Citrus Sinensis ID: 029824

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MAAARMMQIRRLISLLSRNQPQASLLKEPTRQFLPSTSAHFGISEYHRRGLQTLINSNSVTDADQEQHEAGNSMPSKSNDSSAVKLSATSNLKTSARHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVKKGSVDTLNLTLEDLAGREVLKD
Secondary Structure (PSIPRED)
cccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccEEEEEcccccccEEEccccccccccccHHHHHHHcccEEEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccEEcHHHHcccEEEEEcccccccEEEHHccccccccccHHHHHHHcccEEEEEEcccEEEEHHHccccHHccc
Coil and Loop (DISEMBL)
MAAARMMQIRRLISLLSRnqpqasllkeptrqflpstsahfgiseYHRRGLQtlinsnsvtdadqeqheagnsmpsksndssavklsatsnlktsarHDLAMIFtckvcetrsvktacrESYEKGVVVARCGGCNNLHLIADhlgwfgepgsIEDFLAARGeevkkgsvdtLNLTLEdlagrevlkd
Flexible Loop (DISEMBL)
MAAARMMQIRRLISLLSRNQPQASLLKEPTRQFLPSTSAHFGISEYHRRGLQTLINSNSVTDADQEQHEagnsmpsksndssaVKLSATSNlktsarhdLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEvkkgsvdtlnltledlagrevlkd
Low Complexity Region (SEG)
MAAARMMQIRRLISLLSRNQPQASLLKEPTRQFLPSTSAHFGISEYHRRGLQTLINSNSVTDADQEQHEAGNSMPSKSNDSSAVKLSATSNLKTSARHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVKKGSVDTLNLTLEDLAGREVLKD
Disordered region (IsUnstruct)
****************************************FGISEYHRR*L**********************************************HDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEV****VDTLNLT************
Disordered Region (DISOPRED)
****************************************************************************************************AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVKKGSVDTLNLTLEDLAGR*****
Disordered Region (DISEMBL)
********IRRLISLLSRNQPQASLLKEPTRQFLPSTSAHFGISEYHRRGLQTLINSNSVTD**************************TSNLKTSARHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVKKGSVDTLNLTLEDLAGREVLKD
Disordered Region (DISPRO)
****RMMQIRRLISLLSRN*****************************************************************************RHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVKKGSVDTLNLTLEDLAGR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAARMMQIRRLISLLSRNQPQASLLKEPTRQFLPSTSAHFGISEYHRRGLQTLINSNSVTDADQEQHEAGNSMPSKSNDSSAVKLSATSNLKTSARHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVKKGSVDTLNLTLEDLAGREVLKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q0IH40	188	DNL-type zinc finger prot	N/A	no	0.347	0.345	0.544	2e-15
Q9D113	177	DNL-type zinc finger prot	yes	no	0.406	0.429	0.5	1e-14
A1L1P7	183	DNL-type zinc finger prot	yes	no	0.406	0.415	0.439	8e-14
Q5SXM8	178	DNL-type zinc finger prot	yes	no	0.406	0.426	0.462	2e-13
Q09759	175	Uncharacterized protein C	yes	no	0.545	0.582	0.356	1e-11
P42844	174	Mitochondrial protein imp	yes	no	0.443	0.477	0.415	1e-10
A6ZSH0	174	Mitochondrial protein imp	N/A	no	0.443	0.477	0.415	1e-10
B5VQB0	174	Mitochondrial protein imp	N/A	no	0.443	0.477	0.415	1e-10
B3LPE4	174	Mitochondrial protein imp	N/A	no	0.443	0.477	0.415	1e-10

>sp|Q0IH40|DNLZ_XENLA DNL-type zinc finger protein OS=Xenopus laevis GN=dnlz PE=2 SV=1

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/68 (54%), Positives = 51/68 (75%), Gaps = 3/68 (4%)

Query: 102 MIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGE---PGSIEDFLA 158
           +I+TCKVC TRS KT  + +Y KGVV+ RC GC N H+IAD+LGWF +     +IE+ LA
Sbjct: 84  LIYTCKVCATRSSKTISKVAYHKGVVIVRCPGCENHHIIADNLGWFSDLEGRRNIEEILA 143

Query: 159 ARGEEVKK 166
           A+GE+V++
Sbjct: 144 AKGEQVQR 151

Xenopus laevis (taxid: 8355)

>sp|Q9D113|DNLZ_MOUSE DNL-type zinc finger protein OS=Mus musculus GN=Dnlz PE=2 SV=1

 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 54/80 (67%), Gaps = 4/80 (5%)

Query: 102 MIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGE---PGSIEDFLA 158
           +++TCKVC TRS K   + +Y +GVV+  C GC N H+IAD+L WF +     +IE+ LA
Sbjct: 75  LVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLSWFSDLKGKRNIEEILA 134

Query: 159 ARGEEVKKGSVD-TLNLTLE 177
           ARGEEV++ S D  L L LE
Sbjct: 135 ARGEEVRRVSGDGALELILE 154

Mus musculus (taxid: 10090)

>sp|A1L1P7|DNLZ_DANRE DNL-type zinc finger protein OS=Danio rerio GN=dnlz PE=2 SV=1

 Score = 76.6 bits (187), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 6/82 (7%)

Query: 88  ATSNLKTSARHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWF 147
           A   L+++  H   +++TCKVC TRS+K   + +Y KGVV+  C GC N H+IAD+L WF
Sbjct: 72  AIGQLQSTHYH---LVYTCKVCSTRSMKKISKLAYHKGVVIVTCPGCKNHHVIADNLKWF 128

Query: 148 GE---PGSIEDFLAARGEEVKK 166
            +     +IE+ LAA+GE V++
Sbjct: 129 SDLEGKRNIEEILAAKGESVRR 150

Danio rerio (taxid: 7955)

>sp|Q5SXM8|DNLZ_HUMAN DNL-type zinc finger protein OS=Homo sapiens GN=DNLZ PE=2 SV=1

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 4/80 (5%)

Query: 102 MIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGE---PGSIEDFLA 158
           +++TCKVC TRS K   + +Y +GVV+  C GC N H+IAD+LGWF +     +IE+ L 
Sbjct: 71  LVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLNGKRNIEEILT 130

Query: 159 ARGEEVKK-GSVDTLNLTLE 177
           ARGE+V +      L L LE
Sbjct: 131 ARGEQVHRVAGEGALELVLE 150

Homo sapiens (taxid: 9606)

>sp|Q09759|YA72_SCHPO Uncharacterized protein C24H6.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24H6.02c PE=4 SV=1

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 13/115 (11%)

Query: 60  VTDADQEQHEAGNSMPSKSNDSSAVKLSATSNLKTSARHDLAMIFTCKVCETRSVKTACR 119
            T +D +   +G  +PS  +D+  ++   T N+           FTC VC TRS     +
Sbjct: 48  FTQSDAKDLASG--VPSVKSDADQLQPKPTYNVS----------FTCTVCNTRSNHNFSK 95

Query: 120 ESYEKGVVVARCGGCNNLHLIADHLGWFGEPG-SIEDFLAARGEEVKKGSVDTLN 173
           ++Y  G V+ +C  C N HL+ADHL  F E   +IED LA +GE  KKG    +N
Sbjct: 96  QAYHNGTVLVQCPKCKNRHLMADHLKIFSEERVTIEDILAKKGETFKKGYGQVIN 150

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P42844|ZIM17_YEAST Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ZIM17 PE=1 SV=2

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 6/89 (6%)

Query: 100 LAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPG-SIEDFLA 158
           + + FTCK C TRS  T  +++YEKG V+  C  C   HLIADHL  F +   ++E  + 
Sbjct: 69  MMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLMK 128

Query: 159 ARGEEVKKGSVDTLNLTLEDLAGREVLKD 187
           A GE+V   S D  +L  ED+   + LKD
Sbjct: 129 ANGEQV---SQDVGDLEFEDIP--DSLKD 152

Involved in protein import into mitochondria. Acts as a Hsp70-specific chaperone that prevents self-aggregation of the matrix Hsp70 chaperones SSC1 (mtHSP70) and SSQ1, thereby maintaining their function in mitochondrial protein import and Fe/S protein biosynthesis. May act together with PAM18 as co-chaperone to facilitate recognition and folding of imported proteins by SSC1 in the mitochondrial matrix.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|A6ZSH0|ZIM17_YEAS7 Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae (strain YJM789) GN=ZIM17 PE=3 SV=2

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 6/89 (6%)

Query: 100 LAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPG-SIEDFLA 158
           + + FTCK C TRS  T  +++YEKG V+  C  C   HLIADHL  F +   ++E  + 
Sbjct: 69  MMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLMK 128

Query: 159 ARGEEVKKGSVDTLNLTLEDLAGREVLKD 187
           A GE+V   S D  +L  ED+   + LKD
Sbjct: 129 ANGEQV---SQDVGDLEFEDIP--DSLKD 152

Involved in protein import into mitochondria. Acts as a Hsp70-specific chaperone that prevents self-aggregation of the matrix Hsp70 chaperones SSC1 (mtHSP70) and SSQ1, thereby maintaining their function in mitochondrial protein import and Fe/S protein biosynthesis. May act together with PAM18 as co-chaperone to facilitate recognition and folding of imported proteins by SSC1 in the mitochondrial matrix.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

>sp|B5VQB0|ZIM17_YEAS6 Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=ZIM17 PE=3 SV=2

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 6/89 (6%)

Query: 100 LAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPG-SIEDFLA 158
           + + FTCK C TRS  T  +++YEKG V+  C  C   HLIADHL  F +   ++E  + 
Sbjct: 69  MMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLMK 128

Query: 159 ARGEEVKKGSVDTLNLTLEDLAGREVLKD 187
           A GE+V   S D  +L  ED+   + LKD
Sbjct: 129 ANGEQV---SQDVGDLEFEDIP--DSLKD 152

Involved in protein import into mitochondria. Acts as a Hsp70-specific chaperone that prevents self-aggregation of the matrix Hsp70 chaperones SSC1 (mtHSP70) and SSQ1, thereby maintaining their function in mitochondrial protein import and Fe/S protein biosynthesis. May act together with PAM18 as co-chaperone to facilitate recognition and folding of imported proteins by SSC1 in the mitochondrial matrix.

Saccharomyces cerevisiae (strain AWRI1631) (taxid: 545124)

>sp|B3LPE4|ZIM17_YEAS1 Mitochondrial protein import protein ZIM17 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=ZIM17 PE=3 SV=2

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 6/89 (6%)

Query: 100 LAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPG-SIEDFLA 158
           + + FTCK C TRS  T  +++YEKG V+  C  C   HLIADHL  F +   ++E  + 
Sbjct: 69  MMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLMK 128

Query: 159 ARGEEVKKGSVDTLNLTLEDLAGREVLKD 187
           A GE+V   S D  +L  ED+   + LKD
Sbjct: 129 ANGEQV---SQDVGDLEFEDIP--DSLKD 152


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.128    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,335,611
Number of Sequences: 539616
Number of extensions: 2227284
Number of successful extensions: 6395
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6381
Number of HSP's gapped (non-prelim): 19
length of query: 187
length of database: 191,569,459
effective HSP length: 111
effective length of query: 76
effective length of database: 131,672,083
effective search space: 10007078308
effective search space used: 10007078308
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)

Involved in protein import into mitochondria. Acts as a Hsp70-specific chaperone that prevents self-aggregation of the matrix Hsp70 chaperones SSC1 (mtHSP70) and SSQ1, thereby maintaining their function in mitochondrial protein import and Fe/S protein biosynthesis. May act together with PAM18 as co-chaperone to facilitate recognition and folding of imported proteins by SSC1 in the mitochondrial matrix.

Saccharomyces cerevisiae (strain RM11-1a) (taxid: 285006)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
255580203	199	conserved hypothetical protein [Ricinus	0.994	0.934	0.645	2e-63
225449004	192	PREDICTED: uncharacterized protein C24H6	0.951	0.927	0.656	8e-62
224100765	199	predicted protein [Populus trichocarpa]	1.0	0.939	0.628	3e-61
356576237	189	PREDICTED: DNL-type zinc finger protein-	0.946	0.936	0.612	4e-55
296085994	589	unnamed protein product [Vitis vinifera]	0.855	0.271	0.625	2e-52
351725887	188	uncharacterized protein LOC100527239 [Gl	0.941	0.936	0.617	3e-52
388500408	194	unknown [Lotus japonicus]	0.732	0.706	0.675	4e-49
449449360	186	PREDICTED: uncharacterized protein LOC10	0.935	0.940	0.583	6e-49
449513071	223	PREDICTED: uncharacterized protein LOC10	0.935	0.784	0.578	2e-48
242067006	240	hypothetical protein SORBIDRAFT_04g03747	0.786	0.612	0.605	9e-46

>gi|255580203|ref|XP_002530932.1| conserved hypothetical protein [Ricinus communis] gi|223529491|gb|EEF31447.1| conserved hypothetical protein [Ricinus communis]

 Score =  247 bits (630), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 129/200 (64%), Positives = 153/200 (76%), Gaps = 14/200 (7%)

Query: 1   MAAAR-MMQIRRLISLLSRNQP--QASLLKEPTRQFLPSTSAHFGISEYHRRGLQTLINS 57
           MAAAR ++QIRR++S+L+ N     +S  KEP  QFLPST++ F  ++++RR  QT  N 
Sbjct: 1   MAAARNLLQIRRVLSVLTHNNQLGTSSFNKEPAWQFLPSTTSIFARNDFYRRRFQTQSNP 60

Query: 58  NSVTDADQEQHEAG--------NSMPS--KSNDSSAVKLSATSNLKTSARHDLAMIFTCK 107
            S  + D + HE+         ++ PS   SN+ S VK SA S+LKTS RHDLAMIFTCK
Sbjct: 61  ASQPE-DSQNHESSCPNRNCESDNAPSDINSNEDSPVKYSAVSSLKTSPRHDLAMIFTCK 119

Query: 108 VCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVKKG 167
           VCETRSVKT CRESYEKGVVVARCGGCNNLHLIAD LGWFGEPGSIEDFLAARGEEV+KG
Sbjct: 120 VCETRSVKTICRESYEKGVVVARCGGCNNLHLIADRLGWFGEPGSIEDFLAARGEEVRKG 179

Query: 168 SVDTLNLTLEDLAGREVLKD 187
           S DTLNLTLEDLAG ++LK+
Sbjct: 180 STDTLNLTLEDLAGNKILKE 199

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449004|ref|XP_002271854.1| PREDICTED: uncharacterized protein C24H6.02c [Vitis vinifera]

 Score =  241 bits (616), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 124/189 (65%), Positives = 144/189 (76%), Gaps = 11/189 (5%)

Query: 3   AARMMQIRRLISLLSRNQPQASLLKEPTRQFLPSTSAHFGISEYHRRGLQTLINSNSVTD 62
           AAR++Q R   S L    PQ  ++KEP+ QFLPS SA F   +++RRGL T +   +  +
Sbjct: 2   AARLLQ-RIGRSFLGPKHPQTPIIKEPSWQFLPSASAAFTRDQFYRRGLGTQVEPTNYAN 60

Query: 63  ADQEQHEAG----NSMPS------KSNDSSAVKLSATSNLKTSARHDLAMIFTCKVCETR 112
            D+E+ EAG    NS  +      KS+D+SAVK +A SNLKTS+RHDLAMIFTCKVCETR
Sbjct: 61  EDEEKCEAGSLNLNSDSADDVSQVKSDDNSAVKYTAMSNLKTSSRHDLAMIFTCKVCETR 120

Query: 113 SVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVKKGSVDTL 172
           SVKTACRESYE+GVVV RC GC+NLHLIAD LGWFGEPGSIEDFL ARGEEVKKGS DTL
Sbjct: 121 SVKTACRESYERGVVVVRCDGCSNLHLIADRLGWFGEPGSIEDFLDARGEEVKKGSADTL 180

Query: 173 NLTLEDLAG 181
           NLTLEDLAG
Sbjct: 181 NLTLEDLAG 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100765|ref|XP_002312005.1| predicted protein [Populus trichocarpa] gi|222851825|gb|EEE89372.1| predicted protein [Populus trichocarpa]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 125/199 (62%), Positives = 151/199 (75%), Gaps = 12/199 (6%)

Query: 1   MAAAR-MMQIRRLISLLSRN-QP-QASLLKEPTRQFLPSTSAHFGISEYHRRGLQTLINS 57
           MAAAR  +Q+RRL+S L+ N QP  +SL KE + + LPS S+ F  ++++ RGLQTL   
Sbjct: 1   MAAARNTLQLRRLLSALAHNNQPFTSSLNKEHSWKLLPSASSLFTRNDFYGRGLQTLAKP 60

Query: 58  NSVTDADQEQHEAG-------NSMPSK--SNDSSAVKLSATSNLKTSARHDLAMIFTCKV 108
            +  + + E HE G        + P++  SN+ SA   S+ SNLKTS RHDLAMIFTCKV
Sbjct: 61  ANQANEESENHENGLKPNCSSANAPAQVNSNEGSATTYSSLSNLKTSPRHDLAMIFTCKV 120

Query: 109 CETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVKKGS 168
           CETRSVKT CRESYEKGVVVARCGGCNNLHLIADHLGWFG+PGSIE+ LAARGEEVKKGS
Sbjct: 121 CETRSVKTVCRESYEKGVVVARCGGCNNLHLIADHLGWFGQPGSIEEILAARGEEVKKGS 180

Query: 169 VDTLNLTLEDLAGREVLKD 187
            DT NLTLEDLAG+++ K+
Sbjct: 181 ADTFNLTLEDLAGKKIFKE 199

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576237|ref|XP_003556240.1| PREDICTED: DNL-type zinc finger protein-like [Glycine max]

 Score =  219 bits (558), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 117/191 (61%), Positives = 140/191 (73%), Gaps = 14/191 (7%)

Query: 3   AARMMQIRRLISLLSRNQPQASLLKEPTRQFLPSTSAHFGISEYHRRGLQTLINSNSVTD 62
           AARM+Q +RLIS+ SR Q    + +E +  +   TSA      +H+R + T  N      
Sbjct: 2   AARMLQ-KRLISIFSR-QTHHPITQESS--WYSPTSAILNRYGFHQRRVTTHTNPIKPVC 57

Query: 63  ADQEQHEAGN--SMPSKS--------NDSSAVKLSATSNLKTSARHDLAMIFTCKVCETR 112
            D E +EA    S P+          N++S++K SA S+LKTS+RHDLAM+FTCKVCETR
Sbjct: 58  EDVENNEADTLKSSPNPDEVATSISVNETSSIKFSAKSSLKTSSRHDLAMVFTCKVCETR 117

Query: 113 SVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVKKGSVDTL 172
           S+KT CRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLA+RGEEVK+GSVDTL
Sbjct: 118 SIKTVCRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLASRGEEVKRGSVDTL 177

Query: 173 NLTLEDLAGRE 183
           NLTLEDLAGR+
Sbjct: 178 NLTLEDLAGRK 188

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085994|emb|CBI31435.3| unnamed protein product [Vitis vinifera]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 107/171 (62%), Positives = 127/171 (74%), Gaps = 11/171 (6%)

Query: 3   AARMMQIRRLISLLSRNQPQASLLKEPTRQFLPSTSAHFGISEYHRRGLQTLINSNSVTD 62
           AAR++Q R   S L    PQ  ++KEP+ QFLPS SA F   +++RRGL T +   +  +
Sbjct: 2   AARLLQ-RIGRSFLGPKHPQTPIIKEPSWQFLPSASAAFTRDQFYRRGLGTQVEPTNYAN 60

Query: 63  ADQEQHEAG----NSMPS------KSNDSSAVKLSATSNLKTSARHDLAMIFTCKVCETR 112
            D+E+ EAG    NS  +      KS+D+SAVK +A SNLKTS+RHDLAMIFTCKVCETR
Sbjct: 61  EDEEKCEAGSLNLNSDSADDVSQVKSDDNSAVKYTAMSNLKTSSRHDLAMIFTCKVCETR 120

Query: 113 SVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEE 163
           SVKTACRESYE+GVVV RC GC+NLHLIAD LGWFGEPGSIEDFL ARGEE
Sbjct: 121 SVKTACRESYERGVVVVRCDGCSNLHLIADRLGWFGEPGSIEDFLDARGEE 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725887|ref|NP_001236852.1| uncharacterized protein LOC100527239 [Glycine max] gi|255631854|gb|ACU16294.1| unknown [Glycine max]

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 118/191 (61%), Positives = 138/191 (72%), Gaps = 15/191 (7%)

Query: 3   AARMMQIRRLISLLSRNQPQASLLKEPTRQFLPSTSAHFGISEYHRRGLQTLINSNSVTD 62
           AARM+Q RR IS+ SR Q    + +E    +   TSA      +H+RG+ T  N      
Sbjct: 2   AARMLQ-RRFISIFSR-QTHHPITQE---SWYSPTSAILNSYGFHQRGVMTHTNPIKPVC 56

Query: 63  ADQEQHEAGN--SMPSKS--------NDSSAVKLSATSNLKTSARHDLAMIFTCKVCETR 112
            D E +EA    S P+          N++S+VK S  S+LKTS+RHDL M+FTCKVCETR
Sbjct: 57  EDVENNEADTLKSSPNPDEVATSISVNETSSVKFSTKSSLKTSSRHDLVMVFTCKVCETR 116

Query: 113 SVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVKKGSVDTL 172
           S+KTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGS+EDFLAARGEEVK+GSVDTL
Sbjct: 117 SIKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSVEDFLAARGEEVKRGSVDTL 176

Query: 173 NLTLEDLAGRE 183
           NLTLEDLAGR+
Sbjct: 177 NLTLEDLAGRK 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500408|gb|AFK38270.1| unknown [Lotus japonicus]

 Score =  199 bits (506), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 98/145 (67%), Positives = 112/145 (77%), Gaps = 8/145 (5%)

Query: 47  HRRGL---QTLINSNSVTDADQEQ-----HEAGNSMPSKSNDSSAVKLSATSNLKTSARH 98
           H++G     T  + +   DAD  +       A  SM +  N  S VK SA S+LKTS+RH
Sbjct: 46  HKKGFFSTDTNPDKHVCEDADSSKPSVIPDNAPTSMSTNENSESGVKFSANSSLKTSSRH 105

Query: 99  DLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLA 158
           DLAMIFTCKVCETRS+KT CRESYEKGVVVARCGGCNN HLIADHLGWFGEP SIEDFLA
Sbjct: 106 DLAMIFTCKVCETRSIKTVCRESYEKGVVVARCGGCNNHHLIADHLGWFGEPRSIEDFLA 165

Query: 159 ARGEEVKKGSVDTLNLTLEDLAGRE 183
           ARGE+VKKGS+DTLNLTLED+AG++
Sbjct: 166 ARGEDVKKGSIDTLNLTLEDIAGKQ 190

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449360|ref|XP_004142433.1| PREDICTED: uncharacterized protein LOC101207740 [Cucumis sativus]

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 108/185 (58%), Positives = 126/185 (68%), Gaps = 10/185 (5%)

Query: 7   MQIRRLISLLSRNQPQASLLKE---PTRQFLPS---TSAHFGISEYHRRGLQTLINSNSV 60
           M  RR +SL  R++ Q S   E   P   F  S   T   F   E H       I  +S 
Sbjct: 1   MAARRFLSLAFRHRLQTSPSLESTCPIHSFANSWFLTGHKFTRRENHTEATPA-IAEDSK 59

Query: 61  TDADQEQH---EAGNSMPSKSNDSSAVKLSATSNLKTSARHDLAMIFTCKVCETRSVKTA 117
            + D +     + G  +    +D+S+VK S  SNLK S RHDLAMIFTCKVCETRS+KT 
Sbjct: 60  DNEDNKLRPISDLGKPLHENKDDTSSVKYSVLSNLKPSPRHDLAMIFTCKVCETRSIKTV 119

Query: 118 CRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVKKGSVDTLNLTLE 177
           CRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGS+EDFLAARGEEV+KGS+D+L+LTLE
Sbjct: 120 CRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSVEDFLAARGEEVRKGSLDSLSLTLE 179

Query: 178 DLAGR 182
           DLAG+
Sbjct: 180 DLAGK 184

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449513071|ref|XP_004164220.1| PREDICTED: uncharacterized protein LOC101230427 isoform 1 [Cucumis sativus] gi|449513075|ref|XP_004164221.1| PREDICTED: uncharacterized protein LOC101230427 isoform 2 [Cucumis sativus]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/185 (57%), Positives = 126/185 (68%), Gaps = 10/185 (5%)

Query: 7   MQIRRLISLLSRNQPQASLLKE---PTRQFLPS---TSAHFGISEYHRRGLQTLINSNSV 60
           M  RR +SL  R++ Q S   E   P   F  S   T   F   E H       I  +S 
Sbjct: 38  MAARRFLSLAFRHRLQTSPSLESTCPIHSFANSWFLTGHKFSRRENHTEATPA-IAEDSK 96

Query: 61  TDADQEQH---EAGNSMPSKSNDSSAVKLSATSNLKTSARHDLAMIFTCKVCETRSVKTA 117
            + D +     + G  +    +D+S+VK S  SNLK S RHDLAMIFTCKVCETRS+KT 
Sbjct: 97  DNEDNKLRPISDLGEPLHENKDDTSSVKYSVLSNLKPSPRHDLAMIFTCKVCETRSIKTV 156

Query: 118 CRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVKKGSVDTLNLTLE 177
           CRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGS+EDFLAARGEEV+KGS+++L+LTLE
Sbjct: 157 CRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSVEDFLAARGEEVRKGSLNSLSLTLE 216

Query: 178 DLAGR 182
           DLAG+
Sbjct: 217 DLAGK 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242067006|ref|XP_002454792.1| hypothetical protein SORBIDRAFT_04g037475 [Sorghum bicolor] gi|241934623|gb|EES07768.1| hypothetical protein SORBIDRAFT_04g037475 [Sorghum bicolor]

 Score =  188 bits (477), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 92/152 (60%), Positives = 108/152 (71%), Gaps = 5/152 (3%)

Query: 38  SAHFGISEYHRRGLQTLIN----SNSVTDA-DQEQHEAGNSMPSKSNDSSAVKLSATSNL 92
           S  F  +     GL++L+     SN+ TD  DQ+  E      S     S  K+  TSNL
Sbjct: 80  SQGFSFAPPATAGLRSLLTVTGASNTATDPQDQQDSETTPPPASVPTPESGFKVRDTSNL 139

Query: 93  KTSARHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGS 152
           K S RHDLAMIFTCKVCETRS+K A ++SY+ GVVV RCGGCNNLHLIAD LGWFGEPGS
Sbjct: 140 KISPRHDLAMIFTCKVCETRSMKMASKDSYQNGVVVVRCGGCNNLHLIADRLGWFGEPGS 199

Query: 153 IEDFLAARGEEVKKGSVDTLNLTLEDLAGREV 184
           IEDFLA++GEEVKKGS DTLN TL+DLAG ++
Sbjct: 200 IEDFLASQGEEVKKGSTDTLNFTLDDLAGSQI 231

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
TAIR|locus:1006230204	223	ZR3 "zinc ribbon 3" [Arabidops	0.973	0.816	0.507	8.4e-42
UNIPROTKB|Q5SXM8	178	DNLZ "DNL-type zinc finger pro	0.449	0.471	0.438	3.7e-17
WB|WBGene00018723	119	F53A3.7 [Caenorhabditis elegan	0.475	0.747	0.468	3.7e-16
MGI|MGI:106559	177	Dnlz "DNL-type zinc finger" [M	0.534	0.564	0.438	4.7e-16
UNIPROTKB|E1BGR3	169	LOC100848156 "Uncharacterized	0.406	0.449	0.5	9.8e-16
RGD|1308635	173	Dnlz "DNL-type zinc finger" [R	0.534	0.578	0.428	1.6e-15
FB|FBgn0030676	174	CG12379 [Drosophila melanogast	0.470	0.505	0.440	4.2e-15
ZFIN|ZDB-GENE-070112-1482	183	zgc:158228 "zgc:158228" [Danio	0.679	0.693	0.365	6.9e-15
UNIPROTKB|F1PCL0	171	DNLZ "Uncharacterized protein"	0.401	0.438	0.468	1e-13
UNIPROTKB|F1NF52	178	DNLZ "Uncharacterized protein"	0.347	0.365	0.455	1.3e-13

TAIR|locus:1006230204 ZR3 "zinc ribbon 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 96/189 (50%), Positives = 122/189 (64%)

Query:     3 AARMMQIRRLISLLSRNQPQASLLKEPTRQFLPSTSAHFGISEYHR---RGLQTLINSN- 58
             AAR++ +RR +SL S  Q +  L +  T Q   S S       Y R   R L  +  +N 
Sbjct:    32 AARLLALRRALSLFSNQQHRFPLSQVSTEQLSLSNSLFSRSHVYGRLFQRQLSVIREANE 91

Query:    59 -SVTDADQEQHEAGNS--MPSKSNDSSAVKLSATSNLKTSARHDLAMIFTCKVCETRSVK 115
              SVT+     + A  S  +PS +  S  + +   S LK + RHD  M+FTCKVC+TRS+K
Sbjct:    92 ASVTNVCNSSNSATESAKVPSPATPSEEMMVKYKSQLKINPRHDFMMVFTCKVCDTRSMK 151

Query:   116 TACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVKKGSVDTLNLT 175
              A RESYE GVVV RCGGC+NLHLIAD  GWFGEPGS+EDFLA++GEE KKGS+D+LNLT
Sbjct:   152 MASRESYENGVVVVRCGGCDNLHLIADRRGWFGEPGSVEDFLASQGEEFKKGSMDSLNLT 211

Query:   176 LEDLAGREV 184
              EDLAG ++
Sbjct:   212 PEDLAGGKI 220

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5SXM8 DNLZ "DNL-type zinc finger protein" [Homo sapiens (taxid:9606)]

 Score = 189 (71.6 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
 Identities = 39/89 (43%), Positives = 56/89 (62%)

Query:    93 KTSARHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPG- 151
             +  A H   +++TCKVC TRS K   + +Y +GVV+  C GC N H+IAD+LGWF +   
Sbjct:    63 RVEAAH-YQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLNG 121

Query:   152 --SIEDFLAARGEEVKKGSVD-TLNLTLE 177
               +IE+ L ARGE+V + + +  L L LE
Sbjct:   122 KRNIEEILTARGEQVHRVAGEGALELVLE 150

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

WB|WBGene00018723 F53A3.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 44/94 (46%), Positives = 61/94 (64%)

Query:    76 SKSNDSSAVKLSATSNLKTSARHDLAMIFTCKVCETRS-VKTACRESYEKGVVVARCGGC 134
             S+S   +  +LSAT   K   +  L++ +TCKVC +R   KT  + SYEKGVV+  C GC
Sbjct:    13 SRSFSETVPRLSATPLGKQEPQ--LSLSYTCKVCNSREGPKTFAKSSYEKGVVIVTCSGC 70

Query:   135 NNLHLIADHLGWFGE-PG-SIEDFLAARGEEVKK 166
             +N H+IAD++GWF +  G +IED L  RGE VK+
Sbjct:    71 HNHHIIADNIGWFEDFKGKNIEDHLKTRGEAVKR 104

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

MGI|MGI:106559 Dnlz "DNL-type zinc finger" [Mus musculus (taxid:10090)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 46/105 (43%), Positives = 65/105 (61%)

Query:    77 KSNDSSAVKLSATSNLKTSARHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNN 136
             +S+ S+     A +  +  A H   +++TCKVC TRS K   + +Y +GVV+  C GC N
Sbjct:    51 RSSSSAPGSGRAAALGRVEADH-YQLVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQN 109

Query:   137 LHLIADHLGWFGE-PG--SIEDFLAARGEEVKKGSVD-TLNLTLE 177
              H+IAD+L WF +  G  +IE+ LAARGEEV++ S D  L L LE
Sbjct:   110 HHIIADNLSWFSDLKGKRNIEEILAARGEEVRRVSGDGALELILE 154

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1BGR3 LOC100848156 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 40/80 (50%), Positives = 56/80 (70%)

Query:   102 MIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGE-PG--SIEDFLA 158
             +++TCKVC TRS K   + +Y +GVV+  C GC N H+IAD+LGWF +  G  +IE+ LA
Sbjct:    62 LVYTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLGWFSDLDGKRNIEEILA 121

Query:   159 ARGEEVKKGSVD-TLNLTLE 177
             ARGE+V++ + D  L L LE
Sbjct:   122 ARGEKVRRVAGDGALELLLE 141

GO:0005739 "mitochondrion" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

RGD|1308635 Dnlz "DNL-type zinc finger" [Rattus norvegicus (taxid:10116)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 45/105 (42%), Positives = 64/105 (60%)

Query:    77 KSNDSSAVKLSATSNLKTSARHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNN 136
             +S+ S+     A +  +  A H   +++TCKVC TRS K   + +Y +GVV+  C GC N
Sbjct:    47 RSSSSAPGSEHAAALGRVKADH-YQLVYTCKVCGTRSSKHISKLAYHQGVVIVTCPGCQN 105

Query:   137 LHLIADHLGWFGE-PG--SIEDFLAARGEEVKKGSVD-TLNLTLE 177
              H+IAD+L WF +  G  +IE+ LAARGEEV++   D  L L LE
Sbjct:   106 HHIIADNLSWFSDLKGKRNIEEILAARGEEVRRVCGDGALELILE 150

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0030676 CG12379 [Drosophila melanogaster (taxid:7227)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 41/93 (44%), Positives = 63/93 (67%)

Query:    76 SKSNDSSAVKLSATSNLKTSARH-DLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGC 134
             SK  D  A K  AT+++  +     + +I+TCKVC+TR++KT  + +Y++GVV+  C GC
Sbjct:    68 SKPVDD-ADKTVATNSIPLAKLEAKMQLIYTCKVCQTRNMKTISKLAYQRGVVIVTCEGC 126

Query:   135 NNLHLIADHLGWFGE-PG--SIEDFLAARGEEV 164
             +N HLIAD+L WF +  G  +IE+ LA +GE+V
Sbjct:   127 SNHHLIADNLNWFTDLDGKRNIEEILAEKGEKV 159

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-070112-1482 zgc:158228 "zgc:158228" [Danio rerio (taxid:7955)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 53/145 (36%), Positives = 82/145 (56%)

Query:    50 GLQTLINSNSVTDADQEQHEAGNSMPSKS---ND---SSAVKLSATSNLKTSARHDLA-- 101
             G+ ++  +  VT A + +HE  NS  + S   +D    + + LS   +  T A   L   
Sbjct:    21 GVLSVPETQRVTLA-RVRHEESNSAFTNSTLRSDVGHDTGLGLSFCRSFSTEAIGQLQST 79

Query:   102 ---MIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGE-PG--SIED 155
                +++TCKVC TRS+K   + +Y KGVV+  C GC N H+IAD+L WF +  G  +IE+
Sbjct:    80 HYHLVYTCKVCSTRSMKKISKLAYHKGVVIVTCPGCKNHHVIADNLKWFSDLEGKRNIEE 139

Query:   156 FLAARGEEVKK--GSVDTLNLTLED 178
              LAA+GE V++  GS + L +  E+
Sbjct:   140 ILAAKGESVRRVEGS-EALEIVNEE 163

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1PCL0 DNLZ "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 37/79 (46%), Positives = 53/79 (67%)

Query:   102 MIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGE-PG--SIEDFLA 158
             +++TCKVC +RS K   + +Y +GVV+  C GC   H+IAD+LGWF +  G  +IE+ LA
Sbjct:    64 LVYTCKVCGSRSSKRISKLAYHRGVVIVTCPGCQKHHVIADNLGWFSDLDGKRNIEEILA 123

Query:   159 ARGEEVKKGSVD-TLNLTL 176
             ARGE+V + + D  L L L
Sbjct:   124 ARGEKVCRVAGDGALELVL 142

GO:0005739 "mitochondrion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NF52 DNLZ "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 31/68 (45%), Positives = 50/68 (73%)

Query:   102 MIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGE-PG--SIEDFLA 158
             +++TCKVC  R+ +   R +Y +GVV+  C GC++ H+IAD+LGWF +  G  +IE+ LA
Sbjct:    69 LVYTCKVCRRRTAQNISRLAYSRGVVIVTCPGCHSHHVIADNLGWFSDLQGKRNIEEILA 128

Query:   159 ARGEEVKK 166
             A+GE+V++
Sbjct:   129 AKGEKVRR 136

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018163001 SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (192 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	187
pfam05180	66	pfam05180, zf-DNL, DNL zinc finger	2e-31

>gnl|CDD|191217 pfam05180, zf-DNL, DNL zinc finger

 Score =  108 bits (271), Expect = 2e-31
 Identities = 38/66 (57%), Positives = 48/66 (72%), Gaps = 1/66 (1%)

Query: 100 LAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGE-PGSIEDFLA 158
             + FTCKVC TRS KT  +++YEKG V+ +C GC N HLIAD+LGWFG+   +IED LA
Sbjct: 1   YQLTFTCKVCGTRSTKTISKQAYEKGTVIVQCPGCKNRHLIADNLGWFGDGKVNIEDILA 60

Query: 159 ARGEEV 164
            +GE V
Sbjct: 61  EKGESV 66

The domain is named after a short C-terminal motif of D(N/H)L. This domain is a novel zinc-finger protein essential for protein import into mitochondria. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
PF05180	66	zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc	100.0
KOG3277	165	consensus Uncharacterized conserved protein [Funct	100.0
PF05207	55	zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc	93.47
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	90.07
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	89.24
PF01096	39	TFIIS_C: Transcription factor S-II (TFIIS); InterP	88.41
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	88.28
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	87.89
KOG2923	67	consensus Uncharacterized conserved protein [Funct	87.84
smart00440	40	ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo	87.82
TIGR01206	54	lysW lysine biosynthesis protein LysW. This very s	87.6
COG5216	67	Uncharacterized conserved protein [Function unknow	86.32
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	81.6

>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=100.00  E-value=1.4e-38  Score=228.77  Aligned_cols=65  Identities=54%  Similarity=1.056  Sum_probs=51.2

Q ss_pred             eEEEEecCCCCCccccccChhhccCceEEEEcCCCCcceeeeccccCcCC-CCCHHHHHHHcCCce
Q 029824          100 LAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGE-PGSIEDFLAARGEEV  164 (187)
Q Consensus       100 l~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLIADnLgwF~e-~~nIEdil~~kGe~V  164 (187)
                      |+|+|||++|++||+|+|||+||++||||||||||+|+||||||||||+| +.||||||++|||+|
T Consensus         1 ~~l~FTC~~C~~Rs~~~~sk~aY~~GvViv~C~gC~~~HlIaDnLg~f~e~~~~iE~~l~~kge~v   66 (66)
T PF05180_consen    1 YQLTFTCNKCGTRSAKMFSKQAYHKGVVIVQCPGCKNRHLIADNLGWFGENKRNIEDILKEKGEKV   66 (66)
T ss_dssp             EEEEEEETTTTEEEEEEEEHHHHHTSEEEEE-TTS--EEES--SS-SGGGS---HHHHHHHH----
T ss_pred             CeEEEEcCCCCCccceeeCHHHHhCCeEEEECCCCcceeeehhhhcccccCCCCHHHHHHHcCCcC
Confidence            68999999999999999999999999999999999999999999999998 789999999999987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.

>KOG3277 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.6e-36  Score=245.92  Aligned_cols=76  Identities=53%  Similarity=0.995  Sum_probs=71.6

Q ss_pred             CCCCceEEEEecCCCCCccccccChhhccCceEEEEcCCCCcceeeeccccCcCC---CCCHHHHHHHcCCceeeeccc
Q 029824           95 SARHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGE---PGSIEDFLAARGEEVKKGSVD  170 (187)
Q Consensus        95 ~pR~~l~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLIADnLgwF~e---~~nIEdil~~kGe~V~kg~~~  170 (187)
                      .|+++|+|.|||++|+||+.|+|||+||++|||||||+||+|+||||||||||.|   ++||||||++|||.|+++..+
T Consensus        71 ~~kp~m~l~yTCkvCntRs~ktisk~AY~~GvVivqC~gC~~~HliaDnL~~F~d~~~~~nied~l~~kge~v~~~~g~  149 (165)
T KOG3277|consen   71 VPKPRMQLAYTCKVCNTRSTKTISKQAYEKGVVIVQCPGCKNHHLIADNLGWFHDLKGKRNIEDILAAKGEQVKRNLGD  149 (165)
T ss_pred             CCCcceEEEEEeeccCCccccccChhhhhCceEEEECCCCccceeehhhhcccccccccccHHHHHHhccceeeeeccc
Confidence            5788899999999999999999999999999999999999999999999999987   457999999999999997644

>PF05207 zf-CSL: CSL zinc finger; InterPro: IPR007872 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.47  E-value=0.068  Score=36.98  Aligned_cols=34  Identities=24%  Similarity=0.603  Sum_probs=29.0

Q ss_pred             EEEEecCCCCCccccccChhhccCceEEEEcCCCCcc
Q 029824          101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNL  137 (187)
Q Consensus       101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~  137 (187)
                      ...|.| -||..  -.|++.-.+.|.++|+|++|.-+
T Consensus        16 ~~~y~C-RCG~~--f~i~e~~l~~~~~iv~C~sCSL~   49 (55)
T PF05207_consen   16 VYSYPC-RCGGE--FEISEEDLEEGEVIVQCDSCSLW   49 (55)
T ss_dssp             EEEEEE-TTSSE--EEEEHHHHHCT--EEEETTTTEE
T ss_pred             EEEEcC-CCCCE--EEEcchhccCcCEEEECCCCccE
Confidence            578999 99998  78999999999999999999865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a probable zinc binding motif that contains four cysteines and may chelate zinc, known as the DPH-type after the diphthamide (DPH) biosynthesis protein in which it was first characterised, including the proteins DPH3 and DPH4. This domain is also found associated with N-terminal domain of heat shock protein DnaJ IPR001623 from INTERPRO domain. Diphthamide is a unique post-translationally modified histidine residue found only in translation elongation factor 2 (eEF-2). It is conserved from archaea to humans and serves as the target for diphteria toxin and Pseudomonas exotoxin A. These two toxins catalyse the transfer of ADP-ribose to diphtamide on eEF-2, thus inactivating eEF-2, halting cellular protein synthesis, and causing cell death []. The biosynthesis of diphtamide is dependent on at least five proteins, DPH1 to -5, and a still unidentified amidating enzyme. DPH3 and DPH4 share a conserved region, which encode a putative zinc finger, the DPH-type or CSL-type (after the conserved motif of the final cysteine) zinc finger [, ]. The function of this motif is unknown. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2L6L_A 1WGE_A 2JR7_A 1YOP_A 1YWS_A.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=90.07  E-value=0.25  Score=32.34  Aligned_cols=36  Identities=17%  Similarity=0.337  Sum_probs=25.8

Q ss_pred             EEEEecCCCCCccccccChhhccCceEEEEcCCCCcceeeecc
Q 029824          101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADH  143 (187)
Q Consensus       101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLIADn  143 (187)
                      ++.|.|..||....       +...+..++||.|.+.=++.|+
T Consensus         1 ~~~y~C~~CG~~~~-------~~~~~~~~~Cp~CG~~~~~~~~   36 (46)
T PRK00398          1 MAEYKCARCGREVE-------LDEYGTGVRCPYCGYRILFKER   36 (46)
T ss_pred             CCEEECCCCCCEEE-------ECCCCCceECCCCCCeEEEccC
Confidence            36899999998732       2333337899999988666654

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=89.24  E-value=0.41  Score=30.50  Aligned_cols=34  Identities=32%  Similarity=0.634  Sum_probs=23.3

Q ss_pred             EEEecCCCCCccccccChhhccCceEEEEcCCCCcc
Q 029824          102 MIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNL  137 (187)
Q Consensus       102 l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~  137 (187)
                      |..+|..|+++-  .|.....-.+-..|+|+.|+..
T Consensus         1 M~i~CP~C~~~f--~v~~~~l~~~~~~vrC~~C~~~   34 (37)
T PF13719_consen    1 MIITCPNCQTRF--RVPDDKLPAGGRKVRCPKCGHV   34 (37)
T ss_pred             CEEECCCCCceE--EcCHHHcccCCcEEECCCCCcE
Confidence            467888898773  4444444455568899999764

>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=88.41  E-value=0.38  Score=31.08  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=24.0

Q ss_pred             EecCCCCCcccccc---ChhhccCceEEEEcCCCCcc
Q 029824          104 FTCKVCETRSVKTA---CRESYEKGVVVARCGGCNNL  137 (187)
Q Consensus       104 FTC~~C~tRs~k~i---Sk~AY~~GvViVqC~gC~n~  137 (187)
                      ++|..|+.+.+..+   .|.|-+.-+++..|-.|..+
T Consensus         1 ~~Cp~Cg~~~a~~~~~Q~rsaDE~~T~fy~C~~C~~~   37 (39)
T PF01096_consen    1 IKCPKCGHNEAVFFQIQTRSADEPMTLFYVCCNCGHR   37 (39)
T ss_dssp             S--SSS-SSEEEEEEESSSSSSSSSEEEEEESSSTEE
T ss_pred             CCCcCCCCCeEEEEEeeccCCCCCCeEEEEeCCCCCe
Confidence            46888988887777   55677777889999888754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIs (TFIIS). In eukaryotes the initiation of transcription of protein encoding genes by polymerase II (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least eight different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, -IIH and -IIS []. During mRNA elongation, Pol II can encounter DNA sequences that cause reverse movement of the enzyme. Such backtracking involves extrusion of the RNA 3'-end into the pore, and can lead to transcriptional arrest. Escape from arrest requires cleavage of the extruded RNA with the help of TFIIS, which induces mRNA cleavage by enhancing the intrinsic nuclease activity of RNA polymerase (Pol) II, past template-encoded pause sites []. TFIIS extends from the polymerase surface via a pore to the internal active site. Two essential and invariant acidic residues in a TFIIS loop complement the Pol II active site and could position a metal ion and a water molecule for hydrolytic RNA cleavage. TFIIS also induces extensive structural changes in Pol II that would realign nucleic acids in the active centre. TFIIS is a protein of about 300 amino acids. It contains three regions: a variable N-terminal domain not required for TFIIS activity; a conserved central domain required for Pol II binding; and a conserved C-terminal C4-type zinc finger essential for RNA cleavage. The zinc finger folds in a conformation termed a zinc ribbon [] characterised by a three-stranded antiparallel beta-sheet and two beta-hairpins. A backbone model for Pol II-TFIIS complex was obtained from X-ray analysis. It shows that a beta hairpin protrudes from the zinc finger and complements the pol II active site []. Some viral proteins also contain the TFIIS zinc ribbon C-terminal domain. The Vaccinia virus protein, unlike its eukaryotic homologue, is an integral RNA polymerase subunit rather than a readily separable transcription factor []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding, 0006351 transcription, DNA-dependent; PDB: 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I 3I4M_I ....

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=88.28  E-value=0.55  Score=29.93  Aligned_cols=34  Identities=26%  Similarity=0.540  Sum_probs=21.9

Q ss_pred             EEEecCCCCCccccccChhhccCceEEEEcCCCCcc
Q 029824          102 MIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNL  137 (187)
Q Consensus       102 l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~  137 (187)
                      |..+|..|+++-  .|.-...-.+-+-|||+.|...
T Consensus         1 M~i~Cp~C~~~y--~i~d~~ip~~g~~v~C~~C~~~   34 (36)
T PF13717_consen    1 MIITCPNCQAKY--EIDDEKIPPKGRKVRCSKCGHV   34 (36)
T ss_pred             CEEECCCCCCEE--eCCHHHCCCCCcEEECCCCCCE
Confidence            467888888764  3444334455568888888753

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=87.89  E-value=0.55  Score=29.24  Aligned_cols=33  Identities=27%  Similarity=0.636  Sum_probs=22.6

Q ss_pred             EEEecCCCCCccccccChhhc-cCceEEEEcCCCCcc
Q 029824          102 MIFTCKVCETRSVKTACRESY-EKGVVVARCGGCNNL  137 (187)
Q Consensus       102 l~FTC~~C~tRs~k~iSk~AY-~~GvViVqC~gC~n~  137 (187)
                      |.++|..|++..  .|..... ..|. .|+||.|...
T Consensus         1 M~~~CP~C~~~~--~v~~~~~~~~~~-~v~C~~C~~~   34 (38)
T TIGR02098         1 MRIQCPNCKTSF--RVVDSQLGANGG-KVRCGKCGHV   34 (38)
T ss_pred             CEEECCCCCCEE--EeCHHHcCCCCC-EEECCCCCCE
Confidence            568999999874  3443333 3443 8999999864

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>KOG2923 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.84  E-value=0.43  Score=35.19  Aligned_cols=31  Identities=35%  Similarity=0.681  Sum_probs=26.9

Q ss_pred             EEecCCCCCccccccChhhccCceEEEEcCCCCc
Q 029824          103 IFTCKVCETRSVKTACRESYEKGVVVARCGGCNN  136 (187)
Q Consensus       103 ~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n  136 (187)
                      .|-| .||-|  -.|++.-.+.|-.+++||+|.-
T Consensus        22 ~yPC-pCGDr--f~It~edL~~ge~Va~CpsCSL   52 (67)
T KOG2923|consen   22 YYPC-PCGDR--FQITLEDLENGEDVARCPSCSL   52 (67)
T ss_pred             EcCC-CCCCe--eeecHHHHhCCCeeecCCCceE
Confidence            4444 79999  7899999999999999999974

>smart00440 ZnF_C2C2 C2C2 Zinc finger

Probab=87.82  E-value=0.54  Score=30.56  Aligned_cols=34  Identities=24%  Similarity=0.398  Sum_probs=26.1

Q ss_pred             EecCCCCCcccccc---ChhhccCceEEEEcCCCCcc
Q 029824          104 FTCKVCETRSVKTA---CRESYEKGVVVARCGGCNNL  137 (187)
Q Consensus       104 FTC~~C~tRs~k~i---Sk~AY~~GvViVqC~gC~n~  137 (187)
                      |.|..|+.+.+..+   .|.|-+-=+++..|..|..+
T Consensus         1 ~~Cp~C~~~~a~~~q~Q~RsaDE~mT~fy~C~~C~~~   37 (40)
T smart00440        1 APCPKCGNREATFFQLQTRSADEPMTVFYVCTKCGHR   37 (40)
T ss_pred             CcCCCCCCCeEEEEEEcccCCCCCCeEEEEeCCCCCE
Confidence            47889998877666   45666777899999999754

Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.

>TIGR01206 lysW lysine biosynthesis protein LysW

Probab=87.60  E-value=0.47  Score=33.22  Aligned_cols=35  Identities=20%  Similarity=0.392  Sum_probs=24.4

Q ss_pred             EEEecCCCCCccccccChhhccCceEEEEcCCCCcceeee
Q 029824          102 MIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIA  141 (187)
Q Consensus       102 l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLIA  141 (187)
                      |+|+|..|+..-  .+. ..+. |- ||.||.|...+=|.
T Consensus         1 ~~~~CP~CG~~i--ev~-~~~~-Ge-iV~Cp~CGaeleVv   35 (54)
T TIGR01206         1 MQFECPDCGAEI--ELE-NPEL-GE-LVICDECGAELEVV   35 (54)
T ss_pred             CccCCCCCCCEE--ecC-CCcc-CC-EEeCCCCCCEEEEE
Confidence            479999999853  232 2233 66 66999999887654

This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.

>COG5216 Uncharacterized conserved protein [Function unknown]

Probab=86.32  E-value=0.78  Score=33.67  Aligned_cols=37  Identities=32%  Similarity=0.679  Sum_probs=30.0

Q ss_pred             CCceEEEEecCCCCCccccccChhhccCceEEEEcCCCCc
Q 029824           97 RHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNN  136 (187)
Q Consensus        97 R~~l~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n  136 (187)
                      |...+.+|.| .||-|-  .||-.-...|-|+.+||+|.-
T Consensus        16 ~e~~~ftyPC-PCGDRF--eIsLeDl~~GE~VArCPSCSL   52 (67)
T COG5216          16 REEKTFTYPC-PCGDRF--EISLEDLRNGEVVARCPSCSL   52 (67)
T ss_pred             CCCceEEecC-CCCCEe--EEEHHHhhCCceEEEcCCceE
Confidence            3445678888 699884  688889999999999999973

>TIGR00416 sms DNA repair protein RadA

Probab=81.60  E-value=1.1  Score=42.03  Aligned_cols=29  Identities=28%  Similarity=0.620  Sum_probs=23.3

Q ss_pred             EEEecCCCCCccccccChhhccCceEEEEcCCCCcceeee
Q 029824          102 MIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIA  141 (187)
Q Consensus       102 l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLIA  141 (187)
                      ..|.|..||..+.+-           .-|||+|..|--+.
T Consensus         6 ~~y~C~~Cg~~~~~~-----------~g~Cp~C~~w~t~~   34 (454)
T TIGR00416         6 SKFVCQHCGADSPKW-----------QGKCPACHAWNTIT   34 (454)
T ss_pred             CeEECCcCCCCCccc-----------cEECcCCCCccccc
Confidence            369999999887664           47999999995554

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	187
2e2z_A	100	Solution Nmr Structure Of Yeast Tim15, Co-Chaperone		3e-11

>pdb|2E2Z|A Chain A, Solution Nmr Structure Of Yeast Tim15, Co-Chaperone Of Mitochondrial Hsp70 Length = 100

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 100 LAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPG-SIEDFLA 158
           + + FTCK C TRS  T  +++YEKG V+  C  C   HLIADHL  F +   ++E  + 
Sbjct: 10  MMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLMK 69
Query: 159 ARGEEVKKGSVDTLNLTLEDLAGREVLKD 187
           A GE+V   S D  +L  ED+   + LKD
Sbjct: 70  ANGEQV---SQDVGDLEFEDIP--DSLKD 93

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
2e2z_A	100	TIM15; protein import, zinc finger, protein transp	4e-34
3k1f_M	197	Transcription initiation factor IIB; RNA polymeras	5e-04

>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae} Length = 100

 Score =  115 bits (289), Expect = 4e-34
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 93  KTSARHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPG- 151
               +  + + FTCK C TRS  T  +++YEKG V+  C  C   HLIADHL  F +   
Sbjct: 3   HMVDKPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHV 62

Query: 152 SIEDFLAARGEEVKKGSVD-TLNLTLEDLA 180
           ++E  + A GE+V +   D       + L 
Sbjct: 63  TVEQLMKANGEQVSQDVGDLEFEDIPDSLK 92

>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197

 Score = 38.1 bits (88), Expect = 5e-04
 Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 94  TSARHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGC 134
                +L ++ TC  C  +       E + +G VV  C  C
Sbjct: 12  GRRGPNLNIVLTCPEC--KVYPPKIVERFSEGDVV--CALC 48

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
2e2z_A	100	TIM15; protein import, zinc finger, protein transp	100.0
1wge_A	83	Hypothetical protein 2610018L09RIK; diphthamide,CS	93.6
2jr7_A	89	DPH3 homolog; DESR1, CSL zinc finger, metal bindin	93.51
1yop_A	83	KTI11P; zinc finger, metal binding protein; NMR {S	93.04
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	90.28

>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-41  Score=257.45  Aligned_cols=85  Identities=38%  Similarity=0.694  Sum_probs=78.2

Q ss_pred             CCCCceEEEEecCCCCCccccccChhhccCceEEEEcCCCCcceeeeccccCcCC-CCCHHHHHHHcCCceeeecccccC
Q 029824           95 SARHDLAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGE-PGSIEDFLAARGEEVKKGSVDTLN  173 (187)
Q Consensus        95 ~pR~~l~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLIADnLgwF~e-~~nIEdil~~kGe~V~kg~~~~~~  173 (187)
                      .|+++|+|+|||++|++||+|+|||+||++||||||||||+|+||||||||||++ +.||||||++|||.|+++.   .+
T Consensus         5 ~~~~~~~l~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~HlIaDnLgwF~d~~~~IEdil~~kGe~V~~~~---~d   81 (100)
T 2e2z_A            5 VDKPKMMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKIFHDHHVTVEQLMKANGEQVSQDV---GD   81 (100)
T ss_dssp             SCCCEEEEEEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEEESCCSSCSGGGSCCCHHHHHHHHCCCCSSSS---CE
T ss_pred             CCCCcEEEEEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccceEeehhhhhhccCCCCHHHHHHHcCCEeeecC---CC
Confidence            4688999999999999999999999999999999999999999999999999988 6899999999999999853   35


Q ss_pred             cccccccCc
Q 029824          174 LTLEDLAGR  182 (187)
Q Consensus       174 lt~eDl~g~  182 (187)
                      +++|||++.
T Consensus        82 ~~~ed~pe~   90 (100)
T 2e2z_A           82 LEFEDIPDS   90 (100)
T ss_dssp             EEESSCCHH
T ss_pred             ccHhhChHH
Confidence            788888764

>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1

Probab=93.60  E-value=0.036  Score=40.70  Aligned_cols=35  Identities=26%  Similarity=0.604  Sum_probs=31.1

Q ss_pred             EEEEecCCCCCccccccChhhccCceEEEEcCCCCcce
Q 029824          101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLH  138 (187)
Q Consensus       101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~H  138 (187)
                      ...|.|. ||-+  -.|++.-.+.|.++|+|++|.-+=
T Consensus        28 ~y~y~Cr-CGd~--F~it~edL~~ge~iv~C~sCSL~I   62 (83)
T 1wge_A           28 TYFYPCP-CGDN--FAITKEDLENGEDVATCPSCSLII   62 (83)
T ss_dssp             EEEECCS-SSSC--EEEEHHHHHTTCCEEECTTTCCEE
T ss_pred             EEEEeCC-CCCE--EEECHHHHhCCCEEEECCCCceEE
Confidence            5789997 9988  689999999999999999998753

>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}

Probab=93.51  E-value=0.029  Score=41.80  Aligned_cols=37  Identities=24%  Similarity=0.589  Sum_probs=31.7

Q ss_pred             EEEEecCCCCCccccccChhhccCceEEEEcCCCCcceee
Q 029824          101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLI  140 (187)
Q Consensus       101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLI  140 (187)
                      ...|.|. ||.+  -.|++...+.|.++|+|++|.-+=.|
T Consensus        21 ~y~ypCr-CGd~--F~IteedLe~ge~iv~C~sCSL~IkV   57 (89)
T 2jr7_A           21 TYFYPCP-CGDN--FSITKEDLENGEDVATCPSCSLIIKV   57 (89)
T ss_dssp             EEEEECT-TSSE--EEEEHHHHHHTCCEEECTTTCCEEEE
T ss_pred             EEEEcCC-CCCE--EEECHHHHhCCCEEEECCCCccEEEE
Confidence            5789997 9988  68999999999999999999976433

>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A

Probab=93.04  E-value=0.046  Score=40.13  Aligned_cols=35  Identities=20%  Similarity=0.441  Sum_probs=30.2

Q ss_pred             EEEEecCCCCCccccccChhhccCceEEEEcCCCCcce
Q 029824          101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLH  138 (187)
Q Consensus       101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~H  138 (187)
                      ...|.|. ||  ..-.|++.-.+.|-++|+|++|.-+=
T Consensus        21 ~y~ypCr-CG--d~F~it~edL~~ge~iv~C~sCSL~I   55 (83)
T 1yop_A           21 MFTYPCP-CG--DRFQIYLDDMFEGEKVAVCPSCSLMI   55 (83)
T ss_dssp             EEEEEET-TT--EEEEEEHHHHHTTCCEEECSSSCCEE
T ss_pred             EEEEeCC-CC--CeEEECHHHHhCCCEEEECCCCccEE
Confidence            5789997 99  55689999999999999999999763

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=90.28  E-value=0.14  Score=39.29  Aligned_cols=36  Identities=14%  Similarity=0.527  Sum_probs=28.5

Q ss_pred             EEEEecCCCCCccccccChhhccCceEEEEcCCCCcceee
Q 029824          101 AMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLI  140 (187)
Q Consensus       101 ~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLI  140 (187)
                      ...|.|. ||.+  -.|++.-.+.| ++|+|++|..+-.|
T Consensus       110 ~f~~~Cr-CG~~--f~i~~~~l~~~-~~v~C~sCSl~~~v  145 (155)
T 2l6l_A          110 SFYLSCR-CGGK--YSVSKDEAEEV-SLISCDTCSLIIEL  145 (155)
T ss_dssp             EEEEECS-SSCE--EEEETTHHHHC-CEEECSSSSCEEEE
T ss_pred             EEEEcCC-CCCe--EEecHHHhCCC-CEEECCCCceEEEE
Confidence            5678896 9976  56777777777 88999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d1ywsa1	82	Diphthamide biosynthesis protein 3, DPH3 {Baker's	93.64
d1wgea1	70	DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus	91.26
d1qypa_	57	RBP9 subunit of RNA polymerase II {Archaeon Thermo	89.06
d1wjva1	35	Cell growth regulating nucleolar protein LyaR {Mou	81.39
d1tfia_	50	Transcriptional factor SII, C-terminal domain {Hum	80.03

>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: Diphthamide biosynthesis protein 3, DPH3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.64  E-value=0.012  Score=41.75  Aligned_cols=58  Identities=17%  Similarity=0.414  Sum_probs=44.7

Q ss_pred             eEEEEecCCCCCccccccChhhccCceEEEEcCCCCcceeeeccccCcCCCCCHHHHHHHcCCceee
Q 029824          100 LAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHLIADHLGWFGEPGSIEDFLAARGEEVKK  166 (187)
Q Consensus       100 l~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HLIADnLgwF~e~~nIEdil~~kGe~V~k  166 (187)
                      ....|.|. ||-+  -.|++.-.+.|-++++|++|.-+=.|-     | +...+++...++|+.+..
T Consensus        19 ~~~~ypCr-CGd~--F~it~~dLe~ge~v~~C~sCSL~IrVi-----f-~~ed~~~~~~~~~~~~~~   76 (82)
T d1ywsa1          19 QMFTYPCP-CGDR--FQIYLDDMFEGEKVAVCPSCSLMIDVV-----F-DKEDLAEYYEEAGIHPPE   76 (82)
T ss_dssp             TEEEECCS-SSSC--EEEEHHHHHTTCCEEEETTTTEEEEEE-----C-CHHHHHHHHHHHTCCCCC
T ss_pred             CEEEeccc-cCCe--EEEcHHHHhCCCeEEeCCCCceEEEEE-----e-chhHhhhhhhhhcCCCCc
Confidence            35678888 9976  789999999999999999999763331     2 355678888888877653

>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Rubredoxin-like
superfamily: CSL zinc finger
family: CSL zinc finger
domain: DelGEF-interacting protein 1, DelGIP1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.26  E-value=0.05  Score=37.35  Aligned_cols=37  Identities=24%  Similarity=0.505  Sum_probs=31.5

Q ss_pred             eEEEEecCCCCCccccccChhhccCceEEEEcCCCCccee
Q 029824          100 LAMIFTCKVCETRSVKTACRESYEKGVVVARCGGCNNLHL  139 (187)
Q Consensus       100 l~l~FTC~~C~tRs~k~iSk~AY~~GvViVqC~gC~n~HL  139 (187)
                      ....|.|. ||-  .-.|++.-.+.|-++++||+|.-+=.
T Consensus        20 ~~~~ypCp-CGd--~F~it~~dLe~ge~V~~C~sCSL~ik   56 (70)
T d1wgea1          20 ETYFYPCP-CGD--NFAITKEDLENGEDVATCPSCSLIIK   56 (70)
T ss_dssp             TEEEECCS-SSS--CEEEEHHHHHTTCCEEECTTTCCEEE
T ss_pred             CEEEeCCC-CCC--eEEECHHHHhCCCeEEeCCCCceEEE
Confidence            45788998 996  47889999999999999999997633

>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: RBP9 subunit of RNA polymerase II
species: Archaeon Thermococcus celer [TaxId: 2264]

Probab=89.06  E-value=0.2  Score=32.62  Aligned_cols=36  Identities=19%  Similarity=0.379  Sum_probs=29.7

Q ss_pred             EEEecCCCCCccccccC---hhhccCceEEEEcCCCCcc
Q 029824          102 MIFTCKVCETRSVKTAC---RESYEKGVVVARCGGCNNL  137 (187)
Q Consensus       102 l~FTC~~C~tRs~k~iS---k~AY~~GvViVqC~gC~n~  137 (187)
                      ..++|.+|+.+.+..+.   |.|-+--+++..|..|..+
T Consensus        14 ~~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~~   52 (57)
T d1qypa_          14 TKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHT   52 (57)
T ss_dssp             EECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred             ccCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCCc
Confidence            35689999999877665   4569999999999999864

>d1wjva1 g.37.1.2 (A:1-35) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Cell growth regulating nucleolar protein LyaR
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.39  E-value=0.27  Score=29.75  Aligned_cols=15  Identities=27%  Similarity=0.651  Sum_probs=12.6

Q ss_pred             ceEEEEecCCCCCcc
Q 029824           99 DLAMIFTCKVCETRS  113 (187)
Q Consensus        99 ~l~l~FTC~~C~tRs  113 (187)
                      ..++-|||+.||+.-
T Consensus         6 s~MVfFtCn~CGEs~   20 (35)
T d1wjva1           6 SGMVFFTCNACGESV   20 (35)
T ss_dssp             CCCCEEEESSSCCEE
T ss_pred             ceEEEEEcchhHHHH
Confidence            468899999999864

>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcriptional factor SII, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.03  E-value=0.52  Score=30.03  Aligned_cols=35  Identities=26%  Similarity=0.583  Sum_probs=28.9

Q ss_pred             EEecCCCCCcccccc---ChhhccCceEEEEcCCCCcc
Q 029824          103 IFTCKVCETRSVKTA---CRESYEKGVVVARCGGCNNL  137 (187)
Q Consensus       103 ~FTC~~C~tRs~k~i---Sk~AY~~GvViVqC~gC~n~  137 (187)
                      .|+|..|+.+...-.   .|.|=|--+|+++|..|.++
T Consensus         9 ~~~C~kC~~~~~~~~~~QtRSADEp~T~F~~C~~Cg~~   46 (50)
T d1tfia_           9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNR   46 (50)
T ss_dssp             CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCE
T ss_pred             CEECCCCCCCccEEEEEEccCCCCCceEEEEccccCCe
Confidence            589999999886544   46677888999999999876