..|=+.++.+..+...+-..+|.+..+..+...++++.+|++.+.- -......+..+.+.|+.  ++++..+-.
T Consensus        61 ~nPT~~~LE~~la~LEgg~~a~~~sSGmaAi~~~l~~ll~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi~--~~~vd~~d~  138 (397)
T d1y4ia1          61 GNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGIN--VRFVDAGKP  138 (397)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTCE--EEEECTTSH
T ss_pred             CCHHHHHHHHHHHHHhCCccceeehHHHHHHHHHHhhccCCCCeeeeecccccccchhhhcccCCCceE--eeccCCCCH
Confidence            467788888888888888888888898888877777777778888887743 33445566666677753  566554433


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCC--CcccHHHHHHHHhccCC-CeEEEEeCCCC
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDAD--KDNYCNYHERLMKLLKV-GGIAVYDNTLW  133 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~--~~~~~~~~~~~~~~L~~-gG~lv~~~~~~  133 (187)
                      +.+....     .++-.+||+...  +......++.+.++-+. |-.+++|+++.
T Consensus       139 ~~~~~~i-----~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~a  188 (397)
T d1y4ia1         139 EEIRAAM-----RPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFM  188 (397)
T ss_dssp             HHHHHHC-----CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred             HHHHHhc-----CCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCccc
Confidence            4333321     356789998742  21111223334443444 45566666653

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=89.55  E-value=1.6  Score=28.67  Aligned_cols=72  Identities=15%  Similarity=0.015  Sum_probs=40.4

Q ss_pred             CCEEEEEcccccHH--HHHHHhhCCCCCEEEE-EeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           20 AKKTIEIGVFTGYS--LLLTALTIPEDGQITA-IDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        20 ~~~vLeiG~g~G~~--~~~la~~~~~~~~v~~-iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      ..+|.-||||.=..  -+......+...++++ +|.+++..+...+.+   +..    ....+..+.+.        ...
T Consensus         3 kirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~---~~~----~~~~~~~ell~--------~~~   67 (181)
T d1zh8a1           3 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV---GNP----AVFDSYEELLE--------SGL   67 (181)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH---SSC----EEESCHHHHHH--------SSC
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccc---ccc----ceeeeeecccc--------ccc
Confidence            45788899874222  1233444443357775 588877655444433   322    23356655554        367


Q ss_pred             eeEEEEeCCC
Q 029803           97 FDYAFVDADK  106 (187)
Q Consensus        97 ~D~i~~d~~~  106 (187)
                      +|+|++....
T Consensus        68 id~v~I~tp~   77 (181)
T d1zh8a1          68 VDAVDLTLPV   77 (181)
T ss_dssp             CSEEEECCCG
T ss_pred             cceeeccccc
Confidence            9999986543

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.43  E-value=1.5  Score=27.23  Aligned_cols=82  Identities=12%  Similarity=0.225  Sum_probs=50.3

Q ss_pred             CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcc--cHHHHHHHHhccCC
Q 029803           45 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV  122 (187)
Q Consensus        45 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~--~~~~~~~~~~~L~~  122 (187)
                      .||..+|-++......++.++..|+.. ++. ..|..+.+..+........+||+|++|..-+.  -.+.++++.+...+
T Consensus         2 irVLvVDD~~~~~~~l~~~L~~~g~~~-v~~-a~~g~eAl~~l~~~~~~~~~~dlillD~~mP~~dG~el~~~ir~~~~~   79 (128)
T d2r25b1           2 VKILVVEDNHVNQEVIKRMLNLEGIEN-IEL-ACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGY   79 (128)
T ss_dssp             SCEEEECSCHHHHHHHHHHHHHTTCCC-EEE-ESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCC
T ss_pred             eEEEEEeCCHHHHHHHHHHHHHcCCeE-EEE-EcChHHHHHHHHhhhhccCCCCEEEEEeCCCCCCHHHHHHHHHHccCC
Confidence            478899999999999999999888642 443 34554443332110001478999999975433  34556666544344


Q ss_pred             Ce-EEEE
Q 029803          123 GG-IAVY  128 (187)
Q Consensus       123 gG-~lv~  128 (187)
                      .- ++++
T Consensus        80 ~~piI~l   86 (128)
T d2r25b1          80 TSPIVAL   86 (128)
T ss_dssp             CSCEEEE
T ss_pred             CCeEEEE
Confidence            33 4444

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.40  E-value=2.4  Score=29.53  Aligned_cols=81  Identities=14%  Similarity=0.097  Sum_probs=50.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHH-hcCCCCcEEEEEcchHH------HHHHHhh
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALS------VLDQLLK   89 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~------~~~~~~~   89 (187)
                      .+++.+|-.|++.| .+..++..+ ..+.+|+.+|.+++.++.+.+.+. ..+  .++..+.+|..+      .++...+
T Consensus         3 l~gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (251)
T d1vl8a_           3 LRGRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKE   79 (251)
T ss_dssp             CTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHH
Confidence            36788999887665 333333332 237899999999888777666554 334  357788888642      2222221


Q ss_pred             cccCCCceeEEEEeC
Q 029803           90 YSENEGSFDYAFVDA  104 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~  104 (187)
                      .   .+++|.++..+
T Consensus        80 ~---~g~iDiLVnnA   91 (251)
T d1vl8a_          80 K---FGKLDTVVNAA   91 (251)
T ss_dssp             H---HSCCCEEEECC
T ss_pred             H---cCCCCEEEECC
Confidence            1   36899888664

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=89.06  E-value=1.5  Score=30.65  Aligned_cols=81  Identities=19%  Similarity=0.167  Sum_probs=53.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   90 (187)
                      .+++.+|-.|.+.| .+..++..+ ..+++|+.++.+++.++.+.+.++..+  .++..+.+|..+      .+......
T Consensus         9 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~   85 (255)
T d1fmca_           9 LDGKCAIITGAGAG-IGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            36788887776544 444444443 337899999999999998888888765  357888888643      12222111


Q ss_pred             ccCCCceeEEEEeC
Q 029803           91 SENEGSFDYAFVDA  104 (187)
Q Consensus        91 ~~~~~~~D~i~~d~  104 (187)
                         .++.|.++..+
T Consensus        86 ---~g~iDilvnnA   96 (255)
T d1fmca_          86 ---LGKVDILVNNA   96 (255)
T ss_dssp             ---HSSCCEEEECC
T ss_pred             ---cCCCCEeeeCC
Confidence               26799887653

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=89.03  E-value=1.5  Score=27.79  Aligned_cols=37  Identities=19%  Similarity=0.030  Sum_probs=26.5

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchH
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETY   57 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~   57 (187)
                      -++|.=|| |.|..+..+++.+. .+..|+..|.++...
T Consensus         9 ~~kI~iIG-g~G~mG~~la~~L~~~G~~V~~~d~~~~~~   46 (152)
T d2pv7a2           9 IHKIVIVG-GYGKLGGLFARYLRASGYPISILDREDWAV   46 (152)
T ss_dssp             CCCEEEET-TTSHHHHHHHHHHHTTTCCEEEECTTCGGG
T ss_pred             CCeEEEEc-CCCHHHHHHHHHHHHcCCCcEecccccccc
Confidence            35788898 45777777777663 357899999877643

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.02  E-value=2.6  Score=29.40  Aligned_cols=78  Identities=17%  Similarity=0.224  Sum_probs=48.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   90 (187)
                      .+++.+|-.|++.| .+..+++.+ ..+.+|+.+|.+++.++...+.+   +  .+..++.+|..+      .+....+.
T Consensus         4 L~gK~alITGas~G-IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~   77 (253)
T d1hxha_           4 LQGKVALVTGGASG-VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHHH
Confidence            46788888886655 334444433 23789999999988777666554   2  356777777632      22222111


Q ss_pred             ccCCCceeEEEEeC
Q 029803           91 SENEGSFDYAFVDA  104 (187)
Q Consensus        91 ~~~~~~~D~i~~d~  104 (187)
                         .++.|.++..+
T Consensus        78 ---~g~iDilVnnA   88 (253)
T d1hxha_          78 ---LGTLNVLVNNA   88 (253)
T ss_dssp             ---HCSCCEEEECC
T ss_pred             ---hCCCCeEEecc
Confidence               36889888764

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=88.75  E-value=2.6  Score=29.15  Aligned_cols=77  Identities=13%  Similarity=0.064  Sum_probs=48.4

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhcc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS   91 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~   91 (187)
                      +++.+|--|.+.| .+..+++.+ ..+.+|+.+|.+++.++...+.+.     .+...+..|..+      .++..... 
T Consensus         3 ~gK~alITGas~G-IG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~-   75 (243)
T d1q7ba_           3 EGKIALVTGASRG-IGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAE-   75 (243)
T ss_dssp             TTCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcc-
Confidence            5778888786655 333334333 237899999999988877766653     356777777632      22222222 


Q ss_pred             cCCCceeEEEEeC
Q 029803           92 ENEGSFDYAFVDA  104 (187)
Q Consensus        92 ~~~~~~D~i~~d~  104 (187)
                        .++.|.++..+
T Consensus        76 --~g~iDilVnnA   86 (243)
T d1q7ba_          76 --FGEVDILVNNA   86 (243)
T ss_dssp             --TCSCSEEEECC
T ss_pred             --cCCcceehhhh
Confidence              46899888653

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=88.72  E-value=1.6  Score=26.64  Aligned_cols=76  Identities=14%  Similarity=0.194  Sum_probs=51.1

Q ss_pred             CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc--ccHHHHHHHHhccCC
Q 029803           45 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKV  122 (187)
Q Consensus        45 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~~~~L~~  122 (187)
                      .||..+|-++......++.++..|+.  + ....+..+.+..+.     ..+||+|++|..-+  +-.++++++.+. .+
T Consensus         2 krILvVDD~~~~~~~l~~~L~~~g~~--v-~~a~~g~eal~~~~-----~~~~dlillD~~mP~~~G~el~~~lr~~-~~   72 (119)
T d1peya_           2 EKILIVDDQSGIRILLNEVFNKEGYQ--T-FQAANGLQALDIVT-----KERPDLVLLDMKIPGMDGIEILKRMKVI-DE   72 (119)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--E-EEESSHHHHHHHHH-----HHCCSEEEEESCCTTCCHHHHHHHHHHH-CT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHcCCE--E-EEeCCHHHHHHHHH-----hCCCCEEEEeccCCCCCHHHHHHHHHHh-CC
Confidence            58999999999999999999887753  3 34556666555543     25899999997543  334566666443 34


Q ss_pred             C-eEEEEe
Q 029803          123 G-GIAVYD  129 (187)
Q Consensus       123 g-G~lv~~  129 (187)
                      + -++++.
T Consensus        73 ~~pvi~lt   80 (119)
T d1peya_          73 NIRVIIMT   80 (119)
T ss_dssp             TCEEEEEE
T ss_pred             CCcEEEEe
Confidence            4 344443

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=88.58  E-value=1.8  Score=30.26  Aligned_cols=76  Identities=21%  Similarity=0.191  Sum_probs=49.5

Q ss_pred             EEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhcccCCC
Q 029803           23 TIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYSENEG   95 (187)
Q Consensus        23 vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~~~~~   95 (187)
                      +|-.|++.| .+..++..+ ..+.+|+.+|.+++.++.+.+.+...+  .++..+.+|..+      .+....+.   .+
T Consensus         4 alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~---~g   77 (255)
T d1gega_           4 ALVTGAGQG-IGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKT---LG   77 (255)
T ss_dssp             EEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH---TT
T ss_pred             EEEcCCccH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHH---hC
Confidence            455665544 444444443 237899999999999998888887765  358888888743      22222221   46


Q ss_pred             ceeEEEEeC
Q 029803           96 SFDYAFVDA  104 (187)
Q Consensus        96 ~~D~i~~d~  104 (187)
                      +.|.++..+
T Consensus        78 ~iDilVnnA   86 (255)
T d1gega_          78 GFDVIVNNA   86 (255)
T ss_dssp             CCCEEEECC
T ss_pred             CccEEEecc
Confidence            899888653

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=88.35  E-value=1.7  Score=26.53  Aligned_cols=78  Identities=6%  Similarity=0.092  Sum_probs=52.1

Q ss_pred             CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcc--cHHHHHHHHhccCC
Q 029803           45 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV  122 (187)
Q Consensus        45 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~--~~~~~~~~~~~L~~  122 (187)
                      .+|..+|-++......+..++..|+.  +. ...+..+.+..+..    ...||+|++|..-+.  -.+.++.+.+.-+.
T Consensus         3 ~rILvVdDd~~~~~~l~~~L~~~g~~--v~-~~~~~~~al~~l~~----~~~~dliilD~~lp~~~G~el~~~ir~~~~~   75 (118)
T d2b4aa1           3 FRVTLVEDEPSHATLIQYHLNQLGAE--VT-VHPSGSAFFQHRSQ----LSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQ   75 (118)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHTGGG----GGSCSEEEEETTCTTSCHHHHHHHHTTSSSC
T ss_pred             CEEEEEECCHHHHHHHHHHHHhcCCC--eE-EECCHHHHHHHHHh----cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence            58999999999999999999987752  33 34455565554432    257999999975433  44566666544333


Q ss_pred             CeEEEEe
Q 029803          123 GGIAVYD  129 (187)
Q Consensus       123 gG~lv~~  129 (187)
                      =.++++.
T Consensus        76 ~pii~lt   82 (118)
T d2b4aa1          76 PSVLILT   82 (118)
T ss_dssp             CEEEEEE
T ss_pred             CcEEEEE
Confidence            3555554

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.07  E-value=0.33  Score=32.74  Aligned_cols=38  Identities=18%  Similarity=0.202  Sum_probs=28.8

Q ss_pred             EEEEEcccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHH
Q 029803           22 KTIEIGVFTGYSLLLTALTIPEDGQITAIDVNRETYEIGL   61 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~   61 (187)
                      +|.-||.  |+.++.+|..+..+.+|+++|++++.++..+
T Consensus         2 kI~ViGl--G~vGl~~a~~~a~g~~V~g~Din~~~v~~l~   39 (196)
T d1dlja2           2 KIAVAGS--GYVGLSLGVLLSLQNEVTIVDILPSKVDKIN   39 (196)
T ss_dssp             EEEEECC--SHHHHHHHHHHTTTSEEEEECSCHHHHHHHH
T ss_pred             EEEEECC--ChhHHHHHHHHHCCCcEEEEECCHHHHHHHh
Confidence            5666764  7777777766666789999999999877665

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.76  E-value=1.3  Score=27.78  Aligned_cols=66  Identities=12%  Similarity=0.140  Sum_probs=47.2

Q ss_pred             CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcc--cHHHHHHHHh
Q 029803           44 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK  118 (187)
Q Consensus        44 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~--~~~~~~~~~~  118 (187)
                      +.+|..+|-++......++.++..|+.  +. ...+..+.+..+      .+.||+|++|..-+.  -.+..+++.+
T Consensus         7 g~rILvVDD~~~~~~~l~~~L~~~G~~--v~-~a~~g~eal~~l------~~~~dlillD~~mP~~dG~el~~~ir~   74 (134)
T d1dcfa_           7 GLKVLVMDENGVSRMVTKGLLVHLGCE--VT-TVSSNEECLRVV------SHEHKVVFMDVCMPGVENYQIALRIHE   74 (134)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHC------CTTCSEEEEECCSSTTTTTHHHHHHHH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHh------hcCCCeEEEEeccCCCchHHHHHHHHH
Confidence            579999999999999999999988852  43 455666666544      357999999975433  2344555543

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.71  E-value=0.85  Score=31.98  Aligned_cols=63  Identities=8%  Similarity=-0.050  Sum_probs=43.1

Q ss_pred             CCCEEEEEcccccHHHHHHH----hhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH
Q 029803           19 NAKKTIEIGVFTGYSLLLTA----LTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS   82 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la----~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~   82 (187)
                      +++.+|--|++.| .+..++    +...++.+|+.++.+++.++.+.+.+...+...++..+.+|..+
T Consensus         5 ~gKvalITGas~G-IG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~   71 (259)
T d1oaaa_           5 GCAVCVLTGASRG-FGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT   71 (259)
T ss_dssp             BSEEEEESSCSSH-HHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCC
Confidence            3445555565544 344444    33334789999999999999888888765555678899998743

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.57  E-value=1.9  Score=26.30  Aligned_cols=77  Identities=10%  Similarity=0.133  Sum_probs=51.6

Q ss_pred             CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc--ccHHHHHHHHhccC
Q 029803           44 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLK  121 (187)
Q Consensus        44 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~~~~L~  121 (187)
                      +.+|..+|-++...+..++.+...|+.  +. ...+..+.+..+.     ..+||+|++|...+  +...+++.+.+. .
T Consensus         1 nirILiVdDd~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~-----~~~~dlillD~~mp~~~g~~~~~~lr~~-~   71 (122)
T d1kgsa2           1 NVRVLVVEDERDLADLITEALKKEMFT--VD-VCYDGEEGMYMAL-----NEPFDVVILDIMLPVHDGWEILKSMRES-G   71 (122)
T ss_dssp             CCEEEEECSSHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHH-----HSCCSEEEEESCCSSSCHHHHHHHHHHT-T
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCE--EE-EEcchHHHHHHHH-----hhCccccccccccccchhHHHHHHHHhc-C
Confidence            358899999999999999999987753  33 4566666655543     36899999997543  334455555433 3


Q ss_pred             CC-eEEEEe
Q 029803          122 VG-GIAVYD  129 (187)
Q Consensus       122 ~g-G~lv~~  129 (187)
                      +. -++++.
T Consensus        72 ~~~piI~lt   80 (122)
T d1kgsa2          72 VNTPVLMLT   80 (122)
T ss_dssp             CCCCEEEEE
T ss_pred             CCCcEEEEc
Confidence            33 345543

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.49  E-value=1.3  Score=33.75  Aligned_cols=91  Identities=15%  Similarity=0.108  Sum_probs=52.9

Q ss_pred             CCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEEEc
Q 029803           19 NAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIES   78 (187)
Q Consensus        19 ~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~   78 (187)
                      +..+||-||+| .|...+..+...+ -++++.+|.+.                   ...+.+.+.+...+..-++..+..
T Consensus        36 ~~~kVlvvG~GglG~ei~k~L~~~G-vg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  114 (426)
T d1yovb1          36 DTCKVLVIGAGGLGCELLKNLALSG-FRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  114 (426)
T ss_dssp             HHCCEEEECSSTTHHHHHHHHHTTT-CCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred             hcCeEEEECCCHHHHHHHHHHHHcC-CCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence            44679999986 3433332222222 46889988633                   235667777776554445777777


Q ss_pred             chHHHHHHHhhcccCCCceeEEEEeCCCcccHHHHHHH
Q 029803           79 EALSVLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL  116 (187)
Q Consensus        79 d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~  116 (187)
                      +..+....+.      ..||+|+...+.......+..+
T Consensus       115 ~i~~~~~~~~------~~~DlVi~~~Dn~~aR~~in~~  146 (426)
T d1yovb1         115 KIQDFNDTFY------RQFHIIVCGLDSIIARRWINGM  146 (426)
T ss_dssp             CGGGBCHHHH------TTCSEEEECCSCHHHHHHHHHH
T ss_pred             cccchHHHHH------HhcchheeccCcHHHHHHHHHH
Confidence            6655333332      6799998765543444444333

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=87.17  E-value=2  Score=26.12  Aligned_cols=77  Identities=13%  Similarity=0.070  Sum_probs=51.2

Q ss_pred             CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcc--cHHHHHHHHhccCC
Q 029803           45 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV  122 (187)
Q Consensus        45 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~--~~~~~~~~~~~L~~  122 (187)
                      .+|..+|-++...+..++.++..|+.  +. ...+..+.+..+.     ..+||+|++|..-+.  -..+++++.+.-..
T Consensus         3 krILiVDDd~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~-----~~~~dlillD~~mp~~~G~~~~~~~r~~~~~   74 (121)
T d1mvoa_           3 KKILVVDDEESIVTLLQYNLERSGYD--VI-TASDGEEALKKAE-----TEKPDLIVLDVMLPKLDGIEVCKQLRQQKLM   74 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHH-----HHCCSEEEEESSCSSSCHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHh-----cccccEEEecccccCCCCchhhhhhhccCCC
Confidence            48999999999999999999988753  33 4556666655543     258999999975433  34455555443333


Q ss_pred             CeEEEEe
Q 029803          123 GGIAVYD  129 (187)
Q Consensus       123 gG~lv~~  129 (187)
                      --++++.
T Consensus        75 ~~ii~lt   81 (121)
T d1mvoa_          75 FPILMLT   81 (121)
T ss_dssp             CCEEEEE
T ss_pred             CEEEEEE
Confidence            3455553

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=86.99  E-value=1.4  Score=31.01  Aligned_cols=80  Identities=18%  Similarity=0.186  Sum_probs=51.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   90 (187)
                      .+++.+|-.|++.| .+..+++.+ ..+.+|+.+|.+++.++.+.+.+..   ...+.++.+|..+      .+....+.
T Consensus         4 L~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (268)
T d2bgka1           4 LQDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAK   79 (268)
T ss_dssp             TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            46788999997666 334444333 2378999999998887777666543   3457788888642      12222111


Q ss_pred             ccCCCceeEEEEeC
Q 029803           91 SENEGSFDYAFVDA  104 (187)
Q Consensus        91 ~~~~~~~D~i~~d~  104 (187)
                         .++.|.++..+
T Consensus        80 ---~g~iD~lVnnA   90 (268)
T d2bgka1          80 ---HGKLDIMFGNV   90 (268)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---cCCcceecccc
Confidence               36889888653

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=86.67  E-value=0.98  Score=26.36  Aligned_cols=81  Identities=12%  Similarity=-0.034  Sum_probs=43.9

Q ss_pred             cCCCEEEEEccc-ccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCc
Q 029803           18 VNAKKTIEIGVF-TGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGS   96 (187)
Q Consensus        18 ~~~~~vLeiG~g-~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   96 (187)
                      .++++|+-+|-| +|.++..++...  +.+|++.|..+.....  +.   .  .....+..+...+.  .+       ..
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~--g~~v~~~D~~~~~~~~--~~---~--~~~~~~~~~~~~~~--~~-------~~   64 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMTPPGL--DK---L--PEAVERHTGSLNDE--WL-------MA   64 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHT--TCCCEEEESSSSCTTG--GG---S--CTTSCEEESBCCHH--HH-------HH
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHC--CCEEEEeeCCcCchhH--HH---H--hhccceeecccchh--hh-------cc
Confidence            367889999875 555555444442  6799999975542211  11   1  12233444433221  11       46


Q ss_pred             eeEEEEeCCCcccHHHHHHH
Q 029803           97 FDYAFVDADKDNYCNYHERL  116 (187)
Q Consensus        97 ~D~i~~d~~~~~~~~~~~~~  116 (187)
                      +|+|++.+..+.....++.+
T Consensus        65 ~d~vi~SPGi~~~~~~~~~a   84 (93)
T d2jfga1          65 ADLIVASPGIALAHPSLSAA   84 (93)
T ss_dssp             CSEEEECTTSCTTSHHHHHH
T ss_pred             CCEEEECCCCCCCCHHHHHH
Confidence            89999987544333444444

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=86.56  E-value=3.6  Score=28.40  Aligned_cols=77  Identities=12%  Similarity=0.160  Sum_probs=47.2

Q ss_pred             cCCCEEEEEccc----ccH-HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHH
Q 029803           18 VNAKKTIEIGVF----TGY-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQ   86 (187)
Q Consensus        18 ~~~~~vLeiG~g----~G~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~   86 (187)
                      .+++++|-.|++    .|. .+..|++.   +.+|+..+.+++..+.+.+.....+   +..++.+|..+      .+..
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~---Ga~V~i~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~   79 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEA---GAEVALSYQAERLRPEAEKLAEALG---GALLFRADVTQDEELDALFAG   79 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHT---TCEEEEEESSGGGHHHHHHHHHHTT---CCEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHC---CCEEEEEeCcHHHHHHHHHhhhccC---cccccccccCCHHHHHHHHHH
Confidence            367899999853    443 33344442   7899999998887777766655433   35567777632      2222


Q ss_pred             HhhcccCCCceeEEEEe
Q 029803           87 LLKYSENEGSFDYAFVD  103 (187)
Q Consensus        87 ~~~~~~~~~~~D~i~~d  103 (187)
                      ..+.   .++.|.++..
T Consensus        80 ~~~~---~g~iDilVnn   93 (256)
T d1ulua_          80 VKEA---FGGLDYLVHA   93 (256)
T ss_dssp             HHHH---HSSEEEEEEC
T ss_pred             HHHh---cCCceEEEec
Confidence            2211   3679977754

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.43  E-value=1.5  Score=28.28  Aligned_cols=86  Identities=14%  Similarity=0.057  Sum_probs=48.5

Q ss_pred             EEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEE
Q 029803           23 TIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAF  101 (187)
Q Consensus        23 vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~  101 (187)
                      |==||+  |..+..+|..+ ..+.+|++.|.+++..+..++.    +    .. ...+..+..          ...|+|+
T Consensus         3 IgiIGl--G~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~----~----~~-~~~~~~e~~----------~~~d~ii   61 (161)
T d1vpda2           3 VGFIGL--GIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA----G----AE-TASTAKAIA----------EQCDVII   61 (161)
T ss_dssp             EEEECC--STTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----T----CE-ECSSHHHHH----------HHCSEEE
T ss_pred             EEEEeh--hHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHh----h----hh-hcccHHHHH----------hCCCeEE
Confidence            445666  44444455443 2257899999998876665542    2    11 233444433          3478888


Q ss_pred             EeCC-CcccHHHH---HHHHhccCCCeEEEEe
Q 029803          102 VDAD-KDNYCNYH---ERLMKLLKVGGIAVYD  129 (187)
Q Consensus       102 ~d~~-~~~~~~~~---~~~~~~L~~gG~lv~~  129 (187)
                      +... .......+   +.+.+.+++|.+++-.
T Consensus        62 ~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~   93 (161)
T d1vpda2          62 TMLPNSPHVKEVALGENGIIEGAKPGTVLIDM   93 (161)
T ss_dssp             ECCSSHHHHHHHHHSTTCHHHHCCTTCEEEEC
T ss_pred             EEcCCHHHHHHHHhCCcchhhccCCCCEEEEC
Confidence            8653 33333333   3456778887766653

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=86.25  E-value=1.1  Score=32.53  Aligned_cols=77  Identities=18%  Similarity=0.323  Sum_probs=44.9

Q ss_pred             EEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCcee
Q 029803           22 KTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSFD   98 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~D   98 (187)
                      +||-+| |+|+.+.++++.+ ..+.+|+++|.............+... ..+++++++|..+  .+.....    ..++|
T Consensus         2 KiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~----~~~~d   75 (338)
T d1udca_           2 RVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILH----DHAID   75 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHH----HTTCS
T ss_pred             EEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc-CCCCEEEEeecCCHHHHHHHHh----ccCCC
Confidence            566666 5899998888776 236789999853222212222222211 2368899999754  2333221    24789


Q ss_pred             EEEEeC
Q 029803           99 YAFVDA  104 (187)
Q Consensus        99 ~i~~d~  104 (187)
                      .||.-+
T Consensus        76 ~ViHlA   81 (338)
T d1udca_          76 TVIHFA   81 (338)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            988644

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=86.10  E-value=3.8  Score=28.17  Aligned_cols=48  Identities=15%  Similarity=0.121  Sum_probs=33.8

Q ss_pred             cCCCEEEEEcccc--c--H-HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcC
Q 029803           18 VNAKKTIEIGVFT--G--Y-SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAG   68 (187)
Q Consensus        18 ~~~~~vLeiG~g~--G--~-~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~   68 (187)
                      .+++++|-.|+++  |  . .+..|++   .+.+|+..+.+++..+.+++.....+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~---~G~~V~i~~~~~~~~~~~~~~~~~~~   55 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHR---EGAELAFTYQNDKLKGRVEEFAAQLG   55 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHH---TTCEEEEEESSTTTHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHhhcC
Confidence            4678899988754  4  2 3344444   37899999999888888777766554

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.86  E-value=0.94  Score=27.98  Aligned_cols=50  Identities=20%  Similarity=0.203  Sum_probs=36.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc--------chHHHHHHHHHhcCC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNR--------ETYEIGLPIIKKAGV   69 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~--------~~~~~a~~~~~~~~~   69 (187)
                      ..|++++-||.  |+.++.+|..+. -+.+|+.++..+        ++.+.+++.+++.|.
T Consensus        21 ~~p~~~vIiG~--G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV   79 (122)
T d1v59a2          21 EIPKRLTIIGG--GIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGL   79 (122)
T ss_dssp             SCCSEEEEECC--SHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTC
T ss_pred             cCCCeEEEECC--CchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccc
Confidence            35789999887  666666665442 267999998644        677888888888775

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.69  E-value=3.2  Score=29.65  Aligned_cols=83  Identities=10%  Similarity=0.076  Sum_probs=53.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcC---CCCcEEEEEcchHH------HHHHH
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAG---VDHKINFIESEALS------VLDQL   87 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~~d~~~------~~~~~   87 (187)
                      .+++.+|-.|++.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+....   ...++..+.+|..+      .+...
T Consensus        10 L~gKvalITGas~G-IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATG-IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            47788998887665 333333333 237899999999988887777666421   23468888888642      22222


Q ss_pred             hhcccCCCceeEEEEeC
Q 029803           88 LKYSENEGSFDYAFVDA  104 (187)
Q Consensus        88 ~~~~~~~~~~D~i~~d~  104 (187)
                      .+.   .++.|+++..+
T Consensus        89 ~~~---~G~iDiLVnnA  102 (297)
T d1yxma1          89 LDT---FGKINFLVNNG  102 (297)
T ss_dssp             HHH---HSCCCEEEECC
T ss_pred             HHH---hCCeEEEEeec
Confidence            111   36799888664

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=85.05  E-value=4.6  Score=28.41  Aligned_cols=82  Identities=15%  Similarity=0.098  Sum_probs=50.8

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHH------HHHHhhc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSV------LDQLLKY   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~------~~~~~~~   90 (187)
                      .+++++|-.|+..| .+..+++.+ ..+.+|+.+|.+++.++.+.+.+.... ..++..+.+|..+.      ...... 
T Consensus        23 l~gK~alITGas~G-IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~-   99 (294)
T d1w6ua_          23 FQGKVAFITGGGTG-LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIK-   99 (294)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHH-
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhh-
Confidence            35578888887655 444444433 237899999999988777766654322 24577888886431      112221 


Q ss_pred             ccCCCceeEEEEeC
Q 029803           91 SENEGSFDYAFVDA  104 (187)
Q Consensus        91 ~~~~~~~D~i~~d~  104 (187)
                        ..+..|.++..+
T Consensus       100 --~~g~iDilvnnA  111 (294)
T d1w6ua_         100 --VAGHPNIVINNA  111 (294)
T ss_dssp             --HTCSCSEEEECC
T ss_pred             --hccccchhhhhh
Confidence              147899887653

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.03  E-value=1.9  Score=26.32  Aligned_cols=76  Identities=12%  Similarity=0.062  Sum_probs=49.4

Q ss_pred             CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcc--cHHHHHHHHhccCC
Q 029803           45 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKV  122 (187)
Q Consensus        45 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~--~~~~~~~~~~~L~~  122 (187)
                      .+|..+|-++...+..+..++..|+.  +. ...+..+.+..+.     ..+||+|++|...+.  -..+++.+.+. ..
T Consensus         3 p~ILiVDDd~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~-----~~~~dlii~D~~mp~~~G~~~~~~~r~~-~~   73 (121)
T d1xhfa1           3 PHILIVEDELVTRNTLKSIFEAEGYD--VF-EATDGAEMHQILS-----EYDINLVIMDINLPGKNGLLLARELREQ-AN   73 (121)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTTTCE--EE-EESSHHHHHHHHH-----HSCCSEEEECSSCSSSCHHHHHHHHHHH-CC
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCE--EE-EECChHHHHHHHH-----hcCCCEEEeecccCCccCcHHHHHHHhc-CC
Confidence            48999999999999999999987752  33 4456666655553     368999999964332  23445544332 22


Q ss_pred             CeEEEEe
Q 029803          123 GGIAVYD  129 (187)
Q Consensus       123 gG~lv~~  129 (187)
                      =.+|++.
T Consensus        74 ~pii~lt   80 (121)
T d1xhfa1          74 VALMFLT   80 (121)
T ss_dssp             CEEEEEE
T ss_pred             CcEEEEE
Confidence            2355543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=85.02  E-value=4.5  Score=28.03  Aligned_cols=79  Identities=16%  Similarity=0.165  Sum_probs=51.1

Q ss_pred             CCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhccc
Q 029803           20 AKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYSE   92 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~~   92 (187)
                      ++.+|--|++.| .+..++..+ ..+.+|+.++.+++.++.+.+.++..+  .++..+.+|..+      .+....+.  
T Consensus         2 gKValITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~--   76 (257)
T d2rhca1           2 SEVALVTGATSG-IGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVER--   76 (257)
T ss_dssp             CCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH--
T ss_pred             CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHH--
Confidence            355566675544 344444433 237899999999999998888887765  358888888632      22222222  


Q ss_pred             CCCceeEEEEeC
Q 029803           93 NEGSFDYAFVDA  104 (187)
Q Consensus        93 ~~~~~D~i~~d~  104 (187)
                       .++.|.++..+
T Consensus        77 -~g~iDilVnnA   87 (257)
T d2rhca1          77 -YGPVDVLVNNA   87 (257)
T ss_dssp             -TCSCSEEEECC
T ss_pred             -hCCCCEEEecc
Confidence             46899888653

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=84.78  E-value=2.3  Score=24.69  Aligned_cols=67  Identities=10%  Similarity=0.045  Sum_probs=38.5

Q ss_pred             CEEEEEc-ccccHHHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           21 KKTIEIG-VFTGYSLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        21 ~~vLeiG-~g~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      .+|-=|| +|+|.+++.....- .+..|++.|..+..   ..+.++..|.    ++..+...+.          -...|+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~-~G~~VsGSD~~~~~---~t~~L~~~Gi----~i~~gh~~~~----------i~~~d~   63 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFS-NGNDVYGSNIEETE---RTAYLRKLGI----PIFVPHSADN----------WYDPDL   63 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHH-TTCEEEEECSSCCH---HHHHHHHTTC----CEESSCCTTS----------CCCCSE
T ss_pred             cEEEEEeECHHHHHHHHHHHHh-CCCeEEEEeCCCCh---hHHHHHHCCC----eEEeeecccc----------cCCCCE
Confidence            3455566 67787775433222 37899999987642   2224666664    3333322111          246799


Q ss_pred             EEEeCC
Q 029803          100 AFVDAD  105 (187)
Q Consensus       100 i~~d~~  105 (187)
                      |+....
T Consensus        64 vV~SsA   69 (89)
T d1j6ua1          64 VIKTPA   69 (89)
T ss_dssp             EEECTT
T ss_pred             EEEecC
Confidence            988754

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=84.71  E-value=1.1  Score=32.60  Aligned_cols=80  Identities=15%  Similarity=0.084  Sum_probs=50.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~   94 (187)
                      .++++||-.|. +|+.+.+++..+ ..+..|.++|..+......   +......++++++.+|..+  .+.....    .
T Consensus         6 ~~~KkILVTG~-tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~---~~~~~~~~~i~~~~~Dl~d~~~l~~~~~----~   77 (356)
T d1rkxa_           6 WQGKRVFVTGH-TGFKGGWLSLWLQTMGATVKGYSLTAPTVPSL---FETARVADGMQSEIGDIRDQNKLLESIR----E   77 (356)
T ss_dssp             HTTCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSCSSSSCH---HHHTTTTTTSEEEECCTTCHHHHHHHHH----H
T ss_pred             hCCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCCCccHHH---HhhhhcccCCeEEEeeccChHhhhhhhh----h
Confidence            57799999874 688888877666 2367899999866543322   2222334579999999743  2333322    2


Q ss_pred             CceeEEEEeCC
Q 029803           95 GSFDYAFVDAD  105 (187)
Q Consensus        95 ~~~D~i~~d~~  105 (187)
                      ..+|.|+..+.
T Consensus        78 ~~~~~v~~~aa   88 (356)
T d1rkxa_          78 FQPEIVFHMAA   88 (356)
T ss_dssp             HCCSEEEECCS
T ss_pred             chhhhhhhhhc
Confidence            46777776543

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

Probab=84.45  E-value=1.7  Score=26.86  Aligned_cols=68  Identities=6%  Similarity=0.046  Sum_probs=46.8

Q ss_pred             CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcc--cHHHHHHHHh
Q 029803           44 DGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMK  118 (187)
Q Consensus        44 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~--~~~~~~~~~~  118 (187)
                      ..+|..+|-++......++.++..|+.. +. ...+..+.+..+.     ..+||+|++|..-+.  -.++++.+.+
T Consensus         6 ~~kILiVDD~~~~~~~l~~~L~~~g~~~-v~-~a~~~~~al~~l~-----~~~~dlii~D~~mP~~~G~el~~~lr~   75 (129)
T d1p6qa_           6 KIKVLIVDDQVTSRLLLGDALQQLGFKQ-IT-AAGDGEQGMKIMA-----QNPHHLVISDFNMPKMDGLGLLQAVRA   75 (129)
T ss_dssp             CCCEEEECSSHHHHHHHHHHHHTTTCSC-EE-CCSSHHHHHHHHH-----TSCCSEEEECSSSCSSCHHHHHHHHTT
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCeE-EE-EECCHHHHHHHHH-----hCCCCeEEeeeecCCCChHHHHHHHHh
Confidence            5689999999999999999998877531 22 2345555555442     368999999975443  3456666543

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=84.30  E-value=1.9  Score=30.27  Aligned_cols=80  Identities=11%  Similarity=0.158  Sum_probs=52.6

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhcc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS   91 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~   91 (187)
                      +++++|-.|+..| .+..+++.+ ..+.+|+.++.+++.++.+.+.+...+.  .+.++.+|..+      .+....+. 
T Consensus         5 ~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~-   80 (258)
T d1ae1a_           5 KGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHV-   80 (258)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHH-
Confidence            6889999998655 333333332 2378999999999998888888877663  47788888643      12222211 


Q ss_pred             cCCCceeEEEEe
Q 029803           92 ENEGSFDYAFVD  103 (187)
Q Consensus        92 ~~~~~~D~i~~d  103 (187)
                       ..+..|+++..
T Consensus        81 -~~g~idilinn   91 (258)
T d1ae1a_          81 -FDGKLNILVNN   91 (258)
T ss_dssp             -TTSCCCEEEEC
T ss_pred             -hCCCcEEEecc
Confidence             13568887764

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=84.28  E-value=4.9  Score=27.84  Aligned_cols=105  Identities=13%  Similarity=0.150  Sum_probs=62.8

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEE-eCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAI-DVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   90 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~i-D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   90 (187)
                      .++.+|-.|.+ +..+..++..+ ..+.+|+.. ..+++.++.+.+.+...+.  ++..+.+|..+      .+.....+
T Consensus         5 ~GK~alITGas-~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           5 AGKVALTTGAG-RGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-CHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHHH
Confidence            56788877754 44445555444 236788764 5677778888888887663  57888888742      22222211


Q ss_pred             ccCCCceeEEEEeCCC-----------ccc-----------HHHHHHHHhccCCCeEEEEe
Q 029803           91 SENEGSFDYAFVDADK-----------DNY-----------CNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        91 ~~~~~~~D~i~~d~~~-----------~~~-----------~~~~~~~~~~L~~gG~lv~~  129 (187)
                         .+..|.++..+..           +.+           ....+.+.+.|+.+|.+++-
T Consensus        82 ---~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii  139 (259)
T d1ja9a_          82 ---FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT  139 (259)
T ss_dssp             ---HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence               3679988765321           001           12455556777777766654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.21  E-value=1.4  Score=26.75  Aligned_cols=51  Identities=24%  Similarity=0.165  Sum_probs=35.3

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcc--------hHHHHHHHHHhcCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRE--------TYEIGLPIIKKAGV   69 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~--------~~~~a~~~~~~~~~   69 (187)
                      ...|++++-||.  |+.++.+|..+. .+.+|+.++..+.        ..+..++.+++.|.
T Consensus        19 ~~~p~~v~IiGg--G~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~GI   78 (117)
T d1ebda2          19 GEVPKSLVVIGG--GYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGV   78 (117)
T ss_dssp             SSCCSEEEEECC--SHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTC
T ss_pred             hhcCCeEEEECC--CccceeeeeeecccccEEEEEEecceecccccchhHHHHHHHHHhcCC
Confidence            346789999987  666666665542 2679999996554        55666777777664

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=84.05  E-value=2.2  Score=30.31  Aligned_cols=76  Identities=16%  Similarity=0.115  Sum_probs=45.2

Q ss_pred             EEEEEcccccHHHHHHHhhC-CCCCEEEEEe-CCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCCCce
Q 029803           22 KTIEIGVFTGYSLLLTALTI-PEDGQITAID-VNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENEGSF   97 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD-~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   97 (187)
                      +||-.| |+|+.+..+.+.+ ..+.+|+++| ++........+.+..   ..+++++.+|..+  .+.....    ..++
T Consensus         2 KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~---~~~~~~i~~Di~~~~~l~~~~~----~~~~   73 (338)
T d1orra_           2 KLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLIT----KYMP   73 (338)
T ss_dssp             EEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHH----HHCC
T ss_pred             EEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhc---cCCcEEEEcccCCHHHHHHHHH----hcCC
Confidence            567444 5798888877766 3368999998 333322222222222   2468999999854  3333322    2468


Q ss_pred             eEEEEeCC
Q 029803           98 DYAFVDAD  105 (187)
Q Consensus        98 D~i~~d~~  105 (187)
                      |.||.-+.
T Consensus        74 d~Vih~aa   81 (338)
T d1orra_          74 DSCFHLAG   81 (338)
T ss_dssp             SEEEECCC
T ss_pred             ceEEeecc
Confidence            99987543

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=83.92  E-value=1.8  Score=26.47  Aligned_cols=66  Identities=15%  Similarity=0.146  Sum_probs=46.8

Q ss_pred             CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc--ccHHHHHHHHh
Q 029803           45 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK  118 (187)
Q Consensus        45 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~~~  118 (187)
                      .+|..+|-++...+..++.++..|+.  +. ...+..+.+..+.     ..+||+|++|..-+  +-.++++++.+
T Consensus         2 krILiVDD~~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~~~-----~~~~dlil~D~~mp~~dG~el~~~ir~   69 (123)
T d1mb3a_           2 KKVLIVEDNELNMKLFHDLLEAQGYE--TL-QTREGLSALSIAR-----ENKPDLILMDIQLPEISGLEVTKWLKE   69 (123)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHHTTCE--EE-EESCHHHHHHHHH-----HHCCSEEEEESBCSSSBHHHHHHHHHH
T ss_pred             ceEEEEECCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHH-----hCCCCEEEEEeccCCCcHHHHHHHHHh
Confidence            47899999999999999999988753  32 4566666655543     25799999997433  34456666654

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.87  E-value=1.5  Score=32.45  Aligned_cols=78  Identities=17%  Similarity=0.107  Sum_probs=44.9

Q ss_pred             CCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCc-----------------chHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803           20 AKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNR-----------------ETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~-----------------~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      +++||-.|. +|+.+.+++..+ ..+.+|+++|.-.                 ...+..+ ...... ..+++++.+|..
T Consensus         1 g~kILVTGa-tGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~i~~~~~Dl~   77 (393)
T d1i24a_           1 GSRVMVIGG-DGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRIS-RWKALT-GKSIELYVGDIC   77 (393)
T ss_dssp             -CEEEEETT-TSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHH-HHHHHH-CCCCEEEESCTT
T ss_pred             CCEEEEECC-CcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHH-HHHhhc-CCCcEEEEccCC
Confidence            467877775 899888887766 3367999998211                 1111111 111111 246899999975


Q ss_pred             H--HHHHHhhcccCCCceeEEEEeC
Q 029803           82 S--VLDQLLKYSENEGSFDYAFVDA  104 (187)
Q Consensus        82 ~--~~~~~~~~~~~~~~~D~i~~d~  104 (187)
                      +  .+..+..    ..++|.|+.-+
T Consensus        78 d~~~l~~~~~----~~~~d~ViHlA   98 (393)
T d1i24a_          78 DFEFLAESFK----SFEPDSVVHFG   98 (393)
T ss_dssp             SHHHHHHHHH----HHCCSEEEECC
T ss_pred             CHHHHHHHHH----hhcchheeccc
Confidence            3  3333321    14689887544

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.61  E-value=3.2  Score=29.81  Aligned_cols=82  Identities=15%  Similarity=0.137  Sum_probs=47.8

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcc----hHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcc
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRE----TYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYS   91 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~----~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~   91 (187)
                      ..+|++||-.| |+|+.+..++..+ ..+.+|+++|.-..    .++..+........ .+++++.+|..+.......  
T Consensus        13 ~~~~k~iLVTG-~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~d~~~~~~~--   88 (341)
T d1sb8a_          13 PAQPKVWLITG-VAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQW-SNFKFIQGDIRNLDDCNNA--   88 (341)
T ss_dssp             HHSCCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHH-TTEEEEECCTTSHHHHHHH--
T ss_pred             CCCCCEEEEec-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhccc-CCeeEEeeccccccccccc--
Confidence            34678888876 5899998888766 23679999995222    22222222111111 3588999998764322211  


Q ss_pred             cCCCceeEEEEeC
Q 029803           92 ENEGSFDYAFVDA  104 (187)
Q Consensus        92 ~~~~~~D~i~~d~  104 (187)
                        ....+.|+..+
T Consensus        89 --~~~~~~v~~~~   99 (341)
T d1sb8a_          89 --CAGVDYVLHQA   99 (341)
T ss_dssp             --HTTCSEEEECC
T ss_pred             --ccccccccccc
Confidence              24566666544

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=83.50  E-value=3.3  Score=28.69  Aligned_cols=80  Identities=18%  Similarity=0.178  Sum_probs=50.9

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   90 (187)
                      .+++.+|-.|.+.| .+..++..+ ..+.+|+.++.+++.++.+.+.+.   ...++.++.+|..+      .+....+.
T Consensus         4 L~gK~alVTGas~G-IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (251)
T d1zk4a1           4 LDGKVAIITGGTLG-IGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG---TPDQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---CTTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---CCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            46788888886555 333333333 237899999999988877776653   24568889988743      22222211


Q ss_pred             ccCCCceeEEEEeC
Q 029803           91 SENEGSFDYAFVDA  104 (187)
Q Consensus        91 ~~~~~~~D~i~~d~  104 (187)
                         .++.|.++..+
T Consensus        80 ---~G~iDiLVnnA   90 (251)
T d1zk4a1          80 ---FGPVSTLVNNA   90 (251)
T ss_dssp             ---HSSCCEEEECC
T ss_pred             ---hCCceEEEecc
Confidence               36899877653

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.48  E-value=5.1  Score=29.83  Aligned_cols=123  Identities=11%  Similarity=0.143  Sum_probs=73.0

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeCC-cchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      .+|.+..+=+.++.+..+...+-..+|....+. +...+.++.+|++.+.- .......++.+.+.+.  .++++..+-.
T Consensus        47 ~nPt~~~le~~la~LE~~~~a~~fsSGMaAisa-ll~ll~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi--~~~~~d~~~~  123 (380)
T d1ibja_          47 GNPTRDALESLLAKLDKADRAFCFTSGMAALSA-VTHLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGV--VVKRVNTTKL  123 (380)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTSGGGTC--EEEEECTTSH
T ss_pred             CChHHHHHHHHHHHHcCCceEEehhhHHHHHHH-HHHhhCCCCEEEEEecccccccchhhhhhccccc--cccccCcchH
Confidence            467788888888888888888888888777664 44555667888887643 3333444444555554  2555554444


Q ss_pred             HHHHHHhhcccCCCceeEEEEeC--CCcccHHHHHHHHhccCCCe-EEEEeCCCC
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGG-IAVYDNTLW  133 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~--~~~~~~~~~~~~~~~L~~gG-~lv~~~~~~  133 (187)
                      +.+....     .++..+||+..  ++......++.+.++-+..| .+++||++-
T Consensus       124 ~~~~~ai-----~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~a  173 (380)
T d1ibja_         124 DEVAAAI-----GPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIM  173 (380)
T ss_dssp             HHHHHHC-----CSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTT
T ss_pred             HHHHHHh-----ccCccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccc
Confidence            4333331     46788999873  22222223444444444444 556666653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.38  E-value=2.4  Score=25.78  Aligned_cols=50  Identities=18%  Similarity=0.169  Sum_probs=36.5

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeC--------CcchHHHHHHHHHhcCC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDV--------NRETYEIGLPIIKKAGV   69 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~--------~~~~~~~a~~~~~~~~~   69 (187)
                      ..|++++-||.  |+.++.+|..+. -+.+|+.++.        +++.....++.+++.+.
T Consensus        20 ~~p~~i~IiG~--G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv   78 (119)
T d3lada2          20 NVPGKLGVIGA--GVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGL   78 (119)
T ss_dssp             SCCSEEEEECC--SHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTE
T ss_pred             cCCCeEEEECC--ChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCc
Confidence            46789999987  777787777663 2578999885        44566777788877663

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=83.29  E-value=2.5  Score=25.74  Aligned_cols=76  Identities=14%  Similarity=0.137  Sum_probs=50.5

Q ss_pred             EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc--ccHHHHHHHHh--ccC
Q 029803           46 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMK--LLK  121 (187)
Q Consensus        46 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~~~--~L~  121 (187)
                      +|..+|-++...+..+..++..|+.  + ....+..+.+..+     ...+||+|++|..-+  +-.++++++.+  ..+
T Consensus         2 kILiVDD~~~~~~~l~~~L~~~g~~--v-~~a~~~~~al~~l-----~~~~~dlil~D~~mp~~~G~~l~~~lr~~~~~~   73 (121)
T d1zesa1           2 RILVVEDEAPIREMVCFVLEQNGFQ--P-VEAEDYDSAVNQL-----NEPWPDLILLDWMLPGGSGIQFIKHLKRESMTR   73 (121)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--E-EEECSHHHHHHHS-----SSSCCSEEEECSSCTTSCHHHHHHHHHHSTTTT
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCCE--E-EEECChHHHHHHH-----HccCCCEEEeecCCCCCCHHHHHHHHHhCccCC
Confidence            7889999999999999999987752  3 2455666666654     247899999996433  34455666643  222


Q ss_pred             CCeEEEEe
Q 029803          122 VGGIAVYD  129 (187)
Q Consensus       122 ~gG~lv~~  129 (187)
                      .--++++.
T Consensus        74 ~~pvi~lt   81 (121)
T d1zesa1          74 DIPVVMLT   81 (121)
T ss_dssp             TSCEEEEE
T ss_pred             CCeEEEEE
Confidence            22355554

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.24  E-value=5.6  Score=27.72  Aligned_cols=107  Identities=17%  Similarity=0.215  Sum_probs=62.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCC-cchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhh
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVN-RETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLK   89 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~-~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~   89 (187)
                      .+++++|-.|+..| .+..+++.+ ..+.+|+.++.+ ++.++.+.+.++..+.  ++..+.+|..+      .+.....
T Consensus        16 L~gK~~lITGas~G-IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~   92 (272)
T d1g0oa_          16 LEGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVK   92 (272)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHH
Confidence            36788888887655 333333333 236799999876 4566666666666553  57888888643      2222221


Q ss_pred             cccCCCceeEEEEeCCC-----------ccc-----------HHHHHHHHhccCCCeEEEEeC
Q 029803           90 YSENEGSFDYAFVDADK-----------DNY-----------CNYHERLMKLLKVGGIAVYDN  130 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~~-----------~~~-----------~~~~~~~~~~L~~gG~lv~~~  130 (187)
                      .   .++.|.++.....           +.+           ....+.+.+.|+.+|.+++-.
T Consensus        93 ~---~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~  152 (272)
T d1g0oa_          93 I---FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG  152 (272)
T ss_dssp             H---HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             H---hCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence            1   3678988765321           011           123555567777777666543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.04  E-value=1.8  Score=27.75  Aligned_cols=41  Identities=15%  Similarity=0.078  Sum_probs=27.8

Q ss_pred             CCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHHH
Q 029803           20 AKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGLP   62 (187)
Q Consensus        20 ~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~~   62 (187)
                      .++||-||+  |..+..+|+.+. .+.+|+.+|.+.+.++...+
T Consensus         2 ~K~IliiGa--G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~   43 (182)
T d1e5qa1           2 TKSVLMLGS--GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSA   43 (182)
T ss_dssp             CCEEEEECC--STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHT
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHh
Confidence            478888988  555555555442 25799999999886665443

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=82.80  E-value=4.3  Score=28.18  Aligned_cols=81  Identities=14%  Similarity=0.057  Sum_probs=50.6

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHH-hcCCCCcEEEEEcchHH------HHHHHhh
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIK-KAGVDHKINFIESEALS------VLDQLLK   89 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~-~~~~~~~~~~~~~d~~~------~~~~~~~   89 (187)
                      .+++++|-.|.+.| .+..+++.+ ..+.+|+.++.+++.++.+.+.+. ..+  .++..+.+|..+      .+....+
T Consensus         7 l~gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (260)
T d1h5qa_           7 FVNKTIIVTGGNRG-IGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDA   83 (260)
T ss_dssp             CTTEEEEEETTTSH-HHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence            35788888886554 334444433 237899999999887766665553 334  357888888642      2222222


Q ss_pred             cccCCCceeEEEEeC
Q 029803           90 YSENEGSFDYAFVDA  104 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~  104 (187)
                      .   .++.|.++..+
T Consensus        84 ~---~g~iDilVnnA   95 (260)
T d1h5qa_          84 D---LGPISGLIANA   95 (260)
T ss_dssp             H---SCSEEEEEECC
T ss_pred             H---hCCCcEecccc
Confidence            2   47899887654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=82.39  E-value=5.7  Score=27.22  Aligned_cols=92  Identities=12%  Similarity=0.026  Sum_probs=51.1

Q ss_pred             cCCCEEEEEcccccHH-HHHHHhhCCCCCEEEEEeCCc-------------------chHHHHHHHHHhcCCCCcEEEEE
Q 029803           18 VNAKKTIEIGVFTGYS-LLLTALTIPEDGQITAIDVNR-------------------ETYEIGLPIIKKAGVDHKINFIE   77 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~-~~~la~~~~~~~~v~~iD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~   77 (187)
                      .+..+|+-+|||.-.+ .+..+.... -++++.+|.+.                   ...+.+++++...+..-+++.+.
T Consensus        28 L~~~~VliiG~GglGs~va~~La~~G-vg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~  106 (247)
T d1jw9b_          28 LKDSRVLIVGLGGLGCAASQYLASAG-VGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVN  106 (247)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEC
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcC-CCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhh
Confidence            3567999999974332 222222223 47999998633                   34577788888766555566665


Q ss_pred             cchHH-HHHHHhhcccCCCceeEEEEeCCCcccHHHHHHH
Q 029803           78 SEALS-VLDQLLKYSENEGSFDYAFVDADKDNYCNYHERL  116 (187)
Q Consensus        78 ~d~~~-~~~~~~~~~~~~~~~D~i~~d~~~~~~~~~~~~~  116 (187)
                      ..... ....+      ...+|+++...+.......+..+
T Consensus       107 ~~~~~~~~~~~------~~~~divid~~d~~~~~~~in~~  140 (247)
T d1jw9b_         107 ALLDDAELAAL------IAEHDLVLDCTDNVAVRNQLNAG  140 (247)
T ss_dssp             SCCCHHHHHHH------HHTSSEEEECCSSHHHHHHHHHH
T ss_pred             hhhhhcccccc------ccccceeeeccchhhhhhhHHHH
Confidence            43322 22222      14678776544433333344333

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=82.35  E-value=1.1  Score=29.05  Aligned_cols=75  Identities=17%  Similarity=0.087  Sum_probs=40.7

Q ss_pred             EEEEEcccc-cHH-HHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeE
Q 029803           22 KTIEIGVFT-GYS-LLLTALTIPEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDY   99 (187)
Q Consensus        22 ~vLeiG~g~-G~~-~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~   99 (187)
                      +|.-||||. |.. -+......+ +..++.+|.+++..+...+.+   +...    ...|..+.+.         ..+|+
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~-~~~~~~~d~~~~~~~~~~~~~---~~~~----~~~~~~~ll~---------~~iD~   65 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWP-DIELVLCTRNPKVLGTLATRY---RVSA----TCTDYRDVLQ---------YGVDA   65 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTST-TEEEEEECSCHHHHHHHHHHT---TCCC----CCSSTTGGGG---------GCCSE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHhc---cccc----ccccHHHhcc---------cccce
Confidence            577889874 322 233344444 667888999887666555443   3221    1234433321         35899


Q ss_pred             EEEeCCCcccHHHH
Q 029803          100 AFVDADKDNYCNYH  113 (187)
Q Consensus       100 i~~d~~~~~~~~~~  113 (187)
                      |++...........
T Consensus        66 V~I~tp~~~H~~~~   79 (167)
T d1xeaa1          66 VMIHAATDVHSTLA   79 (167)
T ss_dssp             EEECSCGGGHHHHH
T ss_pred             eccccccccccccc
Confidence            88865443333333

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.28  E-value=1.3  Score=29.75  Aligned_cols=95  Identities=16%  Similarity=0.036  Sum_probs=57.0

Q ss_pred             CEEEEEcccccH--HHHHHHhhCCCCCEEEEEeCCcchHHHHHHHHHhc-------CCCC--------------cEEEEE
Q 029803           21 KKTIEIGVFTGY--SLLLTALTIPEDGQITAIDVNRETYEIGLPIIKKA-------GVDH--------------KINFIE   77 (187)
Q Consensus        21 ~~vLeiG~g~G~--~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~-------~~~~--------------~~~~~~   77 (187)
                      ++|--||+|+=.  ++..++.  . +.+|+.+|.+++.++.+++.++..       +...              ++.. .
T Consensus         5 kkvaViGaG~mG~~iA~~~a~--~-G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~-~   80 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAA--T-GHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-S   80 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH--T-TCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-E
T ss_pred             EEEEEECcCHHHHHHHHHHHh--C-CCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc-c
Confidence            678899997432  2333333  2 789999999999998888776531       1110              1111 1


Q ss_pred             cchHHHHHHHhhcccCCCceeEEEEeCCC--cccHHHHHHHHhccCCCeEEEEe
Q 029803           78 SEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVGGIAVYD  129 (187)
Q Consensus        78 ~d~~~~~~~~~~~~~~~~~~D~i~~d~~~--~~~~~~~~~~~~~L~~gG~lv~~  129 (187)
                      .|..+   .       -...|+|+-....  +--.+.++++.+.++++.+|..+
T Consensus        81 ~d~~~---a-------~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasn  124 (192)
T d1f0ya2          81 TDAAS---V-------VHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASN  124 (192)
T ss_dssp             SCHHH---H-------TTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEEC
T ss_pred             chhHh---h-------hcccceehhhcccchhHHHHHHHHHhhhcccCceeecc
Confidence            12111   1       2457887754321  22456788888888888777654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=82.25  E-value=0.97  Score=27.93  Aligned_cols=52  Identities=21%  Similarity=0.202  Sum_probs=37.8

Q ss_pred             HcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCC--------cchHHHHHHHHHhcCCC
Q 029803           17 LVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVN--------RETYEIGLPIIKKAGVD   70 (187)
Q Consensus        17 ~~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~--------~~~~~~a~~~~~~~~~~   70 (187)
                      ...|++++-||+  |+.++.+|..+. -+.+|+.++.+        ++..+...+.+++.|..
T Consensus        22 ~~~p~~~viiG~--G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~   82 (123)
T d1dxla2          22 SEIPKKLVVIGA--GYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMK   82 (123)
T ss_dssp             SSCCSEEEESCC--SHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCC
T ss_pred             cccCCeEEEEcc--chHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccce
Confidence            346789999887  788888776653 25799999864        45566777888877754

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=82.16  E-value=7.3  Score=29.11  Aligned_cols=124  Identities=19%  Similarity=0.148  Sum_probs=74.9

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHHHHHHHHhcCCCCcEEEEE-cch
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIE-SEA   80 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~-~d~   80 (187)
                      .+|.+..|=+.++.+..+...+-..+|.+..+..+...++++.+|++.+. -.......++.++..+.  .+.++. .+.
T Consensus        65 ~nPt~~~LE~~la~LEgg~~a~~~sSGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~t~~l~~~~~~~~gi--~~~~~~~~~~  142 (398)
T d1qgna_          65 GNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGI--TATVIDPADV  142 (398)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTC--EEEEECSSCH
T ss_pred             CChHHHHHHHHHHHHhCCceEEEecCcchHHHHHHhhcccccccccccccccchhhhhhccccccccc--ccccccccch
Confidence            36778888888888888888999888888777666666776788888773 33444555555555553  244544 333


Q ss_pred             HHHHHHHhhcccCCCceeEEEEeC--CCcccHHHHHHHHhccCCCe-EEEEeCCCC
Q 029803           81 LSVLDQLLKYSENEGSFDYAFVDA--DKDNYCNYHERLMKLLKVGG-IAVYDNTLW  133 (187)
Q Consensus        81 ~~~~~~~~~~~~~~~~~D~i~~d~--~~~~~~~~~~~~~~~L~~gG-~lv~~~~~~  133 (187)
                      .+......     .++..+||+..  ++.--...++.+.++-+..| .+++||++-
T Consensus       143 ~~~~~~~~-----~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~a  193 (398)
T d1qgna_         143 GALELALN-----QKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFA  193 (398)
T ss_dssp             HHHHHHHH-----HSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred             hhhhhhhc-----cccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceee
Confidence            33333322     25778999874  22111123444444444444 555666654

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=82.07  E-value=5.9  Score=27.15  Aligned_cols=77  Identities=12%  Similarity=0.079  Sum_probs=47.3

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   90 (187)
                      .+++.+|-.|++.| .+..+|+.+ ..+.+|+.++.+.+.++...   +..  ..++.++++|..+      .+......
T Consensus         3 l~gK~alItGas~G-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~---~~~--~~~~~~~~~Dls~~~~i~~~~~~i~~~   76 (241)
T d2a4ka1           3 LSGKTILVTGAASG-IGRAALDLFAREGASLVAVDREERLLAEAV---AAL--EAEAIAVVADVSDPKAVEAVFAEALEE   76 (241)
T ss_dssp             TTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHH---HTC--CSSEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHH---HHc--CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            46788888887755 334444443 23789999999887655433   333  3467888888642      12222111


Q ss_pred             ccCCCceeEEEEe
Q 029803           91 SENEGSFDYAFVD  103 (187)
Q Consensus        91 ~~~~~~~D~i~~d  103 (187)
                         .+++|.++..
T Consensus        77 ---~g~iDiLinn   86 (241)
T d2a4ka1          77 ---FGRLHGVAHF   86 (241)
T ss_dssp             ---HSCCCEEEEG
T ss_pred             ---hCCccEeccc
Confidence               3679988875

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=81.88  E-value=2.4  Score=29.65  Aligned_cols=81  Identities=11%  Similarity=0.090  Sum_probs=53.0

Q ss_pred             CCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhcc
Q 029803           19 NAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKYS   91 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~   91 (187)
                      +++++|-.|++.| .+..++..+ ..+.+|+.+|.+++.++.+.+.+...+  .++..+.+|..+      .+...... 
T Consensus         7 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~-   82 (259)
T d2ae2a_           7 EGCTALVTGGSRG-IGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH-   82 (259)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHH-
Confidence            6788998887655 333333333 237899999999999988888887655  357788888632      22222111 


Q ss_pred             cCCCceeEEEEeC
Q 029803           92 ENEGSFDYAFVDA  104 (187)
Q Consensus        92 ~~~~~~D~i~~d~  104 (187)
                       ...+.|+++..+
T Consensus        83 -~~~~idilvnnA   94 (259)
T d2ae2a_          83 -FHGKLNILVNNA   94 (259)
T ss_dssp             -TTTCCCEEEECC
T ss_pred             -hCCCceEEEECC
Confidence             134799888663

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=81.65  E-value=5  Score=26.09  Aligned_cols=76  Identities=9%  Similarity=0.092  Sum_probs=43.4

Q ss_pred             CCCEEEEEcccccHHHH---HHHhhCCC--CCEEEEEeCCcchHHH----HHHHHHhcCCCCcEEEEEcchHHHHHHHhh
Q 029803           19 NAKKTIEIGVFTGYSLL---LTALTIPE--DGQITAIDVNRETYEI----GLPIIKKAGVDHKINFIESEALSVLDQLLK   89 (187)
Q Consensus        19 ~~~~vLeiG~g~G~~~~---~la~~~~~--~~~v~~iD~~~~~~~~----a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~   89 (187)
                      +.-+|.-||+|+.+++.   .++...+.  ..+++.+|++++.++.    ++......+...++ ....|..+.+     
T Consensus         2 k~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~eal-----   75 (167)
T d1u8xx1           2 KSFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEF-AATTDPEEAF-----   75 (167)
T ss_dssp             CCEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEE-EEESCHHHHH-----
T ss_pred             CCceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcce-EecCChhhcc-----
Confidence            34468889998765432   23333331  2589999999987653    23333344443222 3344544432     


Q ss_pred             cccCCCceeEEEEeCC
Q 029803           90 YSENEGSFDYAFVDAD  105 (187)
Q Consensus        90 ~~~~~~~~D~i~~d~~  105 (187)
                           ...|+|++...
T Consensus        76 -----~~AD~Vvitag   86 (167)
T d1u8xx1          76 -----TDVDFVMAHIR   86 (167)
T ss_dssp             -----SSCSEEEECCC
T ss_pred             -----CCCCEEEECCC
Confidence                 56899998753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=81.59  E-value=1.6  Score=26.56  Aligned_cols=50  Identities=12%  Similarity=0.127  Sum_probs=34.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCc--------chHHHHHHHHHhcCC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNR--------ETYEIGLPIIKKAGV   69 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~--------~~~~~a~~~~~~~~~   69 (187)
                      .-|++|+-||.  |+.++.+|..+. .+.+|+.++..+        +..+.+++.+++.+.
T Consensus        19 ~~p~~vvIiGg--G~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV   77 (116)
T d1gesa2          19 ALPERVAVVGA--GYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGP   77 (116)
T ss_dssp             SCCSEEEEECC--SHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSC
T ss_pred             hCCCEEEEECC--ChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCC
Confidence            45789999887  666666665552 257999998644        455666777777664

>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=81.44  E-value=3.3  Score=25.82  Aligned_cols=65  Identities=9%  Similarity=0.017  Sum_probs=45.8

Q ss_pred             CEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcc--cHHHHHHHH
Q 029803           45 GQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLM  117 (187)
Q Consensus        45 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~--~~~~~~~~~  117 (187)
                      ++|..+|-++...+..+..++..|+.  + ....+..+.+..+.     ...||+|++|...+.  -..+++.+.
T Consensus         2 arILiVDD~~~~~~~l~~~L~~~g~~--v-~~a~~~~eal~~~~-----~~~~dlil~D~~~p~~~G~~~~~~ir   68 (139)
T d1w25a1           2 ARILVVDDIEANVRLLEAKLTAEYYE--V-STAMDGPTALAMAA-----RDLPDIILLDVMMPGMDGFTVCRKLK   68 (139)
T ss_dssp             CEEEEECSSTTHHHHHHHHHHHTTCE--E-EEESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred             CEEEEEECCHHHHHHHHHHHHHCCCE--E-EEEccchhhhhhhh-----cccceeeeeeccccCCCchHHHHHhh
Confidence            58999999999999999999987752  3 35556666655543     258999999975433  344555443

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=81.21  E-value=4.1  Score=24.80  Aligned_cols=42  Identities=19%  Similarity=0.210  Sum_probs=27.9

Q ss_pred             HHHHHHcCCCEEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcc
Q 029803           12 AMLLRLVNAKKTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRE   55 (187)
Q Consensus        12 ~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~   55 (187)
                      ...+...++++|+-||.  |..++.+|..+. .+.+|+.+|..+.
T Consensus        22 ~~~~~~~~~k~vvViGg--G~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          22 KQKTVDPEVNNVVVIGS--GYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             HHHHTCTTCCEEEEECC--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             HHHhhccCCCEEEEECC--hHHHHHHHHHhhccceEEEEEEecCc
Confidence            33444456789999876  666666665552 2578999987553

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=81.17  E-value=8.8  Score=28.57  Aligned_cols=123  Identities=11%  Similarity=0.039  Sum_probs=75.6

Q ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEcccccHHHHHHHhhCCCCCEEEEEeC-CcchHHHHHHHHHhcCCCCcEEEEEcchH
Q 029803            3 LLTIHGQLMAMLLRLVNAKKTIEIGVFTGYSLLLTALTIPEDGQITAIDV-NRETYEIGLPIIKKAGVDHKINFIESEAL   81 (187)
Q Consensus         3 ~~~~~~~ll~~l~~~~~~~~vLeiG~g~G~~~~~la~~~~~~~~v~~iD~-~~~~~~~a~~~~~~~~~~~~~~~~~~d~~   81 (187)
                      .+|.+..+=+.++.+..+...+-..+|....+..+...++++.+|++.+. -.......++.+.+.|.  .+.++..+-.
T Consensus        56 ~nPt~~~le~~la~LEg~~~a~~~~SGMaAi~~~l~~l~~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi--~~~~~d~~d~  133 (391)
T d1cl1a_          56 GTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV--TTSWFDPLIG  133 (391)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHCCTTCEEEEETTSCHHHHHHHHHTGGGGTC--EEEEECTTCG
T ss_pred             CChhHHHHHHHHHHHhCCccEEEeccccceeeehhhcccCCCCeEEEecccccchhhhhhhccccccc--ccccccCccc
Confidence            46778888888888888888999888888776666666666888888763 33445555555555554  2444442222


Q ss_pred             HHHHHHhhcccCCCceeEEEEeCC--C----cccHHHHHHHHhccCCCeEEEEeCCCC
Q 029803           82 SVLDQLLKYSENEGSFDYAFVDAD--K----DNYCNYHERLMKLLKVGGIAVYDNTLW  133 (187)
Q Consensus        82 ~~~~~~~~~~~~~~~~D~i~~d~~--~----~~~~~~~~~~~~~L~~gG~lv~~~~~~  133 (187)
                      +.+...     -.+...+|++...  +    .+.... ..+.+.-++|..+++||++-
T Consensus       134 ~~~~~~-----i~~~t~~i~~EtpsNP~l~v~Di~~i-~~~a~~~~~g~~~vVDnT~a  185 (391)
T d1cl1a_         134 ADIVKH-----LQPNTKIVFLESPGSITMEVHDVPAI-VAAVRSVVPDAIIMIDNTWA  185 (391)
T ss_dssp             GGGGGT-----CCTTEEEEEEESSCTTTCCCCCHHHH-HHHHHHHCTTCEEEEECTTT
T ss_pred             cccccc-----cccccceeeecccCcccccccccHHH-HHHHHhccCCcEEEEecccc
Confidence            222221     1356789998742  1    222222 23333345688899988864

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=81.12  E-value=4.4  Score=25.12  Aligned_cols=74  Identities=11%  Similarity=0.090  Sum_probs=49.8

Q ss_pred             EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCC--cccHHHHHHHHhccCCC
Q 029803           46 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADK--DNYCNYHERLMKLLKVG  123 (187)
Q Consensus        46 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~--~~~~~~~~~~~~~L~~g  123 (187)
                      +|..+|-++......+..++..|+.  +. ...+..+.+..+.     ..+||+|++|...  .+-.++++.+.+. .|+
T Consensus         2 kILiVDDd~~~~~~l~~~L~~~g~~--v~-~a~~~~eAl~~l~-----~~~~dlvilD~~mp~~~G~e~~~~lr~~-~~~   72 (137)
T d1ny5a1           2 NVLVIEDDKVFRGLLEEYLSMKGIK--VE-SAERGKEAYKLLS-----EKHFNVVLLDLLLPDVNGLEILKWIKER-SPE   72 (137)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHHTCE--EE-EESSHHHHHHHHH-----HSCCSEEEEESBCSSSBHHHHHHHHHHH-CTT
T ss_pred             EEEEEecCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHhh-----ccccccchHHHhhhhhhHHHHHHHHHHh-CCC
Confidence            6788999999999999999988753  43 4556666555543     3689999999643  2344566666443 344


Q ss_pred             e-EEEE
Q 029803          124 G-IAVY  128 (187)
Q Consensus       124 G-~lv~  128 (187)
                      - +|++
T Consensus        73 ~piI~l   78 (137)
T d1ny5a1          73 TEVIVI   78 (137)
T ss_dssp             SEEEEE
T ss_pred             CCEEEE
Confidence            3 4444

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=80.88  E-value=4.1  Score=24.61  Aligned_cols=75  Identities=19%  Similarity=0.002  Sum_probs=49.4

Q ss_pred             EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCcc--cHHHHHHHHhccCCC
Q 029803           46 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKDN--YCNYHERLMKLLKVG  123 (187)
Q Consensus        46 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~~--~~~~~~~~~~~L~~g  123 (187)
                      ||..+|-++......+..++..|+.  +. ...+..+.+..+.     ...||+|++|..-+.  -.++++++.+.-+.=
T Consensus         2 rILvVDDd~~~~~~l~~~L~~~G~~--v~-~a~~g~eal~~l~-----~~~~dliilD~~mP~~~G~e~~~~i~~~~~~~   73 (119)
T d2pl1a1           2 RVLVVEDNALLRHHLKVQIQDAGHQ--VD-DAEDAKEADYYLN-----EHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSL   73 (119)
T ss_dssp             EEEEECSCHHHHHHHHHHHHHTTCE--EE-EESSHHHHHHHHH-----HSCCSEEEECSCCSSSCHHHHHHHHHHTTCCS
T ss_pred             EEEEEeCCHHHHHHHHHHHHHCCCE--EE-EECCHHHHHHHHH-----hcccceeehhccCCCchhHHHHHHHHhcCccc
Confidence            6888999999999999999987752  32 4455555555443     368999999975433  345666665543222


Q ss_pred             eEEEE
Q 029803          124 GIAVY  128 (187)
Q Consensus       124 G~lv~  128 (187)
                      -++++
T Consensus        74 pvi~l   78 (119)
T d2pl1a1          74 PILVL   78 (119)
T ss_dssp             CEEEE
T ss_pred             ceEee
Confidence            34444

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.83  E-value=5.8  Score=26.32  Aligned_cols=38  Identities=13%  Similarity=0.160  Sum_probs=23.8

Q ss_pred             EEEEEcccccHHHHHHHhhCC-CCCEEEEEeCCcchHHHHH
Q 029803           22 KTIEIGVFTGYSLLLTALTIP-EDGQITAIDVNRETYEIGL   61 (187)
Q Consensus        22 ~vLeiG~g~G~~~~~la~~~~-~~~~v~~iD~~~~~~~~a~   61 (187)
                      +|--||+|  +.++.+|..+. .+.+|+++|.+++.++..+
T Consensus         2 kI~ViGlG--~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           2 RISIFGLG--YVGAVCAGCLSARGHEVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             EEEEECCS--TTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEECCC--HhHHHHHHHHHhCCCcEEEEeCCHHHHHHhc
Confidence            56677765  44444333331 2579999999988766543

>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Methylesterase CheB, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=80.72  E-value=4.6  Score=25.10  Aligned_cols=77  Identities=16%  Similarity=0.137  Sum_probs=50.7

Q ss_pred             CCEEEEEeCCcchHHHHHHHHHhcCCCCcEEE-EEcchHHHHHHHhhcccCCCceeEEEEeCCCc--ccHHHHHHHHhcc
Q 029803           44 DGQITAIDVNRETYEIGLPIIKKAGVDHKINF-IESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLL  120 (187)
Q Consensus        44 ~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~~~~L  120 (187)
                      ..+|..+|-++...+..++.++..+.  ...+ ...|..+.+..+.     ...||+|++|..-+  +-.++++.+.+. 
T Consensus         3 kirVLiVDD~~~~r~~l~~~L~~~g~--~~~v~~a~~g~~al~~~~-----~~~pDlvllDi~MP~~dG~e~~~~ir~~-   74 (140)
T d1a2oa1           3 KIRVLSVDDSALMRQIMTEIINSHSD--MEMVATAPDPLVARDLIK-----KFNPDVLTLDVEMPRMDGLDFLEKLMRL-   74 (140)
T ss_dssp             CEEEEEECSCHHHHHHHHHHHHTSTT--EEEEEEESSHHHHHHHHH-----HHCCSEEEEECCCSSSCHHHHHHHHHHS-
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHhCCC--eEEEEEECCHHHHHHHHH-----hcCCCEEEEcCCCCCCCHHHHHHHHHHh-
Confidence            35899999999999999999987652  2223 3456666555442     25899999997543  334566666544 


Q ss_pred             CCCeEEEE
Q 029803          121 KVGGIAVY  128 (187)
Q Consensus       121 ~~gG~lv~  128 (187)
                      .+.-.+++
T Consensus        75 ~~~~~i~i   82 (140)
T d1a2oa1          75 RPMPVVMV   82 (140)
T ss_dssp             SCCCEEEE
T ss_pred             CCCCcEEE
Confidence            45544444

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.59  E-value=3.3  Score=28.61  Aligned_cols=77  Identities=12%  Similarity=0.096  Sum_probs=48.2

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH--HHHHHhhcccCC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS--VLDQLLKYSENE   94 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~   94 (187)
                      .+++++|-.|++.| .+..+++.+ ..+.+|+.+|.+++.++...+.+   +   .+..++.|..+  ..+.+.++   -
T Consensus         5 L~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~---~---~~~~~~~Dv~d~~~v~~~~~~---~   74 (244)
T d1pr9a_           5 LAGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC---P---GIEPVCVDLGDWEATERALGS---V   74 (244)
T ss_dssp             CTTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---T---TCEEEECCTTCHHHHHHHHTT---C
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc---C---CCeEEEEeCCCHHHHHHHHHH---h
Confidence            36789999997665 333343333 23789999999988776555443   1   36667777643  23333322   4


Q ss_pred             CceeEEEEeC
Q 029803           95 GSFDYAFVDA  104 (187)
Q Consensus        95 ~~~D~i~~d~  104 (187)
                      +++|.++..+
T Consensus        75 g~iDilVnnA   84 (244)
T d1pr9a_          75 GPVDLLVNNA   84 (244)
T ss_dssp             CCCCEEEECC
T ss_pred             CCceEEEecc
Confidence            6899887653

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.51  E-value=4.3  Score=24.63  Aligned_cols=76  Identities=16%  Similarity=0.057  Sum_probs=49.8

Q ss_pred             CEEEEEeCCcchHHHHHHHHHhcCCCCcEEE--EEcchHHHHHHHhhcccCCCceeEEEEeCCCc--ccHHHHHHHHhcc
Q 029803           45 GQITAIDVNRETYEIGLPIIKKAGVDHKINF--IESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLL  120 (187)
Q Consensus        45 ~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~~~~L  120 (187)
                      .+|..+|-++...+..++.+...+.   .+.  ...+..+.+..+.     ..+||+|++|..-+  +-.++++++.+..
T Consensus         2 irILivDD~~~~~~~l~~~L~~~~~---~~~v~~a~~g~~al~~~~-----~~~~dlillD~~mP~~dG~e~~~~ir~~~   73 (123)
T d1dz3a_           2 IKVCIADDNRELVSLLDEYISSQPD---MEVIGTAYNGQDCLQMLE-----EKRPDILLLDIIMPHLDGLAVLERIRAGF   73 (123)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHTSTT---EEEEEEESSHHHHHHHHH-----HHCCSEEEEESCCSSSCHHHHHHHHHHHC
T ss_pred             cEEEEEeCCHHHHHHHHHHHHhCCC---cEEEEEECCHHHHHHHHH-----hcCCCEEEEcCCCCCCCHHHHHHHHHhcC
Confidence            4788899999999999998876542   332  3456666655543     25799999997544  3455677776544


Q ss_pred             CCCe-EEEE
Q 029803          121 KVGG-IAVY  128 (187)
Q Consensus       121 ~~gG-~lv~  128 (187)
                      ...- ++++
T Consensus        74 ~~~~~ii~~   82 (123)
T d1dz3a_          74 EHQPNVIML   82 (123)
T ss_dssp             SSCCEEEEE
T ss_pred             CCCCeEEEE
Confidence            4332 4444

>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulatory protein StyR, N-terminal domain
species: Pseudomonas fluorescens [TaxId: 294]

Probab=80.38  E-value=4.5  Score=24.71  Aligned_cols=75  Identities=13%  Similarity=0.085  Sum_probs=50.9

Q ss_pred             EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc--ccHHHHHHHHhccCCC
Q 029803           46 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVG  123 (187)
Q Consensus        46 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~~~~L~~g  123 (187)
                      +|..+|-++......+..++..|+.  + ....+..+.+..+     ...+||+|++|..-+  +-...++.+.+.-..-
T Consensus         4 ~ILiVDDd~~~~~~l~~~L~~~g~~--v-~~a~~~~~al~~~-----~~~~~dliilD~~mp~~~G~~~~~~i~~~~~~~   75 (128)
T d1yioa2           4 TVFVVDDDMSVREGLRNLLRSAGFE--V-ETFDCASTFLEHR-----RPEQHGCLVLDMRMPGMSGIELQEQLTAISDGI   75 (128)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTTTCE--E-EEESSHHHHHHHC-----CTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHcCCC--c-cccccHHHHHHHH-----HhcCCCEeehhhhcccchhHHHHHHHHhhCCCC
Confidence            8999999999999999999887752  3 3444666666654     247899999997533  3445666665443333


Q ss_pred             eEEEE
Q 029803          124 GIAVY  128 (187)
Q Consensus       124 G~lv~  128 (187)
                      -++++
T Consensus        76 ~ii~l   80 (128)
T d1yioa2          76 PIVFI   80 (128)
T ss_dssp             CEEEE
T ss_pred             eEEEE
Confidence            45554

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.28  E-value=1.2  Score=29.37  Aligned_cols=34  Identities=15%  Similarity=0.175  Sum_probs=26.7

Q ss_pred             CceeEEEEeCCCcccHHHHHHHHhccCCCeEEEE
Q 029803           95 GSFDYAFVDADKDNYCNYHERLMKLLKVGGIAVY  128 (187)
Q Consensus        95 ~~~D~i~~d~~~~~~~~~~~~~~~~L~~gG~lv~  128 (187)
                      ...|+|++..........++++.+.++++-++++
T Consensus        70 ~~ad~Ii~avps~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          70 ENAEVVLLGVSTDGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             TTCSEEEECSCGGGHHHHHHHHTTTCCSCEEEEC
T ss_pred             hccchhhcccchhhhHHHHHhhccccccceeccc
Confidence            5689999977777778889999899988655544

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.09  E-value=2.7  Score=25.52  Aligned_cols=75  Identities=9%  Similarity=0.082  Sum_probs=48.7

Q ss_pred             EEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHHHHHHHhhcccCCCceeEEEEeCCCc--ccHHHHHHHHhccCCC
Q 029803           46 QITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALSVLDQLLKYSENEGSFDYAFVDADKD--NYCNYHERLMKLLKVG  123 (187)
Q Consensus        46 ~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~i~~d~~~~--~~~~~~~~~~~~L~~g  123 (187)
                      +|..+|-++...+..++.++..|+.  + ....+..+.+..+.     ..+||+|++|..-+  +-.++++.+.+ ..+-
T Consensus         2 nILiVDDd~~~~~~l~~~L~~~g~~--v-~~a~~~~eal~~l~-----~~~~dliilD~~mP~~~G~e~~~~ir~-~~~~   72 (119)
T d1zh2a1           2 NVLIVEDEQAIRRFLRTALEGDGMR--V-FEAETLQRGLLEAA-----TRKPDLIILDLGLPDGDGIEFIRDLRQ-WSAV   72 (119)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTTTCE--E-EEESSHHHHHHHHH-----HHCCSEEEEESEETTEEHHHHHHHHHT-TCCC
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCE--E-EEeCCHHHHHHHHH-----hcCCCEEEeccccCCCCCchHHHHHHh-ccCC
Confidence            5788999999999999999877642  3 34456656555543     25899999996433  33455565543 3333


Q ss_pred             eEEEEe
Q 029803          124 GIAVYD  129 (187)
Q Consensus       124 G~lv~~  129 (187)
                      -++++.
T Consensus        73 piI~lt   78 (119)
T d1zh2a1          73 PVIVLS   78 (119)
T ss_dssp             CEEEEE
T ss_pred             cEEEEe
Confidence            455553

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=80.08  E-value=1.4  Score=26.72  Aligned_cols=50  Identities=18%  Similarity=0.273  Sum_probs=34.0

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhCCC-CCEEEEEeCCc--------chHHHHHHHHHhcCC
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTIPE-DGQITAIDVNR--------ETYEIGLPIIKKAGV   69 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~~~-~~~v~~iD~~~--------~~~~~a~~~~~~~~~   69 (187)
                      .-|++++-+|.  |..++.+|..+.. +.+|+.+|..+        +..+..++.+++.+.
T Consensus        19 ~~p~~vvIiGg--G~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV   77 (115)
T d1lvla2          19 ALPQHLVVVGG--GYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGI   77 (115)
T ss_dssp             SCCSEEEEECC--SHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTC
T ss_pred             cCCCeEEEECC--CHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcc
Confidence            45789999887  6666666665531 57899998754        345566677776654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=80.01  E-value=7.2  Score=26.85  Aligned_cols=75  Identities=19%  Similarity=0.172  Sum_probs=44.4

Q ss_pred             cCCCEEEEEcccccHHHHHHHhhC-CCCCEEEEEeCCcchHHHHHHHHHhcCCCCcEEEEEcchHH------HHHHHhhc
Q 029803           18 VNAKKTIEIGVFTGYSLLLTALTI-PEDGQITAIDVNRETYEIGLPIIKKAGVDHKINFIESEALS------VLDQLLKY   90 (187)
Q Consensus        18 ~~~~~vLeiG~g~G~~~~~la~~~-~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~   90 (187)
                      .+++.+|-.|++.| .+..+++.+ ..+.+|+.+|.+++..+.+++.    +    ..++..|..+      .+....+.
T Consensus         3 l~GK~alITGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~----~----~~~~~~Dv~~~~~v~~~~~~~~~~   73 (248)
T d2d1ya1           3 FAGKGVLVTGGARG-IGRAIAQAFAREGALVALCDLRPEGKEVAEAI----G----GAFFQVDLEDERERVRFVEEAAYA   73 (248)
T ss_dssp             TTTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSTTHHHHHHHH----T----CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----C----CeEEEEeCCCHHHHHHHHHHHHHh
Confidence            46788998886655 333344333 2378999999998866544332    2    3456777632      22222211


Q ss_pred             ccCCCceeEEEEeC
Q 029803           91 SENEGSFDYAFVDA  104 (187)
Q Consensus        91 ~~~~~~~D~i~~d~  104 (187)
                         .++.|.++..+
T Consensus        74 ---~G~iDiLVnnA   84 (248)
T d2d1ya1          74 ---LGRVDVLVNNA   84 (248)
T ss_dssp             ---HSCCCEEEECC
T ss_pred             ---cCCCCeEEEeC
Confidence               36899887653